Query 018134
Match_columns 360
No_of_seqs 45 out of 47
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 10:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oqj_C Peptide 2G12.1 (ACPPSHV 48.3 4.2 0.00014 26.4 0.2 14 297-310 5-18 (26)
2 1srz_A Gamma-aminobutyric acid 31.9 22 0.00076 25.3 1.9 21 125-146 48-68 (68)
3 3ktz_A Ribosome-inactivating p 28.4 26 0.00088 32.3 2.2 40 144-183 4-43 (251)
4 4aor_D Trypsin inhibitor 3; hy 23.5 16 0.00054 25.5 -0.1 15 301-315 19-33 (37)
5 2k5n_A Putative cold-shock pro 15.3 34 0.0012 26.1 0.0 16 105-129 15-30 (74)
6 3tvj_A Mannan-binding lectin s 15.0 68 0.0023 23.8 1.7 22 126-147 50-76 (86)
7 1o98_A 2,3-bisphosphoglycerate 14.9 62 0.0021 32.8 1.9 17 118-134 136-152 (511)
8 2yra_A Seizure 6-like protein 14.8 49 0.0017 23.7 0.8 21 126-146 46-66 (74)
9 1spf_A Pulmonary surfactant-as 14.5 1.8E+02 0.0062 20.1 3.5 26 76-104 10-35 (35)
10 1wuc_A Bouganin; alpha-beta pr 14.1 56 0.0019 30.1 1.2 37 145-183 6-42 (250)
No 1
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=48.33 E-value=4.2 Score=26.40 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=11.5
Q ss_pred cccccCCCCCcCCC
Q 018134 297 NDILDMPEGSCFPR 310 (360)
Q Consensus 297 ND~LylrEGScfPR 310 (360)
..+||||.|+|+-.
T Consensus 5 shvldmrsgtclaa 18 (26)
T 2oqj_C 5 SHVLDMRSGTCLAA 18 (26)
T ss_pred hheeeccCCceEee
Confidence 35899999999853
No 2
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B) receptor, CIS-trans isomerization, CCP module, sushi domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB: 1ss2_A
Probab=31.87 E-value=22 Score=25.33 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=16.8
Q ss_pred cceEEEEeeCceeeeeeeeEEE
Q 018134 125 NDIFHCFYDGTWSTIKHSFTIV 146 (360)
Q Consensus 125 ~k~~HCf~DGTwsTI~gSCTVV 146 (360)
++..+|- ||+||.-.-.|..|
T Consensus 48 ~~~~~C~-~g~Ws~~~P~C~~i 68 (68)
T 1srz_A 48 SSRSVCS-QGQWSTPKPHCQVN 68 (68)
T ss_dssp CCEEEEE-TTEESSCCCCEEEC
T ss_pred CCcCEEC-CCEEeCCCCEeeEC
Confidence 3578998 99999887788653
No 3
>3ktz_A Ribosome-inactivating protein gelonin; plant seeds, glycosidase, disulfide bond, glycoprotein, hydrolase, plant defense; HET: NAG; 1.60A {Gelonium multiflorum} SCOP: d.165.1.0 PDB: 3ku0_A*
Probab=28.37 E-value=26 Score=32.32 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=30.9
Q ss_pred EEEeeccccccccchhhhHHHhhcCCCCCceEEEEEecch
Q 018134 144 TIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIP 183 (360)
Q Consensus 144 TVVrDf~D~cfHSYfs~mdeLr~~~~~~~~p~eIrL~~lP 183 (360)
||.=|...-.=-+|-++|++||+.+.+..+.++|.++.-|
T Consensus 4 ~v~f~~~~at~~~Y~~FI~~LR~~l~~~~~~~~iPvL~~~ 43 (251)
T 3ktz_A 4 TVSFSTKGATYITYVNFLNELRVKLKPEGNSHGIPLLRKK 43 (251)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHTCCCSEETTEEBCCSC
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHhccCCccCCceecCCC
Confidence 3444555555578999999999999877778899998765
No 4
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=23.48 E-value=16 Score=25.51 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=11.9
Q ss_pred cCCCCCcCCCccccc
Q 018134 301 DMPEGSCFPRPQYRK 315 (360)
Q Consensus 301 ylrEGScfPRP~YRk 315 (360)
|--.|||.|.|+-|-
T Consensus 19 ~ccsg~cvphp~lri 33 (37)
T 4aor_D 19 QCCSGACVPHPILRI 33 (37)
T ss_dssp GBTTSCEEECSSBSS
T ss_pred ccccccccCCCeeEE
Confidence 345699999999883
No 5
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=15.26 E-value=34 Score=26.07 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=11.2
Q ss_pred hhhhhhhHhhhhhhhccCcccceEE
Q 018134 105 LYGFLSPIFATFDAVGEGKTNDIFH 129 (360)
Q Consensus 105 gYGff~P~~aTFeAvgeg~~~k~~H 129 (360)
||||++|- +|.++ |+|
T Consensus 15 GfGFI~~~--------dg~~d-FvH 30 (74)
T 2k5n_A 15 GFGFIKDE--------NGDNR-YFH 30 (74)
T ss_dssp TEEEEEES--------SSCEE-EEE
T ss_pred CeEEEecC--------CCCce-EEE
Confidence 78888872 45566 777
No 6
>3tvj_A Mannan-binding lectin serine protease 2 A chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens}
Probab=14.98 E-value=68 Score=23.82 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.5
Q ss_pred ceEEEEeeCcee-----eeeeeeEEEe
Q 018134 126 DIFHCFYDGTWS-----TIKHSFTIVR 147 (360)
Q Consensus 126 k~~HCf~DGTws-----TI~gSCTVVr 147 (360)
.-++|-.||+|| .---.|.-|.
