Query 018136
Match_columns 360
No_of_seqs 235 out of 630
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2863 RNA lariat debranching 100.0 2.4E-99 5E-104 733.3 13.9 350 1-353 49-406 (456)
2 cd00844 MPP_Dbr1_N Dbr1 RNA la 100.0 3.2E-62 7E-67 466.9 19.0 211 1-211 47-262 (262)
3 PF05011 DBR1: Lariat debranch 100.0 1.5E-37 3.3E-42 273.4 13.4 133 187-319 1-145 (145)
4 KOG2476 Uncharacterized conser 100.0 2.2E-33 4.7E-38 280.1 13.3 184 12-218 50-243 (528)
5 cd07380 MPP_CWF19_N Schizosacc 99.9 1.5E-26 3.3E-31 204.7 9.2 101 14-204 44-150 (150)
6 cd07392 MPP_PAE1087 Pyrobaculu 99.3 4E-11 8.7E-16 106.0 14.4 141 22-201 47-187 (188)
7 cd07388 MPP_Tt1561 Thermus the 99.2 7.5E-11 1.6E-15 111.0 12.8 146 25-207 60-209 (224)
8 KOG3947 Phosphoesterases [Gene 98.7 8.8E-08 1.9E-12 92.2 9.2 133 52-219 162-299 (305)
9 PF14582 Metallophos_3: Metall 98.5 9.4E-07 2E-11 83.5 11.9 130 25-183 87-219 (255)
10 COG2129 Predicted phosphoester 98.3 1.1E-05 2.3E-10 76.1 12.0 141 25-203 62-203 (226)
11 cd07397 MPP_DevT Myxococcus xa 98.2 6.2E-06 1.3E-10 78.6 10.0 165 25-204 48-234 (238)
12 PHA03008 hypothetical protein; 98.0 1.5E-05 3.3E-10 73.5 7.8 97 54-180 99-202 (234)
13 cd07402 MPP_GpdQ Enterobacter 98.0 0.0001 2.3E-09 68.1 11.9 131 25-187 68-199 (240)
14 TIGR03729 acc_ester putative p 97.9 5E-05 1.1E-09 71.2 9.3 152 26-201 60-235 (239)
15 cd07379 MPP_239FB Homo sapiens 97.6 0.0003 6.5E-09 60.1 7.6 68 118-201 67-134 (135)
16 cd07393 MPP_DR1119 Deinococcus 97.5 0.0017 3.6E-08 61.0 12.7 127 25-186 69-209 (232)
17 PF00149 Metallophos: Calcineu 97.5 0.0002 4.3E-09 58.7 5.5 53 117-182 148-200 (200)
18 cd07404 MPP_MS158 Microscilla 97.5 0.00083 1.8E-08 59.1 9.4 55 119-185 97-152 (166)
19 cd07403 MPP_TTHA0053 Thermus t 96.9 0.003 6.6E-08 54.1 6.9 68 119-203 56-123 (129)
20 cd00838 MPP_superfamily metall 96.9 0.0024 5.2E-08 51.5 6.0 50 122-186 70-119 (131)
21 PRK11148 cyclic 3',5'-adenosin 96.5 0.027 5.9E-07 53.9 11.2 28 158-185 182-210 (275)
22 cd07396 MPP_Nbla03831 Homo sap 96.5 0.033 7.1E-07 53.2 11.3 25 159-183 204-229 (267)
23 cd08163 MPP_Cdc1 Saccharomyces 96.5 0.05 1.1E-06 52.3 12.6 67 119-186 163-232 (257)
24 cd00839 MPP_PAPs purple acid p 96.1 0.033 7.1E-07 53.2 9.2 127 26-182 67-205 (294)
25 cd07400 MPP_YydB Bacillus subt 96.0 0.025 5.4E-07 48.2 7.0 49 122-186 81-129 (144)
26 cd00840 MPP_Mre11_N Mre11 nucl 95.8 0.01 2.2E-07 53.8 3.9 133 13-184 62-203 (223)
27 cd07385 MPP_YkuE_C Bacillus su 95.7 0.04 8.7E-07 50.2 7.8 59 16-76 53-113 (223)
28 PRK04036 DNA polymerase II sma 95.7 0.088 1.9E-06 55.4 11.0 69 10-79 314-388 (504)
29 cd07401 MPP_TMEM62_N Homo sapi 95.6 0.13 2.8E-06 49.0 10.9 47 119-184 166-212 (256)
30 cd07395 MPP_CSTP1 Homo sapiens 95.2 0.17 3.7E-06 47.7 10.3 142 15-185 75-221 (262)
31 cd07378 MPP_ACP5 Homo sapiens 95.1 0.12 2.6E-06 49.0 8.9 64 119-203 167-230 (277)
32 PLN02533 probable purple acid 94.4 0.35 7.7E-06 49.8 11.1 125 26-185 197-336 (427)
33 TIGR01854 lipid_A_lpxH UDP-2,3 94.2 0.88 1.9E-05 42.5 12.3 50 160-211 175-224 (231)
34 cd07409 MPP_CD73_N CD73 ecto-5 94.1 0.56 1.2E-05 45.3 11.0 54 25-79 80-149 (281)
35 cd07406 MPP_CG11883_N Drosophi 94.0 0.57 1.2E-05 44.6 10.8 50 30-79 73-137 (257)
36 TIGR01530 nadN NAD pyrophospha 93.9 0.38 8.3E-06 51.1 10.3 48 30-77 84-146 (550)
37 PRK05340 UDP-2,3-diacylglucosa 93.3 3.2 7E-05 38.9 14.4 54 158-213 175-228 (241)
38 cd07412 MPP_YhcR_N Bacillus su 93.1 0.92 2E-05 44.0 10.7 28 51-78 121-155 (288)
39 cd00841 MPP_YfcE Escherichia c 92.9 0.61 1.3E-05 40.2 8.2 37 163-205 95-131 (155)
40 cd07399 MPP_YvnB Bacillus subt 91.2 1.7 3.7E-05 40.2 9.6 66 157-222 135-205 (214)
41 TIGR00040 yfcE phosphoesterase 90.5 1.6 3.4E-05 38.1 8.3 38 162-205 98-135 (158)
42 cd07386 MPP_DNA_pol_II_small_a 90.5 0.53 1.1E-05 44.2 5.6 65 14-79 69-139 (243)
43 cd08162 MPP_PhoA_N Synechococc 89.7 8.4 0.00018 38.1 13.5 49 31-79 82-165 (313)
44 cd00845 MPP_UshA_N_like Escher 89.4 3.4 7.4E-05 38.5 10.1 51 29-79 71-136 (252)
45 cd07405 MPP_UshA_N Escherichia 89.2 3.8 8.3E-05 39.7 10.6 52 27-79 75-138 (285)
46 cd00842 MPP_ASMase acid sphing 88.0 2.3 4.9E-05 40.9 8.1 28 158-185 235-264 (296)
47 COG1768 Predicted phosphohydro 87.9 5.5 0.00012 37.2 10.0 119 25-181 71-198 (230)
48 PF12850 Metallophos_2: Calcin 87.9 4.3 9.4E-05 34.2 9.0 58 119-205 81-138 (156)
49 COG0737 UshA 5'-nucleotidase/2 86.5 2.3 5E-05 44.6 7.7 48 31-78 106-167 (517)
50 cd07411 MPP_SoxB_N Thermus the 86.2 8.4 0.00018 36.7 10.8 52 28-79 83-147 (264)
51 cd07410 MPP_CpdB_N Escherichia 86.0 9.2 0.0002 36.5 11.0 50 30-79 85-148 (277)
52 COG1409 Icc Predicted phosphoh 85.5 5.5 0.00012 37.0 9.1 35 7-45 49-83 (301)
53 PRK09558 ushA bifunctional UDP 85.4 6.1 0.00013 41.9 10.3 48 31-78 112-172 (551)
54 cd07381 MPP_CapA CapA and rela 83.5 8.9 0.00019 35.8 9.5 61 20-81 70-142 (239)
55 PRK09419 bifunctional 2',3'-cy 82.8 6.8 0.00015 45.5 10.0 49 30-78 726-801 (1163)
56 cd07398 MPP_YbbF-LpxH Escheric 82.6 6 0.00013 35.7 7.8 40 158-203 177-216 (217)
57 KOG2047 mRNA splicing factor [ 79.7 0.95 2.1E-05 49.1 1.6 24 336-359 790-813 (835)
58 cd07383 MPP_Dcr2 Saccharomyces 78.8 5.1 0.00011 36.2 5.9 27 156-182 150-176 (199)
59 PHA02546 47 endonuclease subun 78.6 2.6 5.6E-05 42.0 4.2 49 24-75 73-128 (340)
60 cd07387 MPP_PolD2_C PolD2 (DNA 74.3 6.1 0.00013 38.3 5.4 68 10-78 78-152 (257)
61 smart00854 PGA_cap Bacterial c 72.8 21 0.00046 33.4 8.5 59 21-80 67-137 (239)
62 KOG2863 RNA lariat debranching 71.9 2.7 5.8E-05 42.9 2.3 62 224-285 357-423 (456)
63 cd07408 MPP_SA0022_N Staphyloc 70.2 5.5 0.00012 37.8 4.0 50 30-79 72-135 (257)
64 cd08166 MPP_Cdc1_like_1 unchar 68.9 5.6 0.00012 37.1 3.6 30 158-187 123-152 (195)
65 PRK09418 bifunctional 2',3'-cy 61.1 24 0.00053 39.5 7.3 48 31-78 133-208 (780)
66 PTZ00422 glideosome-associated 59.5 82 0.0018 32.6 10.3 47 119-182 214-260 (394)
67 cd07394 MPP_Vps29 Homo sapiens 59.2 33 0.00071 31.0 6.7 59 118-205 77-135 (178)
68 PF13483 Lactamase_B_3: Beta-l 58.0 16 0.00035 31.8 4.4 123 26-178 35-163 (163)
69 cd07407 MPP_YHR202W_N Saccharo 54.9 13 0.00029 36.2 3.6 48 31-78 88-155 (282)
70 TIGR00583 mre11 DNA repair pro 51.1 32 0.00069 35.5 5.8 17 25-41 108-124 (405)
71 KOG2679 Purple (tartrate-resis 48.2 24 0.00051 35.1 4.1 141 15-182 102-255 (336)
72 COG0420 SbcD DNA repair exonuc 47.6 9.5 0.00021 38.3 1.4 33 12-44 60-92 (390)
73 PRK09419 bifunctional 2',3'-cy 44.3 51 0.0011 38.4 6.7 48 31-78 130-198 (1163)
74 cd08165 MPP_MPPE1 human MPPE1 42.7 21 0.00045 31.5 2.6 19 165-183 117-135 (156)
75 KOG3325 Membrane coat complex 41.5 39 0.00084 30.8 4.1 17 62-78 72-88 (183)
76 PRK09420 cpdB bifunctional 2', 40.6 87 0.0019 34.3 7.4 46 31-76 113-180 (649)
77 KOG1378 Purple acid phosphatas 39.1 2.1E+02 0.0046 30.2 9.6 125 25-181 206-343 (452)
78 TIGR00619 sbcd exonuclease Sbc 38.9 16 0.00036 34.7 1.4 46 16-62 63-109 (253)
79 PRK10966 exonuclease subunit S 38.2 20 0.00044 36.8 2.0 45 17-62 64-108 (407)
80 TIGR01390 CycNucDiestase 2',3' 37.4 94 0.002 33.9 7.1 48 31-78 90-159 (626)
81 PRK11907 bifunctional 2',3'-cy 31.2 1.3E+02 0.0028 34.1 7.0 47 31-77 204-272 (814)
82 COG1311 HYS2 Archaeal DNA poly 31.1 1.1E+02 0.0023 32.6 5.9 71 7-78 289-365 (481)
83 COG2908 Uncharacterized protei 29.4 1.1E+02 0.0025 29.5 5.4 61 13-77 36-113 (237)
84 KOG1752 Glutaredoxin and relat 28.0 37 0.0008 28.5 1.6 38 15-54 54-95 (104)
85 cd07390 MPP_AQ1575 Aquifex aeo 27.9 87 0.0019 27.6 4.2 47 25-75 67-113 (168)
86 PF09587 PGA_cap: Bacterial ca 27.0 1.3E+02 0.0029 28.2 5.4 63 20-82 68-141 (250)
87 cd07384 MPP_Cdc1_like Saccharo 27.0 39 0.00084 30.3 1.7 20 165-184 129-148 (171)
88 TIGR03767 P_acnes_RR metalloph 26.6 6.9E+02 0.015 26.8 11.0 25 160-184 369-394 (496)
89 TIGR02189 GlrX-like_plant Glut 26.3 36 0.00077 27.8 1.3 51 2-54 29-89 (99)
90 PF00462 Glutaredoxin: Glutare 25.0 15 0.00033 26.5 -1.1 13 25-37 47-59 (60)
91 cd08165 MPP_MPPE1 human MPPE1 24.8 45 0.00098 29.3 1.7 14 27-40 76-89 (156)
92 cd07391 MPP_PF1019 Pyrococcus 24.0 50 0.0011 29.2 1.9 17 24-40 72-88 (172)
93 PRK11340 phosphodiesterase Yae 23.2 44 0.00095 32.0 1.4 47 26-76 111-166 (271)
94 cd07386 MPP_DNA_pol_II_small_a 20.1 1.7E+02 0.0037 27.2 4.7 49 167-221 188-236 (243)
No 1
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=100.00 E-value=2.4e-99 Score=733.28 Aligned_cols=350 Identities=50% Similarity=0.813 Sum_probs=312.3
Q ss_pred CcccccCccccccccHHHHHcCCCCCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCccC
Q 018136 1 MESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYN 80 (360)
Q Consensus 1 l~~~~~P~ky~~lgdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~ 80 (360)
|+|||||+|||+||+|++||+|+.+|||||||||||||+++||+||+|||||||||||||.+|||+++|+|||||||||+
T Consensus 49 ~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAsnyL~eLpyGGwVApNIyYlG~agVv~~~gvRIggiSGI~k 128 (456)
T KOG2863|consen 49 LKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEASNYLQELPYGGWVAPNIYYLGYAGVVNFGGVRIGGISGIYK 128 (456)
T ss_pred cccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchHHHHHHHhcccCceeccceEEeeecceEEECCEEEeeccchhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCChhhhhhhhhhchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcH
Q 018136 81 ARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSE 160 (360)
Q Consensus 81 ~~~y~~~~~e~~p~~~~~~rs~yhvr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~ 160 (360)
+++|+++|||++||+.+++||+||||++||.+|+|+..+||||||||||+||..|||.++|||.||||++|++.+.+||+
T Consensus 129 ~~dy~kgh~E~ppyn~stiRsiYHvR~~dV~~Lkqlk~piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp 208 (456)
T KOG2863|consen 129 EHDYRKGHFEWPPYNNSTIRSIYHVRISDVAKLKQLKHPIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSP 208 (456)
T ss_pred hhhcccCCCCCCCccchhhhhhhhhhhhhhHHHHhhcCcceEEeecCCCcchhhcCCHHHHHhcCcHHHHHHhcCCcCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEeeccCccccceeccCCCCCeeEEEEeccCCCCCCeeEEeeccCCC-CCceeeeCHHHHHHHHHhC
Q 018136 161 PAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCLPRRKFLQVFEIESGQ-GPYEIQYDEEWLAITRTFN 239 (360)
Q Consensus 161 ~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRFlaLdk~~~~rk~l~a~~i~~~~-~~~~l~yD~ewlai~~~~~ 239 (360)
++++|+..|||+||||||+||+|+|.+.|++..++|+|+||+||+|+|+|||+++++.++ +++.+.||.|||+|+|.|+
T Consensus 209 ~~~eLL~~LkP~yWfsAHLH~KFaA~v~H~~~~~~tkflaldKclp~~~flqile~~sdp~g~~~~eyd~ewlsi~~~tn 288 (456)
T KOG2863|consen 209 ALEELLEDLKPQYWFSAHLHVKFAALVQHNKRSHVTKFLALDKCLPNRNFLQILEIPSDPRGPMNVEYDNEWLSILRETN 288 (456)
T ss_pred HHHHHHHHhCcchhhhhhHhhHHhhhhcccCcCCCcccccccccCCCcchhhhccCCCCCCCCcccchhhhHHHhhhccc
Confidence 999999999999999999999999999999999999999999999999999999998876 7889999999999999999
Q ss_pred CCCCCCCCCCCCCCCC------CcchHHHHHHHHHhhhCCCCCCCceEecCCCCCCCCcccCCCCCCCCChhHHHHHHHc
Q 018136 240 SVFPLTSQSANFGGVQ------HDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFL 313 (360)
Q Consensus 240 ~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~p~~f~~tap~~~~~~~~~~~~~~~~~~npqt~~f~~~l 313 (360)
.++.+.....++|+.. ...++.+.|+...+......|+||.+|++.|++..+ ..|+..-.||||+.||+.|
T Consensus 289 ~l~~~k~~~~~~p~~~~~r~e~~~~ep~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~p---~~~~~~~~~P~~~~f~a~l 365 (456)
T KOG2863|consen 289 FLILVKCRYRNRPNRDLCRLEILEKEPDLSHVSWKDENHLMVPDNFSRTNFVYDPKEP---IVQNLHSNNPQTSVFSAEL 365 (456)
T ss_pred hhhhhhhhhhcCCcccchhhhccccCCccchhhhcchhhhcCCCccccceeeeccccc---cccccccCCCchhhHHHHH
Confidence 9999998888887632 345667788888887778899999999999998765 2557778899999999999
Q ss_pred C-CCcccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018136 314 E-LPNLFENALESREPTQSPATLDHKGPDLDPEEIPIDDED 353 (360)
Q Consensus 314 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 353 (360)
| |....-.-..+++..-.....+..-..++++||++|++.
