Query 018137
Match_columns 360
No_of_seqs 173 out of 1480
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1575 Voltage-gated shaker-l 100.0 7.5E-69 1.6E-73 490.7 31.6 322 30-359 9-334 (336)
2 COG0667 Tas Predicted oxidored 100.0 2.6E-68 5.6E-73 497.1 33.6 306 33-353 1-312 (316)
3 TIGR01293 Kv_beta voltage-depe 100.0 2.1E-65 4.5E-70 481.0 34.0 313 35-348 1-316 (317)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 1.8E-63 3.8E-68 472.7 34.5 316 31-351 11-334 (346)
5 PRK10625 tas putative aldo-ket 100.0 1.5E-62 3.2E-67 467.0 35.1 311 33-351 1-340 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 2.5E-61 5.4E-66 433.6 26.9 261 33-352 3-266 (280)
7 PLN02587 L-galactose dehydroge 100.0 1.1E-59 2.3E-64 441.9 33.4 294 35-352 1-302 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 7.4E-57 1.6E-61 417.6 32.0 283 35-347 1-284 (285)
9 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.3E-57 7.2E-62 419.5 25.4 281 47-349 1-282 (283)
10 PRK10376 putative oxidoreducta 100.0 8.2E-55 1.8E-59 404.0 30.7 273 33-351 5-289 (290)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4.6E-55 1E-59 401.1 27.6 251 43-351 1-253 (267)
12 KOG1577 Aldo/keto reductase fa 100.0 2.5E-55 5.3E-60 394.6 24.6 262 35-352 6-287 (300)
13 COG4989 Predicted oxidoreducta 100.0 2E-54 4.3E-59 372.4 23.4 287 33-350 1-293 (298)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.1E-53 2.3E-58 393.3 28.1 257 35-351 6-263 (275)
15 PRK14863 bifunctional regulato 100.0 8.1E-54 1.8E-58 396.8 24.2 266 42-347 2-279 (292)
16 COG1453 Predicted oxidoreducta 100.0 5.5E-50 1.2E-54 363.4 24.8 272 33-350 1-285 (391)
17 KOG1576 Predicted oxidoreducta 100.0 1.6E-48 3.4E-53 338.3 24.6 285 29-339 18-310 (342)
18 KOG3023 Glutamate-cysteine lig 98.0 1.2E-05 2.5E-10 70.2 6.5 73 162-240 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 88.3 22 0.00048 33.2 15.2 155 61-245 134-291 (316)
20 PF00682 HMGL-like: HMGL-like 87.9 16 0.00034 32.5 13.0 171 56-245 7-195 (237)
21 PRK08609 hypothetical protein; 87.5 22 0.00049 36.3 15.2 154 65-237 351-522 (570)
22 PRK07945 hypothetical protein; 83.9 14 0.0003 35.1 10.9 158 63-237 111-288 (335)
23 COG1748 LYS9 Saccharopine dehy 83.7 6.6 0.00014 37.9 8.7 82 62-159 78-159 (389)
24 PRK10558 alpha-dehydro-beta-de 83.5 11 0.00024 34.2 9.8 106 169-334 10-116 (256)
25 PF07021 MetW: Methionine bios 81.3 8.1 0.00018 33.4 7.5 105 136-246 64-172 (193)
26 PRK13361 molybdenum cofactor b 80.8 51 0.0011 31.1 13.9 123 59-203 44-184 (329)
27 COG0159 TrpA Tryptophan syntha 78.9 52 0.0011 30.0 16.3 19 223-241 137-155 (265)
28 cd07943 DRE_TIM_HOA 4-hydroxy- 77.9 54 0.0012 29.7 17.3 126 56-202 15-154 (263)
29 TIGR03239 GarL 2-dehydro-3-deo 77.9 20 0.00043 32.4 9.4 104 171-334 5-109 (249)
30 PRK10128 2-keto-3-deoxy-L-rham 77.8 25 0.00053 32.3 10.0 106 169-334 9-115 (267)
31 TIGR02370 pyl_corrinoid methyl 76.1 34 0.00073 29.7 10.1 148 60-234 9-164 (197)
32 PLN02428 lipoic acid synthase 75.9 68 0.0015 30.6 12.6 165 59-244 129-325 (349)
33 PRK07535 methyltetrahydrofolat 74.9 60 0.0013 29.6 11.7 106 128-245 23-128 (261)
34 cd02070 corrinoid_protein_B12- 72.7 63 0.0014 28.0 11.7 147 60-233 8-161 (201)
35 COG2089 SpsE Sialic acid synth 72.7 86 0.0019 29.5 12.4 121 59-198 86-226 (347)
36 PRK00164 moaA molybdenum cofac 72.3 86 0.0019 29.4 13.7 153 59-236 48-226 (331)
37 PRK08392 hypothetical protein; 72.1 68 0.0015 28.1 14.9 154 64-238 15-179 (215)
38 cd03316 MR_like Mandelate race 71.4 94 0.002 29.4 16.0 154 61-241 139-299 (357)
39 PRK06740 histidinol-phosphatas 71.3 86 0.0019 29.6 12.3 102 134-238 156-289 (331)
40 PF03102 NeuB: NeuB family; I 71.2 12 0.00026 33.7 6.2 118 59-197 52-191 (241)
41 cd00423 Pterin_binding Pterin 70.8 59 0.0013 29.5 10.8 104 127-243 21-130 (258)
42 cd07948 DRE_TIM_HCS Saccharomy 67.2 1E+02 0.0022 28.1 14.7 128 56-202 15-154 (262)
43 cd00739 DHPS DHPS subgroup of 66.7 91 0.002 28.3 11.0 102 127-241 21-128 (257)
44 TIGR00126 deoC deoxyribose-pho 66.4 61 0.0013 28.6 9.5 75 59-148 128-206 (211)
45 cd03174 DRE_TIM_metallolyase D 66.0 47 0.001 29.9 9.1 106 127-240 16-135 (265)
46 COG2102 Predicted ATPases of P 64.4 17 0.00037 32.1 5.5 104 161-298 74-177 (223)
47 cd03315 MLE_like Muconate lact 63.6 1.1E+02 0.0025 27.5 16.0 157 61-245 85-243 (265)
48 TIGR03822 AblA_like_2 lysine-2 63.3 1.3E+02 0.0029 28.2 15.2 127 60-203 119-259 (321)
49 PRK13352 thiamine biosynthesis 63.0 1.6E+02 0.0034 28.8 12.1 149 59-238 73-224 (431)
50 PRK12928 lipoyl synthase; Prov 62.4 1.2E+02 0.0025 28.2 11.0 81 160-244 185-282 (290)
51 PLN02389 biotin synthase 62.3 1.5E+02 0.0034 28.6 14.5 123 60-200 116-253 (379)
52 TIGR02666 moaA molybdenum cofa 62.2 1.4E+02 0.003 28.0 13.7 123 59-203 42-183 (334)
53 TIGR00216 ispH_lytB (E)-4-hydr 61.7 59 0.0013 30.0 8.8 43 285-328 225-273 (280)
54 TIGR00190 thiC thiamine biosyn 61.3 1.6E+02 0.0036 28.5 12.1 146 59-238 73-221 (423)
55 PRK05692 hydroxymethylglutaryl 60.8 76 0.0016 29.4 9.5 105 127-238 23-138 (287)
56 PRK06361 hypothetical protein; 60.1 1.2E+02 0.0025 26.4 14.9 186 64-305 11-201 (212)
57 PRK00507 deoxyribose-phosphate 59.1 51 0.0011 29.2 7.7 77 59-147 132-209 (221)
58 cd00740 MeTr MeTr subgroup of 59.0 1.4E+02 0.003 27.0 12.3 109 127-245 23-131 (252)
59 PRK09490 metH B12-dependent me 58.7 2.7E+02 0.0057 31.6 14.5 94 142-245 395-492 (1229)
60 PRK13958 N-(5'-phosphoribosyl) 58.5 27 0.00057 30.7 5.8 68 139-214 16-84 (207)
61 PRK10550 tRNA-dihydrouridine s 58.3 1.3E+02 0.0029 28.1 10.8 125 61-196 73-214 (312)
62 cd00308 enolase_like Enolase-s 57.9 86 0.0019 27.6 9.2 88 148-245 120-208 (229)
63 TIGR00381 cdhD CO dehydrogenas 57.0 1.2E+02 0.0027 29.2 10.2 107 130-247 128-254 (389)
64 TIGR02311 HpaI 2,4-dihydroxyhe 57.0 1.1E+02 0.0023 27.7 9.6 104 169-333 3-108 (249)
65 TIGR03569 NeuB_NnaB N-acetylne 55.9 1.7E+02 0.0037 27.7 11.0 115 59-193 72-209 (329)
66 PRK13796 GTPase YqeH; Provisio 55.6 2E+02 0.0042 27.6 13.0 125 59-195 53-180 (365)
67 PRK14461 ribosomal RNA large s 55.3 1E+02 0.0022 29.7 9.4 95 151-245 232-353 (371)
68 PRK05283 deoxyribose-phosphate 55.1 1.2E+02 0.0026 27.6 9.4 81 59-149 142-227 (257)
69 TIGR01278 DPOR_BchB light-inde 54.4 2.3E+02 0.0051 28.5 12.5 99 92-202 70-188 (511)
70 COG0135 TrpF Phosphoribosylant 54.4 61 0.0013 28.5 7.3 82 140-237 18-102 (208)
71 PRK08195 4-hyroxy-2-oxovalerat 52.0 2.2E+02 0.0047 27.1 18.3 28 56-83 18-45 (337)
72 TIGR03217 4OH_2_O_val_ald 4-hy 50.0 2.3E+02 0.005 26.8 18.4 45 57-101 18-73 (333)
73 TIGR00126 deoC deoxyribose-pho 49.6 1.8E+02 0.004 25.5 16.6 139 58-215 13-157 (211)
74 PRK14459 ribosomal RNA large s 49.4 1.9E+02 0.0041 27.9 10.4 96 150-245 241-360 (373)
75 TIGR03586 PseI pseudaminic aci 49.3 2.2E+02 0.0048 26.9 10.6 130 59-215 73-225 (327)
76 TIGR01502 B_methylAsp_ase meth 49.2 1.2E+02 0.0026 29.6 9.1 88 148-242 264-357 (408)
77 PRK14462 ribosomal RNA large s 48.8 1.9E+02 0.0042 27.7 10.3 91 152-245 225-339 (356)
78 PF02401 LYTB: LytB protein; 48.3 69 0.0015 29.6 7.0 112 176-328 155-274 (281)
79 COG4464 CapC Capsular polysacc 48.2 77 0.0017 28.0 6.7 45 57-101 14-61 (254)
80 PRK01222 N-(5'-phosphoribosyl) 48.1 39 0.00084 29.7 5.1 67 140-214 19-86 (210)
81 PRK09058 coproporphyrinogen II 48.0 1.3E+02 0.0029 29.7 9.5 29 126-155 226-254 (449)
82 PRK04452 acetyl-CoA decarbonyl 48.0 2.4E+02 0.0053 26.5 12.0 95 140-243 85-185 (319)
83 COG1149 MinD superfamily P-loo 47.6 44 0.00094 30.6 5.4 96 139-245 155-251 (284)
84 cd07937 DRE_TIM_PC_TC_5S Pyruv 47.6 2.2E+02 0.0049 26.0 16.7 134 58-202 16-162 (275)
85 KOG0369 Pyruvate carboxylase [ 47.4 1.8E+02 0.0039 30.3 10.0 151 63-245 43-196 (1176)
86 PRK01045 ispH 4-hydroxy-3-meth 46.8 1.5E+02 0.0033 27.6 9.0 42 285-327 227-274 (298)
87 cd07939 DRE_TIM_NifV Streptomy 46.3 2.2E+02 0.0049 25.6 16.3 42 58-100 15-57 (259)
88 COG1387 HIS2 Histidinol phosph 45.4 1.5E+02 0.0032 26.6 8.5 160 65-238 18-191 (237)
89 PRK14460 ribosomal RNA large s 44.9 2.5E+02 0.0054 26.9 10.5 168 57-245 127-333 (354)
90 CHL00076 chlB photochlorophyll 44.6 3.5E+02 0.0076 27.3 13.0 55 148-202 117-193 (513)
91 PRK09613 thiH thiamine biosynt 44.6 2.2E+02 0.0047 28.5 10.2 175 60-241 28-240 (469)
92 COG4130 Predicted sugar epimer 44.4 1.1E+02 0.0024 27.0 7.1 63 212-296 73-137 (272)
93 KOG0023 Alcohol dehydrogenase, 42.9 36 0.00077 32.0 4.1 146 33-235 174-323 (360)
94 COG3653 N-acyl-D-aspartate/D-g 42.4 3.5E+02 0.0076 26.7 16.5 83 65-158 184-279 (579)
95 PRK12360 4-hydroxy-3-methylbut 42.1 1.9E+02 0.0041 26.7 8.8 43 285-328 226-274 (281)
96 cd03314 MAL Methylaspartate am 41.9 2.4E+02 0.0051 27.2 9.8 87 150-242 229-321 (369)
97 COG0761 lytB 4-Hydroxy-3-methy 41.7 2.9E+02 0.0063 25.6 11.6 44 285-329 229-278 (294)
98 PF11242 DUF2774: Protein of u 41.3 37 0.0008 23.4 3.0 22 285-306 15-36 (63)
99 cd00959 DeoC 2-deoxyribose-5-p 41.0 2.4E+02 0.0052 24.4 16.0 136 60-214 14-155 (203)
100 PF00682 HMGL-like: HMGL-like 40.8 1.2E+02 0.0027 26.7 7.4 103 127-236 11-124 (237)
101 COG0635 HemN Coproporphyrinoge 40.2 2E+02 0.0043 28.2 9.2 60 127-188 201-276 (416)
102 TIGR03821 AblA_like_1 lysine-2 40.2 3.2E+02 0.007 25.7 14.0 131 60-203 125-265 (321)
103 TIGR03699 mena_SCO4550 menaqui 39.7 3.3E+02 0.0071 25.6 12.0 24 60-83 72-95 (340)
104 COG2062 SixA Phosphohistidine 39.7 2.2E+02 0.0048 23.9 8.1 79 93-190 35-113 (163)
105 TIGR02026 BchE magnesium-proto 39.5 4.1E+02 0.0088 26.6 11.6 77 161-240 223-304 (497)
106 PRK14463 ribosomal RNA large s 39.4 2.9E+02 0.0064 26.3 10.0 91 151-244 211-325 (349)
107 cd03174 DRE_TIM_metallolyase D 39.3 2.8E+02 0.006 24.7 22.1 128 56-202 12-159 (265)
108 cd07944 DRE_TIM_HOA_like 4-hyd 39.1 3E+02 0.0065 25.0 16.2 126 57-202 14-151 (266)
109 PRK06294 coproporphyrinogen II 38.9 1.6E+02 0.0034 28.3 8.2 27 127-154 167-193 (370)
110 PLN02746 hydroxymethylglutaryl 38.9 3E+02 0.0065 26.3 9.8 106 127-239 65-181 (347)
111 PRK00730 rnpA ribonuclease P; 38.8 1.7E+02 0.0036 24.0 7.0 63 105-175 46-110 (138)
112 cd03318 MLE Muconate Lactonizi 38.1 1.3E+02 0.0028 28.7 7.5 87 149-245 215-302 (365)
113 TIGR01430 aden_deam adenosine 37.6 3.4E+02 0.0074 25.2 16.4 156 65-243 74-242 (324)
114 TIGR02082 metH 5-methyltetrahy 37.4 6.4E+02 0.014 28.5 13.4 96 141-245 378-476 (1178)
115 PRK11194 ribosomal RNA large s 37.0 3.4E+02 0.0074 26.2 10.0 90 152-244 221-337 (372)
116 PF07994 NAD_binding_5: Myo-in 36.9 3.5E+02 0.0076 25.2 10.1 151 129-330 131-289 (295)
117 PRK05692 hydroxymethylglutaryl 36.8 3.4E+02 0.0074 25.0 17.2 178 55-242 18-233 (287)
118 cd00885 cinA Competence-damage 36.7 83 0.0018 26.6 5.3 64 63-134 19-82 (170)
119 PF02679 ComA: (2R)-phospho-3- 36.7 53 0.0011 29.6 4.2 101 134-238 25-131 (244)
120 PRK05985 cytosine deaminase; P 36.7 3.9E+02 0.0084 25.6 13.7 170 63-245 98-277 (391)
121 COG1751 Uncharacterized conser 35.9 1.4E+02 0.0029 24.9 6.0 75 60-146 11-85 (186)
122 TIGR01862 N2-ase-Ialpha nitrog 35.7 4.1E+02 0.0089 26.2 10.7 105 84-203 97-218 (443)
123 TIGR00048 radical SAM enzyme, 35.7 2.4E+02 0.0053 26.9 8.8 92 151-245 219-334 (355)
124 TIGR03849 arch_ComA phosphosul 35.7 2.3E+02 0.0049 25.5 8.0 101 134-238 12-118 (237)
125 TIGR02534 mucon_cyclo muconate 35.5 1.8E+02 0.004 27.7 8.1 88 148-245 213-301 (368)
126 PRK09061 D-glutamate deacylase 35.5 4.7E+02 0.01 26.3 11.3 115 65-187 171-286 (509)
127 cd01965 Nitrogenase_MoFe_beta_ 35.5 4.3E+02 0.0094 25.8 13.7 108 84-202 61-182 (428)
128 cd00959 DeoC 2-deoxyribose-5-p 35.4 2.9E+02 0.0064 23.8 9.1 72 60-146 128-203 (203)
129 PLN02746 hydroxymethylglutaryl 35.3 4E+02 0.0088 25.4 15.9 142 54-199 59-236 (347)
130 PRK07379 coproporphyrinogen II 35.3 2.1E+02 0.0046 27.7 8.6 60 126-187 178-254 (400)
131 PRK03670 competence damage-ind 35.0 1.1E+02 0.0023 27.8 5.9 67 63-136 20-86 (252)
132 PRK14466 ribosomal RNA large s 34.9 3.5E+02 0.0076 25.8 9.6 93 150-245 210-326 (345)
133 PTZ00081 enolase; Provisional 34.8 3.8E+02 0.0083 26.5 10.2 132 92-239 231-382 (439)
134 PRK05660 HemN family oxidoredu 34.8 2.4E+02 0.0053 27.1 8.8 61 126-188 170-243 (378)
135 PRK14464 ribosomal RNA large s 34.5 4.2E+02 0.009 25.3 12.6 83 160-245 223-318 (344)
136 cd00405 PRAI Phosphoribosylant 34.1 2.5E+02 0.0053 24.2 8.0 40 147-190 73-112 (203)
137 PRK00912 ribonuclease P protei 33.9 3.4E+02 0.0073 24.0 9.1 146 62-239 15-173 (237)
138 PRK09856 fructoselysine 3-epim 33.9 2.4E+02 0.0052 25.3 8.3 60 181-244 3-71 (275)
139 COG3623 SgaU Putative L-xylulo 33.8 63 0.0014 28.9 4.1 77 39-115 64-155 (287)
140 COG1121 ZnuC ABC-type Mn/Zn tr 33.7 1.5E+02 0.0033 26.9 6.7 64 127-193 112-204 (254)
141 PRK12570 N-acetylmuramic acid- 33.6 3.1E+02 0.0067 25.5 9.0 120 64-193 46-170 (296)
142 COG1140 NarY Nitrate reductase 33.2 17 0.00036 34.7 0.5 28 172-199 260-287 (513)
143 TIGR01428 HAD_type_II 2-haloal 33.2 87 0.0019 26.6 5.0 63 133-197 62-128 (198)
144 PRK05628 coproporphyrinogen II 33.2 2.4E+02 0.0053 27.0 8.5 27 127-154 172-198 (375)
145 PRK13347 coproporphyrinogen II 33.0 3.2E+02 0.007 27.0 9.6 26 127-153 216-241 (453)
146 COG1801 Uncharacterized conser 33.0 3.8E+02 0.0083 24.4 10.8 106 47-160 4-116 (263)
147 PRK14456 ribosomal RNA large s 32.9 2.4E+02 0.0053 27.1 8.3 91 151-244 238-353 (368)
148 cd04740 DHOD_1B_like Dihydroor 32.9 3.9E+02 0.0084 24.5 12.4 154 61-234 100-286 (296)
149 PLN02681 proline dehydrogenase 32.7 5.1E+02 0.011 25.8 13.2 165 65-244 222-413 (455)
150 TIGR01928 menC_lowGC/arch o-su 32.4 4.2E+02 0.0092 24.7 15.4 154 61-245 132-286 (324)
151 PRK05588 histidinol-phosphatas 32.3 3.7E+02 0.008 24.0 14.6 159 63-239 16-215 (255)
152 cd03323 D-glucarate_dehydratas 32.3 2.2E+02 0.0047 27.7 8.0 152 61-244 168-323 (395)
153 PRK09856 fructoselysine 3-epim 32.0 3.7E+02 0.0081 24.0 11.9 50 224-295 94-143 (275)
154 cd03321 mandelate_racemase Man 31.9 4.5E+02 0.0098 24.9 13.7 152 62-239 142-294 (355)
155 COG3172 NadR Predicted ATPase/ 31.8 3E+02 0.0065 23.4 7.5 96 74-176 78-185 (187)
156 COG5310 Homospermidine synthas 31.7 3.9E+02 0.0084 25.4 8.9 141 67-237 51-210 (481)
157 cd08319 Death_RAIDD Death doma 31.6 57 0.0012 24.1 3.0 70 130-210 10-80 (83)
158 COG4943 Predicted signal trans 31.6 4.1E+02 0.0088 26.7 9.5 78 92-181 341-419 (524)
159 PRK09249 coproporphyrinogen II 31.5 1.6E+02 0.0035 29.1 7.2 17 233-249 316-332 (453)
160 COG0279 GmhA Phosphoheptose is 31.0 3.3E+02 0.0072 23.1 9.0 123 63-195 28-154 (176)
161 COG0502 BioB Biotin synthase a 30.7 4.8E+02 0.01 24.8 11.1 137 60-220 84-235 (335)
162 TIGR02668 moaA_archaeal probab 30.6 4.3E+02 0.0092 24.2 13.7 121 59-202 39-177 (302)
163 cd01966 Nitrogenase_NifN_1 Nit 30.3 4.3E+02 0.0093 25.8 9.8 109 84-203 61-185 (417)
164 cd08190 HOT Hydroxyacid-oxoaci 30.0 5.3E+02 0.011 25.1 10.7 96 86-197 6-101 (414)
165 TIGR03471 HpnJ hopanoid biosyn 29.9 5.6E+02 0.012 25.4 12.2 68 161-234 321-392 (472)
166 PRK09358 adenosine deaminase; 29.8 4.7E+02 0.01 24.5 15.7 105 128-243 147-252 (340)
167 PF01118 Semialdhyde_dh: Semia 29.8 73 0.0016 24.9 3.6 29 60-88 74-102 (121)
168 cd02069 methionine_synthase_B1 29.7 3.9E+02 0.0084 23.4 9.9 148 60-234 12-168 (213)
169 PRK15072 bifunctional D-altron 29.5 4.2E+02 0.0091 25.7 9.5 85 148-242 232-317 (404)
170 PRK14455 ribosomal RNA large s 29.4 3.1E+02 0.0068 26.2 8.5 91 151-244 223-337 (356)
171 TIGR01496 DHPS dihydropteroate 29.3 4.3E+02 0.0094 23.9 12.5 99 127-240 20-125 (257)
172 PRK00087 4-hydroxy-3-methylbut 29.1 2.9E+02 0.0062 28.8 8.7 47 285-332 223-276 (647)
173 TIGR02026 BchE magnesium-proto 29.0 6E+02 0.013 25.4 12.2 68 160-233 320-391 (497)
174 PRK00077 eno enolase; Provisio 28.9 5.6E+02 0.012 25.1 11.0 130 93-238 220-361 (425)
175 PF01904 DUF72: Protein of unk 28.7 2.2E+02 0.0048 25.2 6.9 93 77-174 19-112 (230)
176 PRK07259 dihydroorotate dehydr 28.7 4.6E+02 0.01 24.1 11.1 124 61-196 102-254 (301)
177 PRK14017 galactonate dehydrata 28.7 4.2E+02 0.009 25.4 9.3 85 148-242 203-288 (382)
178 COG2159 Predicted metal-depend 28.7 3.5E+02 0.0077 25.0 8.5 99 140-243 55-167 (293)
179 cd01320 ADA Adenosine deaminas 28.7 3.6E+02 0.0077 25.0 8.7 111 127-239 66-192 (325)
180 cd01981 Pchlide_reductase_B Pc 28.4 5.6E+02 0.012 25.0 12.1 86 106-202 86-192 (430)
181 PF13378 MR_MLE_C: Enolase C-t 28.2 84 0.0018 24.0 3.7 55 184-245 3-57 (111)
182 KOG1549 Cysteine desulfurase N 28.2 3.2E+02 0.007 26.8 8.2 11 91-101 90-100 (428)
183 smart00642 Aamy Alpha-amylase 28.1 90 0.0019 26.2 4.1 21 223-243 73-93 (166)
184 PRK08446 coproporphyrinogen II 28.1 5.2E+02 0.011 24.5 9.9 104 45-186 109-229 (350)
185 PRK15454 ethanol dehydrogenase 28.1 4.9E+02 0.011 25.2 9.7 98 85-198 31-128 (395)
186 cd00945 Aldolase_Class_I Class 27.8 3.6E+02 0.0078 22.5 12.6 73 61-150 11-84 (201)
187 TIGR00538 hemN oxygen-independ 27.7 3.7E+02 0.0081 26.5 9.0 61 127-189 215-291 (455)
188 TIGR01927 menC_gamma/gm+ o-suc 27.6 5E+02 0.011 24.1 11.2 87 148-246 183-270 (307)
189 PRK13803 bifunctional phosphor 27.5 2.8E+02 0.0061 28.7 8.3 77 127-214 11-88 (610)
190 PRK14476 nitrogenase molybdenu 27.3 4E+02 0.0086 26.4 9.0 108 84-202 72-195 (455)
191 PLN00191 enolase 27.2 5.1E+02 0.011 25.8 9.6 133 91-239 245-394 (457)
192 COG0145 HyuA N-methylhydantoin 27.2 7.3E+02 0.016 26.1 11.2 99 59-161 135-246 (674)
193 PRK14457 ribosomal RNA large s 27.1 5.5E+02 0.012 24.4 17.1 168 59-244 128-330 (345)
194 cd08192 Fe-ADH7 Iron-containin 26.9 5.6E+02 0.012 24.4 10.0 97 86-198 7-103 (370)
195 cd01974 Nitrogenase_MoFe_beta 26.7 6.2E+02 0.013 24.8 11.2 110 82-202 63-187 (435)
196 COG0673 MviM Predicted dehydro 26.7 1.9E+02 0.0042 26.8 6.6 68 285-352 42-117 (342)
197 TIGR03597 GTPase_YqeH ribosome 26.6 5.7E+02 0.012 24.4 10.2 125 59-195 47-174 (360)
198 PRK11865 pyruvate ferredoxin o 26.6 5.3E+02 0.012 24.0 10.4 150 34-199 127-289 (299)
199 KOG0059 Lipid exporter ABCA1 a 26.5 2.8E+02 0.0061 30.2 8.4 70 126-197 669-767 (885)
200 TIGR03822 AblA_like_2 lysine-2 26.5 5.4E+02 0.012 24.1 11.1 111 128-245 120-239 (321)
201 cd07944 DRE_TIM_HOA_like 4-hyd 26.3 3.8E+02 0.0083 24.3 8.2 30 126-156 16-45 (266)
202 COG2355 Zn-dependent dipeptida 26.3 5.5E+02 0.012 24.1 10.3 106 63-184 149-259 (313)
203 KOG4175 Tryptophan synthase al 26.2 4.5E+02 0.0098 23.1 10.5 22 312-333 210-231 (268)
204 cd07943 DRE_TIM_HOA 4-hydroxy- 26.1 3.4E+02 0.0073 24.5 7.8 104 127-239 19-131 (263)
205 cd03313 enolase Enolase: Enola 25.8 6.3E+02 0.014 24.6 10.4 131 93-238 217-361 (408)
206 PRK07094 biotin synthase; Prov 25.8 5.4E+02 0.012 23.8 11.1 22 60-81 70-91 (323)
207 PF13407 Peripla_BP_4: Peripla 25.8 1.9E+02 0.004 25.4 6.0 69 129-203 13-81 (257)
208 cd03527 RuBisCO_small Ribulose 25.7 3.1E+02 0.0067 21.0 8.7 82 50-155 3-85 (99)
209 PRK07328 histidinol-phosphatas 25.6 5E+02 0.011 23.4 16.0 160 64-237 19-225 (269)
210 PLN02363 phosphoribosylanthran 25.5 2.2E+02 0.0049 25.8 6.4 76 127-214 55-131 (256)
211 cd03322 rpsA The starvation se 25.0 6E+02 0.013 24.1 15.4 148 61-242 126-274 (361)
212 PF01261 AP_endonuc_2: Xylose 24.9 3E+02 0.0065 23.0 7.0 53 223-295 74-126 (213)
213 cd01973 Nitrogenase_VFe_beta_l 24.9 6.9E+02 0.015 24.8 15.4 108 83-202 65-188 (454)
214 PRK12323 DNA polymerase III su 24.8 3.6E+02 0.0079 28.3 8.2 71 127-199 104-176 (700)
215 COG0820 Predicted Fe-S-cluster 24.6 4.5E+02 0.0098 25.1 8.3 89 151-244 216-330 (349)
216 TIGR01861 ANFD nitrogenase iro 24.5 7.5E+02 0.016 25.0 11.2 104 84-202 107-228 (513)
217 PRK00549 competence damage-ind 24.4 1.9E+02 0.0041 28.3 6.1 64 63-134 20-83 (414)
218 PF05049 IIGP: Interferon-indu 24.4 1.3E+02 0.0029 29.0 4.9 81 89-171 127-215 (376)
219 cd04742 NPD_FabD 2-Nitropropan 24.3 3.2E+02 0.0069 26.9 7.5 70 170-241 32-103 (418)
220 cd01297 D-aminoacylase D-amino 24.2 6.1E+02 0.013 24.6 9.7 111 63-185 167-283 (415)
221 PF14606 Lipase_GDSL_3: GDSL-l 24.1 4.1E+02 0.009 22.7 7.3 70 72-154 29-100 (178)
222 PRK09427 bifunctional indole-3 23.9 1.7E+02 0.0037 29.0 5.7 65 140-214 273-338 (454)
223 cd01075 NAD_bind_Leu_Phe_Val_D 23.8 2.1E+02 0.0046 24.7 5.7 71 226-307 125-196 (200)
224 PRK14454 ribosomal RNA large s 23.7 6.4E+02 0.014 24.0 9.7 92 150-244 211-326 (342)
225 KOG0259 Tyrosine aminotransfer 23.7 6.9E+02 0.015 24.4 16.0 188 44-251 62-278 (447)
226 TIGR00238 KamA family protein. 23.7 6.2E+02 0.013 23.8 12.7 125 62-202 144-281 (331)
227 cd07945 DRE_TIM_CMS Leptospira 23.7 5.7E+02 0.012 23.4 16.8 113 127-245 108-228 (280)
228 TIGR01856 hisJ_fam histidinol 23.6 5.3E+02 0.012 23.0 10.7 85 63-157 15-114 (253)
229 PRK03995 hypothetical protein; 23.5 2.7E+02 0.0059 25.5 6.5 66 70-147 198-264 (267)
230 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.3 5.6E+02 0.012 23.3 8.7 24 127-151 18-41 (275)
231 COG4015 Predicted dinucleotide 23.1 3.4E+02 0.0074 22.9 6.3 52 63-115 121-182 (217)
232 PRK09860 putative alcohol dehy 23.1 6.8E+02 0.015 24.1 9.9 97 85-197 13-109 (383)
233 PRK12558 glutamyl-tRNA synthet 23.0 1.6E+02 0.0035 29.1 5.3 60 127-194 48-107 (445)
234 PRK13505 formate--tetrahydrofo 22.9 1.6E+02 0.0035 29.9 5.3 55 189-245 359-413 (557)
235 cd00954 NAL N-Acetylneuraminic 22.9 5.9E+02 0.013 23.3 16.0 114 125-241 16-136 (288)
236 PF00101 RuBisCO_small: Ribulo 22.7 3.5E+02 0.0077 20.7 7.2 82 50-155 2-84 (99)
237 TIGR01060 eno phosphopyruvate 22.4 7.4E+02 0.016 24.3 10.7 97 127-238 262-362 (425)
238 PF00465 Fe-ADH: Iron-containi 22.4 1.6E+02 0.0035 28.1 5.1 97 85-199 5-101 (366)
239 PRK15108 biotin synthase; Prov 22.4 6.7E+02 0.015 23.8 13.0 123 60-199 76-210 (345)
240 PRK07329 hypothetical protein; 22.2 5.6E+02 0.012 22.8 10.3 104 134-240 83-215 (246)
241 PF01619 Pro_dh: Proline dehyd 22.2 1.4E+02 0.003 27.9 4.6 168 63-244 92-284 (313)
242 COG1151 6Fe-6S prismane cluste 22.1 6.1E+02 0.013 25.9 9.0 50 130-182 360-412 (576)
243 TIGR02313 HpaI-NOT-DapA 2,4-di 22.0 6.3E+02 0.014 23.3 11.5 111 125-240 16-134 (294)
244 PRK14468 ribosomal RNA large s 22.0 6.9E+02 0.015 23.7 9.6 92 150-244 206-321 (343)
245 TIGR02109 PQQ_syn_pqqE coenzym 22.0 6.7E+02 0.015 23.6 12.2 122 59-203 36-174 (358)
246 PRK02910 light-independent pro 21.9 8.3E+02 0.018 24.6 12.8 98 92-202 70-188 (519)
247 PF13167 GTP-bdg_N: GTP-bindin 21.9 77 0.0017 24.1 2.2 68 281-350 8-80 (95)
248 PRK13753 dihydropteroate synth 21.7 6.4E+02 0.014 23.3 12.2 102 127-243 22-129 (279)
249 COG1168 MalY Bifunctional PLP- 21.7 7.4E+02 0.016 24.0 10.1 119 62-202 40-191 (388)
250 cd05007 SIS_Etherase N-acetylm 21.5 6.1E+02 0.013 22.9 10.4 122 63-194 36-162 (257)
251 PRK14465 ribosomal RNA large s 21.5 7.1E+02 0.015 23.7 9.2 91 151-244 216-329 (342)
252 TIGR00035 asp_race aspartate r 21.5 3.9E+02 0.0084 23.5 7.1 63 127-190 14-88 (229)
253 cd00950 DHDPS Dihydrodipicolin 21.4 6.2E+02 0.013 23.0 9.8 108 125-241 16-134 (284)
254 COG4152 ABC-type uncharacteriz 21.3 6.5E+02 0.014 23.1 8.2 70 126-197 101-199 (300)
255 PF10171 DUF2366: Uncharacteri 21.2 1.8E+02 0.0038 24.8 4.5 46 135-183 68-113 (173)
256 PRK05283 deoxyribose-phosphate 21.2 6.3E+02 0.014 23.0 9.8 102 59-173 22-125 (257)
257 COG0274 DeoC Deoxyribose-phosp 21.1 6E+02 0.013 22.7 8.6 77 59-147 136-213 (228)
258 PRK09485 mmuM homocysteine met 21.0 6.7E+02 0.015 23.2 13.5 171 61-239 44-246 (304)
259 COG1831 Predicted metal-depend 20.9 5.3E+02 0.011 23.7 7.6 134 90-234 20-185 (285)
260 COG0218 Predicted GTPase [Gene 20.8 5.7E+02 0.012 22.3 10.7 113 48-175 78-198 (200)
261 cd08590 PI-PLCc_Rv2075c_like C 20.8 4.7E+02 0.01 23.9 7.5 17 165-181 151-167 (267)
262 PRK05441 murQ N-acetylmuramic 20.8 5.4E+02 0.012 23.9 8.1 119 66-193 52-174 (299)
263 PF11020 DUF2610: Domain of un 20.6 2.5E+02 0.0054 20.5 4.4 29 277-306 48-76 (82)
264 PF15221 LEP503: Lens epitheli 20.5 47 0.001 22.2 0.7 21 33-53 15-35 (61)
265 PRK14477 bifunctional nitrogen 20.5 8.2E+02 0.018 26.8 10.4 109 84-203 551-672 (917)
266 cd03320 OSBS o-Succinylbenzoat 20.5 4.6E+02 0.0099 23.6 7.5 87 148-245 153-239 (263)
267 cd07942 DRE_TIM_LeuA Mycobacte 20.4 6.8E+02 0.015 23.1 12.8 45 55-100 15-60 (284)
268 TIGR01761 thiaz-red thiazoliny 20.1 2.7E+02 0.0058 26.5 6.0 64 284-352 39-114 (343)
269 PRK01215 competence damage-ind 20.1 2.7E+02 0.0059 25.4 5.8 50 63-117 23-72 (264)
270 TIGR02764 spore_ybaN_pdaB poly 20.1 5.3E+02 0.012 21.7 9.7 46 127-177 136-182 (191)
No 1
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=7.5e-69 Score=490.73 Aligned_cols=322 Identities=42% Similarity=0.709 Sum_probs=287.1
Q ss_pred ccCCceeecCCCCcccCcccccc--ccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCC
Q 018137 30 NYKMQYKHLGRSGLRVSQLSYGA--WVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRS 107 (360)
Q Consensus 30 ~~~m~~r~lg~tg~~vs~lglG~--~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~ 107 (360)
...|.++++|++|++||+||||| |..++...+++++++++++|+|+|+|+||||++||+|.||+++|+|+++++.+|+
T Consensus 9 ~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~ 88 (336)
T KOG1575|consen 9 ELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD 88 (336)
T ss_pred hhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC
Confidence 34599999999999999999999 4556666899999999999999999999999999999999999999999988999
Q ss_pred cEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCC
Q 018137 108 DIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWS 187 (360)
Q Consensus 108 ~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~ 187 (360)
+|+|+||+++....+...+.+...+...++.|++|||++|||+||+||+|+.+++++++++|.+|+++|+|++||+|+++
T Consensus 89 ~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~s 168 (336)
T KOG1575|consen 89 KVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWS 168 (336)
T ss_pred cEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCC
Confidence 99999999876533335678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCC-CCCCC-ccchh
Q 018137 188 AQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGS-IPPDS-RFALE 265 (360)
Q Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~-~p~~~-~~~~~ 265 (360)
.+++.++...++ ++++++|++||++.|..++.+++++|++.||++++|+||++|+|||++.... .|.+. ++...
T Consensus 169 a~~I~~a~~~~~----~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~ 244 (336)
T KOG1575|consen 169 AEEIREAHAVAP----IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFL 244 (336)
T ss_pred HHHHHHHHHhcC----CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccc
Confidence 999999999876 6799999999999999888889999999999999999999999999987652 23321 12222
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHH
Q 018137 266 NYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKI 345 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l 345 (360)
.+..++... ..+...++++.++|+++|+|++|+||+|+++++.+++||||+++++||+||++|+.. .|+++++..|
T Consensus 245 ~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~--~Lt~e~~~~l 320 (336)
T KOG1575|consen 245 GLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSV--KLTPEEIKEL 320 (336)
T ss_pred ccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhc--cCCHHHHHHH
Confidence 222222121 456777899999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHccCCCCCCCC
Q 018137 346 EAAVLSKPKRPESY 359 (360)
Q Consensus 346 ~~~~~~~~~~~~~~ 359 (360)
++..+....++.+|
T Consensus 321 ~~~~~~~~~~~~~~ 334 (336)
T KOG1575|consen 321 EEIIDKILGFGPRS 334 (336)
T ss_pred HHhhccccCcCCCC
Confidence 99999998888776
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2.6e-68 Score=497.10 Aligned_cols=306 Identities=44% Similarity=0.719 Sum_probs=268.3
Q ss_pred CceeecCCCCcccCccccccccccCC---CCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcE
Q 018137 33 MQYKHLGRSGLRVSQLSYGAWVSFGN---QLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDI 109 (360)
Q Consensus 33 m~~r~lg~tg~~vs~lglG~~~~~~~---~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v 109 (360)
|.+|+||++|++||+|||||| .+|+ ..+.+++.++|++|+|+||||||||++||.|.||++||+||+.++. |+++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~-~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~-Rd~v 78 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTM-TLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGR-RDKV 78 (316)
T ss_pred CCceecCCCCceecceeeecc-ccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCC-CCeE
Confidence 789999999999999999999 4553 2444577789999999999999999999999999999999998764 9999
Q ss_pred EEEeccccCC--CCCCC-CCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCC
Q 018137 110 VVSTKIFWGG--QGPND-KGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEW 186 (360)
Q Consensus 110 ~i~tK~~~~~--~~~~~-~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~ 186 (360)
+|+||++... ..++. .+.++++|+++++.||+||||||||+||+||||...+.++++.+|.+|+++|+||+||+||+
T Consensus 79 vIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~ 158 (316)
T COG0667 79 VIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNY 158 (316)
T ss_pred EEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCC
Confidence 9999997543 12332 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhh
Q 018137 187 SAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALEN 266 (360)
Q Consensus 187 ~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~ 266 (360)
+.+++.++.+.+ .+++++|.+||++++.. +.+++++|+++||++++|+||++|+|+|++... +++.+...
T Consensus 159 ~~~~i~~a~~~~-----~~~~~~Q~~ynl~~R~~-e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~--~~~~r~~~-- 228 (316)
T COG0667 159 SAEQIAEALAVA-----APIDSLQPEYNLLERDA-EKELLPLCREEGIGLLAYSPLASGLLTGKYLPG--PEGSRASE-- 228 (316)
T ss_pred CHHHHHHHHHhc-----CCceeecccCccccccc-hhHHHHHHHHcCCeEEEecCccccccCCCcCCC--cchhhccc--
Confidence 999999998875 46899999999999854 667999999999999999999999999999874 33322211
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHHH
Q 018137 267 YKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIE 346 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l~ 346 (360)
...+.....+.....+..++++|+++|+|++|+||+|++++|.|.++|+|+++++||++|+++++. .|++++++.|+
T Consensus 229 -~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~--~L~~~~~~~l~ 305 (316)
T COG0667 229 -LPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDI--KLSEEELAALD 305 (316)
T ss_pred -cccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 112233445677888899999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHccCC
Q 018137 347 AAVLSKP 353 (360)
Q Consensus 347 ~~~~~~~ 353 (360)
+.....+
T Consensus 306 ~~~~~~~ 312 (316)
T COG0667 306 EISAEEP 312 (316)
T ss_pred HHhhhcc
Confidence 8876543
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.1e-65 Score=481.04 Aligned_cols=313 Identities=49% Similarity=0.924 Sum_probs=264.8
Q ss_pred eeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEec
Q 018137 35 YKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTK 114 (360)
Q Consensus 35 ~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK 114 (360)
||+||+||++||+||||||..+|...+.+++.++|+.|+++|||+||||+.||.|.||++||+||++.+.+|++++|+||
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~iaTK 80 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVITTK 80 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEEEee
Confidence 58999999999999999996566667889999999999999999999999999999999999999976557999999999
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHH
Q 018137 115 IFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEA 194 (360)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~ 194 (360)
++++...+...+.+++.++++|++||+||||||||+|++|||++..+++++|++|++|+++||||+||+|||+.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~ 160 (317)
T TIGR01293 81 IFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIMEA 160 (317)
T ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHH
Confidence 85432111123468999999999999999999999999999998888999999999999999999999999999999998
Q ss_pred HHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhh---hhhh
Q 018137 195 WGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENY---KNLA 271 (360)
Q Consensus 195 ~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~---~~~~ 271 (360)
...+...+.++++++|++||++++...+.+++++|+++||++++|+||++|+|+|++... .|.+.+.....+ ...+
T Consensus 161 ~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~~~~~~~~~~~~~~~ 239 (317)
T TIGR01293 161 YSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYSRATLKGYQWLKDKI 239 (317)
T ss_pred HHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcccccccccchhhhhh
Confidence 887777787889999999999998754668999999999999999999999999988553 232221100000 0000
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHHHHH
Q 018137 272 SRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAA 348 (360)
Q Consensus 272 ~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l~~~ 348 (360)
..+......+.++.+.++|+++|+|++|+||+|++++|+|+++|+|+++++||++|+++++...+||+++++.|+++
T Consensus 240 ~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 240 LSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred cchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 11112234566788999999999999999999999999999999999999999999999974127999999999875
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.8e-63 Score=472.71 Aligned_cols=316 Identities=34% Similarity=0.598 Sum_probs=263.1
Q ss_pred cCCceeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCC--ChHHHHHHHHHHhc-CCCCC
Q 018137 31 YKMQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYAN--GRAEEIMGQAIREL-GWKRS 107 (360)
Q Consensus 31 ~~m~~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~--G~sE~~lG~al~~~-~~~R~ 107 (360)
..|+||+||+||++||+||||||..+|...+.+++.++|++|+++|||+||||+.||+ |.||+.||++|++. +..|+
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd 90 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRD 90 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCC
Confidence 4499999999999999999999965665456778899999999999999999999995 89999999999864 23599
Q ss_pred cEEEEeccccCC-CCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCC
Q 018137 108 DIVVSTKIFWGG-QGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEW 186 (360)
Q Consensus 108 ~v~i~tK~~~~~-~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~ 186 (360)
+++|+||++... ..+...+.+++.++++|++||+||||||||+|++|||++..++++++++|++|+++|||++||||||
T Consensus 91 ~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvSn~ 170 (346)
T PRK09912 91 ELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSY 170 (346)
T ss_pred eEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCC
Confidence 999999986321 1111234689999999999999999999999999999988899999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchh-
Q 018137 187 SAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALE- 265 (360)
Q Consensus 187 ~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~- 265 (360)
++++++++.+.+...+ ++++++|++||++++.....+++++|+++||++++|+||++|+|++++... .|.+.++...
T Consensus 171 ~~~~~~~~~~~~~~~~-~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~~~~~~ 248 (346)
T PRK09912 171 SPERTQKMVELLREWK-IPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSRMHREG 248 (346)
T ss_pred CHHHHHHHHHHHHhcC-CCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCccccccc
Confidence 9999998887765554 468899999999998653346999999999999999999999999987543 2322221100
Q ss_pred -hhhhhhcchhh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcc-cCCCCCHHHH
Q 018137 266 -NYKNLASRSLV-DDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAID-VIPLLTPSVM 342 (360)
Q Consensus 266 -~~~~~~~~~~~-~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~-~~~~L~~~e~ 342 (360)
..+ .+.+..+ ....+.++.+.++|+++|+|++|+||+|++++|.|.++|+|+++++||++|++++. + +|+++++
T Consensus 249 ~~~~-~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~--~L~~e~~ 325 (346)
T PRK09912 249 NKVR-GLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNL--TFSTEEL 325 (346)
T ss_pred cchh-hhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCC--CCCHHHH
Confidence 000 0111101 23456678899999999999999999999999999999999999999999999984 6 8999999
Q ss_pred HHHHHHHcc
Q 018137 343 DKIEAAVLS 351 (360)
Q Consensus 343 ~~l~~~~~~ 351 (360)
+.|+++.++
T Consensus 326 ~~l~~~~~~ 334 (346)
T PRK09912 326 AQIDQHIAD 334 (346)
T ss_pred HHHHHhhCc
Confidence 999998755
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.5e-62 Score=467.01 Aligned_cols=311 Identities=30% Similarity=0.438 Sum_probs=262.3
Q ss_pred CceeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCC-------CChHHHHHHHHHHhcCCC
Q 018137 33 MQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYA-------NGRAEEIMGQAIRELGWK 105 (360)
Q Consensus 33 m~~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-------~G~sE~~lG~al~~~~~~ 105 (360)
|+||+||+||++||+|||||| .+|...+.+++.++|+.|+++||||||||+.|| .|.||+.||++|++.+ .
T Consensus 1 m~~r~lg~t~~~vs~iglGt~-~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~-~ 78 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTM-TFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRG-S 78 (346)
T ss_pred CCceecCCCCCccccEeEecc-ccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcC-C
Confidence 789999999999999999999 566566789999999999999999999999998 4899999999998654 6
Q ss_pred CCcEEEEeccccCCC--CC---CCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCC-----------------CCCHH
Q 018137 106 RSDIVVSTKIFWGGQ--GP---NDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDT-----------------STPIE 163 (360)
Q Consensus 106 R~~v~i~tK~~~~~~--~~---~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~-----------------~~~~~ 163 (360)
|++++|+||++.... .+ ...+.+++.++++|++||+||||||||+|+||||+. ..+++
T Consensus 79 R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T PRK10625 79 REKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLL 158 (346)
T ss_pred cceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHH
Confidence 999999999852110 00 112478999999999999999999999999999965 24678
Q ss_pred HHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccc
Q 018137 164 ETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLA 243 (360)
Q Consensus 164 ~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~ 243 (360)
++|++|++|+++|+|++||+|||+.+++.+++..+...+...+.++|++||++++.. +.+++++|+++||++++|+||+
T Consensus 159 e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~-~~~ll~~~~~~gi~via~spL~ 237 (346)
T PRK10625 159 ETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSF-EVGLAEVSQYEGVELLAYSCLA 237 (346)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccc-hhHHHHHHHHcCCeEEEecccc
Confidence 999999999999999999999999999999887776666667889999999999875 5679999999999999999999
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHH
Q 018137 244 SGVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQ 323 (360)
Q Consensus 244 ~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~ 323 (360)
+|+|+|++.....|.+.+.. .+. .+.........+..+.++++|+++|+|++|+||+|++++|.|+++|+|+++++|
T Consensus 238 ~G~Ltg~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~ 314 (346)
T PRK10625 238 FGTLTGKYLNGAKPAGARNT--LFS-RFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQ 314 (346)
T ss_pred CeeccCCCCCCCCCCCcccc--ccc-ccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHH
Confidence 99999987554333321100 000 011111133566678999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCHHHHHHHHHHHcc
Q 018137 324 IQENMKAIDVIPLLTPSVMDKIEAAVLS 351 (360)
Q Consensus 324 l~en~~a~~~~~~L~~~e~~~l~~~~~~ 351 (360)
|++|++++++ +|++++++.|+++...
T Consensus 315 l~en~~a~~~--~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 315 LKTNIESLHL--TLSEEVLAEIEAVHQV 340 (346)
T ss_pred HHHHHhhccC--CCCHHHHHHHHHHHhh
Confidence 9999999998 9999999999998754
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.5e-61 Score=433.59 Aligned_cols=261 Identities=32% Similarity=0.486 Sum_probs=233.2
Q ss_pred CceeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEE
Q 018137 33 MQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVS 112 (360)
Q Consensus 33 m~~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~ 112 (360)
|.+.+| ++|.+||.||||||+..+. +.+.+.+.+|++.|+|+||||..||| |+.+|+++++.+++|+++||+
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~~----~~~~~av~~Al~~Gyr~IDTA~~Ygn---E~~VG~aI~~s~v~ReelFit 74 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGDD----EWAVRAVRAALELGYRLIDTAEIYGN---EEEVGEAIKESGVPREELFIT 74 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCCc----hhHHHHHHHHHHhCcceEecHhHhcC---HHHHHHHHHhcCCCHHHeEEE
Confidence 455677 5667799999999954332 33999999999999999999999986 999999999999999999999
Q ss_pred eccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC--CCHHHHHHHHHHHHHcCceeeeccCCCCHHH
Q 018137 113 TKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS--TPIEETVRAMNYVIDKGWAFYWGTSEWSAQQ 190 (360)
Q Consensus 113 tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~--~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~ 190 (360)
||++. .+.+++.+.+++++||++||+||||||+||||.+. ..+.|+|.+|++|+++|+||+||||||+..+
T Consensus 75 tKvw~-------~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~ 147 (280)
T COG0656 75 TKVWP-------SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEH 147 (280)
T ss_pred eecCC-------ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHH
Confidence 99952 24678999999999999999999999999999763 3378999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEeccccccc-ccccccCCCCCCCCccchhhhhh
Q 018137 191 ITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGV-LTGKYNKGSIPPDSRFALENYKN 269 (360)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~-L~g~~~~~~~p~~~~~~~~~~~~ 269 (360)
|+++++.++ +.|++||++||++.++. +++++|+++||.+++|+||+.|. +.
T Consensus 148 L~~l~~~~~----~~p~~NQIe~hp~~~q~---el~~~~~~~gI~v~AysPL~~g~~l~--------------------- 199 (280)
T COG0656 148 LEELLSLAK----VKPAVNQIEYHPYLRQP---ELLPFCQRHGIAVEAYSPLAKGGKLL--------------------- 199 (280)
T ss_pred HHHHHHhcC----CCCceEEEEeccCCCcH---HHHHHHHHcCCEEEEECCcccccccc---------------------
Confidence 999998855 78999999999999986 49999999999999999999653 21
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 018137 270 LASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAV 349 (360)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l~~~~ 349 (360)
.. +.+..||++||.|++|++|+|+++++ .++||.+++++|++||++++++ .||+|||+.|+++.
T Consensus 200 --~~----------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f--~Ls~ed~~~i~~l~ 263 (280)
T COG0656 200 --DN----------PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDF--ELSEEDMAAIDALD 263 (280)
T ss_pred --cC----------hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcC--CCCHHHHHHHHhhc
Confidence 11 27899999999999999999999999 4599999999999999999999 99999999999998
Q ss_pred ccC
Q 018137 350 LSK 352 (360)
Q Consensus 350 ~~~ 352 (360)
...
