Query 018132
Match_columns 360
No_of_seqs 276 out of 1494
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 10:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018132.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018132hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 66.1 1.5 0.00011 30.3 2.2 25 47-71 17-41 (56)
2 d2pg3a1 c.26.2.1 (A:1-230) Que 62.6 0.79 5.7E-05 38.4 0.2 25 49-75 182-206 (230)
3 d2dkta2 g.93.1.1 (A:82-137) RI 55.6 1.7 0.00013 30.1 0.9 22 51-72 4-26 (56)
4 d2dmda2 g.37.1.1 (A:8-33) Zinc 47.9 2 0.00015 24.8 0.2 14 64-77 2-15 (26)
5 d1vfya_ g.50.1.1 (A:) vps27p p 43.3 4.3 0.00031 28.3 1.5 24 51-74 7-32 (67)
6 d2c6aa1 g.41.11.1 (A:290-335) 41.3 5.5 0.0004 26.3 1.6 19 51-69 15-33 (46)
7 d1joca1 g.50.1.1 (A:1348-1411) 40.9 5.8 0.00042 27.4 1.8 25 50-74 9-35 (64)
8 d1wfka_ g.50.1.1 (A:) Zinc fin 39.1 5.2 0.00038 29.5 1.4 26 49-74 9-36 (88)
9 d1dvpa2 g.50.1.1 (A:149-220) H 39.0 5.9 0.00043 28.1 1.6 24 51-74 15-40 (72)
10 d2adra2 g.37.1.1 (A:131-161) A 34.1 3.4 0.00025 25.0 -0.3 14 64-77 2-15 (31)
11 d2cr8a1 g.41.11.1 (A:8-48) MDM 32.1 9.4 0.00068 24.5 1.6 19 51-69 6-24 (41)
12 d1njqa_ g.37.1.3 (A:) SUPERMAN 31.3 6.9 0.0005 24.7 0.8 13 60-72 2-14 (37)
13 d2dkta2 g.93.1.1 (A:82-137) RI 30.7 3.2 0.00023 28.7 -1.0 31 50-80 18-54 (56)
14 d1tota1 g.44.1.6 (A:1-52) CREB 20.6 11 0.00083 25.1 0.3 22 49-71 6-27 (52)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=66.14 E-value=1.5 Score=30.31 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=22.0
Q ss_pred eceeecCCCCcccCCCCcCCCCCCc
Q 018132 47 VKVKYCDTCMLYRPPRASHCSICNN 71 (360)
Q Consensus 47 v~~KyC~tC~i~RPpRs~HCsvC~r 71 (360)
...+.|..|...-|+|+..|+.|+.
T Consensus 17 ~~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 17 FLKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhhHHHhhccccCCccccccccCCC
Confidence 4567899999999999999998875
No 2
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=62.65 E-value=0.79 Score=38.40 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=20.6
Q ss_pred eeecCCCCcccCCCCcCCCCCCccccc
Q 018132 49 VKYCDTCMLYRPPRASHCSICNNCVQR 75 (360)
Q Consensus 49 ~KyC~tC~i~RPpRs~HCsvC~rCV~r 75 (360)
...-.+| |+|.|.+||..|..|++|
T Consensus 182 ~~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 182 RYHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hhccCCC--CCCCCCCCCCCCHhHHHH
Confidence 3555677 788889999999999987
No 3
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=55.56 E-value=1.7 Score=30.08 Aligned_cols=22 Identities=36% Similarity=1.120 Sum_probs=10.5
Q ss_pred ecCCCCcccCCC-CcCCCCCCcc
Q 018132 51 YCDTCMLYRPPR-ASHCSICNNC 72 (360)
Q Consensus 51 yC~tC~i~RPpR-s~HCsvC~rC 72 (360)
||..|++|--.+ .+||.-|+-|
T Consensus 4 fC~iC~l~dddk~~yHC~~CgiC 26 (56)
T d2dkta2 4 YCSICHLFDKDKRQYHCESCGIC 26 (56)
T ss_dssp ECSSSCCEECSSSEEEETTTTEE
T ss_pred ECCcCCcccCCCCcccCCCCCce
Confidence 555555553222 2555555555
No 4
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.88 E-value=2 Score=24.85 Aligned_cols=14 Identities=36% Similarity=1.089 Sum_probs=12.0
Q ss_pred cCCCCCCcccccCC
Q 018132 64 SHCSICNNCVQRFD 77 (360)
Q Consensus 64 ~HCsvC~rCV~rfD 77 (360)
|.|.+|++|..|-|
T Consensus 2 hkc~~c~kcfsrkd 15 (26)
T d2dmda2 2 HKCEVCGKCFSRKD 15 (26)
T ss_dssp CCBTTTTBCCCCHH
T ss_pred CccchhhhHhcchh
Confidence 67999999988766
No 5
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.30 E-value=4.3 Score=28.34 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=17.0
Q ss_pred ecCCCCc--ccCCCCcCCCCCCcccc
Q 018132 51 YCDTCML--YRPPRASHCSICNNCVQ 74 (360)
Q Consensus 51 yC~tC~i--~RPpRs~HCsvC~rCV~ 74 (360)
-|..|.. -.-.|-|||+.||+-+=
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 3777765 23458899999998553
No 6
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.32 E-value=5.5 Score=26.30 Aligned_cols=19 Identities=42% Similarity=1.060 Sum_probs=16.7
Q ss_pred ecCCCCcccCCCCcCCCCC
Q 018132 51 YCDTCMLYRPPRASHCSIC 69 (360)
Q Consensus 51 yC~tC~i~RPpRs~HCsvC 69 (360)
-|..|+..-||-..||..|
T Consensus 15 kC~~C~~~N~Pl~ryC~rC 33 (46)
