Query 018138
Match_columns 360
No_of_seqs 318 out of 3012
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 5.4E-40 1.2E-44 308.1 33.2 261 96-360 6-286 (286)
2 KOG2943 Predicted glyoxalase [ 100.0 1.7E-33 3.8E-38 243.8 20.5 247 103-360 6-278 (299)
3 TIGR03211 catechol_2_3 catecho 100.0 6.4E-29 1.4E-33 234.9 26.4 224 112-352 2-265 (303)
4 TIGR02295 HpaD 3,4-dihydroxyph 100.0 1.2E-28 2.6E-33 231.9 26.0 224 111-354 1-258 (294)
5 TIGR03213 23dbph12diox 2,3-dih 100.0 8.2E-28 1.8E-32 225.6 26.3 223 112-353 1-264 (286)
6 PLN02367 lactoylglutathione ly 99.8 3.6E-19 7.9E-24 159.0 20.2 128 111-240 72-224 (233)
7 TIGR00068 glyox_I lactoylgluta 99.8 9.9E-19 2.1E-23 148.3 18.6 136 109-244 12-147 (150)
8 PRK10291 glyoxalase I; Provisi 99.8 9.9E-19 2.2E-23 144.3 16.6 125 120-244 2-126 (129)
9 TIGR01263 4HPPD 4-hydroxypheny 99.8 5.5E-18 1.2E-22 163.6 24.3 231 113-352 1-310 (353)
10 COG2514 Predicted ring-cleavag 99.8 2.6E-18 5.7E-23 153.8 19.3 152 110-277 6-197 (265)
11 PLN03042 Lactoylglutathione ly 99.8 1E-17 2.2E-22 146.5 17.9 129 110-240 23-176 (185)
12 cd07233 Glyoxalase_I Glyoxalas 99.8 2.9E-17 6.2E-22 133.2 16.6 120 115-236 1-121 (121)
13 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 2.5E-17 5.4E-22 138.0 16.4 123 112-238 1-141 (142)
14 cd07257 THT_oxygenase_C The C- 99.8 1.1E-17 2.4E-22 142.5 12.6 119 114-239 1-126 (153)
15 PRK11478 putative lyase; Provi 99.8 4.9E-17 1.1E-21 133.7 15.8 123 111-238 3-129 (129)
16 cd08358 Glo_EDI_BRP_like_21 Th 99.8 6.9E-17 1.5E-21 132.7 16.5 115 113-237 1-126 (127)
17 cd07243 2_3_CTD_C C-terminal d 99.7 6.4E-17 1.4E-21 136.2 16.5 119 111-238 3-125 (143)
18 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 6.8E-17 1.5E-21 131.5 15.3 119 114-236 1-125 (125)
19 cd08360 MhqB_like_C C-terminal 99.7 1.7E-16 3.6E-21 132.0 15.9 118 113-240 2-122 (134)
20 cd07265 2_3_CTD_N N-terminal d 99.7 1.5E-16 3.3E-21 129.7 15.1 116 112-239 2-120 (122)
21 TIGR03645 glyox_marine lactoyl 99.7 2.1E-16 4.5E-21 136.0 16.5 127 112-241 2-154 (162)
22 cd08342 HPPD_N_like N-terminal 99.7 2.8E-16 6E-21 131.0 16.7 120 115-241 1-126 (136)
23 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 2.7E-16 5.8E-21 127.7 15.4 120 113-237 2-125 (125)
24 PRK04101 fosfomycin resistance 99.7 4.1E-16 8.9E-21 130.5 15.9 118 111-239 1-120 (139)
25 cd07237 BphC1-RGP6_C_like C-te 99.7 5.7E-16 1.2E-20 132.1 15.5 124 109-240 4-133 (154)
26 TIGR03213 23dbph12diox 2,3-dih 99.7 4.5E-16 9.8E-21 146.0 15.8 160 69-238 98-263 (286)
27 PLN02300 lactoylglutathione ly 99.7 5.5E-16 1.2E-20 145.5 16.1 147 75-240 134-280 (286)
28 TIGR03081 metmalonyl_epim meth 99.7 4.7E-16 1E-20 127.3 13.2 119 114-237 1-128 (128)
29 cd07256 HPCD_C_class_II C-term 99.7 1.3E-15 2.8E-20 130.9 16.3 119 112-239 1-124 (161)
30 cd09013 BphC-JF8_N_like N-term 99.7 9.3E-16 2E-20 124.9 14.6 115 110-239 2-119 (121)
31 TIGR03211 catechol_2_3 catecho 99.7 8.3E-16 1.8E-20 145.3 15.8 158 70-238 99-265 (303)
32 TIGR02295 HpaD 3,4-dihydroxyph 99.7 8.7E-16 1.9E-20 144.5 15.1 158 69-239 95-257 (294)
33 cd09014 BphC-JF8_C_like C-term 99.7 2.5E-15 5.5E-20 129.7 16.4 124 110-239 2-128 (166)
34 cd07258 PpCmtC_C C-terminal do 99.7 1.6E-15 3.4E-20 127.5 14.7 113 116-240 1-116 (141)
35 PF00903 Glyoxalase: Glyoxalas 99.7 5.7E-16 1.2E-20 126.0 11.7 120 114-235 1-128 (128)
36 cd07266 HPCD_N_class_II N-term 99.7 1.8E-15 3.9E-20 123.0 13.6 115 111-238 1-118 (121)
37 cd07252 BphC1-RGP6_N_like N-te 99.6 4.3E-15 9.3E-20 121.0 14.5 113 113-239 1-118 (120)
38 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 6E-15 1.3E-19 119.7 15.2 118 112-237 1-124 (125)
39 cd08364 FosX FosX, a fosfomyci 99.6 5.9E-15 1.3E-19 122.2 15.3 120 111-239 1-123 (131)
40 cd08347 PcpA_C_like C-terminal 99.6 5.5E-15 1.2E-19 126.4 15.5 118 114-240 1-122 (157)