T Consensus 264 ~~~ 266 (280)
T COG0656 264 RGY 266 (280)
T ss_pred ccc
Confidence 865
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.1e-59 Score=441.87 Aligned_cols=294 Identities=24% Similarity=0.399 Sum_probs=248.0
Q ss_pred eeecCCCCcccCccccccccccC---CCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEE
Q 018137 35 YKHLGRSGLRVSQLSYGAWVSFG---NQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVV 111 (360)
Q Consensus 35 ~r~lg~tg~~vs~lglG~~~~~~---~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i 111 (360)
||+||+||++||+||||||. +| +..+.+++.+++++|+++|||+||||+.||+|.||+.+|++|++.+.+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~-~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASP-LGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCccccccc-ccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 68999999999999999994 43 246889999999999999999999999999999999999999987667999999
Q ss_pred EeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC---CCHHHHHHHHHHHHHcCceeeeccCCCCH
Q 018137 112 STKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS---TPIEETVRAMNYVIDKGWAFYWGTSEWSA 188 (360)
Q Consensus 112 ~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~---~~~~~~~~al~~L~~~G~ir~iGvs~~~~ 188 (360)
+||++.. +...+++++.+++++++||++||+||||+|+||||+.. ..++++|++|++|+++||||+||+|||++
T Consensus 80 ~TK~~~~---~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 156 (314)
T PLN02587 80 STKCGRY---GEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPL 156 (314)
T ss_pred EeccccC---CCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCH
Confidence 9998521 11135789999999999999999999999999999743 34678999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhhh
Q 018137 189 QQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYK 268 (360)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~ 268 (360)
+++..+.+... .+.+.+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++.... +.
T Consensus 157 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~--~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------~~----- 221 (314)
T PLN02587 157 AIFTYVLDRVP-PGTVDVILSYCHYSLNDSSL--EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-------WH----- 221 (314)
T ss_pred HHHHHHHHhhh-cCCCCeEEeccccCcchhhH--HHHHHHHHHcCceEEEechhhccccCCCCCCC-------CC-----
Confidence 98887776432 33345666789999987643 47999999999999999999999999763211 00
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccC--CCCCHHHHHHHH
Q 018137 269 NLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVI--PLLTPSVMDKIE 346 (360)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~--~~L~~~e~~~l~ 346 (360)
. .........+.++++|+++++|++|+||+|++++|.|+++|+|+++++||++|+++++.. .+|+++++++|+
T Consensus 222 ----~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~ 296 (314)
T PLN02587 222 ----P-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVE 296 (314)
T ss_pred ----C-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHH
Confidence 0 012344556788999999999999999999999999999999999999999999998632 169999999999
Q ss_pred HHHccC
Q 018137 347 AAVLSK 352 (360)
Q Consensus 347 ~~~~~~ 352 (360)
++.+..
T Consensus 297 ~~~~~~ 302 (314)
T PLN02587 297 AILAPV 302 (314)
T ss_pred Hhhccc
Confidence 988643
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=7.4e-57 Score=417.58 Aligned_cols=283 Identities=41% Similarity=0.682 Sum_probs=247.1
Q ss_pred eeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEec
Q 018137 35 YKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTK 114 (360)
Q Consensus 35 ~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK 114 (360)
+|+||+||++||+||||||...+...+.+++.++++.|+++|||+||||+.||+|.||+.+|++|++.+ .|++++|+||
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~-~R~~~~i~tK 79 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERG-PREEVFIATK 79 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccC-CcCcEEEEee
Confidence 588999999999999999943322247799999999999999999999999999999999999999865 5999999999
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCC-HHHHHHHHHHHHHcCceeeeccCCCCHHHHHH
Q 018137 115 IFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTP-IEETVRAMNYVIDKGWAFYWGTSEWSAQQITE 193 (360)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~-~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~ 193 (360)
++... ....+.+++.+++++++||++||+||||+|+||||+.... ..++|++|++|+++|+||+||+|||+++.+.+
T Consensus 80 ~~~~~--~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~ 157 (285)
T cd06660 80 VGPRP--GDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEE 157 (285)
T ss_pred ecCCC--CCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHH
Confidence 95311 1113478999999999999999999999999999988766 88999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhhhhhhcc
Q 018137 194 AWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLASR 273 (360)
Q Consensus 194 ~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~ 273 (360)
+++.+. ++|+++|++||++++.. +.+++++|+++||++++|+||++|.|+++......+ .
T Consensus 158 ~~~~~~----~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~-----~---------- 217 (285)
T cd06660 158 ALAAAG----VPPAVNQVEYNLLDRQA-EEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPP-----P---------- 217 (285)
T ss_pred HHHhhC----CCceEEecccCcccCch-HHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCC-----C----------
Confidence 887763 67999999999999986 447999999999999999999999998655433100 0
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHHHH
Q 018137 274 SLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEA 347 (360)
Q Consensus 274 ~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l~~ 347 (360)
.......+..++++++.+++|+||+|++++|.++++|+|+++++|+++|++++.. +|++++++.|++
T Consensus 218 -----~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~--~L~~~~~~~l~~ 284 (285)
T cd06660 218 -----EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDF--ELSDEDLAALDA 284 (285)
T ss_pred -----hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccC--CCCHHHHHHHhh
Confidence 0013467899999999999999999999999999999999999999999999977 999999999985
No 9
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.3e-57 Score=419.49 Aligned_cols=281 Identities=36% Similarity=0.606 Sum_probs=235.2
Q ss_pred ccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCC
Q 018137 47 QLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKG 126 (360)
Q Consensus 47 ~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~ 126 (360)
+||||||+..+...+.+++.++|+.|++.|||+||||+.||+|.||+.+|++|++.+.+|++++|+||+.. .......
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~--~~~~~~~ 78 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYG--DGKPEPD 78 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEES--SSSTGGG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence 58999995544489999999999999999999999999999999999999999997778999999999921 1123346
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCC-HHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCC
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTP-IEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVG 205 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~-~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~ 205 (360)
.+++.+++++++||++||+||||+|+||||+.... .+++|++|++|+++|+||+||||||+++.++++ ...+.++
T Consensus 79 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~----~~~~~~~ 154 (283)
T PF00248_consen 79 YSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAA----LKIGSIP 154 (283)
T ss_dssp SSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH----HTCTSS-
T ss_pred ccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccc----ccccccc
Confidence 89999999999999999999999999999999988 899999999999999999999999999888887 3345588
Q ss_pred ceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHH
Q 018137 206 PIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNR 285 (360)
Q Consensus 206 ~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (360)
|+++|++||++++.. +.+++++|+++||++++|+||++|+|++++.....+...... .......+.
T Consensus 155 ~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 220 (283)
T PF00248_consen 155 PDVVQINYNLLNRRE-EEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL-------------RDAQELADA 220 (283)
T ss_dssp ESEEEEE-BTTBHBG-GHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS-------------STHGGGHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccCccccccccCCCccccccc-------------chhhhhhhh
Confidence 999999999995554 678999999999999999999999999887665322110000 002334568
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 018137 286 LKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAV 349 (360)
Q Consensus 286 l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l~~~~ 349 (360)
+.++++++|+|++|+||+|+++++.+.++|+|+++++||++|+++++. +||+++++.|++++
T Consensus 221 l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~--~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 221 LRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDF--PLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSS--G--HHHHHHHHTTH
T ss_pred hhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCC--CCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999988 99999999999865
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=8.2e-55 Score=404.05 Aligned_cols=273 Identities=22% Similarity=0.338 Sum_probs=229.5
Q ss_pred CceeecCCCCcccCcccccccccc-----CCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCC
Q 018137 33 MQYKHLGRSGLRVSQLSYGAWVSF-----GNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRS 107 (360)
Q Consensus 33 m~~r~lg~tg~~vs~lglG~~~~~-----~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~ 107 (360)
|...++.-+|++||+||||||++. |...+.+++.++|+.|+++|||+||||+.||+|.||+++|++++. .|+
T Consensus 5 ~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~---~R~ 81 (290)
T PRK10376 5 MSSGTFTLGGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP---YPD 81 (290)
T ss_pred ccCCceecCCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc---CCC
Confidence 433333334899999999999532 224577899999999999999999999999999999999999974 599
Q ss_pred cEEEEeccccCCC--CCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCC-----CCCHHHHHHHHHHHHHcCceee
Q 018137 108 DIVVSTKIFWGGQ--GPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDT-----STPIEETVRAMNYVIDKGWAFY 180 (360)
Q Consensus 108 ~v~i~tK~~~~~~--~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~-----~~~~~~~~~al~~L~~~G~ir~ 180 (360)
+++|+||+++... .....+.+++.+++++++||+||||||||+|++|+++. ..+++++|++|++|+++||||+
T Consensus 82 ~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~ 161 (290)
T PRK10376 82 DLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRH 161 (290)
T ss_pred eEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeE
Confidence 9999999863211 11123578999999999999999999999999887421 2357889999999999999999
Q ss_pred eccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCC
Q 018137 181 WGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDS 260 (360)
Q Consensus 181 iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~ 260 (360)
||+|||++++++++.+. .+++++|++||++++.. .+++++|+++||++++|+||+++. +
T Consensus 162 iGvSn~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~--~~~~~~~~~~gi~v~a~~pL~g~~----------~--- 220 (290)
T PRK10376 162 IGLSNVTPTQVAEARKI------AEIVCVQNHYNLAHRAD--DALIDALARDGIAYVPFFPLGGFT----------P--- 220 (290)
T ss_pred EEecCCCHHHHHHHHhh------CCeEEEecccCCCcCCh--HHHHHHHHHcCCEEEEeecCCCCC----------h---
Confidence 99999999999888765 34789999999999763 468999999999999999997431 0
Q ss_pred ccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHH
Q 018137 261 RFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPS 340 (360)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~ 340 (360)
+ ..+.+.++|+++|.|++|+||+|+++++++.++|+|+++++|+++|++++++ +|+++
T Consensus 221 -~-------------------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~--~L~~e 278 (290)
T PRK10376 221 -L-------------------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAEL--VLSEE 278 (290)
T ss_pred -h-------------------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccC--CCCHH
Confidence 0 0147889999999999999999999987777899999999999999999998 89999
Q ss_pred HHHHHHHHHcc
Q 018137 341 VMDKIEAAVLS 351 (360)
Q Consensus 341 e~~~l~~~~~~ 351 (360)
+++.|+++..+
T Consensus 279 ~~~~l~~~~~~ 289 (290)
T PRK10376 279 VLAELDGIARE 289 (290)
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=4.6e-55 Score=401.08 Aligned_cols=251 Identities=24% Similarity=0.357 Sum_probs=222.0
Q ss_pred cccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCC
Q 018137 43 LRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGP 122 (360)
Q Consensus 43 ~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~ 122 (360)
++||+||||||. . +.+++.+++++|++.|||+||||+.||+ |+.+|++|++.+++|++++|+||++.
T Consensus 1 ~~vs~lglGt~~-~----~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~---E~~lG~al~~~~~~R~~v~i~TK~~~----- 67 (267)
T PRK11172 1 MSIPAFGLGTFR-L----KDQVVIDSVKTALELGYRAIDTAQIYDN---EAAVGQAIAESGVPRDELFITTKIWI----- 67 (267)
T ss_pred CCCCCEeeEccc-c----ChHHHHHHHHHHHHcCCCEEEccchhCC---HHHHHHHHHHcCCChhHeEEEEEeCC-----
Confidence 369999999993 3 3478999999999999999999999974 99999999987778999999999841
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC--CCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhh
Q 018137 123 NDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS--TPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAER 200 (360)
Q Consensus 123 ~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~--~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 200 (360)
.+.+++.+++++++||+|||+||||+|++|||++. .+.+++|++|++|+++||||+||||||+.+++.++++.+.
T Consensus 68 --~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~- 144 (267)
T PRK11172 68 --DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVG- 144 (267)
T ss_pred --CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcC-
Confidence 13678999999999999999999999999999763 5678999999999999999999999999999999887543
Q ss_pred cCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhhhhhhcchhhHHHH
Q 018137 201 LDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVL 280 (360)
Q Consensus 201 ~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 280 (360)
..+++++|++||++++. .+++++|+++||++++|+||++|.+.. .
T Consensus 145 --~~~~~~~Q~~~~~~~~~---~~ll~~~~~~gi~v~a~spl~~G~~~~-----------------------~------- 189 (267)
T PRK11172 145 --AENIATNQIELSPYLQN---RKVVAFAKEHGIHVTSYMTLAYGKVLK-----------------------D------- 189 (267)
T ss_pred --CCCCeEEeeecCCCCCc---HHHHHHHHHCCCEEEEECCCCCCcccC-----------------------C-------
Confidence 23688999999999875 379999999999999999999985421 0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHHHHHHcc
Q 018137 281 NKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLS 351 (360)
Q Consensus 281 ~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l~~~~~~ 351 (360)
+.+.++|+++|.|++|+||+|+++++. ++|+|+++++|+++|++++++ +|++++++.|+++.++
T Consensus 190 ---~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~--~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 ---PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDL--QLDAEDMAAIAALDRN 253 (267)
T ss_pred ---HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCC--CcCHHHHHHHhhhccC
Confidence 268889999999999999999999973 599999999999999999998 9999999999998754
No 12
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.5e-55 Score=394.59 Aligned_cols=262 Identities=29% Similarity=0.437 Sum_probs=232.3
Q ss_pred eeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHH----hcCCCCCcEE
Q 018137 35 YKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIR----ELGWKRSDIV 110 (360)
Q Consensus 35 ~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~----~~~~~R~~v~ 110 (360)
+.+| ++|.++|.||||||+ .+..++.+.++.|++.|++|||||..|+| |+.+|++|+ +.+++|+++|
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~-----~~~~~~~~aV~~Al~~GYRHIDtA~~Y~N---E~evG~aik~~i~~~~v~RediF 76 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQ-----SPPGQVAEAVKAAIKAGYRHIDTAHVYGN---EKEVGEAIKELLAEGGVKREDIF 76 (300)
T ss_pred eEec-cCCCccceeeeEecc-----cChhhHHHHHHHHHHhCcceeechhhhCC---hHHHHHHHHHHhhhCCcchhhhe
Confidence 4566 899999999999994 45689999999999999999999999999 999999999 4468999999
Q ss_pred EEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC----------------CCHHHHHHHHHHHHH
Q 018137 111 VSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS----------------TPIEETVRAMNYVID 174 (360)
Q Consensus 111 i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~----------------~~~~~~~~al~~L~~ 174 (360)
|+||++. ....++.++.+|++||++||+||+|||++|||-.. .++.++|++||++++
T Consensus 77 iTSKlw~-------~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~ 149 (300)
T KOG1577|consen 77 ITSKLWP-------TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVD 149 (300)
T ss_pred eeeccCc-------cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHH
Confidence 9999952 23688999999999999999999999999999654 346789999999999
Q ss_pred cCceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCC
Q 018137 175 KGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKG 254 (360)
Q Consensus 175 ~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~ 254 (360)
.|++|+||||||+..+|++++..++ ++|.++|+++|+.-++. +++++|+++||.|.+||||+.+-- +
T Consensus 150 ~Gl~rsIGVSNF~~~~le~ll~~~k----i~P~vnQvE~HP~~~Q~---~L~~fCk~~~I~v~AYSpLg~~~~-~----- 216 (300)
T KOG1577|consen 150 EGLVRSIGVSNFNIKQLEELLNLAK----IKPAVNQVECHPYLQQK---KLVEFCKSKGIVVTAYSPLGSPGR-G----- 216 (300)
T ss_pred cCCceEeeeecCCHHHHHHHHhcCC----CCCccceeeccCCcChH---HHHHHHhhCCcEEEEecCCCCCCC-c-----
Confidence 9999999999999999999999885 89999999999988765 699999999999999999998621 0
Q ss_pred CCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccC
Q 018137 255 SIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVI 334 (360)
Q Consensus 255 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~ 334 (360)
. +.+.. +.+.+||++|+.|++|++|||+++++. +|||.++++++++||++.+++
T Consensus 217 ------~-------~ll~~----------~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf- 270 (300)
T KOG1577|consen 217 ------S-------DLLED----------PVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDF- 270 (300)
T ss_pred ------c-------ccccC----------HHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccc-
Confidence 0 11112 489999999999999999999999984 599999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccC
Q 018137 335 PLLTPSVMDKIEAAVLSK 352 (360)
Q Consensus 335 ~~L~~~e~~~l~~~~~~~ 352 (360)
.||++|++.|+......
T Consensus 271 -~Lt~ed~~~i~~~~~~~ 287 (300)
T KOG1577|consen 271 -ELTEEDMKKLDSLNSNE 287 (300)
T ss_pred -cCCHHHHHHHhhccccc
Confidence 99999999999766554
No 13
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2e-54 Score=372.41 Aligned_cols=287 Identities=25% Similarity=0.350 Sum_probs=257.8
Q ss_pred CceeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEE
Q 018137 33 MQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVS 112 (360)
Q Consensus 33 m~~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~ 112 (360)
|++.++++.++++|+|.+|+|+......+.++...++..|++.|||+||-|+.||++.+|+++|.+|+-.+..|+++.|.
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRekieiv 80 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKIEIV 80 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhheEee
Confidence 78899999999999999999987766788899999999999999999999999999999999999999888789999999
Q ss_pred eccccCCC-----CCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCC
Q 018137 113 TKIFWGGQ-----GPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWS 187 (360)
Q Consensus 113 tK~~~~~~-----~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~ 187 (360)
||+++-.. .-...++|.++|..+++.||++|+|||||+++||+||+..+.+|+.+|+..|++.||||++|||||+
T Consensus 81 sKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVSNf~ 160 (298)
T COG4989 81 SKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVSNFN 160 (298)
T ss_pred eccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecCCCC
Confidence 99974321 1135789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhh
Q 018137 188 AQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENY 267 (360)
Q Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~ 267 (360)
+.+++-+..+.. .+.++||++.|+++......+.+++|+++.|.+++||||++|.+.- +.
T Consensus 161 p~Q~~LL~s~l~----~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~---g~------------- 220 (298)
T COG4989 161 PAQFELLQSRLP----FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFL---GD------------- 220 (298)
T ss_pred HHHHHHHHHhcc----chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcccc---CC-------------
Confidence 999888777765 4578999999999998878889999999999999999999985421 11
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHHH
Q 018137 268 KNLASRSLVDDVLNKVNRLKPIADELG-VPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIE 346 (360)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~l~~la~~~~-~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l~ 346 (360)
.......+.+..+|.++| .|..+++++|++.+|.-..+|+|+.+++++++.++|++. .|+.++|-+|.
T Consensus 221 ---------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~--~LtRqqWf~Iy 289 (298)
T COG4989 221 ---------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSL--TLTRQQWFEIY 289 (298)
T ss_pred ---------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhc--cccHHHHHHHH
Confidence 112223468999999999 699999999999999888899999999999999999999 99999999998
Q ss_pred HHHc
Q 018137 347 AAVL 350 (360)
Q Consensus 347 ~~~~ 350 (360)
.+..
T Consensus 290 ~Aa~ 293 (298)
T COG4989 290 TAAI 293 (298)
T ss_pred HHhc
Confidence 8764
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.1e-53 Score=393.29 Aligned_cols=257 Identities=26% Similarity=0.389 Sum_probs=224.9
Q ss_pred eeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEec
Q 018137 35 YKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTK 114 (360)
Q Consensus 35 ~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK 114 (360)
+.+| ++|++||+||||||+ .+.+++.++|++|++.|||+||||+.||+ |+.+|+||++.+++|++++|+||
T Consensus 6 ~~~l-~~g~~v~~lglG~~~-----~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---E~~lG~al~~~~~~R~~~~i~tK 76 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQ-----ASNEEVITAIHKALEVGYRSIDTAAIYKN---EEGVGKALKEASVAREELFITTK 76 (275)
T ss_pred eEEc-CCCCccCCcceECcc-----CCHHHHHHHHHHHHHhCCCEEEchhhhCC---HHHHHHHHHHcCCCHHHEEEEEE
Confidence 3556 789999999999993 34688999999999999999999999974 99999999987667999999999
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCC-CHHHHHHHHHHHHHcCceeeeccCCCCHHHHHH
Q 018137 115 IFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTST-PIEETVRAMNYVIDKGWAFYWGTSEWSAQQITE 193 (360)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~ 193 (360)
++. .+++.+++++++||++||+||||+|++|||++.. .+.++|++|++|+++|+||+||+|||+++++++
T Consensus 77 ~~~---------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~ 147 (275)
T PRK11565 77 LWN---------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQR 147 (275)
T ss_pred ecC---------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHH
Confidence 841 3568999999999999999999999999998753 478999999999999999999999999999998
Q ss_pred HHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhhhhhhcc
Q 018137 194 AWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLASR 273 (360)
Q Consensus 194 ~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~ 273 (360)
++..+. ++|+++|++||++.+. .+++++|+++||++++|+||++|.- + .+ .
T Consensus 148 ~~~~~~----v~~~~~Q~~~~~~~~~---~~~~~~~~~~~i~~~a~spl~~G~~-~-----------~~---------~- 198 (275)
T PRK11565 148 LIDETG----VTPVINQIELHPLMQQ---RQLHAWNATHKIQTESWSPLAQGGK-G-----------VF---------D- 198 (275)
T ss_pred HHHhCC----CCceeeeeecCCccch---HHHHHHHHHCCCEEEEEccCCCCCc-c-----------cc---------c-
Confidence 875432 5689999999999875 3689999999999999999997620 0 00 0
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHHHHHHcc
Q 018137 274 SLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLS 351 (360)
Q Consensus 274 ~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l~~~~~~ 351 (360)
.+.+.++|+++|+|++|+||+|+++++. ++|+|+++++|+++|++++++ +|+++++++|+++...
T Consensus 199 ---------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~--~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 199 ---------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDF--RLDKDELGEIAKLDQG 263 (275)
T ss_pred ---------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCC--CcCHHHHHHHHhhccc
Confidence 0368899999999999999999999974 499999999999999999998 9999999999998754
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=8.1e-54 Score=396.76 Aligned_cols=266 Identities=20% Similarity=0.271 Sum_probs=222.7
Q ss_pred CcccCccccccccccC----------CCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEE
Q 018137 42 GLRVSQLSYGAWVSFG----------NQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVV 111 (360)
Q Consensus 42 g~~vs~lglG~~~~~~----------~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i 111 (360)
+++||+||||||. +| +..+.+++.++|+.|+++||||||||+.| |.||+.+|++|+. ..++++++
T Consensus 2 ~~~vs~iglGt~~-~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~Y--G~SE~~lG~al~~--~~~~~~~i 76 (292)
T PRK14863 2 SSPVSKLGLAAAQ-FGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLF--GRAETVLGQLIPR--PVPFRVTL 76 (292)
T ss_pred CCcceeeeeeeec-cCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhh--hhHHHHHhhhhcc--CCceEeec
Confidence 4789999999994 44 24688999999999999999999999999 6799999999974 13467889
Q ss_pred EeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC-CCH-HHHHHHHHHHHHcCceeeeccCCCCHH
Q 018137 112 STKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS-TPI-EETVRAMNYVIDKGWAFYWGTSEWSAQ 189 (360)
Q Consensus 112 ~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~-~~~-~~~~~al~~L~~~G~ir~iGvs~~~~~ 189 (360)
+||.. +.+++.+++++++||+|||+||||+|++|+|+.. .+. +++|++|++|+++||||+||||||++.
T Consensus 77 ~tk~~---------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 77 STVRA---------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccccc---------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 99852 2568999999999999999999999999999763 333 578999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhhhh
Q 018137 190 QITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKN 269 (360)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~ 269 (360)
++.++... .+|+++|++||++++.....+++++|+++||++++|+||++|+|++.... .+.
T Consensus 148 ~~~~~~~~------~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~--~~~----------- 208 (292)
T PRK14863 148 DPVGVARR------FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDR--VPA----------- 208 (292)
T ss_pred HHHHHHhc------CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCccc--Ccc-----------
Confidence 88776432 47899999999999875224689999999999999999999999742100 000
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCHHHHHHHHH
Q 018137 270 LASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEA 347 (360)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~~e~~~l~~ 347 (360)
.+......+..+.+++.++++|++|+||+|++++|.|+++|+|+++++||++|+++.+. ++++..+++|.-
T Consensus 209 -----~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~--~~~~~~~~~l~~ 279 (292)
T PRK14863 209 -----QLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASS--PPPDLDWDDMAI 279 (292)
T ss_pred -----chhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhc--CCCccchhhccC
Confidence 01122344567788888899999999999999999999999999999999999999987 899988877763
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=5.5e-50 Score=363.40 Aligned_cols=272 Identities=22% Similarity=0.312 Sum_probs=234.6
Q ss_pred CceeecCCCCcccCccccccccccC---CCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcE
Q 018137 33 MQYKHLGRSGLRVSQLSYGAWVSFG---NQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDI 109 (360)
Q Consensus 33 m~~r~lg~tg~~vs~lglG~~~~~~---~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v 109 (360)
|.||++|+||.++|.||||||+... +..+.+.+.++|++|+++||||||||+.|+.|.||..+|++|++. .|++|
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~--~Rekv 78 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG--YREKV 78 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc--ccceE
Confidence 8899999999999999999996432 467889999999999999999999999999999999999999984 59999
Q ss_pred EEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHH-----HHHHHHHHHHHcCceeeeccC
Q 018137 110 VVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIE-----ETVRAMNYVIDKGWAFYWGTS 184 (360)
Q Consensus 110 ~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~-----~~~~al~~L~~~G~ir~iGvs 184 (360)
+++||+. ...-.+.+++++-++++|++||+||+|+|+||+... ..++ ..++.+++++++|+||++|+|
T Consensus 79 ~LaTKlp------~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 79 KLATKLP------SWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EEEeecC------CccccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 9999993 233468899999999999999999999999999877 3222 268999999999999999999
Q ss_pred CCCH-HHHHHHHHHHhhcCCCCceeecccccccccchhh-hchhhHHHhcCCeEEEecccccccccccccCCCCCCCCcc
Q 018137 185 EWSA-QQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVE-AEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRF 262 (360)
Q Consensus 185 ~~~~-~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~ 262 (360)
.|++ +.+.+++.. .+++++|++||.+++.... .+.+.+|.++|++|+.++|+.+|-|..+
T Consensus 152 fHgs~e~~~~iv~a------~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~------------ 213 (391)
T COG1453 152 FHGSTEVFKEIVDA------YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN------------ 213 (391)
T ss_pred CCCCHHHHHHHHhc------CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC------------
Confidence 8884 445666554 4599999999999987521 2678999999999999999999977521
Q ss_pred chhhhhhhhcchhhHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCC-CCH
Q 018137 263 ALENYKNLASRSLVDDVLNKVNRLKPIADELG--VPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPL-LTP 339 (360)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~--~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~-L~~ 339 (360)
.| +++++|+.+++ .||+.+|+||++++|.|+++++|+++++||+||++.++...| ||+
T Consensus 214 ----------vP---------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte 274 (391)
T COG1453 214 ----------VP---------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTE 274 (391)
T ss_pred ----------CC---------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCH
Confidence 11 37788888876 489999999999999999999999999999999999987664 999
Q ss_pred HHHHHHHHHHc
Q 018137 340 SVMDKIEAAVL 350 (360)
Q Consensus 340 ~e~~~l~~~~~ 350 (360)
+|.+.|+++.+
T Consensus 275 ~e~~il~~v~~ 285 (391)
T COG1453 275 EELQILEKVEE 285 (391)
T ss_pred HHHHHHHHHHH
Confidence 99998887764
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.6e-48 Score=338.28 Aligned_cols=285 Identities=26% Similarity=0.397 Sum_probs=237.4
Q ss_pred cccCCceeecCCCCcccCcccccccc---ccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCC
Q 018137 29 QNYKMQYKHLGRSGLRVSQLSYGAWV---SFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWK 105 (360)
Q Consensus 29 ~~~~m~~r~lg~tg~~vs~lglG~~~---~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~ 105 (360)
.+..|+||.+|.||++||+||||+.. .+| +.+.++....+..|+.+|||+|||++.||.+.||+.+|.++++ +|
T Consensus 18 ~vrrmeyR~lg~tgl~VSk~~fGga~L~~~fg-d~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~--vP 94 (342)
T KOG1576|consen 18 KVRRMEYRQLGSTGLRVSKLGFGGAALGQLFG-DEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD--VP 94 (342)
T ss_pred HHHHHHHhhcCCCcceeeeeeecchhhhhhcC-CcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh--CC
Confidence 34569999999999999999999872 344 3677888888888999999999999999999999999999998 78
Q ss_pred CCcEEEEeccc-cCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC----CCHHHHHHHHHHHHHcCceee
Q 018137 106 RSDIVVSTKIF-WGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS----TPIEETVRAMNYVIDKGWAFY 180 (360)
Q Consensus 106 R~~v~i~tK~~-~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~----~~~~~~~~al~~L~~~G~ir~ 180 (360)
|+.+||+||++ ++-...+..+++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++|+++||||+
T Consensus 95 R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~Rf 174 (342)
T KOG1576|consen 95 REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRF 174 (342)
T ss_pred hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeE
Confidence 99999999995 2112234578999999999999999999999999999987654 235789999999999999999
Q ss_pred eccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCC
Q 018137 181 WGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDS 260 (360)
Q Consensus 181 iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~ 260 (360)
|||+.++..-+.++.+. ..|.++....-.+|++.+... ..++++.+.+|++|+.-++++.|+|+.. + +|+.
T Consensus 175 iGitgypldvl~~~ae~--~~G~~dvvlsY~ry~l~d~tL--l~~~~~~~sk~vgVi~AsalsmgLLt~~---g-p~~w- 245 (342)
T KOG1576|consen 175 IGITGYPLDVLTECAER--GKGRLDVVLSYCRYTLNDNTL--LRYLKRLKSKGVGVINASALSMGLLTNQ---G-PPPW- 245 (342)
T ss_pred eeecccchHHHHHHHhc--CCCceeeehhhhhhccccHHH--HHHHHHHHhcCceEEehhhHHHHHhhcC---C-CCCC-
Confidence 99999999999998753 344444444558888877653 4678888999999999999999999732 1 2222
Q ss_pred ccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccCCCCCH
Q 018137 261 RFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTP 339 (360)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~~~L~~ 339 (360)
+|...+......+..++|++.|+..+.+|++|.++.+++.++++|+++.++|+.|+++... .||.
T Consensus 246 ------------HPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~--~ls~ 310 (342)
T KOG1576|consen 246 ------------HPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFD--RLSS 310 (342)
T ss_pred ------------CCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhc--cccc
Confidence 1222344555678889999999999999999999999999999999999999999997654 7887
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.03 E-value=1.2e-05 Score=70.25 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEec
Q 018137 162 IEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWS 240 (360)
Q Consensus 162 ~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~ 240 (360)
+.+.|..||+++.+|+|..||+|.|+..+|++++..++ +.|..+|++..-.+.-+ .++..+|..++|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq----VvP~snqVnL~~cCvvP--pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ----VVPESNQVNLGQCCVVP--PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc----cccccceeeccccccCC--HHHHHHhhhcceeeeecC
Confidence 45689999999999999999999999999999999987 88999999999888766 578999999999988775
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=88.33 E-value=22 Score=33.22 Aligned_cols=155 Identities=15% Similarity=0.037 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEecccCCCCC-hH-HHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHH
Q 018137 61 DVKEAKSLLQCCRDHGVNFFDNAEVYANG-RA-EEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKA 138 (360)
Q Consensus 61 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G-~s-E~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 138 (360)
+.++..+.++.+++.|++.|+.-- |.. .. .+.+ +++++. .. ++-|.-+... ..+.+... .+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v-~~lr~~-~g--~~~l~vD~n~--------~~~~~~A~-~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERI-RAIREA-AP--DARLRVDANQ--------GWTPEEAV-ELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHH-HHHHHh-CC--CCeEEEeCCC--------CcCHHHHH-HHHH
Confidence 457777888888999999998742 221 11 2233 333331 22 5566666631 24444432 3334
Q ss_pred HHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceee-eccCCCCHHHHHHHHHHHhhcCCCCceeecccccccc
Q 018137 139 SLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFY-WGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLS 217 (360)
Q Consensus 139 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~-iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~ 217 (360)
.|+.++ +.++-.|-+.. -++.+.+|++...|.- .|=+-++.+++.++++. ...+++|+.-+.+-
T Consensus 199 ~l~~~~-----l~~iEeP~~~~----d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~------~~~d~v~~~~~~~G 263 (316)
T cd03319 199 ELAELG-----VELIEQPVPAG----DDDGLAYLRDKSPLPIMADESCFSAADAARLAGG------GAYDGINIKLMKTG 263 (316)
T ss_pred HHHhcC-----CCEEECCCCCC----CHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc------CCCCEEEEeccccC
Confidence 455544 44455554322 3566778887766653 35667788888877664 23667777655432
Q ss_pred cchhhhchhhHHHhcCCeEEEecccccc
Q 018137 218 RHKVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 218 ~~~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
--..-..+..+|+++|+.++..+-+.++
T Consensus 264 Gi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 264 GLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 1111246788999999999987665544
No 20
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=87.86 E-value=16 Score=32.54 Aligned_cols=171 Identities=13% Similarity=0.171 Sum_probs=94.2
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHH
Q 018137 56 FGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEG 135 (360)
Q Consensus 56 ~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~ 135 (360)
.+...+.++..++++.-.+.||.+|+...........+.+-+..+..+ . ..+.+.+. .....++..
T Consensus 7 ~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~--~--~~~~~~~~----------~~~~~i~~~ 72 (237)
T PF00682_consen 7 NGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALP--N--ARLQALCR----------ANEEDIERA 72 (237)
T ss_dssp CSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHH--S--SEEEEEEE----------SCHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhc--c--cccceeee----------ehHHHHHHH
Confidence 344577899999999999999999999932222234455655555422 2 23333331 345666666
Q ss_pred HHHHHHhhCCCccceEEecCCC-----CCCC----HHHHHHHHHHHHHcCceeeecc---CCCCHHHHHHHHHHHhhcCC
Q 018137 136 TKASLKRLDMDYVDVIYCHRPD-----TSTP----IEETVRAMNYVIDKGWAFYWGT---SEWSAQQITEAWGIAERLDL 203 (360)
Q Consensus 136 ~~~sL~~Lg~d~iDl~~lH~p~-----~~~~----~~~~~~al~~L~~~G~ir~iGv---s~~~~~~l~~~~~~~~~~~~ 203 (360)
++. +...|.|.+.++.==++. .... ++.+.+..+..++.|.-..+++ +.++++.+.++.+.+.+.|
T Consensus 73 ~~~-~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g- 150 (237)
T PF00682_consen 73 VEA-AKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG- 150 (237)
T ss_dssp HHH-HHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-
T ss_pred HHh-hHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC-
Confidence 653 356787777766432210 0111 3445566777778888888885 4667777777777666554
Q ss_pred CCceeecc--cccccccchhhhchhhHHHhc----CCeEEEecccccc
Q 018137 204 VGPIVEQP--EYNMLSRHKVEAEYLPLYSNY----GIGLTTWSPLASG 245 (360)
Q Consensus 204 ~~~~~~q~--~~n~~~~~~~~~~~l~~~~~~----gi~vi~~~pl~~G 245 (360)
++.+.+ .+..+.+.. -.+++...+++ .+++..+.-++.+
T Consensus 151 --~~~i~l~Dt~G~~~P~~-v~~lv~~~~~~~~~~~l~~H~Hnd~Gla 195 (237)
T PF00682_consen 151 --ADIIYLADTVGIMTPED-VAELVRALREALPDIPLGFHAHNDLGLA 195 (237)
T ss_dssp ---SEEEEEETTS-S-HHH-HHHHHHHHHHHSTTSEEEEEEBBTTS-H
T ss_pred --CeEEEeeCccCCcCHHH-HHHHHHHHHHhccCCeEEEEecCCccch
Confidence 232222 233333332 23455555442 3555555555443
No 21
>PRK08609 hypothetical protein; Provisional
Probab=87.48 E-value=22 Score=36.34 Aligned_cols=154 Identities=16% Similarity=0.197 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCeEecccCCC-----CChHHHHHHHHHH---hc--CCCCCcEEEEeccccCCCCCCCCCCCHHHHHH
Q 018137 65 AKSLLQCCRDHGVNFFDNAEVYA-----NGRAEEIMGQAIR---EL--GWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVE 134 (360)
Q Consensus 65 ~~~~l~~A~~~Gin~~DTA~~Yg-----~G~sE~~lG~al~---~~--~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~ 134 (360)
..++++.|.+.|+.+|=.++|+. .|.+...+-..++ .. .+..=+|++..=+. ..++....
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~----------i~~~g~~d 420 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMD----------ILPDGSLD 420 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEe----------ecCCcchh
Confidence 45599999999999999998862 2344443333322 11 01111222222221 11112222
Q ss_pred HHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCC--------CCHHHHHHHHHHHhhcCCCCc
Q 018137 135 GTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSE--------WSAQQITEAWGIAERLDLVGP 206 (360)
Q Consensus 135 ~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~--------~~~~~l~~~~~~~~~~~~~~~ 206 (360)
..+..|+. .||+ +.-+|++. ..+.++.++.+.++.+.|.+.-||=-. .-...+.++++.+...|
T Consensus 421 ~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G---- 492 (570)
T PRK08609 421 YDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN---- 492 (570)
T ss_pred hcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC----
Confidence 33335554 5776 77889753 334567788898998889887776221 12345677777766655
Q ss_pred eeecccccccccchhhhchhhHHHhcCCeEE
Q 018137 207 IVEQPEYNMLSRHKVEAEYLPLYSNYGIGLT 237 (360)
Q Consensus 207 ~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi 237 (360)
.++|++-+.+.... ...++..|.+.|+.+.
T Consensus 493 ~~lEINa~~~r~~~-~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 493 TALELNANPNRLDL-SAEHLKKAQEAGVKLA 522 (570)
T ss_pred CEEEEcCCccccCc-cHHHHHHHHHcCCEEE
Confidence 24555555443222 4568899999998754
No 22
>PRK07945 hypothetical protein; Provisional
Probab=83.85 E-value=14 Score=35.11 Aligned_cols=158 Identities=11% Similarity=0.031 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCC-----ChHHHHHHHHHHhc---CCCCCcEEEEeccccCCCCCCCCCCCHHHHHH
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYAN-----GRAEEIMGQAIREL---GWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVE 134 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~-----G~sE~~lG~al~~~---~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~ 134 (360)
....+++.+|.+.|+.++=.++|... +.+.+.+-+.++.. ...-.++-| +.|.-.. ...+...+
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~I--l~GiE~d--~~~~g~~~---- 182 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRI--LTGIEVD--ILDDGSLD---- 182 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceE--EEEeEec--ccCCCCcc----
Confidence 34778999999999999888877421 22233232222211 000012222 2221100 00011122
Q ss_pred HHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccC------C------CCHHHHHHHHHHHhhcC
Q 018137 135 GTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTS------E------WSAQQITEAWGIAERLD 202 (360)
Q Consensus 135 ~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs------~------~~~~~l~~~~~~~~~~~ 202 (360)
..++.|+. .||+ +.-+|+.... +..+..+.|.++.+.+++..+|=. + .....+.++++.+.+.|
T Consensus 183 ~~~~~l~~--~D~v-IgSvH~~~~~-~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g 258 (335)
T PRK07945 183 QEPELLDR--LDVV-VASVHSKLRM-DAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHG 258 (335)
T ss_pred hhHHHHHh--CCEE-EEEeecCCCC-CHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhC
Confidence 22333443 4666 7778986432 345566788888888887777721 1 11112456666666655
Q ss_pred CCCceeecccccccccchhhhchhhHHHhcCCeEE
Q 018137 203 LVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLT 237 (360)
Q Consensus 203 ~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi 237 (360)
. .+.+| -+.+...+ ...++..|++.|+.++
T Consensus 259 ~-~lEIN---t~~~r~~P-~~~il~~a~e~G~~vt 288 (335)
T PRK07945 259 T-AVEIN---SRPERRDP-PTRLLRLALDAGCLFS 288 (335)
T ss_pred C-EEEEe---CCCCCCCC-hHHHHHHHHHcCCeEE
Confidence 2 23333 23332323 4568999999998753
No 23
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.67 E-value=6.6 Score=37.94 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 018137 62 VKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLK 141 (360)
Q Consensus 62 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 141 (360)
......++++|++.|++++|||...-. +..+.+..+ +..+.+..-+|. +++.+--.....+++-.+
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~a~-----~Agit~v~~~G~------dPGi~nv~a~~a~~~~~~ 143 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEEP---PWKLDEEAK-----KAGITAVLGCGF------DPGITNVLAAYAAKELFD 143 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCch---hhhhhHHHH-----HcCeEEEcccCc------CcchHHHHHHHHHHHhhc
Confidence 345668999999999999999988743 222333332 344666666642 223444444444433333
Q ss_pred hhCCCccceEEecCCCCC
Q 018137 142 RLDMDYVDVIYCHRPDTS 159 (360)
Q Consensus 142 ~Lg~d~iDl~~lH~p~~~ 159 (360)
.+++||+|..+-|+..
T Consensus 144 --~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 --EIESIDIYVGGLGEHG 159 (389)
T ss_pred --cccEEEEEEecCCCCC
Confidence 5899999999988765
No 24
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=83.47 E-value=11 Score=34.24 Aligned_cols=106 Identities=11% Similarity=-0.018 Sum_probs=68.9
Q ss_pred HHHHHHcCceeeecc-CCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccc
Q 018137 169 MNYVIDKGWAFYWGT-SEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVL 247 (360)
Q Consensus 169 l~~L~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L 247 (360)
|.+-.++|+. .+|+ .......+.+++..+. +++.++-.++++++... -..++..|+..|+..+..-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G----~D~v~iD~EHg~~~~~~-~~~~i~a~~~~g~~~lVRvp~~~--- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAG----FDWLVLDGEHAPNDVST-FIPQLMALKGSASAPVVRVPTNE--- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcC----CCEEEEccccCCCCHHH-HHHHHHHHhhcCCCcEEECCCCC---
Confidence 4455556774 4553 3333344555555443 78889999999998765 34677788888888888765331
Q ss_pred cccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHH
Q 018137 248 TGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQEN 327 (360)
Q Consensus 248 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en 327 (360)
...++.+|..+....++|-..+.+++++.
T Consensus 81 ---------------------------------------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~ 109 (256)
T PRK10558 81 ---------------------------------------------------PVIIKRLLDIGFYNFLIPFVETAEEARRA 109 (256)
T ss_pred ---------------------------------------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHH
Confidence 12445566656555577777888888887
Q ss_pred HhhcccC
Q 018137 328 MKAIDVI 334 (360)
Q Consensus 328 ~~a~~~~ 334 (360)
++++.+.
T Consensus 110 v~a~kyp 116 (256)
T PRK10558 110 VASTRYP 116 (256)
T ss_pred HHHcCCC
Confidence 7777653
No 25
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=81.27 E-value=8.1 Score=33.42 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=67.9
Q ss_pred HHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccc
Q 018137 136 TKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNM 215 (360)
Q Consensus 136 ~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~ 215 (360)
+++.|....-+..|.+.|..- ...+..-...|+++.+-|+---|++.||..|....-+-... --|..-+++|+-
T Consensus 64 ld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~G----rmPvt~~lPy~W 137 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRG----RMPVTKALPYEW 137 (193)
T ss_pred HHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcC----CCCCCCCCCCcc
Confidence 334444555555565555431 11122334668888888987788999999998666443222 125556677776
Q ss_pred cccchh----hhchhhHHHhcCCeEEEeccccccc
Q 018137 216 LSRHKV----EAEYLPLYSNYGIGLTTWSPLASGV 246 (360)
Q Consensus 216 ~~~~~~----~~~~l~~~~~~gi~vi~~~pl~~G~ 246 (360)
++.... -.++.++|++.|+.|.-..++.++.
T Consensus 138 YdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 138 YDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred cCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 655431 2467889999999999999988764
No 26
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=80.82 E-value=51 Score=31.06 Aligned_cols=123 Identities=12% Similarity=0.143 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCCCh------HHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYANGR------AEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHI 132 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~------sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i 132 (360)
.++.++...+++.+.+.|+..|-- .| |. -++++.. +++.+. -.++.|.|-.. .+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~---tG-GEPllr~dl~~li~~-i~~~~~-l~~i~itTNG~--------------ll 103 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRL---TG-GEPLVRRGCDQLVAR-LGKLPG-LEELSLTTNGS--------------RL 103 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE---EC-cCCCccccHHHHHHH-HHhCCC-CceEEEEeChh--------------HH
Confidence 478899999999999999988763 23 31 1233322 233211 12455665531 12
Q ss_pred HHHHHHHHHhhCCCccceEEecCCCCC--------CCHHHHHHHHHHHHHcCc----eeeeccCCCCHHHHHHHHHHHhh
Q 018137 133 VEGTKASLKRLDMDYVDVIYCHRPDTS--------TPIEETVRAMNYVIDKGW----AFYWGTSEWSAQQITEAWGIAER 200 (360)
Q Consensus 133 ~~~~~~sL~~Lg~d~iDl~~lH~p~~~--------~~~~~~~~al~~L~~~G~----ir~iGvs~~~~~~l~~~~~~~~~ 200 (360)
.+ .-+.|+..|+++|- +-|+..++. ..++.+++.++.+++.|. |..+.+...+..++.++++++.+
T Consensus 104 ~~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~ 181 (329)
T PRK13361 104 AR-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRE 181 (329)
T ss_pred HH-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 22 34556667777665 355555432 346788999999998875 23344455777888888888887
Q ss_pred cCC
Q 018137 201 LDL 203 (360)
Q Consensus 201 ~~~ 203 (360)
.|.
T Consensus 182 ~gi 184 (329)
T PRK13361 182 RGL 184 (329)
T ss_pred cCC
Confidence 763
No 27
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=78.89 E-value=52 Score=30.04 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=13.5
Q ss_pred hchhhHHHhcCCeEEEecc
Q 018137 223 AEYLPLYSNYGIGLTTWSP 241 (360)
Q Consensus 223 ~~~l~~~~~~gi~vi~~~p 241 (360)
.++.+.|+++||.++-..+
T Consensus 137 ~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 137 DELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred HHHHHHHHHcCCcEEEEeC
Confidence 3577788888888776554
No 28
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=77.91 E-value=54 Score=29.74 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=73.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEecccC-----------CCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCC
Q 018137 56 FGNQLDVKEAKSLLQCCRDHGVNFFDNAEV-----------YANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPND 124 (360)
Q Consensus 56 ~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~-----------Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~ 124 (360)
.+...+.++..++++.-.+.||..++.... |..-..++.+.+..+.. +..++.+..-.++
T Consensus 15 ~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~--~~~~~~~~~~~~~------- 85 (263)
T cd07943 15 VRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL--KQAKLGVLLLPGI------- 85 (263)
T ss_pred CCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc--cCCEEEEEecCCc-------
Confidence 344577899999999999999999999721 22223456666655542 3333332221100
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeecc---CCCCHHHHHHHHHHHhhc
Q 018137 125 KGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGT---SEWSAQQITEAWGIAERL 201 (360)
Q Consensus 125 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGv---s~~~~~~l~~~~~~~~~~ 201 (360)
...+. ++..++ .|+|.+-++.- ..+.....+..+..++.|+--.+.+ +.++++.+.++.+.+.+.
T Consensus 86 --~~~~~----i~~a~~-~g~~~iri~~~-----~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (263)
T cd07943 86 --GTVDD----LKMAAD-LGVDVVRVATH-----CTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESY 153 (263)
T ss_pred --cCHHH----HHHHHH-cCCCEEEEEec-----hhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHc
Confidence 12233 444443 36666555432 2233456778888888887555553 356677777766666554
Q ss_pred C
Q 018137 202 D 202 (360)
Q Consensus 202 ~ 202 (360)
|
T Consensus 154 G 154 (263)
T cd07943 154 G 154 (263)
T ss_pred C
Confidence 4
No 29
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=77.87 E-value=20 Score=32.44 Aligned_cols=104 Identities=12% Similarity=-0.046 Sum_probs=65.7
Q ss_pred HHHHcCceeeecc-CCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccccc
Q 018137 171 YVIDKGWAFYWGT-SEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTG 249 (360)
Q Consensus 171 ~L~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g 249 (360)
+-.++|+. .+|+ ++.....+.+++..+. +++.++-.++++++... -..++..++..|+..+..-|-..
T Consensus 5 ~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G----~D~v~iD~EHg~~~~~~-~~~~~~a~~~~g~~~~VRvp~~~----- 73 (249)
T TIGR03239 5 QDLLARET-LIGCWSALGNPITTEVLGLAG----FDWLLLDGEHAPNDVLT-FIPQLMALKGSASAPVVRPPWNE----- 73 (249)
T ss_pred HHHHcCCc-eEEEEEcCCCcHHHHHHHhcC----CCEEEEecccCCCCHHH-HHHHHHHHhhcCCCcEEECCCCC-----
Confidence 33445664 3552 3444445556555443 78889999999998765 34567777888888777754321
Q ss_pred cccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHh
Q 018137 250 KYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMK 329 (360)
Q Consensus 250 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~ 329 (360)
...++.+|..+....++|-..+.++.++.++
T Consensus 74 -------------------------------------------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 74 -------------------------------------------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred -------------------------------------------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHH
Confidence 1234555655555557777778888888777
Q ss_pred hcccC
Q 018137 330 AIDVI 334 (360)
Q Consensus 330 a~~~~ 334 (360)
++.+.
T Consensus 105 a~kyp 109 (249)
T TIGR03239 105 ATRYP 109 (249)
T ss_pred HcCCC
Confidence 77653
No 30
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=77.84 E-value=25 Score=32.25 Aligned_cols=106 Identities=11% Similarity=-0.045 Sum_probs=67.3
Q ss_pred HHHHHHcCceeeec-cCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccc
Q 018137 169 MNYVIDKGWAFYWG-TSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVL 247 (360)
Q Consensus 169 l~~L~~~G~ir~iG-vs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L 247 (360)
|.+..++|+.. +| ........+.+++..+. +++.++-.++++++... ...++..++..|+..+..-|-..
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~G----fD~v~iD~EHg~~~~~~-l~~~i~a~~~~g~~~lVRvp~~~--- 79 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSG----YDWLLIDGEHAPNTIQD-LYHQLQAIAPYASQPVIRPVEGS--- 79 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcC----CCEEEEccccCCCCHHH-HHHHHHHHHhcCCCeEEECCCCC---
Confidence 44555567753 44 23444445555555443 77888999999998765 34567788888888777654221
Q ss_pred cccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHH
Q 018137 248 TGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQEN 327 (360)
Q Consensus 248 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en 327 (360)
...++.+|..+.-..++|-..+.++.++.
T Consensus 80 ---------------------------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~ 108 (267)
T PRK10128 80 ---------------------------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQV 108 (267)
T ss_pred ---------------------------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHH
Confidence 13446666666555577777777777777
Q ss_pred HhhcccC
Q 018137 328 MKAIDVI 334 (360)
Q Consensus 328 ~~a~~~~ 334 (360)
+++..+.
T Consensus 109 V~a~rYp 115 (267)
T PRK10128 109 VSATRYP 115 (267)
T ss_pred HHhcCCC
Confidence 7777653
No 31
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=76.05 E-value=34 Score=29.69 Aligned_cols=148 Identities=11% Similarity=0.163 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcC--CCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHH
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELG--WKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTK 137 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~--~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 137 (360)
.+.+++.++++.+++.|++..| .| ++.+..++...| ..+++++++-=. +..+.++..+.
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~---i~-----~~~l~p~m~~iG~~w~~gei~va~~~-----------~a~~~~~~~l~ 69 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIE---LI-----EKGLMAGMGVVGKLFEDGELFLPHVM-----------MSADAMLAGIK 69 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHH---HH-----HHHHHHHHHHHHHHHcCCCccHHHHH-----------HHHHHHHHHHH
Confidence 4678999999999999987665 44 455555555322 123444442221 33444555555
Q ss_pred HHHHhhCCC----ccceEEecCCC-CCCCHHHHHHHHHHHHHcCc-eeeeccCCCCHHHHHHHHHHHhhcCCCCceeecc
Q 018137 138 ASLKRLDMD----YVDVIYCHRPD-TSTPIEETVRAMNYVIDKGW-AFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQP 211 (360)
Q Consensus 138 ~sL~~Lg~d----~iDl~~lH~p~-~~~~~~~~~~al~~L~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~ 211 (360)
.-...+..+ .---+++-.+. +...+. ..=.-.-|+..|. |.++|. +-+++.+.+++.. .+|+++.+
T Consensus 70 ~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG-~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~------~~pd~v~l 141 (197)
T TIGR02370 70 VLTPEMEKAVETEVLGKVVCGVAEGDVHDIG-KNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKK------EKPLMLTG 141 (197)
T ss_pred HHHHHhhccccCCCCCeEEEEeCCCchhHHH-HHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHH------cCCCEEEE
Confidence 544445421 11122333222 222222 2222234567786 677885 4555655555443 34777666
Q ss_pred cccccccchhhhchhhHHHhcCC
Q 018137 212 EYNMLSRHKVEAEYLPLYSNYGI 234 (360)
Q Consensus 212 ~~n~~~~~~~~~~~l~~~~~~gi 234 (360)
.+........-.++++.+++.|.
