Query 018135
Match_columns 360
No_of_seqs 262 out of 1421
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 1.4E-36 4.9E-41 242.0 -1.9 87 2-90 1-87 (90)
2 1egw_A MADS box transcription 100.0 6.4E-36 2.2E-40 232.5 -0.6 73 2-76 1-73 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 8.3E-34 2.8E-38 229.8 -2.1 72 1-74 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 1.3E-33 4.6E-38 225.7 -3.9 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 4.3E-33 1.5E-37 227.0 -3.6 70 1-72 9-78 (103)
6 2oa5_A Hypothetical protein BQ 64.3 24 0.00082 28.4 7.2 59 111-169 7-68 (110)
7 3twe_A Alpha4H; unknown functi 41.6 43 0.0015 19.6 3.8 14 114-127 10-23 (27)
8 2l5g_A GPS2 protein, G protein 36.0 46 0.0016 21.6 3.7 18 156-173 19-36 (38)
9 1g6u_A Domain swapped dimer; d 34.0 1E+02 0.0034 20.3 6.9 26 144-169 16-41 (48)
10 3ghg_A Fibrinogen alpha chain; 33.1 2E+02 0.0067 29.3 9.6 17 144-160 172-188 (562)
11 3nrf_A APAG protein; structura 31.3 5.4 0.00018 32.0 -1.6 40 11-55 21-60 (106)
12 2dfs_A Myosin-5A; myosin-V, in 29.9 2.7E+02 0.0092 30.7 11.0 7 174-180 1037-1043(1080)
13 2l5g_B Putative uncharacterize 28.8 75 0.0026 21.2 3.9 24 113-136 10-33 (42)
14 3tnu_B Keratin, type II cytosk 28.0 2.3E+02 0.008 22.7 8.6 52 114-173 52-103 (129)
15 3tnu_A Keratin, type I cytoske 27.3 2.3E+02 0.0079 22.8 7.7 52 114-173 54-105 (131)
16 2yy0_A C-MYC-binding protein; 27.0 83 0.0028 21.8 4.2 19 113-131 20-38 (53)
17 2yy0_A C-MYC-binding protein; 25.0 88 0.003 21.7 4.0 23 114-136 28-50 (53)
18 1m1j_B Fibrinogen beta chain; 24.8 4.2E+02 0.014 26.3 10.5 44 26-74 54-97 (464)
19 3na7_A HP0958; flagellar bioge 24.8 1.5E+02 0.0052 26.6 6.8 24 111-134 89-112 (256)
20 1kaf_A Transcription regulator 23.4 23 0.00079 28.4 0.8 53 6-75 23-76 (108)
21 2v66_B Nuclear distribution pr 22.5 3E+02 0.01 22.0 8.8 14 149-162 78-91 (111)
22 1gk4_A Vimentin; intermediate 22.5 2.4E+02 0.0083 21.0 7.5 51 114-172 3-53 (84)
23 1m1j_C Fibrinogen gamma chain; 20.8 5.2E+02 0.018 25.2 10.1 19 57-75 18-36 (409)
24 2k48_A Nucleoprotein; viral pr 20.5 2.3E+02 0.0077 22.6 5.9 13 140-153 68-80 (107)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.4e-36 Score=242.02 Aligned_cols=87 Identities=33% Similarity=0.682 Sum_probs=77.6
Q ss_pred CCcccceEEecCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHhhcCHHHHHH
Q 018135 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAK 81 (360)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~er~k 81 (360)
||+||+|++|||.++|||||+|||+||||||+|||||||||||||||||+||+|+|++ ++|++||+||+++++..+.+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s--~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC--CCHHHHHHHHHhcCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999987 79999999999988765444
Q ss_pred HHHHHHHHH
Q 018135 82 RKLESLEAL 90 (360)
Q Consensus 82 ~~~e~~e~L 90 (360)
...+..+++
T Consensus 79 ~~~d~~e~~ 87 (90)
T 3p57_A 79 TNSDIVEAL 87 (90)
T ss_dssp CHHHHHHHH
T ss_pred ChHhHHHHH
Confidence 334444443
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=6.4e-36 Score=232.53 Aligned_cols=73 Identities=36% Similarity=0.741 Sum_probs=69.6
Q ss_pred CCcccceEEecCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHhhcCH
Q 018135 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTP 76 (360)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~ 76 (360)
||+||+|++|||.++|||||+|||+||||||+||||||||||||||||++||+|+|++ ++|++||+||++.++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s--~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC--CCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999986 789999999998764
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.97 E-value=8.3e-34 Score=229.84 Aligned_cols=72 Identities=38% Similarity=0.557 Sum_probs=69.3
Q ss_pred CCCcccceEEecCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHhhc
Q 018135 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL 74 (360)
Q Consensus 1 MGR~Ki~IkrIen~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~~~ 74 (360)
|||+||+||+|||.++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||+||...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--ps~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC--CCHHHHHHHhhCC
Confidence 89999999999999999999999999999999999999999999999999999999987 7899999999753
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=1.3e-33 Score=225.74 Aligned_cols=70 Identities=37% Similarity=0.556 Sum_probs=67.7
Q ss_pred CCCcccceEEecCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHh
Q 018135 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFA 72 (360)
Q Consensus 1 MGR~Ki~IkrIen~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~ 72 (360)
|||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s--~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC--GGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC--CCHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999987 89999999664
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=4.3e-33 Score=227.02 Aligned_cols=70 Identities=37% Similarity=0.556 Sum_probs=67.4
Q ss_pred CCCcccceEEecCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHh
Q 018135 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFA 72 (360)
Q Consensus 1 MGR~Ki~IkrIen~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~ 72 (360)
|||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--~~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC--GGGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC--ccHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999987 79999998653
No 6
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=64.26 E-value=24 Score=28.42 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc---cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018135 111 TQTVEELTHQVRILQAQLTEVHQRLSY---WSNPGNIESIEHLRQMENSLRESINQICLHKE 169 (360)
Q Consensus 111 ~q~vE~L~~ei~~Lq~qle~lq~rlr~---~~g~d~~LSleEL~~LE~qLe~sL~~IR~RK~ 169 (360)
...+|+|..++.+|+-++..|.++++. -.+.+..|+-.+=+.+--+.-.+|...-++|-
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KI 68 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKI 68 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999998874 23445789988877777776666666555553
No 7
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=41.64 E-value=43 Score=19.62 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 018135 114 VEELTHQVRILQAQ 127 (360)
Q Consensus 114 vE~L~~ei~~Lq~q 127 (360)
+|+|+..+++|+.+
T Consensus 10 ledlqerlrklrkk 23 (27)
T 3twe_A 10 LEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 8
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.98 E-value=46 Score=21.61 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018135 156 SLRESINQICLHKENFGK 173 (360)
Q Consensus 156 qLe~sL~~IR~RK~qL~~ 173 (360)
.|+..|..++.-|.||+.
T Consensus 19 ~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 19 KLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555555543
No 9
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=34.03 E-value=1e+02 Score=20.32 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018135 144 IESIEHLRQMENSLRESINQICLHKE 169 (360)
Q Consensus 144 ~LSleEL~~LE~qLe~sL~~IR~RK~ 169 (360)
..|.+||-.||..|...-+++-.-|.
T Consensus 16 gfspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889998888777665555544443
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.06 E-value=2e+02 Score=29.30 Aligned_cols=17 Identities=6% Similarity=0.167 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHHHHH
Q 018135 144 IESIEHLRQMENSLRES 160 (360)
Q Consensus 144 ~LSleEL~~LE~qLe~s 160 (360)
.++++..+.+++||+..