41 cd07247 SgaA_N_like N-terminal 99.6 5.8E-15 1.3E-19 118.6 14.7 114 115-237 1-114 (114)
42 cd08361 PpCmtC_N N-terminal do 99.6 4.1E-15 8.8E-20 122.0 14.0 113 111-239 3-120 (124)
43 cd07255 Glo_EDI_BRP_like_12 Th 99.6 1.1E-14 2.4E-19 118.8 16.5 118 113-241 1-122 (125)
44 cd08346 PcpA_N_like N-terminal 99.6 6E-15 1.3E-19 120.0 14.8 120 114-236 1-126 (126)
45 cd08343 ED_TypeI_classII_C C-t 99.6 8.1E-15 1.8E-19 121.2 15.7 116 116-240 1-119 (131)
46 cd08363 FosB FosB, a fosfomyci 99.6 4.3E-15 9.4E-20 123.1 13.6 114 115-239 1-116 (131)
47 cd07263 Glo_EDI_BRP_like_16 Th 99.6 7.9E-15 1.7E-19 117.8 14.6 117 117-237 1-119 (119)
48 cd07239 BphC5-RK37_C_like C-te 99.6 8.4E-15 1.8E-19 123.5 15.1 114 113-240 3-119 (144)
49 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 4.7E-15 1E-19 117.8 12.6 113 115-235 1-114 (114)
50 cd07249 MMCE Methylmalonyl-CoA 99.6 7.2E-15 1.6E-19 120.0 14.0 119 115-237 1-128 (128)
51 PLN02875 4-hydroxyphenylpyruva 99.6 5.2E-14 1.1E-18 135.8 21.9 230 115-352 1-340 (398)
52 cd07240 ED_TypeI_classII_N N-t 99.6 1.3E-14 2.8E-19 116.8 14.9 112 113-239 1-115 (117)
53 PRK06724 hypothetical protein; 99.6 1.1E-14 2.5E-19 120.2 14.8 113 111-239 4-124 (128)
54 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 2.2E-14 4.8E-19 117.6 16.2 117 114-238 1-128 (128)
55 cd09011 Glo_EDI_BRP_like_23 Th 99.6 1.5E-14 3.3E-19 117.5 13.6 114 113-238 1-119 (120)
56 PLN02367 lactoylglutathione ly 99.6 1E-14 2.2E-19 130.4 13.4 106 243-354 74-224 (233)
57 cd08351 ChaP_like ChaP, an enz 99.6 3.1E-14 6.6E-19 116.4 15.2 112 111-238 1-121 (123)
58 cd08362 BphC5-RrK37_N_like N-t 99.6 2.5E-14 5.5E-19 115.8 14.3 113 112-239 1-118 (120)
59 cd08348 BphC2-C3-RGP6_C_like T 99.6 6.1E-14 1.3E-18 116.1 16.8 119 114-240 1-122 (134)
60 cd07267 THT_Oxygenase_N N-term 99.6 3.9E-14 8.3E-19 114.1 15.1 110 112-238 1-110 (113)
61 cd07264 Glo_EDI_BRP_like_15 Th 99.6 4.9E-14 1.1E-18 114.9 15.1 115 115-238 1-125 (125)
62 cd08355 Glo_EDI_BRP_like_14 Th 99.6 1.2E-13 2.7E-18 112.3 16.8 114 119-237 4-121 (122)
63 KOG0638 4-hydroxyphenylpyruvat 99.6 2.2E-14 4.7E-19 130.1 12.5 234 111-352 14-337 (381)
64 cd08359 Glo_EDI_BRP_like_22 Th 99.6 8.3E-14 1.8E-18 112.7 14.6 111 117-237 4-119 (119)
65 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 2.2E-13 4.8E-18 110.3 16.8 114 119-237 6-121 (122)
66 cd08342 HPPD_N_like N-terminal 99.6 2.9E-14 6.3E-19 118.8 11.4 105 245-354 1-125 (136)
67 cd07262 Glo_EDI_BRP_like_19 Th 99.6 1.3E-13 2.8E-18 112.3 14.2 114 115-236 1-122 (123)
68 cd08345 Fosfomycin_RP Fosfomyc 99.5 8.3E-14 1.8E-18 111.5 12.6 109 117-238 1-111 (113)
69 cd07257 THT_oxygenase_C The C- 99.5 6.2E-14 1.3E-18 119.4 12.3 108 244-355 1-128 (153)
70 PRK10291 glyoxalase I; Provisi 99.5 9.3E-14 2E-18 114.5 12.7 102 249-354 1-122 (129)
71 PF12681 Glyoxalase_2: Glyoxal 99.5 1.2E-13 2.6E-18 109.6 12.7 108 120-236 1-108 (108)
72 PLN03042 Lactoylglutathione ly 99.5 4.9E-14 1.1E-18 123.3 11.3 107 243-355 26-177 (185)
73 cd08354 Glo_EDI_BRP_like_13 Th 99.5 2.3E-13 5E-18 110.3 14.5 114 115-238 1-122 (122)
74 cd07244 FosA FosA, a Fosfomyci 99.5 1.2E-13 2.7E-18 112.5 12.8 109 114-239 1-111 (121)
75 cd07243 2_3_CTD_C C-terminal d 99.5 6.4E-14 1.4E-18 117.9 11.2 107 242-352 4-125 (143)
76 TIGR00068 glyox_I lactoylgluta 99.5 1.6E-13 3.5E-18 116.3 13.4 110 240-353 13-142 (150)
77 cd08353 Glo_EDI_BRP_like_7 Thi 99.5 9.1E-14 2E-18 116.3 11.6 104 243-352 2-141 (142)
78 cd07238 Glo_EDI_BRP_like_5 Thi 99.5 3.5E-13 7.5E-18 108.0 14.4 107 119-238 5-111 (112)
79 PRK11478 putative lyase; Provi 99.5 1.3E-13 2.7E-18 113.2 12.1 104 243-351 5-128 (129)
80 cd08357 Glo_EDI_BRP_like_18 Th 99.5 2E-13 4.3E-18 111.2 13.0 113 117-237 2-124 (125)
81 cd08360 MhqB_like_C C-terminal 99.5 9.4E-14 2E-18 115.4 11.3 113 242-358 1-126 (134)