T Consensus 142 S~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 142 SALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred ccccccCHHHHHHHHHHHHHcCC
Confidence 66544433323567778888753
No 32
>PLN02428 lipoic acid synthase
Probab=75.86 E-value=68 Score=30.63 Aligned_cols=165 Identities=13% Similarity=0.189 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccc----CCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAE----VYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVE 134 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~----~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~ 134 (360)
..+.++..++...+.+.|++++=-.. .|-++.++ .+-+.++.....-..+.|..=. + ++-. .
T Consensus 129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~L~------p---df~~---d- 194 (349)
T PLN02428 129 PPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEALV------P---DFRG---D- 194 (349)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEEeC------c---cccC---C-
Confidence 34566777888888889998664321 23333333 3333343311001123333311 1 0110 1
Q ss_pred HHHHHHHhhCCCccceEEecCCCC-----------CCCHHHHHHHHHHHHHc--Cceee----eccCCCCHHHHHHHHHH
Q 018137 135 GTKASLKRLDMDYVDVIYCHRPDT-----------STPIEETVRAMNYVIDK--GWAFY----WGTSEWSAQQITEAWGI 197 (360)
Q Consensus 135 ~~~~sL~~Lg~d~iDl~~lH~p~~-----------~~~~~~~~~al~~L~~~--G~ir~----iGvs~~~~~~l~~~~~~ 197 (360)
++.|++|.-.-+|. +-|+++. ....++.++.++.+++. |..-. +|+ .-+.+++.+.++.
T Consensus 195 --~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~ 270 (349)
T PLN02428 195 --LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMED 270 (349)
T ss_pred --HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHH
Confidence 33444443333666 3477654 12467788999999887 76532 577 5788888888888
Q ss_pred HhhcCCCCceeecc-cc----------cccccchhhhchhhHHHhcCCeEEEeccccc
Q 018137 198 AERLDLVGPIVEQP-EY----------NMLSRHKVEAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 198 ~~~~~~~~~~~~q~-~~----------n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
.+..+ ++++.+ +| +-+-....-..+-+++.+.|...++.+||-.
T Consensus 271 Lrelg---vd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 271 LRAAG---VDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHcC---CCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 88766 332222 11 1111111112455677788888888888764
No 33
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=74.90 E-value=60 Score=29.58 Aligned_cols=106 Identities=15% Similarity=0.109 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCce
Q 018137 128 SRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPI 207 (360)
Q Consensus 128 ~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 207 (360)
+.+.+.+...+. ..-|-|+||+=.= +......+.+...++.+++.-.+ -|-+-+++++.++++++.+. | .+.
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~--G--~~i 94 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAK--G--PPL 94 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCC--C--CCE
Confidence 444555544443 3668999998753 22222234455666666554222 36777999999999988754 1 234
Q ss_pred eecccccccccchhhhchhhHHHhcCCeEEEecccccc
Q 018137 208 VEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 208 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
+|-+... .. . ..++++.++++|+.++....-..|
T Consensus 95 INsIs~~--~~-~-~~~~~~l~~~~g~~vv~m~~~~~g 128 (261)
T PRK07535 95 INSVSAE--GE-K-LEVVLPLVKKYNAPVVALTMDDTG 128 (261)
T ss_pred EEeCCCC--Cc-c-CHHHHHHHHHhCCCEEEEecCCCC
Confidence 4433321 11 1 235789999999999987543333
No 34
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=72.74 E-value=63 Score=28.00 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcC--CCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHH
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELG--WKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTK 137 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~--~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 137 (360)
.|.+++.+++..+++.|+...| .| ++++..++...| ..+++++++-=. +..+.++..+.
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~---i~-----~~~l~p~m~~vG~~w~~~~i~va~e~-----------~as~~~~~~l~ 68 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQD---II-----EEGLAPGMDIVGDKYEEGEIFVPELL-----------MAADAMKAGLD 68 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH---HH-----HHHHHHHHHHHHHHHccCCeeHHHHH-----------HHHHHHHHHHH
Confidence 4678899999999999986554 34 444555554322 123444444322 22333444444
Q ss_pred HHHHhhCCCc---cceEEecCCC-CCCCHHHHHHHHHHHHHcCc-eeeeccCCCCHHHHHHHHHHHhhcCCCCceeeccc
Q 018137 138 ASLKRLDMDY---VDVIYCHRPD-TSTPIEETVRAMNYVIDKGW-AFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPE 212 (360)
Q Consensus 138 ~sL~~Lg~d~---iDl~~lH~p~-~~~~~~~~~~al~~L~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~ 212 (360)
.-...+.... ---+++-.+. +...+. ..=.-.-|+..|+ |.++| .+.+++.+.++... .+|+++-+.
T Consensus 69 ~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG-~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~------~~~d~v~lS 140 (201)
T cd02070 69 LLKPLLGKSKSAKKGKVVIGTVEGDIHDIG-KNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKE------HKPDILGLS 140 (201)
T ss_pred HHHHHHhhcCCCCCCeEEEEecCCccchHH-HHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHH------cCCCEEEEe
Confidence 3333443221 1123333332 222222 1112224567776 46677 55666666665543 346666555
Q ss_pred ccccccchhhhchhhHHHhcC
Q 018137 213 YNMLSRHKVEAEYLPLYSNYG 233 (360)
Q Consensus 213 ~n~~~~~~~~~~~l~~~~~~g 233 (360)
.+.-.....-.++++.+++.+
T Consensus 141 ~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 141 ALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred ccccccHHHHHHHHHHHHHCC
Confidence 543333222345667777664
No 35
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=72.66 E-value=86 Score=29.52 Aligned_cols=121 Identities=16% Similarity=0.210 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCC----------------C--hHHHHHHHHHHhcCCCCCcEEEEeccccCCC
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYAN----------------G--RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQ 120 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----------------G--~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~ 120 (360)
.++.+.-.++.++|-+.|+-+|=|--.+.. | .-..+|-...+. ...++++|=+
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~----~kPiIlSTGm----- 156 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKK----GKPIILSTGM----- 156 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhc----CCCEEEEccc-----
Confidence 567788889999999999998865433321 1 012333333322 2356666655
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC-CCHHHH-HHHHHHHHHcCceeeeccCCCCHHHHHHHHHHH
Q 018137 121 GPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS-TPIEET-VRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIA 198 (360)
Q Consensus 121 ~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~-~~~~~~-~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~ 198 (360)
.+-+.|.++++...++=. .|+.+||+...+ .+.+++ +.+|..|.+.= ---||+|.|+..-+.-+...+
T Consensus 157 ------a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~AvA 226 (347)
T COG2089 157 ------ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAVA 226 (347)
T ss_pred ------ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHHH
Confidence 566778887776554433 399999997543 345543 45565555543 445899999988655554443
No 36
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=72.34 E-value=86 Score=29.39 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCCC------hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYANG------RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHI 132 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G------~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i 132 (360)
.++.++..++++.+.+.|++.+.-. | | .-.+++-. +++.+ .-.++.|+|-.. . +
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~~-i~~~~-~~~~i~itTNG~-----------l---l 107 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIAA-LAALP-GIRDLALTTNGY-----------L---L 107 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHHH-HHhcC-CCceEEEEcCch-----------h---H
Confidence 4778999999999999999887643 3 2 11222222 33321 123566666631 1 1
Q ss_pred HHHHHHHHHhhCCCccceEEecCCCC--------CCCHHHHHHHHHHHHHcCc----eeeeccCCCCHHHHHHHHHHHhh
Q 018137 133 VEGTKASLKRLDMDYVDVIYCHRPDT--------STPIEETVRAMNYVIDKGW----AFYWGTSEWSAQQITEAWGIAER 200 (360)
Q Consensus 133 ~~~~~~sL~~Lg~d~iDl~~lH~p~~--------~~~~~~~~~al~~L~~~G~----ir~iGvs~~~~~~l~~~~~~~~~ 200 (360)
.+ .-+.|...|.+.|- +-||..++ ...+++++++++.+++.|. |..+.+...+.+++.++.+++..
T Consensus 108 ~~-~~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~ 185 (331)
T PRK00164 108 AR-RAAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKD 185 (331)
T ss_pred HH-HHHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHh
Confidence 12 22345555655442 44555433 2357889999999999885 33444456677888898888887
Q ss_pred cCCCCceeecccccccccch--------hhhchhhHHHhcCCeE
Q 018137 201 LDLVGPIVEQPEYNMLSRHK--------VEAEYLPLYSNYGIGL 236 (360)
Q Consensus 201 ~~~~~~~~~q~~~n~~~~~~--------~~~~~l~~~~~~gi~v 236 (360)
.+. + +.-++|.++.... ...++++.++++|+.+
T Consensus 186 ~gv-~--v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (331)
T PRK00164 186 RGI-Q--LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTL 226 (331)
T ss_pred CCC-e--EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcc
Confidence 662 2 2233344332210 1234666677765544
No 37
>PRK08392 hypothetical protein; Provisional
Probab=72.15 E-value=68 Score=28.11 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCCeEecccCCCCCh---HHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHH
Q 018137 64 EAKSLLQCCRDHGVNFFDNAEVYANGR---AEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASL 140 (360)
Q Consensus 64 ~~~~~l~~A~~~Gin~~DTA~~Yg~G~---sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 140 (360)
...++++.|.+.|++.|=.+++..... -+..+-+. .+.. .+.++.| +.|.-. +..++. ....++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i-~~l~-~~~~i~i--l~GiE~------~~~~~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEI-RQWG-EESEIVV--LAGIEA------NITPNG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHH-HHHh-hccCceE--EEeEEe------eecCCc-chhHHHHH
Confidence 466889999999999998777753211 11222221 1111 1122322 222100 011111 12333444
Q ss_pred HhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeecc-C---C----CCHHHHHHHHHHHhhcCCCCceeeccc
Q 018137 141 KRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGT-S---E----WSAQQITEAWGIAERLDLVGPIVEQPE 212 (360)
Q Consensus 141 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGv-s---~----~~~~~l~~~~~~~~~~~~~~~~~~q~~ 212 (360)
++ .||+ +.-+|........++-.+.+.++.+.|.+.-+|= . . .....+.++++.+.+.|. .+.+|- .
T Consensus 84 ~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~-~lEiNt-~ 158 (215)
T PRK08392 84 KK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGK-AFEISS-R 158 (215)
T ss_pred hh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCC-EEEEeC-C
Confidence 43 4666 6778943332334566788888888888777662 1 0 112466777777777663 334442 1
Q ss_pred ccccccchhhhchhhHHHhcCCeEEE
Q 018137 213 YNMLSRHKVEAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 213 ~n~~~~~~~~~~~l~~~~~~gi~vi~ 238 (360)
+ +.+ ...++..|++.|+.++.
T Consensus 159 ~----~~p-~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 159 Y----RVP-DLEFIRECIKRGIKLTF 179 (215)
T ss_pred C----CCC-CHHHHHHHHHcCCEEEE
Confidence 1 122 34689999999977543
No 38
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=71.43 E-value=94 Score=29.45 Aligned_cols=154 Identities=9% Similarity=0.068 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEecccCCCCC------hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHH
Q 018137 61 DVKEAKSLLQCCRDHGVNFFDNAEVYANG------RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVE 134 (360)
Q Consensus 61 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G------~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~ 134 (360)
+.++..+.++.+.+.|++.|-.=-..+.. ...+.+ +++++. -.+++.|.-... ...+.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~--~g~~~~l~vDaN--------~~~~~~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREA--VGPDVDLMVDAN--------GRWDLAEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHh--hCCCCEEEEECC--------CCCCHHHHHH
Confidence 46777788888889999988642211110 112223 333331 124556666652 1245544433
Q ss_pred HHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCcee-eeccCCCCHHHHHHHHHHHhhcCCCCceeecccc
Q 018137 135 GTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAF-YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEY 213 (360)
Q Consensus 135 ~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~ 213 (360)
-+++|. ..++.++..|-+.. .++.+.+|++.-.+. ..|=+.++++++.++++.. ..+++|+..
T Consensus 208 ----~~~~l~--~~~i~~iEqP~~~~----~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~------~~d~v~~k~ 271 (357)
T cd03316 208 ----LARALE--EYDLFWFEEPVPPD----DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG------AVDIIQPDV 271 (357)
T ss_pred ----HHHHhC--ccCCCeEcCCCCcc----CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC------CCCEEecCc
Confidence 334442 23556677775432 356677787775444 3445677888888877642 266777776
Q ss_pred cccccchhhhchhhHHHhcCCeEEEecc
Q 018137 214 NMLSRHKVEAEYLPLYSNYGIGLTTWSP 241 (360)
Q Consensus 214 n~~~~~~~~~~~l~~~~~~gi~vi~~~p 241 (360)
.-.---..-..+..+|+++|+.++..+.
T Consensus 272 ~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 272 TKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred cccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 5432111134678999999999887653
No 39
>PRK06740 histidinol-phosphatase; Validated
Probab=71.32 E-value=86 Score=29.65 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=58.2
Q ss_pred HHHHHHHHhhCCCccceEEecCCCC-----CC--------CH----HHHHHHHHHHHHcCceeeec-cC-----CCC---
Q 018137 134 EGTKASLKRLDMDYVDVIYCHRPDT-----ST--------PI----EETVRAMNYVIDKGWAFYWG-TS-----EWS--- 187 (360)
Q Consensus 134 ~~~~~sL~~Lg~d~iDl~~lH~p~~-----~~--------~~----~~~~~al~~L~~~G~ir~iG-vs-----~~~--- 187 (360)
..+++.|+....||+ +.-+|..+. .. .. ..-++.+.++.+.|++..|| +. ++.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 345566767777887 788897531 00 11 22457778888899888877 21 221
Q ss_pred ---HHHHHHHHHHHhhcCCCCceeecc-cc--cccccchhhhchhhHHHhcCCeEEE
Q 018137 188 ---AQQITEAWGIAERLDLVGPIVEQP-EY--NMLSRHKVEAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 188 ---~~~l~~~~~~~~~~~~~~~~~~q~-~~--n~~~~~~~~~~~l~~~~~~gi~vi~ 238 (360)
...++++++.+...|. .+.+|-- .+ ..-+.-+ ...++..|++.|+.++.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~-~lEINt~~~~r~~~~e~yP-~~~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNT-ATEINAGLYYRYPVREMCP-SPLFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCC-EEEEECccccCCCCCCCCc-CHHHHHHHHHCCCeEEE
Confidence 1356666677766663 3444432 11 1111111 24678899999988644
No 40
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=71.21 E-value=12 Score=33.70 Aligned_cols=118 Identities=16% Similarity=0.260 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHH--------------------HHHHhcCCCCCcEEEEeccccC
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMG--------------------QAIRELGWKRSDIVVSTKIFWG 118 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG--------------------~al~~~~~~R~~v~i~tK~~~~ 118 (360)
.++.++-.++.++|-+.||.||=|...- .|-+++- +.+++ ...-++|+|=.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~---~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~---tgkPvIlSTG~--- 122 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDE---ESVDFLEELGVPAYKIASGDLTNLPLLEYIAK---TGKPVILSTGM--- 122 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SH---HHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT---T-S-EEEE-TT---
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCH---HHHHHHHHcCCCEEEeccccccCHHHHHHHHH---hCCcEEEECCC---
Confidence 5788999999999999999999765432 1111111 11111 12335666554
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC-CCHHHH-HHHHHHHHHcCceeeeccCCCCHHHHHHHHH
Q 018137 119 GQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS-TPIEET-VRAMNYVIDKGWAFYWGTSEWSAQQITEAWG 196 (360)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~-~~~~~~-~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~ 196 (360)
.+.+.|.++++...++-+ -|+.+||+...+ .+.++. +..+..|++.=- --||.|.|+.....-+..
T Consensus 123 --------stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~~A 190 (241)
T PF03102_consen 123 --------STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAPIAA 190 (241)
T ss_dssp ----------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHHHHH
T ss_pred --------CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHHHHH
Confidence 567788887776644443 689999997543 333432 566666665422 567999998754444433
Q ss_pred H
Q 018137 197 I 197 (360)
Q Consensus 197 ~ 197 (360)
.
T Consensus 191 v 191 (241)
T PF03102_consen 191 V 191 (241)
T ss_dssp H
T ss_pred H
Confidence 3
No 41
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=70.77 E-value=59 Score=29.45 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEE-ecCCCCC-----CCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhh
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIY-CHRPDTS-----TPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAER 200 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~-lH~p~~~-----~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 200 (360)
.+.+.+.+..++.+ .-|-|+||+=. --+|+.. ..++.+...++.+++.-.+- |.+-+++++.++++++.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~g-- 96 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKAG-- 96 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHhC--
Confidence 46666666655554 66899999964 3445431 11233556666666552332 788899999999998864
Q ss_pred cCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccc
Q 018137 201 LDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLA 243 (360)
Q Consensus 201 ~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~ 243 (360)
.+.+|-+ +.... ..++++.++++|..++.+..-.
T Consensus 97 ----~~iINdi--s~~~~---~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 97 ----ADIINDV--SGGRG---DPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred ----CCEEEeC--CCCCC---ChHHHHHHHHcCCCEEEECcCC
Confidence 1333332 22211 1367899999999999886433
No 42
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=67.22 E-value=1e+02 Score=28.13 Aligned_cols=128 Identities=16% Similarity=0.268 Sum_probs=69.8
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHH
Q 018137 56 FGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEG 135 (360)
Q Consensus 56 ~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~ 135 (360)
.+...+.++..++++.-.+.||..|+... ...+..+.-.-+.+...+ ....++... ....+++.++
T Consensus 15 ~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~-P~~~~~~~~~~~~l~~~~-~~~~v~~~~------------r~~~~di~~a 80 (262)
T cd07948 15 ANAFFDTEDKIEIAKALDAFGVDYIELTS-PAASPQSRADCEAIAKLG-LKAKILTHI------------RCHMDDARIA 80 (262)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEC-CCCCHHHHHHHHHHHhCC-CCCcEEEEe------------cCCHHHHHHH
Confidence 34456779999999999999999999863 222323333334444432 122232111 1344455554
Q ss_pred HHHHHHhhCCCccceEEecCC-----CCCCCHHH----HHHHHHHHHHcCceeeecc---CCCCHHHHHHHHHHHhhcC
Q 018137 136 TKASLKRLDMDYVDVIYCHRP-----DTSTPIEE----TVRAMNYVIDKGWAFYWGT---SEWSAQQITEAWGIAERLD 202 (360)
Q Consensus 136 ~~~sL~~Lg~d~iDl~~lH~p-----~~~~~~~~----~~~al~~L~~~G~ir~iGv---s~~~~~~l~~~~~~~~~~~ 202 (360)
++ .|.+.|.++.==++ ......++ +.+..+..++.|.--.+++ +..+++.+.++.+.+...|
T Consensus 81 ~~-----~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g 154 (262)
T cd07948 81 VE-----TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLG 154 (262)
T ss_pred HH-----cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcC
Confidence 43 47777776652111 01122333 4455567777887666654 2345666666666555443
No 43
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=66.72 E-value=91 Score=28.34 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEE-ecCCCCCC-CH----HHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhh
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIY-CHRPDTST-PI----EETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAER 200 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~-lH~p~~~~-~~----~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 200 (360)
++.+.+.+...+.+ +-|-|+||+=. --+|+... +. +.+...++.+++.-.+. +.+-+++++.++++++..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G-- 96 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAG-- 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC--
Confidence 55666666555544 55889999863 33454331 22 22344556666553333 678899999999988762
Q ss_pred cCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecc
Q 018137 201 LDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSP 241 (360)
Q Consensus 201 ~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~p 241 (360)
. ..+|-+ +.... ..++++.++++|..++.+..
T Consensus 97 ---~-~iINdi--sg~~~---~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 97 ---A-DIINDV--SGGSD---DPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred ---C-CEEEeC--CCCCC---ChHHHHHHHHcCCCEEEECC
Confidence 1 233333 22221 13678999999999999654
No 44
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=66.42 E-value=61 Score=28.55 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCC-CChHHHH---HHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYA-NGRAEEI---MGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVE 134 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-~G~sE~~---lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~ 134 (360)
.+++++...+.+.|.++|..|+=|+..|+ .|.+.+- +-+.++ + -+-.|..-|. .+.+...+
T Consensus 128 ~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~------~--~v~IKaaGGi-------rt~~~a~~ 192 (211)
T TIGR00126 128 LLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG------D--TIGVKASGGV-------RTAEDAIA 192 (211)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc------c--CCeEEEeCCC-------CCHHHHHH
Confidence 36678888999999999999999998886 4544433 334432 2 2345552111 47888999
Q ss_pred HHHHHHHhhCCCcc
Q 018137 135 GTKASLKRLDMDYV 148 (360)
Q Consensus 135 ~~~~sL~~Lg~d~i 148 (360)
.++.--.|+|+++.
T Consensus 193 ~i~aGa~riGts~~ 206 (211)
T TIGR00126 193 MIEAGASRIGASAG 206 (211)
T ss_pred HHHHhhHHhCcchH
Confidence 99999999998753
No 45
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.99 E-value=47 Score=29.86 Aligned_cols=106 Identities=10% Similarity=0.019 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcC-ceeeeccCCCCHHHHHHHHHHHhhcCCCC
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKG-WAFYWGTSEWSAQQITEAWGIAERLDLVG 205 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~~~ 205 (360)
++.+...+ +-+.|..+|+++|.+-..-.+......++.++.++.+.+.+ .++...++.-....++.+.+. +
T Consensus 16 ~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~----g--- 87 (265)
T cd03174 16 FSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA----G--- 87 (265)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC----C---
Confidence 56665555 44558889999998877655432222345678888888888 566556554444444444432 2
Q ss_pred ceeecccccccc--------cch-----hhhchhhHHHhcCCeEEEec
Q 018137 206 PIVEQPEYNMLS--------RHK-----VEAEYLPLYSNYGIGLTTWS 240 (360)
Q Consensus 206 ~~~~q~~~n~~~--------~~~-----~~~~~l~~~~~~gi~vi~~~ 240 (360)
...+++.+..-+ +.. .-...+.+++++|+.+...-
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 334444433321 110 01345678888888766544
No 46
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=64.40 E-value=17 Score=32.11 Aligned_cols=104 Identities=21% Similarity=0.167 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEec
Q 018137 161 PIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWS 240 (360)
Q Consensus 161 ~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~ 240 (360)
..++..++|..|+-+|.+. | .-.+-.|..++-..|+..|+ . .|.|+.... ..+++...-+.|..++.-+
T Consensus 74 eve~L~~~l~~l~~d~iv~--G-aI~s~yqk~rve~lc~~lGl---~----~~~PLWg~d-~~ell~e~~~~Gf~~~Iv~ 142 (223)
T COG2102 74 EVEELKEALRRLKVDGIVA--G-AIASEYQKERVERLCEELGL---K----VYAPLWGRD-PEELLEEMVEAGFEAIIVA 142 (223)
T ss_pred hHHHHHHHHHhCcccEEEE--c-hhhhHHHHHHHHHHHHHhCC---E----EeecccCCC-HHHHHHHHHHcCCeEEEEE
Confidence 4667778888777444322 2 02333445555556666663 1 244554433 2456777777888887777
Q ss_pred ccccccccccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHH
Q 018137 241 PLASGVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLA 298 (360)
Q Consensus 241 pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~ 298 (360)
.-+.|+- ..+.+. ++ ..+.++.+..+.++||+.|+
T Consensus 143 Vsa~gL~-~~~lGr------~i----------------~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 143 VSAEGLD-ESWLGR------RI----------------DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred EeccCCC-hHHhCC------cc----------------CHHHHHHHHHHHHhcCCCcc
Confidence 7777642 111110 11 12234688888899998764
No 47
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=63.60 E-value=1.1e+02 Score=27.52 Aligned_cols=157 Identities=12% Similarity=0.104 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEecccCCCCC-hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHH
Q 018137 61 DVKEAKSLLQCCRDHGVNFFDNAEVYANG-RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKAS 139 (360)
Q Consensus 61 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G-~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~s 139 (360)
+.++..+.++.+++.|++.|-.=- |.. ..+.-.=+++++. -.+++-|.-... ...+.+...+-+ +.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~~~~~d~~~v~~vr~~--~g~~~~l~vDan--------~~~~~~~a~~~~-~~ 151 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GRDPARDVAVVAALREA--VGDDAELRVDAN--------RGWTPKQAIRAL-RA 151 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CCCHHHHHHHHHHHHHh--cCCCCEEEEeCC--------CCcCHHHHHHHH-HH
Confidence 346677778888899999887532 211 1122222344431 123455544431 124555444322 34
Q ss_pred HHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCcee-eeccCCCCHHHHHHHHHHHhhcCCCCceeeccccccccc
Q 018137 140 LKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAF-YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSR 218 (360)
Q Consensus 140 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~ 218 (360)
|+.+ ++.++..|-+..+ ++.+.+|++.-.+. ..|=+.++..++.++++. ..++++|+..+..--
T Consensus 152 l~~~-----~i~~iEeP~~~~d----~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~------~~~d~v~~k~~~~GG 216 (265)
T cd03315 152 LEDL-----GLDYVEQPLPADD----LEGRAALARATDTPIMADESAFTPHDAFRELAL------GAADAVNIKTAKTGG 216 (265)
T ss_pred HHhc-----CCCEEECCCCccc----HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh------CCCCEEEEecccccC
Confidence 4444 4455676654332 46677777765544 345567788888777654 236677777664432
Q ss_pred chhhhchhhHHHhcCCeEEEecccccc
Q 018137 219 HKVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 219 ~~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
-..-..+...|+++|+.++..+.+.++
T Consensus 217 i~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 217 LTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHHHHHHcCCcEEecCccchH
Confidence 111246788999999999988766554
No 48
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=63.29 E-value=1.3e+02 Score=28.18 Aligned_cols=127 Identities=13% Similarity=0.094 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEecccCCCCCh----HHHHHHHHH---HhcCCCCCcEEEEeccccCCCCCCCCCCCHHH
Q 018137 60 LDVKEAKSLLQCCRDH-GVNFFDNAEVYANGR----AEEIMGQAI---RELGWKRSDIVVSTKIFWGGQGPNDKGLSRKH 131 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~G~----sE~~lG~al---~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~ 131 (360)
.+.++..++++...++ ||+-+-- -| |+ +.+.+-+.+ ++.+ .-..+.+.|+... ..+..
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~Vil---SG-GDPl~~~~~~L~~ll~~l~~i~-~v~~iri~Tr~~v---------~~p~r 184 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVIL---TG-GDPLVLSPRRLGDIMARLAAID-HVKIVRFHTRVPV---------ADPAR 184 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEE---eC-CCcccCCHHHHHHHHHHHHhCC-CccEEEEeCCCcc---------cChhh
Confidence 4567788888877655 8875421 11 21 122333333 3322 1234677787621 22233
Q ss_pred HHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeee------ccCCCCHHHHHHHHHHHhhcCC
Q 018137 132 IVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYW------GTSEWSAQQITEAWGIAERLDL 203 (360)
Q Consensus 132 i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~i------Gvs~~~~~~l~~~~~~~~~~~~ 203 (360)
+...+-+.|++.|. . ..+.+|...+..-.+++.++++.|++.|..-.. |+ |.+.+.+.++.+.+...|.
T Consensus 185 it~ell~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv 259 (321)
T TIGR03822 185 VTPALIAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRI 259 (321)
T ss_pred cCHHHHHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCC
Confidence 44444456666663 2 357788754443357889999999999963221 43 6777788888877766664
No 49
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=62.97 E-value=1.6e+02 Score=28.81 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEE---EeccccCCCCCCCCCCCHHHHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVV---STKIFWGGQGPNDKGLSRKHIVEG 135 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i---~tK~~~~~~~~~~~~~~~~~i~~~ 135 (360)
..+.+.-.+=++.|++.|-..+-==... |+-.++--+.|+..+++=..|=| .-+. ........+.+.+.+.+.
T Consensus 73 ~~d~~~E~~K~~~A~~~GADtiMDLStg--gdl~~iR~~il~~s~vpvGTVPiYqa~~~~--~~k~~~~~~mt~d~~~~~ 148 (431)
T PRK13352 73 ISDIEEELEKAKVAVKYGADTIMDLSTG--GDLDEIRRAIIEASPVPVGTVPIYQAAVEA--ARKYGSVVDMTEDDLFDV 148 (431)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEeeccCC--CCHHHHHHHHHHcCCCCCcChhHHHHHHHH--HhcCCChhhCCHHHHHHH
Confidence 3455666677899999998755322223 33333333444433222111100 0000 000012345888888888
Q ss_pred HHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccc
Q 018137 136 TKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNM 215 (360)
Q Consensus 136 ~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~ 215 (360)
+++..+ |=+|++-+|.- =..+.++.++++| |..|+-+-...-+..++..-+ .=|+
T Consensus 149 ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~n~------------~ENP 203 (431)
T PRK13352 149 IEKQAK----DGVDFMTIHCG-------VTRETLERLKKSG--RIMGIVSRGGSFLAAWMLHNN------------KENP 203 (431)
T ss_pred HHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcC--CccCeecCCHHHHHHHHHHcC------------CcCc
Confidence 888776 45899999973 2468888999988 556776666666666554311 2344
Q ss_pred cccchhhhchhhHHHhcCCeEEE
Q 018137 216 LSRHKVEAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 216 ~~~~~~~~~~l~~~~~~gi~vi~ 238 (360)
+... | ..+++.|+++++.+--
T Consensus 204 lye~-f-D~lLeI~~~yDVtlSL 224 (431)
T PRK13352 204 LYEH-F-DYLLEILKEYDVTLSL 224 (431)
T ss_pred hHHH-H-HHHHHHHHHhCeeeec
Confidence 4332 2 4689999999999754
No 50
>PRK12928 lipoyl synthase; Provisional
Probab=62.41 E-value=1.2e+02 Score=28.21 Aligned_cols=81 Identities=9% Similarity=-0.004 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHcC---ceee---eccCCCCHHHHHHHHHHHhhcCCCCceeecc-cccc-------cccc--h-hh
Q 018137 160 TPIEETVRAMNYVIDKG---WAFY---WGTSEWSAQQITEAWGIAERLDLVGPIVEQP-EYNM-------LSRH--K-VE 222 (360)
Q Consensus 160 ~~~~~~~~al~~L~~~G---~ir~---iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~-~~n~-------~~~~--~-~~ 222 (360)
...++.++.++.+++.| .++. +|+ .-+.+++.+.++..++.+ ++.+.+ +|.. +.+. + .-
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~---~d~v~i~~Yl~p~~~~~~v~~~~~~~~f 260 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVG---CDRLTIGQYLRPSLAHLPVQRYWTPEEF 260 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcC---CCEEEEEcCCCCCccCCceeeccCHHHH
Confidence 35678889999999988 3333 477 677888888888888765 333322 3322 1111 0 11
Q ss_pred hchhhHHHhcCCeEEEeccccc
Q 018137 223 AEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 223 ~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
..+-..+.+.|...++.+||-.
T Consensus 261 ~~~~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 261 EALGQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHHHHcCCceeEecCccc
Confidence 3456677778888888888764
No 51
>PLN02389 biotin synthase
Probab=62.27 E-value=1.5e+02 Score=28.57 Aligned_cols=123 Identities=11% Similarity=0.130 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEecccCC-C-CC--hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHH
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFDNAEVY-A-NG--RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEG 135 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~DTA~~Y-g-~G--~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~ 135 (360)
++.++..+.++.+.+.|++.|--...+ + .+ ..-+.+-+.++.. ....+.|+...+. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i--k~~~l~i~~s~G~---------l~~E~l--- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI--RGMGMEVCCTLGM---------LEKEQA--- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH--hcCCcEEEECCCC---------CCHHHH---
Confidence 688999999999999999988532211 1 11 1224555666552 2223445443321 333332
Q ss_pred HHHHHHhhCCCccceEEecC-C------CCCCCHHHHHHHHHHHHHcCcee----eeccCCCCHHHHHHHHHHHhh
Q 018137 136 TKASLKRLDMDYVDVIYCHR-P------DTSTPIEETVRAMNYVIDKGWAF----YWGTSEWSAQQITEAWGIAER 200 (360)
Q Consensus 136 ~~~sL~~Lg~d~iDl~~lH~-p------~~~~~~~~~~~al~~L~~~G~ir----~iGvs~~~~~~l~~~~~~~~~ 200 (360)
+.|+.-|+|.+-.- |.. + -....+++.+++++.+++.|.-- -+|+ ..+.+++.+.+...+.
T Consensus 182 --~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt~edrv~~l~~Lr~ 253 (379)
T PLN02389 182 --AQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL-GEAEEDRVGLLHTLAT 253 (379)
T ss_pred --HHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC-CCCHHHHHHHHHHHHh
Confidence 34556676654331 111 1 01235778889999999888522 1455 4555555555554443
No 52
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=62.19 E-value=1.4e+02 Score=28.03 Aligned_cols=123 Identities=16% Similarity=0.188 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCCC------hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYANG------RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHI 132 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G------~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i 132 (360)
.++.++..++++.+.+.|+..|.- .| | .-.+++.. +++.. .-.++.|.|-.. ...
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~l---tG-GEPll~~~l~~li~~-i~~~~-gi~~v~itTNG~----------ll~--- 102 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRL---TG-GEPLLRKDLVELVAR-LAALP-GIEDIALTTNGL----------LLA--- 102 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE---EC-ccccccCCHHHHHHH-HHhcC-CCCeEEEEeCch----------hHH---
Confidence 478899999999999999988763 23 3 12333333 23211 012577777531 111
Q ss_pred HHHHHHHHHhhCCCccceEEecCCCC---------CCCHHHHHHHHHHHHHcCce--e--eeccCCCCHHHHHHHHHHHh
Q 018137 133 VEGTKASLKRLDMDYVDVIYCHRPDT---------STPIEETVRAMNYVIDKGWA--F--YWGTSEWSAQQITEAWGIAE 199 (360)
Q Consensus 133 ~~~~~~sL~~Lg~d~iDl~~lH~p~~---------~~~~~~~~~al~~L~~~G~i--r--~iGvs~~~~~~l~~~~~~~~ 199 (360)
..-+.|.+.|.++|- +-+|..++ ...+++++++++.+++.|.- + .+.+.+.+.+++.++++++.
T Consensus 103 --~~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~ 179 (334)
T TIGR02666 103 --RHAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAK 179 (334)
T ss_pred --HHHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHH
Confidence 123456666765443 33454432 12578899999999998852 2 23345677888889888888
Q ss_pred hcCC
Q 018137 200 RLDL 203 (360)
Q Consensus 200 ~~~~ 203 (360)
..++
T Consensus 180 ~~gv 183 (334)
T TIGR02666 180 ERGV 183 (334)
T ss_pred hcCC
Confidence 7773
No 53
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=61.69 E-value=59 Score=30.02 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=33.7
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHH
Q 018137 285 RLKPIADELGV------PLAQLAIAWCASNPNVSSVITGATKESQIQENM 328 (360)
Q Consensus 285 ~l~~la~~~~~------s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~ 328 (360)
+|.++|+++|. ++.++-..|.-.... ..+..|+|+|+.+-+.+
T Consensus 225 rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 225 RLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHHHHHH
Confidence 77888888763 678888899987654 47999999999776543
No 54
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=61.33 E-value=1.6e+02 Score=28.54 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEE---EeccccCCCCCCCCCCCHHHHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVV---STKIFWGGQGPNDKGLSRKHIVEG 135 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i---~tK~~~~~~~~~~~~~~~~~i~~~ 135 (360)
..+.+.-.+-++.|++.|-..+-==...| +-.++=-+.|+..+++=..|=| ..+. .....+.+.+.+.+.
T Consensus 73 ~~d~~~E~~K~~~A~~~GADtiMDLStGg--dl~~iR~~il~~s~vpvGTVPiYqa~~~~-----~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 73 TSDIEEEVEKALIAIKYGADTVMDLSTGG--DLDEIRKAILDAVPVPVGTVPIYQAAEKV-----HGAVEDMDEDDMFRA 145 (423)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEeeccCCC--CHHHHHHHHHHcCCCCccCccHHHHHHHh-----cCChhhCCHHHHHHH
Confidence 34566666778999999987553222333 3333333344433322111100 0000 012345888888888
Q ss_pred HHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccc
Q 018137 136 TKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNM 215 (360)
Q Consensus 136 ~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~ 215 (360)
+++..+ |-+|++-+|.- =..+.++.|+++| |..|+-+-...-+..++..-+ .=|+
T Consensus 146 ie~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~~------------~ENP 200 (423)
T TIGR00190 146 IEKQAK----DGVDFMTIHAG-------VLLEYVERLKRSG--RITGIVSRGGAILAAWMLHHH------------KENP 200 (423)
T ss_pred HHHHHH----hCCCEEEEccc-------hhHHHHHHHHhCC--CccCeecCcHHHHHHHHHHcC------------CcCc
Confidence 888776 45889999973 2468888999988 556776666666666554321 2244
Q ss_pred cccchhhhchhhHHHhcCCeEEE
Q 018137 216 LSRHKVEAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 216 ~~~~~~~~~~l~~~~~~gi~vi~ 238 (360)
+..+ | ..+++.|+++++.+.-
T Consensus 201 lye~-f-D~lLeI~~~yDVtlSL 221 (423)
T TIGR00190 201 LYKN-F-DYILEIAKEYDVTLSL 221 (423)
T ss_pred hHHH-H-HHHHHHHHHhCeeeec
Confidence 4332 2 4689999999998753
No 55
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=60.77 E-value=76 Score=29.35 Aligned_cols=105 Identities=8% Similarity=0.028 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCc
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGP 206 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~ 206 (360)
++.+.. ..+-+.|.++|+++|.+-.+++|...-...+.++.+..+.+...++...+. .+...++.+.+. | ++.
T Consensus 23 ~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g-~~~ 95 (287)
T PRK05692 23 IPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----G-ADE 95 (287)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----C-CCE
Confidence 555544 456667999999999998666664332333346666666554445555554 467777776654 1 111
Q ss_pred eeeccccccc------ccch-----hhhchhhHHHhcCCeEEE
Q 018137 207 IVEQPEYNML------SRHK-----VEAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 207 ~~~q~~~n~~------~~~~-----~~~~~l~~~~~~gi~vi~ 238 (360)
..+-+..|-. .... .-.+.+++++++|+.+.+
T Consensus 96 v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 96 VAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1111122111 1111 013568899999998864
No 56
>PRK06361 hypothetical protein; Provisional
Probab=60.14 E-value=1.2e+02 Score=26.41 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHcCCCeEecccCCCCChHHHHH---HHHHHhcC-CCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHH
Q 018137 64 EAKSLLQCCRDHGVNFFDNAEVYANGRAEEIM---GQAIRELG-WKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKAS 139 (360)
Q Consensus 64 ~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~l---G~al~~~~-~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~s 139 (360)
...++++.|.+.|+..|=-+++.....-...+ -+..++.. ...=+++...=+.+ ...+. ...+.+.
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~---------~~~~~-~~~~~~~ 80 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTH---------VPPKL-IPKLAKK 80 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcc---------cCchh-hchHHHH
Confidence 46789999999999999888886421111111 11111110 01112333333211 11222 2334455
Q ss_pred HHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeec-cCCCCHHHHHHHHHHHhhcCCCCceeeccccccccc
Q 018137 140 LKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWG-TSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSR 218 (360)
Q Consensus 140 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iG-vs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~ 218 (360)
+++++ .|+..+|......+.. ...-..+.+.|.+.-+| ..... .++++.+...+. -+.++ .....+
T Consensus 81 ~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~----~~~~~~~~~~~~-~lEin---~~~~~~ 147 (212)
T PRK06361 81 ARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLIT----EEEAELAAENGV-FLEIT---ARKGHS 147 (212)
T ss_pred HHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhh----HHHHHHHHHcCe-EEEEE---CCCCcc
Confidence 66665 5666899543322221 11114566788877666 22222 233444444442 12222 211112
Q ss_pred chhhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHH
Q 018137 219 HKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLA 298 (360)
Q Consensus 219 ~~~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~ 298 (360)
.. ...++.++++.|+.++.-+.... | . .....+.+..++++.|.+..
T Consensus 148 ~~-~~~~l~~a~~~gi~vv~~SDaH~------------~-------------------~-d~~~~~~~~~i~~~~gl~~~ 194 (212)
T PRK06361 148 LT-NGHVARIAREAGAPLVINTDTHA------------P-------------------S-DLITYEFARKVALGAGLTEK 194 (212)
T ss_pred cc-hHHHHHHHHHhCCcEEEECCCCC------------H-------------------H-HHHHHHHHHHHHcCCCCCHH
Confidence 22 34689999999999876554331 0 0 11124678888888898888
Q ss_pred HHHHHHH
Q 018137 299 QLAIAWC 305 (360)
Q Consensus 299 q~al~~~ 305 (360)
++.--+.
T Consensus 195 ~v~~~~~ 201 (212)
T PRK06361 195 ELEEALE 201 (212)
T ss_pred HHHHHHH
Confidence 8765443
No 57
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=59.15 E-value=51 Score=29.23 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCC-CChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYA-NGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTK 137 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 137 (360)
.+++++..++.+.+.+.|..|+=|+..|+ .|.+.+.+....+..+ .+ +.-|..-|. .+.++..+-++
T Consensus 132 ~L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~---~~--~~IKasGGI-------rt~~~a~~~i~ 199 (221)
T PRK00507 132 LLTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVG---PR--VGVKASGGI-------RTLEDALAMIE 199 (221)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC---CC--ceEEeeCCc-------CCHHHHHHHHH
Confidence 47788999999999999999999999985 4677777766655422 22 233332111 56777777777
Q ss_pred HHHHhhCCCc
Q 018137 138 ASLKRLDMDY 147 (360)
Q Consensus 138 ~sL~~Lg~d~ 147 (360)
.--.|+||.+
T Consensus 200 aGA~riGtS~ 209 (221)
T PRK00507 200 AGATRLGTSA 209 (221)
T ss_pred cCcceEccCc
Confidence 7777777754
No 58
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=59.00 E-value=1.4e+02 Score=27.02 Aligned_cols=109 Identities=6% Similarity=-0.039 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCc
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGP 206 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~ 206 (360)
.+++.+.+...+.++ -|-|+||+=. .|......++....+..+++.-. .-|.|-+++++.++++++.+. | ..
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~--G--~~ 94 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQ--G--KC 94 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCC--C--Cc
Confidence 566777777777765 5999999865 24322222333333333332212 226777999999999988742 1 13
Q ss_pred eeecccccccccchhhhchhhHHHhcCCeEEEecccccc
Q 018137 207 IVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 207 ~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
.+|-+...-.+ .. ...+++.++++|..++.+..-..|
T Consensus 95 iINsIs~~~~~-e~-~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 95 VVNSINLEDGE-ER-FLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred EEEeCCCCCCc-cc-cHHHHHHHHHhCCCEEEeccCCCC
Confidence 34433322111 11 235778899999999988654333
No 59
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=58.74 E-value=2.7e+02 Score=31.55 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=54.3
Q ss_pred hhCCCccceEEecCCCCC-CCHHHHHHHHHHHHH-cCce--eeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccc
Q 018137 142 RLDMDYVDVIYCHRPDTS-TPIEETVRAMNYVID-KGWA--FYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLS 217 (360)
Q Consensus 142 ~Lg~d~iDl~~lH~p~~~-~~~~~~~~al~~L~~-~G~i--r~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~ 217 (360)
.-|-+.||+- ++.. .+-++.+..+..+.+ .-.+ --|-|-+.+++.++.+++.+. -++.+|-+..--.+
T Consensus 395 e~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~----G~~IINSIs~~~~~ 466 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQ----GKGIVNSISLKEGE 466 (1229)
T ss_pred HCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcC----CCCEEEeCCCCCCC
Confidence 5588999995 3321 233333433333332 2111 125566889999999988754 23555544432121
Q ss_pred cchhhhchhhHHHhcCCeEEEecccccc
Q 018137 218 RHKVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 218 ~~~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
. .+ .++++.|+++|..++.+.-=..|
T Consensus 467 ~-~~-~~~~~l~~kyga~vV~m~~de~G 492 (1229)
T PRK09490 467 E-KF-IEHARLVRRYGAAVVVMAFDEQG 492 (1229)
T ss_pred c-cH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 1 11 25889999999999998643334
No 60
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=58.53 E-value=27 Score=30.67 Aligned_cols=68 Identities=10% Similarity=-0.019 Sum_probs=44.3
Q ss_pred HHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccC-CCCHHHHHHHHHHHhhcCCCCceeeccccc
Q 018137 139 SLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTS-EWSAQQITEAWGIAERLDLVGPIVEQPEYN 214 (360)
Q Consensus 139 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n 214 (360)
.+..+|.|||=+.+........+.+.+-+....+ .+.++.+||. |-+++.+.++.+. ..++++|++-+
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~------~~~d~vQLHG~ 84 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSN------TSINTIQLHGT 84 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh------CCCCEEEECCC
Confidence 3456999999997555433444544443333222 3567889975 8888888887665 45889999753
No 61
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=58.34 E-value=1.3e+02 Score=28.09 Aligned_cols=125 Identities=10% Similarity=-0.008 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEec--------ccCCCCCh----HHHHHHHHHHhcC-CCCCcEEEEeccccCCCCCCCCCC
Q 018137 61 DVKEAKSLLQCCRDHGVNFFDN--------AEVYANGR----AEEIMGQAIRELG-WKRSDIVVSTKIFWGGQGPNDKGL 127 (360)
Q Consensus 61 ~~~~~~~~l~~A~~~Gin~~DT--------A~~Yg~G~----sE~~lG~al~~~~-~~R~~v~i~tK~~~~~~~~~~~~~ 127 (360)
+.++..+....+.+.|+..||- ...||.|. .-+.+.+.++... .-.+++-|+-|+..|. .
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-------~ 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-------D 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC-------C
Confidence 4577777777888899999992 12466552 2345555554310 0112467888975432 1
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHH--H-HHHHHHHHHHcCceeeeccCCC-CHHHHHHHHH
Q 018137 128 SRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIE--E-TVRAMNYVIDKGWAFYWGTSEW-SAQQITEAWG 196 (360)
Q Consensus 128 ~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~--~-~~~al~~L~~~G~ir~iGvs~~-~~~~l~~~~~ 196 (360)
+.+. ...+-+.|+..| +|.+-+|.-....... . -|+...++++.-.|.-||.... ++++..++++
T Consensus 146 ~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~ 214 (312)
T PRK10550 146 SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMA 214 (312)
T ss_pred CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHh
Confidence 1122 235555667777 6777889643221111 0 2566667776656666666543 4555555554
No 62
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=57.94 E-value=86 Score=27.62 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=56.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHHHHcCcee-eeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchh
Q 018137 148 VDVIYCHRPDTSTPIEETVRAMNYVIDKGWAF-YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYL 226 (360)
Q Consensus 148 iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l 226 (360)
.++.++-.|-+..+ ++.+.+|.+...+. ..+-|.++.+.+.++++. -..+++|+..+.+---..-..+.
T Consensus 120 ~~i~~iEeP~~~~d----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~------~~~d~~~~k~~~~GGi~~~~~i~ 189 (229)
T cd00308 120 YGLAWIEEPCAPDD----LEGYAALRRRTGIPIAADESVTTVDDALEALEL------GAVDILQIKPTRVGGLTESRRAA 189 (229)
T ss_pred cCCCeEECCCCccC----HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc------CCCCEEecCccccCCHHHHHHHH
Confidence 56777877765433 45667777776555 335566777776665543 22567777665432111124678
Q ss_pred hHHHhcCCeEEEecccccc
Q 018137 227 PLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 227 ~~~~~~gi~vi~~~pl~~G 245 (360)
.+|+++|+.++..+.+..+
T Consensus 190 ~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 190 DLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHcCCEEeecCCCCCH
Confidence 8999999999998776654
No 63
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=57.03 E-value=1.2e+02 Score=29.21 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=65.6
Q ss_pred HHHHHHHHHHH-----------HhhCCCccceEEecCCCC-----CCCHHHHHHHHHHHHH-cCceeeeccC---CCCHH
Q 018137 130 KHIVEGTKASL-----------KRLDMDYVDVIYCHRPDT-----STPIEETVRAMNYVID-KGWAFYWGTS---EWSAQ 189 (360)
Q Consensus 130 ~~i~~~~~~sL-----------~~Lg~d~iDl~~lH~p~~-----~~~~~~~~~al~~L~~-~G~ir~iGvs---~~~~~ 189 (360)
+.++..+++.. +.++ +|++.||.-.. +.+.++..++.++..+ .+.---|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 45666666544 4555 78888886432 2344566677766643 3332233323 67888
Q ss_pred HHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccccc
Q 018137 190 QITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVL 247 (360)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~L 247 (360)
.++++++.+... ++.++-..... .+ ..+...|+++|..+++++|..-|.+
T Consensus 205 VLeaaLe~~~G~---kpLL~SAt~e~----Ny-~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 205 VLEKAAEVAEGE---RCLLASANLDL----DY-EKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred HHHHHHHHhCCC---CcEEEecCchh----hH-HHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 999999887642 24333222211 21 3578899999999999998876654
No 64
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=56.98 E-value=1.1e+02 Score=27.70 Aligned_cols=104 Identities=9% Similarity=-0.008 Sum_probs=60.3
Q ss_pred HHHHHHcCceeeec--cCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEeccccccc
Q 018137 169 MNYVIDKGWAFYWG--TSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGV 246 (360)
Q Consensus 169 l~~L~~~G~ir~iG--vs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G~ 246 (360)
|.+..++|+. -+| +...++ .+.+.... .| +++.++-.++++++.... ..++..++..|+.++..-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p-~~~e~~~~---~g-~D~v~iDlEH~~~~~~~~-~~~~~a~~~~g~~~~VRv~~~~-- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADP-YAAEICAG---AG-FDWLLIDGEHAPNDVRTI-LSQLQALAPYPSSPVVRPAIGD-- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCc-HHHHHHHh---cC-CCEEEEeccCCCCCHHHH-HHHHHHHHhcCCCcEEECCCCC--
Confidence 3444556775 344 333333 33333333 33 678888899998766542 2356666667777666643111
Q ss_pred ccccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHH
Q 018137 247 LTGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQE 326 (360)
Q Consensus 247 L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~e 326 (360)
+ .-++.++..+.-..++|-..+++++++
T Consensus 74 --------------------------------------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~ 101 (249)
T TIGR02311 74 --------------------------------------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEA 101 (249)
T ss_pred --------------------------------------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHH
Confidence 1 134566665544457777777777777
Q ss_pred HHhhccc
Q 018137 327 NMKAIDV 333 (360)
Q Consensus 327 n~~a~~~ 333 (360)
.++++..
T Consensus 102 ~v~~~~y 108 (249)
T TIGR02311 102 AVAATRY 108 (249)
T ss_pred HHHHcCC
Confidence 7777764
No 65
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=55.91 E-value=1.7e+02 Score=27.71 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCC---------------------CCCcEEEEecccc
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGW---------------------KRSDIVVSTKIFW 117 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~---------------------~R~~v~i~tK~~~ 117 (360)
.++.++-..+.++|-+.|+.+|=|.-.- +-+ ++|.+.+. ...-++|+|=.
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd~------~sv-d~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm-- 142 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFDL------ESA-DFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM-- 142 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCH------HHH-HHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC--
Confidence 4778899999999999999988654221 111 11111111 11223333332
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC-CCHHHH-HHHHHHHHHcCceeeeccCCCCHHHHHH
Q 018137 118 GGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS-TPIEET-VRAMNYVIDKGWAFYWGTSEWSAQQITE 193 (360)
Q Consensus 118 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~-~~~~~~-~~al~~L~~~G~ir~iGvs~~~~~~l~~ 193 (360)
.+.+.|..+++...+. |.+.-|+.+||+...+ .+.+++ +.++..|++.=. .-||.|.|+......
T Consensus 143 ---------atl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~ 209 (329)
T TIGR03569 143 ---------ATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAP 209 (329)
T ss_pred ---------CCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHH
Confidence 5778888888877543 4321269999987532 222222 455666665432 468999998765333
No 66
>PRK13796 GTPase YqeH; Provisional
Probab=55.60 E-value=2e+02 Score=27.63 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHcC---CCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHG---VNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEG 135 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~G---in~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~ 135 (360)
..+.++..++++..-+.- +-.+|..+.-+ .-...+.+... .+.-++|.+|+-.. ......+.+...
T Consensus 53 ~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~----~kpviLViNK~DLl-----~~~~~~~~i~~~ 121 (365)
T PRK13796 53 SLTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG----NNPVLLVGNKADLL-----PKSVKKNKVKNW 121 (365)
T ss_pred CCCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC----CCCEEEEEEchhhC-----CCccCHHHHHHH
Confidence 467777778887776555 45677665442 22334444432 35568899998321 112344566666
Q ss_pred HHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHH
Q 018137 136 TKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAW 195 (360)
Q Consensus 136 ~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~ 195 (360)
+....+.+|....|++.+..- ....++++++.+.++.+.+.+-.+|.+|..-..|...+
T Consensus 122 l~~~~k~~g~~~~~v~~vSAk-~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 122 LRQEAKELGLRPVDVVLISAQ-KGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHHHHHhcCCCcCcEEEEECC-CCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 666667777655577776543 34467888888888877788889999999987765554
No 67
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.32 E-value=1e+02 Score=29.70 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=63.2
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHc-Cc---eeeecc--CCCCHHHHHHHHHHHhhcCC---CCceeec
Q 018137 151 IYCHRPDTS-----------TPIEETVRAMNYVIDK-GW---AFYWGT--SEWSAQQITEAWGIAERLDL---VGPIVEQ 210 (360)
Q Consensus 151 ~~lH~p~~~-----------~~~~~~~~al~~L~~~-G~---ir~iGv--s~~~~~~l~~~~~~~~~~~~---~~~~~~q 210 (360)
+.||.|+.. .+++++++++.+..++ |+ +-|+=+ -|.+.++..++.+..+.... ++.-+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 679998653 3678888888887644 32 112211 27778888888888764310 1467899
Q ss_pred ccccccccchh-------hhchhhHHHhcCCeEEEecccccc
Q 018137 211 PEYNMLSRHKV-------EAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 211 ~~~n~~~~~~~-------~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
++||+.....+ -..+.+.++++||.+......+.-
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~D 353 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVE 353 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcC
Confidence 99999754321 134567778899999988776653
No 68
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=55.06 E-value=1.2e+02 Score=27.61 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=56.0
Q ss_pred CCCHH-HHHHHHHHHHHcCCCeEecccCCCC-ChHH---HHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHH
Q 018137 59 QLDVK-EAKSLLQCCRDHGVNFFDNAEVYAN-GRAE---EIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIV 133 (360)
Q Consensus 59 ~~~~~-~~~~~l~~A~~~Gin~~DTA~~Yg~-G~sE---~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~ 133 (360)
.++++ +...+.+.|.++|..|+=|+..|+. |.+. +++-+.+++.+. .. -+--|..-|. .+.+...
