BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018138
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 164 bits (414), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 97/124 (78%)
Query: 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY 173
R+LH + RVGDL ++I FYT+ LGMKLLR + PE +Y+ AF+GYGPE V+ELTYN+
Sbjct: 2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW 61
Query: 174 GVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 233
GVDKY++GT +GH ++V++ A+ + ++ GG VTRE GPVKGG TVIAF+EDPDGYK
Sbjct: 62 GVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKI 121
Query: 234 ELLE 237
EL+E
Sbjct: 122 ELIE 125
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 72/126 (57%), Gaps = 16/126 (12%)
Query: 245 LCQVMLRVGDLDRAINFYKK----------------YTIAVMGYGPEDKNAVLELTYNHG 288
L MLRVGDL R+I+FY K Y++A +GYGPE + AV+ELTYN G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 289 VTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSV 348
V +Y+ G Y IA+ D+ + E I+ +GG +TRE GP+ G T I DPDG+K
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIE 122
Query: 349 FVDNLD 354
++ D
Sbjct: 123 LIEEKD 128
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 82/124 (66%), Gaps = 5/124 (4%)
Query: 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYN 172
RRMLH + RVGDLD++IKFYTE LGMK+LRK D+PED+YT FLGYGPE S V+ELTYN
Sbjct: 7 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYN 66
Query: 173 YGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYK 232
YGV Y +GH I VEDV + V ++ + E + +AF+ DPDGY
Sbjct: 67 YGVTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYE-----DESGFMAFVVDPDGYY 121
Query: 233 FELL 236
ELL
Sbjct: 122 IELL 125
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 21/117 (17%)
Query: 245 LCQVMLRVGDLDRAINFY----------------KKYTIAVMGYGPEDKNAVLELTYNHG 288
+ M+RVGDLDR+I FY KYT+ +GYGPE + VLELTYN+G
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 289 VTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGW 345
VT Y Y IAIG +DV + ++ I E + + +DPDG+
Sbjct: 69 VTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYEDE-----SGFMAFVVDPDGY 120
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 122/273 (44%), Gaps = 45/273 (16%)
Query: 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-----------RYTNAFLGYGPE 161
RR LH V++VG+ +T +FY + LGMK+LR + E +++ +G+GPE
Sbjct: 26 RRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPE 85
Query: 162 DSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTV 221
D HFV ELTYNYGV Y +G F GI + + K + P+
Sbjct: 86 DDHFVAELTYNYGVGDYKLGNDF--MGITLASSQAVSNARKLE--------WPLTEVAEG 135
Query: 222 IAFIEDPDGYKFELLERG-PTPEPLCQVMLRVGDLDRAINFY------------KKYTIA 268
+ E P GYKF L R P +P+ +V L V DL +++N++ ++ A
Sbjct: 136 VFETEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYENDEEKQRA 195
Query: 269 VMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGP 328
++GY D LEL G ++ G + ++ + +K KI P
Sbjct: 196 LLGYA--DNQCKLELQGVKGGVDHAAAFGRIAFSCPQKELPDLEDLMKRENQKILT---P 250
Query: 329 LPGINT------KITACLDPDGWKSVFVDNLDF 355
L ++T ++ DPDG + FV + F
Sbjct: 251 LVSLDTPGKATVQVVILADPDGHEICFVGDEAF 283
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 30/148 (20%)
Query: 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYG-----PEDS------ 163
+ + R+ D K++ FYT LG+ LL+K D P +++ FL Y P+D
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 164 ----HFVVELTYNYGVDKYDIGT---------GFGHFGIAVEDVAKTVDLVKAKGGKVTR 210
+ELT+N+G + + + GFGH GIAV DV + G K +
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 151
Query: 211 EP--GPVKGGNTVIAFIEDPDGYKFELL 236
+P G +KG +AFI+DPDGY E+L
Sbjct: 152 KPDDGKMKG----LAFIQDPDGYWIEIL 175
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 69/182 (37%), Gaps = 61/182 (33%)
Query: 211 EPGPVKGG---NTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYK---- 263
EP P G T + DPD + L L Q MLR+ D ++++FY
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 264 ------------KYTIAVMGYGPEDKN-----------------AVLELTYNHGVTE--- 291
K+++ + Y EDKN A LELT+N G +
Sbjct: 55 LTLLQKLDFPAMKFSLYFLAY--EDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDET 112
Query: 292 --YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITACLDPD 343
Y GN G+ I I DVY + + G K ++P G + G + DPD
Sbjct: 113 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 168
Query: 344 GW 345
G+
Sbjct: 169 GY 170
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 34/150 (22%)
Query: 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFV-------- 166
+ + RV D K++ FYT LGM L++K D P +++ FL Y ED + +
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 88
Query: 167 ---------VELTYNYGVDKYDIGT---------GFGHFGIAVEDVAKTVDLVKAKGGKV 208
+ELT+N+G + + + GFGH GIAV DV + G K