82 cd06587 Glo_EDI_BRP_like This 99.5 4.8E-13 1E-17 105.0 13.7 112 117-235 1-112 (112)
83 cd08344 MhqB_like_N N-terminal 99.5 4.6E-13 1E-17 107.5 13.8 108 113-239 1-110 (112)
84 cd08349 BLMA_like Bleomycin bi 99.5 6.4E-13 1.4E-17 105.9 14.5 109 119-237 3-112 (112)
85 COG3324 Predicted enzyme relat 99.5 5.5E-13 1.2E-17 108.1 13.9 120 101-239 6-126 (127)
86 cd07254 Glo_EDI_BRP_like_20 Th 99.5 6.5E-13 1.4E-17 107.7 14.3 112 116-239 3-118 (120)
87 cd07233 Glyoxalase_I Glyoxalas 99.5 2.7E-13 5.9E-18 109.7 12.0 100 245-350 1-121 (121)
88 TIGR03645 glyox_marine lactoyl 99.5 1.8E-13 3.9E-18 117.7 11.4 108 243-354 3-153 (162)
89 cd07265 2_3_CTD_N N-terminal d 99.5 2.5E-13 5.4E-18 110.6 11.4 107 243-353 3-120 (122)
90 cd07235 MRD Mitomycin C resist 99.5 6.4E-13 1.4E-17 108.0 13.6 113 115-236 1-121 (122)
91 cd09011 Glo_EDI_BRP_like_23 Th 99.5 2.5E-13 5.5E-18 110.3 11.1 104 244-352 2-119 (120)
92 cd07247 SgaA_N_like N-terminal 99.5 4.3E-13 9.2E-18 107.6 12.2 102 245-351 1-114 (114)
93 cd07237 BphC1-RGP6_C_like C-te 99.5 3.8E-13 8.3E-18 114.6 11.8 113 242-358 7-137 (154)
94 cd08352 Glo_EDI_BRP_like_1 Thi 99.5 4E-13 8.7E-18 108.9 11.4 104 243-351 2-125 (125)
95 cd07261 Glo_EDI_BRP_like_11 Th 99.5 1.2E-12 2.5E-17 105.1 13.9 108 118-236 2-113 (114)
96 PF13669 Glyoxalase_4: Glyoxal 99.5 5.4E-13 1.2E-17 106.9 11.8 95 116-212 1-97 (109)
97 PRK06724 hypothetical protein; 99.5 3.9E-13 8.5E-18 111.0 11.0 105 243-353 6-124 (128)
98 cd07258 PpCmtC_C C-terminal do 99.5 5E-13 1.1E-17 112.2 11.5 109 246-358 1-120 (141)
99 PRK04101 fosfomycin resistance 99.5 5.3E-13 1.1E-17 111.6 11.1 106 243-353 3-120 (139)
100 cd07241 Glo_EDI_BRP_like_3 Thi 99.5 4.7E-13 1E-17 108.7 10.6 102 244-350 1-125 (125)
101 cd08350 BLMT_like BLMT, a bleo 99.5 1.5E-12 3.3E-17 105.7 13.4 107 118-238 6-119 (120)
102 cd09012 Glo_EDI_BRP_like_24 Th 99.5 1.1E-12 2.3E-17 107.3 12.3 112 116-237 2-123 (124)
103 cd08358 Glo_EDI_BRP_like_21 Th 99.4 8.5E-13 1.8E-17 108.4 10.9 94 244-351 2-126 (127)
104 COG3324 Predicted enzyme relat 99.4 8.9E-13 1.9E-17 106.9 10.7 107 242-353 7-126 (127)
105 cd08363 FosB FosB, a fosfomyci 99.4 9.1E-13 2E-17 109.1 10.6 104 245-353 1-116 (131)
106 cd07239 BphC5-RK37_C_like C-te 99.4 1.3E-12 2.8E-17 110.1 11.4 110 243-356 3-121 (144)
107 cd07264 Glo_EDI_BRP_like_15 Th 99.4 1.3E-12 2.9E-17 106.3 11.2 103 245-352 1-125 (125)
108 TIGR03081 metmalonyl_epim meth 99.4 1.2E-12 2.6E-17 106.9 10.9 103 244-351 1-128 (128)
109 cd07263 Glo_EDI_BRP_like_16 Th 99.4 1.4E-12 3E-17 104.7 10.9 99 247-351 1-119 (119)
110 cd07256 HPCD_C_class_II C-term 99.4 1.2E-12 2.6E-17 112.3 11.0 108 242-353 1-124 (161)
111 KOG2944 Glyoxalase [Carbohydra 99.4 4.8E-13 1E-17 110.1 7.8 123 114-238 22-168 (170)
112 cd07253 Glo_EDI_BRP_like_2 Thi 99.4 1.8E-12 4E-17 105.0 10.9 105 243-351 2-124 (125)
113 cd08361 PpCmtC_N N-terminal do 99.4 2.4E-12 5.2E-17 105.4 11.3 107 243-353 5-120 (124)
114 cd08359 Glo_EDI_BRP_like_22 Th 99.4 2.5E-12 5.4E-17 104.0 11.1 100 247-351 4-119 (119)
115 cd07245 Glo_EDI_BRP_like_9 Thi 99.4 2.2E-12 4.7E-17 102.3 10.6 99 245-349 1-114 (114)
116 cd07252 BphC1-RGP6_N_like N-te 99.4 3.4E-12 7.4E-17 103.8 12.0 106 244-353 2-118 (120)
117 cd08364 FosX FosX, a fosfomyci 99.4 3.3E-12 7.2E-17 105.7 10.9 106 243-353 3-123 (131)
118 cd07266 HPCD_N_class_II N-term 99.4 3.1E-12 6.7E-17 103.8 10.1 106 243-352 3-118 (121)
119 cd08351 ChaP_like ChaP, an enz 99.4 4.4E-12 9.5E-17 103.6 11.0 105 244-352 4-121 (123)
120 cd07238 Glo_EDI_BRP_like_5 Thi 99.4 5.1E-12 1.1E-16 101.1 11.1 100 248-352 4-111 (112)
121 cd08362 BphC5-RrK37_N_like N-t 99.4 3.3E-12 7.1E-17 103.3 10.0 107 243-353 2-118 (120)
122 cd07242 Glo_EDI_BRP_like_6 Thi 99.4 6E-12 1.3E-16 103.1 11.5 104 244-351 1-127 (128)