T Consensus 142 ~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~-~~--~vgIKAsGGI-------rt~~~A~ 211 (257)
T PRK05283 142 ELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGV-AK--TVGFKPAGGV-------RTAEDAA 211 (257)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhccc-CC--CeeEEccCCC-------CCHHHHH
Confidence 35556 4888999999999999999999973 4443 344445443211 11 2445653222 6788899
Q ss_pred HHHHHHHHhhCCCccc
Q 018137 134 EGTKASLKRLDMDYVD 149 (360)
Q Consensus 134 ~~~~~sL~~Lg~d~iD 149 (360)
..++.--+.||.++++
T Consensus 212 ~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 212 QYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHhChhhcC
Confidence 9999999999999865
No 69
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=54.42 E-value=2.3e+02 Score=28.53 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=56.6
Q ss_pred HHHHHHHHHhc--CCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHH-HHHHH
Q 018137 92 EEIMGQAIREL--GWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIE-ETVRA 168 (360)
Q Consensus 92 E~~lG~al~~~--~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~-~~~~a 168 (360)
++.|-+++.+. ..+.+-++|.|-+ ..+-|-..++...+.++.+.++++.++.|....... ..-.+
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC------------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~a 137 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSC------------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRT 137 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC------------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHH
Confidence 56666666643 1233345566554 233444455555565665568999999997765422 22233
Q ss_pred HHHHH--------------HcCceeeeccCCC---CHHHHHHHHHHHhhcC
Q 018137 169 MNYVI--------------DKGWAFYWGTSEW---SAQQITEAWGIAERLD 202 (360)
Q Consensus 169 l~~L~--------------~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~ 202 (360)
++.++ +.+.|.-||.++. .+.++.++.+.....|
T Consensus 138 l~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lG 188 (511)
T TIGR01278 138 LTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLG 188 (511)
T ss_pred HHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCC
Confidence 33332 2456888897753 4566666666666665
No 70
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=54.35 E-value=61 Score=28.48 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=51.1
Q ss_pred HHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCc-eeeeccC-CCCHHHHHHHHHHHhhcCCCCceeecccccccc
Q 018137 140 LKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGW-AFYWGTS-EWSAQQITEAWGIAERLDLVGPIVEQPEYNMLS 217 (360)
Q Consensus 140 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~ 217 (360)
...+|.||+=+++.-......+.+++ .++.+.-. ++.+||. |.+.+.+.++.+. ..++++|++-..
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~~a----~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~------~~ld~VQlHG~e-- 85 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPEQA----REIASAVPKVKVVGVFVNESIEEILEIAEE------LGLDAVQLHGDE-- 85 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHHHH----HHHHHhCCCCCEEEEECCCCHHHHHHHHHh------cCCCEEEECCCC--
Confidence 45689999888777633344444433 33333333 7899976 7788877777665 458899988651
Q ss_pred cchhhhchhhHHHhcC-CeEE
Q 018137 218 RHKVEAEYLPLYSNYG-IGLT 237 (360)
Q Consensus 218 ~~~~~~~~l~~~~~~g-i~vi 237 (360)
..++++..++.. +.++
T Consensus 86 ----~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 86 ----DPEYIDQLKEELGVPVI 102 (208)
T ss_pred ----CHHHHHHHHhhcCCceE
Confidence 234555555543 5544
No 71
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=52.01 E-value=2.2e+02 Score=27.06 Aligned_cols=28 Identities=11% Similarity=0.283 Sum_probs=24.0
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEecc
Q 018137 56 FGNQLDVKEAKSLLQCCRDHGVNFFDNA 83 (360)
Q Consensus 56 ~~~~~~~~~~~~~l~~A~~~Gin~~DTA 83 (360)
.+...+.++..++++..-+.||..|+.+
T Consensus 18 ~~~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 18 VRHQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCccCHHHHHHHHHHHHHcCCCEEEee
Confidence 3445778999999999999999999995
No 72
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=50.00 E-value=2.3e+02 Score=26.82 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEecc---------cCCCCC--hHHHHHHHHHHh
Q 018137 57 GNQLDVKEAKSLLQCCRDHGVNFFDNA---------EVYANG--RAEEIMGQAIRE 101 (360)
Q Consensus 57 ~~~~~~~~~~~~l~~A~~~Gin~~DTA---------~~Yg~G--~sE~~lG~al~~ 101 (360)
+...+.++..++++..-+.||..|+.+ -.||.. ..++.+.+..+.
T Consensus 18 ~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~ 73 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADV 73 (333)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHh
Confidence 345778999999999999999999984 122211 345666666665
No 73
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=49.59 E-value=1.8e+02 Score=25.53 Aligned_cols=139 Identities=11% Similarity=0.079 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHH
Q 018137 58 NQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTK 137 (360)
Q Consensus 58 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 137 (360)
...+.++..++++.|.+.|+.-+-..+.| -+...+.|+. .++-|+|=++++ .. ..+.+.-...++
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p~~-----v~~a~~~l~~-----~~v~v~tVigFP----~G-~~~~~~K~~E~~ 77 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNPSY-----VPLAKELLKG-----TEVRICTVVGFP----LG-ASTTDVKLYETK 77 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCHHH-----HHHHHHHcCC-----CCCeEEEEeCCC----CC-CCcHHHHHHHHH
Confidence 34678999999999999999988877777 4566666642 357788877642 11 122233333344
Q ss_pred HHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHc--Cc-eeee-ccCCCCHHHHHHHHHHHhhcCCCCceeeccc-
Q 018137 138 ASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDK--GW-AFYW-GTSEWSAQQITEAWGIAERLDLVGPIVEQPE- 212 (360)
Q Consensus 138 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~--G~-ir~i-Gvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~- 212 (360)
+.+ ++|.|-||+++-...-.....+...+.+.+.++. |+ ++-| -.+-.+.+++..+.+.+-..| .+++...
T Consensus 78 ~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaG---ADfvKTsT 153 (211)
T TIGR00126 78 EAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAG---ADFVKTST 153 (211)
T ss_pred HHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC---CCEEEeCC
Confidence 444 5799999999876543344556666777776654 54 2332 223355577788888877755 5666666
Q ss_pred -ccc
Q 018137 213 -YNM 215 (360)
Q Consensus 213 -~n~ 215 (360)
|..
T Consensus 154 Gf~~ 157 (211)
T TIGR00126 154 GFGA 157 (211)
T ss_pred CCCC
Confidence 653
No 74
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.42 E-value=1.9e+02 Score=27.91 Aligned_cols=96 Identities=16% Similarity=0.030 Sum_probs=63.9
Q ss_pred eEEecCCCCC-----------CCHHHHHHHHHHHH-HcCc---eeeeccC--CCCHHHHHHHHHHHhhcCCCCceeeccc
Q 018137 150 VIYCHRPDTS-----------TPIEETVRAMNYVI-DKGW---AFYWGTS--EWSAQQITEAWGIAERLDLVGPIVEQPE 212 (360)
Q Consensus 150 l~~lH~p~~~-----------~~~~~~~~al~~L~-~~G~---ir~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~~q~~ 212 (360)
.+-||.+++. .+++++++++.+.. +.|. |.++=+. |.+.++..++.++.+........++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 4678998763 35788898887776 4454 4444343 6677777788777765421245688899
Q ss_pred ccccccchh-------hhchhhHHHhcCCeEEEecccccc
Q 018137 213 YNMLSRHKV-------EAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 213 ~n~~~~~~~-------~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
||++....+ -..+.+..+++||.+......+.-
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 998654221 134667778999999888776643
No 75
>TIGR03586 PseI pseudaminic acid synthase.
Probab=49.25 E-value=2.2e+02 Score=26.94 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCC---------------------CCCcEEEEecccc
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGW---------------------KRSDIVVSTKIFW 117 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~---------------------~R~~v~i~tK~~~ 117 (360)
.++.++-.++.+++-+.|+.|+=|.-.- +-+ +++.+.++ ...-|+|+|=
T Consensus 73 el~~e~~~~L~~~~~~~Gi~~~stpfd~------~sv-d~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG--- 142 (327)
T TIGR03586 73 HTPWEWHKELFERAKELGLTIFSSPFDE------TAV-DFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTG--- 142 (327)
T ss_pred hCCHHHHHHHHHHHHHhCCcEEEccCCH------HHH-HHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECC---
Confidence 4667788889999999999998654222 212 22332211 1112222222
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCC-CHHH-HHHHHHHHHHcCceeeeccCCCCHHHHHHHH
Q 018137 118 GGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTST-PIEE-TVRAMNYVIDKGWAFYWGTSEWSAQQITEAW 195 (360)
Q Consensus 118 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~-~~~~-~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~ 195 (360)
..+.+.+..+++...+ -|. -|+.++|+....- +.++ -+.++..|++.=. .-||+|.|+........
T Consensus 143 --------~~t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~a 210 (327)
T TIGR03586 143 --------IATLEEIQEAVEACRE-AGC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVA 210 (327)
T ss_pred --------CCCHHHHHHHHHHHHH-CCC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHH
Confidence 1577888888877653 332 3799999864432 2222 2466666665443 46999998876533333
Q ss_pred HHHhhcCCCCceeecccccc
Q 018137 196 GIAERLDLVGPIVEQPEYNM 215 (360)
Q Consensus 196 ~~~~~~~~~~~~~~q~~~n~ 215 (360)
..+ .| -.++..++++
T Consensus 211 Ava--~G---A~iIEkH~tl 225 (327)
T TIGR03586 211 AVA--LG---ACVIEKHFTL 225 (327)
T ss_pred HHH--cC---CCEEEeCCCh
Confidence 332 22 3355555543
No 76
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=49.24 E-value=1.2e+02 Score=29.65 Aligned_cols=88 Identities=8% Similarity=-0.068 Sum_probs=58.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHHHHc------CceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchh
Q 018137 148 VDVIYCHRPDTSTPIEETVRAMNYVIDK------GWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV 221 (360)
Q Consensus 148 iDl~~lH~p~~~~~~~~~~~al~~L~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~ 221 (360)
+++ ++-.|-+..+.++.++.|.+|++. ..--..+-|.++.+++.++++.. -.+++|+..+-+---..
T Consensus 264 ~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~------a~d~v~iK~~k~GGIt~ 336 (408)
T TIGR01502 264 FHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK------AGHMVQIKTPDVGGVNN 336 (408)
T ss_pred CCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC------CCCEEEeCccccCCHHH
Confidence 355 788776554444567788888766 33334467788888888887652 25677777664322112
Q ss_pred hhchhhHHHhcCCeEEEeccc
Q 018137 222 EAEYLPLYSNYGIGLTTWSPL 242 (360)
Q Consensus 222 ~~~~l~~~~~~gi~vi~~~pl 242 (360)
-.++..+|+.+||.++..+..
T Consensus 337 a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 337 IARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHHHHHcCCEEEEeCCC
Confidence 356789999999999987665
No 77
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.85 E-value=1.9e+02 Score=27.69 Aligned_cols=91 Identities=13% Similarity=0.038 Sum_probs=59.9
Q ss_pred EecCCCCC-----------CCHHHHHHHHHHHH-HcCc---eeeeccC--CCCHHHHHHHHHHHhhcCCCCceeeccccc
Q 018137 152 YCHRPDTS-----------TPIEETVRAMNYVI-DKGW---AFYWGTS--EWSAQQITEAWGIAERLDLVGPIVEQPEYN 214 (360)
Q Consensus 152 ~lH~p~~~-----------~~~~~~~~al~~L~-~~G~---ir~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n 214 (360)
-||.+++. .+++++++++.+.. +.|+ |+++=+. |.+.+.+.++.++.+.. +..++-++||
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l---~~~VnLIPyn 301 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGI---KAKVNLILFN 301 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhc---CcEEEEEeCC
Confidence 38998663 24577888887554 4454 4555444 77788888888887753 4578888999
Q ss_pred ccccchh----h---hchhhHHHhcCCeEEEecccccc
Q 018137 215 MLSRHKV----E---AEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 215 ~~~~~~~----~---~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
++....+ . ..+....+++|+.+......+.-
T Consensus 302 ~~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~d 339 (356)
T PRK14462 302 PHEGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLD 339 (356)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 8753221 1 22445667789999888766543
No 78
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=48.33 E-value=69 Score=29.57 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=64.1
Q ss_pred CceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchh--hhchhhHHHhcCCeEEEecccccccccccccC
Q 018137 176 GWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV--EAEYLPLYSNYGIGLTTWSPLASGVLTGKYNK 253 (360)
Q Consensus 176 G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~--~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~ 253 (360)
+++-.+-=++++.+...++.+..+... +...-.-+|=++..-. ...+.+++++-++-++.-+.-.+
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~---~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss--------- 222 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRF---PELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS--------- 222 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHS---TCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H---------
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhC---ccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc---------
Confidence 467777778899888888887776542 2221122333332211 23467777777766555221110
Q ss_pred CCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCC------CHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHH
Q 018137 254 GSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGV------PLAQLAIAWCASNPNVSSVITGATKESQIQEN 327 (360)
Q Consensus 254 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en 327 (360)
-..+|.++|++++. ++.++...|+-.... ..+..|+|+|+.+-+.
T Consensus 223 ----------------------------NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~-VGItaGASTP~~ii~e 273 (281)
T PF02401_consen 223 ----------------------------NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKK-VGITAGASTPDWIIEE 273 (281)
T ss_dssp ----------------------------HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SE-EEEEE-TTS-HHHHHH
T ss_pred ----------------------------cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCE-EEEEccCCCCHHHHHH
Confidence 01378889999874 688999999988764 4799999999987765
Q ss_pred H
Q 018137 328 M 328 (360)
Q Consensus 328 ~ 328 (360)
+
T Consensus 274 V 274 (281)
T PF02401_consen 274 V 274 (281)
T ss_dssp H
T ss_pred H
Confidence 4
No 79
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=48.23 E-value=77 Score=28.04 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEecccCCCCC---hHHHHHHHHHHh
Q 018137 57 GNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANG---RAEEIMGQAIRE 101 (360)
Q Consensus 57 ~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G---~sE~~lG~al~~ 101 (360)
.++.+.+++.++++.|.++||+-+=..++|-+| .+++.+-+.+.+
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ 61 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQ 61 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHH
Confidence 356788999999999999999988777777555 355555555543
No 80
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=48.14 E-value=39 Score=29.69 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=42.5
Q ss_pred HHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccC-CCCHHHHHHHHHHHhhcCCCCceeeccccc
Q 018137 140 LKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTS-EWSAQQITEAWGIAERLDLVGPIVEQPEYN 214 (360)
Q Consensus 140 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n 214 (360)
+..+|.|++=+.+........+.+.+-+....+ .+.+..+||. +-+++.+.++.+. ..++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~------~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVET------VPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh------cCCCEEEECCC
Confidence 346899999997544333334444333333222 3568889975 7788877777664 34889999754
No 81
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=48.01 E-value=1.3e+02 Score=29.68 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEecC
Q 018137 126 GLSRKHIVEGTKASLKRLDMDYVDVIYCHR 155 (360)
Q Consensus 126 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~ 155 (360)
+.+.+.+++.++..+ .|+.++|++|.|.-
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~ 254 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNL 254 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEecccc
Confidence 367777877777655 48999999998863
No 82
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=48.01 E-value=2.4e+02 Score=26.53 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=53.9
Q ss_pred HHhhCCCccceEEecC-CCC-CCCHHHHHHHHHHHHHcCceee-eccC---CCCHHHHHHHHHHHhhcCCCCceeecccc
Q 018137 140 LKRLDMDYVDVIYCHR-PDT-STPIEETVRAMNYVIDKGWAFY-WGTS---EWSAQQITEAWGIAERLDLVGPIVEQPEY 213 (360)
Q Consensus 140 L~~Lg~d~iDl~~lH~-p~~-~~~~~~~~~al~~L~~~G~ir~-iGvs---~~~~~~l~~~~~~~~~~~~~~~~~~q~~~ 213 (360)
-+.+|.|+||+-+.-. |+. +...++....++...+.=.+-- |..| .-+++.++++++.++.. ++.++...
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~---~pLInSat- 160 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE---RCLLGSAE- 160 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC---CCEEEECC-
Confidence 4578888888775432 322 2233444444444433222222 4444 23788888988887642 23333222
Q ss_pred cccccchhhhchhhHHHhcCCeEEEecccc
Q 018137 214 NMLSRHKVEAEYLPLYSNYGIGLTTWSPLA 243 (360)
Q Consensus 214 n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~ 243 (360)
... -..++++|+++|..+++.+|..
T Consensus 161 ----~en-~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 ----EDN-YKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred ----HHH-HHHHHHHHHHhCCeEEEEcHHH
Confidence 212 2357899999999999988644
No 83
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=47.64 E-value=44 Score=30.65 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=63.9
Q ss_pred HHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeec-cCCCCHHHHHHHHHHHhhcCCCCceeecccccccc
Q 018137 139 SLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWG-TSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLS 217 (360)
Q Consensus 139 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iG-vs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~ 217 (360)
++++...+..|+..+..|.-.. -..+..+...-++-.+- -+.+...+++++++.++..+ ++..++-++||+-+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~g-----CpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~-ip~~iViNr~~~g~ 228 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTG-----CPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFG-IPTGIVINRYNLGD 228 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCC-----ChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhC-CceEEEEecCCCCc
Confidence 4555544557899998875432 12233344444433332 23566677888888888888 56777888886544
Q ss_pred cchhhhchhhHHHhcCCeEEEecccccc
Q 018137 218 RHKVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 218 ~~~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
. ++.++|++.|+.+++--|+..-
T Consensus 229 s-----~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 229 S-----EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred h-----HHHHHHHHcCCCeeEECCcchh
Confidence 2 5788999999999998887753
No 84
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=47.55 E-value=2.2e+02 Score=25.97 Aligned_cols=134 Identities=7% Similarity=0.003 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEecccC--------CCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCH
Q 018137 58 NQLDVKEAKSLLQCCRDHGVNFFDNAEV--------YANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSR 129 (360)
Q Consensus 58 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~--------Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~ 129 (360)
...+.++..++.....+.||..||...- |-....++.+.++-+. .++.++......- +.+....+..
T Consensus 16 ~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~--~~~~~l~~~~r~~---~~~~~~~~p~ 90 (275)
T cd07937 16 TRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA--MPNTPLQMLLRGQ---NLVGYRHYPD 90 (275)
T ss_pred eeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh--CCCCceehhcccc---cccCccCCCc
Confidence 3467788889988889999999998742 1122334555444443 2344444333320 0011111222
Q ss_pred HHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeecc-----CCCCHHHHHHHHHHHhhcC
Q 018137 130 KHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGT-----SEWSAQQITEAWGIAERLD 202 (360)
Q Consensus 130 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGv-----s~~~~~~l~~~~~~~~~~~ 202 (360)
+-.+..++.+. ..|+|.|-++ .+..+++.+.+..+..++.|+.-..++ +.++++.+.++.+.+.+.|
T Consensus 91 ~~~~~di~~~~-~~g~~~iri~-----~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G 162 (275)
T cd07937 91 DVVELFVEKAA-KNGIDIFRIF-----DALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG 162 (275)
T ss_pred HHHHHHHHHHH-HcCCCEEEEe-----ecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 22334444433 4465554442 233346778888899999997544443 4677777777776666554
No 85
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=47.42 E-value=1.8e+02 Score=30.31 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHh
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKR 142 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 142 (360)
|-+.+++++|-|.|++.+- .|.. +--+.--+ .+-|+-|+..|... |-......+. +-+..++
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYse----qD~~sMHR---qKADEaY~iGk~l~----PV~AYL~ide----ii~iak~ 104 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYSE----QDRLSMHR---QKADEAYLIGKGLP----PVGAYLAIDE----IISIAKK 104 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEec----cchhhhhh---hccccceecccCCC----chhhhhhHHH----HHHHHHH
Confidence 6788999999999999764 6743 22222222 25678899999731 1111122222 2233444
Q ss_pred hCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHH---HHHHHHHhhcCCCCceeecccccccccc
Q 018137 143 LDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQI---TEAWGIAERLDLVGPIVEQPEYNMLSRH 219 (360)
Q Consensus 143 Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l---~~~~~~~~~~~~~~~~~~q~~~n~~~~~ 219 (360)
-++|. +| |. ..-+.|--+.-+...+.| |+.||-|.--...+ ..+...+-.-| .-++-..=.++..
T Consensus 105 ~~vda-----vH-PG-YGFLSErsdFA~av~~AG-i~fiGPspeVi~~mGDKv~AR~~Ai~ag---VpvVPGTpgPitt- 172 (1176)
T KOG0369|consen 105 HNVDA-----VH-PG-YGFLSERSDFAQAVQDAG-IRFIGPSPEVIDSMGDKVAARAIAIEAG---VPVVPGTPGPITT- 172 (1176)
T ss_pred cCCCe-----ec-CC-ccccccchHHHHHHHhcC-ceEeCCCHHHHHHhhhHHHHHHHHHHcC---CCccCCCCCCccc-
Confidence 44443 45 21 112222233333444555 68999763222211 11111111112 1111111122222
Q ss_pred hhhhchhhHHHhcCCeEEEecccccc
Q 018137 220 KVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 220 ~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
-.+.+++|+++|..||--...++|
T Consensus 173 --~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 173 --VEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred --HHHHHHHHHhcCCcEEEeecccCC
Confidence 136799999999999999999887
No 86
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=46.80 E-value=1.5e+02 Score=27.59 Aligned_cols=42 Identities=21% Similarity=0.429 Sum_probs=32.0
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHH
Q 018137 285 RLKPIADELGV------PLAQLAIAWCASNPNVSSVITGATKESQIQEN 327 (360)
Q Consensus 285 ~l~~la~~~~~------s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en 327 (360)
+|.++|++++. ++.++-..|+..... ..+..|+|+|+.+-+.
T Consensus 227 kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGitaGASTP~~li~e 274 (298)
T PRK01045 227 RLREVAEEAGAPAYLIDDASEIDPEWFKGVKT-VGVTAGASAPEWLVQE 274 (298)
T ss_pred HHHHHHHHHCCCEEEECChHHCcHHHhcCCCE-EEEEecCCCCHHHHHH
Confidence 67778887763 678888899976554 4789999999966553
No 87
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=46.28 E-value=2.2e+02 Score=25.61 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHH-HHHHHHHH
Q 018137 58 NQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAE-EIMGQAIR 100 (360)
Q Consensus 58 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE-~~lG~al~ 100 (360)
...+.++..++++.-.+.||..|++.... .+..+ +.+.+..+
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~-~~~~~~e~~~~l~~ 57 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVGIPA-MGEEEREAIRAIVA 57 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHh
Confidence 35677899999999999999999997322 24455 55544443
No 88
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=45.40 E-value=1.5e+02 Score=26.58 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCeEecccCCCC---ChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 018137 65 AKSLLQCCRDHGVNFFDNAEVYAN---GRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLK 141 (360)
Q Consensus 65 ~~~~l~~A~~~Gin~~DTA~~Yg~---G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 141 (360)
..+++..|.+.|...|=+.++.-. +..++.+-...+.....+..+- .|+..|.. .+.-++......+.-+.
T Consensus 18 ~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~~G~E----~~~~~~~~~d~~~~~~~ 91 (237)
T COG1387 18 PEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYD--IKILIGIE----VDILPDGSLDFLDEILK 91 (237)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcC--ceEEEeEE----EEecCCCCcccchhhHh
Confidence 345589999999999999988765 5555555444442111111111 23322210 00000111111122222
Q ss_pred hhCCCccceEEecCCCC-CCCHHHHHHHHHHHHHcCceeeeccCCC----------CHHHHHHHHHHHhhcCCCCceeec
Q 018137 142 RLDMDYVDVIYCHRPDT-STPIEETVRAMNYVIDKGWAFYWGTSEW----------SAQQITEAWGIAERLDLVGPIVEQ 210 (360)
Q Consensus 142 ~Lg~d~iDl~~lH~p~~-~~~~~~~~~al~~L~~~G~ir~iGvs~~----------~~~~l~~~~~~~~~~~~~~~~~~q 210 (360)
.| |+ =+..+|.+.. ........+.+..+...+.|..||=.+. ....+++.++.+...|. ++.
T Consensus 92 ~l--D~-vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----ale 164 (237)
T COG1387 92 EL--DY-VIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNGK----ALE 164 (237)
T ss_pred hc--CE-EEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhCc----EEe
Confidence 32 22 3456798632 2234556788888999999888873322 23356677777776652 223
Q ss_pred ccccccccchhhhchhhHHHhcCCeEEE
Q 018137 211 PEYNMLSRHKVEAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 211 ~~~n~~~~~~~~~~~l~~~~~~gi~vi~ 238 (360)
+.-+.-...+ ...++..|++.|+.+.-
T Consensus 165 ins~~~~~~~-~~~~~~~~~e~G~~~~i 191 (237)
T COG1387 165 INSRPGRLDP-NSEILRLARELGVKLAI 191 (237)
T ss_pred ecCCcCccCc-hHHHHHHHHHhCCeEEe
Confidence 3333212222 35688999999887643
No 89
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=44.90 E-value=2.5e+02 Score=26.86 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=92.8
Q ss_pred CCCCCHHHHHHHH---HHHHH-c--CCCeEecccCCCCCh---HHHHHHHHHHhc----CC--CCCcEEEEeccccCCCC
Q 018137 57 GNQLDVKEAKSLL---QCCRD-H--GVNFFDNAEVYANGR---AEEIMGQAIREL----GW--KRSDIVVSTKIFWGGQG 121 (360)
Q Consensus 57 ~~~~~~~~~~~~l---~~A~~-~--Gin~~DTA~~Yg~G~---sE~~lG~al~~~----~~--~R~~v~i~tK~~~~~~~ 121 (360)
+.+++.++..+-+ +..++ . |++.++.--.-|.|+ .-+.+-++++.. ++ ....+.|+|=.
T Consensus 127 ~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G------ 200 (354)
T PRK14460 127 ERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCG------ 200 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCC------
Confidence 4567777776666 33442 2 333244444445453 124445566542 11 12246666642
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC-----------CCHHHHHHHHHHHHHc-Cc---eeeecc--C
Q 018137 122 PNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS-----------TPIEETVRAMNYVIDK-GW---AFYWGT--S 184 (360)
Q Consensus 122 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~-----------~~~~~~~~al~~L~~~-G~---ir~iGv--s 184 (360)
. .+ .++ .|...+...|++ -||.+++. .+++++++++.+...+ |. |+++=+ -
T Consensus 201 -----~-~~----~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~Gv 268 (354)
T PRK14460 201 -----I-EK----GLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGV 268 (354)
T ss_pred -----C-hH----HHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCC
Confidence 2 22 222 355555544444 57877553 3567788888765443 22 333323 3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCceeecccccccccchh----h---hchhhHHHhcCCeEEEecccccc
Q 018137 185 EWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV----E---AEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~----~---~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
|.+.+++.++.++++.. +..++-++||++....+ . ..+.+..+++|+.+......+.-
T Consensus 269 NDs~ed~~~l~~~l~~~---~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~d 333 (354)
T PRK14460 269 NDSLEHARELVRLLSRT---KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQD 333 (354)
T ss_pred CCCHHHHHHHHHHHhcC---CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCc
Confidence 67778888888888764 35677778887543211 1 23456677889999887766543
No 90
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=44.64 E-value=3.5e+02 Score=27.34 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=31.6
Q ss_pred cceEEecCCCCCCCHH-HHHHHHHHHH------------------HcCceeeeccCC---CCHHHHHHHHHHHhhcC
Q 018137 148 VDVIYCHRPDTSTPIE-ETVRAMNYVI------------------DKGWAFYWGTSE---WSAQQITEAWGIAERLD 202 (360)
Q Consensus 148 iDl~~lH~p~~~~~~~-~~~~al~~L~------------------~~G~ir~iGvs~---~~~~~l~~~~~~~~~~~ 202 (360)
++++.+|.|....... ..-.+++.++ .+++|.-||.++ .++.++.++.+.....|
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~G 193 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLG 193 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCC
Confidence 6899999997654321 2222333333 235688898663 22455566666655555
No 91
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=44.57 E-value=2.2e+02 Score=28.48 Aligned_cols=175 Identities=15% Similarity=0.132 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEecccCCCCCh---HHHHHHHHHH--hcCCCCCcEEEEecccc---CC--------CC-
Q 018137 60 LDVKEAKSLLQCCRDH-GVNFFDNAEVYANGR---AEEIMGQAIR--ELGWKRSDIVVSTKIFW---GG--------QG- 121 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~G~---sE~~lG~al~--~~~~~R~~v~i~tK~~~---~~--------~~- 121 (360)
.+.+...++++.+++. +++.=|.+..+.... -|.+.-.|-+ .. .-.+.|++.+=+.. .. ..
T Consensus 28 ~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~-~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~ 106 (469)
T PRK09613 28 PDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEK-IYGNRIVLFAPLYISNYCVNNCVYCGFRRS 106 (469)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHH-HcCCEEEEEEeccccCCCCCCCccCCCccC
Confidence 4556677788887763 566556555553321 2333322222 11 11233444333321 10 00
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHH----cCceeeeccC--CCCHHHHH
Q 018137 122 ---PNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVID----KGWAFYWGTS--EWSAQQIT 192 (360)
Q Consensus 122 ---~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~----~G~ir~iGvs--~~~~~~l~ 192 (360)
......+.+.|.+.++. ++..|...+-|+.=..| +..+++-+.++++.+++ .|.++.++|+ ..+.++++
T Consensus 107 n~~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~ 184 (469)
T PRK09613 107 NKEIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYK 184 (469)
T ss_pred CCCCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHH
Confidence 11134788999998875 57789777655422222 33466666777777775 5777777654 55666666
Q ss_pred HHHHHHhhcCCCCceeecccccc-----cccc----h--hhhchhhHHHhcCCeEEEecc
Q 018137 193 EAWGIAERLDLVGPIVEQPEYNM-----LSRH----K--VEAEYLPLYSNYGIGLTTWSP 241 (360)
Q Consensus 193 ~~~~~~~~~~~~~~~~~q~~~n~-----~~~~----~--~~~~~l~~~~~~gi~vi~~~p 241 (360)
++.+ .|.....++|=-||. +++. . +..+.++.+++.|+.-++.+.
T Consensus 185 ~Lke----aGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~ 240 (469)
T PRK09613 185 KLKE----AGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGV 240 (469)
T ss_pred HHHH----cCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEE
Confidence 6544 343344455555542 2111 1 123457788888887555433
No 92
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=44.40 E-value=1.1e+02 Score=27.04 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=40.5
Q ss_pred cccccccch--hhhchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHH
Q 018137 212 EYNMLSRHK--VEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPI 289 (360)
Q Consensus 212 ~~n~~~~~~--~~~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 289 (360)
+||.++... ...++.++++..|-.-+.+.|+..|--.+.. ...+.....+++++.|
T Consensus 73 pFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~----------------------vr~~~lv~AlkaLkpi 130 (272)
T COG4130 73 PFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTA----------------------VRREDLVEALKALKPI 130 (272)
T ss_pred cccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcc----------------------cchHHHHHHHHHhhHH
Confidence 555555432 1357889999999999999999876211110 0113455566788888
Q ss_pred HHHcCCC
Q 018137 290 ADELGVP 296 (360)
Q Consensus 290 a~~~~~s 296 (360)
-+++|++
T Consensus 131 l~~~gi~ 137 (272)
T COG4130 131 LDEYGIT 137 (272)
T ss_pred HHHhCcc
Confidence 8888764
No 93
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.90 E-value=36 Score=32.04 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=81.4
Q ss_pred CceeecCCCCcccCccccccccccCCCCCHHHHHHHHHHHHHcCCC--eEecccCCCCChHHHHHHHHHHhcCCCCCcEE
Q 018137 33 MQYKHLGRSGLRVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVN--FFDNAEVYANGRAEEIMGQAIRELGWKRSDIV 110 (360)
Q Consensus 33 m~~r~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~ 110 (360)
|.+..++ .|..|-..|+|+.... .++.|-..|.+ .||++.. ..| ++++.+| -|.++
T Consensus 174 Lk~~g~~-pG~~vgI~GlGGLGh~-----------aVq~AKAMG~rV~vis~~~~----kke----ea~~~LG--Ad~fv 231 (360)
T KOG0023|consen 174 LKRSGLG-PGKWVGIVGLGGLGHM-----------AVQYAKAMGMRVTVISTSSK----KKE----EAIKSLG--ADVFV 231 (360)
T ss_pred hHHcCCC-CCcEEEEecCcccchH-----------HHHHHHHhCcEEEEEeCCch----hHH----HHHHhcC--cceeE
Confidence 7777776 7888888888874221 34555555655 6776432 224 4455544 34445
Q ss_pred EEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCC--CCCCHHHHHHHHHHHHHcCceeeeccCCCCH
Q 018137 111 VSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPD--TSTPIEETVRAMNYVIDKGWAFYWGTSEWSA 188 (360)
Q Consensus 111 i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~--~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~ 188 (360)
++||- + ++.+++..++.-+ +|... ...+ .-..++-|+..|++-.+|+-+..
T Consensus 232 ~~~~d-------------~-d~~~~~~~~~dg~---------~~~v~~~a~~~---~~~~~~~lk~~Gt~V~vg~p~~~- 284 (360)
T KOG0023|consen 232 DSTED-------------P-DIMKAIMKTTDGG---------IDTVSNLAEHA---LEPLLGLLKVNGTLVLVGLPEKP- 284 (360)
T ss_pred EecCC-------------H-HHHHHHHHhhcCc---------ceeeeeccccc---hHHHHHHhhcCCEEEEEeCcCCc-
Confidence 55542 2 3445555555432 23222 2222 23567778999999999997763
Q ss_pred HHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCe
Q 018137 189 QQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIG 235 (360)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~ 235 (360)
..+.-..-. +-...+..|.+-......+++++|.+++|.
T Consensus 285 ~~~~~~~li--------l~~~~I~GS~vG~~ket~E~Ldf~a~~~ik 323 (360)
T KOG0023|consen 285 LKLDTFPLI--------LGRKSIKGSIVGSRKETQEALDFVARGLIK 323 (360)
T ss_pred ccccchhhh--------cccEEEEeeccccHHHHHHHHHHHHcCCCc
Confidence 222111111 112334445444444467899999998765
No 94
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.41 E-value=3.5e+02 Score=26.74 Aligned_cols=83 Identities=17% Similarity=0.092 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCCeEe--------cccCCCCC----hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHH
Q 018137 65 AKSLLQCCRDHGVNFFD--------NAEVYANG----RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHI 132 (360)
Q Consensus 65 ~~~~l~~A~~~Gin~~D--------TA~~Yg~G----~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i 132 (360)
-.++++.|+|+|.-=+- |...|.++ ..+++.+.++.-.. .+..+.-+|... .....+
T Consensus 184 MaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~-ag~~iLqst~d~----------~egaa~ 252 (579)
T COG3653 184 MAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVAR-AGGRILQSTHDR----------DEGAAA 252 (579)
T ss_pred HHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHH-hcCceeEeeccc----------cchHHH
Confidence 45789999999876555 67777654 24677777665211 233444444431 344556
Q ss_pred HHHHHHHHHhh-CCCccceEEecCCCC
Q 018137 133 VEGTKASLKRL-DMDYVDVIYCHRPDT 158 (360)
Q Consensus 133 ~~~~~~sL~~L-g~d~iDl~~lH~p~~ 158 (360)
...++++-+.- .-..+-+.+.|.-+.
T Consensus 253 L~~l~~a~ri~~R~~~vr~v~s~~a~a 279 (579)
T COG3653 253 LEALLEASRIGNRRKGVRMVMSHSADA 279 (579)
T ss_pred HHHHHHHHHhcCcccCceEEEeccccc
Confidence 66666666665 334578888886543
No 95
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=42.07 E-value=1.9e+02 Score=26.73 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHH
Q 018137 285 RLKPIADELGV------PLAQLAIAWCASNPNVSSVITGATKESQIQENM 328 (360)
Q Consensus 285 ~l~~la~~~~~------s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~ 328 (360)
+|.++|++.+. ++.++-..|+..... ..+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~-VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYKI-IGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEccCCCCHHHHHHH
Confidence 67788887763 678888899987654 47899999999776543
No 96
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.94 E-value=2.4e+02 Score=27.21 Aligned_cols=87 Identities=10% Similarity=0.001 Sum_probs=56.9
Q ss_pred eEEecCCCCCCCHHHHHHHHHHHHHc------CceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhh
Q 018137 150 VIYCHRPDTSTPIEETVRAMNYVIDK------GWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEA 223 (360)
Q Consensus 150 l~~lH~p~~~~~~~~~~~al~~L~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~ 223 (360)
++++-.|-+..+.++-++.+.+|.+. +.=-..|-+.++.+.+.++++.. -.+++|+..+-.---..-.
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~------a~div~~kl~k~GGIt~a~ 302 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG------AAHMVQIKTPDLGGIDNTI 302 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC------CCCEEEecchhcCCHHHHH
Confidence 45777776544433456777788766 44444567788888888887652 2667777766432111124
Q ss_pred chhhHHHhcCCeEEEeccc
Q 018137 224 EYLPLYSNYGIGLTTWSPL 242 (360)
Q Consensus 224 ~~l~~~~~~gi~vi~~~pl 242 (360)
.+..+|+.+||.++..+..
T Consensus 303 kia~lA~a~Gi~~~~h~~~ 321 (369)
T cd03314 303 DAVLYCKEHGVGAYLGGSC 321 (369)
T ss_pred HHHHHHHHcCCcEEEeCCC
Confidence 6788999999999987543
No 97
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=41.66 E-value=2.9e+02 Score=25.58 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=35.4
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHh
Q 018137 285 RLKPIADELGV------PLAQLAIAWCASNPNVSSVITGATKESQIQENMK 329 (360)
Q Consensus 285 ~l~~la~~~~~------s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~ 329 (360)
+|.++|+++|. ++.++=..|+..... ..+..|+|+|+.|-+++-
T Consensus 229 rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~-VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 229 RLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKT-VGVTAGASTPDWLVQEVI 278 (294)
T ss_pred HHHHHHHHhCCCeEEeCChHhCCHHHhcCccE-EEEecCCCCCHHHHHHHH
Confidence 78899999886 578888899888554 468899999998877653
No 98
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=41.26 E-value=37 Score=23.44 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 018137 285 RLKPIADELGVPLAQLAIAWCA 306 (360)
Q Consensus 285 ~l~~la~~~~~s~~q~al~~~l 306 (360)
.+.+||+++|+++.++|..|+-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 5678999999999999999975
No 99
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=40.96 E-value=2.4e+02 Score=24.39 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHH
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKAS 139 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~s 139 (360)
.+.++..++++.|.+.|+.-+-+.+.| =+...+.++. ..+.+.+=+++ |.. ..+.+....++++.
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~-----v~~~~~~l~~-----~~~~v~~~~~f----p~g-~~~~~~k~~eve~A 78 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCF-----VPLAREALKG-----SGVKVCTVIGF----PLG-ATTTEVKVAEAREA 78 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHH-----HHHHHHHcCC-----CCcEEEEEEec----CCC-CCcHHHHHHHHHHH
Confidence 467899999999999888777665544 2223334432 33556555543 111 24456666678887
Q ss_pred HHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHc--Ccee--eeccCCCCHHHHHHHHHHHhhcCCCCceeeccc--c
Q 018137 140 LKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDK--GWAF--YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPE--Y 213 (360)
Q Consensus 140 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~--G~ir--~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~--~ 213 (360)
++ +|.|-||+++--..-.....++.++.+.++++. |+.- -+.....+.+.+..+.+.+-+.| .+++... |
T Consensus 79 ~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~G---aD~IKTsTG~ 154 (203)
T cd00959 79 IA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAG---ADFIKTSTGF 154 (203)
T ss_pred HH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC---CCEEEcCCCC
Confidence 76 699999998765433334455566667766665 4432 13445556788888888887765 5566665 6
Q ss_pred c
Q 018137 214 N 214 (360)
Q Consensus 214 n 214 (360)
.
T Consensus 155 ~ 155 (203)
T cd00959 155 G 155 (203)
T ss_pred C
Confidence 4
No 100
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=40.82 E-value=1.2e+02 Score=26.70 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCc
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGP 206 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~ 206 (360)
++.+.. ..+-+.|.++|+++|++- .|.......+.++.+.+.... .+..+++......++.+.+.+...+. +.
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~-~~ 83 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGI-DI 83 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTS-SE
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccC-CE
Confidence 555544 445567999999999988 222221122334444444444 44445666777778786665555442 22
Q ss_pred eeecccccccccc------h-----hhhchhhHHHhcCCeE
Q 018137 207 IVEQPEYNMLSRH------K-----VEAEYLPLYSNYGIGL 236 (360)
Q Consensus 207 ~~~q~~~n~~~~~------~-----~~~~~l~~~~~~gi~v 236 (360)
..+-...|..+.. . .-.+.+.+++++|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 2222333321110 0 0135678889999988
No 101
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=40.24 E-value=2e+02 Score=28.19 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEe-cCCCCC----------CCH-H---HHH-HHHHHHHHcCceeeeccCCCCH
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYC-HRPDTS----------TPI-E---ETV-RAMNYVIDKGWAFYWGTSEWSA 188 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-H~p~~~----------~~~-~---~~~-~al~~L~~~G~ir~iGvs~~~~ 188 (360)
.+.+.+.+.++..+ .|+.|+|.+|.| |-|... .+- + +.+ .+.+.|.+.|. +.+|+|||.-
T Consensus 201 QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 57777777777655 467999999988 444221 111 1 234 34445667787 9999999985
No 102
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=40.20 E-value=3.2e+02 Score=25.66 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEecccCCCCC--hHHHHHHHHHHhcC-CC-CCcEEEEeccccCCCCCCCCCCCHHHHHH
Q 018137 60 LDVKEAKSLLQCCRDH-GVNFFDNAEVYANG--RAEEIMGQAIRELG-WK-RSDIVVSTKIFWGGQGPNDKGLSRKHIVE 134 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~G--~sE~~lG~al~~~~-~~-R~~v~i~tK~~~~~~~~~~~~~~~~~i~~ 134 (360)
.+.++..++++..-+. ||+.+--+- |.. .+...+-+.+.... ++ -+.+-|.||+. ...+..|.+
T Consensus 125 ~~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~---------~~~p~rit~ 193 (321)
T TIGR03821 125 PNKAQWKEALEYIAQHPEINEVILSG--GDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLP---------VVIPDRITS 193 (321)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeC--cccccCCchHHHHHHHHHHhCCCCcEEEEecCcc---------eeeHHHhhH
Confidence 4556777777665544 787654222 111 12333444443221 11 13566777762 133445666
Q ss_pred HHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeec-cC----CCCHHHHHHHHHHHhhcCC
Q 018137 135 GTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWG-TS----EWSAQQITEAWGIAERLDL 203 (360)
Q Consensus 135 ~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iG-vs----~~~~~~l~~~~~~~~~~~~ 203 (360)
.+-+.|+..|...+ +.+|--.+..-.+++.++++.|++.|..-.+= +- |.+.+.+.++.+.+...|.
T Consensus 194 el~~~L~~~~~~~~--~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv 265 (321)
T TIGR03821 194 GLCDLLANSRLQTV--LVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGV 265 (321)
T ss_pred HHHHHHHhcCCcEE--EEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCC
Confidence 66666666664332 23464222222356778888888888633221 11 4466677777766655553
No 103
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=39.69 E-value=3.3e+02 Score=25.62 Aligned_cols=24 Identities=17% Similarity=-0.020 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEecc
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFDNA 83 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~DTA 83 (360)
.+.++..+.++.+.+.|++.|--.
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~ 95 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQ 95 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEe
Confidence 678899999999999999877664
No 104
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=39.67 E-value=2.2e+02 Score=23.92 Aligned_cols=79 Identities=9% Similarity=-0.072 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHH
Q 018137 93 EIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYV 172 (360)
Q Consensus 93 ~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L 172 (360)
+.+|+||++.++.-|.|++++++. .+.-.+...+.++.+. .-.+++-.+..+.....+.++++
T Consensus 35 ~~~a~~L~~~~~~~D~VL~Spa~R---------------a~QTae~v~~~~~~~~--~~~~~~l~p~~d~~~~l~~l~~~ 97 (163)
T COG2062 35 ELVAAWLAGQGVEPDLVLVSPAVR---------------ARQTAEIVAEHLGEKK--VEVFEELLPNGDPGTVLDYLEAL 97 (163)
T ss_pred HHHHHHHHhcCCCCCEEEeChhHH---------------HHHHHHHHHHhhCccc--ceeccccCCCCCHHHHHHHHHHh
Confidence 678999999887566677777762 2233333444555221 12234445556667777777777
Q ss_pred HHcCceeeeccCCCCHHH
Q 018137 173 IDKGWAFYWGTSEWSAQQ 190 (360)
Q Consensus 173 ~~~G~ir~iGvs~~~~~~ 190 (360)
.+ -+..+.+-.|+|.-
T Consensus 98 ~d--~v~~vllVgH~P~l 113 (163)
T COG2062 98 GD--GVGSVLLVGHNPLL 113 (163)
T ss_pred cc--cCceEEEECCCccH
Confidence 76 46777777788754
No 105
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.50 E-value=4.1e+02 Score=26.65 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCceeeeccC----CCCHHHHHHHHHHHhhcCCCCc-eeecccccccccchhhhchhhHHHhcCCe
Q 018137 161 PIEETVRAMNYVIDKGWAFYWGTS----EWSAQQITEAWGIAERLDLVGP-IVEQPEYNMLSRHKVEAEYLPLYSNYGIG 235 (360)
Q Consensus 161 ~~~~~~~al~~L~~~G~ir~iGvs----~~~~~~l~~~~~~~~~~~~~~~-~~~q~~~n~~~~~~~~~~~l~~~~~~gi~ 235 (360)
+.+.+++.++.|+++.-++.+-+. +.+...+.++++.....+-.++ -..+.+.+.+.+ +.++++.+++.|+.
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~---d~ell~~l~~aG~~ 299 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVR---DADILHLYRRAGLV 299 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccC---CHHHHHHHHHhCCc
Confidence 467788889888876556766544 2345555565554443330111 123444443322 23678888888887
Q ss_pred EEEec
Q 018137 236 LTTWS 240 (360)
Q Consensus 236 vi~~~ 240 (360)
.+..+
T Consensus 300 ~v~iG 304 (497)
T TIGR02026 300 HISLG 304 (497)
T ss_pred EEEEc
Confidence 66654
No 106
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.39 E-value=2.9e+02 Score=26.31 Aligned_cols=91 Identities=12% Similarity=0.021 Sum_probs=60.0
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHcC--c--eeeecc--CCCCHHHHHHHHHHHhhcCCCCceeecccc
Q 018137 151 IYCHRPDTS-----------TPIEETVRAMNYVIDKG--W--AFYWGT--SEWSAQQITEAWGIAERLDLVGPIVEQPEY 213 (360)
Q Consensus 151 ~~lH~p~~~-----------~~~~~~~~al~~L~~~G--~--ir~iGv--s~~~~~~l~~~~~~~~~~~~~~~~~~q~~~ 213 (360)
+-||.+++. .+++++++++.+....+ . ++++=+ -|.+.+.+.++.++++.. +..++-++|
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l---~~~vnlIPy 287 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI---PSKVNLIPF 287 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc---CceEEEEec
Confidence 668988553 24577888887776644 2 334433 367778899998888764 345777888
Q ss_pred cccccchh-------hhchhhHHHhcCCeEEEeccccc
Q 018137 214 NMLSRHKV-------EAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 214 n~~~~~~~-------~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
|++....+ -..+...++++||.+......+.
T Consensus 288 n~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 288 NEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 88643211 12356677889999998877654
No 107
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=39.29 E-value=2.8e+02 Score=24.70 Aligned_cols=128 Identities=10% Similarity=0.064 Sum_probs=70.5
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEecccCCCC------ChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCH
Q 018137 56 FGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYAN------GRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSR 129 (360)
Q Consensus 56 ~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~------G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~ 129 (360)
.+...+.++..++++...+.|+.+|+....=.. -..++.+.+.-+. + +...+...++. ..
T Consensus 12 ~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~-~-~~~~~~~l~~~------------~~ 77 (265)
T cd03174 12 EGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKL-V-PNVKLQALVRN------------RE 77 (265)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhc-c-CCcEEEEEccC------------ch
Confidence 344567899999999999999999997643221 2334555554432 1 22223233321 12
Q ss_pred HHHHHHHHHHHHhhCCCccceEEecCC---------CCCCCHHHHHHHHHHHHHcCceeeecc---CC--CCHHHHHHHH
Q 018137 130 KHIVEGTKASLKRLDMDYVDVIYCHRP---------DTSTPIEETVRAMNYVIDKGWAFYWGT---SE--WSAQQITEAW 195 (360)
Q Consensus 130 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p---------~~~~~~~~~~~al~~L~~~G~ir~iGv---s~--~~~~~l~~~~ 195 (360)
+.+++. ...|.+.|-++.-=++ +....++.+.++++.+++.|+--.+.+ +. ++++.+.++.
T Consensus 78 ~~i~~a-----~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~ 152 (265)
T cd03174 78 KGIERA-----LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVA 152 (265)
T ss_pred hhHHHH-----HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHH
Confidence 223322 2335555544442110 011134567788888888887555544 34 6667777766
Q ss_pred HHHhhcC
Q 018137 196 GIAERLD 202 (360)
Q Consensus 196 ~~~~~~~ 202 (360)
+.+.+.|
T Consensus 153 ~~~~~~g 159 (265)
T cd03174 153 KALEEAG 159 (265)
T ss_pred HHHHHcC
Confidence 6665544
No 108
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=39.08 E-value=3e+02 Score=25.02 Aligned_cols=126 Identities=10% Similarity=0.228 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEecccCCCCCh---------HHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCC
Q 018137 57 GNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGR---------AEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGL 127 (360)
Q Consensus 57 ~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~---------sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~ 127 (360)
+...+.++..++.+..-+.||.+|+...-=+.+. .++.+-+..+... ++.++....... ..
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~---------~~ 83 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYG---------ND 83 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCC---------CC
Confidence 3356778999999999999999999863222111 1566666555311 133444443321 01
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeec---cCCCCHHHHHHHHHHHhhcC
Q 018137 128 SRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWG---TSEWSAQQITEAWGIAERLD 202 (360)
Q Consensus 128 ~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iG---vs~~~~~~l~~~~~~~~~~~ 202 (360)
..+.+.. + ...|++.|-++. ....++.+.+..+..++.|..-.++ .+.++++.+.++.+.+.+.|
T Consensus 84 ~~~~l~~----a-~~~gv~~iri~~-----~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g 151 (266)
T cd07944 84 DIDLLEP----A-SGSVVDMIRVAF-----HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIK 151 (266)
T ss_pred CHHHHHH----H-hcCCcCEEEEec-----ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCC
Confidence 2222222 2 233444433332 2335666677777777777654454 23466666666665555443
No 109
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=38.92 E-value=1.6e+02 Score=28.28 Aligned_cols=27 Identities=7% Similarity=0.114 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEec
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCH 154 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH 154 (360)
.+.+.+++.++..+ .|+.++|.+|.+.
T Consensus 167 qt~~~~~~~l~~~~-~l~~~~is~y~l~ 193 (370)
T PRK06294 167 QSLSDFIVDLHQAI-TLPITHISLYNLT 193 (370)
T ss_pred CCHHHHHHHHHHHH-ccCCCeEEEeeeE
Confidence 56777777776655 4778888887775
No 110
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=38.88 E-value=3e+02 Score=26.30 Aligned_cols=106 Identities=8% Similarity=-0.052 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCc
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGP 206 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~ 206 (360)
++. .-+..+-+.|.++|+++|++-..-+|...-.+.+.-+.++.+++...++..++. .+...++.+.+.. .+.