Sbjct: 89 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 148
Query: 209 TREP--GPVKGGNTVIAFIEDPDGYKFELL 236
++P G +KG +AFI+DPDGY E+L
Sbjct: 149 VKKPDDGKMKG----LAFIQDPDGYWIEIL 174
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 72/190 (37%), Gaps = 62/190 (32%)
Query: 211 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYK---- 263
EP P GG T ++ D D + L L Q MLRV D ++++FY
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFYTRVLG 53
Query: 264 ------------KYTIAVMGYGPEDKN-----------------AVLELTYNHGVTE--- 291
K+++ + Y EDKN A LELT+N G +
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 292 --YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITACLDPD 343
Y GN G+ I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 344 G-WKSVFVDN 352
G W + N
Sbjct: 168 GYWIEILNPN 177
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 34/150 (22%)
Query: 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFV-------- 166
+ + RV D K++ FYT LGM L++K D P +++ FL Y ED + +
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 92
Query: 167 ---------VELTYNYGVDKYDIGT---------GFGHFGIAVEDVAKTVDLVKAKGGKV 208
+ELT+N+G + + + GFGH GIAV DV + G K
Sbjct: 93 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 152
Query: 209 TREP--GPVKGGNTVIAFIEDPDGYKFELL 236
++P G +KG +AFI+DPDGY E+L
Sbjct: 153 VKKPDDGKMKG----LAFIQDPDGYWIEIL 178
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 73/195 (37%), Gaps = 62/195 (31%)
Query: 206 GKVTREPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFY 262
G EP P GG T ++ D D + L L Q MLRV D ++++FY
Sbjct: 1 GSHMAEPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFY 52
Query: 263 K----------------KYTIAVMGYGPEDKN-----------------AVLELTYNHGV 289
K+++ + Y EDKN A LELT+N G
Sbjct: 53 TRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGT 110
Query: 290 TE-----YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITA 338
+ Y GN G+ I I DVY + + G K ++P G + G +
Sbjct: 111 EDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAF 166
Query: 339 CLDPDG-WKSVFVDN 352
DPDG W + N
Sbjct: 167 IQDPDGYWIEILNPN 181
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 34/150 (22%)
Query: 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFV-------- 166
+ + RV D K++ FYT LGM L++K D P +++ FL Y ED + +
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 88
Query: 167 ---------VELTYNYGVDKYDIGT---------GFGHFGIAVEDVAKTVDLVKAKGGKV 208
+ELT+N+G + + + GFGH GIAV DV + G K
Sbjct: 89 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 148
Query: 209 TREP--GPVKGGNTVIAFIEDPDGYKFELL 236
++P G +KG +AFI+DPDGY ++L
Sbjct: 149 VKKPDDGKMKG----LAFIQDPDGYWIQIL 174
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 72/190 (37%), Gaps = 62/190 (32%)
Query: 211 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYK---- 263
EP P GG T ++ D D + L L + MLRV D ++++FY
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQETMLRVKDPKKSLDFYTRVLG 53
Query: 264 ------------KYTIAVMGYGPEDKN-----------------AVLELTYNHGVTE--- 291
K+++ + Y EDKN A LELT+N G +
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 292 --YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITACLDPD 343
Y GN G+ I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 344 G-WKSVFVDN 352
G W + N
Sbjct: 168 GYWIQILNPN 177
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Query: 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY 173
++ H+ V + + FY L +KLL D+P AFL G + L+
Sbjct: 8 KLDHIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEES 67
Query: 174 GVDKY--DIGTGFGHFGIAVEDVAKTVDLVKAKGGK-VTREPGP-VKGGNTVIAFIEDPD 229
+ K+ G G H I V+ + + + VK G + + EP P +G
Sbjct: 68 PIAKFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSAR 127
Query: 230 GYKFELLERGPTPEPL 245
G +E E+ E L
Sbjct: 128 GVLYEFCEKKEQAENL 143
>pdb|4G6X|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
PROTEIN FROM Catenulispora Acidiphila
Length = 155
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 107 WVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP--EDRYTNAFLGYGPEDSH 164
+ +S+ R+ V D K FYT LG L K D+P DR+ P+ +
Sbjct: 19 YFQSNAXRIHLTNVFVDDQAKAESFYTGKLG--FLVKADVPVGADRWLTVVSPEAPDGTQ 76
Query: 165 FVVELTYNYGVDKYD---IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTV 221
++E + + V + + G AV+D+A + + A G + T+E P G V
Sbjct: 77 LLLEPSSHAAVTPFKEALVADGIPAASFAVDDIAAEYERLSALGVRFTQE--PTDXGPVV 134
Query: 222 IAFIEDPDGYKFELLE 237
A ++D G +L +
Sbjct: 135 TAILDDTCGNLIQLXQ 150
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
Query: 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYN 172
+ + HV + T FY E LG ++LR+ PE L G ++ + +
Sbjct: 4 KEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP 63