123 cd07261 Glo_EDI_BRP_like_11 Th 99.4 8E-12 1.7E-16 100.2 11.7 97 248-350 2-113 (114)
124 cd09013 BphC-JF8_N_like N-term 99.4 3.6E-12 7.8E-17 103.6 9.7 104 243-352 5-118 (121)
125 cd08356 Glo_EDI_BRP_like_17 Th 99.4 1.1E-11 2.4E-16 99.8 12.4 103 119-237 6-113 (113)
126 cd07251 Glo_EDI_BRP_like_10 Th 99.4 1.7E-11 3.7E-16 99.0 13.5 110 118-237 2-120 (121)
127 cd07240 ED_TypeI_classII_N N-t 99.3 7.7E-12 1.7E-16 100.5 10.7 104 244-352 2-114 (117)
128 PF00903 Glyoxalase: Glyoxalas 99.3 6.5E-13 1.4E-17 107.9 4.2 102 244-349 1-128 (128)
129 cd08355 Glo_EDI_BRP_like_14 Th 99.3 9.6E-12 2.1E-16 101.1 11.2 99 248-351 3-121 (122)
130 cd08347 PcpA_C_like C-terminal 99.3 9.1E-12 2E-16 106.5 11.3 103 244-353 1-121 (157)
131 cd08343 ED_TypeI_classII_C C-t 99.3 1.3E-11 2.7E-16 102.1 11.7 105 246-354 1-119 (131)
132 cd08345 Fosfomycin_RP Fosfomyc 99.3 6.7E-12 1.4E-16 100.4 9.5 101 247-352 1-111 (113)
133 cd07249 MMCE Methylmalonyl-CoA 99.3 1.7E-11 3.6E-16 99.9 11.3 102 245-351 1-128 (128)
134 cd07244 FosA FosA, a Fosfomyci 99.3 1.1E-11 2.3E-16 100.9 9.5 102 244-353 1-111 (121)
135 cd07262 Glo_EDI_BRP_like_19 Th 99.3 2.5E-11 5.4E-16 98.7 11.4 102 245-350 1-122 (123)
136 cd09014 BphC-JF8_C_like C-term 99.3 1.6E-11 3.5E-16 105.9 10.7 106 243-352 5-127 (166)
137 PF12681 Glyoxalase_2: Glyoxal 99.3 1.1E-11 2.3E-16 98.2 8.9 96 250-350 1-108 (108)
138 cd07255 Glo_EDI_BRP_like_12 Th 99.3 3.4E-11 7.5E-16 98.0 12.0 103 244-353 2-120 (125)
139 cd08346 PcpA_N_like N-terminal 99.3 1.6E-11 3.6E-16 99.6 10.0 100 244-350 1-126 (126)
140 cd08349 BLMA_like Bleomycin bi 99.3 2.8E-11 6.1E-16 96.3 11.1 98 249-351 3-112 (112)
141 cd07267 THT_Oxygenase_N N-term 99.3 3E-11 6.5E-16 97.1 10.8 104 243-353 2-111 (113)
142 cd07235 MRD Mitomycin C resist 99.3 3E-11 6.5E-16 98.1 10.6 100 245-350 1-121 (122)
143 cd08344 MhqB_like_N N-terminal 99.3 2.7E-11 5.9E-16 97.1 9.9 101 244-352 2-109 (112)
144 cd08348 BphC2-C3-RGP6_C_like T 99.3 5.4E-11 1.2E-15 98.3 11.9 105 244-355 1-123 (134)
145 cd09012 Glo_EDI_BRP_like_24 Th 99.3 2.8E-11 6.1E-16 98.8 10.0 100 245-351 1-123 (124)
146 cd07246 Glo_EDI_BRP_like_8 Thi 99.3 4.8E-11 1E-15 96.5 10.8 100 248-352 5-122 (122)
147 KOG2944 Glyoxalase [Carbohydra 99.3 2.4E-11 5.3E-16 100.1 9.0 103 244-353 42-169 (170)
148 cd07254 Glo_EDI_BRP_like_20 Th 99.3 5.9E-11 1.3E-15 96.1 11.3 103 246-352 3-117 (120)
149 cd08354 Glo_EDI_BRP_like_13 Th 99.3 4.7E-11 1E-15 96.6 10.7 102 245-352 1-122 (122)
150 cd08357 Glo_EDI_BRP_like_18 Th 99.2 5.5E-11 1.2E-15 96.6 10.4 101 247-351 2-124 (125)
151 cd07250 HPPD_C_like C-terminal 99.2 1.6E-10 3.5E-15 102.0 11.6 100 113-214 2-114 (191)
152 cd06587 Glo_EDI_BRP_like This 99.2 1.7E-10 3.7E-15 90.3 9.8 98 247-349 1-112 (112)
153 cd07251 Glo_EDI_BRP_like_10 Th 99.1 3.6E-10 7.9E-15 91.1 10.6 99 248-351 2-120 (121)
154 cd08356 Glo_EDI_BRP_like_17 Th 99.1 3.1E-10 6.7E-15 91.3 9.7 98 248-351 5-113 (113)
155 cd08350 BLMT_like BLMT, a bleo 99.1 4.4E-10 9.5E-15 91.2 10.1 100 247-352 5-119 (120)
156 COG3185 4-hydroxyphenylpyruvat 99.1 3.8E-09 8.2E-14 98.2 14.2 203 112-327 20-275 (363)
157 COG3565 Predicted dioxygenase 99.0 6.7E-09 1.5E-13 81.1 11.0 117 113-237 3-128 (138)
158 TIGR01263 4HPPD 4-hydroxypheny 99.0 3.6E-09 7.7E-14 102.3 11.1 102 110-213 154-268 (353)
159 COG0346 GloA Lactoylglutathion 98.9 2.3E-09 5E-14 86.5 7.3 122 113-237 1-138 (138)
160 KOG2943 Predicted glyoxalase [ 98.9 3.7E-09 7.9E-14 92.9 8.6 102 242-352 15-143 (299)
161 cd06588 PhnB_like Escherichia 98.9 5.3E-08 1.1E-12 80.1 14.5 109 120-235 5-127 (128)
162 COG2764 PhnB Uncharacterized p 98.9 1.1E-07 2.5E-12 78.5 15.3 116 120-240 6-133 (136)
163 PF13669 Glyoxalase_4: Glyoxal 98.9 7.4E-09 1.6E-13 82.7 7.2 77 246-326 1-97 (109)
164 PF13468 Glyoxalase_3: Glyoxal 98.8 5.6E-08 1.2E-12 84.5 12.5 145 115-264 1-173 (175)