T Consensus 50 ~~~~C~~~G~Ws~~~~~~~~P~C~~vC 76 (86)
T 3tvj_A 50 GKYVCDADGFWTSSKGEKSLPVCEPVC 76 (86)
T ss_dssp CEEEECTTSSEEETTSCCSCCCEEECC
T ss_pred CEEEECCCCCCCcCCCCCCCCeeECcC
Confidence 578999999999 3455677653
No 7
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=14.94 E-value=62 Score=32.78 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=14.0
Q ss_pred hhccCcccceEEEEeeC
Q 018134 118 AVGEGKTNDIFHCFYDG 134 (360)
Q Consensus 118 Avgeg~~~k~~HCf~DG 134 (360)
|..+|.++-++|||.||
T Consensus 136 a~~~g~~~v~~H~~~dG 152 (511)
T 1o98_A 136 AAKEGVKRVYIHGFLDG 152 (511)
T ss_dssp HHHTTCCCEEEEEEECS
T ss_pred HHHCCCCeEEEEEEccC
Confidence 34478888899999999
No 8
>2yra_A Seizure 6-like protein isoform 3; disulfide bond, sushi domain, SCR, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.83 E-value=49 Score=23.73 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.8
Q ss_pred ceEEEEeeCceeeeeeeeEEE
Q 018134 126 DIFHCFYDGTWSTIKHSFTIV 146 (360)
Q Consensus 126 k~~HCf~DGTwsTI~gSCTVV 146 (360)
+-.+|--||+||--.-.|..|
T Consensus 46 ~~~~C~~~g~Ws~~~P~C~~v 66 (74)
T 2yra_A 46 DTLTCQWDLSWSSDPPFCEKT 66 (74)
T ss_dssp SEEEBCTTSCBSSCCCEEEEC
T ss_pred CceEECCCCEECCCCCEEeec
Confidence 568999999999877888765
No 9
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=14.45 E-value=1.8e+02 Score=20.10 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=17.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHhhh
Q 018134 76 LKLLTCICIPVFLILWPVVSIGASIIGGA 104 (360)
Q Consensus 76 lK~l~li~lP~~l~LWpvvgI~GSvl~G~ 104 (360)
+|=++++.+-+ ...++-|+|.+++|+
T Consensus 10 lKrLlivVvVv---VlvVvVivGaLLmGL 35 (35)
T 1spf_A 10 LKRLLVVVVVV---VLVVVVIVGALLMGL 35 (35)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHCC
T ss_pred hheEEEEEeee---hhhHHHHHHHHHccC
Confidence 55555554433 335678999999985
No 10
>1wuc_A Bouganin; alpha-beta protein; 1.80A {Bougainvillea spectabilis} PDB: 3ctk_A
Probab=14.10 E-value=56 Score=30.13 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=26.5
Q ss_pred EEeeccccccccchhhhHHHhhcCCCCCceEEEEEecch
Q 018134 145 IVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIP 183 (360)
Q Consensus 145 VVrDf~D~cfHSYfs~mdeLr~~~~~~~~p~eIrL~~lP 183 (360)
|.=|...- -+|-++|++||+++......++|.++.-|
T Consensus 6 v~f~~~~a--~~Y~~FI~~LR~~l~~~~~~~~ipvL~~~ 42 (250)
T 1wuc_A 6 VSFNLGEA--YEYPTFIQDLRNELAKGTPVCQLPVTLQT 42 (250)
T ss_dssp EEEETTCG--GGHHHHHHHHHHHHCCSCCBTTBCBCCSC
T ss_pred EEEEeCCc--hhHHHHHHHHHHHhccCCccCCeeecCCC
Confidence 33444433 88999999999998765556678777644
Done!