T Consensus 366 ~rl~~~~~~~~~~~d~dlps~~~~e~~t~~~~~e~~~de~~ 406 (456)
T KOG2863|consen 366 SRLRAMHVLREIERDIDLPSYDSPEPYTLKIQKEEMVDEKA 406 (456)
T ss_pred hhhhhhhhhhhhhcCCCccccCCccccccccHHHHHhhhhh
Confidence 8 654433223332222222111111235677788777654
No 2
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=100.00 E-value=3.2e-62 Score=466.89 Aligned_cols=211 Identities=65% Similarity=1.194 Sum_probs=201.4
Q ss_pred CcccccCccccccccHHHHHcCCCCCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCccC
Q 018136 1 MESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYN 80 (360)
Q Consensus 1 l~~~~~P~ky~~lgdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~ 80 (360)
+++||||+||+.|++|++|++|++++|+|||||+||||++++|.++++|||||+||||||+++|++++|||||||||+++
T Consensus 47 ~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~~~~l~~l~~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~ 126 (262)
T cd00844 47 LKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEASNYLWELPYGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYK 126 (262)
T ss_pred hhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCCHHHHHhhcCCCeecCcEEEecCCCEEEECCeEEEEeccccc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCChhhhhhhhhhchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcH
Q 018136 81 ARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSE 160 (360)
Q Consensus 81 ~~~y~~~~~e~~p~~~~~~rs~yhvr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~ 160 (360)
..+|.+++++.+||++++++++||+|+.++.+|+.+.++||||||||||+||.++++.++|++.||+|+++++.+.+||+
T Consensus 127 ~~~~~~~~~~~~~~t~~~~rs~y~~r~~~~~kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~ 206 (262)
T cd00844 127 SHDYRKGHFERPPYSEDTKRSAYHVRNIEVFKLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSP 206 (262)
T ss_pred ccccccccccCCCCCHHHHHHhhhhhHHHHHHHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCH
Confidence 99998888889999999999999999999999988877999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEeeccCccccceeccC-----CCCCeeEEEEeccCCCCCCee
Q 018136 161 PAAQLLEKLKPSYWFSAHLHCKFAAVVQHG-----EDSPVTKFLALDKCLPRRKFL 211 (360)
Q Consensus 161 ~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~-----~~~~~TRFlaLdk~~~~rk~l 211 (360)
++++|++.||||||||||+|++|++.+.|. +..++|||||||||+|+|+||
T Consensus 207 ~~~~ll~~lkPryhf~gH~H~~f~~~~~~~~~~~~~~~~~TRFiaL~k~~~~~~~~ 262 (262)
T cd00844 207 AAEELLKHLKPRYWFSAHLHVKFAALVPHENKSPGNTNKETKFLALDKCLPGRDFL 262 (262)
T ss_pred HHHHHHHHhCCCEEEEecCCcccceecCCcccccCCCCcceEEEEcccccCCCCCC
Confidence 999999999999999999999999987764 246799999999999999996
No 3
>PF05011 DBR1: Lariat debranching enzyme, C-terminal domain; InterPro: IPR007708 This presumed domain is found at the C terminus of lariat debranching enzyme. This domain is always found in association with a metallo-phosphoesterase domain IPR004843 from INTERPRO. RNA lariat debranching enzyme is capable of digesting a variety of branched nucleic acid substrates and multicopy single-stranded DNAs. The enzyme degrades intron lariat structures during splicing. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0006397 mRNA processing
Probab=100.00 E-value=1.5e-37 Score=273.41 Aligned_cols=133 Identities=38% Similarity=0.618 Sum_probs=113.2
Q ss_pred eccCCCCCeeEEEEeccCCCCCCeeEEeeccCCCCC--ceeeeCHHHHHHHHHhCCCCCCCCCCCCCCCC-------CCc
Q 018136 187 VQHGEDSPVTKFLALDKCLPRRKFLQVFEIESGQGP--YEIQYDEEWLAITRTFNSVFPLTSQSANFGGV-------QHD 257 (360)
Q Consensus 187 ~~~~~~~~~TRFlaLdk~~~~rk~l~a~~i~~~~~~--~~l~yD~ewlai~~~~~~~~~~~~~~~~~~~~-------~~~ 257 (360)
|.|+.+++.|||||||||+|+|+|||+++|+..... ++|+||+|||||+|+++++++++.....++.. ...
T Consensus 1 vph~~~~~~TkFLALDKClP~R~FLqviei~~~~~~~~~~L~yD~EWLAI~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (145)
T PF05011_consen 1 VPHEITNKTTKFLALDKCLPRRDFLQVIEIPPDSSSPSPELYYDPEWLAILRATHHLLSLSSDPEYMPPPDEGRWDYRPL 80 (145)
T ss_pred CCCCcCCCccEEEeccccCCCCcceEEEEecCCCCCCCceEEECHHHHHHHHHhhhccccccccccCCCccccccchhhh
Confidence 456667889999999999999999999999887554 89999999999999999999986665554432 345
Q ss_pred chHHHHHHHHHhh--hCCCCCCCceEecCCCCCCCCc-ccCCCCCCCCChhHHHHHHHcCCCccc
Q 018136 258 MNDCRQWVRSRLQ--ERGAKPFEFVRTVPCYDASQSL-SIGAFAENPQNPQTESFLQFLELPNLF 319 (360)
Q Consensus 258 ~~~~~~~v~~~~~--~~~~~p~~f~~tap~~~~~~~~-~~~~~~~~~~npqt~~f~~~l~i~~~~ 319 (360)
++++++||++++. ++..+|.||++|||+|+++... ....+|.+|+||||++||+||||+|+|
T Consensus 81 i~ee~~~V~e~i~~~~~l~IP~nF~~tap~~~~~~~~~~~~~~~~~~~NPQT~~fc~~Lgi~n~~ 145 (145)
T PF05011_consen 81 IEEELEWVEENIVKKGDLKIPQNFVQTAPPYDPNNPQNRVNEQPKEYPNPQTTEFCELLGIPNPF 145 (145)
T ss_pred HHHHHHHHHHHhccCCCceeCcceEECCCCcCcCccccccccCCCCccChHHHHHHHHhCCCCCC
Confidence 7899999999994 4456799999999999998644 335689999999999999999999986
No 4
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.2e-33 Score=280.15 Aligned_cols=184 Identities=27% Similarity=0.444 Sum_probs=146.3
Q ss_pred ccccHHHHHcCCCCCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCCcEEEE-CCeEEEEEcCccCCccccCCCCC
Q 018136 12 EMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKF-GNIRIGGLSGIYNARHYRLGHYE 90 (360)
Q Consensus 12 ~lgdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~Gvv~~-~GLRIagLSGi~~~~~y~~~~~e 90 (360)
+..+|.+|.+|.+++||||||.|+|.-......+-.+|++||+||+|||+.|+++. .||+||||||.++...+..
T Consensus 50 ~~~e~~~ykng~~~vPiptY~~g~~~~~~~ky~~n~~g~Ei~~Nlt~Lg~~G~~~l~sGl~IaYLsG~e~~~~~~~---- 125 (528)
T KOG2476|consen 50 QNAEVEKYKNGTKKVPIPTYFLGDNANETEKYFENSDGKEIAENLTYLGRKGTYKLASGLTIAYLSGPESSEKGES---- 125 (528)
T ss_pred chhHHHHHhcCCccCceeEEEecCCCCccceecccCCCcccccceeeecccceEeecCCcEEEEeecccccccccc----
Confidence 56789999999999999999999998444333443489999999999999999976 6999999999988654311
Q ss_pred CCCCChhhhhhhhhhchHHHHHHhcccCCccEEEeCCCCCCcccc-CchhhHhhhcchhhhhccCCCCCcHHHHHHHHHh
Q 018136 91 RPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDY-GNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKL 169 (360)
Q Consensus 91 ~~p~~~~~~rs~yhvr~~dv~kL~~~~~~VDILLSHdWP~gI~~~-g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~L 169 (360)
-|++.++.++.| ..++. ....+||||||++||.+|... +.. .+.....||.++++|+..|
T Consensus 126 --~fs~~dv~~l~~--~~~~~---~~~~gvDILlTseWP~~v~e~~ss~------------~~~~~~~gs~lvs~La~~l 186 (528)
T KOG2476|consen 126 --KFSQADVDELRH--RLDTQ---KEFKGVDILLTSEWPADVQERNSSL------------PESKRLCGSELVSELAAEL 186 (528)
T ss_pred --ccCHHHHHHHhc--ccccc---cccCCccEEEecCCcchhhhccccC------------ccccCCcchHHHHHHHHhc
Confidence 255555555543 11211 235689999999999999874 221 1345678999999999999
Q ss_pred CCCEEEeecc--Cccccceecc----CCCCCeeEEEEeccCC--CCCCeeEEeeccC
Q 018136 170 KPSYWFSAHL--HCKFAAVVQH----GEDSPVTKFLALDKCL--PRRKFLQVFEIES 218 (360)
Q Consensus 170 kPRYhFsgHl--H~~f~a~~~~----~~~~~~TRFlaLdk~~--~~rk~l~a~~i~~ 218 (360)
||||||+|.. |++++||.+| .+.+++||||+|++++ .|+||+|||++.+
T Consensus 187 kPRYHFa~~~~v~YErePyrn~~~~~~~~~h~TRFI~LA~vGN~ek~K~lYAfs~~P 243 (528)
T KOG2476|consen 187 KPRYHFAGSDGVFYEREPYRNHAALNEEAGHVTRFIALAKVGNPEKQKWLYAFSLKP 243 (528)
T ss_pred CcceEeccCCCceeecccccchhhhcccccceeeeeehhhcCCccccceeeeecccc
Confidence 9999999985 7888889887 5678999999999999 5679999999743
No 5
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=99.93 E-value=1.5e-26 Score=204.69 Aligned_cols=101 Identities=32% Similarity=0.545 Sum_probs=85.4
Q ss_pred ccHHHHHcCCCCCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCCCCCC
Q 018136 14 KSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPP 93 (360)
Q Consensus 14 gdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~e~~p 93 (360)
+||++|++|++++|+||||+||||+
T Consensus 44 ~~~~~y~~g~~~~pipTyf~ggn~~------------------------------------------------------- 68 (150)
T cd07380 44 EELEAYKDGSKKVPIPTYFLGGNNP------------------------------------------------------- 68 (150)
T ss_pred hhHHHHhcCCccCCCCEEEECCCCC-------------------------------------------------------
Confidence 7999999999999999999999997
Q ss_pred CChhhhhhhhhhchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCE
Q 018136 94 YNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSY 173 (360)
Q Consensus 94 ~~~~~~rs~yhvr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRY 173 (360)
++||||||+||+||.++++... +......||+.+++|++++||||
T Consensus 69 -------------------------~~DILlTh~wP~gi~~~~~~~~----------~~~~~~~GS~~i~~l~~~lkPrY 113 (150)
T cd07380 69 -------------------------GVDILLTSEWPKGISKLSKVPF----------EETLLICGSDLIAELAKKLKPRY 113 (150)
T ss_pred -------------------------CCCEEECCCCchhhhhhCCCcc----------cccccCCCCHHHHHHHHHcCCCe
Confidence 4899999999999987765420 23456789999999999999999
Q ss_pred EEeeccCcccc--ceeccC----CCCCeeEEEEeccC
Q 018136 174 WFSAHLHCKFA--AVVQHG----EDSPVTKFLALDKC 204 (360)
Q Consensus 174 hFsgHlH~~f~--a~~~~~----~~~~~TRFlaLdk~ 204 (360)
|||||.|++|+ ||.|+. +..++||||+|+++
T Consensus 114 hf~gh~~~fyer~Pf~~~~~~~~~~~~~TRFi~La~~ 150 (150)
T cd07380 114 HFAGLEGVFYEREPYRNDSVLEEKAEHVTRFIGLAPV 150 (150)
T ss_pred EeecCCCceEeecCccCCCccccccCcceeEEeccCC
Confidence 99999876655 567764 23689999999974
No 6
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.32 E-value=4e-11 Score=105.99 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=88.5
Q ss_pred CCCCCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCCCCCCCChhhhhh
Q 018136 22 GQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIRS 101 (360)
Q Consensus 22 G~~kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~e~~p~~~~~~rs 101 (360)
..+..++|+|+|.|||+....... ..+++..+.. .++.++|++|+|++|..... +.. ...++++++..
T Consensus 47 ~l~~~~~p~~~v~GNHD~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~----~~~~~~~~l~~ 114 (188)
T cd07392 47 LLLAIGVPVLAVPGNCDTPEILGL------LTSAGLNLHG-KVVEVGGYTFVGIGGSNPTP-FNT----PIELSEEEIVS 114 (188)
T ss_pred HHHhcCCCEEEEcCCCCCHHHHHh------hhcCcEecCC-CEEEECCEEEEEeCCCCCCC-CCC----ccccCHHHHHH
Confidence 334678999999999997654333 2234444443 56678999999999864321 100 11233333322
Q ss_pred hhhhchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCc
Q 018136 102 VYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHC 181 (360)
Q Consensus 102 ~yhvr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~ 181 (360)
+ ..+.....+.+|++||.||.+... +.. ......|+..+.++++..+|++||+||.|.
T Consensus 115 ~--------~~l~~~~~~~~ilv~H~pp~~~~~--d~~------------~~~~~~g~~~l~~li~~~~~~~~l~GH~H~ 172 (188)
T cd07392 115 D--------GRLNNLLAKNLILVTHAPPYGTAV--DRV------------SGGFHVGSKAIRKFIEERQPLLCICGHIHE 172 (188)
T ss_pred h--------hhhhccCCCCeEEEECCCCcCCcc--ccc------------CCCCccCCHHHHHHHHHhCCcEEEEecccc
Confidence 1 123333457899999999987411 100 011236999999999999999999999998
Q ss_pred cccceeccCCCCCeeEEEEe
Q 018136 182 KFAAVVQHGEDSPVTKFLAL 201 (360)
Q Consensus 182 ~f~a~~~~~~~~~~TRFlaL 201 (360)
.+... .. ..|.+++-
T Consensus 173 ~~~~~-~~----~~~~~~n~ 187 (188)
T cd07392 173 SRGVD-KI----GNTLVVNP 187 (188)
T ss_pred cccee-ee----CCeEEecC
Confidence 87532 11 23666653
No 7
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.25 E-value=7.5e-11 Score=110.99 Aligned_cols=146 Identities=19% Similarity=0.220 Sum_probs=93.9
Q ss_pred CCCccEEEEcCCCCCc--hhHHHHhcCCcccCcEEEeCCCcEEEECC-eEEEEEcCccCCccccCCCCCCCCCChhhhhh
Q 018136 25 VAPIPTIFIGGNHEAS--NYLWELYYGGWAAPNIYFLGFAGVVKFGN-IRIGGLSGIYNARHYRLGHYERPPYNESTIRS 101 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s--~~l~el~~GG~vapNIyyLG~~Gvv~~~G-LRIagLSGi~~~~~y~~~~~e~~p~~~~~~rs 101 (360)
..++|+++|.|||+.. ..+.+....+++.|++..|.. +++++.| +||+|+||..... ..++++++..
T Consensus 60 ~l~~pv~~V~GNhD~~v~~~l~~~~~~~~~~p~~~~lh~-~~~~~~g~~~~~GlGGs~~~~---------~e~sE~e~~~ 129 (224)
T cd07388 60 EAHLPTFYVPGPQDAPLWEYLREAYNAELVHPEIRNVHE-TFAFWRGPYLVAGVGGEIADE---------GEPEEHEALR 129 (224)
T ss_pred hcCCceEEEcCCCChHHHHHHHHHhcccccCccceecCC-CeEEecCCeEEEEecCCcCCC---------CCcCHHHHhh
Confidence 5578999999999975 223322222455566666666 5677855 9999999986421 1134443110
Q ss_pred hhh-hchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccC
Q 018136 102 VYH-VREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLH 180 (360)
Q Consensus 102 ~yh-vr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH 180 (360)
... +.+.-+..+.....+.||||||..|.|.-. ...||..+++++++.+|+++++||.|
T Consensus 130 ~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~--------------------~h~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 130 YPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGL--------------------NEQGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred hhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCC--------------------CccCHHHHHHHHHHhCCCEEEEcCCc
Confidence 000 001112233333457999999999999710 25799999999999999999999998
Q ss_pred ccccceeccCCCCCeeEEEEeccCCCC
Q 018136 181 CKFAAVVQHGEDSPVTKFLALDKCLPR 207 (360)
Q Consensus 181 ~~f~a~~~~~~~~~~TRFlaLdk~~~~ 207 (360)
...+. -..|..++-+....+
T Consensus 190 ~~~~~-------~g~t~vvNpg~~~~g 209 (224)
T cd07388 190 QKHEL-------LGASWVVVPGDLSEG 209 (224)
T ss_pred eeEEE-------eCCEEEECCCcccCC
Confidence 44431 235888877764444
No 8
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=98.67 E-value=8.8e-08 Score=92.19 Aligned_cols=133 Identities=22% Similarity=0.322 Sum_probs=91.9
Q ss_pred ccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCCCCCCCChhhhhhhhhhchHHHHHHhcccCCccEEEeCCCCCC
Q 018136 52 AAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCG 131 (360)
Q Consensus 52 vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~e~~p~~~~~~rs~yhvr~~dv~kL~~~~~~VDILLSHdWP~g 131 (360)
+--|.+||...+ +++.|+||-|.+ |.+. +-.++|+.. .++...++..++...+|||+||-.|.|
T Consensus 162 lLTN~iYLqD~~-vtv~G~~Iygsp--w~p~------~~g~~f~l~-------rg~~~ld~W~~ip~~iDvL~tHtPPlG 225 (305)
T KOG3947|consen 162 LLTNCIYLQDSE-VTVRGVRIYGSP--WTPL------LPGWAFNLP-------RGQSLLDKWNQIPGGIDVLITHTPPLG 225 (305)
T ss_pred hhceeEEEecCc-EEEEEEEEecCC--CCcc------cCchhhhhh-------hhHhhhHHHhcCccccceeccCCCCCC
Confidence 456889999988 477889998764 2221 012233221 245567788889999999999999999
Q ss_pred ccccCchhhHhhhcchhhhhccCCCCCc-HHHHHHHHHhCCCEEEeeccCccccceeccCCCCCeeEEEEeccCC----C
Q 018136 132 ITDYGNCKELVRHKQYFEKEIQDGTLGS-EPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCL----P 206 (360)
Q Consensus 132 I~~~g~~~~Ll~~kp~f~~~~~~~~lGS-~~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRFlaLdk~~----~ 206 (360)
+|+.-. - .+....|+ +.+..|.+++||+||..||.|..+.... +..|+|++-.-|. +
T Consensus 226 ---~gd~~~------~----~~gqr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvta-----~G~t~fina~~C~~~~~~ 287 (305)
T KOG3947|consen 226 ---HGDLVP------V----FSGQRNGCVELLNTVERRVQPKYHVFGHVHEGHGVTA-----DGYTTFINAELCNINLRP 287 (305)
T ss_pred ---cchhcc------c----ccCcccCHHHHHHhHhhccccceEEeeeeecCceeee-----cCccccccHHHhhhcccc
Confidence 465421 0 12346888 6788888889999999999999877664 2369999877786 2
Q ss_pred CCCeeEEeeccCC
Q 018136 207 RRKFLQVFEIESG 219 (360)
Q Consensus 207 ~rk~l~a~~i~~~ 219 (360)
..+=+ +|+|+..