T Consensus 172 ~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 172 EVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHH
Confidence 45788888888888876
No 11
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=31.30 E-value=5.4 Score=32.04 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=32.3
Q ss_pred ecCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCc
Q 018135 11 LESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRST 55 (360)
Q Consensus 11 Ien~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~ 55 (360)
|.++.-..+||-=.-.-|.+|.-+||.+| ++.|++.||-|
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef 60 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSF 60 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEE
Confidence 34455566778778889999999999777 99999999944
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.95 E-value=2.7e+02 Score=30.73 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=2.8
Q ss_pred Hhhhhhh
Q 018135 174 QQLMSLE 180 (360)
Q Consensus 174 ~ql~~Lq 180 (360)
+|+++|.
T Consensus 1037 qq~~~l~ 1043 (1080)
T 2dfs_A 1037 TEKEELN 1043 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 13
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.81 E-value=75 Score=21.16 Aligned_cols=24 Identities=4% Similarity=0.437 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 018135 113 TVEELTHQVRILQAQLTEVHQRLS 136 (360)
Q Consensus 113 ~vE~L~~ei~~Lq~qle~lq~rlr 136 (360)
.++....||.+.+.+|.+++++++
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666643
No 14
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.03 E-value=2.3e+02 Score=22.70 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018135 114 VEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGK 173 (360)
Q Consensus 114 vE~L~~ei~~Lq~qle~lq~rlr~~~g~d~~LSleEL~~LE~qLe~sL~~IR~RK~qL~~ 173 (360)
++.++.....|...|.+++.+.. .-+++++..-..|+..|.++|.--...+.
T Consensus 52 l~~l~~~~~~LE~~l~e~e~~~~--------~~l~~~q~~i~~lE~eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 52 IDNVKKQCANLQNAIADAEQRGE--------LALKDARNKLAELEEALQKAKQDMARLLR 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444445555555555444431 23555555556677777777776554433
No 15
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.32 E-value=2.3e+02 Score=22.85 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018135 114 VEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGK 173 (360)
Q Consensus 114 vE~L~~ei~~Lq~qle~lq~rlr~~~g~d~~LSleEL~~LE~qLe~sL~~IR~RK~qL~~ 173 (360)
++.++.....|...|.+++.+.. .-+++++..-..|+..|.++|.--...+.
T Consensus 54 l~~l~~~~~sLE~~l~e~e~~~~--------~~l~~~q~~i~~lE~eL~~~r~em~~ql~ 105 (131)
T 3tnu_A 54 LQSQLSMKASLENSLEETKGRYC--------MQLAQIQEMIGSVEEQLAQLRCEMEQQNQ 105 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555554444431 23455555556677777777776554443
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.05 E-value=83 Score=21.82 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 018135 113 TVEELTHQVRILQAQLTEV 131 (360)
Q Consensus 113 ~vE~L~~ei~~Lq~qle~l 131 (360)
++|.|+.+...|+.++..+
T Consensus 20 d~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.05 E-value=88 Score=21.69 Aligned_cols=23 Identities=9% Similarity=0.291 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 018135 114 VEELTHQVRILQAQLTEVHQRLS 136 (360)
Q Consensus 114 vE~L~~ei~~Lq~qle~lq~rlr 136 (360)
.++|+.++..|+.+++++..++.
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777777777664
No 18
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.84 E-value=4.2e+02 Score=26.35 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=22.6
Q ss_pred cchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHhhc
Q 018135 26 NGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL 74 (360)
Q Consensus 26 ~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~~~ 74 (360)
.|+-||.-|.. =||+=|.+.- +.+-.+|.+...+.+.|-+|+.-
T Consensus 54 ~~~~~~~~~~~--~~a~~c~~~~---~~~G~~CPTtC~l~D~L~k~q~~ 97 (464)
T 1m1j_B 54 KQAMKKGPIIY--PDAGGCKHPL---DELGVLCPTGCELQTTLLKQEKT 97 (464)
T ss_dssp ---------CC--CCCSCEECSS---TTTCEEEECTTHHHHHHHHHHHH
T ss_pred chhhccCcccC--CCCCCccccC---CCccCcCCCccHHHHHHHHhhhh
Confidence 35567777766 6777776643 34433444467888999888763
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.81 E-value=1.5e+02 Score=26.64 Aligned_cols=24 Identities=8% Similarity=0.205 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 018135 111 TQTVEELTHQVRILQAQLTEVHQR 134 (360)
Q Consensus 111 ~q~vE~L~~ei~~Lq~qle~lq~r 134 (360)
+.++..|..++..++.++..++..