Query: 173 YGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGN-TVIAFIEDPDGY 231
Y G H VE + + + + +G + EP V F DPDG
Sbjct: 64 -ARPSYPEALGLRHLAFKVEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGL 120
Query: 232 KFELLE 237
EL E
Sbjct: 121 PLELHE 126
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY 173
R+ HV V DL+K FY LG ++ +PE + F+ G +EL +
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTK----MELLHPL 60
Query: 174 GVD-------KYDIGTGFGHFGIAVEDV-AKTVDLVKAKGGKVTRE 211
G+D + + G H I V+++ A +DL K K ++ E
Sbjct: 61 GLDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEE 106
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGP-EDSHFVVELT-YNYG 174
HV V D DK+ +FY LG +++R+ P+ L G E F +LT NY
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDSNYC 67
Query: 175 VDKYDI-----GTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPD 229
I G H VEDV + + A G +V G +AF DPD
Sbjct: 68 APPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYDDYTGKK-MAFFFDPD 126
Query: 230 GYKFELLE 237
G EL E
Sbjct: 127 GLPLELHE 134
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVEL------- 169
HV Y D D+ K+Y E G L + + PE + + + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLN 71
Query: 170 ---TYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVT-REPGPVKGGNTV 221
T + K++ G H V+D+ ++ +G ++ EP GGN +
Sbjct: 72 DESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRI 127
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 158 YGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDL------VKAKGGKVTRE 211
+ PE+ + E G D TGFG G ++EDVA V + VKA GG RE
Sbjct: 130 FSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRE 189
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
Length = 148
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 117 HVVYRVGDLDKTIKFYTECLGMKLLRK-RDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV 175
H+ + V +L+K+I+FY + L KLL K R + ++ E+ +
Sbjct: 8 HICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNVEED-----------I 56
Query: 176 DKYDIGTGFGHFGIAVEDVAKTVDLVKAK--GGKVTREPGPVKGGNTVIA-FIEDPDGYK 232
+ +I + H V + A +D +K V PG + + + DPDG+K
Sbjct: 57 PRNEIKQSYTHXAFTVTNEA--LDHLKEVLIQNDVNILPGRERDERDQRSLYFTDPDGHK 114
Query: 233 FEL 235
FE
Sbjct: 115 FEF 117
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 114 RMLHVVYRVGDLDKTIKFYTECLGM 138
R+ H+V V D+ TI+FY E LG
Sbjct: 23 RIDHLVLTVSDISTTIRFYEEVLGF 47
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 190 AVEDVAKTVDLVKAKGGKVTREP-GPVKGGNTVIA 223
AVEDV K DL+KA G+ +P VK GN V A
Sbjct: 12 AVEDVRKQGDLMKAAAGEFADDPCSSVKRGNMVRA 46
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 114 RMLHVVYRVGDLDKTIKFYTECLG 137
R+ H+V V D+ TI+FY E LG
Sbjct: 23 RIDHLVLTVSDISTTIRFYEEVLG 46
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE 148
HV Y D D+ K+Y E G L + + PE
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPE 43
>pdb|1DOV|A Chain A, Crystal Structure Of The Alpha-Catenin Dimerization Domain
Length = 181
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 189 IAVEDVAKTVDLVKAKGGKVTREP-GPVKGGNTVIA 223
+AVEDV K DL+K+ G+ +P VK GN V A
Sbjct: 11 VAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRA 46
>pdb|2JLN|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
Transporter
pdb|2JLO|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
Transporter, In A Closed Conformation With
Benzylhydantoin
Length = 501
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 250 LRVGDLDRAINFYKKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQ---IAIGTD 306
L + ++ R + + + ++ +G A+ +T +G+T N +A +A+G
Sbjct: 127 LALDEITRLLTGFTNLPLWIVIFG-----AIQVVTTFYGITFIRWMNVFASPVLLAMGVY 181
Query: 307 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKE 358
VY + +S G++ G PG+ + GW +V V D +KE
Sbjct: 182 MVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKE 233
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 267 IAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVY--KTAEAIKLSGGKITR 324
+AV+ PE + ++E + +G+ E N QI I + V K E IK GG+ +
Sbjct: 132 VAVLRMTPEQVDEIIEKSSPYGIVEGANYNSPGQIVISGELVALEKAMEFIKEVGGRAIK 191
Query: 325 EPGPLP 330
P P
Sbjct: 192 LPVSAP 197
>pdb|1DOW|A Chain A, Crystal Structure Of A Chimera Of Beta-Catenin And Alpha-
Catenin
Length = 205
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 189 IAVEDVAKTVDLVKAKGGKVTREP-GPVKGGNTVIA 223
+AVEDV K DL K+ G+ +P VK GN V A
Sbjct: 36 VAVEDVRKQGDLXKSAAGEFADDPCSSVKRGNXVRA 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,564,039
Number of Sequences: 62578
Number of extensions: 521765
Number of successful extensions: 1327
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 45
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)