165 PLN02875 4-hydroxyphenylpyruva 98.7 5.5E-08 1.2E-12 94.3 10.3 100 111-212 177-295 (398)
166 COG3607 Predicted lactoylgluta 98.7 5.6E-08 1.2E-12 77.3 7.3 100 244-350 3-125 (133)
167 COG3607 Predicted lactoylgluta 98.6 6.3E-07 1.4E-11 71.4 11.8 117 114-240 3-129 (133)
168 COG2514 Predicted ring-cleavag 98.6 2.3E-07 5.1E-12 83.8 9.3 105 241-352 7-126 (265)
169 cd07250 HPPD_C_like C-terminal 98.5 2.7E-07 5.9E-12 81.4 7.2 81 243-327 2-113 (191)
170 PF14506 CppA_N: CppA N-termin 98.4 1.3E-05 2.9E-10 63.6 14.3 113 117-239 3-115 (125)
171 PRK01037 trmD tRNA (guanine-N( 98.4 2E-06 4.3E-11 81.0 10.9 106 113-238 246-354 (357)
172 COG3565 Predicted dioxygenase 98.3 3.4E-06 7.5E-11 66.1 8.9 105 244-352 4-129 (138)
173 cd06588 PhnB_like Escherichia 98.3 3.3E-06 7.1E-11 69.4 8.9 96 249-350 4-128 (128)
174 COG0346 GloA Lactoylglutathion 98.3 5.4E-07 1.2E-11 72.4 4.1 101 244-351 2-138 (138)
175 PRK10148 hypothetical protein; 98.2 0.00015 3.2E-09 61.2 16.5 116 119-242 6-145 (147)
176 PRK01037 trmD tRNA (guanine-N( 98.1 1.4E-05 3.1E-10 75.3 10.0 100 243-351 246-353 (357)
177 COG2764 PhnB Uncharacterized p 98.1 5.8E-05 1.3E-09 62.4 11.0 99 250-353 6-132 (136)
178 COG3185 4-hydroxyphenylpyruvat 98.0 1.1E-05 2.4E-10 75.5 7.1 103 111-214 164-276 (363)
179 KOG0638 4-hydroxyphenylpyruvat 97.8 8.3E-05 1.8E-09 68.5 8.0 110 243-356 16-152 (381)
180 PF14696 Glyoxalase_5: Hydroxy 97.8 0.00026 5.6E-09 58.9 9.8 121 110-241 5-129 (139)
181 PF14696 Glyoxalase_5: Hydroxy 96.9 0.0022 4.8E-08 53.3 6.2 104 243-353 8-127 (139)
182 PRK10148 hypothetical protein; 96.9 0.013 2.7E-07 49.4 11.0 53 298-352 86-141 (147)
183 PF06983 3-dmu-9_3-mt: 3-demet 96.1 0.27 5.9E-06 39.6 13.2 96 123-236 11-116 (116)
184 PF13468 Glyoxalase_3: Glyoxal 96.1 0.0088 1.9E-07 51.7 4.7 73 245-321 1-101 (175)
185 PF14507 CppA_C: CppA C-termin 95.7 0.031 6.8E-07 43.5 5.8 89 245-349 6-100 (101)
186 PF15067 FAM124: FAM124 family 95.4 0.13 2.8E-06 46.0 9.2 103 114-235 128-235 (236)
187 PF14506 CppA_N: CppA N-termin 95.0 0.37 8E-06 38.7 9.9 100 247-354 3-116 (125)
188 PF14507 CppA_C: CppA C-termin 91.2 0.43 9.2E-06 37.3 4.7 88 114-233 5-98 (101)
189 PF15067 FAM124: FAM124 family 85.9 4.3 9.2E-05 36.5 7.9 93 243-349 127-235 (236)
190 PRK11700 hypothetical protein; 74.3 55 0.0012 28.6 10.5 79 112-193 37-120 (187)
191 COG4747 ACT domain-containing 69.1 59 0.0013 26.2 11.0 26 299-324 110-135 (142)
192 PF06185 YecM: YecM protein; 66.8 42 0.00091 29.3 8.3 85 112-201 32-124 (185)
193 PF13670 PepSY_2: Peptidase pr 64.0 30 0.00065 25.6 6.2 46 193-240 30-75 (83)
194 PF13670 PepSY_2: Peptidase pr 58.3 30 0.00065 25.6 5.3 45 307-353 30-74 (83)
195 cd07268 Glo_EDI_BRP_like_4 Thi 57.7 59 0.0013 27.3 7.3 20 245-264 2-21 (149)
196 COG3865 Uncharacterized protei 56.3 1.2E+02 0.0026 25.4 12.2 98 123-238 14-124 (151)
197 cd07268 Glo_EDI_BRP_like_4 Thi 54.2 1.3E+02 0.0029 25.2 10.1 76 115-193 2-82 (149)
198 PF06983 3-dmu-9_3-mt: 3-demet 52.7 1.2E+02 0.0025 24.2 9.7 41 299-350 73-116 (116)
199 PRK11700 hypothetical protein; 52.1 45 0.00098 29.1 5.9 22 243-264 38-59 (187)
200 cd04882 ACT_Bt0572_2 C-termina 45.2 42 0.00092 22.8 4.1 26 297-322 39-64 (65)
201 cd04883 ACT_AcuB C-terminal AC 44.8 44 0.00096 23.4 4.3 29 297-325 41-71 (72)
202 cd04895 ACT_ACR_1 ACT domain-c 43.8 88 0.0019 22.8 5.6 41 308-348 15-56 (72)
203 cd04882 ACT_Bt0572_2 C-termina 41.8 54 0.0012 22.2 4.2 26 183-208 39-64 (65)
204 PF07063 DUF1338: Domain of un 40.9 56 0.0012 30.9 5.3 30 294-323 181-216 (302)
205 cd04883 ACT_AcuB C-terminal AC 40.4 68 0.0015 22.4 4.7 28 184-211 42-71 (72)
206 KOG4657 Uncharacterized conser 39.9 90 0.0019 28.1 6.0 38 122-162 144-181 (246)
207 cd04895 ACT_ACR_1 ACT domain-c 35.7 1.5E+02 0.0032 21.6 5.7 41 194-234 15-56 (72)
