Query 018134
Match_columns 360
No_of_seqs 45 out of 47
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06161 DUF975: Protein of un 45.5 80 0.0017 28.7 6.8 40 84-123 144-189 (243)
2 PF04911 ATP-synt_J: ATP synth 41.7 34 0.00073 26.8 3.2 17 245-261 10-26 (54)
3 COG4859 Uncharacterized protei 29.0 18 0.00039 31.3 -0.1 9 290-298 50-58 (105)
4 PRK00523 hypothetical protein; 27.7 50 0.0011 27.1 2.3 22 88-110 4-25 (72)
5 PF15052 TMEM169: TMEM169 prot 23.5 34 0.00073 31.0 0.6 86 197-307 24-109 (133)
6 PRK09855 PTS system N-acetylga 19.0 97 0.0021 30.3 2.8 40 53-102 222-261 (263)
7 COG3790 Predicted membrane pro 19.0 1.1E+02 0.0024 26.5 2.7 33 83-115 45-85 (97)
8 COG2981 CysZ Uncharacterized p 18.7 1.2E+02 0.0026 30.1 3.2 31 241-271 68-107 (250)
9 PRK00523 hypothetical protein; 18.6 1.6E+02 0.0035 24.2 3.5 26 240-265 1-26 (72)
10 PF04817 Umbravirus_LDM: Umbra 18.5 52 0.0011 32.2 0.8 30 106-135 131-160 (231)
No 1
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=45.50 E-value=80 Score=28.73 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHhhHHHhhhhhhhhhhHhh------hhhhhccCc
Q 018134 84 IPVFLILWPVVSIGASIIGGALYGFLSPIFA------TFDAVGEGK 123 (360)
Q Consensus 84 lP~~l~LWpvvgI~GSvl~G~gYGff~P~~a------TFeAvgeg~ 123 (360)
....+.+|.+++++..++.+..|.+-..+++ .+||+++.+
T Consensus 144 ~~~~~~~~~l~~~i~~i~~~~~y~~~~yil~d~~~~~~~~al~~S~ 189 (243)
T PF06161_consen 144 LLLLLVLLLLLLIIPGIIVSYSYSMVPYILADNPELGAFEALKRSR 189 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHH
Confidence 3344556667777777888888888766653 566666543
No 2
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=41.70 E-value=34 Score=26.80 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018134 245 LWPLAVVGAVLGSMVTS 261 (360)
Q Consensus 245 LWPl~Vvgavl~siisS 261 (360)
+||+.+-|+|..--++|
T Consensus 10 ~wPFf~ag~iv~ygv~k 26 (54)
T PF04911_consen 10 MWPFFAAGAIVYYGVNK 26 (54)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 79999998887654444
No 3
>COG4859 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.99 E-value=18 Score=31.34 Aligned_cols=9 Identities=56% Similarity=0.815 Sum_probs=7.0
Q ss_pred hhhhhcccc
Q 018134 290 SIYDEYSND 298 (360)
Q Consensus 290 a~fDEYtND 298 (360)
-+=|||+||
T Consensus 50 de~DeY~N~ 58 (105)
T COG4859 50 DETDEYTND 58 (105)
T ss_pred CcchhhccC
Confidence 456999997
No 4
>PRK00523 hypothetical protein; Provisional
Probab=27.70 E-value=50 Score=27.11 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhHHHhhhhhhhhh
Q 018134 88 LILWPVVSIGASIIGGALYGFLS 110 (360)
Q Consensus 88 l~LWpvvgI~GSvl~G~gYGff~ 110 (360)
+.+|..++|++ +++|+.-|||.