T Consensus 288 t~~pi-lfdip~~ 299 (305)
T KOG3947|consen 288 TNKPI-LFDIPKP 299 (305)
T ss_pred CCCCe-EEeCCCC
Confidence 22323 6777643
No 9
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.53 E-value=9.4e-07 Score=83.50 Aligned_cols=130 Identities=18% Similarity=0.256 Sum_probs=80.4
Q ss_pred CCCccEEEEcCCCCCc--hhHHHHhcCCcccCcEEEeCCCcEEEECC-eEEEEEcCccCCccccCCCCCCCCCChhhhhh
Q 018136 25 VAPIPTIFIGGNHEAS--NYLWELYYGGWAAPNIYFLGFAGVVKFGN-IRIGGLSGIYNARHYRLGHYERPPYNESTIRS 101 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s--~~l~el~~GG~vapNIyyLG~~Gvv~~~G-LRIagLSGi~~~~~y~~~~~e~~p~~~~~~rs 101 (360)
.+++||++|+|||++. .++.+++..--+.||++-+.+ ++..+.| +-|+|+||......... ...+-|-..+ .
T Consensus 87 ~~~~p~~~vPG~~Dap~~~~lr~a~~~e~v~p~~~~vH~-sf~~~~g~y~v~G~GGeI~~~~~~~--~~~LrYP~we--a 161 (255)
T PF14582_consen 87 ELGVPVFVVPGNMDAPERFFLREAYNAEIVTPHIHNVHE-SFFFWKGEYLVAGMGGEITDDQREE--EFKLRYPAWE--A 161 (255)
T ss_dssp CC-SEEEEE--TTS-SHHHHHHHHHHCCCC-TTEEE-CT-CEEEETTTEEEEEE-SEEESSS-BC--SSS-EEEHHH--H
T ss_pred hcCCcEEEecCCCCchHHHHHHHHhccceeccceeeeee-eecccCCcEEEEecCccccCCCccc--cccccchHHH--H
Confidence 7899999999999995 556677666778999998887 5777887 99999999876543222 1222121111 1
Q ss_pred hhhhchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCc
Q 018136 102 VYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHC 181 (360)
Q Consensus 102 ~yhvr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~ 181 (360)
.|+ ++.|.-++..-=|||.|..|. .+. .....||..+++|++..+|+-.++||.|.
T Consensus 162 ey~-----lk~l~elk~~r~IlLfhtpPd----~~k---------------g~~h~GS~~V~dlIk~~~P~ivl~Ghihe 217 (255)
T PF14582_consen 162 EYS-----LKFLRELKDYRKILLFHTPPD----LHK---------------GLIHVGSAAVRDLIKTYNPDIVLCGHIHE 217 (255)
T ss_dssp HHH-----HGGGGGCTSSEEEEEESS-BT----BCT---------------CTBTTSBHHHHHHHHHH--SEEEE-SSS-
T ss_pred HHH-----HHHHHhcccccEEEEEecCCc----cCC---------------CcccccHHHHHHHHHhcCCcEEEeccccc
Confidence 122 222223344567999999992 111 12468999999999999999999999987
Q ss_pred cc
Q 018136 182 KF 183 (360)
Q Consensus 182 ~f 183 (360)
..
T Consensus 218 ~~ 219 (255)
T PF14582_consen 218 SH 219 (255)
T ss_dssp EE
T ss_pred ch
Confidence 76
No 10
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.27 E-value=1.1e-05 Score=76.12 Aligned_cols=141 Identities=21% Similarity=0.318 Sum_probs=89.9
Q ss_pred CCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCCCCCCCChhhhhhhhh
Q 018136 25 VAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIRSVYH 104 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~e~~p~~~~~~rs~yh 104 (360)
.--+|++++.||-+.......+... .-|++ | .+++++|..+.|++|+-... +.. ...|+++++.+.
T Consensus 62 ~~~~~v~avpGNcD~~~v~~~l~~~---~~~v~--~--~v~~i~~~~~~G~Ggsn~tp-~nt----~~e~~E~~I~s~-- 127 (226)
T COG2129 62 ELGIPVLAVPGNCDPPEVIDVLKNA---GVNVH--G--RVVEIGGYGFVGFGGSNPTP-FNT----PREFSEDEIYSK-- 127 (226)
T ss_pred hcCCeEEEEcCCCChHHHHHHHHhc---ccccc--c--ceEEecCcEEEEecccCCCC-CCC----ccccCHHHHHHH--
Confidence 4568999999997766555554332 23444 2 67899999999999884311 111 123455555442
Q ss_pred hchHHHHHHh-cccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCccc
Q 018136 105 VREYDVHKLM-QIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKF 183 (360)
Q Consensus 105 vr~~dv~kL~-~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f 183 (360)
+.++. .....+-||+||..|.|-..- .. ....+.||..+++++.+++|+-+.|||.|...
T Consensus 128 -----l~~~v~~~~~~~~Il~~HaPP~gt~~d--~~------------~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~ 188 (226)
T COG2129 128 -----LKSLVKKADNPVNILLTHAPPYGTLLD--TP------------SGYVHVGSKAVRKLIEEFQPLLGLHGHIHESR 188 (226)
T ss_pred -----HHHHHhcccCcceEEEecCCCCCcccc--CC------------CCccccchHHHHHHHHHhCCceEEEeeecccc
Confidence 12221 111122299999999996321 10 01248999999999999999999999999732
Q ss_pred cceeccCCCCCeeEEEEecc
Q 018136 184 AAVVQHGEDSPVTKFLALDK 203 (360)
Q Consensus 184 ~a~~~~~~~~~~TRFlaLdk 203 (360)
.- +.-..|.|++=+.
T Consensus 189 G~-----d~iG~TivVNPG~ 203 (226)
T COG2129 189 GI-----DKIGNTIVVNPGP 203 (226)
T ss_pred cc-----cccCCeEEECCCC
Confidence 21 1123588888777
No 11
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.24 E-value=6.2e-06 Score=78.58 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=85.4
Q ss_pred CCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCC----cEEEECC--eEEEEEcCccCCccccCCCCCCCCCChhh
Q 018136 25 VAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFA----GVVKFGN--IRIGGLSGIYNARHYRLGHYERPPYNEST 98 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~----Gvv~~~G--LRIagLSGi~~~~~y~~~~~e~~p~~~~~ 98 (360)
+.+.|+|+|.||||............++.+.|..||.. +.+.+.. +-|.|-=|-..+..+. ++...
T Consensus 48 ~l~~p~~~V~GNHD~~~~~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~--------~~~~~ 119 (238)
T cd07397 48 SLPLPKAVILGNHDAWYDATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFW--------LSKKA 119 (238)
T ss_pred hCCCCeEEEcCCCcccccccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccc--------cCHHH
Confidence 45789999999999632110000011222333333321 2234443 4444443332222111 13345
Q ss_pred hhhhhhhchHH------HHHHhc-ccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhC-
Q 018136 99 IRSVYHVREYD------VHKLMQ-IEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLK- 170 (360)
Q Consensus 99 ~rs~yhvr~~d------v~kL~~-~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~Lk- 170 (360)
+|.+|.+..++ ++++.. .....+|||||.-|.|.-...+. .=.|.. . ......|.+-+.+.+..++
T Consensus 120 vr~~fgi~s~~eA~~~ive~~~~~~~~~~~VliaH~~~~G~g~~~~~---~cg~d~-~--~~~~~~G~~~l~~ai~~~~~ 193 (238)
T cd07397 120 VKAVYGVISLEESAQRIIAAAKKAPPDLPLILLAHNGPSGLGSDAED---PCGRDW-K--PPGGDWGDPDLALAISQIQQ 193 (238)
T ss_pred HHHHhCCCCHHHHHHHHHHHhhhcCCCCCeEEEeCcCCcCCCccccc---cccccc-C--CcCCCCCCHHHHHHHHHHhc
Confidence 66666443332 222211 12457999999999998321110 000000 0 0135689998888888877
Q ss_pred ---CCEEEeeccCcc--cccee---ccCCCCCeeEEEEeccC
Q 018136 171 ---PSYWFSAHLHCK--FAAVV---QHGEDSPVTKFLALDKC 204 (360)
Q Consensus 171 ---PRYhFsgHlH~~--f~a~~---~~~~~~~~TRFlaLdk~ 204 (360)
|+||.+||+|.. +..-. .+ .....|-||+-+.+
T Consensus 194 ~~~~~l~~fGH~H~~l~~~~~~r~~~~-~~~~gt~y~N~a~~ 234 (238)
T cd07397 194 GRQVPLVVFGHMHHRLRRGKGLRNMIA-VDREGTVYLNAASV 234 (238)
T ss_pred cCCCCEEEeCCccCcccccccccceee-ecCCCeEEEecccc
Confidence 999999999977 33310 00 11245999987654
No 12
>PHA03008 hypothetical protein; Provisional
Probab=98.04 E-value=1.5e-05 Score=73.54 Aligned_cols=97 Identities=21% Similarity=0.209 Sum_probs=60.8
Q ss_pred CcEEEeCCCcEEE-E--CCeEEEEEcCccCCccccCC----CCCCCCCChhhhhhhhhhchHHHHHHhcccCCccEEEeC
Q 018136 54 PNIYFLGFAGVVK-F--GNIRIGGLSGIYNARHYRLG----HYERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSH 126 (360)
Q Consensus 54 pNIyyLG~~Gvv~-~--~GLRIagLSGi~~~~~y~~~----~~e~~p~~~~~~rs~yhvr~~dv~kL~~~~~~VDILLSH 126 (360)
-|++||-.++|.- + .|+||-|-+-+-. ..|... ..+.+.|..+.-. .......+. .+|||+||
T Consensus 99 gnIIYLeDs~VtI~f~~rgIKIYGSP~sP~-~~F~~sai~k~~~~wAf~~~~d~--------~i~wwn~IP-~tDILITH 168 (234)
T PHA03008 99 LDIIILRDDLIEFDFFDDIIKIYGQSHIED-KKFKNSHIHKALEGIAHIKKNDD--------EINYRNHIP-KCDILITA 168 (234)
T ss_pred CCEEEEeCCcEEEEecCCceEEECCCCCcc-hhcccccccccccccccccCccc--------cchhhccCC-CCCEEEeC
Confidence 4899999988742 1 7899887653211 001000 0123444332111 111123344 49999999
Q ss_pred CCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccC
Q 018136 127 DWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLH 180 (360)
Q Consensus 127 dWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH 180 (360)
..|.|+.+. .+|++.+.+-+.++|||||.+||+-
T Consensus 169 gPP~GhLD~--------------------~vGC~~Ll~~I~rVKPKyHVFGh~~ 202 (234)
T PHA03008 169 SPPFAILDD--------------------DLACGDLFSKVIKIKPKFHIFNGLT 202 (234)
T ss_pred CCCcccccc--------------------ccCcHHHHHHHHHhCCcEEEeCCcc
Confidence 999998321 4799888888889999999999973
No 13
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=97.95 E-value=0.0001 Score=68.09 Aligned_cols=131 Identities=16% Similarity=0.183 Sum_probs=73.7
Q ss_pred CCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCCCCCCCChhhhhhhhh
Q 018136 25 VAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIRSVYH 104 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~e~~p~~~~~~rs~yh 104 (360)
+..+|+++|.|||+....+.... +.+-..+- ...-.+.++|+|+.+|........ ....+...++-+
T Consensus 68 ~~~~p~~~v~GNHD~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~i~lds~~~~~~-------~~~~~~~ql~wL-- 134 (240)
T cd07402 68 ALPIPVYLLPGNHDDRAAMRAVF-PELPPAPG---FVQYVVDLGGWRLILLDSSVPGQH-------GGELCAAQLDWL-- 134 (240)
T ss_pred hcCCCEEEeCCCCCCHHHHHHhh-cccccccc---ccceeEecCCEEEEEEeCCCCCCc-------CCEECHHHHHHH--
Confidence 45789999999999765443322 11100000 012245678999999976543211 001122222111
Q ss_pred hchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHh-CCCEEEeeccCccc
Q 018136 105 VREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKL-KPSYWFSAHLHCKF 183 (360)
Q Consensus 105 vr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~L-kPRYhFsgHlH~~f 183 (360)
-+.|.+.....-|+++|-.|....... .. .....++..+.+++... +++++|+||.|..+
T Consensus 135 -----~~~L~~~~~~~~il~~H~pp~~~~~~~-----------~~---~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~ 195 (240)
T cd07402 135 -----EAALAEAPDKPTLVFLHHPPFPVGIAW-----------MD---AIGLRNAEALAAVLARHPNVRAILCGHVHRPI 195 (240)
T ss_pred -----HHHHHhCCCCCEEEEECCCCccCCchh-----------hh---hhhCCCHHHHHHHHhcCCCeeEEEECCcCchH
Confidence 012223334567999999987753210 00 01223577888888888 89999999999865
Q ss_pred ccee
Q 018136 184 AAVV 187 (360)
Q Consensus 184 ~a~~ 187 (360)
...+
T Consensus 196 ~~~~ 199 (240)
T cd07402 196 DGSW 199 (240)
T ss_pred HeEE
Confidence 4443
No 14
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.92 E-value=5e-05 Score=71.19 Aligned_cols=152 Identities=21% Similarity=0.231 Sum_probs=82.1
Q ss_pred CCccEEEEcCCCCCc-h-hHHHHhcCCcccCcEEEeCCCcEE-EECCeEEEEEcCccCCccccCCC-------------C
Q 018136 26 APIPTIFIGGNHEAS-N-YLWELYYGGWAAPNIYFLGFAGVV-KFGNIRIGGLSGIYNARHYRLGH-------------Y 89 (360)
Q Consensus 26 aPvpTyFIgGNHE~s-~-~l~el~~GG~vapNIyyLG~~Gvv-~~~GLRIagLSGi~~~~~y~~~~-------------~ 89 (360)
..+|+|+|.||||.. . ...++.. .. ++.+|-...+. ..+++||.|+.|.+... +.+.. +
T Consensus 60 ~~~pv~~v~GNHD~~~~~~~~~~~~--~~--~~~~l~~~~~~~~~~~~~~ig~~gw~d~~-~~~~~~~~~~~~~~~d~~~ 134 (239)
T TIGR03729 60 KGIKVTFNAGNHDMLKDLTYEEIES--ND--SPLYLHNRFIDIPNTQWRIIGNNGWYDYS-FSNDKTSKEILRWKKSFWF 134 (239)
T ss_pred cCCcEEEECCCCCCCCCCCHHHHHh--cc--chhhhcccccccCCCceEEEeeccceecc-cccccCHHHHHHhhhcEEe
Confidence 458999999999953 1 1122211 01 44556554443 23889999999876532 00000 0
Q ss_pred C---CCCCChhhhhhhhhhchHHHHHH----hcccCCccEEEeCCCCCCccc-cCchhhHhhhcchhhhhccCCCCCcHH
Q 018136 90 E---RPPYNESTIRSVYHVREYDVHKL----MQIEEPIDIFLSHDWPCGITD-YGNCKELVRHKQYFEKEIQDGTLGSEP 161 (360)
Q Consensus 90 e---~~p~~~~~~rs~yhvr~~dv~kL----~~~~~~VDILLSHdWP~gI~~-~g~~~~Ll~~kp~f~~~~~~~~lGS~~ 161 (360)
. ..|..... + .+..+..| .+...+--|++||-.|..... .+.. .+.+ .......||..