208 PF06185 YecM: YecM protein; 35.4 98 0.0021 27.0 5.5 22 243-264 33-54 (185)
209 PF07063 DUF1338: Domain of un 32.4 97 0.0021 29.3 5.4 29 181-209 182-216 (302)
210 COG3254 Uncharacterized conser 29.1 1E+02 0.0022 24.2 4.1 36 309-356 27-62 (105)
211 cd04897 ACT_ACR_3 ACT domain-c 27.0 2.4E+02 0.0051 20.7 5.6 41 308-348 15-56 (75)
212 TIGR00318 cyaB adenylyl cyclas 21.0 5.2E+02 0.011 21.9 7.7 77 187-274 6-101 (174)
213 PF08445 FR47: FR47-like prote 21.0 2.1E+02 0.0045 21.2 4.5 23 120-143 60-82 (86)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=5.4e-40 Score=308.10 Aligned_cols=261 Identities=84% Similarity=1.380 Sum_probs=215.7
Q ss_pred CccccccccccccccccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCC
Q 018138 96 SNTVTEQNVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV 175 (360)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~ 175 (360)
++++.......|..+.+.+|.||+|.|+|++++++||+++|||++..+...++..+..+|+..++...++.+++....+.
T Consensus 6 ~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~ 85 (286)
T PLN02300 6 STAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV 85 (286)
T ss_pred ccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC
Confidence 44567778889999999999999999999999999999999999987665555556678887765555677888764443
Q ss_pred CCCcCCCcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCCCCCCceeceeeecCH
Q 018138 176 DKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDL 255 (360)
Q Consensus 176 ~~~~~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~i~hv~L~V~D~ 255 (360)
.....+.++.|++|.|+|+++++++++++|+++..+|...++++..++||+||||+.|||++..+.+.++.|+.|.|+|+
T Consensus 86 ~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~ 165 (286)
T PLN02300 86 DKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGDL 165 (286)
T ss_pred CccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCCH
Confidence 33345568899999999999999999999999998887777665557899999999999999998899999999999999
Q ss_pred HHHHHHhhhcceEEeeeccCCC----c--cE-E-------------EEEEeCCcccccCCCCeeEEEEEeCCHHHHHHHH
Q 018138 256 DRAINFYKKYTIAVMGYGPEDK----N--AV-L-------------ELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAI 315 (360)
Q Consensus 256 e~a~~FY~~~~~~~lG~~~~~~----~--~~-l-------------~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~~~~l 315 (360)
+++.+||++ +|||+.... . .. . ++..+.+...+..+++.||++|.|+|++++++++
T Consensus 166 ~~a~~Fy~~----~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~ 241 (286)
T PLN02300 166 DRSIKFYEK----AFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAI 241 (286)
T ss_pred HHHHHHHHh----ccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHH
Confidence 999999999 999985321 1 11 1 1111111112344688999999999999999999
Q ss_pred HHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcccccccC
Q 018138 316 KLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKELE 360 (360)
Q Consensus 316 ~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 360 (360)
+++|+++..+|...|+..++.++|+||||+.++|++.++|++|||
T Consensus 242 ~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 242 KLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred HHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhcC
Confidence 999999999998888755689999999999999999999999987
No 2
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=243.77 Aligned_cols=247 Identities=51% Similarity=0.871 Sum_probs=212.3
Q ss_pred ccccccccccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCC-----------CCeEEEEEeeCCCCceEEEEEEe
Q 018138 103 NVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTY 171 (360)
Q Consensus 103 ~~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~lel~~ 171 (360)
..++|...+..+..|+++.|.|.+++++||+++|||++.+..++++ +.|+..++++|++..||++||+.