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~e 112 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANRE 112 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 20
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=23.37 E-value=23 Score=28.42 Aligned_cols=53 Identities=28% Similarity=0.396 Sum_probs=38.3
Q ss_pred cceEEe-cCCCCcceeecccccchhhhhhhhhcccCcceeccccCCCCCCccccCCCcchHHHHHHHhhcC
Q 018135 6 LKIKRL-ESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLT 75 (360)
Q Consensus 6 i~IkrI-en~~~RqvTFsKRr~GL~KKA~ELSvLCDaeVaLIIFSp~GKl~~f~s~~ssme~ILeRY~~~s 75 (360)
+++|.+ ++.+|=.|+|.||-.|+-+ .| | ..+|+.=.|+. .-.++++..|..+-
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiRq--fE--------i-----~n~G~fRI~gY--k~se~~~~~f~slG 76 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIRN--FE--------I-----NNNGNMRIFGY--KMMEHHIQKFTDIG 76 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEEE--EE--------E-----CTTSEEEEEEE--SCCHHHHHHHHTTT
T ss_pred ceeeeeEeeccceEEeeecccCceeE--EE--------E-----ecCCcEEEEEe--cCCHHHHHHHHhcC
Confidence 778877 7899999999999999842 22 2 35676666654 45677888887653
No 21
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.52 E-value=3e+02 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 018135 149 HLRQMENSLRESIN 162 (360)
Q Consensus 149 EL~~LE~qLe~sL~ 162 (360)
-|..+|..+..++.
T Consensus 78 SLeD~E~k~n~aiE 91 (111)
T 2v66_B 78 SLEDFEQRLNQAIE 91 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 33344444444443
No 22
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.45 E-value=2.4e+02 Score=20.97 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018135 114 VEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFG 172 (360)
Q Consensus 114 vE~L~~ei~~Lq~qle~lq~rlr~~~g~d~~LSleEL~~LE~qLe~sL~~IR~RK~qL~ 172 (360)
++.++.....|...+.+++.+.. .-+++++..-..|+..|.++|.--...+
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~--------~~~~~~q~~i~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFA--------VEAANYQDTIGRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555432 2345555555556666666666554433
No 23
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.83 E-value=5.2e+02 Score=25.17 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=14.2
Q ss_pred ccCCCcchHHHHHHHhhcC
Q 018135 57 FHGQRSNIEEVIARFAQLT 75 (360)
Q Consensus 57 f~s~~ssme~ILeRY~~~s 75 (360)
+|.+...+.++|.+|++-.
T Consensus 18 ~CPT~C~i~d~L~k~e~~V 36 (409)
T 1m1j_C 18 YCPTTCGIADFFNKYRLTT 36 (409)
T ss_dssp EEECTTHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHhcc
Confidence 4443688999999999743
No 24
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.49 E-value=2.3e+02 Score=22.56 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=5.2
Q ss_pred CCCCCCCHHHHHHH
Q 018135 140 NPGNIESIEHLRQM 153 (360)
Q Consensus 140 g~d~~LSleEL~~L 153 (360)
+|| .++..-|++-
T Consensus 68 DPD-evNK~tl~~R 80 (107)
T 2k48_A 68 DPD-DVNKSTLQNR 80 (107)
T ss_dssp CCC-HHHHHHHHHH
T ss_pred CCc-HHHHHHHHHH
Confidence 444 2343334333
Done!