T d2c6aa1 15 KCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp ECTTTCCEECSSCSSCTTT
T ss_pred cCccccccCCcchhHhHHH
Confidence 5999999999999898876
No 7
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.91 E-value=5.8 Score=27.35 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=16.8
Q ss_pred eecCCCCcc--cCCCCcCCCCCCcccc
Q 018132 50 KYCDTCMLY--RPPRASHCSICNNCVQ 74 (360)
Q Consensus 50 KyC~tC~i~--RPpRs~HCsvC~rCV~ 74 (360)
.-|..|... ---|-|||+.|++-+=
T Consensus 9 ~~C~~C~~~F~~~~rrHHCR~CG~v~C 35 (64)
T d1joca1 9 QNCMACGKGFSVTVRRHHCRQCGNIFC 35 (64)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CcCcCcCCcccCCccccchhhhCCeec
Confidence 357777542 2347899999998653
No 8
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.08 E-value=5.2 Score=29.50 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=18.5
Q ss_pred eeecCCCCcc--cCCCCcCCCCCCcccc
Q 018132 49 VKYCDTCMLY--RPPRASHCSICNNCVQ 74 (360)
Q Consensus 49 ~KyC~tC~i~--RPpRs~HCsvC~rCV~ 74 (360)
...|..|... ---|-|||+.|++.+=
T Consensus 9 ~s~C~~C~~~Fs~~~rrhhCr~CG~vfC 36 (88)
T d1wfka_ 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFC 36 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEE
T ss_pred cCcCcccCchhccccccccccccChhhC
Confidence 3468888763 2457899999998553
No 9
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=39.03 E-value=5.9 Score=28.05 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=17.6
Q ss_pred ecCCCCcc--cCCCCcCCCCCCcccc
Q 018132 51 YCDTCMLY--RPPRASHCSICNNCVQ 74 (360)
Q Consensus 51 yC~tC~i~--RPpRs~HCsvC~rCV~ 74 (360)
.|..|... --.|-|||+.|++.+-
T Consensus 15 ~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 15 VCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred ccccCCCcccCccccccccccCCeeC
Confidence 58888753 3358899999998654
No 10
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=34.09 E-value=3.4 Score=25.04 Aligned_cols=14 Identities=36% Similarity=0.812 Sum_probs=12.1
Q ss_pred cCCCCCCcccccCC
Q 018132 64 SHCSICNNCVQRFD 77 (360)
Q Consensus 64 ~HCsvC~rCV~rfD 77 (360)
..|.+|+||..|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 47999999998877
No 11
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.12 E-value=9.4 Score=24.52 Aligned_cols=19 Identities=26% Similarity=0.805 Sum_probs=15.6
Q ss_pred ecCCCCcccCCCCcCCCCC
Q 018132 51 YCDTCMLYRPPRASHCSIC 69 (360)
Q Consensus 51 yC~tC~i~RPpRs~HCsvC 69 (360)
-|..|+..-||-..||..|
T Consensus 6 kC~~C~~~N~Pl~ryC~rC 24 (41)
T d2cr8a1 6 QCTECKKFNSPSKRYCFRC 24 (41)
T ss_dssp ECSSSCCEECSSCCBCTTT
T ss_pred ecCcccccCCcchhHHHHH
Confidence 4888988888888888766
No 12
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.29 E-value=6.9 Score=24.71 Aligned_cols=13 Identities=46% Similarity=1.104 Sum_probs=11.2
Q ss_pred CCCCcCCCCCCcc
Q 018132 60 PPRASHCSICNNC 72 (360)
Q Consensus 60 PpRs~HCsvC~rC 72 (360)
|+|.+-|++|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7899999999874
No 13
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.71 E-value=3.2 Score=28.68 Aligned_cols=31 Identities=32% Similarity=0.791 Sum_probs=22.8
Q ss_pred eecCCCCccc---CCCCcCCCCCCccccc--CC-ccC
Q 018132 50 KYCDTCMLYR---PPRASHCSICNNCVQR--FD-HHC 80 (360)
Q Consensus 50 KyC~tC~i~R---PpRs~HCsvC~rCV~r--fD-HHC 80 (360)
-.|+.|.+-| ..--.||..|+-|+.. +| |.|
T Consensus 18 yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~l~~~H~C 54 (56)
T d2dkta2 18 YHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 54 (56)
T ss_dssp EEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCC
T ss_pred ccCCCCCceeecCCccccccCccccccCcccCCCccc
Confidence 5788887766 3446899999999855 34 666
No 14
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.60 E-value=11 Score=25.14 Aligned_cols=22 Identities=32% Similarity=0.828 Sum_probs=16.0
Q ss_pred eeecCCCCcccCCCCcCCCCCCc
Q 018132 49 VKYCDTCMLYRPPRASHCSICNN 71 (360)
Q Consensus 49 ~KyC~tC~i~RPpRs~HCsvC~r 71 (360)
+..|..|+..-+.| +||..|..
T Consensus 6 ~~tCd~C~~~i~~R-y~C~~C~D 27 (52)
T d1tota1 6 VYTCNECKHHVETR-WHCTVCED 27 (52)
T ss_dssp CEEETTTTEEESSE-EEESSSSS
T ss_pred EEECcCCCCcCCCc-eECCCCCC
Confidence 45699998765544 89998864
Done!