T Consensus 4 ~~l~I~l~i~~-li~G~~~Gffi 25 (72)
T PRK00523 4 IGLALGLGIPL-LIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH
Confidence 56788888888 88888888875
No 5
>PF15052 TMEM169: TMEM169 protein family
Probab=23.53 E-value=34 Score=30.95 Aligned_cols=86 Identities=27% Similarity=0.485 Sum_probs=52.2
Q ss_pred hheeeeeecccccchhhhcHHHHHhhhhcCCCCccceecccchhhHHHHHHHHHHHHHHHHHHHHHhhhhceeEEEeecc
Q 018134 197 VPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQES 276 (360)
Q Consensus 197 vplit~IAl~KsPyMLfKGW~RL~~DLigReGPfLEt~CVPfAGLaIlLWPl~Vvgavl~siisS~flG~yaaVVvyQE~ 276 (360)
.|.+++++.+-|=||=---|...+-- ...|=-|.--+ =++=+-|+.-|+..+ +.++-+|+|||++ | -
T Consensus 24 lP~vfv~s~~~sFY~GTlTWYNiF~~-y~Eers~~hKi--~~cPlLIl~YP~lIv-------~~t~~LglYaa~~--Q-l 90 (133)
T PF15052_consen 24 LPFVFVLSFIYSFYYGTLTWYNIFLV-YNEERSFWHKI--TVCPLLILFYPFLIV-------LVTLSLGLYAAFV--Q-L 90 (133)
T ss_pred hHHHHHHHHHHHhhhhhheeeeehee-eeccceeeeee--hhccHHHHHHHHHHH-------HHHHHHHHHHHhh--h-e
Confidence 45566666666666655556554421 23333333221 123467888887665 5567799999987 2 2
Q ss_pred hhhhhHHHHHHHhhhhhhcccccccCCCCCc
Q 018134 277 SLWFGLRYIIAALSIYDEYSNDILDMPEGSC 307 (360)
Q Consensus 277 S~~~GL~Yvva~va~fDEYtND~LylrEGSc 307 (360)
|. .|+|.-||+=|+..|=|
T Consensus 91 Sw------------~~~~W~~~v~D~EKGF~ 109 (133)
T PF15052_consen 91 SW------------SFGSWWNEVRDFEKGFY 109 (133)
T ss_pred ee------------eHHHHHHHhhHhhcchh
Confidence 33 36788888888888754
No 6
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=19.00 E-value=97 Score=30.32 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=26.0
Q ss_pred eeccchhhhhhhhhhhhcccchhHHHHHHHHhhHHHHHHHHHHHhhHHHh
Q 018134 53 GLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIG 102 (360)
Q Consensus 53 gLwP~Hv~WTyyci~rtkr~g~~lK~l~li~lP~~l~LWpvvgI~GSvl~ 102 (360)
||.|.-++.-.|..+|.|+..+. |+.++ -.++||+||.++
T Consensus 222 ~lLPl~~~~~~y~llkkK~~~~~-~li~~---------~~vi~iv~~~lG 261 (263)
T PRK09855 222 NILPMAYTLLMYYFLRVKKAHPV-LLIGV---------TFVLSIVCSAFG 261 (263)
T ss_pred chHHHHHHHHHHHHHHhcCCcHH-HHHHH---------HHHHHHHHHHhc
Confidence 57888888877778875665543 33222 236788888775
No 7
>COG3790 Predicted membrane protein [Function unknown]
Probab=18.99 E-value=1.1e+02 Score=26.48 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=28.0
Q ss_pred HhhHHHHHHHHHHHhhHHHhhhhh--------hhhhhHhhh
Q 018134 83 CIPVFLILWPVVSIGASIIGGALY--------GFLSPIFAT 115 (360)
Q Consensus 83 ~lP~~l~LWpvvgI~GSvl~G~gY--------Gff~P~~aT 115 (360)
.+|++..+..+-++.-+++-|+|+ |+|+|+.|-
T Consensus 45 s~~a~~~llmiWavca~~IhGVGFrpr~~~wqg~FsPlla~ 85 (97)
T COG3790 45 SLEAWHGLLMIWAVCAGVIHGVGFRPRSVLWQGIFSPLLAD 85 (97)
T ss_pred CchHHHHHHHHHHHHHHHHhcccCchHHHHHHHHhhhHHHH
Confidence 467888888888999999999997 899998873
No 8
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=18.71 E-value=1.2e+02 Score=30.08 Aligned_cols=31 Identities=32% Similarity=0.560 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHH---------HHHHHHHHHHhhhhceeEE
Q 018134 241 LAIILWPLAVVG---------AVLGSMVTSIFLGAYAGVV 271 (360)
Q Consensus 241 LaIlLWPl~Vvg---------avl~siisS~flG~yaaVV 271 (360)
|..++||+++++ |-++++++|.|.|..|=+|
T Consensus 68 Ls~v~~~la~L~lll~~~~lfs~v~~~IAapFng~lAEkv 107 (250)
T COG2981 68 LSYLLWILAVLLLLLVFAFLFSTVANLIAAPFNGLLAEKV 107 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 455777777665 5567888888888877665
No 9
>PRK00523 hypothetical protein; Provisional
Probab=18.56 E-value=1.6e+02 Score=24.22 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Q 018134 240 GLAIILWPLAVVGAVLGSMVTSIFLG 265 (360)
Q Consensus 240 GLaIlLWPl~Vvgavl~siisS~flG 265 (360)
|+++-+|=+.++.+.+.+.+..||++
T Consensus 1 ~~~~~l~I~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 1 GLAIGLALGLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777776666654
No 10
>PF04817 Umbravirus_LDM: Umbravirus long distance movement (LDM) family ; InterPro: IPR006902 The long distance movement protein of Umbraviruses mediates the movement of viral RNA through the phloem of infected plants [].
Probab=18.51 E-value=52 Score=32.15 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=26.5
Q ss_pred hhhhhhHhhhhhhhccCcccceEEEEeeCc
Q 018134 106 YGFLSPIFATFDAVGEGKTNDIFHCFYDGT 135 (360)
Q Consensus 106 YGff~P~~aTFeAvgeg~~~k~~HCf~DGT 135 (360)
-||+.||+.||+-.++|...-|.||+=+..
T Consensus 131 dglLspLLdt~~g~~~g~a~~ll~~i~a~R 160 (231)
T PF04817_consen 131 DGLLSPLLDTLDGQGWGPAAVLLYCIGALR 160 (231)
T ss_pred hhhhHHHHHHHhccccCChhhhhccchhhh
Confidence 478999999999999999999999986654
Done!