T Consensus 65 ~s~-e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~-~n~~die~A~~~g-----~~~ 137 (347)
T PLN02746 65 VPT-SVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLT-PNLKGFEAAIAAG-----AKE 137 (347)
T ss_pred CCH-HHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEc-CCHHHHHHHHHcC-----cCE
Confidence 444 345567777999999999987554553221122222333334332334444553 4778888877642 111
Q ss_pred eeeccccccc------ccchh-----hhchhhHHHhcCCeEEEe
Q 018137 207 IVEQPEYNML------SRHKV-----EAEYLPLYSNYGIGLTTW 239 (360)
Q Consensus 207 ~~~q~~~n~~------~~~~~-----~~~~l~~~~~~gi~vi~~ 239 (360)
..+-+.-|-. +.... -.+.+++++++|+.+.++
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1111111111 11110 135688999999988543
No 111
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=38.78 E-value=1.7e+02 Score=23.97 Aligned_cols=63 Identities=10% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhC--CCccceEEecCCCCCCCHHHHHHHHHHHHHc
Q 018137 105 KRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLD--MDYVDVIYCHRPDTSTPIEETVRAMNYVIDK 175 (360)
Q Consensus 105 ~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~ 175 (360)
+|=-+.|+-|++. -..+..|++.+.++++.+. ....|++++.......++.++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~--------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK--------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc--------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 4656777778741 2667788899998888663 3568999999887767777777777666554
No 112
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=38.09 E-value=1.3e+02 Score=28.67 Aligned_cols=87 Identities=11% Similarity=-0.017 Sum_probs=52.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHcCcee-eeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhh
Q 018137 149 DVIYCHRPDTSTPIEETVRAMNYVIDKGWAF-YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLP 227 (360)
Q Consensus 149 Dl~~lH~p~~~~~~~~~~~al~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~ 227 (360)
++.++-.|-+.. -++.+.+|+++..+. ..|=+.++..++.++++.. -++++|+....+---..-..+..
T Consensus 215 ~~~~iEeP~~~~----~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~------~~d~~~~d~~~~GGit~~~~~~~ 284 (365)
T cd03318 215 GVELIEQPVPRE----NLDGLARLRSRNRVPIMADESVSGPADAFELARRG------AADVFSLKIAKSGGLRRAQKVAA 284 (365)
T ss_pred CcceeeCCCCcc----cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC------CCCeEEEeecccCCHHHHHHHHH
Confidence 445566554432 356777787765554 4566777888888877642 25566665544321111246788
Q ss_pred HHHhcCCeEEEecccccc
Q 018137 228 LYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 228 ~~~~~gi~vi~~~pl~~G 245 (360)
+|+++|+.++..+.+.++
T Consensus 285 ~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 285 IAEAAGIALYGGTMLESS 302 (365)
T ss_pred HHHHcCCceeecCcchhH
Confidence 999999998865544443
No 113
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=37.57 E-value=3.4e+02 Score=25.22 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCCeEecc--cCC--CCChH-HHHHH-------HHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHH
Q 018137 65 AKSLLQCCRDHGVNFFDNA--EVY--ANGRA-EEIMG-------QAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHI 132 (360)
Q Consensus 65 ~~~~l~~A~~~Gin~~DTA--~~Y--g~G~s-E~~lG-------~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i 132 (360)
+...+..++..|++|+|.- +.. +.|.+ ++++. ++..+.|+ |-.+.++ =. + ..+++.+
T Consensus 74 ~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi-~~~li~~-~~---r------~~~~~~~ 142 (324)
T TIGR01430 74 AYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGI-KSRLILC-GM---R------HKQPEAA 142 (324)
T ss_pred HHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCC-eEEEEEE-Ee---C------CCCHHHH
Confidence 5566777889999999942 110 11221 23332 22223231 2222222 11 0 1346677
Q ss_pred HHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCC-CHHHHHHHHHHHhhcCCCCceeecc
Q 018137 133 VEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEW-SAQQITEAWGIAERLDLVGPIVEQP 211 (360)
Q Consensus 133 ~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~~~~~q~ 211 (360)
++.++..++ .+-+.+--+-++......+.+.....++..++.|+-..+=++.. +...+..++... | +..+-.
T Consensus 143 ~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~---g---~~ri~H 215 (324)
T TIGR01430 143 EETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDL---G---ATRIGH 215 (324)
T ss_pred HHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHc---C---chhcch
Confidence 777776664 22222333345544334445666788888888887666666644 333444443321 1 222222
Q ss_pred cccccccchhhhchhhHHHhcCCeEEEecccc
Q 018137 212 EYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLA 243 (360)
Q Consensus 212 ~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~ 243 (360)
-+++.+ ..+.+..++++|+.+. ..|..
T Consensus 216 g~~l~~----~~~~i~~l~~~gi~v~-~cP~S 242 (324)
T TIGR01430 216 GVRALE----DPELLKRLAQENITLE-VCPTS 242 (324)
T ss_pred hhhhcc----CHHHHHHHHHcCceEE-ECCcc
Confidence 222211 1346888999998863 34443
No 114
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=37.43 E-value=6.4e+02 Score=28.53 Aligned_cols=96 Identities=10% Similarity=-0.035 Sum_probs=55.8
Q ss_pred HhhCCCccceEEecCCCCCCCHHHHH-HHHHHHHHcCce--eeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccc
Q 018137 141 KRLDMDYVDVIYCHRPDTSTPIEETV-RAMNYVIDKGWA--FYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLS 217 (360)
Q Consensus 141 ~~Lg~d~iDl~~lH~p~~~~~~~~~~-~al~~L~~~G~i--r~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~ 217 (360)
-.-|-+.||+-.= ....+-++.+ ..+..+..+-.+ --|-|-+++++.++.+++.+. -.+.+|-+..--.+
T Consensus 378 ve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~----G~~IINsIs~~~g~ 450 (1178)
T TIGR02082 378 VENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQ----GKCIVNSISLKDGE 450 (1178)
T ss_pred HHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcC----CCCEEEeCCCCCCC
Confidence 3568899998752 1112223333 344444333222 225566999999999988754 23455544432121
Q ss_pred cchhhhchhhHHHhcCCeEEEecccccc
Q 018137 218 RHKVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 218 ~~~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
. .+ .++++.++++|..++.+.-=..|
T Consensus 451 ~-~~-~~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 451 E-RF-IETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred c-cH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 1 11 26899999999999998643334
No 115
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.02 E-value=3.4e+02 Score=26.17 Aligned_cols=90 Identities=10% Similarity=0.102 Sum_probs=56.4
Q ss_pred EecCCCCC-----------CCHHHHHHHHHHHHH-cC------ceeeeccC--CCCHHHHHHHHHHHhhcCCCCceeecc
Q 018137 152 YCHRPDTS-----------TPIEETVRAMNYVID-KG------WAFYWGTS--EWSAQQITEAWGIAERLDLVGPIVEQP 211 (360)
Q Consensus 152 ~lH~p~~~-----------~~~~~~~~al~~L~~-~G------~ir~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~~q~ 211 (360)
.||.+++. .+++++++++.+..+ .| .|+++=|. |.+.+.++++.++++.. +..++-+
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l---~~~VnLI 297 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDT---PCKINLI 297 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcC---CceEEEe
Confidence 38987653 245667766555543 32 25554444 67788888888887753 3567888
Q ss_pred cccccccchh----h---hchhhHHHhcCCeEEEeccccc
Q 018137 212 EYNMLSRHKV----E---AEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 212 ~~n~~~~~~~----~---~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
+||.+....+ . ..+.+..+++|+.+.....-+.
T Consensus 298 PYN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 337 (372)
T PRK11194 298 PWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGD 337 (372)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 9998653211 1 2345667788999887655443
No 116
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=36.91 E-value=3.5e+02 Score=25.17 Aligned_cols=151 Identities=20% Similarity=0.225 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEecCCCCCC----CHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCC
Q 018137 129 RKHIVEGTKASLKRLDMDYVDVIYCHRPDTST----PIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLV 204 (360)
Q Consensus 129 ~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~----~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~ 204 (360)
.+.+++.+.+-+++.|+|++=++.+-+-.+.. ...+.+++|++..+++.- ..++..+...... . -
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~------~~~aS~~YA~AAl-~-~--- 199 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDP------EISASMLYAYAAL-E-A--- 199 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-T------THHHHHHHHHHHH-H-T---
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCC------cCChHHHHHHHHH-H-C---
Confidence 46788999999999998865455444433311 223467788887776542 1233333332222 1 1
Q ss_pred Cceee-cccccccccchhhhchhhHHHhcCCeEEEe---cccccccccccccCCCCCCCCccchhhhhhhhcchhhHHHH
Q 018137 205 GPIVE-QPEYNMLSRHKVEAEYLPLYSNYGIGLTTW---SPLASGVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVL 280 (360)
Q Consensus 205 ~~~~~-q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~---~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 280 (360)
.+.++ =.+-+..+ ...+.++++++|+.+++- ++++.| ..
T Consensus 200 g~~fvN~tP~~~a~----~P~l~ela~~~gvpi~GdD~KT~lAAp---------------------------------lv 242 (295)
T PF07994_consen 200 GVPFVNGTPSNIAD----DPALVELAEEKGVPIAGDDGKTPLAAP---------------------------------LV 242 (295)
T ss_dssp TEEEEE-SSSTTTT----SHHHHHHHHHHTEEEEESSBS-HHHHH---------------------------------HH
T ss_pred CCCeEeccCccccC----CHHHHHHHHHcCCCeecchHhhhhhhH---------------------------------HH
Confidence 13332 22222221 136788999999987652 122222 22
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhh
Q 018137 281 NKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKA 330 (360)
Q Consensus 281 ~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a 330 (360)
--+-++.++|.+.|+.-.+-.+.|.+..|.+ =+|......+.+..+.
T Consensus 243 lDLirl~~la~r~g~~Gv~~~ls~ffK~P~~---~~g~~~~~~l~~q~~~ 289 (295)
T PF07994_consen 243 LDLIRLAKLALRRGMGGVQEWLSFFFKSPMV---PPGPPQEHDLFEQYEM 289 (295)
T ss_dssp HHHHHHHHHHHHTTS-EEHHHHHHHBSS-T-----TTSTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCChhHHHHHHhcCCCc---cCCCCCCCcHHHHHHH
Confidence 2345778899999998888899999998863 5677776666444333
No 117
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=36.83 E-value=3.4e+02 Score=25.01 Aligned_cols=178 Identities=12% Similarity=0.026 Sum_probs=89.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCCeEeccc------CCCCChHHHHHHHHHHhcCCCCCc--------------------
Q 018137 55 SFGNQLDVKEAKSLLQCCRDHGVNFFDNAE------VYANGRAEEIMGQAIRELGWKRSD-------------------- 108 (360)
Q Consensus 55 ~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~------~Yg~G~sE~~lG~al~~~~~~R~~-------------------- 108 (360)
..+..++.++..++++.-.+.||..|+... ....+++++.+...-+ . +.-.
T Consensus 18 ~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~-~--~~~~~~~l~~~~~~ie~A~~~g~~ 94 (287)
T PRK05692 18 NEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQR-R--PGVTYAALTPNLKGLEAALAAGAD 94 (287)
T ss_pred CcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhc-c--CCCeEEEEecCHHHHHHHHHcCCC
Confidence 344457789999999999999999999872 2222345555544322 1 1111
Q ss_pred -EEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCC--ccceEE---ecCCCC-CCCHHHHHHHHHHHHHcCceeee
Q 018137 109 -IVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMD--YVDVIY---CHRPDT-STPIEETVRAMNYVIDKGWAFYW 181 (360)
Q Consensus 109 -v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d--~iDl~~---lH~p~~-~~~~~~~~~al~~L~~~G~ir~i 181 (360)
+.+...++-. +.....+.++++..+.+++..+..... .+.... +-.|+. ..+.+.+.+..+++.+.| +..|
T Consensus 95 ~v~i~~~~s~~-~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~d~i 172 (287)
T PRK05692 95 EVAVFASASEA-FSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG-CYEI 172 (287)
T ss_pred EEEEEEecCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC-CcEE
Confidence 1111111000 000012345555555555555533221 222211 122332 345677788888888888 4667
Q ss_pred ccC----CCCHHHHHHHHHHHhhcCCCCceeecccccccccchhh-hchhhHHHhcCCeEEEeccc
Q 018137 182 GTS----EWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVE-AEYLPLYSNYGIGLTTWSPL 242 (360)
Q Consensus 182 Gvs----~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~~l~~~~~~gi~vi~~~pl 242 (360)
.++ ...|.++.++++..+.. ++. +.+.+|.-+....- ...+ .+-+.|+..+--+..
T Consensus 173 ~l~DT~G~~~P~~v~~lv~~l~~~--~~~--~~i~~H~Hn~~Gla~AN~l-aA~~aG~~~id~s~~ 233 (287)
T PRK05692 173 SLGDTIGVGTPGQVRAVLEAVLAE--FPA--ERLAGHFHDTYGQALANIY-ASLEEGITVFDASVG 233 (287)
T ss_pred EeccccCccCHHHHHHHHHHHHHh--CCC--CeEEEEecCCCCcHHHHHH-HHHHhCCCEEEEEcc
Confidence 655 55788888887766532 111 12334433322100 1122 344678887754443
No 118
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=36.75 E-value=83 Score=26.59 Aligned_cols=64 Identities=25% Similarity=0.444 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHH
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVE 134 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~ 134 (360)
....-+-....+.|++.....-. ++.+..|-++|+..- .+.+++|+| .|.| +...|.+++.+.+
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~~v---~Dd~~~I~~~l~~~~-~~~dlVItt-GG~G---~t~~D~t~ea~~~ 82 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVTVV---GDDEDRIAEALRRAS-ERADLVITT-GGLG---PTHDDLTREAVAK 82 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEe---CCCHHHHHHHHHHHH-hCCCEEEEC-CCCC---CCCCChHHHHHHH
Confidence 33444444455789987665444 344777888887542 477899888 4433 2333444444433
No 119
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=36.74 E-value=53 Score=29.63 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=53.3
Q ss_pred HHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHH-HHHHHHcCceeeeccCC----CCHHHHHHHHHHHhhcCCCCcee
Q 018137 134 EGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRA-MNYVIDKGWAFYWGTSE----WSAQQITEAWGIAERLDLVGPIV 208 (360)
Q Consensus 134 ~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~a-l~~L~~~G~ir~iGvs~----~~~~~l~~~~~~~~~~~~~~~~~ 208 (360)
..+++.|+-.| +|||++=+-|-......+++++. .+-+++-|.--+.|=.- +....+.+.++.++..| |.+
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lG---f~~ 100 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELG---FDA 100 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT----SE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcC---CCE
Confidence 46777888888 99999999987655444444433 33334445444444110 01234567777777765 555
Q ss_pred ecccccccccchh-hhchhhHHHhcCCeEEE
Q 018137 209 EQPEYNMLSRHKV-EAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 209 ~q~~~n~~~~~~~-~~~~l~~~~~~gi~vi~ 238 (360)
+.+.-..++-... ...++..+++.|..|++
T Consensus 101 IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 101 IEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp EEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred EEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 5554444443321 23567777777777654
No 120
>PRK05985 cytosine deaminase; Provisional
Probab=36.72 E-value=3.9e+02 Score=25.59 Aligned_cols=170 Identities=17% Similarity=0.085 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCCCeE----ecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHH
Q 018137 63 KEAKSLLQCCRDHGVNFF----DNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKA 138 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~----DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 138 (360)
..+...+..++.+|++++ |.-+.++. .+-+.+-++.++.. .+-++-+..-.. ...+........+++
T Consensus 98 ~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~v~~~~-------~g~~~~~~~~~ll~~ 168 (391)
T PRK05985 98 ERALALARAAAAAGTTAMRSHVDVDPDAGL-RHLEAVLAARETLR-GLIDIQIVAFPQ-------SGVLSRPGTAELLDA 168 (391)
T ss_pred HHHHHHHHHHHhcCcceEEeeEccCCCccc-chHHHHHHHHHHhh-CcccEEEEeccC-------ccccCCcCHHHHHHH
Confidence 346666899999999987 43232321 11222333333311 121222222211 111222122344555
Q ss_pred HHHhhCCCccceEEecCC-CCCCCHHHHH-HHHHHHHHcCceeeeccCCC---CHHHHHHHHHHHhhcCCCCceeecccc
Q 018137 139 SLKRLDMDYVDVIYCHRP-DTSTPIEETV-RAMNYVIDKGWAFYWGTSEW---SAQQITEAWGIAERLDLVGPIVEQPEY 213 (360)
Q Consensus 139 sL~~Lg~d~iDl~~lH~p-~~~~~~~~~~-~al~~L~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~~~~~~~q~~~ 213 (360)
.|+. |. |+.---.| ......++.+ +.++...+.|+.-++-+... ....+.++.+.+...|......+..-.
T Consensus 169 ~l~~-g~---~~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~ 244 (391)
T PRK05985 169 ALRA-GA---DVVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAF 244 (391)
T ss_pred HHHc-CC---CEEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhh
Confidence 5553 32 32222112 1122223343 44455567786654444332 234555666655544431111111111
Q ss_pred cccccchh-hhchhhHHHhcCCeEEEecccccc
Q 018137 214 NMLSRHKV-EAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 214 n~~~~~~~-~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
.+-..... -.+.++.+++.|+.++.-.|+..|
T Consensus 245 ~l~~~~~~~~~~~i~~lae~g~~v~~~~~~~~~ 277 (391)
T PRK05985 245 CLGDLPEREVDRLAERLAEAGVAIMTNAPGSVP 277 (391)
T ss_pred hhhcCCHHHHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 11111110 124678888999998765455443
No 121
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=35.89 E-value=1.4e+02 Score=24.94 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHH
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKAS 139 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~s 139 (360)
..++...-.+.+|-+.||.+|=.|..||. +-..+-+.+.. .=++++.|-- .|...+ ....+...+++-
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg----~lkvVvVthh-~Gf~e~-----g~~e~~~E~~~~ 78 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG----DLKVVVVTHH-AGFEEK-----GTQEMDEEVRKE 78 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc----CceEEEEEee-cccccC-----CceecCHHHHHH
Confidence 34556666788899999999999999964 33333333321 1236666654 233212 223455667888
Q ss_pred HHhhCCC
Q 018137 140 LKRLDMD 146 (360)
Q Consensus 140 L~~Lg~d 146 (360)
|+..|.+
T Consensus 79 L~erGa~ 85 (186)
T COG1751 79 LKERGAK 85 (186)
T ss_pred HHHcCce
Confidence 8888854
No 122
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=35.71 E-value=4.1e+02 Score=26.18 Aligned_cols=105 Identities=17% Similarity=0.078 Sum_probs=59.1
Q ss_pred cCCCCChHHHHHHHHHHhc--CCCC-CcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCC
Q 018137 84 EVYANGRAEEIMGQAIREL--GWKR-SDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTST 160 (360)
Q Consensus 84 ~~Yg~G~sE~~lG~al~~~--~~~R-~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~ 160 (360)
-+||. |+-|-+++.+. .++. +=++|.|-+.. ...-+++..-+++.-++++ +.++.+|.|+...
T Consensus 97 ~V~Gg---~~~L~~aI~~~~~~~~p~~~I~V~~tC~~--------~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g 162 (443)
T TIGR01862 97 IVFGG---EKKLKKLIHEAFTEFPLIKAISVYATCPT--------GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAG 162 (443)
T ss_pred eeeCc---HHHHHHHHHHHHHhCCccceEEEECCChH--------HHhccCHHHHHHHHHHhcC---CCEEEEecCCccC
Confidence 46764 66666666632 1333 55777777632 1334455555555444554 7899999987654
Q ss_pred C-----HHHHHHH-HHHHH--------HcCceeeeccCCCCHHHHHHHHHHHhhcCC
Q 018137 161 P-----IEETVRA-MNYVI--------DKGWAFYWGTSEWSAQQITEAWGIAERLDL 203 (360)
Q Consensus 161 ~-----~~~~~~a-l~~L~--------~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 203 (360)
. +..+.++ ++.+. +.+.|.-||-.++ +..+.++.+.....|+
T Consensus 163 ~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl 218 (443)
T TIGR01862 163 VSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGI 218 (443)
T ss_pred CccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCC
Confidence 2 2223333 33443 2467888885554 3455555556666553
No 123
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=35.69 E-value=2.4e+02 Score=26.94 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=58.5
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHH-cCc---eeeeccC--CCCHHHHHHHHHHHhhcCCCCceeecccc
Q 018137 151 IYCHRPDTS-----------TPIEETVRAMNYVID-KGW---AFYWGTS--EWSAQQITEAWGIAERLDLVGPIVEQPEY 213 (360)
Q Consensus 151 ~~lH~p~~~-----------~~~~~~~~al~~L~~-~G~---ir~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~~q~~~ 213 (360)
+-||.+++. .+++++++++.+..+ .|. |+++=+. |.+.+++.++.++++.. ++.++-++|
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l---~~~VnLIPy 295 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGT---KCKVNLIPW 295 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcC---CCceEEEec
Confidence 679998742 246888888876544 442 3333333 56668888888887653 356777788
Q ss_pred cccccchh----h---hchhhHHHhcCCeEEEecccccc
Q 018137 214 NMLSRHKV----E---AEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 214 n~~~~~~~----~---~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
|++....+ . ..+.++.+++|+.+......+.-
T Consensus 296 np~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~d 334 (355)
T TIGR00048 296 NPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDD 334 (355)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcc
Confidence 87653221 1 23456677889999887766543
No 124
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=35.69 E-value=2.3e+02 Score=25.52 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=60.1
Q ss_pred HHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHH-HHHcCceeeeccC----CCCHHHHHHHHHHHhhcCCCCcee
Q 018137 134 EGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNY-VIDKGWAFYWGTS----EWSAQQITEAWGIAERLDLVGPIV 208 (360)
Q Consensus 134 ~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~-L~~~G~ir~iGvs----~~~~~~l~~~~~~~~~~~~~~~~~ 208 (360)
+.+++-|+-+| +|||.+=+-|-......++.++..-+ .++-|.--+.|=+ -+....+.+.++.|++.| +.+
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lG---f~~ 87 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELG---FEA 87 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcC---CCE
Confidence 56777888888 89999999886655444444444434 4445655555511 011134566677777765 566
Q ss_pred ecccccccccchh-hhchhhHHHhcCCeEEE
Q 018137 209 EQPEYNMLSRHKV-EAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 209 ~q~~~n~~~~~~~-~~~~l~~~~~~gi~vi~ 238 (360)
+.+.-..++-... ...+++..+++|..+..
T Consensus 88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 88 VEISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 6655554443321 13467777777777653
No 125
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=35.54 E-value=1.8e+02 Score=27.74 Aligned_cols=88 Identities=10% Similarity=-0.065 Sum_probs=55.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHHHHcCcee-eeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchh
Q 018137 148 VDVIYCHRPDTSTPIEETVRAMNYVIDKGWAF-YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYL 226 (360)
Q Consensus 148 iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l 226 (360)
.++.++-.|-+.. -++.+.+|++...+. ..|-|.++..++.++++.. ..+++|+...-+---..-..+.
T Consensus 213 ~~~~~iEeP~~~~----d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~------~~d~~~~d~~~~GGi~~~~~i~ 282 (368)
T TIGR02534 213 AGVELIEQPTPAE----NREALARLTRRFNVPIMADESVTGPADALAIAKAS------AADVFALKTTKSGGLLESKKIA 282 (368)
T ss_pred cChhheECCCCcc----cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC------CCCEEEEcccccCCHHHHHHHH
Confidence 3555566654432 256667777765554 5677788888887776542 2566777655432111124678
Q ss_pred hHHHhcCCeEEEecccccc
Q 018137 227 PLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 227 ~~~~~~gi~vi~~~pl~~G 245 (360)
.+|+.+|+.++..+.+.++
T Consensus 283 ~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 283 AIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHcCCceeeecchhhH
Confidence 8999999998876655544
No 126
>PRK09061 D-glutamate deacylase; Validated
Probab=35.53 E-value=4.7e+02 Score=26.33 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhC
Q 018137 65 AKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLD 144 (360)
Q Consensus 65 ~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg 144 (360)
..++++.|++.|+..|=+...|..+.+...+-+.++.. .+-+..|...+. .....+......++++.++...
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A--~~~g~~v~~H~e------~~~~~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA--ARAGVPTYTHVR------YLSNVDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH--HHcCCEEEEEec------CcccCCchhHHHHHHHHHHHHH
Confidence 66778889999999998766675455566566666542 233556666652 1110112222334444443222
Q ss_pred CCccceEEecCCCC-CCCHHHHHHHHHHHHHcCceeeeccCCCC
Q 018137 145 MDYVDVIYCHRPDT-STPIEETVRAMNYVIDKGWAFYWGTSEWS 187 (360)
Q Consensus 145 ~d~iDl~~lH~p~~-~~~~~~~~~al~~L~~~G~ir~iGvs~~~ 187 (360)
.--.-+...|-... .....+.++.+++++++|.--..-++.|.
T Consensus 243 ~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 243 ETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 11133566675331 22457788999999999854444455444
No 127
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=35.51 E-value=4.3e+02 Score=25.79 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=54.4
Q ss_pred cCCCCChHHHHHHHHHHhc--CCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhC-CCccceEEecCCCCCC
Q 018137 84 EVYANGRAEEIMGQAIREL--GWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLD-MDYVDVIYCHRPDTST 160 (360)
Q Consensus 84 ~~Yg~G~sE~~lG~al~~~--~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lH~p~~~~ 160 (360)
-.||. |+.|-+++++. ..+.+-++|.|-+.. ..--+++..-+++.-++.. --.+.++.+|.|+...
T Consensus 61 ~V~Gg---~~~L~~~i~~~~~~~~p~~I~v~~tC~~--------~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g 129 (428)
T cd01965 61 AVFGG---EDNLIEALKNLLSRYKPDVIGVLTTCLT--------ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKG 129 (428)
T ss_pred eeECc---HHHHHHHHHHHHHhcCCCEEEEECCcch--------hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCC
Confidence 45664 67777777643 123344677776631 1223334443333322211 0236788888887765
Q ss_pred CH----HHHHHHHHHH-------HHcCceeeeccCCCCHHHHHHHHHHHhhcC
Q 018137 161 PI----EETVRAMNYV-------IDKGWAFYWGTSEWSAQQITEAWGIAERLD 202 (360)
Q Consensus 161 ~~----~~~~~al~~L-------~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 202 (360)
.. +.++++|-+. ++.++|.-||-++.....+.++.+.....|
T Consensus 130 ~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~G 182 (428)
T cd01965 130 SHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFG 182 (428)
T ss_pred cHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcC
Confidence 43 2233333322 134668888866654434444444555555
No 128
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=35.36 E-value=2.9e+02 Score=23.81 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEecccCCC-CChH---HHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHH
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFDNAEVYA-NGRA---EEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEG 135 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-~G~s---E~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~ 135 (360)
.+.++...+.+.|.++|..|+=|+..|. .|.+ -+.+.+.++ .. +-.|+.-|. .+.++..+.
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~------~~--v~ik~aGGi-------kt~~~~l~~ 192 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG------GR--VGVKAAGGI-------RTLEDALAM 192 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC------CC--ceEEEeCCC-------CCHHHHHHH
Confidence 4578899999999999999999998885 2322 244555543 11 344442111 367888888
Q ss_pred HHHHHHhhCCC
Q 018137 136 TKASLKRLDMD 146 (360)
Q Consensus 136 ~~~sL~~Lg~d 146 (360)
++.-..|+|++
T Consensus 193 ~~~g~~riG~s 203 (203)
T cd00959 193 IEAGATRIGTS 203 (203)
T ss_pred HHhChhhccCC
Confidence 88878888863
No 129
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=35.34 E-value=4e+02 Score=25.41 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=74.3
Q ss_pred cccCCCCCHHHHHHHHHHHHHcCCCeEecccCCC------CChHHHHHHHHHHhcCCCCCcEEEEe-cc-cc------CC
Q 018137 54 VSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYA------NGRAEEIMGQAIRELGWKRSDIVVST-KI-FW------GG 119 (360)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg------~G~sE~~lG~al~~~~~~R~~v~i~t-K~-~~------~~ 119 (360)
+..+..++.++-.++++.-.+.||+.|+....-. .++.++++-.. +.. ..-.+.... .. +. +.
T Consensus 59 Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i-~~~--~~~~~~~l~~n~~die~A~~~g~ 135 (347)
T PLN02746 59 QNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAV-RNL--EGARFPVLTPNLKGFEAAIAAGA 135 (347)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHH-Hhc--cCCceeEEcCCHHHHHHHHHcCc
Confidence 4556678889999999999999999999874332 13445554443 321 111111111 00 00 00
Q ss_pred C--------C----CCCCCCCHHHHHHHHHHHHHhhCC--CccceEE---ecCCCC-CCCHHHHHHHHHHHHHcCceeee
Q 018137 120 Q--------G----PNDKGLSRKHIVEGTKASLKRLDM--DYVDVIY---CHRPDT-STPIEETVRAMNYVIDKGWAFYW 181 (360)
Q Consensus 120 ~--------~----~~~~~~~~~~i~~~~~~sL~~Lg~--d~iDl~~---lH~p~~-~~~~~~~~~al~~L~~~G~ir~i 181 (360)
. . ....+.+++.+.+.+.+..+...- -++..++ +-+|+. ..+.+.+++..+++.+.| +..|
T Consensus 136 ~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G-ad~I 214 (347)
T PLN02746 136 KEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG-CYEI 214 (347)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC-CCEE
Confidence 0 0 001235556666555555543321 2333333 234433 235666777777777777 3456
Q ss_pred ccC----CCCHHHHHHHHHHHh
Q 018137 182 GTS----EWSAQQITEAWGIAE 199 (360)
Q Consensus 182 Gvs----~~~~~~l~~~~~~~~ 199 (360)
.++ -..|.++.++++..+
T Consensus 215 ~l~DT~G~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 215 SLGDTIGVGTPGTVVPMLEAVM 236 (347)
T ss_pred EecCCcCCcCHHHHHHHHHHHH
Confidence 544 345777777766654
No 130
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=35.32 E-value=2.1e+02 Score=27.74 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEecC-CCCC-----------C-CHHH---HH-HHHHHHHHcCceeeeccCCCC
Q 018137 126 GLSRKHIVEGTKASLKRLDMDYVDVIYCHR-PDTS-----------T-PIEE---TV-RAMNYVIDKGWAFYWGTSEWS 187 (360)
Q Consensus 126 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~-p~~~-----------~-~~~~---~~-~al~~L~~~G~ir~iGvs~~~ 187 (360)
+.+.+.+++.++..+ .|+.++|.+|.|.- |... . +.++ .+ .+.+.|.+.|.. ++++|||.
T Consensus 178 gqt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa 254 (400)
T PRK07379 178 HQTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYA 254 (400)
T ss_pred CCCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheE
Confidence 367788888777655 48899999998863 2210 0 0111 22 355566777774 47777776
No 131
>PRK03670 competence damage-inducible protein A; Provisional
Probab=34.96 E-value=1.1e+02 Score=27.84 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHH
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGT 136 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~ 136 (360)
..+.-+-....+.|++.....-.. +.+..|-++++..-....+++|+| .|.| +...|.+++.+.+.+
T Consensus 20 tN~~~la~~L~~~G~~v~~~~iV~---Dd~~~I~~~l~~a~~~~~DlVItt-GGlG---pt~dD~T~eava~a~ 86 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRITTVG---DDVEEIKSVVLEILSRKPEVLVIS-GGLG---PTHDDVTMLAVAEAL 86 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEcC---CCHHHHHHHHHHHhhCCCCEEEEC-CCcc---CCCCCchHHHHHHHh
Confidence 445455555678899876655443 347777788875321235888888 4443 344456666655543
No 132
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.85 E-value=3.5e+02 Score=25.81 Aligned_cols=93 Identities=12% Similarity=0.043 Sum_probs=61.4
Q ss_pred eEEecCCCCC-----------CCHHHHHHHHHHHHHcC--ce--eeecc--CCCCHHHHHHHHHHHhhcCCCCceeeccc
Q 018137 150 VIYCHRPDTS-----------TPIEETVRAMNYVIDKG--WA--FYWGT--SEWSAQQITEAWGIAERLDLVGPIVEQPE 212 (360)
Q Consensus 150 l~~lH~p~~~-----------~~~~~~~~al~~L~~~G--~i--r~iGv--s~~~~~~l~~~~~~~~~~~~~~~~~~q~~ 212 (360)
.+-||.|+.. .+++++++++.+..++. +| -++=+ -|.+.+++.++.++++. ++..++-++
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~---~~~~VNLIp 286 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRG---IDCRVNLIR 286 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcC---CCceEEEEe
Confidence 4788988652 35788888888865432 22 22223 27788888888888764 446788889
Q ss_pred ccccccchh----h---hchhhHHHhcCCeEEEecccccc
Q 018137 213 YNMLSRHKV----E---AEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 213 ~n~~~~~~~----~---~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
||+.....+ + ..+.+..+++|+.+......+.-
T Consensus 287 ~Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~d 326 (345)
T PRK14466 287 FHAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGED 326 (345)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 997543211 1 24566678899999888766543
No 133
>PTZ00081 enolase; Provisional
Probab=34.84 E-value=3.8e+02 Score=26.49 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeccccCC-----CCCC---------C--CCCCHHHHHHHHHHHHHhhCCCccceEEecC
Q 018137 92 EEIMGQAIRELGWKRSDIVVSTKIFWGG-----QGPN---------D--KGLSRKHIVEGTKASLKRLDMDYVDVIYCHR 155 (360)
Q Consensus 92 E~~lG~al~~~~~~R~~v~i~tK~~~~~-----~~~~---------~--~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~ 155 (360)
-+++-+++...++. .++.|+--+.... .+.. . ...+++.+.+-+.+.++.+ ++++|-.
T Consensus 231 l~ll~eAi~~ag~~-~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y-----~I~~IED 304 (439)
T PTZ00081 231 LDLLVEAIKKAGYE-GKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKY-----PIVSIED 304 (439)
T ss_pred HHHHHHHHHHcCCc-CceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcC-----CcEEEEc
Confidence 45666777776654 5576665442110 0000 0 1257777777776777665 4667777
Q ss_pred CCCCCCHHHHHHHHHHHHHcC--ceeeec--cCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHh
Q 018137 156 PDTSTPIEETVRAMNYVIDKG--WAFYWG--TSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSN 231 (360)
Q Consensus 156 p~~~~~~~~~~~al~~L~~~G--~ir~iG--vs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~ 231 (360)
|-...+ |+.+.+|.++= .+.-+| .+..+++.+.++++.- -..++|+..|-+---....++...|++
T Consensus 305 Pl~~~D----~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~------aad~i~iKvnqiGGITe~l~~a~lA~~ 374 (439)
T PTZ00081 305 PFDQDD----WEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKK------ACNALLLKVNQIGTVTEAIEAAKLAQK 374 (439)
T ss_pred CCCccc----HHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhC------CCCEEEeccccccCHHHHHHHHHHHHH
Confidence 765433 56666676653 565555 3456788888887652 256677766643321123567889999
Q ss_pred cCCeEEEe
Q 018137 232 YGIGLTTW 239 (360)
Q Consensus 232 ~gi~vi~~ 239 (360)
+|+.++..
T Consensus 375 ~Gi~~iis 382 (439)
T PTZ00081 375 NGWGVMVS 382 (439)
T ss_pred cCCcEEEe
Confidence 99998764
No 134
>PRK05660 HemN family oxidoreductase; Provisional
Probab=34.81 E-value=2.4e+02 Score=27.09 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEec-CCCCC-------C-CHHHHH----HHHHHHHHcCceeeeccCCCCH
Q 018137 126 GLSRKHIVEGTKASLKRLDMDYVDVIYCH-RPDTS-------T-PIEETV----RAMNYVIDKGWAFYWGTSEWSA 188 (360)
Q Consensus 126 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH-~p~~~-------~-~~~~~~----~al~~L~~~G~ir~iGvs~~~~ 188 (360)
+.+.+.+.+.++..++ |+.|+|.+|.+- .|+.. . .-++.+ .+.+.|.+.|.. .+++|||.-
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQ-QYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCc-EeecccccC
Confidence 3678888887777554 999999998874 23210 0 112222 344456677764 467777774
No 135
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.53 E-value=4.2e+02 Score=25.30 Aligned_cols=83 Identities=10% Similarity=0.013 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHc-Cc---eeeecc--CCCCHHHHHHHHHHHhhcCCCCceeecccccccccchh----h---hchh
Q 018137 160 TPIEETVRAMNYVIDK-GW---AFYWGT--SEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKV----E---AEYL 226 (360)
Q Consensus 160 ~~~~~~~~al~~L~~~-G~---ir~iGv--s~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~----~---~~~l 226 (360)
.+++++.+++.+..+. |. +-++=+ -|.+.+.+.++.+..+. .++.++-++||+..-..+ . ..+.
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~---~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~ 299 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKG---KYAVMNLIPYNSVDGDAYRRPSGERIVAMA 299 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhc---cccccceecCCccCCCCccCCCHHHHHHHH
Confidence 3678888888777543 42 122212 27888888888887753 346678888887543221 1 2456
Q ss_pred hHHHhcCCeEEEecccccc
Q 018137 227 PLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 227 ~~~~~~gi~vi~~~pl~~G 245 (360)
+..+++||.+......+.-
T Consensus 300 ~~L~~~gi~~tiR~~~G~d 318 (344)
T PRK14464 300 RYLHRRGVLTKVRNSAGQD 318 (344)
T ss_pred HHHHHCCceEEEECCCCCc
Confidence 6778899999888776653
No 136
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=34.10 E-value=2.5e+02 Score=24.18 Aligned_cols=40 Identities=10% Similarity=-0.018 Sum_probs=25.2
Q ss_pred ccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHH
Q 018137 147 YVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQ 190 (360)
Q Consensus 147 ~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~ 190 (360)
.+|.++||..++ . +....+.+......++.+|++++....
T Consensus 73 ~~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 73 GLDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred CCCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 378999997642 1 233444333335688999999876543
No 137
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=33.94 E-value=3.4e+02 Score=24.05 Aligned_cols=146 Identities=9% Similarity=-0.022 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCCeEecccCCCCC-hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHH
Q 018137 62 VKEAKSLLQCCRDHGVNFFDNAEVYANG-RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASL 140 (360)
Q Consensus 62 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~G-~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 140 (360)
.....+++..|.+.|+..|=.+++.... ..+. ..+.++ ++-|.+-+-.. -...+.+.. .+
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~-~~~~~~-------~i~Il~GiEi~-------~~~~~~~~~----~~ 75 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKP-ELEDLL-------GFEIFRGVEIV-------ASNPSKLRG----LV 75 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhH-HHHHhc-------CCcEEeeEEEe-------cCCHHHHHH----HH
Confidence 3467899999999999988877774321 1111 111111 23332222110 022333332 33
Q ss_pred HhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCC---CHHHHHHHHHHHhhcCCCCceeecccccccc
Q 018137 141 KRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEW---SAQQITEAWGIAERLDLVGPIVEQPEYNMLS 217 (360)
Q Consensus 141 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~ 217 (360)
++. ...+|++.+| |.. +++ ...+.+.+.|.-||-... ....-..+.+.+...| .++.+.++.+-
T Consensus 76 ~~~-~~~~d~v~v~-~~~----~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g----v~lEIn~s~~~ 142 (237)
T PRK00912 76 GKF-RKKVDVLAVH-GGD----EKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN----VAIEFNLRDIL 142 (237)
T ss_pred Hhc-cCcccEEEEe-CCC----HHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC----eEEEEEchHhh
Confidence 332 1357888899 222 222 235777888888875421 1111124445555444 24455555432
Q ss_pred cch---------hhhchhhHHHhcCCeEEEe
Q 018137 218 RHK---------VEAEYLPLYSNYGIGLTTW 239 (360)
Q Consensus 218 ~~~---------~~~~~l~~~~~~gi~vi~~ 239 (360)
... ....++.+|++.|+.++.-
T Consensus 143 ~~~~~~r~~~~~~~~~~~~~~~~~g~piiis 173 (237)
T PRK00912 143 KSRGGRRARTLSNFRDNLALARKYDFPLVLT 173 (237)
T ss_pred hhcccHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 110 0136889999999887654
No 138
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.86 E-value=2.4e+02 Score=25.31 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=32.8
Q ss_pred eccCCCCHH--HHHHHHHHHhhcCCCCceeecccccc-------cccchhhhchhhHHHhcCCeEEEeccccc
Q 018137 181 WGTSEWSAQ--QITEAWGIAERLDLVGPIVEQPEYNM-------LSRHKVEAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 181 iGvs~~~~~--~l~~~~~~~~~~~~~~~~~~q~~~n~-------~~~~~~~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
+|+|++... .+.+.++.+.+.| +..+++..+. +... .-.++...++++|+.+.++.|...
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G---~~~vEl~~~~~~~~~~~~~~~-~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELG---YDGIEIWGGRPHAFAPDLKAG-GIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcC---CCEEEEccCCccccccccCch-HHHHHHHHHHHcCCeEEEecCccc
Confidence 455544433 3566666666655 4444442110 1111 124567788899999988877543
No 139
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=33.84 E-value=63 Score=28.92 Aligned_cols=77 Identities=22% Similarity=0.382 Sum_probs=48.3
Q ss_pred CCCCcccCccccccccc--cCC--CCCHHHHHHHHHH----HHHcCCCeEeccc--CCCCChHHHHHHHHHHhcC-----
Q 018137 39 GRSGLRVSQLSYGAWVS--FGN--QLDVKEAKSLLQC----CRDHGVNFFDNAE--VYANGRAEEIMGQAIRELG----- 103 (360)
Q Consensus 39 g~tg~~vs~lglG~~~~--~~~--~~~~~~~~~~l~~----A~~~Gin~~DTA~--~Yg~G~sE~~lG~al~~~~----- 103 (360)
-.||+.+|-+||.+-+- +|+ +...+++.+++.. |.+.||+.|--|. +|=...+|+...+++....
T Consensus 64 ~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 64 QETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 36899999999998643 343 3344566666554 5678999999883 5533334555555554210
Q ss_pred CCCCcEEEEecc
Q 018137 104 WKRSDIVVSTKI 115 (360)
Q Consensus 104 ~~R~~v~i~tK~ 115 (360)
..+.+|.++--+
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 135567777665
No 140
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=33.65 E-value=1.5e+02 Score=26.87 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHhhC--------------------------CCccceEEecCCCCCCCH---HHHHHHHHHHHHcCc
Q 018137 127 LSRKHIVEGTKASLKRLD--------------------------MDYVDVIYCHRPDTSTPI---EETVRAMNYVIDKGW 177 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg--------------------------~d~iDl~~lH~p~~~~~~---~~~~~al~~L~~~G~ 177 (360)
.+..+ ++.++++|++.| ...-|+++|..|....+. .++++.|.+|+++|+
T Consensus 112 ~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 112 LNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred ccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 44455 788999999988 346799999998776654 467899999999976
Q ss_pred eeeeccCCCCHHHHHH
Q 018137 178 AFYWGTSEWSAQQITE 193 (360)
Q Consensus 178 ir~iGvs~~~~~~l~~ 193 (360)
.|=+.+|+...+.+
T Consensus 191 --tIl~vtHDL~~v~~ 204 (254)
T COG1121 191 --TVLMVTHDLGLVMA 204 (254)
T ss_pred --EEEEEeCCcHHhHh
Confidence 45566777665444
No 141
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=33.59 E-value=3.1e+02 Score=25.47 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCCCeEecccCCCCChHHHH----HHHHHHhcCCCCCcEEEEeccccCC-CCCCCCCCCHHHHHHHHHH
Q 018137 64 EAKSLLQCCRDHGVNFFDNAEVYANGRAEEI----MGQAIRELGWKRSDIVVSTKIFWGG-QGPNDKGLSRKHIVEGTKA 138 (360)
Q Consensus 64 ~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~----lG~al~~~~~~R~~v~i~tK~~~~~-~~~~~~~~~~~~i~~~~~~ 138 (360)
++.+.+-.++..|.+.| .+|.|.|-.+ .++.....+.+++.+....-.+... ......+. +-.....+
T Consensus 46 ~a~~~~~~~l~~ggrl~----~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~e---d~~~~~~~ 118 (296)
T PRK12570 46 QAVDKIVAAFKKGGRLI----YMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAE---DDPELGAQ 118 (296)
T ss_pred HHHHHHHHHHHcCCeEE----EECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccC---CcHHHHHH
Confidence 44455666788898877 4688877654 2233333344455443222221100 00000001 11222334
Q ss_pred HHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHH
Q 018137 139 SLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITE 193 (360)
Q Consensus 139 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~ 193 (360)
.+...+...=|++..-...-.+ .++.++++.+++.| ++-|++++.....+.+
T Consensus 119 ~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~ 170 (296)
T PRK12570 119 DLKAIGLTADDVVVGIAASGRT--PYVIGALEYAKQIG-ATTIALSCNPDSPIAK 170 (296)
T ss_pred HHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHH
Confidence 4555555556998887654433 46899999999998 6779988777665544
No 142
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=33.23 E-value=17 Score=34.69 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=22.1
Q ss_pred HHHcCceeeeccCCCCHHHHHHHHHHHh
Q 018137 172 VIDKGWAFYWGTSEWSAQQITEAWGIAE 199 (360)
Q Consensus 172 L~~~G~ir~iGvs~~~~~~l~~~~~~~~ 199 (360)
.---|+||++||--++.+++.++....+
T Consensus 260 eTCVGriRYlGVlLYDaDrv~eaAs~~~ 287 (513)
T COG1140 260 ETCVGRIRYLGVLLYDADRVEEAASTEN 287 (513)
T ss_pred hhhhcceeeeeeeeecHHHHHHhhcCcc
Confidence 3456999999999999998888765443
No 143
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=33.21 E-value=87 Score=26.61 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhCCCc----cceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHH
Q 018137 133 VEGTKASLKRLDMDY----VDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGI 197 (360)
Q Consensus 133 ~~~~~~sL~~Lg~d~----iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~ 197 (360)
+..++..++++|.+. ++.+.-.+ .......++.+.|+.|++.|. +-.-+||.+...+...++.
T Consensus 62 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g~-~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 62 REALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERGY-RLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHH
Confidence 455666666666541 11111111 112234567889999999884 4455888887766665544
No 144
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=33.15 E-value=2.4e+02 Score=26.95 Aligned_cols=27 Identities=19% Similarity=0.053 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEec
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCH 154 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH 154 (360)
.+.+.+++.++..+ .|+.++|.+|.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 56666666555433 4777777777665
No 145
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=33.02 E-value=3.2e+02 Score=26.97 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEe
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYC 153 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l 153 (360)
.+.+.+.+.++..+ +|+.++|.+|.+
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l 241 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGY 241 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEecc
Confidence 45666666555544 467777777655
No 146
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=32.99 E-value=3.8e+02 Score=24.43 Aligned_cols=106 Identities=15% Similarity=0.052 Sum_probs=61.4
Q ss_pred ccccccccc---cCCCCCHHHHHHHHHHHHHcCCCeEecc-cCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCC
Q 018137 47 QLSYGAWVS---FGNQLDVKEAKSLLQCCRDHGVNFFDNA-EVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGP 122 (360)
Q Consensus 47 ~lglG~~~~---~~~~~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~ 122 (360)
.||+++|.. .|.-.++....+-..+.+....|.++-= ..|. -.+++.+-+|.++ ..+++..+-|+.-...
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa-~p~~~t~~~W~~~---~p~~FrFsvK~~~~iT-- 77 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYA-PPSPETVLRWAEE---TPDDFRFSVKAPRAIT-- 77 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccC-CCCHHHHHHHHHh---CCCCeEEEEEeccccc--
Confidence 467777732 1222222222222233445556666533 3554 3568888889886 4789999999952221
Q ss_pred CCCCCCH---HHHHHHHHHHHHhhCCCccceEEecCCCCCC
Q 018137 123 NDKGLSR---KHIVEGTKASLKRLDMDYVDVIYCHRPDTST 160 (360)
Q Consensus 123 ~~~~~~~---~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~ 160 (360)
+..... ..+.+.+.+-++.|| +.+..+++.-|.+..
T Consensus 78 -H~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 78 -HQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred -chhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 111122 345555555566777 589999999887764
No 147
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.87 E-value=2.4e+02 Score=27.11 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=60.6
Q ss_pred EEecCCCC------------CCCHHHHHHHHHH-HHHcC---ceeeeccC--CCCHHHHHHHHHHHhhcCCCCceeeccc
Q 018137 151 IYCHRPDT------------STPIEETVRAMNY-VIDKG---WAFYWGTS--EWSAQQITEAWGIAERLDLVGPIVEQPE 212 (360)
Q Consensus 151 ~~lH~p~~------------~~~~~~~~~al~~-L~~~G---~ir~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~~q~~ 212 (360)
+.||.++. ..+++++++++.+ +.+.| +|+++=+. |.+.+.+.++.++++.. ...++-++
T Consensus 238 iSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~---~~~VnlIp 314 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF---FCKINLID 314 (368)
T ss_pred EEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC---CCeeEEee
Confidence 66888743 2367888888875 44555 24444333 56677788888888753 34567778
Q ss_pred ccccccchh-------hhchhhHHHhcCCeEEEeccccc
Q 018137 213 YNMLSRHKV-------EAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 213 ~n~~~~~~~-------~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
||++...++ ...+.+.++++|+.+......+.
T Consensus 315 yn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 315 YNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 888765432 13456777889999998877664
No 148
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=32.87 E-value=3.9e+02 Score=24.47 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEec---ccCCCC-----ChHHHHHHHHHHhcCCCCC-cEEEEeccccCCCCCCCCCCCHHH
Q 018137 61 DVKEAKSLLQCCRDHGVNFFDN---AEVYAN-----GRAEEIMGQAIRELGWKRS-DIVVSTKIFWGGQGPNDKGLSRKH 131 (360)
Q Consensus 61 ~~~~~~~~l~~A~~~Gin~~DT---A~~Yg~-----G~sE~~lG~al~~~~~~R~-~v~i~tK~~~~~~~~~~~~~~~~~ 131 (360)
+.++..+..+.+.+.|+..||. .+.+.. |.+.+.+-+.++.. .+. ++-|.-|++. . . +.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v--r~~~~~Pv~vKl~~-----~---~--~~ 167 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV--KKATDVPVIVKLTP-----N---V--TD 167 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH--HhccCCCEEEEeCC-----C---c--hh
Confidence 4577888888888999999985 122111 23456666666642 122 5678889842 1 1 12
Q ss_pred HHHHHHHHHHhhCCCccceEE------ecCCC--C--------CC---CHHHHHHHHHHHHHcCceeeeccCCC-CHHHH
Q 018137 132 IVEGTKASLKRLDMDYVDVIY------CHRPD--T--------ST---PIEETVRAMNYVIDKGWAFYWGTSEW-SAQQI 191 (360)
Q Consensus 132 i~~~~~~sL~~Lg~d~iDl~~------lH~p~--~--------~~---~~~~~~~al~~L~~~G~ir~iGvs~~-~~~~l 191 (360)
+ ..+-+.++..|.|.|+++- +|.-. + .. ...-.++.+.++++.=.+.-||+... +++++
T Consensus 168 ~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 168 I-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred H-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 2 2334467788888776641 12100 0 00 01124566777776556778887765 67777
Q ss_pred HHHHHHHhhcCCCCceeecccccccc-c---chhhhchhhHHHhcCC
Q 018137 192 TEAWGIAERLDLVGPIVEQPEYNMLS-R---HKVEAEYLPLYSNYGI 234 (360)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~q~~~n~~~-~---~~~~~~~l~~~~~~gi 234 (360)
.+++.. . .+.+|+-=.++. + .....++.++.+++|.
T Consensus 247 ~~~l~~-G------Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMA-G------ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHc-C------CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 777753 1 455554333322 1 1123455566666653
No 149
>PLN02681 proline dehydrogenase
Probab=32.65 E-value=5.1e+02 Score=25.77 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCCC-eEecccCCCCChHHHHHHHHHHhcCC--CCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 018137 65 AKSLLQCCRDHGVN-FFDNAEVYANGRAEEIMGQAIRELGW--KRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLK 141 (360)
Q Consensus 65 ~~~~l~~A~~~Gin-~~DTA~~Yg~G~sE~~lG~al~~~~~--~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 141 (360)
..+++++|.+.|+. +||-=..|=...-..+.-+..++..- .+.-|+++--.+. .-+.+.+...++...+
T Consensus 222 l~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~yN~~~~~~~V~~T~QaYL--------k~t~~~l~~~l~~a~~ 293 (455)
T PLN02681 222 LQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREFNKGKDRPIVYGTYQAYL--------KDARERLRLDLERSER 293 (455)
T ss_pred HHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHhccccCCCcEEEEEeCcc--------ccCHHHHHHHHHHHHh
Confidence 55788999999998 67765555443334444455554321 1334566655532 2567777777776644
Q ss_pred h---hCC-----Cccce-----EEecCCCCC-CCHHHH---H-HHHHHHHH---cCceeeeccCCCCHHHHHHHHHHHhh
Q 018137 142 R---LDM-----DYVDV-----IYCHRPDTS-TPIEET---V-RAMNYVID---KGWAFYWGTSEWSAQQITEAWGIAER 200 (360)
Q Consensus 142 ~---Lg~-----d~iDl-----~~lH~p~~~-~~~~~~---~-~al~~L~~---~G~ir~iGvs~~~~~~l~~~~~~~~~ 200 (360)
. +|+ -|+|- -++.||++. ...+++ + ..++.|.+ .|. .++.+.+|+...+..+.+....
T Consensus 294 ~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~~~~ 372 (455)
T PLN02681 294 EGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAKMNE 372 (455)
T ss_pred cCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHHHHH
Confidence 2 221 34332 112233222 122222 2 33333333 244 3778999999999999888877
Q ss_pred cCCCC---ceeecccccccccchhhhchhhHHHhcCCeEEEeccccc
Q 018137 201 LDLVG---PIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 201 ~~~~~---~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
.|+.+ -...|.-|.+.+ ++-....+.|..|.-|.|+|.