T Consensus 135 ~~~~~~~~~~~~---~---~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~~~~~~------~~~~--~~~~~~~~s~~ 200 (239)
T TIGR03729 135 DRRIKRPMSDPE---R---TAIVLKQLKKQLNQLDNKQVIFVTHFVPHRDFIYVPMD------HRRF--DMFNAFLGSQH 200 (239)
T ss_pred ecccCCCCChHH---H---HHHHHHHHHHHHHhcCCCCEEEEEcccchHHHhcCCCC------Ccch--hhhhhccChHH
Confidence 0 01111111 1 12222222 223345689999998864211 0000 0011 01123578889
Q ss_pred HHHHHHHhCCCEEEeeccCccccceeccCCCCCeeEEEEe
Q 018136 162 AAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLAL 201 (360)
Q Consensus 162 i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRFlaL 201 (360)
+.+++++.+|+.|++||.|..+..... ..||+++-
T Consensus 201 l~~li~~~~v~~~i~GH~H~~~~~~~i-----~~~~~~~~ 235 (239)
T TIGR03729 201 FGQLLVKYEIKDVIFGHLHRRFGPLTI-----GGTTYHNR 235 (239)
T ss_pred HHHHHHHhCCCEEEECCccCCCCCEEE-----CCEEEEec
Confidence 999999999999999999988753211 24888753
No 15
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=97.55 E-value=0.0003 Score=60.11 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=51.7
Q ss_pred CCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCccccceeccCCCCCeeE
Q 018136 118 EPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTK 197 (360)
Q Consensus 118 ~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TR 197 (360)
.+++|++||.+|.++..+.. .....|+..+.+++...+|+|+++||+|..+.....+ .....|.
T Consensus 67 ~~~~ilv~H~~p~~~~~~~~---------------~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~-~~~~~t~ 130 (135)
T cd07379 67 EDTDILVTHGPPYGHLDLVS---------------SGQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAERVL-DTDGETL 130 (135)
T ss_pred CCCEEEEECCCCCcCccccc---------------cCcccCCHHHHHHHHHHCCcEEEEcCcCCcCceeEec-ccCCCEE
Confidence 36899999999998755432 1246799999999999999999999999998654213 2234688
Q ss_pred EEEe
Q 018136 198 FLAL 201 (360)
Q Consensus 198 FlaL 201 (360)
||+-
T Consensus 131 ~in~ 134 (135)
T cd07379 131 FVNA 134 (135)
T ss_pred EEeC
Confidence 8864
No 16
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=97.51 E-value=0.0017 Score=60.97 Aligned_cols=127 Identities=21% Similarity=0.251 Sum_probs=67.1
Q ss_pred CCCccEEEEcCCCCCc----hhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCcc-CCccccCCCCCCCCCChhhh
Q 018136 25 VAPIPTIFIGGNHEAS----NYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY-NARHYRLGHYERPPYNESTI 99 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s----~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~-~~~~y~~~~~e~~p~~~~~~ 99 (360)
..+.|+|+|.||||.. ..+.+. +.++.+++.....+.+++++|.|+.+-. ....+ .++++..+
T Consensus 69 ~l~~~v~~V~GNHD~~~~~~~~~~~~-----l~~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~-------~~~~~~~~ 136 (232)
T cd07393 69 ALPGTKVLLKGNHDYWWGSASKLRKA-----LEESRLALLFNNAYIDDDVAICGTRGWDNPGNPW-------PPINETLK 136 (232)
T ss_pred hCCCCeEEEeCCccccCCCHHHHHHH-----HHhcCeEEeccCcEEECCEEEEEEEeeCCCCCcc-------cccccccc
Confidence 3566899999999952 222221 1222233333455668999999986422 11110 00100000
Q ss_pred -hhhhhhchHHHHHH----hccc----CCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhC
Q 018136 100 -RSVYHVREYDVHKL----MQIE----EPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLK 170 (360)
Q Consensus 100 -rs~yhvr~~dv~kL----~~~~----~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~Lk 170 (360)
.+-.++.+.++..| .... .++-|+++|-.|.... .++..+.++++..+
T Consensus 137 ~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~-----------------------~~~~~~~~~~~~~~ 193 (232)
T cd07393 137 VEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANEN-----------------------GDDSPISKLIEEYG 193 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCC-----------------------CCHHHHHHHHHHcC
Confidence 00011111222222 1111 1357999998886541 13445677888889
Q ss_pred CCEEEeeccCccccce
Q 018136 171 PSYWFSAHLHCKFAAV 186 (360)
Q Consensus 171 PRYhFsgHlH~~f~a~ 186 (360)
..+.|+||.|......
T Consensus 194 v~~vl~GH~H~~~~~~ 209 (232)
T cd07393 194 VDICVYGHLHGVGRDR 209 (232)
T ss_pred CCEEEECCCCCCcccc
Confidence 9999999999775433
No 17
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=97.49 E-value=0.0002 Score=58.70 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=39.9
Q ss_pred cCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCcc
Q 018136 117 EEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCK 182 (360)
Q Consensus 117 ~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~ 182 (360)
.....|+++|..|.......... .....++..+..+++.-++.++|+||.|..
T Consensus 148 ~~~~~iv~~H~p~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 148 NDDPVIVFTHHPPYSSSSDSSSY-------------GNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EESEEEEEESSSSSTTSSSTHHH-------------SSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred cccceeEEEecCCCCcccccccc-------------chhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 35789999999999875433210 112346788999999999999999999963
No 18
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.45 E-value=0.00083 Score=59.08 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=36.3
Q ss_pred CccEEEeCCCCCCccccC-chhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCccccc
Q 018136 119 PIDIFLSHDWPCGITDYG-NCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAA 185 (360)
Q Consensus 119 ~VDILLSHdWP~gI~~~g-~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f~a 185 (360)
+-.|++||-.|....... +.. ...+..++..+.++++.-++++|++||.|..+..
T Consensus 97 ~~~vv~~HhpP~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQYGD------------SLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred CCEEEEeCCCCCccccCccccC------------CCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 567999999997653211 000 0011234555777778889999999999988644
No 19
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.89 E-value=0.003 Score=54.14 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=49.3
Q ss_pred CccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCccccceeccCCCCCeeEE
Q 018136 119 PIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKF 198 (360)
Q Consensus 119 ~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRF 198 (360)
.++|+++|.||.++.... .....|+..+.+++...+|+++++||.|..+..... ...-..|++
T Consensus 56 D~~Ilv~H~pp~~~~~~~----------------~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~~~-~~~~~~t~~ 118 (129)
T cd07403 56 DVDILLTHAPPAGIGDGE----------------DFAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQLR-IRRVGDTTV 118 (129)
T ss_pred ccCEEEECCCCCcCcCcc----------------cccccCHHHHHHHHHHHCCcEEEEcCcCCCcCcccc-ccccCCEEE
Confidence 389999999998774321 113468889999999999999999999988765510 011235899
Q ss_pred EEecc
Q 018136 199 LALDK 203 (360)
Q Consensus 199 laLdk 203 (360)
++.+-
T Consensus 119 ~n~~~ 123 (129)
T cd07403 119 INAYG 123 (129)
T ss_pred EeCCc
Confidence 87654
No 20
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=96.89 E-value=0.0024 Score=51.49 Aligned_cols=50 Identities=30% Similarity=0.247 Sum_probs=36.1
Q ss_pred EEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCccccce
Q 018136 122 IFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAV 186 (360)
Q Consensus 122 ILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f~a~ 186 (360)
|+++|.+|.......... ...++.....++...+|.++|+||.|....-.
T Consensus 70 i~~~H~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 70 ILLTHGPPYDPLDELSPD---------------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred EEEeccCCCCCchhhccc---------------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 888888887664433211 11257889999999999999999999776543
No 21
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.52 E-value=0.027 Score=53.94 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHh-CCCEEEeeccCccccc
Q 018136 158 GSEPAAQLLEKL-KPSYWFSAHLHCKFAA 185 (360)
Q Consensus 158 GS~~i~~Ll~~L-kPRYhFsgHlH~~f~a 185 (360)
.+..+.+++++- +.+.+|+||.|..+..
T Consensus 182 n~~~l~~ll~~~~~v~~vl~GH~H~~~~~ 210 (275)
T PRK11148 182 NAHELAEVLAKFPNVKAILCGHIHQELDL 210 (275)
T ss_pred CHHHHHHHHhcCCCceEEEecccChHHhc
Confidence 556788888876 7899999999987654
No 22
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.46 E-value=0.033 Score=53.23 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=18.8
Q ss_pred cHHHHHHHHHh-CCCEEEeeccCccc
Q 018136 159 SEPAAQLLEKL-KPSYWFSAHLHCKF 183 (360)
Q Consensus 159 S~~i~~Ll~~L-kPRYhFsgHlH~~f 183 (360)
...+.++++.- +.++||+||.|...
T Consensus 204 ~~~~~~ll~~~~~V~~v~~GH~H~~~ 229 (267)
T cd07396 204 HEEVLSILRAYGCVKACISGHDHEGG 229 (267)
T ss_pred HHHHHHHHHhCCCEEEEEcCCcCCCC
Confidence 35566777763 56899999999875
No 23
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.45 E-value=0.05 Score=52.31 Aligned_cols=67 Identities=18% Similarity=0.079 Sum_probs=39.4
Q ss_pred CccEEEeCCCCCCccccCchhhHhhhcchhhh---hccCCCCCcHHHHHHHHHhCCCEEEeeccCccccce
Q 018136 119 PIDIFLSHDWPCGITDYGNCKELVRHKQYFEK---EIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAV 186 (360)
Q Consensus 119 ~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~---~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f~a~ 186 (360)
..=|||||-...-...-... .+-..++.+.. ..-.+.+.......|++.+||+-.||||.|....-.
T Consensus 163 ~p~ILl~H~Plyr~~~~~cg-~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 163 KPRILLTHVPLYRPPNTSCG-PLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred CcEEEEeccccccCCCCCCC-CccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 34599999886544321111 01111111110 001225666788899999999999999988665543
No 24
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=96.10 E-value=0.033 Score=53.21 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=65.4
Q ss_pred CCccEEEEcCCCCCchhHHHHhc------------CCcccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCCCCCC
Q 018136 26 APIPTIFIGGNHEASNYLWELYY------------GGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPP 93 (360)
Q Consensus 26 aPvpTyFIgGNHE~s~~l~el~~------------GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~e~~p 93 (360)
..+|.+++.||||.......... +....+|.|| .+.+++++|.+|....... .+ .
T Consensus 67 ~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-----sf~~g~v~fi~Lds~~~~~---~~-----~ 133 (294)
T cd00839 67 SYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWY-----SFDVGPVHFVSLSTEVDFY---GD-----G 133 (294)
T ss_pred hcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceE-----EEeeCCEEEEEEecccccc---cC-----C
Confidence 36899999999997533211100 0011123332 3467899999997543211 00 0
Q ss_pred CChhhhhhhhhhchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCE
Q 018136 94 YNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSY 173 (360)
Q Consensus 94 ~~~~~~rs~yhvr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRY 173 (360)
.....++-+ +.++........+.-|+++|-.+.......+.. .........+..|+++.+...
T Consensus 134 ~~~~q~~WL----~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~-------------~~~~~~~~~l~~ll~~~~v~~ 196 (294)
T cd00839 134 PGSPQYDWL----EADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDC-------------IEGEKMRAALEDLFYKYGVDL 196 (294)
T ss_pred CCcHHHHHH----HHHHHHhcccCCCeEEEEeccCcEecCcccccc-------------chhHHHHHHHHHHHHHhCCCE
Confidence 111122211 112211111112456889997775432211100 001234456778888889999
Q ss_pred EEeeccCcc
Q 018136 174 WFSAHLHCK 182 (360)
Q Consensus 174 hFsgHlH~~ 182 (360)
+|+||.|..
T Consensus 197 vl~GH~H~y 205 (294)
T cd00839 197 VLSGHVHAY 205 (294)
T ss_pred EEEccceee
Confidence 999999954
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=95.95 E-value=0.025 Score=48.20 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=36.5
Q ss_pred EEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCccccce
Q 018136 122 IFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAV 186 (360)
Q Consensus 122 ILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f~a~ 186 (360)
|+++|-.|......... ...+...+..++++.+++++++||.|..+...
T Consensus 81 iv~~Hhp~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 81 IVVLHHPLVPPPGSGRE----------------RLLDAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred EEEecCCCCCCCccccc----------------cCCCHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 88999888876432111 11266778899999999999999999877554
No 26
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=95.75 E-value=0.01 Score=53.77 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=66.4
Q ss_pred cccHHHHHcCCCCCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeC---C-CcEE----EECCeEEEEEcCccCCccc
Q 018136 13 MKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLG---F-AGVV----KFGNIRIGGLSGIYNARHY 84 (360)
Q Consensus 13 lgdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG---~-~Gvv----~~~GLRIagLSGi~~~~~y 84 (360)
+..+.+++.....+.+|+|++.||||.......... .....++..++ . .... ...++.|.|++-.....
T Consensus 62 ~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~~-- 138 (223)
T cd00840 62 LELLIEALRRLKEAGIPVFIIAGNHDSPSRLGALSP-LLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRSR-- 138 (223)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccccccc-hHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHHH--
Confidence 344444444333358999999999997654332111 11123444432 1 1111 12457777776321110
Q ss_pred cCCCCCCCCCChhhhhhhhhhchHHHHHHh-cccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHH
Q 018136 85 RLGHYERPPYNESTIRSVYHVREYDVHKLM-QIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAA 163 (360)
Q Consensus 85 ~~~~~e~~p~~~~~~rs~yhvr~~dv~kL~-~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~ 163 (360)
..... +.....+. .....+-|+++|.-..+..... ....+...
T Consensus 139 -------------~~~~~----~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~~-------------------~~~~~~~~ 182 (223)
T cd00840 139 -------------LRDLL----ADAELRPRPLDPDDFNILLLHGGVAGAGPSD-------------------SERAPFVP 182 (223)
T ss_pred -------------HHHHH----HHHHHHhhccCCCCcEEEEEeeeeecCCCCc-------------------ccccccCc
Confidence 00000 00001111 2235678999998877653211 00123334
Q ss_pred HHHHHhCCCEEEeeccCcccc
Q 018136 164 QLLEKLKPSYWFSAHLHCKFA 184 (360)
Q Consensus 164 ~Ll~~LkPRYhFsgHlH~~f~ 184 (360)
..+...+..|+++||.|....
T Consensus 183 ~~~~~~~~d~v~~GH~H~~~~ 203 (223)
T cd00840 183 EALLPAGFDYVALGHIHRPQI 203 (223)
T ss_pred HhhcCcCCCEEECCCcccCee
Confidence 445567889999999997653
No 27
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=95.74 E-value=0.04 Score=50.24 Aligned_cols=59 Identities=20% Similarity=0.125 Sum_probs=31.8
Q ss_pred HHHHHcCCCCCCccEEEEcCCCCCchhHHHH-hcCCcccCcEEEeCCCcEE-EECCeEEEEEc
Q 018136 16 FWKYYSGQEVAPIPTIFIGGNHEASNYLWEL-YYGGWAAPNIYFLGFAGVV-KFGNIRIGGLS 76 (360)
Q Consensus 16 F~~Y~sG~~kaPvpTyFIgGNHE~s~~l~el-~~GG~vapNIyyLG~~Gvv-~~~GLRIagLS 76 (360)
+.++++. ...++|+|++.||||........ ..- --..|+.+|....+. ..+|.+|+-.|
T Consensus 53 ~~~~l~~-l~~~~~v~~v~GNHD~~~~~~~~~~~~-l~~~~v~~L~~~~~~~~~~~~~i~i~G 113 (223)
T cd07385 53 LLELLKK-LKAPLGVYAVLGNHDYYSGDEENWIEA-LESAGITVLRNESVEISVGGATIGIAG 113 (223)
T ss_pred HHHHHhc-cCCCCCEEEECCCcccccCchHHHHHH-HHHcCCEEeecCcEEeccCCeEEEEEe
Confidence 3344443 24678999999999975332211 000 002356667555443 45676665554
No 28
>PRK04036 DNA polymerase II small subunit; Validated
Probab=95.67 E-value=0.088 Score=55.40 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=44.6
Q ss_pred ccccccHHHHHcCCCCCCccEEEEcCCCCCchhHHH---Hh--cCCcc-cCcEEEeCCCcEEEECCeEEEEEcCcc
Q 018136 10 YREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWE---LY--YGGWA-APNIYFLGFAGVVKFGNIRIGGLSGIY 79 (360)
Q Consensus 10 y~~lgdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~e---l~--~GG~v-apNIyyLG~~Gvv~~~GLRIagLSGi~ 79 (360)
|.++..+.+++.... ..+++++|.|||+....... +. ....+ ..|+.+|..-..++++|.+|.+..|.-
T Consensus 314 ~~~~~~l~~~L~~L~-~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 314 YEQYEAAAEYLKQIP-EDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHNVTFVSNPALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHHHHHHHHHHHhhh-cCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCCeEEecCCeEEEECCEEEEEECCCC
Confidence 333444555555433 46899999999997643110 00 00012 258999988777889999999999864
No 29
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.57 E-value=0.13 Score=49.02 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=32.2
Q ss_pred CccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCcccc
Q 018136 119 PIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFA 184 (360)
Q Consensus 119 ~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f~ 184 (360)
+.-|+++|-.+....... ...+.. +.+++++.++...|+||.|....
T Consensus 166 ~~~IV~~HhP~~~~~~~~------------------~~~~~~-~~~ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 166 NYTIWFGHYPTSTIISPS------------------AKSSSK-FKDLLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred CeEEEEEcccchhccCCC------------------cchhHH-HHHHHHhcCCcEEEeCCccCCCc
Confidence 467999998774421110 112223 78888888999999999997654
No 30
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=95.21 E-value=0.17 Score=47.74 Aligned_cols=142 Identities=16% Similarity=0.063 Sum_probs=67.0
Q ss_pred cHHHHHcCCCCCCccEEEEcCCCCCchh-----HHHHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCC
Q 018136 15 SFWKYYSGQEVAPIPTIFIGGNHEASNY-----LWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHY 89 (360)
Q Consensus 15 dF~~Y~sG~~kaPvpTyFIgGNHE~s~~-----l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~ 89 (360)
.|.+.+.. ...++|+|+|.||||.... +... .. ...+. + -.+.++|+|+.+|....-... .