T Consensus 6 d~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTY 85 (299)
T KOG2943|consen 6 DLLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTY 85 (299)
T ss_pred hhhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEe
Confidence 5789999999999999999999999999999999999999888877 77889999999999999999999
Q ss_pred cCCCCCCcCCCcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCCCCCCceeceee
Q 018138 172 NYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLR 251 (360)
Q Consensus 172 ~~~~~~~~~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~i~hv~L~ 251 (360)
++++..+..|+++.|+.+.++|+-..++.+...|.+. ++...+++.||||+.|+|++..+.+.+++.|+|+
T Consensus 86 NYgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~~---------~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~ 156 (299)
T KOG2943|consen 86 NYGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGKG---------SGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLN 156 (299)
T ss_pred ccCccceeccCCcccEEEeHHHHHHHHHHhcCcCCcc---------cceEEEEEECCCCcEEEEeccCCCCCCeEEEEEE
Confidence 9999999999999999999999888888887766531 2344688999999999999999999999999999
Q ss_pred ecCHHHHHHHhhh------------cceEEeeeccCCCccEEEEEEeCCcccccCCCCeeEEEEEeCCHHHHHHHHHHcC
Q 018138 252 VGDLDRAINFYKK------------YTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSG 319 (360)
Q Consensus 252 V~D~e~a~~FY~~------------~~~~~lG~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~~~~l~~~G 319 (360)
|.|+++|++||.+ ++.++|||..+ ++.+|++++++..++..|.|...+++..+++..+.+.++..+
T Consensus 157 VgdL~ks~kyw~~~lgM~ilekeek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~iK~~n 234 (299)
T KOG2943|consen 157 VGDLQKSIKYWEKLLGMKILEKEEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAIKSAN 234 (299)
T ss_pred ehhHHHHHHHHHHHhCcchhhhhhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHHHHhc
Confidence 9999999999996 33334444333 588999999999888888887777777899999999999997
Q ss_pred CeEeeCCccc--CCC-CcEEEEEECCCCCeEEEEcCcccccccC
Q 018138 320 GKITREPGPL--PGI-NTKITACLDPDGWKSVFVDNLDFLKELE 360 (360)
Q Consensus 320 ~~i~~~p~~~--~~~-~~~~~~~~DPdG~~iel~~~~~~~~~~~ 360 (360)
.+|..+..+. |+. ...++.+.|||||.|+|+.+++|.++.+
T Consensus 235 ~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 235 GTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred cccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 7766554433 332 2467889999999999999999998753
No 3
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.97 E-value=6.4e-29 Score=234.90 Aligned_cols=224 Identities=23% Similarity=0.297 Sum_probs=163.7
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEE
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 191 (360)
+++|+||.|.|+|++++++||+++|||++..+... .+++.......++.+.+.+. ...++.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 67899999999999999999999999999765321 24454322222344554432 124689999999
Q ss_pred C---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCCC---------------------CCCcee
Q 018138 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------------------PEPLCQ 247 (360)
Q Consensus 192 ~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~~---------------------~~~i~h 247 (360)
+ |+++++++|+++|+++...|.....+....+||+||+|+.|||++.... ..+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 8 7999999999999998766542222222368999999999999974421 236899
Q ss_pred ceeeecCHHHHHHHhhhcceEEeeeccCCC------c--cEEEEEEeCCccc--c--cCCCC-eeEEEEEeCC---HHHH
Q 018138 248 VMLRVGDLDRAINFYKKYTIAVMGYGPEDK------N--AVLELTYNHGVTE--Y--DKGNG-YAQIAIGTDD---VYKT 311 (360)
Q Consensus 248 v~L~V~D~e~a~~FY~~~~~~~lG~~~~~~------~--~~l~l~~~~~~~~--~--~~g~g-~~hiaf~V~D---l~~~ 311 (360)
|.|.|+|++++.+||++ +|||+..+. . ....+........ . ..+.+ ++|+||.|+| ++++
T Consensus 149 i~l~V~Dl~~s~~FY~~----~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Hiaf~v~~~~~v~~~ 224 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTE----VLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDIAFVGDPEPGKLHHVSFFLDSWEDVLKA 224 (303)
T ss_pred EeEEeCCHHHHHHHHHH----hcCCEEEeeEEcCCCcEEEEEEEEcCCCCcccceecCCCCCceEEEEEEcCCHHHHHHH
Confidence 99999999999999999 999975321 1 1122222111111 1 12345 8999999986 5568
Q ss_pred HHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 312 AEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 312 ~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
+++|+++|+++..+|.+++...++.+||+|||||.||++..
T Consensus 225 ~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 225 ADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred HHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecC
Confidence 88999999999988887765446899999999999999844
No 4
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.97 E-value=1.2e-28 Score=231.94 Aligned_cols=224 Identities=27% Similarity=0.335 Sum_probs=163.9
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEE
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 190 (360)
++++|+||.|.|+|++++++||+++|||++..+.. . .+++.......++.+.+... ...++.|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~--~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----E--YIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----C--eEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 46899999999999999999999999999975532 1 35554322222344544432 12468899999
Q ss_pred EC---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC---------------CCCCceeceeee
Q 018138 191 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------TPEPLCQVMLRV 252 (360)
Q Consensus 191 V~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~---------------~~~~i~hv~L~V 252 (360)
|+ |+++++++|+++|+++...+.. .+ ...+||+|||||.|||+.... .+.+++|+.|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~~--~~-~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRDG--GQ-PEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecCC--CC-ceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 97 7999999999999998765432 22 247999999999999996331 235789999999
Q ss_pred cCHHHHHHHhhhcceEEeeeccCCC-----cc--EEEEEEeCCcc--cc--cCCCCeeEEEEEeCC---HHHHHHHHHHc
Q 018138 253 GDLDRAINFYKKYTIAVMGYGPEDK-----NA--VLELTYNHGVT--EY--DKGNGYAQIAIGTDD---VYKTAEAIKLS 318 (360)
Q Consensus 253 ~D~e~a~~FY~~~~~~~lG~~~~~~-----~~--~l~l~~~~~~~--~~--~~g~g~~hiaf~V~D---l~~~~~~l~~~ 318 (360)
+|++++.+||++ +||++..+. .. ...+....... .. ..+++++|+||.|+| +++++++|+++
T Consensus 145 ~dl~~a~~Fy~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~ 220 (294)
T TIGR02295 145 PDVQRALRFYKE----ELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALTNGNGPRLHHIAYWVHDPLNIIKACDILASA 220 (294)
T ss_pred CCHHHHHHHHHH----hcCCEEEEEeccCCCcEEEEEEecCCCcCceEeecCCCCceeeEEEEcCCHHHHHHHHHHHHhC
Confidence 999999999999 999975321 11 11121111111 11 124678999999988 55678999999
Q ss_pred CCe--EeeCCcccCCCCcEEEEEECCCCCeEEEEcCcc
Q 018138 319 GGK--ITREPGPLPGINTKITACLDPDGWKSVFVDNLD 354 (360)
Q Consensus 319 G~~--i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 354 (360)
|++ +..+|+.++.+..+++|++||+|+.|||+....