T Consensus 373 ~gi~~~~~~veF~qL~GM~d------~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 373 LGLHKGDPRVQFAQLLGMSD------NLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred cCCCCCCCCEEEeccCCCCH------HHHHHHHhcCCCEEEEeeccC
Confidence 77421 112344444332 233334567888888888774
No 150
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=32.42 E-value=4.2e+02 Score=24.75 Aligned_cols=154 Identities=10% Similarity=0.045 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHH
Q 018137 61 DVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASL 140 (360)
Q Consensus 61 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 140 (360)
+.++..+.+..+.+.|++.|=.-- + ...+.-+=+++++. .+ ++-|.-=.. ...+.+..+ .+
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~-~~~d~~~v~~vr~~-~~--~~~l~vDaN--------~~~~~~~a~-----~~ 192 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--T-PQIMHQLVKLRRLR-FP--QIPLVIDAN--------ESYDLQDFP-----RL 192 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--C-CchhHHHHHHHHHh-CC--CCcEEEECC--------CCCCHHHHH-----HH
Confidence 446667777778889999873211 1 12222333444442 12 332322221 124554432 13
Q ss_pred HhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCcee-eeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccc
Q 018137 141 KRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAF-YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRH 219 (360)
Q Consensus 141 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~ 219 (360)
++|. ..++.++-.|-.. +-++.+.+|++.-.+. ..|-|.++..++.++++.. -.+++|+...-+---
T Consensus 193 ~~l~--~~~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~------~~dvi~~d~~~~GGi 260 (324)
T TIGR01928 193 KELD--RYQLLYIEEPFKI----DDLSMLDELAKGTITPICLDESITSLDDARNLIELG------NVKVINIKPGRLGGL 260 (324)
T ss_pred HHHh--hCCCcEEECCCCh----hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcC------CCCEEEeCcchhcCH
Confidence 4443 2466777776543 3356788888765544 5578889999888876542 256777766543211
Q ss_pred hhhhchhhHHHhcCCeEEEecccccc
Q 018137 220 KVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 220 ~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
..-..+...|+.+|+.++..+.+.+|
T Consensus 261 t~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 261 TEVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHHHHHHHcCCeEEEcceEccc
Confidence 11246788999999999887666555
No 151
>PRK05588 histidinol-phosphatase; Provisional
Probab=32.33 E-value=3.7e+02 Score=24.04 Aligned_cols=159 Identities=11% Similarity=0.149 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCCC---------hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHH
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYANG---------RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIV 133 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G---------~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~ 133 (360)
....+.+++|.+.|+..+ .+++.... .-+..+ +.+++. +.-+|++.--++ ..++ -.
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~--~~~~I~~GiE~~----------~~~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKY--RNNKLLLGIELG----------MEKD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHH--hcCCcceEEEec----------ccCC-CH
Confidence 356789999999999999 77763110 111222 222221 122343333332 2222 34
Q ss_pred HHHHHHHHhhCCCccceEEecCCCCC----------CCHHHH----HHHHHHHHH-cCceeeec----cC---C------
Q 018137 134 EGTKASLKRLDMDYVDVIYCHRPDTS----------TPIEET----VRAMNYVID-KGWAFYWG----TS---E------ 185 (360)
Q Consensus 134 ~~~~~sL~~Lg~d~iDl~~lH~p~~~----------~~~~~~----~~al~~L~~-~G~ir~iG----vs---~------ 185 (360)
..+++.|++...||+ +.-+|+.+.. .+.++. ++.+.++.+ .|++..+| +. .
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~ 159 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEI 159 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccc
Confidence 556778887787877 7888985321 123333 366666666 46665555 10 0
Q ss_pred ---CCHHHHHHHHHHHhhcCCCCceeecccccc-cccchhhhchhhHHHhcCCeEEEe
Q 018137 186 ---WSAQQITEAWGIAERLDLVGPIVEQPEYNM-LSRHKVEAEYLPLYSNYGIGLTTW 239 (360)
Q Consensus 186 ---~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~-~~~~~~~~~~l~~~~~~gi~vi~~ 239 (360)
.-...++++++.+.+.|. .+.+|--.+.. ....+ ...++..|++.|+.++..
T Consensus 160 ~~~~~~~~~~~il~~~~~~g~-~lEINt~~l~~~~~~~~-~~~~l~~~~~~g~~~i~l 215 (255)
T PRK05588 160 YYDEFKEIIDEILKVLIEKEK-VLEINTRRLDDKRSVEN-LVKIYKRFYELGGKYITL 215 (255)
T ss_pred cHHHHHHHHHHHHHHHHHcCC-EEEEECcccCCCCCCCC-HHHHHHHHHHcCCcEEEE
Confidence 012345666666666552 23333211110 01111 234677788888775443
No 152
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=32.28 E-value=2.2e+02 Score=27.68 Aligned_cols=152 Identities=12% Similarity=0.011 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHH-cCCCeEecccCCCCC--hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHH
Q 018137 61 DVKEAKSLLQCCRD-HGVNFFDNAEVYANG--RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTK 137 (360)
Q Consensus 61 ~~~~~~~~l~~A~~-~Gin~~DTA~~Yg~G--~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 137 (360)
+.++..+.+..+++ .|++.|=.-. |.. ..+.-.=+++++. ++ ++.|..-.. ..++.+...+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~~~di~~v~avRea-~~--~~~l~vDaN--------~~w~~~~A~~--- 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG--GVLPGEEEIEAVKALAEA-FP--GARLRLDPN--------GAWSLETAIR--- 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec--CCCCHHHHHHHHHHHHHh-CC--CCcEEEeCC--------CCcCHHHHHH---
Confidence 45555666666664 5888764321 111 1111122333332 22 333333331 1244444333
Q ss_pred HHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCcee-eeccCCCCHHHHHHHHHHHhhcCCCCceeeccccccc
Q 018137 138 ASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAF-YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNML 216 (360)
Q Consensus 138 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~ 216 (360)
-+++|. - ++.++-.|-+ -++.|.+|++...+. ..|-|.++..++.++++.. -.+++|......
T Consensus 232 -~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~------avdil~~d~~~~ 295 (395)
T cd03323 232 -LAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN------AVDIPLADHHFW 295 (395)
T ss_pred -HHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC------CCcEEeeccccc
Confidence 344553 2 6777777654 257777888776554 5566777777777776642 266777776543
Q ss_pred ccchhhhchhhHHHhcCCeEEEeccccc
Q 018137 217 SRHKVEAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 217 ~~~~~~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
---..-.++..+|+.+|+.++.++....
T Consensus 296 GGit~~~kia~~A~~~gi~~~~h~~~e~ 323 (395)
T cd03323 296 GGMRGSVRVAQVCETWGLGWGMHSNNHL 323 (395)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEecCccc
Confidence 2111124678899999999998876433
No 153
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.05 E-value=3.7e+02 Score=24.04 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=31.9
Q ss_pred chhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCC
Q 018137 224 EYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGV 295 (360)
Q Consensus 224 ~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~ 295 (360)
..+++|+..|...+...|...|.. + . ..+.++...+.++.+.++|+++|+
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~---------~-----~--------~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL---------T-----P--------PNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC---------C-----C--------HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457889999999887776443310 0 0 112234556667888888888876
No 154
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.86 E-value=4.5e+02 Score=24.89 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 018137 62 VKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLK 141 (360)
Q Consensus 62 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 141 (360)
.++..+-+..+++.|++.|=.=-....-..+.-.=+++++. -.+++.|..-.. ...+.+...+-+ +.|+
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~--~g~~~~l~vDaN--------~~~~~~~A~~~~-~~l~ 210 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQA--VGDGVGLMVDYN--------QSLTVPEAIERG-QALD 210 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHh--hCCCCEEEEeCC--------CCcCHHHHHHHH-HHHH
Confidence 35555666666777877543211010011122223344432 123454544431 124555433322 2233
Q ss_pred hhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCce-eeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccch
Q 018137 142 RLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWA-FYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHK 220 (360)
Q Consensus 142 ~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 220 (360)
. +++.++..|-...+ ++.+.+|++.--| -..|=+.++..++.++++.. .++++|+..+-+---.
T Consensus 211 ~-----~~i~~iEeP~~~~d----~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~------~~d~i~~~~~~~GGit 275 (355)
T cd03321 211 Q-----EGLTWIEEPTLQHD----YEGHARIASALRTPVQMGENWLGPEEMFKALSAG------ACDLVMPDLMKIGGVT 275 (355)
T ss_pred c-----CCCCEEECCCCCcC----HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhC------CCCeEecCHhhhCCHH
Confidence 3 35666777654433 5667777776432 24566778888888877642 2667777666432111
Q ss_pred hhhchhhHHHhcCCeEEEe
Q 018137 221 VEAEYLPLYSNYGIGLTTW 239 (360)
Q Consensus 221 ~~~~~l~~~~~~gi~vi~~ 239 (360)
.-.++..+|+.+|+.++.+
T Consensus 276 ~~~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 276 GWLRASALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHHHHHHcCCeeccc
Confidence 1246788999999998644
No 155
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=31.83 E-value=3e+02 Score=23.40 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=61.7
Q ss_pred HcCCCeEeccc--------CCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCC--CCCC--CCCCCHHHHHHHHHHHHH
Q 018137 74 DHGVNFFDNAE--------VYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGG--QGPN--DKGLSRKHIVEGTKASLK 141 (360)
Q Consensus 74 ~~Gin~~DTA~--------~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~--~~~~--~~~~~~~~i~~~~~~sL~ 141 (360)
.++|-++||-. .|- |..+..+-..|++ .|=++.|.++--..+ ++.. .....+..+-+-|++.|+
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~-gr~~P~~~~~i~~---~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~ 153 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYE-GREHPFLQALIAE---YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLE 153 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHc-ccCCchHHHHHhh---cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHH
Confidence 34999999854 343 4446677777776 466777776642111 1111 112356677778888888
Q ss_pred hhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcC
Q 018137 142 RLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKG 176 (360)
Q Consensus 142 ~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G 176 (360)
+-+..| +-|..+++........++.++|..++
T Consensus 154 ~~~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 154 ENNIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred HhCCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 877555 45667766666777888888888776
No 156
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.73 E-value=3.9e+02 Score=25.44 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCCeEeccc---CCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhh
Q 018137 67 SLLQCCRDHGVNFFDNAE---VYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRL 143 (360)
Q Consensus 67 ~~l~~A~~~Gin~~DTA~---~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 143 (360)
...+..-+.||+|+-++- .| .++++..|+.. .-+-+.|---+ +.+.-+ +-+-++++
T Consensus 51 k~~k~~~~~girfV~e~it~~Ny-----k~vL~pll~~~--~gqgf~vnLSv----------d~~s~D----lmr~crk~ 109 (481)
T COG5310 51 KDRKILDERGIRFVQEAITRDNY-----KDVLKPLLKGV--GGQGFCVNLSV----------DTSSLD----LMRLCRKH 109 (481)
T ss_pred HHHHHHHhhhhHHHHHhcChhhH-----HHHHHHHhhcC--CCceEEEEeEe----------ccchhH----HHHHHHHc
Confidence 455556688999998663 45 67888888763 23444443333 133333 44477899
Q ss_pred CCCccceEEecCCCCCCC-----HHHHHHHHHHHHHcCceeeec----cC--CCCHHHH-----HHHHHHHhhcCCCCce
Q 018137 144 DMDYVDVIYCHRPDTSTP-----IEETVRAMNYVIDKGWAFYWG----TS--EWSAQQI-----TEAWGIAERLDLVGPI 207 (360)
Q Consensus 144 g~d~iDl~~lH~p~~~~~-----~~~~~~al~~L~~~G~ir~iG----vs--~~~~~~l-----~~~~~~~~~~~~~~~~ 207 (360)
++=|||-..=-|+....+ ..+.=-+|.+.+.+-+-|..| || .-++..+ +.+++.+...++ ++.
T Consensus 110 ~vLYidTvVEpW~gfyfDa~adn~artnyaLRet~lrEk~r~pgg~TaVs~cGANPGmvswFVKqaLvdlAad~~l-d~~ 188 (481)
T COG5310 110 GVLYIDTVVEPWLGFYFDAQADNAARTNYALRETVLREKRRNPGGPTAVSTCGANPGMVSWFVKQALVDLAADLGL-DFE 188 (481)
T ss_pred CeEEEeeeeccccccchhhhhhhhhhhhHHHHHHHHHHhccCCCCCeeeeecCCCchHHHHHHHHHHHHHHHHhCc-Ccc
Confidence 999999998888755433 223345566666555555554 33 3333333 334455555442 111
Q ss_pred eecccccccccchhhhchhhHHHhcCCeEE
Q 018137 208 VEQPEYNMLSRHKVEAEYLPLYSNYGIGLT 237 (360)
Q Consensus 208 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi 237 (360)
. .. +. ...+...+.++.|+..|
T Consensus 189 e-----p~--~d-dr~gwAkLmkK~GVkgi 210 (481)
T COG5310 189 E-----PA--QD-DREGWAKLMKKAGVKGI 210 (481)
T ss_pred C-----Cc--ch-hhHHHHHHHHHcCCceE
Confidence 1 11 11 12456777888877655
No 157
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=31.64 E-value=57 Score=24.06 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHc-CceeeeccCCCCHHHHHHHHHHHhhcCCCCcee
Q 018137 130 KHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDK-GWAFYWGTSEWSAQQITEAWGIAERLDLVGPIV 208 (360)
Q Consensus 130 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~ 208 (360)
+.+-...+.-.+.||....|+..+..-.+....+.+.+.|..-+++ |+ +-+...|..++..++ +++++
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l~eQv~~mL~~W~~r~G~-------~ATv~~L~~aL~~~~----~~~~~ 78 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKENHPHNVQSQIVEALVKWRQRFGK-------KATVQSLIQSLKAVE----VDPSV 78 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHcC----CCHHH
Confidence 3455567777889999999999887644444445677777777764 43 455667777666654 45555
Q ss_pred ec
Q 018137 209 EQ 210 (360)
Q Consensus 209 ~q 210 (360)
.|
T Consensus 79 ~~ 80 (83)
T cd08319 79 LQ 80 (83)
T ss_pred HH
Confidence 43
No 158
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=31.63 E-value=4.1e+02 Score=26.66 Aligned_cols=78 Identities=13% Similarity=0.192 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCC-CCCCCHHHHHHHHH
Q 018137 92 EEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRP-DTSTPIEETVRAMN 170 (360)
Q Consensus 92 E~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p-~~~~~~~~~~~al~ 170 (360)
-+-+|.+|++ +.+.+|+-.+. ..++.-..+..-+.+.+++-++.-=-+ .|.-- ....+.......+.
T Consensus 341 ~~dlG~~L~~----~~~l~VsINl~-------a~Dl~s~rli~~~~~~l~~~~v~pqQI-~lElTER~f~D~~~~~~iI~ 408 (524)
T COG4943 341 FRDLGDLLRQ----HRDLHVSINLS-------ASDLASPRLIDRLNRKLAQYQVRPQQI-ALELTERTFADPKKMTPIIL 408 (524)
T ss_pred HHHhHHHHHh----CcceEEEEeee-------ehhhcCchHHHHHHHHHHhcCcChHHh-eeehhhhhhcCchhhhHHHH
Confidence 3557888876 34567766663 123444456666666666655421111 01100 01123344567788
Q ss_pred HHHHcCceeee
Q 018137 171 YVIDKGWAFYW 181 (360)
Q Consensus 171 ~L~~~G~ir~i 181 (360)
.+++.|.=-+|
T Consensus 409 r~ReaG~~IyI 419 (524)
T COG4943 409 RLREAGHEIYI 419 (524)
T ss_pred HHHhcCCeEEE
Confidence 88888885554
No 159
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=31.51 E-value=1.6e+02 Score=29.06 Aligned_cols=17 Identities=12% Similarity=-0.036 Sum_probs=11.2
Q ss_pred CCeEEEecccccccccc
Q 018137 233 GIGLTTWSPLASGVLTG 249 (360)
Q Consensus 233 gi~vi~~~pl~~G~L~g 249 (360)
+..+++.++=+.|.+.+
T Consensus 316 ~~~~iglG~gA~s~~~~ 332 (453)
T PRK09249 316 DCDLIGLGVSAISRIGD 332 (453)
T ss_pred CCeEEEECcCcccCCCC
Confidence 34667777777776654
No 160
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=30.98 E-value=3.3e+02 Score=23.10 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCCeEecccC--CCC--ChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHH
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEV--YAN--GRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKA 138 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~--Yg~--G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 138 (360)
+++..++-.++..|-..+=|... |.+ .-+++++|++-++++. =..+-++|-..... ....|++++.+ +.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~-lpaIaLt~dsS~lT--ai~NDy~yd~v---FsR 101 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPS-LPAIALSTDSSVLT--AIANDYGYDEV---FSR 101 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCC-CCeeEeecccHHHh--hhhccccHHHH---HHH
Confidence 45677888899999999866321 111 1258889998887541 22456665543111 11235677766 556
Q ss_pred HHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHH
Q 018137 139 SLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAW 195 (360)
Q Consensus 139 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~ 195 (360)
..+.+|.. =|+++==.+.. .-..++.+++..++.|. .-||++.-+...+..+.
T Consensus 102 qveA~g~~-GDvLigISTSG--NS~nVl~Ai~~Ak~~gm-~vI~ltG~~GG~~~~~~ 154 (176)
T COG0279 102 QVEALGQP-GDVLIGISTSG--NSKNVLKAIEAAKEKGM-TVIALTGKDGGKLAGLL 154 (176)
T ss_pred HHHhcCCC-CCEEEEEeCCC--CCHHHHHHHHHHHHcCC-EEEEEecCCCccccccc
Confidence 66777743 36666544433 23458899999999986 45888777766666654
No 161
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=30.66 E-value=4.8e+02 Score=24.81 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHH
Q 018137 60 LDVKEAKSLLQCCRDHG-VNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKA 138 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~G-in~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 138 (360)
.+.++..+.-+.|-+.| .+|...|..+++|.-=+.+-++++. + +++.=+-+=+..| ..+.+.. +
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~--V-k~~~~le~c~slG-------~l~~eq~-----~ 148 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKA--V-KEELGLEVCASLG-------MLTEEQA-----E 148 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHH--H-HHhcCcHHhhccC-------CCCHHHH-----H
Confidence 56677777778888999 8888888888644444445555553 1 2111111111111 1344433 3
Q ss_pred HHHhhCCCccceEEecCCCC----------CCCHHHHHHHHHHHHHcCceee----eccCCCCHHHHHHHHHHHhhcCCC
Q 018137 139 SLKRLDMDYVDVIYCHRPDT----------STPIEETVRAMNYVIDKGWAFY----WGTSEWSAQQITEAWGIAERLDLV 204 (360)
Q Consensus 139 sL~~Lg~d~iDl~~lH~p~~----------~~~~~~~~~al~~L~~~G~ir~----iGvs~~~~~~l~~~~~~~~~~~~~ 204 (360)
-|+.-|+|+ +-|+.+. ...+++-+++++.+++.|.=.- +|+.+-.-+++.-+..++. .
T Consensus 149 ~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~----l 220 (335)
T COG0502 149 KLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELAN----L 220 (335)
T ss_pred HHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHh----C
Confidence 577778776 4676544 2357899999999999887333 4566666556666666654 2
Q ss_pred Cceeecccccccccch
Q 018137 205 GPIVEQPEYNMLSRHK 220 (360)
Q Consensus 205 ~~~~~q~~~n~~~~~~ 220 (360)
+. .-.++.|.+++.+
T Consensus 221 ~~-pdsVPIn~l~P~~ 235 (335)
T COG0502 221 PT-PDSVPINFLNPIP 235 (335)
T ss_pred CC-CCeeeeeeecCCC
Confidence 21 3455667776654
No 162
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=30.63 E-value=4.3e+02 Score=24.24 Aligned_cols=121 Identities=18% Similarity=0.287 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCCCh------HHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYANGR------AEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHI 132 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~------sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i 132 (360)
.++.++...+++.+.+.|+..|.- .| |. -.+++.. +++.++ .++.|.|-.. . +
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~---tG-GEPll~~~l~~iv~~-l~~~g~--~~v~i~TNG~----------l----l 97 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKI---TG-GEPLLRKDLIEIIRR-IKDYGI--KDVSMTTNGI----------L----L 97 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE---EC-cccccccCHHHHHHH-HHhCCC--ceEEEEcCch----------H----H
Confidence 478889999999999999988763 33 31 1233332 333222 2566666531 1 1
Q ss_pred HHHHHHHHHhhCCCccceEEecCCCC--------CCCHHHHHHHHHHHHHcCce----eeeccCCCCHHHHHHHHHHHhh
Q 018137 133 VEGTKASLKRLDMDYVDVIYCHRPDT--------STPIEETVRAMNYVIDKGWA----FYWGTSEWSAQQITEAWGIAER 200 (360)
Q Consensus 133 ~~~~~~sL~~Lg~d~iDl~~lH~p~~--------~~~~~~~~~al~~L~~~G~i----r~iGvs~~~~~~l~~~~~~~~~ 200 (360)
...-..|.+.|.+.|- +-|+.+++ ...++.++++++.+++.|.. ..+.+...+...+.++++++..
T Consensus 98 -~~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~ 175 (302)
T TIGR02668 98 -EKLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAE 175 (302)
T ss_pred -HHHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 1233346666766543 33455432 12567788888888888742 2333444677777777777766
Q ss_pred cC
Q 018137 201 LD 202 (360)
Q Consensus 201 ~~ 202 (360)
.|
T Consensus 176 ~g 177 (302)
T TIGR02668 176 GG 177 (302)
T ss_pred cC
Confidence 55
No 163
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.26 E-value=4.3e+02 Score=25.82 Aligned_cols=109 Identities=18% Similarity=0.160 Sum_probs=60.3
Q ss_pred cCCCCChHHHHHHHHHHhc--CCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhC-CCccceEEecCCCCCC
Q 018137 84 EVYANGRAEEIMGQAIREL--GWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLD-MDYVDVIYCHRPDTST 160 (360)
Q Consensus 84 ~~Yg~G~sE~~lG~al~~~--~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lH~p~~~~ 160 (360)
-.||. |+.+-++++.. .++.+=++|.|-+.. ..--+++..-+++.-++.- ...+.++.+|.|+...
T Consensus 61 ~VfGg---~~~L~~~i~~~~~~~~p~~I~V~ttc~~--------eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g 129 (417)
T cd01966 61 TILGG---GENLEEALDTLAERAKPKVIGLLSTGLT--------ETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEG 129 (417)
T ss_pred EEECC---HHHHHHHHHHHHHhcCCCEEEEECCCcc--------cccccCHHHHHHHHHhhccccCCCeEEEecCCCCCC
Confidence 36765 55555555532 133445777777632 1333444444444333311 0147899999998765
Q ss_pred CHH----HHHHHHHH-H--------HHcCceeeeccCCCCHHHHHHHHHHHhhcCC
Q 018137 161 PIE----ETVRAMNY-V--------IDKGWAFYWGTSEWSAQQITEAWGIAERLDL 203 (360)
Q Consensus 161 ~~~----~~~~al~~-L--------~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 203 (360)
... .++++|-+ + +..++|.-||-++..+.++.++.+.....|+
T Consensus 130 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl 185 (417)
T cd01966 130 SLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGL 185 (417)
T ss_pred cHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 432 23333321 2 1245688888666667777777777777663
No 164
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=29.97 E-value=5.3e+02 Score=25.12 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=56.8
Q ss_pred CCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHH
Q 018137 86 YANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEET 165 (360)
Q Consensus 86 Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~ 165 (360)
||.|. -+.+++.+++.+. .+++|.|--+ .......+.+.++|+..|.++ ..+.....+-..+.+
T Consensus 6 fG~g~-~~~l~~~l~~~g~--~~vlivt~~~----------~~~~g~~~~v~~~L~~~gi~~---~~f~~v~~~p~~~~v 69 (414)
T cd08190 6 FGPGV-TAEVGMDLKNLGA--RRVCLVTDPN----------LAQLPPVKVVLDSLEAAGINF---EVYDDVRVEPTDESF 69 (414)
T ss_pred ECcCH-HHHHHHHHHHcCC--CeEEEEECcc----------hhhcchHHHHHHHHHHcCCcE---EEeCCCCCCcCHHHH
Confidence 56654 5668899988653 3455554321 122234566777888777553 334444444456667
Q ss_pred HHHHHHHHHcCceeeeccCCCCHHHHHHHHHH
Q 018137 166 VRAMNYVIDKGWAFYWGTSEWSAQQITEAWGI 197 (360)
Q Consensus 166 ~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~ 197 (360)
.++.+.+++.+-=--|||..-+.-+..+++..
T Consensus 70 ~~~~~~~~~~~~D~IIaiGGGSviD~AKaia~ 101 (414)
T cd08190 70 KDAIAFAKKGQFDAFVAVGGGSVIDTAKAANL 101 (414)
T ss_pred HHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 77777777776544467767776666666543
No 165
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=29.89 E-value=5.6e+02 Score=25.37 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCceee----eccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCC
Q 018137 161 PIEETVRAMNYVIDKGWAFY----WGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGI 234 (360)
Q Consensus 161 ~~~~~~~al~~L~~~G~ir~----iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi 234 (360)
..++..++++.+++.|.--. +|+...+.+.+.+.++++.+.+ +.. +.++++.+.+ ...+.+.++++|.
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~---~~~--~~~~~l~P~P-GT~l~~~~~~~g~ 392 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELN---PHT--IQVSLAAPYP-GTELYDQAKQNGW 392 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcC---CCc--eeeeecccCC-CcHHHHHHHHCCC
Confidence 45677888888888887443 3777888888888888887644 332 2345555554 3456666777654
No 166
>PRK09358 adenosine deaminase; Provisional
Probab=29.82 E-value=4.7e+02 Score=24.47 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCC-CHHHHHHHHHHHhhcCCCCc
Q 018137 128 SRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEW-SAQQITEAWGIAERLDLVGP 206 (360)
Q Consensus 128 ~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~~ 206 (360)
+.+...+.+++.++...-+.+--+-++.+....+.+....+++..++.|.-..+=++.. ++..+..+++... +
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg------~ 220 (340)
T PRK09358 147 GEEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELG------A 220 (340)
T ss_pred CHHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcC------C
Confidence 34555555665555422232222234444333455666788888888887666666543 2344555554321 2
Q ss_pred eeecccccccccchhhhchhhHHHhcCCeEEEecccc
Q 018137 207 IVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLA 243 (360)
Q Consensus 207 ~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~ 243 (360)
..+-..+++.+ +.+.++..+++||.+. ..|..
T Consensus 221 ~ri~Hg~~l~~----~~~~~~~l~~~gi~v~-~cP~S 252 (340)
T PRK09358 221 ERIGHGVRAIE----DPALMARLADRRIPLE-VCPTS 252 (340)
T ss_pred cccchhhhhcc----CHHHHHHHHHcCCeEE-ECCCc
Confidence 22222222221 1346888889998864 44543
No 167
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=29.82 E-value=73 Score=24.94 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEecccCCCC
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFDNAEVYAN 88 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~ 88 (360)
.+.+.+.++...+++.|++.||.+..|..
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 45678899999999999999999999954
No 168
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=29.67 E-value=3.9e+02 Score=23.44 Aligned_cols=148 Identities=9% Similarity=0.011 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcC--CCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHH
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELG--WKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTK 137 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~--~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 137 (360)
.+.+++.++++.|++.|+...|+ + ++.+-.++..-| ..+.+++++-=. ++.+.++..+.
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~i---i-----~~~l~p~m~~vG~~w~~gei~vaqe~-----------~as~~~~~~l~ 72 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEI---I-----NGPLMDGMKVVGDLFGAGKMFLPQVL-----------KSARVMKAAVA 72 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH---H-----HHHHHHHHHHHHHHHccCCCcHHHHH-----------HHHHHHHHHHH
Confidence 46789999999999999765542 2 344444444322 223445544322 34444555555
Q ss_pred HHHHhhCCCc-----cceEEecCC-CCCCCHHHHHHHHHHHHHcCc-eeeeccCCCCHHHHHHHHHHHhhcCCCCceeec
Q 018137 138 ASLKRLDMDY-----VDVIYCHRP-DTSTPIEETVRAMNYVIDKGW-AFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQ 210 (360)
Q Consensus 138 ~sL~~Lg~d~-----iDl~~lH~p-~~~~~~~~~~~al~~L~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q 210 (360)
....++.... .=-+++-.+ .+..++...+-+ .-|+..|. |.++|. +.+++.+.++..- .+++++.
T Consensus 73 ~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~-~~l~~~G~~Vi~LG~-~vp~e~~v~~~~~------~~~~~V~ 144 (213)
T cd02069 73 YLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVG-VILSNNGYEVIDLGV-MVPIEKILEAAKE------HKADIIG 144 (213)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHH-HHHHhCCCEEEECCC-CCCHHHHHHHHHH------cCCCEEE
Confidence 5522232211 112223322 222233222111 13566776 677775 4445555554433 3466655
Q ss_pred ccccccccchhhhchhhHHHhcCC
Q 018137 211 PEYNMLSRHKVEAEYLPLYSNYGI 234 (360)
Q Consensus 211 ~~~n~~~~~~~~~~~l~~~~~~gi 234 (360)
+....-.......++++.+++.+.
T Consensus 145 lS~~~~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 145 LSGLLVPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred EccchhccHHHHHHHHHHHHhcCC
Confidence 554433332223456777777754
No 169
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=29.48 E-value=4.2e+02 Score=25.72 Aligned_cols=85 Identities=7% Similarity=-0.069 Sum_probs=55.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHHHHcCcee-eeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchh
Q 018137 148 VDVIYCHRPDTSTPIEETVRAMNYVIDKGWAF-YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYL 226 (360)
Q Consensus 148 iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l 226 (360)
.++.++-.|-+..+ ++.+.+|++.-.+. ..|=|.++...++++++.. -++++|+...-.---.....+.
T Consensus 232 ~~l~~iEeP~~~~d----~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~------a~dii~~d~~~~GGit~~~kia 301 (404)
T PRK15072 232 YRLFWLEDPTPAEN----QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ------LIDYIRTTVTHAGGITHLRRIA 301 (404)
T ss_pred cCCcEEECCCCccC----HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC------CCCEEecCccccCcHHHHHHHH
Confidence 46666776654332 56777888775554 5577788888888887642 2667777665432111124678
Q ss_pred hHHHhcCCeEEEeccc
Q 018137 227 PLYSNYGIGLTTWSPL 242 (360)
Q Consensus 227 ~~~~~~gi~vi~~~pl 242 (360)
.+|+.+|+.++.++..
T Consensus 302 ~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 302 DFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHcCCceeeccCc
Confidence 8999999999886553
No 170
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.42 E-value=3.1e+02 Score=26.19 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=60.5
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHcCc----eeeecc--CCCCHHHHHHHHHHHhhcCCCCceeecccc
Q 018137 151 IYCHRPDTS-----------TPIEETVRAMNYVIDKGW----AFYWGT--SEWSAQQITEAWGIAERLDLVGPIVEQPEY 213 (360)
Q Consensus 151 ~~lH~p~~~-----------~~~~~~~~al~~L~~~G~----ir~iGv--s~~~~~~l~~~~~~~~~~~~~~~~~~q~~~ 213 (360)
+-||.+++. .++++++++++++.+++. |+++=+ -|.+.+++.++.++.+.. +..++-++|
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l---~~~VnLIPy 299 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGI---KCHVNLIPV 299 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC---CCcEEEEec
Confidence 668887653 246889999998876542 334433 366778888888887753 355777788
Q ss_pred cccccchh-------hhchhhHHHhcCCeEEEeccccc
Q 018137 214 NMLSRHKV-------EAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 214 n~~~~~~~-------~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
|++....+ ...+.+.++++|+.+......+.
T Consensus 300 np~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 300 NPVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred CcCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 88653211 12455667889999988776554
No 171
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=29.28 E-value=4.3e+02 Score=23.89 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceE-EecCCCCC-CCHH-H---HHHHHHHHHHc-CceeeeccCCCCHHHHHHHHHHHh
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVI-YCHRPDTS-TPIE-E---TVRAMNYVIDK-GWAFYWGTSEWSAQQITEAWGIAE 199 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~-~lH~p~~~-~~~~-~---~~~al~~L~~~-G~ir~iGvs~~~~~~l~~~~~~~~ 199 (360)
.+++.+.+..++.+ .-|.|+||+= .--+|+.. .+.+ | +...++.+++. +. -+.+-+++++.++++++..
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G- 95 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAG- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcC-
Confidence 56677766665554 5689999993 22234332 1222 2 55566666655 43 2678899999999988762
Q ss_pred hcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEec
Q 018137 200 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWS 240 (360)
Q Consensus 200 ~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~ 240 (360)
. ..+|-+.. .. ..++++.++++|..++.+.
T Consensus 96 ----~-~iINsis~--~~----~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 96 ----A-DIINDVSG--GQ----DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred ----C-CEEEECCC--CC----CchhHHHHHHcCCcEEEEe
Confidence 1 23333322 21 2357889999999999865
No 172
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=29.08 E-value=2.9e+02 Score=28.84 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=34.5
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHHcCCCCcEEeeCCCCHHHHHH-HHhhcc
Q 018137 285 RLKPIADELGV------PLAQLAIAWCASNPNVSSVITGATKESQIQE-NMKAID 332 (360)
Q Consensus 285 ~l~~la~~~~~------s~~q~al~~~l~~~~v~~vi~G~~~~~~l~e-n~~a~~ 332 (360)
+|.++|++.|. ++.++.-.|+-.... ..+..|+|+|+.+-+ .+..+.
T Consensus 223 ~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~-vgitagaStP~~~i~~v~~~l~ 276 (647)
T PRK00087 223 KLYEICKSNCTNTIHIENAGELPEEWFKGVKI-IGVTAGASTPDWIIEEVIKKMS 276 (647)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEeccCCCHHHHHHHHHHHH
Confidence 77788887763 678888899877654 478999999996644 444443
No 173
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.99 E-value=6e+02 Score=25.44 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHcCceee----eccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcC
Q 018137 160 TPIEETVRAMNYVIDKGWAFY----WGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYG 233 (360)
Q Consensus 160 ~~~~~~~~al~~L~~~G~ir~----iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~g 233 (360)
...++..++++.+++.|.... +|+.+.+.+.+++.++.+...+ ++ +..++++.+.+ ...+.+.+++.+
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~---~~--~~~~~~~tP~P-GT~l~~~~~~~~ 391 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWD---PD--QANWLMYTPWP-FTSLFGELSDRV 391 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcC---CC--ceEEEEecCCC-CcHHHHHHHhhc
Confidence 456778899999999997433 4778889999999888887644 33 33446666655 334566666554
No 174
>PRK00077 eno enolase; Provisional
Probab=28.95 E-value=5.6e+02 Score=25.11 Aligned_cols=130 Identities=10% Similarity=0.075 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCC-CCcEEEEeccccC-------CCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHH
Q 018137 93 EIMGQAIRELGWK-RSDIVVSTKIFWG-------GQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 164 (360)
Q Consensus 93 ~~lG~al~~~~~~-R~~v~i~tK~~~~-------~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~ 164 (360)
+.+-++++..++. -+++.|.--+... +.-+ ....+++...+.+.+.++. .++++|-.|-+..+
T Consensus 220 ~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~-~~~~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~D--- 290 (425)
T PRK00077 220 DLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLE-GEGLTSEEMIDYLAELVDK-----YPIVSIEDGLDEND--- 290 (425)
T ss_pred HHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeecc-CCcCCHHHHHHHHHHHHhh-----CCcEEEEcCCCCcc---
Confidence 3455666655543 3567776665210 0000 1124666666655555554 45778888765443
Q ss_pred HHHHHHHHHHcC--ceeeec-c-CCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEE
Q 018137 165 TVRAMNYVIDKG--WAFYWG-T-SEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 165 ~~~al~~L~~~G--~ir~iG-v-s~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~ 238 (360)
|+.+.+|.++- .+.-.| = ...+++.+.++++.. -.+++|+..+-+---....++..+|+.+|+.++.
T Consensus 291 -~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~------a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 291 -WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKG------AANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred -HHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhC------CCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 56666677653 555544 2 234688888877642 2566777666432211235678899999998654
No 175
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=28.74 E-value=2.2e+02 Score=25.19 Aligned_cols=93 Identities=12% Similarity=0.050 Sum_probs=52.1
Q ss_pred CCeEec-ccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecC
Q 018137 77 VNFFDN-AEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHR 155 (360)
Q Consensus 77 in~~DT-A~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~ 155 (360)
.|.++. +..|+- .+++.+.+|.++ -.+++..+-|+.-............+.+.+.+-+.++-|| +.+..+++.-
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~---~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~ 93 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ---TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPILFQF 93 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT---S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE-
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh---CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEEEEEc
Confidence 444443 456763 568899999987 3578999999952221111111235666566666999998 9999999998
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 018137 156 PDTSTPIEETVRAMNYVID 174 (360)
Q Consensus 156 p~~~~~~~~~~~al~~L~~ 174 (360)
|.....-.+.++.|..+.+
T Consensus 94 Ppsf~~~~~~~~~l~~~l~ 112 (230)
T PF01904_consen 94 PPSFRFTPENLERLDAFLD 112 (230)
T ss_dssp -TT--S-HHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHh
Confidence 8764444555555554443
No 176
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=28.73 E-value=4.6e+02 Score=24.07 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHcC-CCeEec---ccC-----CCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHH
Q 018137 61 DVKEAKSLLQCCRDHG-VNFFDN---AEV-----YANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKH 131 (360)
Q Consensus 61 ~~~~~~~~l~~A~~~G-in~~DT---A~~-----Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~ 131 (360)
+.++..+..+.+-+.| +..||- .++ |..+...+.+-+.++... ..-++-|..|+.. +.++
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr-~~~~~pv~vKl~~----------~~~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK-EVVKVPVIVKLTP----------NVTD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH-HhcCCCEEEEcCC----------Cchh
Confidence 5678888888888888 899975 121 122344566666666421 0115678889841 1122
Q ss_pred HHHHHHHHHHhhCCCccceEE-ecCC--CCC-------------C-C--HHHHHHHHHHHHHcCceeeeccCCC-CHHHH
Q 018137 132 IVEGTKASLKRLDMDYVDVIY-CHRP--DTS-------------T-P--IEETVRAMNYVIDKGWAFYWGTSEW-SAQQI 191 (360)
Q Consensus 132 i~~~~~~sL~~Lg~d~iDl~~-lH~p--~~~-------------~-~--~~~~~~al~~L~~~G~ir~iGvs~~-~~~~l 191 (360)
+. .+-+.|+..|.|.|++.- ++.. +.. . + ..-.++.+.++++.=.+--||+... ++++.
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 32 344457788887776531 1111 000 0 0 0113556666666545777887765 67777
Q ss_pred HHHHH
Q 018137 192 TEAWG 196 (360)
Q Consensus 192 ~~~~~ 196 (360)
.+++.
T Consensus 250 ~~~l~ 254 (301)
T PRK07259 250 IEFIM 254 (301)
T ss_pred HHHHH
Confidence 77764
No 177
>PRK14017 galactonate dehydratase; Provisional
Probab=28.72 E-value=4.2e+02 Score=25.44 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=56.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHHHHcCcee-eeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchh
Q 018137 148 VDVIYCHRPDTSTPIEETVRAMNYVIDKGWAF-YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYL 226 (360)
Q Consensus 148 iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l 226 (360)
+++.++-.|-+..+ ++.+.+|.+...+. ..|=|.++...+..+++.. -++++|+..+-+---..-..+.
T Consensus 203 ~~~~~iEeP~~~~d----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~------a~d~v~~d~~~~GGit~~~~ia 272 (382)
T PRK14017 203 YRPMFIEEPVLPEN----AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG------GVDIIQPDLSHAGGITECRKIA 272 (382)
T ss_pred cCCCeEECCCCcCC----HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC------CCCeEecCccccCCHHHHHHHH
Confidence 45666776654333 46678888876555 5567788888888877652 2667777765432111134678
Q ss_pred hHHHhcCCeEEEeccc
Q 018137 227 PLYSNYGIGLTTWSPL 242 (360)
Q Consensus 227 ~~~~~~gi~vi~~~pl 242 (360)
.+|+.+||.++..+..
T Consensus 273 ~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 273 AMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHcCCeEeecCCC
Confidence 9999999999887653
No 178
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=28.67 E-value=3.5e+02 Score=24.98 Aligned_cols=99 Identities=8% Similarity=0.002 Sum_probs=58.5
Q ss_pred HHhhCCCccceEEecCCCCCCCHHHHH-----HHHHHHHHcCceeeeccCCCCHHH----HHHHHHHHhhcCCCCceeec
Q 018137 140 LKRLDMDYVDVIYCHRPDTSTPIEETV-----RAMNYVIDKGWAFYWGTSEWSAQQ----ITEAWGIAERLDLVGPIVEQ 210 (360)
Q Consensus 140 L~~Lg~d~iDl~~lH~p~~~~~~~~~~-----~al~~L~~~G~ir~iGvs~~~~~~----l~~~~~~~~~~~~~~~~~~q 210 (360)
++-++-.++|++.+..+.......+.. +.+.++.++--=|++|+.+.++.. ..++.+...+.| +. +
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~g---f~--g 129 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELG---FV--G 129 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcC---ce--E
Confidence 778888999999998422222222222 456677777777888887776653 334444444433 22 2
Q ss_pred ccccccccc-----hhhhchhhHHHhcCCeEEEecccc
Q 018137 211 PEYNMLSRH-----KVEAEYLPLYSNYGIGLTTWSPLA 243 (360)
Q Consensus 211 ~~~n~~~~~-----~~~~~~l~~~~~~gi~vi~~~pl~ 243 (360)
+..++..+. ..-..+.+.|+++|+.|+-+....
T Consensus 130 ~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 130 VKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred EEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 333222221 111457899999999998865443
No 179
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=28.65 E-value=3.6e+02 Score=25.02 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhh---CCCccceE------EecCCCCCCCHHHHHHHHHHHHHcCceeee----ccCCCCHHHHHH
Q 018137 127 LSRKHIVEGTKASLKRL---DMDYVDVI------YCHRPDTSTPIEETVRAMNYVIDKGWAFYW----GTSEWSAQQITE 193 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~L---g~d~iDl~------~lH~p~~~~~~~~~~~al~~L~~~G~ir~i----Gvs~~~~~~l~~ 193 (360)
.+++.+.......++.+ ||-|+|+. .-|..+...-.+.+.+++++.+++--|+.. +..+.+++.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Q ss_pred HHHHHhh---cCCCCceeecccccccccchhhhchhhHHHhcCCeEEEe
Q 018137 194 AWGIAER---LDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTW 239 (360)
Q Consensus 194 ~~~~~~~---~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~ 239 (360)
.++.+.. .+++.+++.-.+... .... -..++..++++|+.+...
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~-~~~~-~~~~~~~A~~~g~~v~~H 192 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGF-PPEK-FVRAFQRAREAGLRLTAH 192 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCC-CHHH-HHHHHHHHHHCCCceEEe
No 180
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.44 E-value=5.6e+02 Score=24.96 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=46.2
Q ss_pred CCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHH-HHHHHHHHH-----------
Q 018137 106 RSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEE-TVRAMNYVI----------- 173 (360)
Q Consensus 106 R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~-~~~al~~L~----------- 173 (360)
.+-++|.|-+.. ..--+++..-+++.-++++ +.++.+|.|........ ...+++.+.
T Consensus 86 p~~I~v~~tC~~--------~iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~g~~~al~~l~~~~~~~~~~~~ 154 (430)
T cd01981 86 PDLIVLTPTCTS--------SILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVNELQAADETFEQLVRFYAEKARPQG 154 (430)
T ss_pred CCEEEEeCCccH--------HHHhhCHHHHHHHhhhccC---CCeEEecCCCccchHHHHHHHHHHHHHHHHhccccccc
Confidence 334666666521 1333444444444333433 67999999987655222 223333332
Q ss_pred ------HcCceeeeccCCCC---HHHHHHHHHHHhhcC
Q 018137 174 ------DKGWAFYWGTSEWS---AQQITEAWGIAERLD 202 (360)
Q Consensus 174 ------~~G~ir~iGvs~~~---~~~l~~~~~~~~~~~ 202 (360)
.+..|.-||.++.+ +.++.++.+.....|
T Consensus 155 ~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~G 192 (430)
T cd01981 155 TPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLG 192 (430)
T ss_pred cccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcC
Confidence 12458888877543 556666666666655
No 181
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=28.22 E-value=84 Score=24.00 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccc
Q 018137 184 SEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 184 s~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
+.++..+++++++.. ..+++|+...-+---..-..+..+|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~------a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAG------AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTT------SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcC------CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 456677777776631 2566666644321111124678899999999999886 544
No 182
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=28.21 E-value=3.2e+02 Score=26.84 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=6.0
Q ss_pred HHHHHHHHHHh
Q 018137 91 AEEIMGQAIRE 101 (360)
Q Consensus 91 sE~~lG~al~~ 101 (360)
+-+.+.+.+..
T Consensus 90 aR~~VAklInA 100 (428)
T KOG1549|consen 90 AREQVAKLINA 100 (428)
T ss_pred HHHHHHHHhCC
Confidence 34556666654
No 183
>smart00642 Aamy Alpha-amylase domain.
Probab=28.14 E-value=90 Score=26.21 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=15.1
Q ss_pred hchhhHHHhcCCeEEEecccc
Q 018137 223 AEYLPLYSNYGIGLTTWSPLA 243 (360)
Q Consensus 223 ~~~l~~~~~~gi~vi~~~pl~ 243 (360)
..+++.|+++||.|+.=-++.
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 73 KELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 467888888888887654443
No 184
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=28.14 E-value=5.2e+02 Score=24.46 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred cCccccccc-------cccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEecccc
Q 018137 45 VSQLSYGAW-------VSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFW 117 (360)
Q Consensus 45 vs~lglG~~-------~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~ 117 (360)
|.+|.+|.- ...|...+.+++.+.++.+.+.|+..+..-=.||- |.
T Consensus 109 vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~Gl----------------Pg----------- 161 (350)
T PRK08446 109 VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDT----------------PL----------- 161 (350)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC----------------CC-----------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCC----------CCCHHHHHHHHHHHHHcCceeeeccCCC
Q 018137 118 GGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDT----------STPIEETVRAMNYVIDKGWAFYWGTSEW 186 (360)
Q Consensus 118 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~----------~~~~~~~~~al~~L~~~G~ir~iGvs~~ 186 (360)
.+.+.+++.++..++ |+.++|.+|.|.--.. ....+-...+.+.|.+.|. ..+++|||
T Consensus 162 ---------qt~~~~~~~l~~~~~-l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~f 229 (350)
T PRK08446 162 ---------DNKKLLKEELKLAKE-LPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNF 229 (350)
T ss_pred ---------CCHHHHHHHHHHHHh-cCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehh
No 185
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=28.07 E-value=4.9e+02 Score=25.23 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=58.2
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHH
Q 018137 85 VYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 164 (360)
Q Consensus 85 ~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~ 164 (360)
.||.|. -+.+|+.+++.+. ..++|.|--+ .....+.+.+.++|+.-|.++ ..+....++-..+.
T Consensus 31 ~fG~g~-~~~l~~~~~~~g~--~~~lvv~~~~----------~~~~g~~~~v~~~L~~~gi~~---~~~~~v~~~P~~~~ 94 (395)
T PRK15454 31 LCGPGA-VSSCGQQAQTRGL--KHLFVMADSF----------LHQAGMTAGLTRSLAVKGIAM---TLWPCPVGEPCITD 94 (395)
T ss_pred EECcCH-HHHHHHHHHhcCC--CEEEEEcCcc----------hhhCccHHHHHHHHHHcCCeE---EEECCCCCCcCHHH
Confidence 356654 4557888887652 3566655321 122234556888898888654 23334444444555
Q ss_pred HHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHH
Q 018137 165 TVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIA 198 (360)
Q Consensus 165 ~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~ 198 (360)
+.++.+.+++.+-=.-|||..-+.-+..+++...
T Consensus 95 v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~ 128 (395)
T PRK15454 95 VCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALL 128 (395)
T ss_pred HHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHH
Confidence 6666666666655555677777777777666554
No 186
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=27.76 E-value=3.6e+02 Score=22.46 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCC-cEEEEeccccCCCCCCCCCCCHHHHHHHHHHH
Q 018137 61 DVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRS-DIVVSTKIFWGGQGPNDKGLSRKHIVEGTKAS 139 (360)
Q Consensus 61 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~-~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~s 139 (360)
+.+...++++.+.+.|++-+-+.. .++-.+.+. .++ ++-|..+++.+. .....+...+.++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~---~~~~~~~v~~~v~~~~-----~~~~~~~~~~~a~~a 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA---LAGSDVPVIVVVGFPT-----GLTTTEVKVAEVEEA 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH---hCCCCCeEEEEecCCC-----CCCcHHHHHHHHHHH
Confidence 678899999999999999876543 444444443 234 577777775311 001134444444444
Q ss_pred HHhhCCCccce
Q 018137 140 LKRLDMDYVDV 150 (360)
Q Consensus 140 L~~Lg~d~iDl 150 (360)
.++|.|.+.+
T Consensus 75 -~~~Gad~i~v 84 (201)
T cd00945 75 -IDLGADEIDV 84 (201)
T ss_pred -HHcCCCEEEE
Confidence 4557555444
No 187
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=27.72 E-value=3.7e+02 Score=26.52 Aligned_cols=61 Identities=15% Similarity=0.342 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEe-cCCCC----------CC-CHHH---HH-HHHHHHHHcCceeeeccCCCCHH
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYC-HRPDT----------ST-PIEE---TV-RAMNYVIDKGWAFYWGTSEWSAQ 189 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-H~p~~----------~~-~~~~---~~-~al~~L~~~G~ir~iGvs~~~~~ 189 (360)
.+.+.+.+.++..++ |+.++|.+|.+ +.|.. .. +.++ .+ .+.+.|.+.|. ..+++++|.-.
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~~ 291 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAKP 291 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeCC
Confidence 577777777775544 88888888877 22210 01 1122 22 34455566676 45888888743
No 188
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=27.64 E-value=5e+02 Score=24.09 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=51.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHHHHcC-ceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchh
Q 018137 148 VDVIYCHRPDTSTPIEETVRAMNYVIDKG-WAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYL 226 (360)
Q Consensus 148 iDl~~lH~p~~~~~~~~~~~al~~L~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l 226 (360)
.++.++-.|-+.. +.+..|.+.- .--..|=|-++..++.++++.. -.+++|+.....---..-..+.
T Consensus 183 ~~i~~iEqP~~~~------~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~------~~d~i~ik~~~~GGi~~~~~i~ 250 (307)
T TIGR01927 183 GRIAFLEEPLPDA------DEMSAFSEATGTAIALDESLWELPQLADEYGPG------WRGALVIKPAIIGSPAKLRDLA 250 (307)
T ss_pred CCceEEeCCCCCH------HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcC------CCceEEECchhcCCHHHHHHHH
Confidence 4666676665321 4555665553 2334556677777777766431 1445555554322111124678
Q ss_pred hHHHhcCCeEEEeccccccc
Q 018137 227 PLYSNYGIGLTTWSPLASGV 246 (360)
Q Consensus 227 ~~~~~~gi~vi~~~pl~~G~ 246 (360)
..|+.+|+.++..+.+.+|+
T Consensus 251 ~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 251 QKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHcCCCEEEECccchHH
Confidence 89999999999887776653
No 189
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=27.47 E-value=2.8e+02 Score=28.70 Aligned_cols=77 Identities=13% Similarity=-0.013 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccC-CCCHHHHHHHHHHHhhcCCCC
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTS-EWSAQQITEAWGIAERLDLVG 205 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~~ 205 (360)
.+.++++.+ ..+|.|+|=+++..........+.+...+.+......++.+||. |-+++.+.++.+. ..
T Consensus 11 t~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~------~~ 79 (610)
T PRK13803 11 KDSALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK------NG 79 (610)
T ss_pred CcHHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh------cC
Confidence 344555443 45899999998666544455555513333332222347789975 8888877777654 45
Q ss_pred ceeeccccc
Q 018137 206 PIVEQPEYN 214 (360)
Q Consensus 206 ~~~~q~~~n 214 (360)
++++|++-+
T Consensus 80 ld~vQLHG~ 88 (610)
T PRK13803 80 IDFVQLHGA 88 (610)
T ss_pred CCEEEECCC
Confidence 889999764
No 190
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=27.29 E-value=4e+02 Score=26.45 Aligned_cols=108 Identities=18% Similarity=0.164 Sum_probs=56.4
Q ss_pred cCCCCChHHHHHHHHHHhc--CCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhC-CCccceEEecCCCCCC
Q 018137 84 EVYANGRAEEIMGQAIREL--GWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLD-MDYVDVIYCHRPDTST 160 (360)
Q Consensus 84 ~~Yg~G~sE~~lG~al~~~--~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lH~p~~~~ 160 (360)
-+||. |+.|-+++++. .++.+=++|.|-+-. ..--+++..-+++.-++.. ...+.++.++.|+...