T Consensus 75 ~~~~~~~~-~~~~vp~~~i~GNHD~~~~~~~~~~~~f-~~-~~g~~-~-----y~~~~~~~~~i~lds~~~~~~---~-- 140 (262)
T cd07395 75 DLKDVLSL-LDPDIPLVCVCGNHDVGNTPTEESIKDY-RD-VFGDD-Y-----FSFWVGGVFFIVLNSQLFFDP---S-- 140 (262)
T ss_pred HHHHHHhh-ccCCCcEEEeCCCCCCCCCCChhHHHHH-HH-HhCCc-c-----eEEEECCEEEEEeccccccCc---c--
Confidence 34444442 2347899999999997411 1111 00 00111 1 134578999999865421110 0
Q ss_pred CCCCCChhhhhhhhhhchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHh
Q 018136 90 ERPPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKL 169 (360)
Q Consensus 90 e~~p~~~~~~rs~yhvr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~L 169 (360)
........++.-+ +..+++-.+.....-|+++|-+|-...... .. .+|. ........+..++++-
T Consensus 141 ~~~~~~~~ql~WL----~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~-~~------~~~~----~~~~~~~~l~~ll~~~ 205 (262)
T cd07395 141 EVPELAQAQDVWL----EEQLEIAKESDCKHVIVFQHIPWFLEDPDE-ED------SYFN----IPKSVRKPLLDKFKKA 205 (262)
T ss_pred ccccchHHHHHHH----HHHHHHHHhccCCcEEEEECcCCccCCCCC-Cc------ccCC----cCHHHHHHHHHHHHhc
Confidence 0001111222111 111111110123466999998885322110 00 0010 0011123566777778
Q ss_pred CCCEEEeeccCccccc
Q 018136 170 KPSYWFSAHLHCKFAA 185 (360)
Q Consensus 170 kPRYhFsgHlH~~f~a 185 (360)
+-..+|+||.|.....
T Consensus 206 ~V~~v~~GH~H~~~~~ 221 (262)
T cd07395 206 GVKAVFSGHYHRNAGG 221 (262)
T ss_pred CceEEEECccccCCce
Confidence 8899999999976543
No 31
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=95.09 E-value=0.12 Score=48.97 Aligned_cols=64 Identities=20% Similarity=0.143 Sum_probs=39.5
Q ss_pred CccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCccccceeccCCCCCeeEE
Q 018136 119 PIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKF 198 (360)
Q Consensus 119 ~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRF 198 (360)
+.=|+++|-.+......+.. ..-...+.+++++-+...+|+||.|....-.. ....|.+
T Consensus 167 ~~~iv~~H~P~~~~~~~~~~-----------------~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~----~~~~~~~ 225 (277)
T cd07378 167 DWKIVVGHHPIYSSGEHGPT-----------------SCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKD----DGSGTSF 225 (277)
T ss_pred CeEEEEeCccceeCCCCCCc-----------------HHHHHHHHHHHHHcCCCEEEeCCcccceeeec----CCCCcEE
Confidence 45599999887654322210 01134567788888899999999997542221 1135777
Q ss_pred EEecc
Q 018136 199 LALDK 203 (360)
Q Consensus 199 laLdk 203 (360)
+..+.
T Consensus 226 i~~G~ 230 (277)
T cd07378 226 VVSGA 230 (277)
T ss_pred EEeCC
Confidence 76653
No 32
>PLN02533 probable purple acid phosphatase
Probab=94.45 E-value=0.35 Score=49.83 Aligned_cols=125 Identities=18% Similarity=0.304 Sum_probs=66.0
Q ss_pred CCccEEEEcCCCCCchh----------H---HHHhcCC-cccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCCCC
Q 018136 26 APIPTIFIGGNHEASNY----------L---WELYYGG-WAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYER 91 (360)
Q Consensus 26 aPvpTyFIgGNHE~s~~----------l---~el~~GG-~vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~e~ 91 (360)
+.+|.+.+.||||.... + +..+..+ -...|.|| .+.++|+++..|+.-. ++..
T Consensus 197 s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~~yY-----Sfd~g~vhfI~Lds~~---~~~~----- 263 (427)
T PLN02533 197 SQRPWMVTHGNHELEKIPILHPEKFTAYNARWRMPFEESGSTSNLYY-----SFNVYGVHIIMLGSYT---DFEP----- 263 (427)
T ss_pred hcCceEEeCccccccccccccCcCccchhhcccCCccccCCCCCceE-----EEEECCEEEEEEeCCc---cccC-----
Confidence 45899999999997421 0 0111100 01234443 3577899999997532 1111
Q ss_pred CCCChhhhhhhhhhchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCC-cHHHHHHHHHhC
Q 018136 92 PPYNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLG-SEPAAQLLEKLK 170 (360)
Q Consensus 92 ~p~~~~~~rs~yhvr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lG-S~~i~~Ll~~Lk 170 (360)
.....+=+ +.|+.+......+.-|++.|-.+......... .....+ ...+..|+.+.+
T Consensus 264 ---~~~Q~~WL----e~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~--------------~~~~~~~r~~le~Ll~~~~ 322 (427)
T PLN02533 264 ---GSEQYQWL----ENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQG--------------EKESVGMKESMETLLYKAR 322 (427)
T ss_pred ---chHHHHHH----HHHHHhhcccCCCEEEEEeCCCeeecccccCC--------------cchhHHHHHHHHHHHHHhC
Confidence 01111111 22332211112356789999887654211000 000112 246788999999
Q ss_pred CCEEEeeccCccccc
Q 018136 171 PSYWFSAHLHCKFAA 185 (360)
Q Consensus 171 PRYhFsgHlH~~f~a 185 (360)
+..+|+||.|. |++
T Consensus 323 VdlvlsGH~H~-YeR 336 (427)
T PLN02533 323 VDLVFAGHVHA-YER 336 (427)
T ss_pred CcEEEecceec-ccc
Confidence 99999999995 443
No 33
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=94.20 E-value=0.88 Score=42.52 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCEEEeeccCccccceeccCCCCCeeEEEEeccCCCCCCee
Q 018136 160 EPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCLPRRKFL 211 (360)
Q Consensus 160 ~~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRFlaLdk~~~~rk~l 211 (360)
..+.++++..++.++++||.|...---.. .++..++.++|+.......+|
T Consensus 175 ~~~~~~~~~~~~~~~i~GHtH~~~~~~~~--~~~~~~~~~~lgdW~~~~~~~ 224 (231)
T TIGR01854 175 AEVAAVMRRYGVDRLIHGHTHRPAIHPLQ--ADGQPATRIVLGDWYRQGSIL 224 (231)
T ss_pred HHHHHHHHHcCCCEEEECCccCcceeecc--cCCCccEEEEECCCccCCeEE
Confidence 45677788889999999999966422221 122346889999887655554
No 34
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=94.05 E-value=0.56 Score=45.32 Aligned_cols=54 Identities=19% Similarity=0.094 Sum_probs=33.5
Q ss_pred CCCccEEEEcCCCCCch---hHHHHh---cCCcccCcEEEeCC----------CcEEEECCeEEEEEcCcc
Q 018136 25 VAPIPTIFIGGNHEASN---YLWELY---YGGWAAPNIYFLGF----------AGVVKFGNIRIGGLSGIY 79 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s~---~l~el~---~GG~vapNIyyLG~----------~Gvv~~~GLRIagLSGi~ 79 (360)
.+.+... +.||||-.. .|.+.. ..-++|-|++.-.. .-+++++|+|||.+|=..
T Consensus 80 ~~g~D~~-~lGNHefd~G~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~ 149 (281)
T cd07409 80 LLGYDAM-TLGNHEFDDGVEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTT 149 (281)
T ss_pred hcCCCEE-EeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEec
Confidence 4455544 447999752 233322 34478889876542 235578999999987443
No 35
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=93.98 E-value=0.57 Score=44.60 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=33.5
Q ss_pred EEEEcCCCCCc---hhHHHHh---cCCcccCcEEEeCC---------CcEEEECCeEEEEEcCcc
Q 018136 30 TIFIGGNHEAS---NYLWELY---YGGWAAPNIYFLGF---------AGVVKFGNIRIGGLSGIY 79 (360)
Q Consensus 30 TyFIgGNHE~s---~~l~el~---~GG~vapNIyyLG~---------~Gvv~~~GLRIagLSGi~ 79 (360)
.+.+.||||-. ..+.++. .--+++-||++-+. .-+++.+|+|||.+|=..
T Consensus 73 d~~~~GNHefd~g~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~ 137 (257)
T cd07406 73 DLACFGNHEFDFGEDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVE 137 (257)
T ss_pred cEEeecccccccCHHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEec
Confidence 47788999964 2343332 23488999987543 234578999999997543
No 36
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=93.89 E-value=0.38 Score=51.07 Aligned_cols=48 Identities=19% Similarity=0.076 Sum_probs=32.1
Q ss_pred EEEEcCCCCCc---hhHHHHh---cCCcccCcEEEeC---------CCcEEEECCeEEEEEcC
Q 018136 30 TIFIGGNHEAS---NYLWELY---YGGWAAPNIYFLG---------FAGVVKFGNIRIGGLSG 77 (360)
Q Consensus 30 TyFIgGNHE~s---~~l~el~---~GG~vapNIyyLG---------~~Gvv~~~GLRIagLSG 77 (360)
-+.+.||||-. ..|.++. .--|||-||++-+ ..-+++++|+|||.+|=
T Consensus 84 Da~~lGNHEFd~G~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl 146 (550)
T TIGR01530 84 DFFTLGNHEFDAGNEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGL 146 (550)
T ss_pred CEEEeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEe
Confidence 56788999964 2333332 3348999998532 23455789999998874
No 37
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=93.28 E-value=3.2 Score=38.92 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=35.7
Q ss_pred CcHHHHHHHHHhCCCEEEeeccCccccceeccCCCCCeeEEEEeccCCCCCCeeEE
Q 018136 158 GSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCLPRRKFLQV 213 (360)
Q Consensus 158 GS~~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRFlaLdk~~~~rk~l~a 213 (360)
....+.++++....++.++||.|..-..... ..+..-+.++|+....+..|+..
T Consensus 175 ~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~--~~~~~~~~~~lgdw~~~~~~~~~ 228 (241)
T PRK05340 175 NPEAVAALMEKHGVDTLIHGHTHRPAIHQLQ--AGGQPATRIVLGDWHEQGSVLKV 228 (241)
T ss_pred CHHHHHHHHHHhCCCEEEECcccCcceeecc--CCCcceEEEEeCCCCCCCeEEEE
Confidence 3456778888889999999999965321111 11112368999988766666543
No 38
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=93.11 E-value=0.92 Score=44.05 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=20.6
Q ss_pred cccCcEEEeC-------CCcEEEECCeEEEEEcCc
Q 018136 51 WAAPNIYFLG-------FAGVVKFGNIRIGGLSGI 78 (360)
Q Consensus 51 ~vapNIyyLG-------~~Gvv~~~GLRIagLSGi 78 (360)
++|-|+++-. ..-+++++|+|||.+|=.
T Consensus 121 ~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviGl~ 155 (288)
T cd07412 121 YLAANVYDKGTGTPALPPYTIKDVGGVKVGFIGAV 155 (288)
T ss_pred EEEEeEEecCCCCcccCCEEEEEECCEEEEEEeec
Confidence 7888998753 233457899999988754
No 39
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=92.88 E-value=0.61 Score=40.20 Aligned_cols=37 Identities=11% Similarity=-0.017 Sum_probs=27.2
Q ss_pred HHHHHHhCCCEEEeeccCccccceeccCCCCCeeEEEEeccCC
Q 018136 163 AQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCL 205 (360)
Q Consensus 163 ~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRFlaLdk~~ 205 (360)
..++......|+++||.|..+..... .+.+++=+.+.
T Consensus 95 ~~~~~~~~~d~vi~GHtH~~~~~~~~------~~~~inpGs~~ 131 (155)
T cd00841 95 LYLAKEGGADVVLYGHTHIPVIEKIG------GVLLLNPGSLS 131 (155)
T ss_pred hhhhhhcCCCEEEECcccCCccEEEC------CEEEEeCCCcc
Confidence 45566778899999999988765432 37788777665
No 40
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=91.15 E-value=1.7 Score=40.21 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHh-CCCEEEeeccCccccceec-cCCCCCeeEEEEeccC-C--CCCCeeEEeeccCCCCC
Q 018136 157 LGSEPAAQLLEKL-KPSYWFSAHLHCKFAAVVQ-HGEDSPVTKFLALDKC-L--PRRKFLQVFEIESGQGP 222 (360)
Q Consensus 157 lGS~~i~~Ll~~L-kPRYhFsgHlH~~f~a~~~-~~~~~~~TRFlaLdk~-~--~~rk~l~a~~i~~~~~~ 222 (360)
.|...+.+|+++- +-+..|+||.|........ .+..++.+.=+..+-. . .+.-|+.++.+......
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~ 205 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNK 205 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCCCceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCE
Confidence 4555677888776 5888999999987655431 1222333433333322 1 34568888888766443
No 41
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=90.54 E-value=1.6 Score=38.11 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCEEEeeccCccccceeccCCCCCeeEEEEeccCC
Q 018136 162 AAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCL 205 (360)
Q Consensus 162 i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRFlaLdk~~ 205 (360)
+..+.+.....+.++||.|..+..... .+.|++-+.+.
T Consensus 98 l~~~~~~~~~d~vi~GHtH~~~~~~~~------~~~~iNpGs~~ 135 (158)
T TIGR00040 98 LEYLAKELGVDVLIFGHTHIPVAEELR------GILLINPGSLT 135 (158)
T ss_pred HHHHHhccCCCEEEECCCCCCccEEEC------CEEEEECCccc
Confidence 445555567799999999987755432 36888777766
No 42
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=90.50 E-value=0.53 Score=44.24 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=41.9
Q ss_pred ccHHHHHcCCCCCCccEEEEcCCCCCchhHH------HHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCcc
Q 018136 14 KSFWKYYSGQEVAPIPTIFIGGNHEASNYLW------ELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 79 (360)
Q Consensus 14 gdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~------el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~ 79 (360)
..+.+++.... ..+++++|.|||+...... ......-...|+.++.....++++|.+|.+.+|..
T Consensus 69 ~~~~~~l~~L~-~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~ 139 (243)
T cd07386 69 EEAAEYLSDVP-SHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFLPGNVEFVSNPALVKIHGVDVLIYHGRS 139 (243)
T ss_pred HHHHHHHHhcc-cCCeEEEeCCCCCcccccCCCCCccHHHHhhcCCCceEEeCCCCEEEECCEEEEEECCCC
Confidence 34455554443 3689999999999754221 11111111368888877667789999999988864
No 43
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=89.69 E-value=8.4 Score=38.12 Aligned_cols=49 Identities=29% Similarity=0.329 Sum_probs=31.0
Q ss_pred EEEcCCCCCc---hhHHHHhc---------CCcccCcEEEeCC-----------------------CcEEEECCeEEEEE
Q 018136 31 IFIGGNHEAS---NYLWELYY---------GGWAAPNIYFLGF-----------------------AGVVKFGNIRIGGL 75 (360)
Q Consensus 31 yFIgGNHE~s---~~l~el~~---------GG~vapNIyyLG~-----------------------~Gvv~~~GLRIagL 75 (360)
....||||-. ..|.++.. =-|||-||++-+. .-|++++|+|||.+
T Consensus 82 a~tlGNHEFD~G~~~L~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~~~~~~~~~~~~~~~~~py~I~e~~G~kIGvi 161 (313)
T cd08162 82 AIALGNHEFDLGTDELADLIRPSAAGGGAAFPYLSANLDFSGDANLAGLATADGQQAAAIAGKIAKSTVVEVGGEKIGVV 161 (313)
T ss_pred EEeccccccccCHHHHHHHHHhhcccccCCCCEEEecccccCCcccccccccccccccccccccCCeEEEEECCEEEEEE
Confidence 3578999953 23433321 2378999976432 12446799999998
Q ss_pred cCcc
Q 018136 76 SGIY 79 (360)
Q Consensus 76 SGi~ 79 (360)
|=.-
T Consensus 162 Gltt 165 (313)
T cd08162 162 GATT 165 (313)
T ss_pred Eecc
Confidence 7544
No 44
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=89.43 E-value=3.4 Score=38.54 Aligned_cols=51 Identities=24% Similarity=0.202 Sum_probs=32.8
Q ss_pred cEEEEcCCCCCch---hHHHHh---cCCcccCcEEEeCC---------CcEEEECCeEEEEEcCcc
Q 018136 29 PTIFIGGNHEASN---YLWELY---YGGWAAPNIYFLGF---------AGVVKFGNIRIGGLSGIY 79 (360)
Q Consensus 29 pTyFIgGNHE~s~---~l~el~---~GG~vapNIyyLG~---------~Gvv~~~GLRIagLSGi~ 79 (360)
..+++.||||... .+.+.. ..-+++-|+.+-+. .-+++++|+|||.+|-..
T Consensus 71 ~d~~~~GNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~ 136 (252)
T cd00845 71 YDAVTIGNHEFDYGLDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTT 136 (252)
T ss_pred CCEEeeccccccccHHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEecc
Confidence 4667779999642 233222 22367889887541 236688999999888554
No 45
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=89.16 E-value=3.8 Score=39.71 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=32.1
Q ss_pred CccEEEEcCCCCCc---hhHHHHh---cCCcccCcEEEeC------CCcEEEECCeEEEEEcCcc
Q 018136 27 PIPTIFIGGNHEAS---NYLWELY---YGGWAAPNIYFLG------FAGVVKFGNIRIGGLSGIY 79 (360)
Q Consensus 27 PvpTyFIgGNHE~s---~~l~el~---~GG~vapNIyyLG------~~Gvv~~~GLRIagLSGi~ 79 (360)
.+-.. +.||||-. ..|.++. .-.++|-|+++-. ..-+++++|+|||.+|=..
T Consensus 75 g~Da~-~~GNHEfD~G~~~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~ 138 (285)
T cd07405 75 GYDAM-AVGNHEFDNPLEVLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTT 138 (285)
T ss_pred CCcEE-eecccccccCHHHHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEecc
Confidence 34333 44899975 2233322 2347899998762 1224468999999986544
No 46
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=87.96 E-value=2.3 Score=40.92 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=21.3
Q ss_pred CcHHHHHHHHHhC--CCEEEeeccCccccc
Q 018136 158 GSEPAAQLLEKLK--PSYWFSAHLHCKFAA 185 (360)
Q Consensus 158 GS~~i~~Ll~~Lk--PRYhFsgHlH~~f~a 185 (360)
......+|+++.+ ....|+||.|...-.
T Consensus 235 ~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~ 264 (296)
T cd00842 235 WSERYLQIINRYSDTIAGQFFGHTHRDEFR 264 (296)
T ss_pred HHHHHHHHHHHHHHhhheeeecccccceEE
Confidence 4466778888877 788999999976333
No 47
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=87.89 E-value=5.5 Score=37.25 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=71.5
Q ss_pred CCCccEEEEcCCCCCc----hhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCCCCCCCChhhhh
Q 018136 25 VAPIPTIFIGGNHEAS----NYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPYNESTIR 100 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s----~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~e~~p~~~~~~r 100 (360)
..|=.-|.|-|||+-- +.|... +.|-++|+.. |+ .+..+-|+|.-|-.+.. +...||++++-+
T Consensus 71 ~LPG~K~m~rGNHDYWw~s~skl~n~-----lp~~l~~~n~-~f-~l~n~aI~G~RgW~s~~------~~~e~~te~Dek 137 (230)
T COG1768 71 DLPGTKYMIRGNHDYWWSSISKLNNA-----LPPILFYLNN-GF-ELLNYAIVGVRGWDSPS------FDSEPLTEQDEK 137 (230)
T ss_pred cCCCcEEEEecCCccccchHHHHHhh-----cCchHhhhcc-ce-eEeeEEEEEeecccCCC------CCcCccchhHHH
Confidence 3566789999999742 222221 3355666665 33 34447777766654432 234568887754
Q ss_pred hhhhhchHHHHHH---hcccCCcc--EEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEE
Q 018136 101 SVYHVREYDVHKL---MQIEEPID--IFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWF 175 (360)
Q Consensus 101 s~yhvr~~dv~kL---~~~~~~VD--ILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhF 175 (360)
- | .|+..--++ ..++++++ |++||=.|..=. ..++ ++++++..-|+.--.
T Consensus 138 i-~-~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~----------------------~t~~-~~sevlee~rv~~~l 192 (230)
T COG1768 138 I-F-LREIGRLRLSADAALPKGVSKFIVMTHYPPFSDD----------------------GTPG-PFSEVLEEGRVSKCL 192 (230)
T ss_pred H-H-HHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCC----------------------CCCc-chHHHHhhcceeeEE
Confidence 2 2 245443333 23455664 677887776421 1122 478899999999999
Q ss_pred eeccCc
Q 018136 176 SAHLHC 181 (360)
Q Consensus 176 sgHlH~ 181 (360)
.||+|-
T Consensus 193 yGHlHg 198 (230)
T COG1768 193 YGHLHG 198 (230)
T ss_pred eeeccC
Confidence 999984
No 48
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=87.88 E-value=4.3 Score=34.25 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=43.7
Q ss_pred CccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCccccceeccCCCCCeeEE
Q 018136 119 PIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKF 198 (360)
Q Consensus 119 ~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRF 198 (360)
...|+++|--|..+. .+...+..++...+++++|+||.|..+.... ..+.+
T Consensus 81 ~~~i~~~H~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~------~~~~~ 131 (156)
T PF12850_consen 81 GFKILLSHGHPYDVQ-----------------------WDPAELREILSRENVDLVLHGHTHRPQVFKI------GGIHV 131 (156)
T ss_dssp TEEEEEESSTSSSST-----------------------TTHHHHHHHHHHTTSSEEEESSSSSEEEEEE------TTEEE
T ss_pred CCeEEEECCCCcccc-----------------------cChhhhhhhhcccCCCEEEcCCcccceEEEE------CCEEE
Confidence 679999998666642 2444577888899999999999998776543 24889
Q ss_pred EEeccCC
Q 018136 199 LALDKCL 205 (360)
Q Consensus 199 laLdk~~ 205 (360)
++.+.+.
T Consensus 132 ~~~Gs~~ 138 (156)
T PF12850_consen 132 INPGSIG 138 (156)
T ss_dssp EEE-GSS
T ss_pred EECCcCC
Confidence 9888776
No 49
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=86.49 E-value=2.3 Score=44.63 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=31.1
Q ss_pred EEEcCCCCCch---hHHHHh---cCCcccCcEEEeCC--------CcEEEECCeEEEEEcCc
Q 018136 31 IFIGGNHEASN---YLWELY---YGGWAAPNIYFLGF--------AGVVKFGNIRIGGLSGI 78 (360)
Q Consensus 31 yFIgGNHE~s~---~l~el~---~GG~vapNIyyLG~--------~Gvv~~~GLRIagLSGi 78 (360)
+...||||-.. .|..+. .--|||-||+.=.. .-|++++|+|||.+|=.
T Consensus 106 a~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~ 167 (517)
T COG0737 106 AMTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLT 167 (517)
T ss_pred EEeecccccccCHHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEec
Confidence 34556999753 344443 23489999987712 22457899999999733
No 50
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=86.17 E-value=8.4 Score=36.68 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=31.6
Q ss_pred ccEEEEcCCCCCc---hhHHHHh---cCCcccCcEEEeCC-------CcEEEECCeEEEEEcCcc
Q 018136 28 IPTIFIGGNHEAS---NYLWELY---YGGWAAPNIYFLGF-------AGVVKFGNIRIGGLSGIY 79 (360)
Q Consensus 28 vpTyFIgGNHE~s---~~l~el~---~GG~vapNIyyLG~-------~Gvv~~~GLRIagLSGi~ 79 (360)
+...++.||||-. ..+..+. .--++|-|+++-+. .-+++.+|+|||.+|=..
T Consensus 83 ~g~da~~GNHefd~g~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~ 147 (264)
T cd07411 83 LGVDAMVGHWEFTYGPERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTF 147 (264)
T ss_pred hCCeEEecccccccCHHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEecc
Confidence 3334444999965 2233222 23478999987541 224477999999887553
No 51
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=86.01 E-value=9.2 Score=36.52 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=33.1
Q ss_pred EEEEcCCCCCch---hHHHHh---cCCcccCcEEEeC-------CCcEEEEC-CeEEEEEcCcc
Q 018136 30 TIFIGGNHEASN---YLWELY---YGGWAAPNIYFLG-------FAGVVKFG-NIRIGGLSGIY 79 (360)
Q Consensus 30 TyFIgGNHE~s~---~l~el~---~GG~vapNIyyLG-------~~Gvv~~~-GLRIagLSGi~ 79 (360)
.+++.||||... .+.++. .--++|-||++.+ ..-+++++ |+|||.+|=..
T Consensus 85 d~~~lGNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~ 148 (277)
T cd07410 85 DAGTLGNHEFNYGLDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTT 148 (277)
T ss_pred CEEeecccCcccCHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCC
Confidence 466778999652 333332 2347899999874 11245789 99999998543
No 52
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=85.52 E-value=5.5 Score=37.01 Aligned_cols=35 Identities=34% Similarity=0.566 Sum_probs=23.7
Q ss_pred CccccccccHHHHHcCCCCCCccEEEEcCCCCCchhHHH
Q 018136 7 PRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWE 45 (360)
Q Consensus 7 P~ky~~lgdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~e 45 (360)
|.-|+.+-.|-. ....+.|+++++|||+......+
T Consensus 49 ~~~~~~~~~~l~----~~~~~~~~~~vpGNHD~~~~~~~ 83 (301)
T COG1409 49 PEEYRRLKELLA----RLELPAPVIVVPGNHDARVVNGE 83 (301)
T ss_pred HHHHHHHHHHHh----hccCCCceEeeCCCCcCCchHHH
Confidence 344444444444 45778899999999998766544
No 53
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=85.38 E-value=6.1 Score=41.93 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=31.0
Q ss_pred EEEcCCCCCc---hhHHHHh---cCCcccCcEEEeC-------CCcEEEECCeEEEEEcCc
Q 018136 31 IFIGGNHEAS---NYLWELY---YGGWAAPNIYFLG-------FAGVVKFGNIRIGGLSGI 78 (360)
Q Consensus 31 yFIgGNHE~s---~~l~el~---~GG~vapNIyyLG-------~~Gvv~~~GLRIagLSGi 78 (360)
+++.||||-. ..|.++. .-.|+|-||++-. ..-+++++|+|||.+|=.
T Consensus 112 a~tlGNHEFD~G~~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~ 172 (551)
T PRK09558 112 AMAVGNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLT 172 (551)
T ss_pred EEcccccccCcCHHHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEe
Confidence 3445999965 3344433 2348999998753 122346799999999744
No 54
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=83.49 E-value=8.9 Score=35.78 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=34.7
Q ss_pred HcCCCCCCccEEEEcCCCCCchh---HHHHhcCCcccCcEEEeCC---------CcEEEECCeEEEEEcCccCC
Q 018136 20 YSGQEVAPIPTIFIGGNHEASNY---LWELYYGGWAAPNIYFLGF---------AGVVKFGNIRIGGLSGIYNA 81 (360)
Q Consensus 20 ~sG~~kaPvpTyFIgGNHE~s~~---l~el~~GG~vapNIyyLG~---------~Gvv~~~GLRIagLSGi~~~ 81 (360)
..-.+.+.+-..-+++||+-.-- +.+.. ..+-.-||.+.|. .-+++++|+|||.+|-....
T Consensus 70 ~~~L~~~G~d~~tlaNNH~fD~G~~gl~~t~-~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~ 142 (239)
T cd07381 70 ADALKAAGFDVVSLANNHTLDYGEEGLLDTL-DALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGT 142 (239)
T ss_pred HHHHHHhCCCEEEcccccccccchHHHHHHH-HHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCC
Confidence 33334567777778889987522 22111 0011234555543 23457899999999876543
No 55
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=82.79 E-value=6.8 Score=45.46 Aligned_cols=49 Identities=22% Similarity=0.133 Sum_probs=31.6
Q ss_pred EEEEcCCCCCc---hhHHHHh-c--------------CCcccCcEEEeC---------CCcEEEECCeEEEEEcCc
Q 018136 30 TIFIGGNHEAS---NYLWELY-Y--------------GGWAAPNIYFLG---------FAGVVKFGNIRIGGLSGI 78 (360)
Q Consensus 30 TyFIgGNHE~s---~~l~el~-~--------------GG~vapNIyyLG---------~~Gvv~~~GLRIagLSGi 78 (360)
-+++.||||-. ..+.+.. . --|||-||++-. ..-|++++|+|||.+|=+
T Consensus 726 d~~~~GNHEfd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGlt 801 (1163)
T PRK09419 726 DASTFGNHEFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLT 801 (1163)
T ss_pred CEEEecccccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEec
Confidence 35688999953 3333322 1 137899998742 223457899999998754
No 56
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=82.61 E-value=6 Score=35.70 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHhCCCEEEeeccCccccceeccCCCCCeeEEEEecc
Q 018136 158 GSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDK 203 (360)
Q Consensus 158 GS~~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRFlaLdk 203 (360)
....+.+++..-++.+.++||.|........ .+.+++++.
T Consensus 177 ~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~------~~~~~n~G~ 216 (217)
T cd07398 177 FEEAVARLARRKGVDGVICGHTHRPALHELD------GKLYINLGD 216 (217)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCeEEEC------CEEEEECCC
Confidence 3456777788899999999999977544332 356666654
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=79.71 E-value=0.95 Score=49.09 Aligned_cols=24 Identities=25% Similarity=0.603 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCcccccccc
Q 018136 336 DHKGPDLDPEEIPIDDEDELEELD 359 (360)
Q Consensus 336 ~~~~~~~~~~~i~~~~~~~~~~~~ 359 (360)
+...+.+|||||+||+|++|||+|
T Consensus 790 ~~~~s~vnpdEidl~~ded~~e~d 813 (835)
T KOG2047|consen 790 TQEYSQVNPDEIDLDEDEDEDEDD 813 (835)
T ss_pred ccccCcCCccccccCCCccccccc
Confidence 334557999999999965555443
No 58
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=78.84 E-value=5.1 Score=36.24 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHHHhCCCEEEeeccCcc
Q 018136 156 TLGSEPAAQLLEKLKPSYWFSAHLHCK 182 (360)
Q Consensus 156 ~lGS~~i~~Ll~~LkPRYhFsgHlH~~ 182 (360)
..++.....+++.-..+..|+||.|..
T Consensus 150 ~~~~~~~~~~~~~~~v~~v~~GH~H~~ 176 (199)
T cd07383 150 KINSGLFKALLERGDVKGVFCGHDHGN 176 (199)
T ss_pred cCCcHHHHHHHHcCCeEEEEeCCCCCc
Confidence 456677778888888999999999973
No 59
>PHA02546 47 endonuclease subunit; Provisional
Probab=78.61 E-value=2.6 Score=42.03 Aligned_cols=49 Identities=24% Similarity=0.171 Sum_probs=31.6
Q ss_pred CCCCccEEEEcCCCCCchh-------HHHHhcCCcccCcEEEeCCCcEEEECCeEEEEE
Q 018136 24 EVAPIPTIFIGGNHEASNY-------LWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGL 75 (360)
Q Consensus 24 ~kaPvpTyFIgGNHE~s~~-------l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagL 75 (360)
+++++|+|+|.|||+.... ..++. ...+|++..+....+.++|++|..+
T Consensus 73 ~~~gi~v~~I~GNHD~~~~~~~~~~~~~~ll---~~~~~v~v~~~~~~v~i~g~~i~~l 128 (340)
T PHA02546 73 KEAGITLHVLVGNHDMYYKNTIRPNAPTELL---GQYDNITVIDEPTTVDFDGCSIDLI 128 (340)
T ss_pred HHCCCeEEEEccCCCcccccccccCchHHHH---hhCCCEEEeCCceEEEECCEEEEEC
Confidence 4578999999999996311 11111 1246787777766667777766654
No 60
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=74.32 E-value=6.1 Score=38.31 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=46.5
Q ss_pred ccccccHHHHHcCCCCCCccEEEEcCCCCCchhHHHH-------hcCCcccCcEEEeCCCcEEEECCeEEEEEcCc
Q 018136 10 YREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWEL-------YYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGI 78 (360)
Q Consensus 10 y~~lgdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~el-------~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi 78 (360)
|..+..|..|++... ..+|+..++|||+..+..... .....--.|+..+..-..++++|+||.|.||-
T Consensus 78 ~~~~~~ld~~l~~l~-~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGq 152 (257)
T cd07387 78 VEAVKELDNFLSQLA-SSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQ 152 (257)
T ss_pred HHHHHHHHHHHHhhh-cCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCCcEEeCCCeEEEECCEEEEEECCC
Confidence 445666667766544 368999999999988765321 11111124677777666778999999999994
No 61
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=72.76 E-value=21 Score=33.41 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=34.4
Q ss_pred cCCCCCCccEEEEcCCCCCchh---HHHHhcCCcccCcEEEeCC---------CcEEEECCeEEEEEcCccC
Q 018136 21 SGQEVAPIPTIFIGGNHEASNY---LWELYYGGWAAPNIYFLGF---------AGVVKFGNIRIGGLSGIYN 80 (360)
Q Consensus 21 sG~~kaPvpTyFIgGNHE~s~~---l~el~~GG~vapNIyyLG~---------~Gvv~~~GLRIagLSGi~~ 80 (360)
...+.+.+-..-+++||+-.-- +.+... .+-.-||.++|. .-+++++|+|||.+|-...
T Consensus 67 ~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~-~l~~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ig~t~~ 137 (239)
T smart00854 67 AALKAAGFDVVSLANNHSLDYGEEGLLDTLA-ALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYG 137 (239)
T ss_pred HHHHHhCCCEEEeccCcccccchHHHHHHHH-HHHHCCCCEeeCCCChHHhhCcEEEEECCEEEEEEEEEcC
Confidence 3334567777778889987522 222110 011235555553 2245789999999997654
No 62
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=71.92 E-value=2.7 Score=42.93 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=39.8
Q ss_pred eeeeCHHHHHHHHHhCCCCCCCCC---CC-CCCCCCCcchHHHHHHHHHhhhCC-CCCCCceEecCC
Q 018136 224 EIQYDEEWLAITRTFNSVFPLTSQ---SA-NFGGVQHDMNDCRQWVRSRLQERG-AKPFEFVRTVPC 285 (360)
Q Consensus 224 ~l~yD~ewlai~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~p~~f~~tap~ 285 (360)
...++..||..+|+.+.+..+.+. +. ..+.....+.+..+||+++..++. .++.||..|||.