T Consensus 72 ~VfGg---~~~L~~aI~~~~~~~~P~~I~V~ttC~~--------eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g 140 (455)
T PRK14476 72 TILGG---DENVEEAILNICKKAKPKIIGLCTTGLT--------ETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKG 140 (455)
T ss_pred eEeCC---HHHHHHHHHHHHHhhCCCEEEEeCcchH--------hhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCC
Confidence 47775 66666666642 123344666666521 1222333333333322221 1136899999998765
Q ss_pred CHH----HHHHHHHH-HH--------HcCceeeeccCCCCHHHHHHHHHHHhhcC
Q 018137 161 PIE----ETVRAMNY-VI--------DKGWAFYWGTSEWSAQQITEAWGIAERLD 202 (360)
Q Consensus 161 ~~~----~~~~al~~-L~--------~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 202 (360)
... .++.++-+ +. ++++|.-||-+++.+..+.++.+.....|
T Consensus 141 ~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~G 195 (455)
T PRK14476 141 ALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFG 195 (455)
T ss_pred cHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcC
Confidence 432 23333322 22 24568888766555566666666666655
No 191
>PLN00191 enolase
Probab=27.24 E-value=5.1e+02 Score=25.82 Aligned_cols=133 Identities=11% Similarity=0.053 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEeccccCC----CCCC-----------CCCCCHHHHHHHHHHHHHhhCCCccceEEecC
Q 018137 91 AEEIMGQAIRELGWKRSDIVVSTKIFWGG----QGPN-----------DKGLSRKHIVEGTKASLKRLDMDYVDVIYCHR 155 (360)
Q Consensus 91 sE~~lG~al~~~~~~R~~v~i~tK~~~~~----~~~~-----------~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~ 155 (360)
+-+++-+++...++. .++.|+--+.... .+.. ....+++.+.+-+...++ ..++.+|-.
T Consensus 245 al~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~-----~y~I~~IED 318 (457)
T PLN00191 245 GLELLKEAIEKAGYT-GKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVS-----DYPIVSIED 318 (457)
T ss_pred HHHHHHHHHHHcCCC-CceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhh-----cCCcEEEEC
Confidence 346777888877765 5577665552110 0000 011356555554444433 346778887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCceeeec--cCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcC
Q 018137 156 PDTSTPIEETVRAMNYVIDKGWAFYWG--TSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYG 233 (360)
Q Consensus 156 p~~~~~~~~~~~al~~L~~~G~ir~iG--vs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~g 233 (360)
|-... -|+.+.+|.+...+.-+| ....++..+.++++.- -..++++..|-+---....++..+|+.+|
T Consensus 319 Pl~~~----D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~------aad~i~iKl~qiGGITea~~~a~lA~~~G 388 (457)
T PLN00191 319 PFDQD----DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEK------ACNALLLKVNQIGTVTESIEAVKMSKAAG 388 (457)
T ss_pred CCCcc----cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhC------CCCEEEecccccCCHHHHHHHHHHHHHCC
Confidence 76543 367777888888887777 2346688888877652 25566666653322112356789999999
Q ss_pred CeEEEe
Q 018137 234 IGLTTW 239 (360)
Q Consensus 234 i~vi~~ 239 (360)
+.++.-
T Consensus 389 ~~~~is 394 (457)
T PLN00191 389 WGVMTS 394 (457)
T ss_pred CEEEeC
Confidence 998764
No 192
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.22 E-value=7.3e+02 Score=26.12 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecc--cCCCCChHHHHHHHHHHhcCCCCCcEEEEe--ccccCCCCCC-------CCCC
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNA--EVYANGRAEEIMGQAIRELGWKRSDIVVST--KIFWGGQGPN-------DKGL 127 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA--~~Yg~G~sE~~lG~al~~~~~~R~~v~i~t--K~~~~~~~~~-------~~~~ 127 (360)
++|.++..+.+....+.|+.-|=-+ .+|-|...|..+++.+++.. .++.|++ +++.-..... ....
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~---~~i~V~~shev~p~~~~~eR~~TavlnA~L 211 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG---PDIPVSLSHEVSPEIGEYERANTAVLNAYL 211 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc---CCceEEechhcchhcCcccchhhheeeeee
Confidence 6899999999999999999966544 57888999999999999854 4566666 7742111000 0001
Q ss_pred --CHHHHHHHHHHHHHhhCCCccceEEecCCCCCCC
Q 018137 128 --SRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTP 161 (360)
Q Consensus 128 --~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~ 161 (360)
--+...+++++.|+.-|.+ .+++++-+.....+
T Consensus 212 ~pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~ 246 (674)
T COG0145 212 SPILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVS 246 (674)
T ss_pred hHHHHHHHHHHHHHHHhcCCC-ceeEEEecCCcccc
Confidence 1144556677777777755 57888877654443
No 193
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.12 E-value=5.5e+02 Score=24.42 Aligned_cols=168 Identities=18% Similarity=0.201 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHH---cCCCeEecccCCCCChH---HHHHHHHHHhc----CCCCCcEEEEeccccCCCCCCCCCCC
Q 018137 59 QLDVKEAKSLLQCCRD---HGVNFFDNAEVYANGRA---EEIMGQAIREL----GWKRSDIVVSTKIFWGGQGPNDKGLS 128 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~---~Gin~~DTA~~Yg~G~s---E~~lG~al~~~----~~~R~~v~i~tK~~~~~~~~~~~~~~ 128 (360)
+++.++..+-+..+.+ .+++.+ -..|.|+. -+.+-++++.. ++....+.|+| +|.
T Consensus 128 nlt~~EIv~qv~~~~~~~~~~~~~I---vfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST-~G~----------- 192 (345)
T PRK14457 128 SLKAHEIVDQVLTVQEDMQRRVSHV---VFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVST-VGV----------- 192 (345)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCCEE---EEEecCccccCHHHHHHHHHHHhcccCCccCceEEEC-CCc-----------
Confidence 4666666655555432 223222 23344521 24444555532 33333566666 321
Q ss_pred HHHHHHHHHHHHHhhC-CCccceEEecCCCCC-----------CCHHHHHHHHHH-HHHcCc---eeeeccC--CCCHHH
Q 018137 129 RKHIVEGTKASLKRLD-MDYVDVIYCHRPDTS-----------TPIEETVRAMNY-VIDKGW---AFYWGTS--EWSAQQ 190 (360)
Q Consensus 129 ~~~i~~~~~~sL~~Lg-~d~iDl~~lH~p~~~-----------~~~~~~~~al~~-L~~~G~---ir~iGvs--~~~~~~ 190 (360)
.+.+++-.+.-+++|+ .+....+-||.+++. .+++++++++.+ +.+.|+ |+++=|. |.+.+.
T Consensus 193 ~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~ 272 (345)
T PRK14457 193 PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEH 272 (345)
T ss_pred hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHH
Confidence 1223333333334443 234577899998653 246777777755 455563 4454443 677788
Q ss_pred HHHHHHHHhhcCCCCceeecccccccccchh----h---hchhhHHHhcCCeEEEeccccc
Q 018137 191 ITEAWGIAERLDLVGPIVEQPEYNMLSRHKV----E---AEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~----~---~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
++++.++++.. +..++-++||++....+ . ..+.+.++++|+.+......+.
T Consensus 273 a~~La~~l~~l---~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 273 AEELANLLRGF---QSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHHHHhcC---CCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 88888887753 35677889988743221 1 2345667788999887766554
No 194
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=26.88 E-value=5.6e+02 Score=24.39 Aligned_cols=97 Identities=14% Similarity=0.061 Sum_probs=58.0
Q ss_pred CCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHH
Q 018137 86 YANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEET 165 (360)
Q Consensus 86 Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~ 165 (360)
||.| +-..+++.+++.+. ++++|.|--+ .......+.+.++|+.-|.++ ..+......-..+.+
T Consensus 7 ~G~g-~~~~l~~~l~~~g~--~~~liv~~~~----------~~~~~~~~~v~~~L~~~g~~~---~~~~~v~~~p~~~~v 70 (370)
T cd08192 7 FGAG-AIKELPAECAELGI--KRPLIVTDPG----------LAALGLVARVLALLEDAGLAA---ALFDEVPPNPTEAAV 70 (370)
T ss_pred ECcC-HHHHHHHHHHHcCC--CeEEEEcCcc----------hhhCccHHHHHHHHHHcCCeE---EEeCCCCCCCCHHHH
Confidence 5554 34558888887542 3566654311 111124456778888777543 334444445556677
Q ss_pred HHHHHHHHHcCceeeeccCCCCHHHHHHHHHHH
Q 018137 166 VRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIA 198 (360)
Q Consensus 166 ~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~ 198 (360)
.++++.+++.+-=--|||..-+.-++.+++...
T Consensus 71 ~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~ 103 (370)
T cd08192 71 EAGLAAYRAGGCDGVIAFGGGSALDLAKAVALM 103 (370)
T ss_pred HHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 788887777765455677777777777766554
No 195
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.68 E-value=6.2e+02 Score=24.82 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=54.7
Q ss_pred cccCCCCChHHHHHHHHHHhc--CCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCC-CccceEEecCCCC
Q 018137 82 NAEVYANGRAEEIMGQAIREL--GWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDM-DYVDVIYCHRPDT 158 (360)
Q Consensus 82 TA~~Yg~G~sE~~lG~al~~~--~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~-d~iDl~~lH~p~~ 158 (360)
..-+||. |+.|-+++++. ..+.+=++|.|-+.. ..--+++..-+++.-++... ..+.++.++.|..
T Consensus 63 ~d~V~Gg---~~~L~~ai~~~~~~~~p~~I~v~ttC~~--------~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 131 (435)
T cd01974 63 DAAVFGG---QNNLIDGLKNAYAVYKPDMIAVSTTCMA--------EVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSF 131 (435)
T ss_pred CceEECc---HHHHHHHHHHHHHhcCCCEEEEeCCchH--------hhhhccHHHHHHHHHHhccCCCCCeEEEecCCCC
Confidence 3357774 67777777632 123444677776621 13334444444443333311 1478999998877
Q ss_pred CCCH----HHHHHHHHH-HH-------HcCceeeeccCCCCHHHHHHHHHHHhhcC
Q 018137 159 STPI----EETVRAMNY-VI-------DKGWAFYWGTSEWSAQQITEAWGIAERLD 202 (360)
Q Consensus 159 ~~~~----~~~~~al~~-L~-------~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 202 (360)
.... +.++++|-+ +. +.+.|.-||-.+.....+.++.+.....|
T Consensus 132 ~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~G 187 (435)
T cd01974 132 VGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMG 187 (435)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcC
Confidence 6543 233334432 22 23446667632222222455555555555
No 196
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=26.68 E-value=1.9e+02 Score=26.77 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhcccC------C--CCCHHHHHHHHHHHccC
Q 018137 285 RLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVI------P--LLTPSVMDKIEAAVLSK 352 (360)
Q Consensus 285 ~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~~------~--~L~~~e~~~l~~~~~~~ 352 (360)
+.+++++++++...---+.=++..+.|+.|++.+.+..|.+-.++|+..+ + .+|.+|.++|-++.+..
T Consensus 42 ~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 42 RAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 67888999998722223566778888999999999999999999988754 2 45678888887777654
No 197
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=26.62 E-value=5.7e+02 Score=24.38 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHc---CCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHH
Q 018137 59 QLDVKEAKSLLQCCRDH---GVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEG 135 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~---Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~ 135 (360)
..+.++..+++....+. =+-.+|..+..+.- -..+-+.+. ...-++|.+|+-.- ......+.+...
T Consensus 47 ~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~--~~~l~~~~~----~~piilV~NK~DLl-----~k~~~~~~~~~~ 115 (360)
T TIGR03597 47 ELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL--IPELKRFVG----GNPVLLVGNKIDLL-----PKSVNLSKIKEW 115 (360)
T ss_pred CCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc--cHHHHHHhC----CCCEEEEEEchhhC-----CCCCCHHHHHHH
Confidence 35667777776665432 23356755444221 122223332 34568899998321 122345666666
Q ss_pred HHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHH
Q 018137 136 TKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAW 195 (360)
Q Consensus 136 ~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~ 195 (360)
+.+.++.+|....|++.+- .-....++++++.+.++.+.+.+-.+|.+|..-..+...+
T Consensus 116 l~~~~k~~g~~~~~i~~vS-Ak~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l 174 (360)
T TIGR03597 116 MKKRAKELGLKPVDIILVS-AKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKL 174 (360)
T ss_pred HHHHHHHcCCCcCcEEEec-CCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHH
Confidence 6666777776544666554 3444568888888888877678889999999977665544
No 198
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=26.57 E-value=5.3e+02 Score=24.04 Aligned_cols=150 Identities=11% Similarity=0.104 Sum_probs=77.4
Q ss_pred ceeecCCCCcccCc-ccccccccc---CCCC--CHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCC
Q 018137 34 QYKHLGRSGLRVSQ-LSYGAWVSF---GNQL--DVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRS 107 (360)
Q Consensus 34 ~~r~lg~tg~~vs~-lglG~~~~~---~~~~--~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~ 107 (360)
.-...++||.+-|+ -.+|.+..+ |... ......++...|..+|+.|+-++..+..-+..+.+.++++. +.
T Consensus 127 DNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~----~G 202 (299)
T PRK11865 127 DNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV----EG 202 (299)
T ss_pred CCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC----CC
Confidence 33455677777765 234444211 1100 01223455666778899999998887544556667777653 23
Q ss_pred cEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC---CCHH----HHHHHHHHHHHcCceee
Q 018137 108 DIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS---TPIE----ETVRAMNYVIDKGWAFY 180 (360)
Q Consensus 108 ~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~---~~~~----~~~~al~~L~~~G~ir~ 180 (360)
--||..+.... ...++.++. .++.......+.|.=||=...-... .+.. --...=+.|+.+|+.++
T Consensus 203 ps~I~v~sPC~----~~~~~~~~~---~~~~~klAvetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~ 275 (299)
T PRK11865 203 PAYIQVLQPCP----TGWGFPPEK---TIEIGRLAVETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKH 275 (299)
T ss_pred CEEEEEECCCC----CCCCCCHHH---HHHHHHHHHhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhc
Confidence 34566665321 122334433 3333333444666666655431110 0000 01122345788999888
Q ss_pred eccCCCCHHHHHHHHHHHh
Q 018137 181 WGTSEWSAQQITEAWGIAE 199 (360)
Q Consensus 181 iGvs~~~~~~l~~~~~~~~ 199 (360)
+ ++++++++.+..+
T Consensus 276 L-----~~~~~~~~q~~v~ 289 (299)
T PRK11865 276 L-----TEEDIEILQKYID 289 (299)
T ss_pred C-----CHHHHHHHHHHHH
Confidence 8 5666666655543
No 199
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=26.53 E-value=2.8e+02 Score=30.17 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHhhC--------------------------CCccceEEecCCCCCCCH---HHHHHHHHHHHHcC
Q 018137 126 GLSRKHIVEGTKASLKRLD--------------------------MDYVDVIYCHRPDTSTPI---EETVRAMNYVIDKG 176 (360)
Q Consensus 126 ~~~~~~i~~~~~~sL~~Lg--------------------------~d~iDl~~lH~p~~~~~~---~~~~~al~~L~~~G 176 (360)
+..+.++.+.++..|+.++ +..-.+++|..|....+. ..+|+...++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4667788889999999876 346788899988765553 46899999999999
Q ss_pred ceeeeccCCCCHHHHHHHHHH
Q 018137 177 WAFYWGTSEWSAQQITEAWGI 197 (360)
Q Consensus 177 ~ir~iGvs~~~~~~l~~~~~~ 197 (360)
+ ++=+.+|+.+..+.++..
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 8 888899998876665543
No 200
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=26.48 E-value=5.4e+02 Score=24.08 Aligned_cols=111 Identities=8% Similarity=-0.073 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEecCCCCCC-CHHHHHHHHHHHHHcCceeeeccCC----CCHHH-HHHHHHHHhhc
Q 018137 128 SRKHIVEGTKASLKRLDMDYVDVIYCHRPDTST-PIEETVRAMNYVIDKGWAFYWGTSE----WSAQQ-ITEAWGIAERL 201 (360)
Q Consensus 128 ~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~al~~L~~~G~ir~iGvs~----~~~~~-l~~~~~~~~~~ 201 (360)
+.+.+.+.++..-+..+ |.-+.|-.-|+.. +...+.+.++.+++.|.++.+.+.+ .++.. -.++++.....
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 44555554443322222 4445555544443 2356778888888888776444432 12222 12333333443
Q ss_pred CCCCceeecccccccccc---hhhhchhhHHHhcCCeEEEecccccc
Q 018137 202 DLVGPIVEQPEYNMLSRH---KVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 202 ~~~~~~~~q~~~n~~~~~---~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
|. ...+.++.| +.. ..-...+..+++.||.+...+++..|
T Consensus 197 g~--~v~i~l~~~--h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~g 239 (321)
T TIGR03822 197 GK--TVYVALHAN--HARELTAEARAACARLIDAGIPMVSQSVLLRG 239 (321)
T ss_pred CC--cEEEEecCC--ChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCC
Confidence 42 223333333 111 11234577888999999999998877
No 201
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=26.32 E-value=3.8e+02 Score=24.34 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEecCC
Q 018137 126 GLSRKHIVEGTKASLKRLDMDYVDVIYCHRP 156 (360)
Q Consensus 126 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p 156 (360)
.++.+... .+-+.|.++|+|+|++-+....
T Consensus 16 ~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~~ 45 (266)
T cd07944 16 DFGDEFVK-AIYRALAAAGIDYVEIGYRSSP 45 (266)
T ss_pred cCCHHHHH-HHHHHHHHCCCCEEEeecCCCC
Confidence 36666554 4666799999999999876543
No 202
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=26.31 E-value=5.5e+02 Score=24.13 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHh
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKR 142 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 142 (360)
...+++++.+-+.|| .+|.|..- ++..=+++.- -+..+|+|....-. -.+..+.--.++++...++
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~s-----~kt~~Dvl~~----s~~PviaSHSN~~a----l~~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHLS-----DKTFWDVLDL----SKAPVVASHSNARA----LVDHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEecccC-----CccHHHHHhc----cCCceEEecCCchh----ccCCCCCCCHHHHHHHHhc
Confidence 578899999999999 89988764 5666677763 34557777653110 0111121222334444444
Q ss_pred hCCCccceEEecC---C--CCCCCHHHHHHHHHHHHHcCceeeeccC
Q 018137 143 LDMDYVDVIYCHR---P--DTSTPIEETVRAMNYVIDKGWAFYWGTS 184 (360)
Q Consensus 143 Lg~d~iDl~~lH~---p--~~~~~~~~~~~al~~L~~~G~ir~iGvs 184 (360)
=|+ |.+-++-. + ....++++.++.++.+++.+=++++|+.
T Consensus 215 gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglG 259 (313)
T COG2355 215 GGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLG 259 (313)
T ss_pred CCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEec
Confidence 442 33333321 1 2355789999999999999889999986
No 203
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.16 E-value=4.5e+02 Score=23.08 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=17.5
Q ss_pred cEEeeCCCCHHHHHHHHhhccc
Q 018137 312 SSVITGATKESQIQENMKAIDV 333 (360)
Q Consensus 312 ~~vi~G~~~~~~l~en~~a~~~ 333 (360)
.+|=.|.++++|+++.-...+.
T Consensus 210 lAVGFGvst~EHf~qVgsvaDG 231 (268)
T KOG4175|consen 210 LAVGFGVSTPEHFKQVGSVADG 231 (268)
T ss_pred eeEeeccCCHHHHHhhhhhccc
Confidence 3577799999999998777654
No 204
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=26.08 E-value=3.4e+02 Score=24.49 Aligned_cols=104 Identities=7% Similarity=-0.028 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCC-----CCCHHHHHHHHHHHHHc-CceeeeccC---CCCHHHHHHHHHH
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDT-----STPIEETVRAMNYVIDK-GWAFYWGTS---EWSAQQITEAWGI 197 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~-----~~~~~~~~~al~~L~~~-G~ir~iGvs---~~~~~~l~~~~~~ 197 (360)
++.+... .+-+.|.++|+++|.+-+...... ......-++.++.+++. +..+...++ ..+...++.+.+
T Consensus 19 ~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~- 96 (263)
T cd07943 19 FTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD- 96 (263)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH-
Confidence 5555554 455669999999999975532110 01112235556666443 335554443 223444444433
Q ss_pred HhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEe
Q 018137 198 AERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTW 239 (360)
Q Consensus 198 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~ 239 (360)
.| ++.+.+-.+.-+-.. -.+.+++++++|+.+...
T Consensus 97 ---~g---~~~iri~~~~s~~~~-~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 ---LG---VDVVRVATHCTEADV-SEQHIGAARKLGMDVVGF 131 (263)
T ss_pred ---cC---CCEEEEEechhhHHH-HHHHHHHHHHCCCeEEEE
Confidence 22 233332222111111 245677888888766543
No 205
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=25.84 E-value=6.3e+02 Score=24.63 Aligned_cols=131 Identities=13% Similarity=0.154 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCC-CCcEEEEeccccCC---CCC------CCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCH
Q 018137 93 EIMGQAIRELGWK-RSDIVVSTKIFWGG---QGP------NDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPI 162 (360)
Q Consensus 93 ~~lG~al~~~~~~-R~~v~i~tK~~~~~---~~~------~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~ 162 (360)
+.+-+++++.++. -+++.|.--+.... ... ....++++...+-+.+.++. .+++++-.|-+..+
T Consensus 217 ~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D- 290 (408)
T cd03313 217 DLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKK-----YPIVSIEDPFDEDD- 290 (408)
T ss_pred HHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC-
Confidence 4566777765543 24677766652100 000 11224555555555544444 45778888766544
Q ss_pred HHHHHHHHHHHHcC--ceeeec--cCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEE
Q 018137 163 EETVRAMNYVIDKG--WAFYWG--TSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 163 ~~~~~al~~L~~~G--~ir~iG--vs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~ 238 (360)
|+.+.+|.++- .+.-.| ...+++..+.++++.. -.+++|+..+-+---....++..+|+.+|+.++.
T Consensus 291 ---~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~------a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 291 ---WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKK------AANALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred ---HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhC------CCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 55666676663 444444 2345788888877652 2556666666432211234678899999999864
No 206
>PRK07094 biotin synthase; Provisional
Probab=25.80 E-value=5.4e+02 Score=23.85 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEe
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFD 81 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~D 81 (360)
.+.++..+.++.+.+.|++.|-
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~ 91 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIV 91 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE
Confidence 4788888999999999999774
No 207
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.75 E-value=1.9e+02 Score=25.40 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCC
Q 018137 129 RKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDL 203 (360)
Q Consensus 129 ~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 203 (360)
...+.+.+++.++.+|.+. .++ .+...+.++..+.++.+..+| +..|-++..++..+...++.+...|.
T Consensus 13 ~~~~~~g~~~~a~~~g~~~-~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gI 81 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEV-EIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGI 81 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEE-EEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCEE-EEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCc
Confidence 3568889999999999542 332 344455577789999999888 77777776666555566666666663
No 208
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=25.75 E-value=3.1e+02 Score=21.01 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=57.9
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHcCCCe-EecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCC
Q 018137 50 YGAWVSFGNQLDVKEAKSLLQCCRDHGVNF-FDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLS 128 (360)
Q Consensus 50 lG~~~~~~~~~~~~~~~~~l~~A~~~Gin~-~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~ 128 (360)
+||+ .+=.++++++..+-|+..+.+|.+. ++-|+. +..|...+-+-|+ |.....+
T Consensus 3 ~~t~-sylp~lt~~~i~~QI~yll~qG~~~~lE~ad~-----------------~~~~~~yW~mwkl------P~f~~~d 58 (99)
T cd03527 3 FETF-SYLPPLTDEQIAKQIDYIISNGWAPCLEFTEP-----------------EHYDNRYWTMWKL------PMFGCTD 58 (99)
T ss_pred cccc-ccCCCCCHHHHHHHHHHHHhCCCEEEEEcccC-----------------CCCCCCEEeeccC------CCCCCCC
Confidence 4566 3334678899999999999999862 322211 0146677877776 3333468
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEecC
Q 018137 129 RKHIVEGTKASLKRLDMDYVDVIYCHR 155 (360)
Q Consensus 129 ~~~i~~~~~~sL~~Lg~d~iDl~~lH~ 155 (360)
++.+...|++.++.-.-+||-|+=+..
T Consensus 59 ~~~Vl~ei~~C~~~~p~~YVRliG~D~ 85 (99)
T cd03527 59 PAQVLREIEACRKAYPDHYVRVVGFDN 85 (99)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 899999999999998888888776653
No 209
>PRK07328 histidinol-phosphatase; Provisional
Probab=25.58 E-value=5e+02 Score=23.42 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCCCeEecccCCCC------------ChHHHHHHHHHHhc-----CCCCCcEEEEeccccCCCCCCCCC
Q 018137 64 EAKSLLQCCRDHGVNFFDNAEVYAN------------GRAEEIMGQAIREL-----GWKRSDIVVSTKIFWGGQGPNDKG 126 (360)
Q Consensus 64 ~~~~~l~~A~~~Gin~~DTA~~Yg~------------G~sE~~lG~al~~~-----~~~R~~v~i~tK~~~~~~~~~~~~ 126 (360)
...+++.+|.+.|+..+=.+++... +.+.+-+-+.++.. .+.+=+|++.-=+.
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~---------- 88 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEAD---------- 88 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEec----------
Confidence 3668899999999998877766321 11111222222211 11111233332221
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCC-------------CCHHHHH----HHHHHHHHcCceeeeccCC----
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS-------------TPIEETV----RAMNYVIDKGWAFYWGTSE---- 185 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~-------------~~~~~~~----~al~~L~~~G~ir~iGvs~---- 185 (360)
.-+ .....+++.|++-..||+ +..+|+.+.. .+.++.+ +.+.++.+.|.+..+|=-.
T Consensus 89 ~~~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~ 166 (269)
T PRK07328 89 YHP-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKK 166 (269)
T ss_pred ccC-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHH
Confidence 112 233455666777677777 7788985421 1222333 3567777888877776111
Q ss_pred C-------CHHHHHHHHHHHhhcCCCCceeecc--cccccccchhhhchhhHHHhcCCeEE
Q 018137 186 W-------SAQQITEAWGIAERLDLVGPIVEQP--EYNMLSRHKVEAEYLPLYSNYGIGLT 237 (360)
Q Consensus 186 ~-------~~~~l~~~~~~~~~~~~~~~~~~q~--~~n~~~~~~~~~~~l~~~~~~gi~vi 237 (360)
+ ....++++++.+.+.|. .+.+|-- .+..-+..+ ...++..|++.|+.++
T Consensus 167 ~~~~~~~~~~~~~~~il~~~~~~g~-~lEiNt~~~r~~~~~~yp-~~~il~~~~~~g~~it 225 (269)
T PRK07328 167 FGHRPREDLTELYEEALDVIAAAGL-ALEVNTAGLRKPVGEIYP-SPALLRACRERGIPVV 225 (269)
T ss_pred cCCCCchhHHHHHHHHHHHHHHcCC-EEEEEchhhcCCCCCCCC-CHHHHHHHHHcCCCEE
Confidence 1 12334666666666652 2333321 111111111 3467888888888754
No 210
>PLN02363 phosphoribosylanthranilate isomerase
Probab=25.54 E-value=2.2e+02 Score=25.82 Aligned_cols=76 Identities=17% Similarity=0.071 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccC-CCCHHHHHHHHHHHhhcCCCC
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTS-EWSAQQITEAWGIAERLDLVG 205 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~~ 205 (360)
.+.++++.+ .++|.|||=+++..........+.+-+.. .......++.+||. +-+++.+.++.+. ..
T Consensus 55 t~~eda~~a-----~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~-~~l~~~~~~~VgVfv~~~~~~I~~~~~~------~~ 122 (256)
T PLN02363 55 TSARDAAMA-----VEAGADFIGMILWPKSKRSISLSVAKEIS-QVAREGGAKPVGVFVDDDANTILRAADS------SD 122 (256)
T ss_pred CcHHHHHHH-----HHcCCCEEEEecCCCCCCcCCHHHHHHHH-HhccccCccEEEEEeCCCHHHHHHHHHh------cC
Confidence 455555543 35899999997544333334444433333 33332236678975 8888877777664 45
Q ss_pred ceeeccccc
Q 018137 206 PIVEQPEYN 214 (360)
Q Consensus 206 ~~~~q~~~n 214 (360)
++++|++-+
T Consensus 123 ld~VQLHG~ 131 (256)
T PLN02363 123 LELVQLHGN 131 (256)
T ss_pred CCEEEECCC
Confidence 889999754
No 211
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=25.02 E-value=6e+02 Score=24.13 Aligned_cols=148 Identities=11% Similarity=0.032 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHH
Q 018137 61 DVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASL 140 (360)
Q Consensus 61 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 140 (360)
+.++..+.+..+++.|++.|=.=- .+.+ +++++. -.+++.|.--.. ...+.+...+ -+
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~v-~avre~--~G~~~~l~vDaN--------~~w~~~~A~~----~~ 183 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKLF-EAVREK--FGFEFHLLHDVH--------HRLTPNQAAR----FG 183 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHHH-HHHHhc--cCCCceEEEECC--------CCCCHHHHHH----HH
Confidence 345566666777788888764210 1222 223321 123444443331 1245544332 33
Q ss_pred HhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCcee-eeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccc
Q 018137 141 KRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAF-YWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRH 219 (360)
Q Consensus 141 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~ 219 (360)
+.|. .+++.++-.|-+..+ ++.+.+|++...+. ..|=|.++...+..+++.. -++++|+...-+---
T Consensus 184 ~~l~--~~~l~~iEeP~~~~d----~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~------a~di~~~d~~~~GGi 251 (361)
T cd03322 184 KDVE--PYRLFWMEDPTPAEN----QEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER------LIDYIRTTVSHAGGI 251 (361)
T ss_pred HHhh--hcCCCEEECCCCccc----HHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC------CCCEEecCccccCCH
Confidence 3342 347777887755433 67788888887665 5677788888888887652 266777776543211
Q ss_pred hhhhchhhHHHhcCCeEEEeccc
Q 018137 220 KVEAEYLPLYSNYGIGLTTWSPL 242 (360)
Q Consensus 220 ~~~~~~l~~~~~~gi~vi~~~pl 242 (360)
..-..+.++|+.+|+.++.++..
T Consensus 252 t~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 252 TPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHHHHHHHcCCeeeccCCC
Confidence 11246789999999999876543
No 212
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.95 E-value=3e+02 Score=23.05 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=32.3
Q ss_pred hchhhHHHhcCCeEEEecccccccccccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCC
Q 018137 223 AEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGV 295 (360)
Q Consensus 223 ~~~l~~~~~~gi~vi~~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~ 295 (360)
...+++|+..|+..+...+-..+.. +.. . ....++...+.+..+.++|+++|+
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~---------~~~---~--------~~~~~~~~~~~l~~l~~~a~~~gv 126 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSG---------PED---D--------TEENWERLAENLRELAEIAEEYGV 126 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSS---------TTS---S--------HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCceeecCcccccc---------cCC---C--------HHHHHHHHHHHHHHHHhhhhhhcc
Confidence 4568889999999887765421100 000 0 112345566677888888888875
No 213
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=24.95 E-value=6.9e+02 Score=24.77 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=58.8
Q ss_pred ccCCCCChHHHHHHHHHHhcC--CC-CCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCC----ccceEEecC
Q 018137 83 AEVYANGRAEEIMGQAIRELG--WK-RSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMD----YVDVIYCHR 155 (360)
Q Consensus 83 A~~Yg~G~sE~~lG~al~~~~--~~-R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d----~iDl~~lH~ 155 (360)
.-+||. |+-|-++++..- ++ .+=++|.|-+.. ..--|+|..-+++.-++++-+ .+.++.+|.
T Consensus 65 d~VfGG---~~~L~~~I~~~~~~~~~p~~I~V~tTC~~--------eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~t 133 (454)
T cd01973 65 SAVFGG---AKRVEEGVLVLARRYPDLRVIPIITTCST--------EIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHT 133 (454)
T ss_pred ceEECc---HHHHHHHHHHHHHhcCCCCEEEEECCchH--------hhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeC
Confidence 357775 666667776421 22 233677777632 122344444444433333111 478999999
Q ss_pred CCCCCCHHH-HHHHHHHHHH--------cCceeeeccCCCCHHHHHHHHHHHhhcC
Q 018137 156 PDTSTPIEE-TVRAMNYVID--------KGWAFYWGTSEWSAQQITEAWGIAERLD 202 (360)
Q Consensus 156 p~~~~~~~~-~~~al~~L~~--------~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 202 (360)
|+....... ...+++.+.+ +++|.-||-.+ ++.++.++.+.....|
T Consensus 134 pgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~G 188 (454)
T cd01973 134 PSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMD 188 (454)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcC
Confidence 988765332 2233333332 46788887442 3566666666666655
No 214
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.77 E-value=3.6e+02 Score=28.32 Aligned_cols=71 Identities=6% Similarity=-0.062 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHc--CceeeeccCCCCHHHHHHHHHHHh
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDK--GWAFYWGTSEWSAQQITEAWGIAE 199 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~--G~ir~iGvs~~~~~~l~~~~~~~~ 199 (360)
.+.+.|++-++.....-....--+|+|+..+..+ .+.+.+|-+..++ +.++.|.++|....-+..+...|.
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence 4456677666655443333455688888765543 2456666666666 889999999987666666666554
No 215
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=24.61 E-value=4.5e+02 Score=25.12 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=58.4
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHcCceeee--------ccCCCCHHHHHHHHHHHhhcCCCCceeecc
Q 018137 151 IYCHRPDTS-----------TPIEETVRAMNYVIDKGWAFYW--------GTSEWSAQQITEAWGIAERLDLVGPIVEQP 211 (360)
Q Consensus 151 ~~lH~p~~~-----------~~~~~~~~al~~L~~~G~ir~i--------Gvs~~~~~~l~~~~~~~~~~~~~~~~~~q~ 211 (360)
+.||.|+.. .++++++++.+.-.+... +.| || |.+.+...++.+..+. ++..++-+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~V-ND~~e~A~~L~~ll~~---~~~~VNLI 290 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGV-NDSLEHAKELAKLLKG---IPCKVNLI 290 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccc-cCCHHHHHHHHHHhcC---CCceEEEe
Confidence 678998653 356777777776665433 333 33 5557777777777654 45589999
Q ss_pred cccccccchhh-------hchhhHHHhcCCeEEEeccccc
Q 018137 212 EYNMLSRHKVE-------AEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 212 ~~n~~~~~~~~-------~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
+||+..-..++ ..+.+...++||.+....+-+.
T Consensus 291 P~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 291 PYNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred ecCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 99998655432 2345666678888887766544
No 216
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=24.51 E-value=7.5e+02 Score=25.04 Aligned_cols=104 Identities=16% Similarity=0.199 Sum_probs=57.7
Q ss_pred cCCCCChHHH----HHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC
Q 018137 84 EVYANGRAEE----IMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS 159 (360)
Q Consensus 84 ~~Yg~G~sE~----~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~ 159 (360)
-+||. |+ .|-++++..+ ..+-++|.|=+.. ...-|+|..-+++.-++.. -++++.+|.|+..
T Consensus 107 iVfGG---e~kL~~~I~ea~~~~~-~p~~I~V~tTC~t--------~lIGDDi~av~k~~~~~~~--~~pVi~v~tpGF~ 172 (513)
T TIGR01861 107 VVFGA---EKLLKQNIIEAFKAFP-HIKRMTIYQTCAT--------ALIGDDIAAIAKEVMEEMP--DVDIFVCNSPGFA 172 (513)
T ss_pred eEeCc---HHHHHHHHHHHHHhCC-CCCeEEEEccCch--------hhccCCHHHHHHHHHHhcC--CCcEEEEeCCCcc
Confidence 46764 55 4555555531 2456888888742 2445666666666555541 2789999999876
Q ss_pred CC-----HHHHHHH-HHHHHH--------cCceeeeccCCCCHHHHHHHHHHHhhcC
Q 018137 160 TP-----IEETVRA-MNYVID--------KGWAFYWGTSEWSAQQITEAWGIAERLD 202 (360)
Q Consensus 160 ~~-----~~~~~~a-l~~L~~--------~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 202 (360)
.. ...+..+ ++.++. .+.|.-||-.|+. .++.++.++....|
T Consensus 173 G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~-gD~~eik~lLe~~G 228 (513)
T TIGR01861 173 GPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQ-GDQEVMVDYFQRMG 228 (513)
T ss_pred CccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCc-cCHHHHHHHHHHCC
Confidence 52 2222322 233331 2568888855543 33444444545555
No 217
>PRK00549 competence damage-inducible protein A; Provisional
Probab=24.42 E-value=1.9e+02 Score=28.31 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHH
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVE 134 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~ 134 (360)
..+.-+-....+.|++.....-.- +.++.|-++++... .+.+++|+| .|.|. ...|.+++.+.+
T Consensus 20 tN~~~L~~~L~~~G~~v~~~~~v~---Dd~~~I~~~l~~a~-~~~DlVItT-GGlGp---t~dD~t~ea~a~ 83 (414)
T PRK00549 20 TNAQFLSEKLAELGIDVYHQTVVG---DNPERLLSALEIAE-ERSDLIITT-GGLGP---TKDDLTKETVAK 83 (414)
T ss_pred hhHHHHHHHHHHCCCeEEEEEEeC---CCHHHHHHHHHHhc-cCCCEEEEC-CCCCC---CCCccHHHHHHH
Confidence 344444455567899988765553 34677778887542 577899998 54443 333444444333
No 218
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=24.39 E-value=1.3e+02 Score=28.95 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHhcCCCCCcEEEEeccccCC---CCCCCCCCC----HHHHHHHHHHHHHhhCCCccceEEecCCCCC-C
Q 018137 89 GRAEEIMGQAIRELGWKRSDIVVSTKIFWGG---QGPNDKGLS----RKHIVEGTKASLKRLDMDYVDVIYCHRPDTS-T 160 (360)
Q Consensus 89 G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~---~~~~~~~~~----~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~-~ 160 (360)
..++..+.+.++..+ ..=+||-||+-.-. ....+..++ -+.|++.|.+.|++-|+..-.+|++-+.+.. .
T Consensus 127 ~~ndv~La~~i~~~g--K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~y 204 (376)
T PF05049_consen 127 TENDVQLAKEIQRMG--KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKY 204 (376)
T ss_dssp -HHHHHHHHHHHHTT---EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTST
T ss_pred chhhHHHHHHHHHcC--CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccC
Confidence 567888999999853 44578999983200 001111233 3568888999999999999999999887654 3
Q ss_pred CHHHHHHHHHH
Q 018137 161 PIEETVRAMNY 171 (360)
Q Consensus 161 ~~~~~~~al~~ 171 (360)
++..+.++|+.
T Consensus 205 DFp~L~~tL~~ 215 (376)
T PF05049_consen 205 DFPKLEETLEK 215 (376)
T ss_dssp THHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 56666666653
No 219
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=24.33 E-value=3.2e+02 Score=26.88 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=47.7
Q ss_pred HHHHHcCceeeeccCCCCHHHHHHHHHHHhhc-C-CCCceeecccccccccchhhhchhhHHHhcCCeEEEecc
Q 018137 170 NYVIDKGWAFYWGTSEWSAQQITEAWGIAERL-D-LVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSP 241 (360)
Q Consensus 170 ~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~-~-~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~p 241 (360)
..+-+.|-+-.+|....+++++++.++..+.. . --++-+|-+ .++-++. .+.+++++|.++||.++..+.
T Consensus 32 aAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~-~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 32 VAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPE-LEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCch-hHHHHHHHHHHcCCCEEEecc
Confidence 34567899999999999999999998887652 1 123444432 2222222 245689999999998876653
No 220
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=24.22 E-value=6.1e+02 Score=24.56 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCC--ChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHH
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYAN--GRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASL 140 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~--G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 140 (360)
++..++++.|++.|+.-|=+...|.. +.++..+-+.++.. .+-+..+.+-.- +........+.+.++-+
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a--~~~g~~v~~H~e------~~~~~e~~av~~~~~~a- 237 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVA--ARYGGVYQTHVR------YEGDSILEALDELLRLG- 237 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHH--HHcCCEEEEEEC------cccccHHHHHHHHHHHH-
Confidence 34566788889999987766555543 44566666666542 122445555541 11112233344444333
Q ss_pred HhhCCCccceEEecCCCCC----CCHHHHHHHHHHHHHcCceeeeccCC
Q 018137 141 KRLDMDYVDVIYCHRPDTS----TPIEETVRAMNYVIDKGWAFYWGTSE 185 (360)
Q Consensus 141 ~~Lg~d~iDl~~lH~p~~~----~~~~~~~~al~~L~~~G~ir~iGvs~ 185 (360)
++.|. -+...|-.... ..+.++++.+++.+++|.--...++.
T Consensus 238 ~~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p 283 (415)
T cd01297 238 RETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYP 283 (415)
T ss_pred HHhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 23342 35556643222 23455566666777776433333443
No 221
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=24.10 E-value=4.1e+02 Score=22.68 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=45.5
Q ss_pred HHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccc--
Q 018137 72 CRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVD-- 149 (360)
Q Consensus 72 A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iD-- 149 (360)
|...|..++--+-. |+|.-|..+.+.|++. ..++++..=. . + .+++.+++.+...++.+.-.+-|
T Consensus 29 aR~l~~~~iNLGfs-G~~~le~~~a~~ia~~---~a~~~~ld~~-~-----N---~~~~~~~~~~~~fv~~iR~~hP~tP 95 (178)
T PF14606_consen 29 ARRLGLDVINLGFS-GNGKLEPEVADLIAEI---DADLIVLDCG-P-----N---MSPEEFRERLDGFVKTIREAHPDTP 95 (178)
T ss_dssp HHHHT-EEEEEE-T-CCCS--HHHHHHHHHS-----SEEEEEES-H-----H---CCTTTHHHHHHHHHHHHHTT-SSS-
T ss_pred HHHcCCCeEeeeec-CccccCHHHHHHHhcC---CCCEEEEEee-c-----C---CCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 55668777765433 6678899999999983 3366655443 2 2 78889999999999999877744
Q ss_pred eEEec
Q 018137 150 VIYCH 154 (360)
Q Consensus 150 l~~lH 154 (360)
++++-
T Consensus 96 Illv~ 100 (178)
T PF14606_consen 96 ILLVS 100 (178)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 45443
No 222
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=23.86 E-value=1.7e+02 Score=29.03 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=41.0
Q ss_pred HHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccC-CCCHHHHHHHHHHHhhcCCCCceeeccccc
Q 018137 140 LKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTS-EWSAQQITEAWGIAERLDLVGPIVEQPEYN 214 (360)
Q Consensus 140 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n 214 (360)
...+|.|+|=+.+........+.+.+-+....+. ++.+||. |-+++.+.++.+. ..++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~------~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQ------LSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHH------cCCCEEEeCCC
Confidence 3457888888875443333444444333333222 8889976 8888877777665 44889999875
No 223
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=23.83 E-value=2.1e+02 Score=24.72 Aligned_cols=71 Identities=11% Similarity=0.064 Sum_probs=43.4
Q ss_pred hhHHHhcCCeEEE-ecccccccccccccCCCCCCCCccchhhhhhhhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018137 226 LPLYSNYGIGLTT-WSPLASGVLTGKYNKGSIPPDSRFALENYKNLASRSLVDDVLNKVNRLKPIADELGVPLAQLAIAW 304 (360)
Q Consensus 226 l~~~~~~gi~vi~-~~pl~~G~L~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~ 304 (360)
-+.++++||.++. +..-+||...+-+.-. .+ . .. .. ....+...+.+.++.+.++++++++.+.|+..
T Consensus 125 ~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~---~~-~-~~-~~-----~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 125 GQMLHERGILYAPDYVVNAGGLINVADELY---GG-N-EA-RV-----LAKVEAIYDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred HHHHHHCCCEEeCceeeeCcCceeehhHHh---CC-c-HH-HH-----HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4566788988888 7666777664322110 00 0 00 00 01123345566778888999999999999887
Q ss_pred HHc
Q 018137 305 CAS 307 (360)
Q Consensus 305 ~l~ 307 (360)
++.
T Consensus 194 a~~ 196 (200)
T cd01075 194 AEE 196 (200)
T ss_pred HHH
Confidence 764
No 224
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.75 E-value=6.4e+02 Score=23.96 Aligned_cols=92 Identities=18% Similarity=0.154 Sum_probs=58.1
Q ss_pred eEEecCCCCC-----------CCHHHHHHHHHH-HHHcCc---eeeeccC--CCCHHHHHHHHHHHhhcCCCCceeeccc
Q 018137 150 VIYCHRPDTS-----------TPIEETVRAMNY-VIDKGW---AFYWGTS--EWSAQQITEAWGIAERLDLVGPIVEQPE 212 (360)
Q Consensus 150 l~~lH~p~~~-----------~~~~~~~~al~~-L~~~G~---ir~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~~q~~ 212 (360)
++-||.+++. .+++++.+++.+ +.+.|. |+++=+. |.+.+.++++.++.+.. ...++-++
T Consensus 211 aisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l---~~~VnLiP 287 (342)
T PRK14454 211 AISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKGM---LCHVNLIP 287 (342)
T ss_pred EEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcC---CceEEEEe
Confidence 6778998763 245667666655 344454 4554444 66778888888887642 34566788
Q ss_pred ccccccchh-------hhchhhHHHhcCCeEEEeccccc
Q 018137 213 YNMLSRHKV-------EAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 213 ~n~~~~~~~-------~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
||++....+ -..+.+..+++|+.+......+.
T Consensus 288 yn~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR~~~G~ 326 (342)
T PRK14454 288 VNEVKENGFKKSSKEKIKKFKNILKKNGIETTIRREMGS 326 (342)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 988653221 12345667788999888765543
No 225
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=23.74 E-value=6.9e+02 Score=24.36 Aligned_cols=188 Identities=13% Similarity=0.146 Sum_probs=103.7
Q ss_pred ccCccccccccccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCC----hHHHHHHHHHHhc---CCCCCcEEEEeccc
Q 018137 44 RVSQLSYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANG----RAEEIMGQAIREL---GWKRSDIVVSTKIF 116 (360)
Q Consensus 44 ~vs~lglG~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G----~sE~~lG~al~~~---~~~R~~v~i~tK~~ 116 (360)
.|=+++.|-=..++.-.+..++.+.+..|++.|- ...|+.. .+.+.+.+.|.+. .+..++||+++-+.
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~ 136 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS 136 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccch
Confidence 5656676643223332345778888888888874 3466542 4677788886532 36688999998873
Q ss_pred cCC---------CCCC----CCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeecc
Q 018137 117 WGG---------QGPN----DKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGT 183 (360)
Q Consensus 117 ~~~---------~~~~----~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGv 183 (360)
... .+.+ ..++.-...+ ..-..|-+.|.|+ |- +.+++--++.++.|.++.-+--+=+
T Consensus 137 qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~----a~~~~lEVR~ydl--LP----e~~weIDL~~veal~DENT~Aivvi 206 (447)
T KOG0259|consen 137 QAIELAISSLANPGANILLPRPGFPLYDTR----AIYSGLEVRYYDL--LP----EKDWEIDLDGVEALADENTVAIVVI 206 (447)
T ss_pred HHHHHHHHHhcCCCCceecCCCCCchHHHh----hhhcCceeEeecc--cC----cccceechHHHHHhhccCeeEEEEe
Confidence 110 0000 1122222211 1223445556665 22 1222323677888888876655543
Q ss_pred -------CCCCHHHHHHHHHHHhhcCCCCceeecc-cccccccchhhhchhhHHH-hcCCeEEEecccccccccccc
Q 018137 184 -------SEWSAQQITEAWGIAERLDLVGPIVEQP-EYNMLSRHKVEAEYLPLYS-NYGIGLTTWSPLASGVLTGKY 251 (360)
Q Consensus 184 -------s~~~~~~l~~~~~~~~~~~~~~~~~~q~-~~n~~~~~~~~~~~l~~~~-~~gi~vi~~~pl~~G~L~g~~ 251 (360)
+.|+-..|+++.+.++++|+ .+..-.+ .+.++... .+++..+ ..-+.|+.-+.+..|++.-.|
T Consensus 207 NP~NPcGnVys~~HL~kiae~A~klgi-~vIaDEVY~~~vfg~~----pfvpmg~fssiVPVitlggisKrW~VPGW 278 (447)
T KOG0259|consen 207 NPNNPCGNVYSEDHLKKIAETAKKLGI-MVIADEVYGHTVFGDK----PFVPMGKFSSIVPVITLGGISKRWIVPGW 278 (447)
T ss_pred CCCCCCcccccHHHHHHHHHHHHHhCC-eEEehhhcceeecCCC----CccchhhccccCceEeecccccccccCCc
Confidence 34667789999999998874 2222222 22222222 2333332 234677887777777765444
No 226
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=23.73 E-value=6.2e+02 Score=23.83 Aligned_cols=125 Identities=12% Similarity=0.066 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHc-CCCeEecccCCCCCh----HHHHHHHHHH---hcCCCCCcEEEEeccccCCCCCCCCCCCHHHHH
Q 018137 62 VKEAKSLLQCCRDH-GVNFFDNAEVYANGR----AEEIMGQAIR---ELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIV 133 (360)
Q Consensus 62 ~~~~~~~l~~A~~~-Gin~~DTA~~Yg~G~----sE~~lG~al~---~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~ 133 (360)
.++..++++...++ |++-+-- .| |+ +...+.+.++ +.+ .-..+.+.|+... .-+..|.
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~l---sG-GDPLl~~d~~L~~ll~~L~~i~-~~~~IRi~tr~~~---------~~P~rit 209 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILI---SG-GDPLMAKDHELEWLLKRLEEIP-HLVRLRIGTRLPV---------VIPQRIT 209 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEE---EC-CccccCCHHHHHHHHHHHHhcC-CccEEEeecCCCc---------cCchhcC
Confidence 56777777776544 6765542 22 21 1222333333 221 1234667777521 2233444
Q ss_pred HHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeecc-----CCCCHHHHHHHHHHHhhcC
Q 018137 134 EGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGT-----SEWSAQQITEAWGIAERLD 202 (360)
Q Consensus 134 ~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGv-----s~~~~~~l~~~~~~~~~~~ 202 (360)
..+-+.|++.|...+. ..|.-.+....+++.++++.|++.|..-.+=. .|.+.+.+.++.+.....|
T Consensus 210 ~el~~~L~~~~~~~~~--vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~g 281 (331)
T TIGR00238 210 DELCELLASFELQLML--VTHINHCNEITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVG 281 (331)
T ss_pred HHHHHHHHhcCCcEEE--EccCCChHhCCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcC
Confidence 5555667666654332 33432111123567788888888876332211 1444555555555544333
No 227
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=23.65 E-value=5.7e+02 Score=23.42 Aligned_cols=113 Identities=6% Similarity=-0.047 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHH---hhCCCccceEEecCCCC-CCCHHHHHHHHHHHHHcCceeeeccC----CCCHHHHHHHHHHH
Q 018137 127 LSRKHIVEGTKASLK---RLDMDYVDVIYCHRPDT-STPIEETVRAMNYVIDKGWAFYWGTS----EWSAQQITEAWGIA 198 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~---~Lg~d~iDl~~lH~p~~-~~~~~~~~~al~~L~~~G~ir~iGvs----~~~~~~l~~~~~~~ 198 (360)
.+++.+.+.+.+..+ ..| .++.+..-+...+ ..+.+.+.+..+.+.+.| +..|.++ ...|+++.++++..
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G-~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNG-IEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCC-CEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHH
Confidence 456666666665554 334 3566666663322 345677778888888887 5667654 56788888877766
Q ss_pred hhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccc
Q 018137 199 ERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 199 ~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
+.. . +. +.+.+|.-+....-..-.-.+-+.|+..+--+..+-|
T Consensus 186 ~~~--~-~~-~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlG 228 (280)
T cd07945 186 VKR--Y-PN-LHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLG 228 (280)
T ss_pred Hhh--C-CC-CeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc
Confidence 531 1 11 1233333222210111122344678888776665555
No 228
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=23.61 E-value=5.3e+02 Score=23.03 Aligned_cols=85 Identities=14% Similarity=0.040 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCC------CC-----hHHHHHHHHHHhcC----CCCCcEEEEeccccCCCCCCCCCC
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYA------NG-----RAEEIMGQAIRELG----WKRSDIVVSTKIFWGGQGPNDKGL 127 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg------~G-----~sE~~lG~al~~~~----~~R~~v~i~tK~~~~~~~~~~~~~ 127 (360)
....+++++|.+.|+..+=-+++.. .. .+.+-+-+.++... .-++++ .-++|.- .+.
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i--~I~~GiE------~~~ 86 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKL--KILIGLE------VDY 86 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCC--eEEEEEE------ecc
Confidence 3567899999999999876665521 10 12222333332110 012222 2222210 011
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEecCCC
Q 018137 128 SRKHIVEGTKASLKRLDMDYVDVIYCHRPD 157 (360)
Q Consensus 128 ~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~ 157 (360)
-+ .-...+++.|++.+.||+ +.-+|+..
T Consensus 87 ~~-~~~~~~~~~l~~~~~D~v-igSvH~~~ 114 (253)
T TIGR01856 87 IP-GFEDFTKDFLDEYGLDFV-IGSVHFLG 114 (253)
T ss_pred cc-chHHHHHHHHHHCCCCeE-EEEEEeec
Confidence 22 233556778888888888 88889764
No 229
>PRK03995 hypothetical protein; Provisional
Probab=23.51 E-value=2.7e+02 Score=25.50 Aligned_cols=66 Identities=21% Similarity=0.120 Sum_probs=36.4
Q ss_pred HHHHHcCCCeEecccCCCCC-hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 018137 70 QCCRDHGVNFFDNAEVYANG-RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDY 147 (360)
Q Consensus 70 ~~A~~~Gin~~DTA~~Yg~G-~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~ 147 (360)
+.+++.++.+=-..+.|.-. .+++++-+++.++...-+.++|--|. .....++.+.+.|+.+|++.