T Consensus 357 ~~~~f~a~l~rl~~~~~~~~~~~d~dlps~~~~e~~t~~~~~e~~~de~~~~~~~~~~~~~~nt~p~ 423 (456)
T KOG2863|consen 357 QTSVFSAELSRLRAMHVLREIERDIDLPSYDSPEPYTLKIQKEEMVDEKADEDFMTIARNFCNTAPH 423 (456)
T ss_pred chhhHHHHHhhhhhhhhhhhhhcCCCccccCCccccccccHHHHHhhhhhcccccccchhhccCCCC
Confidence 467788999988887666544432 11 122223455667788988874433 358999999974
No 63
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=70.16 E-value=5.5 Score=37.77 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=32.1
Q ss_pred EEEEcCCCCCc---hhHHHHh---cCCcccCcEEEeC--C-----CcEEEEC-CeEEEEEcCcc
Q 018136 30 TIFIGGNHEAS---NYLWELY---YGGWAAPNIYFLG--F-----AGVVKFG-NIRIGGLSGIY 79 (360)
Q Consensus 30 TyFIgGNHE~s---~~l~el~---~GG~vapNIyyLG--~-----~Gvv~~~-GLRIagLSGi~ 79 (360)
.+++.||||.. ..+.+.. .-.++|-|++... . .-+++++ |+|||.+|=.-
T Consensus 72 d~~~~GNHefd~G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~ 135 (257)
T cd07408 72 DAVTPGNHEFDYGLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTT 135 (257)
T ss_pred cEEccccccccCCHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecC
Confidence 34667999964 2233222 3348899998763 2 2344678 99999998553
No 64
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=68.91 E-value=5.6 Score=37.07 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHhCCCEEEeeccCcccccee
Q 018136 158 GSEPAAQLLEKLKPSYWFSAHLHCKFAAVV 187 (360)
Q Consensus 158 GS~~i~~Ll~~LkPRYhFsgHlH~~f~a~~ 187 (360)
+.+.+..++..++|...||||.|..+-...
T Consensus 123 ~~~~~~~~~~~~~p~~Ifs~H~H~s~~~~~ 152 (195)
T cd08166 123 GGQALKHVVTDLDPDLIFSAHRHKSSIFMY 152 (195)
T ss_pred ccHHHHHHHHhcCceEEEEcCccceeeEEe
Confidence 334789999999999999999998766554
No 65
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=61.10 E-value=24 Score=39.47 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=30.0
Q ss_pred EEEcCCCCCc---hhHHHHh---cCCcccCcEEEeC-------------CCcEEEE---------CCeEEEEEcCc
Q 018136 31 IFIGGNHEAS---NYLWELY---YGGWAAPNIYFLG-------------FAGVVKF---------GNIRIGGLSGI 78 (360)
Q Consensus 31 yFIgGNHE~s---~~l~el~---~GG~vapNIyyLG-------------~~Gvv~~---------~GLRIagLSGi 78 (360)
+..-||||-. .+|.++. .--+||-||+.-. ..-|++. +|+|||.+|=.
T Consensus 133 a~tlGNHEFdyG~d~L~~~l~~a~fPvl~ANV~~~~~~~~~~~~~~~~~PY~I~e~~v~~~~G~~~gvKIGiIGlt 208 (780)
T PRK09418 133 VISLGNHEFNYGLDYLNKVISKTEFPVINSNVYKDDKDNNEENDQNYFKPYHVFEKEVEDESGQKQKVKIGVMGFV 208 (780)
T ss_pred EEeccccccccCHHHHHHHHhhCCCCEEEeeeecccccccccccccccCCEEEEEeeecccccccCCceEEEEEec
Confidence 4678999943 3344433 2348999998642 1223333 68999999844
No 66
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=59.49 E-value=82 Score=32.59 Aligned_cols=47 Identities=11% Similarity=-0.098 Sum_probs=31.5
Q ss_pred CccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCcc
Q 018136 119 PIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCK 182 (360)
Q Consensus 119 ~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~ 182 (360)
+-=|++-|-.-.....+++...|. ..+.-|+++-+-...++||.|+.
T Consensus 214 ~WkIVvGHhPIySsG~hg~~~~L~-----------------~~L~PLL~ky~VdlYisGHDH~l 260 (394)
T PTZ00422 214 DYIIVVGDKPIYSSGSSKGDSYLS-----------------YYLLPLLKDAQVDLYISGYDRNM 260 (394)
T ss_pred CeEEEEecCceeecCCCCCCHHHH-----------------HHHHHHHHHcCcCEEEEccccce
Confidence 344777787666665554433321 14667788888999999998865
No 67
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=59.20 E-value=33 Score=30.95 Aligned_cols=59 Identities=19% Similarity=0.036 Sum_probs=41.8
Q ss_pred CCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeeccCccccceeccCCCCCeeE
Q 018136 118 EPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAHLHCKFAAVVQHGEDSPVTK 197 (360)
Q Consensus 118 ~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TR 197 (360)
.+.-|+++|-++.+.. .....+..+++...+.+.++||.|..+..... .++
T Consensus 77 ~g~~i~l~HG~~~~~~-----------------------~~~~~~~~~~~~~~~dvii~GHTH~p~~~~~~------g~~ 127 (178)
T cd07394 77 GQFKIGLIHGHQVVPW-----------------------GDPDSLAALQRQLDVDILISGHTHKFEAFEHE------GKF 127 (178)
T ss_pred CCEEEEEEECCcCCCC-----------------------CCHHHHHHHHHhcCCCEEEECCCCcceEEEEC------CEE
Confidence 4678999998774321 12334566777788899999999987654432 378
Q ss_pred EEEeccCC
Q 018136 198 FLALDKCL 205 (360)
Q Consensus 198 FlaLdk~~ 205 (360)
+|+-+.+.
T Consensus 128 viNPGSv~ 135 (178)
T cd07394 128 FINPGSAT 135 (178)
T ss_pred EEECCCCC
Confidence 88888775
No 68
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=57.98 E-value=16 Score=31.75 Aligned_cols=123 Identities=23% Similarity=0.281 Sum_probs=62.7
Q ss_pred CCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCCCCCCC--Chhhhhhhh
Q 018136 26 APIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPPY--NESTIRSVY 103 (360)
Q Consensus 26 aPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~e~~p~--~~~~~rs~y 103 (360)
..+-.++|-=.|.++-....+ ..+..++.++...+.++++|++|-++............. +..-| +.+. .++|
T Consensus 35 ~~~D~IlisH~H~DH~~~~~l---~~~~~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~-~~~~~~i~~~g-~~i~ 109 (163)
T PF13483_consen 35 PKADAILISHSHPDHFDPETL---KRLDRDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRG-ENVGYLIEVGG-VTIY 109 (163)
T ss_dssp -B-SEEEESSSSTTT-CCCCC---CCHHTSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TT-CCEEEEEEETT-EEEE
T ss_pred CCCCEEEECCCccccCChhHh---hhcccccEEEccceEEEEeeeEEEEEeeeccccCCCCcC-CeEEEEEEeCC-CEEE
Confidence 445577887777665322111 012458888888888999999999988765322111000 00011 1111 2455
Q ss_pred hhchH----HHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHHHHHHHHHhCCCEEEeec
Q 018136 104 HVREY----DVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEPAAQLLEKLKPSYWFSAH 178 (360)
Q Consensus 104 hvr~~----dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~i~~Ll~~LkPRYhFsgH 178 (360)
|.-.. +...+.++ +++||++.---. ....|.+.+.+++++||||+..--|
T Consensus 110 ~~Gd~~~~~~~~~~~~~-~~vDvl~~p~~g------------------------~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 110 HAGDTGFPPDDEQLKQL-GKVDVLFLPVGG------------------------PFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp E-TT--S---HHHHHHH--S-SEEEEE--T------------------------TTS--HHHHHHHHHHCT-SEEEEES
T ss_pred EECCCccCCCHHHHhcc-cCCCEEEecCCC------------------------CcccCHHHHHHHHHHcCCCEEEeCC
Confidence 53111 22233332 479999975211 1246778899999999999988655
No 69
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=54.91 E-value=13 Score=36.17 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=30.1
Q ss_pred EEEcCCCCCchh---HHH---Hh---cCCcccCcEEEeCC----------CcEEEEC-CeEEEEEcCc
Q 018136 31 IFIGGNHEASNY---LWE---LY---YGGWAAPNIYFLGF----------AGVVKFG-NIRIGGLSGI 78 (360)
Q Consensus 31 yFIgGNHE~s~~---l~e---l~---~GG~vapNIyyLG~----------~Gvv~~~-GLRIagLSGi 78 (360)
+++.||||-... +.. +. .--|+|-||++-.. .-+++.+ |+|||.+|=.
T Consensus 88 a~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGlt 155 (282)
T cd07407 88 LLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFL 155 (282)
T ss_pred EEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEe
Confidence 467899998421 222 21 23589999987532 1233555 9999988644
No 70
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=51.11 E-value=32 Score=35.53 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=14.9
Q ss_pred CCCccEEEEcCCCCCch
Q 018136 25 VAPIPTIFIGGNHEASN 41 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s~ 41 (360)
.+.+|++.|.|||+...
T Consensus 108 ~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 108 NVAIPVFSIHGNHDDPS 124 (405)
T ss_pred cCCCCEEEEcCCCCCcc
Confidence 46899999999999875
No 71
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=48.18 E-value=24 Score=35.10 Aligned_cols=141 Identities=18% Similarity=0.183 Sum_probs=78.1
Q ss_pred cHHHHHcCCCCCCccEEEEcCCCCCchh----HHH---HhcCCcccCcEEEeCCCcEEEECC--eEEEE---EcCccCCc
Q 018136 15 SFWKYYSGQEVAPIPTIFIGGNHEASNY----LWE---LYYGGWAAPNIYFLGFAGVVKFGN--IRIGG---LSGIYNAR 82 (360)
Q Consensus 15 dF~~Y~sG~~kaPvpTyFIgGNHE~s~~----l~e---l~~GG~vapNIyyLG~~Gvv~~~G--LRIag---LSGi~~~~ 82 (360)
.|...|+.-. .-.|-|-|.|||+-..- |.. ...--|+|+..||... -++...+ .++.. ++-. ..+
T Consensus 102 sF~nIYT~pS-LQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~rsf~~~a-e~ve~f~v~~~~f~~d~~~~~-~~~ 178 (336)
T KOG2679|consen 102 SFENIYTAPS-LQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPRSFYVDA-EIVEMFFVDTTPFMDDTFTLC-TDD 178 (336)
T ss_pred hhhhcccCcc-cccchhhhccCccccCchhhhhhHHHHhhccceecccHHhhcc-eeeeeeccccccchhhheecc-ccc
Confidence 4666666543 44699999999975422 221 1255699999998876 3444333 22222 1111 111
Q ss_pred cccCCCCCCCCCChhhhhhhhhhchHHHH-HHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCcHH
Q 018136 83 HYRLGHYERPPYNESTIRSVYHVREYDVH-KLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGSEP 161 (360)
Q Consensus 83 ~y~~~~~e~~p~~~~~~rs~yhvr~~dv~-kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS~~ 161 (360)
.|.-. -..|- ..-++++ ..+++ .|...+.+-=|++-|-.=..+..+|+...|- ..
T Consensus 179 ~ydw~--~v~PR-~~~~~~~----l~~le~~L~~S~a~wkiVvGHh~i~S~~~HG~T~eL~-----------------~~ 234 (336)
T KOG2679|consen 179 VYDWR--GVLPR-VKYLRAL----LSWLEVALKASRAKWKIVVGHHPIKSAGHHGPTKELE-----------------KQ 234 (336)
T ss_pred ccccc--cCChH-HHHHHHH----HHHHHHHHHHhhcceEEEecccceehhhccCChHHHH-----------------HH
Confidence 11100 01110 0011111 11222 2333345667888898888888899887652 23
Q ss_pred HHHHHHHhCCCEEEeeccCcc
Q 018136 162 AAQLLEKLKPSYWFSAHLHCK 182 (360)
Q Consensus 162 i~~Ll~~LkPRYhFsgHlH~~ 182 (360)
+.-|+++-+-.-.++||-||-
T Consensus 235 LlPiL~~n~VdlY~nGHDHcL 255 (336)
T KOG2679|consen 235 LLPILEANGVDLYINGHDHCL 255 (336)
T ss_pred HHHHHHhcCCcEEEecchhhh
Confidence 666788888889999998763
No 72
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=47.56 E-value=9.5 Score=38.35 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=24.6
Q ss_pred ccccHHHHHcCCCCCCccEEEEcCCCCCchhHH
Q 018136 12 EMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLW 44 (360)
Q Consensus 12 ~lgdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~ 44 (360)
.+..|.+.+.-...+.+|+|.|.|||+....+.
T Consensus 60 a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~~~ 92 (390)
T COG0420 60 ALKLFLEALRRLKDAGIPVVVIAGNHDSPSRLS 92 (390)
T ss_pred HHHHHHHHHHHhccCCCcEEEecCCCCchhccc
Confidence 445566666666668899999999999876543
No 73
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=44.26 E-value=51 Score=38.44 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=30.9
Q ss_pred EEEcCCCCCc---hhHHHHh---cCCcccCcEEEeCC------CcEEEE---------CCeEEEEEcCc
Q 018136 31 IFIGGNHEAS---NYLWELY---YGGWAAPNIYFLGF------AGVVKF---------GNIRIGGLSGI 78 (360)
Q Consensus 31 yFIgGNHE~s---~~l~el~---~GG~vapNIyyLG~------~Gvv~~---------~GLRIagLSGi 78 (360)
.++.||||-. ..|.+.. .--+||-||+.-.. .-|++. +|+|||.+|=.
T Consensus 130 a~~lGNHEFd~G~~~L~~~~~~a~fp~l~aNv~~~~~~~~~~py~I~~~~~~~~~g~~~gvkIgiiG~~ 198 (1163)
T PRK09419 130 AGTLGNHEFNYGLDFLDGTIKGANFPVLNANVKYKNGKNVYTPYKIKEKTVTDENGKKQGVKVGYIGFV 198 (1163)
T ss_pred EEeecccccccCHHHHHHHHhcCCCCEEEeeeecCCCCcccCCEEEEEEEeeccCCCCCCeEEEEEecC
Confidence 5668999953 3344433 23488999975322 224456 89999999754
No 74
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=42.66 E-value=21 Score=31.46 Aligned_cols=19 Identities=42% Similarity=0.520 Sum_probs=16.0
Q ss_pred HHHHhCCCEEEeeccCccc
Q 018136 165 LLEKLKPSYWFSAHLHCKF 183 (360)
Q Consensus 165 Ll~~LkPRYhFsgHlH~~f 183 (360)
++...+|++++|||.|-..
T Consensus 117 ~~~~~~~~~~l~GH~H~~~ 135 (156)
T cd08165 117 LLQWLKPRLVLSGHTHSFC 135 (156)
T ss_pred HHHhhCCCEEEEcccCCCc
Confidence 6677899999999999743
No 75
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.52 E-value=39 Score=30.77 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.9
Q ss_pred CcEEEECCeEEEEEcCc
Q 018136 62 AGVVKFGNIRIGGLSGI 78 (360)
Q Consensus 62 ~Gvv~~~GLRIagLSGi 78 (360)
.++++++-+||+..+|-
T Consensus 72 ~kvvtvGqfkIG~chGh 88 (183)
T KOG3325|consen 72 NKVVTVGQFKIGLCHGH 88 (183)
T ss_pred cceEEeccEEEEeecCc
Confidence 57889999999999875
No 76
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=40.58 E-value=87 Score=34.32 Aligned_cols=46 Identities=22% Similarity=0.162 Sum_probs=28.3
Q ss_pred EEEcCCCCCc---hhHHHHh---cCCcccCcEEEeCC-------CcEEEE-----C----CeEEEEEc
Q 018136 31 IFIGGNHEAS---NYLWELY---YGGWAAPNIYFLGF-------AGVVKF-----G----NIRIGGLS 76 (360)
Q Consensus 31 yFIgGNHE~s---~~l~el~---~GG~vapNIyyLG~-------~Gvv~~-----~----GLRIagLS 76 (360)
....||||-. ..|.++. .--+||-||+..+. .-|++. + |+|||.+|
T Consensus 113 a~tlGNHEFd~G~~~L~~~~~~a~fP~l~ANv~~~~~~~~~~~py~I~e~~v~~~~G~~~~vkIGiIG 180 (649)
T PRK09420 113 VGNLGNHEFNYGLDYLKKALAGAKFPYVNANVIDAKTGKPLFTPYLIKEKEVKDKDGKEHTIKIGYIG 180 (649)
T ss_pred EEeccchhhhcCHHHHHHHHhcCCCCEEEEEEEecCCCCcccCCeEEEEEEeeccCCCccceEEEEEE
Confidence 5678999953 3344443 23489999985432 113333 3 59999987
No 77
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=39.12 E-value=2.1e+02 Score=30.18 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=67.0
Q ss_pred CCCccEEEEcCCCCCchh----HHH------Hh-cCCcccCcEEEeCCCcEEEECCeEEEEEcCccCCccccCCCCCCCC
Q 018136 25 VAPIPTIFIGGNHEASNY----LWE------LY-YGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNARHYRLGHYERPP 93 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s~~----l~e------l~-~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi~~~~~y~~~~~e~~p 93 (360)
.+-+|..++.||||.... +.. .+ .+++--.|+||= +.++|+++.+||--+.. .+. .
T Consensus 206 As~vPymv~~GNHE~d~~~~~~F~~y~~Rf~mP~~~s~s~~~l~YS-----fd~G~vhfv~lsse~~~-~~~-------~ 272 (452)
T KOG1378|consen 206 ASYVPYMVCSGNHEIDWPPQPCFVPYSARFNMPGNSSESDSNLYYS-----FDVGGVHFVVLSTETYY-NFL-------K 272 (452)
T ss_pred hccCceEEecccccccCCCcccccccceeeccCCCcCCCCCceeEE-----EeeccEEEEEEeccccc-ccc-------c
Confidence 466899999999997643 111 01 122323357653 57899999999733221 111 1
Q ss_pred CChhhhhhhhhhchHHHHHHhcccCCccEEEeCCCCCCccccCchhhHhhhcchhhhhccCCCCCc--HHHHHHHHHhCC
Q 018136 94 YNESTIRSVYHVREYDVHKLMQIEEPIDIFLSHDWPCGITDYGNCKELVRHKQYFEKEIQDGTLGS--EPAAQLLEKLKP 171 (360)
Q Consensus 94 ~~~~~~rs~yhvr~~dv~kL~~~~~~VDILLSHdWP~gI~~~g~~~~Ll~~kp~f~~~~~~~~lGS--~~i~~Ll~~LkP 171 (360)
++. -|.--+.|+.+..+.+++==|++-|- |-.- ++...+ . ..+...+ ..+..|+.+-|-
T Consensus 273 ~~~-----QY~WL~~dL~~v~r~~tPWlIv~~Hr-P~Y~---S~~~~~------~----reG~~~~~~~~LE~l~~~~~V 333 (452)
T KOG1378|consen 273 GTA-----QYQWLERDLASVDRKKTPWLIVQGHR-PMYC---SSNDAH------Y----REGEFESMREGLEPLFVKYKV 333 (452)
T ss_pred cch-----HHHHHHHHHHHhcccCCCeEEEEecc-ccee---cCCchh------h----ccCcchhhHHHHHHHHHHhce
Confidence 111 13333455554433223445555552 2221 111001 1 1122223 368999999999
Q ss_pred CEEEeeccCc
Q 018136 172 SYWFSAHLHC 181 (360)
Q Consensus 172 RYhFsgHlH~ 181 (360)
.-.|+||.|.
T Consensus 334 Dvvf~GHvH~ 343 (452)
T KOG1378|consen 334 DVVFWGHVHR 343 (452)
T ss_pred eEEEecccee
Confidence 9999999984
No 78
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.89 E-value=16 Score=34.74 Aligned_cols=46 Identities=26% Similarity=0.511 Sum_probs=25.6
Q ss_pred HHHHHcCCCCC-CccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCC
Q 018136 16 FWKYYSGQEVA-PIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFA 62 (360)
Q Consensus 16 F~~Y~sG~~ka-PvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~ 62 (360)
|.+++...+.. ++|+|+|.|||+....+.... .---..||+.++..
T Consensus 63 ~~~~l~~l~~~~~i~v~~i~GNHD~~~~~~~~~-~l~~~~~v~i~~~~ 109 (253)
T TIGR00619 63 FNAFFRNLSDANPIPIVVISGNHDSAQRLSAAK-KLLIELGVFVVGFP 109 (253)
T ss_pred HHHHHHHHHhcCCceEEEEccCCCChhhcccch-hHHHhCCeEEEEec
Confidence 44444443344 499999999999765432110 00012577766653
No 79
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=38.22 E-value=20 Score=36.82 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=25.9
Q ss_pred HHHHcCCCCCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCC
Q 018136 17 WKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFA 62 (360)
Q Consensus 17 ~~Y~sG~~kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~ 62 (360)
.+.+...++..+|+|+|.|||+....+.... .-.-..||+.++..
T Consensus 64 ~~~l~~L~~~~~~v~~I~GNHD~~~~l~~~~-~~l~~~gi~vl~~~ 108 (407)
T PRK10966 64 NRFVVNLQQTGCQLVVLAGNHDSVATLNESR-DLLAFLNTTVIASA 108 (407)
T ss_pred HHHHHHHHhcCCcEEEEcCCCCChhhhhhHH-HHHHHCCcEEEecc
Confidence 3333333455789999999999876543210 00013467777653
No 80
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=37.43 E-value=94 Score=33.85 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=28.8
Q ss_pred EEEcCCCCCc---hhHHHHh---cCCcccCcEEEeCC-------CcEEEE-----C----CeEEEEEcCc
Q 018136 31 IFIGGNHEAS---NYLWELY---YGGWAAPNIYFLGF-------AGVVKF-----G----NIRIGGLSGI 78 (360)
Q Consensus 31 yFIgGNHE~s---~~l~el~---~GG~vapNIyyLG~-------~Gvv~~-----~----GLRIagLSGi 78 (360)
....||||-. ..|.++. .--+||-||+.... .-|++. + |+|||.+|=.
T Consensus 90 a~tlGNHEFd~G~~~L~~~~~~a~fP~l~aNv~~~~~~~~~~~py~I~~~~~~~~~G~~~~~kIGiIG~~ 159 (626)
T TIGR01390 90 VGNLGNHEFNYGLPFLKQAIAAAKFPIVNANVVDAGTGQPAFTPYLIQERSVVDTDGKPHTLKVGYIGFV 159 (626)
T ss_pred EEecccccccccHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCeEEEEEEeeccCCCccceEEEEEEec
Confidence 3567999954 3344433 33488999976421 123333 2 6999999754
No 81
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=31.22 E-value=1.3e+02 Score=34.05 Aligned_cols=47 Identities=21% Similarity=0.085 Sum_probs=29.0
Q ss_pred EEEcCCCCCc---hhHHHHh---cCCcccCcEEEeCC-------CcEEEE-----CC----eEEEEEcC
Q 018136 31 IFIGGNHEAS---NYLWELY---YGGWAAPNIYFLGF-------AGVVKF-----GN----IRIGGLSG 77 (360)
Q Consensus 31 yFIgGNHE~s---~~l~el~---~GG~vapNIyyLG~-------~Gvv~~-----~G----LRIagLSG 77 (360)
....||||-. ..|.+.. .--+||-||+..+. .-|++. +| +|||.+|=
T Consensus 204 A~tLGNHEFDyG~d~L~~~l~~a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~~d~~G~~~~vKIGiIGl 272 (814)
T PRK11907 204 AGTLGNHEFNYGLDYLEKVIATANMPIVNANVLDPTTGDFLYTPYTIVTKTFTDTEGKKVTLNIGITGI 272 (814)
T ss_pred EEEechhhcccCHHHHHHHHHhCCCCEEEeeeeecCCCCccCCCeEEEEEEEecCCCcccceEEEEEEe
Confidence 4667999954 3344433 23489999986532 123333 56 99999974
No 82
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=31.09 E-value=1.1e+02 Score=32.57 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=46.5
Q ss_pred CccccccccHHHHHcCCCCCCccEEEEcCCCCCchhHHHHh------cCCcccCcEEEeCCCcEEEECCeEEEEEcCc
Q 018136 7 PRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELY------YGGWAAPNIYFLGFAGVVKFGNIRIGGLSGI 78 (360)
Q Consensus 7 P~ky~~lgdF~~Y~sG~~kaPvpTyFIgGNHE~s~~l~el~------~GG~vapNIyyLG~~Gvv~~~GLRIagLSGi 78 (360)
++=|.+...|.+|+.-.- -.+-++.++|||++...-...+ ..-....|+.+++.--.+.++|..+..-+|.
T Consensus 289 ~di~~qy~~~A~~L~~vp-~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~hG~ 365 (481)
T COG1311 289 ADIYEQYEELAEFLDQVP-EHIKVFIMPGNHDAVRQALPQPHFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIYHGR 365 (481)
T ss_pred ccchHHHHHHHHHHhhCC-CCceEEEecCCCCccccccCCCCcchhhcccccccceEecCCCcEEEECCEEEEEecCC
Confidence 334444555666665332 3467888999999875432211 1112345799998888889999999988875
No 83
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.38 E-value=1.1e+02 Score=29.47 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=39.9
Q ss_pred cccHHHHHcCCC-----------------CCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEE
Q 018136 13 MKSFWKYYSGQE-----------------VAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGL 75 (360)
Q Consensus 13 lgdF~~Y~sG~~-----------------kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagL 75 (360)
|||+-+..-|.. ....++|||.|||+- .+.... + .-+-++..+...-+++..|-|+.-+
T Consensus 36 lGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Df--ll~~~f-~-~~~g~~~l~~~~~~~~l~g~~~Ll~ 111 (237)
T COG2908 36 LGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDF--LLGKRF-A-QEAGGMTLLPDPIVLDLYGKRILLA 111 (237)
T ss_pred echhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHH--HHHHHH-H-hhcCceEEcCcceeeeecCcEEEEE
Confidence 566666666654 346899999999972 222211 1 1123456666767778899999988
Q ss_pred cC
Q 018136 76 SG 77 (360)
Q Consensus 76 SG 77 (360)
=|
T Consensus 112 HG 113 (237)
T COG2908 112 HG 113 (237)
T ss_pred eC
Confidence 77
No 84
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=28.00 E-value=37 Score=28.53 Aligned_cols=38 Identities=32% Similarity=0.499 Sum_probs=25.0
Q ss_pred cHHHHHc---CCCCCCccEEEEcCCCCCc-hhHHHHhcCCcccC
Q 018136 15 SFWKYYS---GQEVAPIPTIFIGGNHEAS-NYLWELYYGGWAAP 54 (360)
Q Consensus 15 dF~~Y~s---G~~kaPvpTyFIgGNHE~s-~~l~el~~GG~vap 54 (360)
++.+|+. |.+ .+|.+||+|.|--. +.+..+...|.+.+
T Consensus 54 eiq~~l~~~tg~~--tvP~vFI~Gk~iGG~~dl~~lh~~G~L~~ 95 (104)
T KOG1752|consen 54 EIQKALKKLTGQR--TVPNVFIGGKFIGGASDLMALHKSGELVP 95 (104)
T ss_pred HHHHHHHHhcCCC--CCCEEEECCEEEcCHHHHHHHHHcCCHHH
Confidence 4555554 444 68999999998543 56667666666544
No 85
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=27.89 E-value=87 Score=27.56 Aligned_cols=47 Identities=21% Similarity=-0.094 Sum_probs=25.3
Q ss_pred CCCccEEEEcCCCCCchhHHHHhcCCcccCcEEEeCCCcEEEECCeEEEEE
Q 018136 25 VAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGL 75 (360)
Q Consensus 25 kaPvpTyFIgGNHE~s~~l~el~~GG~vapNIyyLG~~Gvv~~~GLRIagL 75 (360)
+.+.++++|.|||+......... +.... .++.....++++|.||+..
T Consensus 67 ~~~~~~~~v~GNHD~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~i~l~ 113 (168)
T cd07390 67 RLNGRKHLIKGNHDSSLERKLLA--FLLKF--ESVLQAVRLKIGGRRVYLS 113 (168)
T ss_pred hCCCCeEEEeCCCCchhhhcccc--ccccc--ceeeeEEEEEECCEEEEEE
Confidence 45678999999998653322110 00001 1233334456677777765
No 86
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=26.97 E-value=1.3e+02 Score=28.23 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=36.6
Q ss_pred HcCCCCCCccEEEEcCCCCCchhHHHHhcC--CcccCcEEEeC------C---CcEEEECCeEEEEEcCccCCc
Q 018136 20 YSGQEVAPIPTIFIGGNHEASNYLWELYYG--GWAAPNIYFLG------F---AGVVKFGNIRIGGLSGIYNAR 82 (360)
Q Consensus 20 ~sG~~kaPvpTyFIgGNHE~s~~l~el~~G--G~vapNIyyLG------~---~Gvv~~~GLRIagLSGi~~~~ 82 (360)
..-.+.+.+-.+-++.||...--...+..- -.-..+|.+.| . .-+++++|+|||.+|-.....
T Consensus 68 ~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~ 141 (250)
T PF09587_consen 68 LDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGEN 141 (250)
T ss_pred HHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCC
Confidence 333446777777888999765221111000 00024567777 1 134578999999999776543
No 87
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=26.97 E-value=39 Score=30.25 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.7
Q ss_pred HHHHhCCCEEEeeccCcccc
Q 018136 165 LLEKLKPSYWFSAHLHCKFA 184 (360)
Q Consensus 165 Ll~~LkPRYhFsgHlH~~f~ 184 (360)
++.+.+|.+.||||.|-...
T Consensus 129 ~~~~~~~~~~lsGH~H~~~~ 148 (171)
T cd07384 129 LLDTIKPVLILSGHDHDQCE 148 (171)
T ss_pred HHhccCceEEEeCcccCCeE
Confidence 66778999999999997743
No 88
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=26.60 E-value=6.9e+02 Score=26.83 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=17.4
Q ss_pred HHHHHHHHHh-CCCEEEeeccCcccc
Q 018136 160 EPAAQLLEKL-KPSYWFSAHLHCKFA 184 (360)
Q Consensus 160 ~~i~~Ll~~L-kPRYhFsgHlH~~f~ 184 (360)
..+.++++.. +-+.||+||.|....
T Consensus 369 ~eLldLL~~ypnV~aVfsGHvH~n~i 394 (496)
T TIGR03767 369 TELVSLLLEHPNVLAWVNGHTHSNKI 394 (496)
T ss_pred HHHHHHHhcCCCceEEEECCcCCCcc
Confidence 4455666655 567899999997653
No 89
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=26.32 E-value=36 Score=27.79 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=28.7
Q ss_pred cccccCcccccccc------HH---HHHcCCCCCCccEEEEcCCCCCc-hhHHHHhcCCcccC
Q 018136 2 ESLNVPRKYREMKS------FW---KYYSGQEVAPIPTIFIGGNHEAS-NYLWELYYGGWAAP 54 (360)
Q Consensus 2 ~~~~~P~ky~~lgd------F~---~Y~sG~~kaPvpTyFIgGNHE~s-~~l~el~~GG~vap 54 (360)
+.+.+|.++..+.. +. ..++|... +|++||+|.|--- +.+.++...|.+.+
T Consensus 29 ~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~t--vP~Vfi~g~~iGG~ddl~~l~~~G~L~~ 89 (99)
T TIGR02189 29 LTLGVNPAVHEIDKEPAGKDIENALSRLGCSPA--VPAVFVGGKLVGGLENVMALHISGSLVP 89 (99)
T ss_pred HHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCC--cCeEEECCEEEcCHHHHHHHHHcCCHHH
Confidence 34455555555531 22 23346555 6778999987543 55666666665543
No 90
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=25.01 E-value=15 Score=26.50 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=10.2
Q ss_pred CCCccEEEEcCCC
Q 018136 25 VAPIPTIFIGGNH 37 (360)
Q Consensus 25 kaPvpTyFIgGNH 37 (360)
...+|++||+|+|
T Consensus 47 ~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 47 VRTVPQVFIDGKF 59 (60)
T ss_dssp SSSSSEEEETTEE
T ss_pred CCccCEEEECCEE
Confidence 4558899999975
No 91
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=24.79 E-value=45 Score=29.32 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=12.0
Q ss_pred CccEEEEcCCCCCc
Q 018136 27 PIPTIFIGGNHEAS 40 (360)
Q Consensus 27 PvpTyFIgGNHE~s 40 (360)
.+|+|+|.|||+..
T Consensus 76 ~~~i~~v~GNHD~~ 89 (156)
T cd08165 76 DLPLHVVVGNHDIG 89 (156)
T ss_pred CCeEEEEcCCCCcC
Confidence 58999999999853
No 92
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=24.04 E-value=50 Score=29.18 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=13.9
Q ss_pred CCCCccEEEEcCCCCCc
Q 018136 24 EVAPIPTIFIGGNHEAS 40 (360)
Q Consensus 24 ~kaPvpTyFIgGNHE~s 40 (360)
....+++++|.|||+..
T Consensus 72 ~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 72 LAKDVDVILIRGNHDGG 88 (172)
T ss_pred ccCCCeEEEEcccCccc
Confidence 34678999999999864
No 93
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=23.18 E-value=44 Score=32.03 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=26.4
Q ss_pred CCccEEEEcCCCCCch------hHHHHhcCCcccCcEEEeCCCcE-EEECC--eEEEEEc
Q 018136 26 APIPTIFIGGNHEASN------YLWELYYGGWAAPNIYFLGFAGV-VKFGN--IRIGGLS 76 (360)
Q Consensus 26 aPvpTyFIgGNHE~s~------~l~el~~GG~vapNIyyLG~~Gv-v~~~G--LRIagLS 76 (360)
.+.|+|+|.||||-.. .+.+... ..++..|....+ ++.+| +.|+|+.
T Consensus 111 ~~~pv~~V~GNHD~~~~~~~~~~~~~~l~----~~gi~lL~n~~~~i~~~~~~i~i~G~~ 166 (271)
T PRK11340 111 ECAPTFACFGNHDRPVGTEKNHLIGETLK----SAGITVLFNQATVIATPNRQFELVGTG 166 (271)
T ss_pred hcCCEEEecCCCCcccCccchHHHHHHHH----hcCcEEeeCCeEEEeeCCcEEEEEEec
Confidence 3578999999999531 1222111 135666755433 24443 6677774
No 94
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=20.09 E-value=1.7e+02 Score=27.22 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHhCCCEEEeeccCccccceeccCCCCCeeEEEEeccCCCCCCeeEEeeccCCCC
Q 018136 167 EKLKPSYWFSAHLHCKFAAVVQHGEDSPVTKFLALDKCLPRRKFLQVFEIESGQG 221 (360)
Q Consensus 167 ~~LkPRYhFsgHlH~~f~a~~~~~~~~~~TRFlaLdk~~~~rk~l~a~~i~~~~~ 221 (360)
..-.|.+.|+||.|..+...+ + .+++++.+.+-.+-.|=--|.|.+..+
T Consensus 188 ~~~~p~vii~Gh~h~~~~~~~-~-----~~~~vn~Gsf~~~~~~~~~~~~~~~~~ 236 (243)
T cd07386 188 IDEVPDILHTGHVHVYGVGVY-R-----GVLLVNSGTWQSQTEFQKKMNINPTPG 236 (243)
T ss_pred ecCCCCEEEECCCCchHhEEE-C-----CEEEEECCCCcCCCCcceeeccCCCcc
Confidence 345799999999988655433 2 499999999887777777777765443
Done!