T Consensus 198 ~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~------------~k~~~r~~i~~~le~~gi~v 264 (267)
T PRK03995 198 KLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKG------------VKSEDRERIIEFLEELGIEV 264 (267)
T ss_pred HHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCC------------CCHHHHHHHHHHHHHCCCeE
Confidence 34455555544445555432 46677777777642111223333342 33457778888888888654
No 230
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.30 E-value=5.6e+02 Score=23.33 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceE
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVI 151 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~ 151 (360)
++.+...+ +-..|.++|+++|++-
T Consensus 18 ~~~~~~~~-ia~~L~~~Gv~~iE~G 41 (275)
T cd07937 18 MRTEDMLP-IAEALDEAGFFSLEVW 41 (275)
T ss_pred ccHHHHHH-HHHHHHHcCCCEEEcc
Confidence 45555544 5788999999988887
No 231
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=23.13 E-value=3.4e+02 Score=22.95 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCCChHH-------HH---HHHHHHhcCCCCCcEEEEecc
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYANGRAE-------EI---MGQAIRELGWKRSDIVVSTKI 115 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE-------~~---lG~al~~~~~~R~~v~i~tK~ 115 (360)
.-..+++++|-+.|+..+-|.-.+|-|.-| +. +...|.+.+.+ |.+.+.|--
T Consensus 121 PvTaaii~ya~~rG~~TisT~GVFGigeEev~v~~~eeA~gP~~~~lldeg~~-dHilVgTgk 182 (217)
T COG4015 121 PVTAAIINYAKERGIKTISTNGVFGIGEEEVKVCDAEEAKGPAKFLLLDEGGP-DHILVGTGK 182 (217)
T ss_pred hhHHHHHHHHHHcCceEeecCceeecchhheEEeehhhcCccHHHHHHhcCCC-ceEEEecCc
Confidence 456789999999999999999999876432 22 33444455554 666666644
No 232
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=23.13 E-value=6.8e+02 Score=24.06 Aligned_cols=97 Identities=7% Similarity=0.123 Sum_probs=58.5
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHH
Q 018137 85 VYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 164 (360)
Q Consensus 85 ~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~ 164 (360)
.||.| +-..+++.+++.+. ++++|.|--+ .....+.+.+.++|+..|. +...+....++-..+.
T Consensus 13 ~~G~g-~~~~l~~~~~~~g~--~~~livt~~~----------~~~~g~~~~v~~~L~~~~i---~~~~f~~v~~np~~~~ 76 (383)
T PRK09860 13 VIGAD-SLTDAMNMMADYGF--TRTLIVTDNM----------LTKLGMAGDVQKALEERNI---FSVIYDGTQPNPTTEN 76 (383)
T ss_pred EECcC-HHHHHHHHHHhcCC--CEEEEEcCcc----------hhhCccHHHHHHHHHHcCC---eEEEeCCCCCCcCHHH
Confidence 35655 44557898988653 4566665321 1122345568888887774 4455555444555666
Q ss_pred HHHHHHHHHHcCceeeeccCCCCHHHHHHHHHH
Q 018137 165 TVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGI 197 (360)
Q Consensus 165 ~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~ 197 (360)
+.++.+..++.+-=--|||..-+.-+..+++..
T Consensus 77 v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~ 109 (383)
T PRK09860 77 VAAGLKLLKENNCDSVISLGGGSPHDCAKGIAL 109 (383)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHH
Confidence 667776666665444467777777776666654
No 233
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=22.96 E-value=1.6e+02 Score=29.13 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHH
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEA 194 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~ 194 (360)
.+.+...+.+.++|+.||+++ |-++ .....++...+++++|+++|++ +... .+.+++++.
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~y----~QSer~~~y~~~~e~L~e~G~A-Y~C~--Ct~eel~~~ 107 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRTF----RQSDRFDRYDEAAEKLKAAGRL-YPCY--ETPEELELK 107 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-Cccc----cHHHHHHHHHHHHHHHHHCCCE-EEec--CchHHHHHH
Confidence 566889999999999999874 6421 1122234456888999999985 4443 344455443
No 234
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=22.92 E-value=1.6e+02 Score=29.89 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccccc
Q 018137 189 QQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~G 245 (360)
..|++.++.++..|+ ++.|.-+.|. .|....-..+.++|+++|+.++....++.|
T Consensus 359 ~NL~RHIenvr~FGv-PvVVAINKFd-~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 359 ANLERHIENIRKFGV-PVVVAINKFV-TDTDAEIAALKELCEELGVEVALSEVWAKG 413 (557)
T ss_pred HHHHHHHHHHHHcCC-CEEEEEeCCC-CCCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 346777888888884 4444433443 344432345778999999999877766665
No 235
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=22.89 E-value=5.9e+02 Score=23.27 Aligned_cols=114 Identities=13% Similarity=0.135 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEecCCCC---CCCHHHHHHHHHHHHH--cCce-eeeccCCCCHHHHHHHHHHH
Q 018137 125 KGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDT---STPIEETVRAMNYVID--KGWA-FYWGTSEWSAQQITEAWGIA 198 (360)
Q Consensus 125 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~---~~~~~~~~~al~~L~~--~G~i-r~iGvs~~~~~~l~~~~~~~ 198 (360)
...+.+.+++-++..++.+|+ |-+++-.-.- ....+|-.+.++..++ .|++ ...|++..+..+..+..+.+
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv---~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGV---DGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCC---CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHH
Confidence 357888888888888886675 4455554322 2234554444444443 3554 34589888888888888888
Q ss_pred hhcCCCCceeecccccccccchhhhchhhHHHhc-CCeEEEecc
Q 018137 199 ERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNY-GIGLTTWSP 241 (360)
Q Consensus 199 ~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~-gi~vi~~~p 241 (360)
.+.|.-...+....|...++.....-+...|+.- ++.++.|.-
T Consensus 93 ~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 93 EELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred HHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 8877432223333333333221111123345566 889999863
No 236
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=22.75 E-value=3.5e+02 Score=20.65 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=53.1
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHcCCCe-EecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCC
Q 018137 50 YGAWVSFGNQLDVKEAKSLLQCCRDHGVNF-FDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLS 128 (360)
Q Consensus 50 lG~~~~~~~~~~~~~~~~~l~~A~~~Gin~-~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~ 128 (360)
|+|+ .+-.++++++..+-|+..+..|.+. ++-|+.=. .|...+-.-|.. .....+
T Consensus 2 ~et~-S~lP~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r~-----------------~r~~~W~mW~~p------~~~~~~ 57 (99)
T PF00101_consen 2 FETF-SYLPPLTDEEIAKQVRYLLSQGWIIGIEHADPRR-----------------FRTSYWQMWKLP------MFGCTD 57 (99)
T ss_dssp -STT-TTSS---HHHHHHHHHHHHHTT-EEEEEEESCGG-----------------STSSS-EEESSE------BTTBSS
T ss_pred Cccc-ccCCCCCHHHHHHHHHhhhhcCceeeEEecCCCC-----------------CCCCEeecCCCC------CcCCCC
Confidence 4555 3334567889999999999999875 54333221 244555555652 233478
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEecC
Q 018137 129 RKHIVEGTKASLKRLDMDYVDVIYCHR 155 (360)
Q Consensus 129 ~~~i~~~~~~sL~~Lg~d~iDl~~lH~ 155 (360)
++.+...|++.++.-.-+||-|+=+.+
T Consensus 58 ~~~Vl~el~~c~~~~p~~yVRlig~D~ 84 (99)
T PF00101_consen 58 PAQVLAELEACLAEHPGEYVRLIGFDN 84 (99)
T ss_dssp HHHHHHHHHHHHHHSTTSEEEEEEEET
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 899999999999999889998876654
No 237
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=22.45 E-value=7.4e+02 Score=24.27 Aligned_cols=97 Identities=8% Similarity=-0.016 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcC--ceeeec-c-CCCCHHHHHHHHHHHhhcC
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKG--WAFYWG-T-SEWSAQQITEAWGIAERLD 202 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G--~ir~iG-v-s~~~~~~l~~~~~~~~~~~ 202 (360)
.+++...+-+++.++. .++.++-.|-+..+ ++.+.+|.+.- .+.-.| = ...+++.+.++++.-
T Consensus 262 ~s~~eai~~~~~lle~-----~~i~~iEdPl~~~D----~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~---- 328 (425)
T TIGR01060 262 LTSEEMIEYYKELVEK-----YPIVSIEDGLSEED----WEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMG---- 328 (425)
T ss_pred cCHHHHHHHHHHHHhc-----CCcEEEEcCCCccc----HHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhC----
Confidence 3555555544444433 46777887765433 56677776654 555444 2 233588888877642
Q ss_pred CCCceeecccccccccchhhhchhhHHHhcCCeEEE
Q 018137 203 LVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTT 238 (360)
Q Consensus 203 ~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~ 238 (360)
-.+++|+..+-+---....++..+|+.+|+.++.
T Consensus 329 --a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 329 --VANSILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred --CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 2566777666432211234678899999998554
No 238
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=22.42 E-value=1.6e+02 Score=28.08 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=63.8
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHH
Q 018137 85 VYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 164 (360)
Q Consensus 85 ~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~ 164 (360)
.||.| +-+.+++.++..+ .=++|+.+. .....+.+.+...|++-+.++ ..+......-+.+.
T Consensus 5 ~~G~g-~l~~l~~~l~~~g---r~lvVt~~~-----------~~~~~~~~~v~~~L~~~~i~~---~~~~~~~~~p~~~~ 66 (366)
T PF00465_consen 5 IFGRG-ALEELGEELKRLG---RVLVVTDPS-----------LSKSGLVDRVLDALEEAGIEV---QVFDGVGPNPTLED 66 (366)
T ss_dssp EESTT-GGGGHHHHHHCTT---EEEEEEEHH-----------HHHHTHHHHHHHHHHHTTCEE---EEEEEESSS-BHHH
T ss_pred EEccC-HHHHHHHHHHhcC---CEEEEECch-----------HHhCccHHHHHHHHhhCceEE---EEEecCCCCCcHHH
Confidence 45655 5788899998753 234555553 233347778888888877544 44454445556777
Q ss_pred HHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHh
Q 018137 165 TVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAE 199 (360)
Q Consensus 165 ~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~ 199 (360)
+.++.+.+++.|-=--|||..-+.-++.+++....
T Consensus 67 v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~ 101 (366)
T PF00465_consen 67 VDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLL 101 (366)
T ss_dssp HHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhc
Confidence 88888888888765566777777777777766654
No 239
>PRK15108 biotin synthase; Provisional
Probab=22.41 E-value=6.7e+02 Score=23.75 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEecccCCCC--ChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHH
Q 018137 60 LDVKEAKSLLQCCRDHGVNFFDNAEVYAN--GRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTK 137 (360)
Q Consensus 60 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~--G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 137 (360)
++.++..+..+.+.+.|++-|--.....+ ...-+.+-+.++.. +...+.++.-.+ ..+.+.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~i--k~~~i~v~~s~G---------~ls~e~l----- 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGV--KAMGLETCMTLG---------TLSESQA----- 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHH--HhCCCEEEEeCC---------cCCHHHH-----
Confidence 68888999999888999998854322111 11235566666542 111232322121 1343333
Q ss_pred HHHHhhCCCccceEEecCC------CCCCCHHHHHHHHHHHHHcCceee----eccCCCCHHHHHHHHHHHh
Q 018137 138 ASLKRLDMDYVDVIYCHRP------DTSTPIEETVRAMNYVIDKGWAFY----WGTSEWSAQQITEAWGIAE 199 (360)
Q Consensus 138 ~sL~~Lg~d~iDl~~lH~p------~~~~~~~~~~~al~~L~~~G~ir~----iGvs~~~~~~l~~~~~~~~ 199 (360)
+-|+..|+|.+.+-+==.| .....+++.++.++.+++.|.--. +|+. .+.+++.+.+...+
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg-Et~ed~v~~~~~l~ 210 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG-ETVKDRAGLLLQLA 210 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC-CCHHHHHHHHHHHH
Confidence 3466667775432110011 112357788899999999886333 3453 34444444444333
No 240
>PRK07329 hypothetical protein; Provisional
Probab=22.24 E-value=5.6e+02 Score=22.80 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=55.0
Q ss_pred HHHHHHHHhhCCCccceEEecCCCCC---------CCHHHHH----HHHHHHHHcC-ceeeec---c-------CCCC--
Q 018137 134 EGTKASLKRLDMDYVDVIYCHRPDTS---------TPIEETV----RAMNYVIDKG-WAFYWG---T-------SEWS-- 187 (360)
Q Consensus 134 ~~~~~sL~~Lg~d~iDl~~lH~p~~~---------~~~~~~~----~al~~L~~~G-~ir~iG---v-------s~~~-- 187 (360)
..+++-|.+...||+ +.-+|+.+.. .+.++.+ +.+.++++.+ ++..+| + ...+
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 445566666777888 8888985321 2233333 7777777776 666655 1 1111
Q ss_pred --HHHHHHHHHHHhhcCCCCceeeccccc-ccccchhhhchhhHHHhcCCeEEEec
Q 018137 188 --AQQITEAWGIAERLDLVGPIVEQPEYN-MLSRHKVEAEYLPLYSNYGIGLTTWS 240 (360)
Q Consensus 188 --~~~l~~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~l~~~~~~gi~vi~~~ 240 (360)
...++++++.+...|. .+.+|-..+. -..... -..++..|++.|+..+..+
T Consensus 162 ~~~~~~~~i~~~~~~~~~-~lEiNt~~~~~~~~~~~-~~~~l~~~~~~g~~~i~~g 215 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDL-AFELNTKSMYLYGNEGL-YRYAIELYKQLGGKLFSIG 215 (246)
T ss_pred HHHHHHHHHHHHHHHcCC-eEEEECcccccCCCCcc-hHHHHHHHHHcCCeEEEec
Confidence 2334566666666552 2333332211 001111 1346888888887644443
No 241
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=22.23 E-value=1.4e+02 Score=27.90 Aligned_cols=168 Identities=15% Similarity=0.224 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHcCCC-eEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 018137 63 KEAKSLLQCCRDHGVN-FFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLK 141 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin-~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 141 (360)
+...+++..|.+.|+. +||.=..+-....-.++-+.++.....+..++++--.+. .-+++.+.+.++.+-+
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~~~~~~~~~~~~~~~~~~~~~vg~tlQaYL--------~~t~~~l~~l~~~a~~ 163 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQDAILDLFLELMRKYNKGWPNVGITLQAYL--------KRTPDDLERLLELARR 163 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGHHHHHHHHHHHCCHHGTT--SEEEEEETTB--------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccchHHHHHHHHHHhhHhhCCCCeEEEEEechh--------hchHHHHHHHHHHHHH
Confidence 3567888999999988 566544443312222222211122223455676666542 2566777776666553
Q ss_pred h---hC-----CCccceEE-------ecCCCCCCCH---HHHHHHHHHHHHcCc-e--eeeccCCCCHHHHHHHHHHHhh
Q 018137 142 R---LD-----MDYVDVIY-------CHRPDTSTPI---EETVRAMNYVIDKGW-A--FYWGTSEWSAQQITEAWGIAER 200 (360)
Q Consensus 142 ~---Lg-----~d~iDl~~-------lH~p~~~~~~---~~~~~al~~L~~~G~-i--r~iGvs~~~~~~l~~~~~~~~~ 200 (360)
+ +| --|++-=- ++.|...... +.....+..+..++. - -+++|.+|+...+..+.+.+..
T Consensus 164 ~g~~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~~a~~l~~~ 243 (313)
T PF01619_consen 164 RGFRLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIALALELAEE 243 (313)
T ss_dssp TTS-EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHHHHHHHHHC
T ss_pred cCCeEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHHHHHHHHHH
Confidence 1 11 12222111 1111111221 223555555554444 3 6789999999999999999888
Q ss_pred cCCCC---ceeecccccccccchhhhchhhHHHhcCCeEEEeccccc
Q 018137 201 LDLVG---PIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 201 ~~~~~---~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
.++.+ -...|.-|.+- .++-....+.|..|..|.|++.
T Consensus 244 ~~~~~~~~~~efq~L~Gm~------d~l~~~L~~~g~~v~~YvP~G~ 284 (313)
T PF01619_consen 244 LGIPPNDDRVEFQQLYGMA------DDLSRALAQAGYRVRKYVPYGP 284 (313)
T ss_dssp TT-GG--GGEEEEEETTSS------HHHHHHHHHHTSEEEEEEEESE
T ss_pred cCCCcccccEEeehhccCC------HHHHHHHHhCCCCEEEEEecCC
Confidence 77432 12334444332 2344556678899999999883
No 242
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=22.12 E-value=6.1e+02 Score=25.92 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCCCccceEEecCC---CCCCCHHHHHHHHHHHHHcCceeeec
Q 018137 130 KHIVEGTKASLKRLDMDYVDVIYCHRP---DTSTPIEETVRAMNYVIDKGWAFYWG 182 (360)
Q Consensus 130 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p---~~~~~~~~~~~al~~L~~~G~ir~iG 182 (360)
+...+-|+..++..+-.+.+ -|-. .....+.+..+-+-+|+++|+||.+.
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~ 412 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVV 412 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEE
Confidence 56677778888877766666 2211 11223456677888999999999984
No 243
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=22.04 E-value=6.3e+02 Score=23.26 Aligned_cols=111 Identities=13% Similarity=0.128 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCC---CCHHHHHHHHHHHHH--cCceee-eccCCCCHHHHHHHHHHH
Q 018137 125 KGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS---TPIEETVRAMNYVID--KGWAFY-WGTSEWSAQQITEAWGIA 198 (360)
Q Consensus 125 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~---~~~~~~~~al~~L~~--~G~ir~-iGvs~~~~~~l~~~~~~~ 198 (360)
...+.+.+++-++..++ -| +|-+++-.-.-+ ...+|-.+.++..++ .|++.- .|++..+..+..++.+.+
T Consensus 16 g~iD~~~l~~lv~~~~~-~G---v~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A 91 (294)
T TIGR02313 16 GDIDEEALRELIEFQIE-GG---SHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFA 91 (294)
T ss_pred CCcCHHHHHHHHHHHHH-cC---CCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHH
Confidence 34777888887777775 35 556666543222 244565555555543 566544 588888877777777777
Q ss_pred hhcCCCCceeeccccc-ccccchhhhchhhHHHhc-CCeEEEec
Q 018137 199 ERLDLVGPIVEQPEYN-MLSRHKVEAEYLPLYSNY-GIGLTTWS 240 (360)
Q Consensus 199 ~~~~~~~~~~~q~~~n-~~~~~~~~~~~l~~~~~~-gi~vi~~~ 240 (360)
...|. +-.++..+|. ..++.....-+...|+.- ++.++.|.
T Consensus 92 ~~~Ga-d~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn 134 (294)
T TIGR02313 92 EEAGA-DAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYN 134 (294)
T ss_pred HHcCC-CEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 77773 3444444443 222221111123345566 79999886
No 244
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.00 E-value=6.9e+02 Score=23.72 Aligned_cols=92 Identities=13% Similarity=0.028 Sum_probs=58.9
Q ss_pred eEEecCCCCC-----------CCHHHHHHHHHHHHHcCc----eeeeccC--CCCHHHHHHHHHHHhhcCCCCceeeccc
Q 018137 150 VIYCHRPDTS-----------TPIEETVRAMNYVIDKGW----AFYWGTS--EWSAQQITEAWGIAERLDLVGPIVEQPE 212 (360)
Q Consensus 150 l~~lH~p~~~-----------~~~~~~~~al~~L~~~G~----ir~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~~q~~ 212 (360)
.+-||.+++. .+++++++++.+..++.. |+++=+. |.+.+++.++.++++.. ...++-++
T Consensus 206 aiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~---~~~VnLIP 282 (343)
T PRK14468 206 ALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGL---VSHVNLIP 282 (343)
T ss_pred EEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcC---CcEEEEEc
Confidence 5667887653 256788899887766543 3344443 67777888888887753 34567778
Q ss_pred ccccccchh---h----hchhhHHHhcCCeEEEeccccc
Q 018137 213 YNMLSRHKV---E----AEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 213 ~n~~~~~~~---~----~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
||+.....+ . ..+.+..+++|+.+......+.
T Consensus 283 ynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~ 321 (343)
T PRK14468 283 FNPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGR 321 (343)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 887642211 1 1344566778999988766554
No 245
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=21.95 E-value=6.7e+02 Score=23.58 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCCCh------HHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYANGR------AEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHI 132 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~------sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i 132 (360)
.++.++..++++.+.+.|+..|.- .| |+ -.+++ +.+++.+ -.+.|.|-.. ..+.+.+
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~---~G-GEPll~~~~~~ii-~~~~~~g---~~~~l~TNG~---------ll~~e~~ 98 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHF---SG-GEPLARPDLVELV-AHARRLG---LYTNLITSGV---------GLTEARL 98 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEE---eC-ccccccccHHHHH-HHHHHcC---CeEEEEeCCc---------cCCHHHH
Confidence 567888999999999999877752 23 31 12333 2233322 1345555531 1333322
Q ss_pred HHHHHHHHHhhCCCccceEEecCCCCC---------CCHHHHHHHHHHHHHcCcee--eeccCCCCHHHHHHHHHHHhhc
Q 018137 133 VEGTKASLKRLDMDYVDVIYCHRPDTS---------TPIEETVRAMNYVIDKGWAF--YWGTSEWSAQQITEAWGIAERL 201 (360)
Q Consensus 133 ~~~~~~sL~~Lg~d~iDl~~lH~p~~~---------~~~~~~~~al~~L~~~G~ir--~iGvs~~~~~~l~~~~~~~~~~ 201 (360)
+.|...|.+.|. +-|+.+++. ..++.++++++.|++.|.-- .+.++..+..++.++.+++.+.
T Consensus 99 -----~~L~~~g~~~v~-iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~l 172 (358)
T TIGR02109 99 -----DALADAGLDHVQ-LSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIEL 172 (358)
T ss_pred -----HHHHhCCCCEEE-EeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHc
Confidence 334455655443 234444321 13566778888888877421 2345677888888888888777
Q ss_pred CC
Q 018137 202 DL 203 (360)
Q Consensus 202 ~~ 203 (360)
|.
T Consensus 173 g~ 174 (358)
T TIGR02109 173 GA 174 (358)
T ss_pred CC
Confidence 64
No 246
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=21.90 E-value=8.3e+02 Score=24.64 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=52.8
Q ss_pred HHHHHHHHHhc--CCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCH-HHHHHH
Q 018137 92 EEIMGQAIREL--GWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPI-EETVRA 168 (360)
Q Consensus 92 E~~lG~al~~~--~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~-~~~~~a 168 (360)
|+.|-+++.+. ..+.+-++|.|-+ ..+-|-..++...+.++. .++++.++.|...... ...-.+
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC------------~seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~~a 136 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSC------------TAELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAADET 136 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCc------------HHHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHHHHH
Confidence 55555666532 1223335666665 233344445555555554 3679999998765542 112222
Q ss_pred HHHHH---------------HcCceeeeccCC---CCHHHHHHHHHHHhhcC
Q 018137 169 MNYVI---------------DKGWAFYWGTSE---WSAQQITEAWGIAERLD 202 (360)
Q Consensus 169 l~~L~---------------~~G~ir~iGvs~---~~~~~l~~~~~~~~~~~ 202 (360)
++.++ ..+.|.-||.++ +.+.++.++.+.....|
T Consensus 137 l~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~G 188 (519)
T PRK02910 137 FYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLG 188 (519)
T ss_pred HHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcC
Confidence 22222 234588889764 24566667666666665
No 247
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=21.88 E-value=77 Score=24.07 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCcEEeeCCCCHHHHHHHHhhccc-----CCCCCHHHHHHHHHHHc
Q 018137 281 NKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDV-----IPLLTPSVMDKIEAAVL 350 (360)
Q Consensus 281 ~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~vi~G~~~~~~l~en~~a~~~-----~~~L~~~e~~~l~~~~~ 350 (360)
..++++..+|+..|..+..-..+ .+.+| -....+|..+.+++.+.++..+. ..+||+.+..-|++.+.
T Consensus 8 ~~l~El~~L~~t~g~~vv~~~~q-~~~~~-~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 8 ESLEELEELAETAGYEVVGTVVQ-KRRKP-DPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEe-cCCCC-CcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 34578999999888765532211 12233 34689999999999998876542 24899999999999875
No 248
>PRK13753 dihydropteroate synthase; Provisional
Probab=21.71 E-value=6.4e+02 Score=23.25 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEe-cCCCCC-CCH-HH---HHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhh
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYC-HRPDTS-TPI-EE---TVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAER 200 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-H~p~~~-~~~-~~---~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 200 (360)
++.+.+.+..++-+ .-|.|-||+=-- .+|... .+. +| +...++.+++.+. -|.|-++.++.++++++..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aG-- 96 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRG-- 96 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcC--
Confidence 45666666666544 457888888543 345432 222 23 4478888887753 4788899999998888652
Q ss_pred cCCCCceeecccccccccchhhhchhhHHHhcCCeEEEecccc
Q 018137 201 LDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLA 243 (360)
Q Consensus 201 ~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~vi~~~pl~ 243 (360)
.++ +|-+ +-++ ..++++.+.+++++++.+...+
T Consensus 97 ---adi-INDV--sg~~----d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 97 ---VGY-LNDI--QGFP----DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred ---CCE-EEeC--CCCC----chHHHHHHHHcCCCEEEEecCC
Confidence 222 2222 2222 2356788889999998877644
No 249
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=21.65 E-value=7.4e+02 Score=23.98 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhc---CCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHH
Q 018137 62 VKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIREL---GWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKA 138 (360)
Q Consensus 62 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~---~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~ 138 (360)
..+..+.|+.++++|+- .+.|+...=-..|-.|.+++ .++.+.++.+.-+ ...+..
T Consensus 40 pp~i~~Al~~rvdhGvf----GY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~V-----------------Vpgi~~ 98 (388)
T COG1168 40 PPEIIEALRERVDHGVF----GYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGV-----------------VPGISL 98 (388)
T ss_pred CHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcc-----------------hHhHHH
Confidence 36788899999999974 33344322224555666643 2334444443333 222333
Q ss_pred HHHhhCCCccceEEecCCCCC----------------------CCHHHHHHHHHHHHHcCceeeeccC--------CCCH
Q 018137 139 SLKRLDMDYVDVIYCHRPDTS----------------------TPIEETVRAMNYVIDKGWAFYWGTS--------EWSA 188 (360)
Q Consensus 139 sL~~Lg~d~iDl~~lH~p~~~----------------------~~~~~~~~al~~L~~~G~ir~iGvs--------~~~~ 188 (360)
.++.| |+-=|-+.++.|-.. ..+.=-++.||+...++.++.+=+| .|+.
T Consensus 99 ~I~~~-T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~ 177 (388)
T COG1168 99 AIRAL-TKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTK 177 (388)
T ss_pred HHHHh-CcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccH
Confidence 33333 233455555554221 0010025667777777765555444 2445
Q ss_pred HHHHHHHHHHhhcC
Q 018137 189 QQITEAWGIAERLD 202 (360)
Q Consensus 189 ~~l~~~~~~~~~~~ 202 (360)
+.|.++.+.|..||
T Consensus 178 eeL~~i~elc~kh~ 191 (388)
T COG1168 178 EELRKIAELCLRHG 191 (388)
T ss_pred HHHHHHHHHHHHcC
Confidence 55666666666665
No 250
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=21.50 E-value=6.1e+02 Score=22.89 Aligned_cols=122 Identities=12% Similarity=0.035 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCCChHHHHHH----HHHHhcCCCCCcEEEEeccccCC-CCCCCCCCCHHHHHHHHH
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMG----QAIRELGWKRSDIVVSTKIFWGG-QGPNDKGLSRKHIVEGTK 137 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG----~al~~~~~~R~~v~i~tK~~~~~-~~~~~~~~~~~~i~~~~~ 137 (360)
+++.+.+-.++..|.+.| .+|.|.|-.+-- +.....+.+++.+.-..-.+... ..+. ... ++-...-.
T Consensus 36 ~~av~~~~~~l~~ggrl~----~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~--~~~-edd~~~~~ 108 (257)
T cd05007 36 ARAVDAAAERLRAGGRLI----YVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAV--EGA-EDDEEAGA 108 (257)
T ss_pred HHHHHHHHHHHHcCCEEE----EEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhc--ccc-CChHHHHH
Confidence 344555666778888877 568888865442 22223333444333222221000 0000 000 11111223
Q ss_pred HHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHH
Q 018137 138 ASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEA 194 (360)
Q Consensus 138 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~ 194 (360)
+.+...+...=|++..-.-.-. ..+++++++.+++.| +.-|++++.....+.+.
T Consensus 109 ~~l~a~~l~~~DvvI~IS~SG~--T~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~ 162 (257)
T cd05007 109 ADLQAINLTERDVVIGIAASGR--TPYVLGALRYARARG-ALTIGIACNPGSPLLQL 162 (257)
T ss_pred HHHHHcCCCCCCEEEEEeCCCC--CHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 3444455566788887765443 356899999999998 67899987776655553
No 251
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.48 E-value=7.1e+02 Score=23.69 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=59.3
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHc-Cc---eeeecc--CCCCHHHHHHHHHHHhhcCCCCceeecccc
Q 018137 151 IYCHRPDTS-----------TPIEETVRAMNYVIDK-GW---AFYWGT--SEWSAQQITEAWGIAERLDLVGPIVEQPEY 213 (360)
Q Consensus 151 ~~lH~p~~~-----------~~~~~~~~al~~L~~~-G~---ir~iGv--s~~~~~~l~~~~~~~~~~~~~~~~~~q~~~ 213 (360)
+.||.|+.. .+++++++++.+..++ |. ++++=+ -|.+.+.++++.++++..+ ..++-++|
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~---~kVnLIPy 292 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLD---CKINVIPL 292 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCC---CcEEEEcc
Confidence 678988653 3568888999877644 22 334433 3677888888888887654 45677788
Q ss_pred ccccc--c-hh---hhchhhHHHhcCCeEEEeccccc
Q 018137 214 NMLSR--H-KV---EAEYLPLYSNYGIGLTTWSPLAS 244 (360)
Q Consensus 214 n~~~~--~-~~---~~~~l~~~~~~gi~vi~~~pl~~ 244 (360)
|.-.. . +. -..+.+.++++||.+......+.
T Consensus 293 N~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 293 NTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 76321 0 10 12355667888999988877664
No 252
>TIGR00035 asp_race aspartate racemase.
Probab=21.47 E-value=3.9e+02 Score=23.52 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCC------------CCHHHHHHHHHHHHHcCceeeeccCCCCHHH
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTS------------TPIEETVRAMNYVIDKGWAFYWGTSEWSAQQ 190 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~------------~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~ 190 (360)
.+.+..++=++.+-.+.+.+|++.+.+++|+.. .....+.+..+.|.+.| +..|.++..+...
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 455667776777777889999999999998542 12234566777776655 6888877665544
No 253
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=21.43 E-value=6.2e+02 Score=22.95 Aligned_cols=108 Identities=11% Similarity=0.073 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEecCCC-C--CCCHHHHHHHHHHHHHc--C-ceeeeccCCCCHHHHHHHHHHH
Q 018137 125 KGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPD-T--STPIEETVRAMNYVIDK--G-WAFYWGTSEWSAQQITEAWGIA 198 (360)
Q Consensus 125 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~-~--~~~~~~~~~al~~L~~~--G-~ir~iGvs~~~~~~l~~~~~~~ 198 (360)
.....+.+++.++.-++ -| +|-+++-.-. + ....+|-.+.++..++. | ..-..|++..+..+..+..+.+
T Consensus 16 g~iD~~~~~~~i~~l~~-~G---v~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a 91 (284)
T cd00950 16 GSVDFDALERLIEFQIE-NG---TDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRA 91 (284)
T ss_pred CCcCHHHHHHHHHHHHH-cC---CCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHH
Confidence 35777778777776554 45 5666554332 2 12334444444433332 3 3455899988888888888888
Q ss_pred hhcCCCCceeeccccc-ccccchhhhchhh----HHHhcCCeEEEecc
Q 018137 199 ERLDLVGPIVEQPEYN-MLSRHKVEAEYLP----LYSNYGIGLTTWSP 241 (360)
Q Consensus 199 ~~~~~~~~~~~q~~~n-~~~~~~~~~~~l~----~~~~~gi~vi~~~p 241 (360)
.+.|. +-.++..++. ... +.++++ .|+..++.++.|..
T Consensus 92 ~~~G~-d~v~~~~P~~~~~~----~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 92 EKAGA-DAALVVTPYYNKPS----QEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred HHcCC-CEEEEcccccCCCC----HHHHHHHHHHHHhcCCCCEEEEEC
Confidence 88773 3334444432 222 234444 44556899998863
No 254
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=21.30 E-value=6.5e+02 Score=23.13 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHhhCC--------------------------CccceEEecCCCCCCC---HHHHHHHHHHHHHcC
Q 018137 126 GLSRKHIVEGTKASLKRLDM--------------------------DYVDVIYCHRPDTSTP---IEETVRAMNYVIDKG 176 (360)
Q Consensus 126 ~~~~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lH~p~~~~~---~~~~~~al~~L~~~G 176 (360)
++....++..++.-|+|+++ -..|++.|..|.+..+ .+-+-++.-+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 47788899999999999873 2345555555544322 233457788899999
Q ss_pred ceeeeccCCCCHHHHHHHHHH
Q 018137 177 WAFYWGTSEWSAQQITEAWGI 197 (360)
Q Consensus 177 ~ir~iGvs~~~~~~l~~~~~~ 197 (360)
. .|=+|+|..++++++++.
T Consensus 181 a--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred C--EEEEecchHHHHHHHhhh
Confidence 7 567899999998887764
No 255
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=21.24 E-value=1.8e+02 Score=24.83 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeecc
Q 018137 135 GTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGT 183 (360)
Q Consensus 135 ~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGv 183 (360)
+++++|..- .-++++++.......-.+-++.|..|..+|++|++-+
T Consensus 68 ~f~~~L~e~---sn~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nL 113 (173)
T PF10171_consen 68 SFEDALLEA---SNDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNL 113 (173)
T ss_pred HHHHHHHHH---hCceeccChhhcCchHHHHHHHHHHHhcCCceEEeee
Confidence 445555444 3677888755444444667899999999999999743
No 256
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=21.19 E-value=6.3e+02 Score=22.99 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHH--cCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHH
Q 018137 59 QLDVKEAKSLLQCCRD--HGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGT 136 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~--~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~ 136 (360)
..+.++..++++.|.+ .|+.-+-..+.| -....+.|+..+ -.++-|+|=++++ . ...+.+.-....
T Consensus 22 ~~T~~~I~~lc~eA~~~~~~faaVcV~P~~-----v~~a~~~L~~~~--~~~vkv~tVigFP----~-G~~~t~~K~~Ea 89 (257)
T PRK05283 22 DDTDEKVIALCHQAKTPVGNTAAICIYPRF-----IPIARKTLREQG--TPEIRIATVTNFP----H-GNDDIDIALAET 89 (257)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEECHHH-----HHHHHHHhcccC--CCCCeEEEEecCC----C-CCCcHHHHHHHH
Confidence 4678999999999999 588888877777 566666665311 1147788878652 2 123344444555
Q ss_pred HHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHH
Q 018137 137 KASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVI 173 (360)
Q Consensus 137 ~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~ 173 (360)
+..++ .|.|-||+++=-..--...++.+.+-+.+++
T Consensus 90 ~~Ai~-~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~ 125 (257)
T PRK05283 90 RAAIA-YGADEVDVVFPYRALMAGNEQVGFELVKACK 125 (257)
T ss_pred HHHHH-cCCCEEeeeccHHHHhCCcHHHHHHHHHHHH
Confidence 56665 4999999976322212233344444444444
No 257
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=21.08 E-value=6e+02 Score=22.67 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEecccCCCC-ChHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHH
Q 018137 59 QLDVKEAKSLLQCCRDHGVNFFDNAEVYAN-GRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTK 137 (360)
Q Consensus 59 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~ 137 (360)
.+++++.....+.+.++|..|+=|+..+.. |...+-+--..+..+ . -+--|..-| -.+.++....++
T Consensus 136 ~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~vg-~----~vgvKaSGG-------Irt~eda~~~i~ 203 (228)
T COG0274 136 LLTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETVG-G----RVGVKASGG-------IRTAEDAKAMIE 203 (228)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhc-c----CceeeccCC-------cCCHHHHHHHHH
Confidence 366788899999999999999999995543 444433322222111 1 233343211 268889999999
Q ss_pred HHHHhhCCCc
Q 018137 138 ASLKRLDMDY 147 (360)
Q Consensus 138 ~sL~~Lg~d~ 147 (360)
.-.-|+|+..
T Consensus 204 aga~RiGtSs 213 (228)
T COG0274 204 AGATRIGTSS 213 (228)
T ss_pred HhHHHhcccc
Confidence 9999999864
No 258
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=21.01 E-value=6.7e+02 Score=23.22 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEecccCCCC-------Ch----HHHHHHHHHH---h-c-CCCCCcEEEEeccccCCC--CC
Q 018137 61 DVKEAKSLLQCCRDHGVNFFDNAEVYAN-------GR----AEEIMGQAIR---E-L-GWKRSDIVVSTKIFWGGQ--GP 122 (360)
Q Consensus 61 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-------G~----sE~~lG~al~---~-~-~~~R~~v~i~tK~~~~~~--~~ 122 (360)
.++...++-+..+++|-+.|.|.....+ |. .+++.-++++ + . ...+.+++|+.-++.... .+
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~ 123 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLAD 123 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCC
Confidence 3455677778889999999988766543 32 2444444443 1 0 011225788888753210 11
Q ss_pred -----CCCCCCHHHHHHHHHHHHHhhCCCccceEEecCCCCCCCHHHHHHHHHHHHHc--CceeeeccCCC------CHH
Q 018137 123 -----NDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDK--GWAFYWGTSEW------SAQ 189 (360)
Q Consensus 123 -----~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~--G~ir~iGvs~~------~~~ 189 (360)
...+.+.+.+++...+..+.|--..+|++++--. ..+.|+..+++.+++. ++--.+.++.. +..
T Consensus 124 ~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~---~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~ 200 (304)
T PRK09485 124 GSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETI---PNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGT 200 (304)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecc---CCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCC
Confidence 1123578999999999999886567999999743 3456666666666644 54433433311 112
Q ss_pred HHHHHHHHHhhcCCCCceeecccccccccchhhhchhhHHHh-cCCeEEEe
Q 018137 190 QITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSN-YGIGLTTW 239 (360)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~-~gi~vi~~ 239 (360)
.+++++...... ..++++-+++. .+.. ...+++.... .+..+++|
T Consensus 201 ~~~~~~~~l~~~--~~~~~iGiNC~--~p~~-~~~~l~~~~~~~~~pl~~~ 246 (304)
T PRK09485 201 PLAEAAALLAAS--PQVVAVGVNCT--APEL-VTAAIAALRAVTDKPLVVY 246 (304)
T ss_pred CHHHHHHHHhcC--CCceEEEecCC--CHHH-HHHHHHHHHhccCCcEEEE
Confidence 355565554332 22556655554 3332 2334444433 24455544
No 259
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=20.89 E-value=5.3e+02 Score=23.71 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHH-------HhhCCCccceEEecCCC-----
Q 018137 90 RAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASL-------KRLDMDYVDVIYCHRPD----- 157 (360)
Q Consensus 90 ~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL-------~~Lg~d~iDl~~lH~p~----- 157 (360)
...+.+.+|-+.-| -.+++.+|..|... ....+.++.++..+..+ +...+.-.-++=+|-.+
T Consensus 20 g~~ea~~~F~rAGG---t~~il~nlps~~~g---~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~ 93 (285)
T COG1831 20 GALEAARRFHRAGG---THLILVNLPSWSYG---IAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLA 93 (285)
T ss_pred cHHHHHHHHHHcCC---cEEEEeeccccccc---CCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHHHHHH
Confidence 35777777777532 35777788754321 11133444444444444 33443323333334210
Q ss_pred -----CCCC---HHHHHHHHHHHHHcCceeeeccCCCCH------------HHHHHHHHHHhhcCCCCceeecccccccc
Q 018137 158 -----TSTP---IEETVRAMNYVIDKGWAFYWGTSEWSA------------QQITEAWGIAERLDLVGPIVEQPEYNMLS 217 (360)
Q Consensus 158 -----~~~~---~~~~~~al~~L~~~G~ir~iGvs~~~~------------~~l~~~~~~~~~~~~~~~~~~q~~~n~~~ 217 (360)
+... +...++....|+++|++-.||=+.++. +.+..+++.+++.+ +. +|++--=.+
T Consensus 94 e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvd---c~-vqLHtes~~ 169 (285)
T COG1831 94 EAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVD---CA-VQLHTESLD 169 (285)
T ss_pred HhccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC---Cc-EEEecCCCC
Confidence 0111 223456667788999988887553332 12566777776643 33 344322233
Q ss_pred cchhhhchhhHHHhcCC
Q 018137 218 RHKVEAEYLPLYSNYGI 234 (360)
Q Consensus 218 ~~~~~~~~l~~~~~~gi 234 (360)
... -.++-.++++.|+
T Consensus 170 ~~~-~~~i~~~ak~~G~ 185 (285)
T COG1831 170 EET-YEEIAEMAKEAGI 185 (285)
T ss_pred hHH-HHHHHHHHHHhCC
Confidence 222 2356778888886
No 260
>COG0218 Predicted GTPase [General function prediction only]
Probab=20.78 E-value=5.7e+02 Score=22.32 Aligned_cols=113 Identities=18% Similarity=0.065 Sum_probs=71.8
Q ss_pred cccccccccCCCCCHHHHHHHHHHHHHc------CCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEeccccCCCC
Q 018137 48 LSYGAWVSFGNQLDVKEAKSLLQCCRDH------GVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQG 121 (360)
Q Consensus 48 lglG~~~~~~~~~~~~~~~~~l~~A~~~------Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~~~~~ 121 (360)
-|||-+. .. ..-.+....++...++. .+-.+|.-..- -..+..+=+||...+ ..=+++.||.-
T Consensus 78 PGYGyAk-v~-k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~~~--i~~~vv~tK~D----- 146 (200)
T COG0218 78 PGYGYAK-VP-KEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLELG--IPVIVVLTKAD----- 146 (200)
T ss_pred CCccccc-CC-HHHHHHHHHHHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHHcC--CCeEEEEEccc-----
Confidence 4666652 11 11234455666555543 55677753322 344677888998865 45688999982
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCccce--EEecCCCCCCCHHHHHHHHHHHHHc
Q 018137 122 PNDKGLSRKHIVEGTKASLKRLDMDYVDV--IYCHRPDTSTPIEETVRAMNYVIDK 175 (360)
Q Consensus 122 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl--~~lH~p~~~~~~~~~~~al~~L~~~ 175 (360)
........+.+....+.|+.+..|- +.+........+++++..+.+....
T Consensus 147 ----Ki~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 147 ----KLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ----cCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2566677788888999998887776 5555555555688888887766543
No 261
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=20.77 E-value=4.7e+02 Score=23.89 Aligned_cols=17 Identities=6% Similarity=0.046 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCceeee
Q 018137 165 TVRAMNYVIDKGWAFYW 181 (360)
Q Consensus 165 ~~~al~~L~~~G~ir~i 181 (360)
.|-+|+++++.||.--+
T Consensus 151 ~wpTL~em~~~GkrViv 167 (267)
T cd08590 151 NWPTKEDMLNSGKQVVL 167 (267)
T ss_pred CCCCHHHHHhCCCEEEE
Confidence 47889999999985544
No 262
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=20.77 E-value=5.4e+02 Score=23.86 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCeEecccCCCCChHHHHHHH----HHHhcCCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 018137 66 KSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQ----AIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLK 141 (360)
Q Consensus 66 ~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~----al~~~~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 141 (360)
.+.+-.++..|-+.| .+|.|.|-.+--. .+-..+.+++.+....-.+... ....--..++-.....+.|+
T Consensus 52 v~~~~~~l~~ggrI~----~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a--~~~a~e~~ed~~~~~~~~l~ 125 (299)
T PRK05441 52 VDAAAAALRQGGRLI----YIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKA--LTKAVEGAEDDAELGAADLK 125 (299)
T ss_pred HHHHHHHHHCCCEEE----EEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHH--HHhcccccCChHHHHHHHHH
Confidence 344445566787765 5788887653312 2223344455444333221100 00000011222233444555
Q ss_pred hhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHH
Q 018137 142 RLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITE 193 (360)
Q Consensus 142 ~Lg~d~iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~ 193 (360)
..+...=|++..-...-. ..+++++++.+++.| ++-|++++.....+.+
T Consensus 126 ~~~l~~~DvvI~IS~SG~--T~~vi~al~~Ak~~G-a~tI~IT~~~~s~La~ 174 (299)
T PRK05441 126 AINLTAKDVVVGIAASGR--TPYVIGALEYARERG-ALTIGISCNPGSPLSK 174 (299)
T ss_pred hcCCCCCCEEEEEeCCCC--CHHHHHHHHHHHHCC-CeEEEEECCCCChhhH
Confidence 665666788888754333 356899999999998 5778988776665544
No 263
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=20.56 E-value=2.5e+02 Score=20.53 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 018137 277 DDVLNKVNRLKPIADELGVPLAQLAIAWCA 306 (360)
Q Consensus 277 ~~~~~~~~~l~~la~~~~~s~~q~al~~~l 306 (360)
....+.+.+|.++|++.|++..++|. |+|
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~-YAL 76 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCV-YAL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHH-HHH
Confidence 45666788999999999999999884 444
No 264
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=20.55 E-value=47 Score=22.21 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.0
Q ss_pred CceeecCCCCcccCccccccc
Q 018137 33 MQYKHLGRSGLRVSQLSYGAW 53 (360)
Q Consensus 33 m~~r~lg~tg~~vs~lglG~~ 53 (360)
-..+.|+.+|++||.+-+|++
T Consensus 15 s~~~~l~dtglrvpv~KmGtg 35 (61)
T PF15221_consen 15 SLGRALRDTGLRVPVIKMGTG 35 (61)
T ss_pred cccccccccccCCceeeecch
Confidence 446788999999999999987
No 265
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=20.53 E-value=8.2e+02 Score=26.83 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=61.5
Q ss_pred cCCCCChHHHHHHHHHHhc--CCCCCcEEEEeccccCCCCCCCCCCCHHHHHHHHHHHHHhh-CCCccceEEecCCCCCC
Q 018137 84 EVYANGRAEEIMGQAIREL--GWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRL-DMDYVDVIYCHRPDTST 160 (360)
Q Consensus 84 ~~Yg~G~sE~~lG~al~~~--~~~R~~v~i~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L-g~d~iDl~~lH~p~~~~ 160 (360)
-+||. |+-|-++|+.. .++.+=++|.|-+.. ..--|+|..-+++.-++. ...-+.++.++.|+...
T Consensus 551 ~VfGG---~~~L~~~I~~~~~~~~p~~I~V~tTc~~--------eiIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~G 619 (917)
T PRK14477 551 AIFGG---WENLKQGILRVIEKFKPKVIGVMTTGLT--------ETMGDDVRSAIVQFREEHPELDDVPVVWASTPDYCG 619 (917)
T ss_pred eEECc---HHHHHHHHHHHHHhcCCCEEEEECCchH--------hhhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCcc
Confidence 46774 55655655531 123455777777632 122344444444333221 11237899999998876
Q ss_pred CHHH----HHHHHH-HHH-----HcCceeeeccCCCCHHHHHHHHHHHhhcCC
Q 018137 161 PIEE----TVRAMN-YVI-----DKGWAFYWGTSEWSAQQITEAWGIAERLDL 203 (360)
Q Consensus 161 ~~~~----~~~al~-~L~-----~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 203 (360)
...+ +++++- .+. ..++|.-||-++..+.++.++.+.....|+
T Consensus 620 s~~~G~~~a~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl 672 (917)
T PRK14477 620 SLQEGYAAAVEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGL 672 (917)
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCC
Confidence 5432 333332 222 346788888766666777777777777764
No 266
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.47 E-value=4.6e+02 Score=23.58 Aligned_cols=87 Identities=13% Similarity=0.005 Sum_probs=50.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHHHHcCceeeeccCCCCHHHHHHHHHHHhhcCCCCceeecccccccccchhhhchhh
Q 018137 148 VDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNMLSRHKVEAEYLP 227 (360)
Q Consensus 148 iDl~~lH~p~~~~~~~~~~~al~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~ 227 (360)
.++.++-.|-+. +-++.+.+|. .+.=-..|=|-++...+.++++. -..+++|+.....---.....+..
T Consensus 153 ~~i~~iEqP~~~----~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~------~~~d~v~~k~~~~GGit~~~~i~~ 221 (263)
T cd03320 153 GRIEYIEQPLPP----DDLAELRRLA-AGVPIALDESLRRLDDPLALAAA------GALGALVLKPALLGGPRALLELAE 221 (263)
T ss_pred cCCceEECCCCh----HHHHHHHHhh-cCCCeeeCCccccccCHHHHHhc------CCCCEEEECchhcCCHHHHHHHHH
Confidence 456667666542 2345566665 33334556666666666666553 125666666553321111246788
Q ss_pred HHHhcCCeEEEecccccc
Q 018137 228 LYSNYGIGLTTWSPLASG 245 (360)
Q Consensus 228 ~~~~~gi~vi~~~pl~~G 245 (360)
.|+.+|+.++..+-+.++
T Consensus 222 ~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 222 EARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHcCCCEEEEcchhhH
Confidence 999999999887655544
No 267
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=20.37 E-value=6.8e+02 Score=23.05 Aligned_cols=45 Identities=7% Similarity=0.208 Sum_probs=32.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCCeEecccCCCCChHH-HHHHHHHH
Q 018137 55 SFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAE-EIMGQAIR 100 (360)
Q Consensus 55 ~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE-~~lG~al~ 100 (360)
..+..++.++-.++++.-.+.||..|+.. +-..+..| +.+.+..+
T Consensus 15 ~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~g-fP~~~~~e~e~~~~i~~ 60 (284)
T cd07942 15 ALAEPMSVEQKLRFFKLLVKIGFKEIEVG-FPSASQTDFDFVRELIE 60 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEe-CCCCCHHHHHHHHHHHH
Confidence 34445677899999999999999999987 44446667 44444433
No 268
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=20.11 E-value=2.7e+02 Score=26.51 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCC----HHHHHHHHHHcCCCCcEEeeCCC--CHHHHHHHHhhcccC------CCCCHHHHHHHHHHHcc
Q 018137 284 NRLKPIADELGVP----LAQLAIAWCASNPNVSSVITGAT--KESQIQENMKAIDVI------PLLTPSVMDKIEAAVLS 351 (360)
Q Consensus 284 ~~l~~la~~~~~s----~~q~al~~~l~~~~v~~vi~G~~--~~~~l~en~~a~~~~------~~L~~~e~~~l~~~~~~ 351 (360)
++.+++|+++|+. ..++ +..+.+.+|.+.+. +..|.+-..++++.+ +||..+|.++|-++.+.
T Consensus 39 erA~~~A~~~gi~~y~~~eel-----l~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 39 ERSRALAHRLGVPLYCEVEEL-----PDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred HHHHHHHHHhCCCccCCHHHH-----hcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 3667788888863 3333 25566767776553 345656555555543 59998888888877765
Q ss_pred C
Q 018137 352 K 352 (360)
Q Consensus 352 ~ 352 (360)
.
T Consensus 114 ~ 114 (343)
T TIGR01761 114 Q 114 (343)
T ss_pred c
Confidence 3
No 269
>PRK01215 competence damage-inducible protein A; Provisional
Probab=20.10 E-value=2.7e+02 Score=25.37 Aligned_cols=50 Identities=26% Similarity=0.078 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCCeEecccCCCCChHHHHHHHHHHhcCCCCCcEEEEecccc
Q 018137 63 KEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFW 117 (360)
Q Consensus 63 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~~~R~~v~i~tK~~~ 117 (360)
..+.-+-....+.|++.....-. ++.++.|-++|+..- .+.+++|+| .|.
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~~v---~Dd~~~I~~~l~~a~-~~~DlVItt-GG~ 72 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRITVV---MDDIEEIVSAFREAI-DRADVVVST-GGL 72 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEEEe---CCCHHHHHHHHHHHh-cCCCEEEEe-CCC
Confidence 34444445566789987765544 334777888887642 467899988 444
No 270
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.09 E-value=5.3e+02 Score=21.68 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEecCCCCCC-CHHHHHHHHHHHHHcCc
Q 018137 127 LSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTST-PIEETVRAMNYVIDKGW 177 (360)
Q Consensus 127 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~al~~L~~~G~ 177 (360)
.+++.+.+.+ ++++.- =+++++|..+... ..+.+-..+..|+++|.
T Consensus 136 ~~~~~i~~~~---~~~~~~--g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy 182 (191)
T TIGR02764 136 PGVESIVDRV---VKNTKP--GDIILLHASDSAKQTVKALPTIIKKLKEKGY 182 (191)
T ss_pred CCHHHHHHHH---HhcCCC--CCEEEEeCCCCcHhHHHHHHHHHHHHHHCCC
Confidence 4455554443 444432 3689999533221 12333456666777775
Done!