T Consensus 221 G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 258 (294)
T TIGR02295 221 GLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGDY 258 (294)
T ss_pred CCCcccccCCccCCCCcceEEEEECCCCCEEEEEeccc
Confidence 998 777787776655678999999999999987654
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.96 E-value=8.2e-28 Score=225.59 Aligned_cols=223 Identities=19% Similarity=0.252 Sum_probs=164.4
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEE
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 191 (360)
+.+|+||+|.|+|++++++||+++|||++..+.+ . ...|+..+.. ++.+.+.... ..++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSR--AHRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCC--ceEEEEEECC-------cCCeeeEeeee
Confidence 4689999999999999999999999999864321 1 1246666432 3445554321 13578999999
Q ss_pred CC---HHHHHHHHHHcCCeEecCCeec--CCCCEEEEEEECCCCCEEEEeecCCC------------------CCCceec
Q 018138 192 ED---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERGPT------------------PEPLCQV 248 (360)
Q Consensus 192 ~D---ld~~~~rL~~~G~~~~~~p~~~--~~g~~~~~~~~DPdG~~iEl~~~~~~------------------~~~i~hv 248 (360)
+| ++++.++|+++|+++...|... ..+....++|.|||||.+|++..... +.+++||
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 98 8999999999999988765421 12334469999999999999963321 2379999
Q ss_pred eeeecCHHHHHHHhhhcceEEeeeccCCC-------c---cEEEEEEeCCcc-----cccCCCCeeEEEEEeCCHHH---
Q 018138 249 MLRVGDLDRAINFYKKYTIAVMGYGPEDK-------N---AVLELTYNHGVT-----EYDKGNGYAQIAIGTDDVYK--- 310 (360)
Q Consensus 249 ~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-------~---~~l~l~~~~~~~-----~~~~g~g~~hiaf~V~Dl~~--- 310 (360)
.|.|+|++++.+||++ +|||+..+. . ....+..+.... ..+...+++|++|.|+|+++
T Consensus 147 ~l~v~Dle~s~~FY~~----~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Hiaf~v~d~~~v~~ 222 (286)
T TIGR03213 147 VLRVPDVDAALAFYTE----VLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGPSEKRLNHLMLEVDTLDDVGL 222 (286)
T ss_pred EEEcCCHHHHHHHHHH----ccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCCCCCceEEEEEEcCCHHHHHH
Confidence 9999999999999999 999985321 1 122333321111 11224689999999987665
Q ss_pred HHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 311 TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 311 ~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
++++|+++|+ +...|++++.+..+++|++||+|++||+....
T Consensus 223 ~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 223 ALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred HHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 8999999999 66777777766678999999999999998654
No 6
>PLN02367 lactoylglutathione lyase
Probab=99.84 E-value=3.6e-19 Score=158.96 Aligned_cols=128 Identities=37% Similarity=0.681 Sum_probs=105.1
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCC---------------ceEEEEEEecCCC
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPED---------------SHFVVELTYNYGV 175 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~lel~~~~~~ 175 (360)
.-..+.|++|+|+|++++++||+++|||++..+.++++.+++.+|+++++.. ....|||.++.+.
T Consensus 72 ~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~ 151 (233)
T PLN02367 72 KGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGT 151 (233)
T ss_pred CCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCC
Confidence 4567999999999999999999999999999999888888999999764321 1357999876553
Q ss_pred C------CCcCC----CcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 176 D------KYDIG----TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 176 ~------~~~~g----~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
. .+..+ .|++|++|.|+|+++++++|+++|+++..+|....+ ..++|++||||+.|||++...
T Consensus 152 e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 152 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 3 13333 489999999999999999999999999887765332 346899999999999999765
No 7
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.82 E-value=9.9e-19 Score=148.34 Aligned_cols=136 Identities=63% Similarity=1.090 Sum_probs=105.5
Q ss_pred ccccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEE
Q 018138 109 KSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFG 188 (360)
Q Consensus 109 ~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~ 188 (360)
....++|+||.|.|+|++++.+||+++|||++..+.+.++..+..+++..++......+++...........+.++.|++
T Consensus 12 ~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~ 91 (150)
T TIGR00068 12 KTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIA 91 (150)
T ss_pred ccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEE
Confidence 45678999999999999999999999999999766554444455667766544444566665433322233455789999
Q ss_pred EEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCCCCCC
Q 018138 189 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 244 (360)
Q Consensus 189 f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~ 244 (360)
|.|+|+++++++|.++|+++..+|...+.+....+||+||+|+.|||++......+
T Consensus 92 f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 147 (150)
T TIGR00068 92 IGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDG 147 (150)
T ss_pred EecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhh
Confidence 99999999999999999999888766666656678999999999999998765433
No 8
>PRK10291 glyoxalase I; Provisional
Probab=99.81 E-value=9.9e-19 Score=144.30 Aligned_cols=125 Identities=56% Similarity=1.044 Sum_probs=98.6
Q ss_pred EEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCHHHHHH
Q 018138 120 YRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVD 199 (360)
Q Consensus 120 l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dld~~~~ 199 (360)
|.|+|++++++||+++|||++..+...++..+..+++..++......+++.......++..+.+++|++|+|+|++++++
T Consensus 2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~~ 81 (129)
T PRK10291 2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACE 81 (129)
T ss_pred EEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHHH
Confidence 78999999999999999999987665565667788887665444456777654333334456689999999999999999
Q ss_pred HHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCCCCCC
Q 018138 200 LVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 244 (360)
Q Consensus 200 rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~ 244 (360)
+|+++|+++..++....++...++||.||||+.|||++....+.+
T Consensus 82 ~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~~ 126 (129)
T PRK10291 82 KIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGRG 126 (129)
T ss_pred HHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccccc
Confidence 999999999877766666655678899999999999997754433
No 9
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.81 E-value=5.5e-18 Score=163.60 Aligned_cols=231 Identities=21% Similarity=0.333 Sum_probs=153.2
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC------CcCCCcceE
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YDIGTGFGH 186 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~------~~~g~g~~h 186 (360)
++++||.+.|+|++++.+||++.|||++..+....... ..+.++.| ...+++..+..... ...+.|+.|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEE
Confidence 46899999999999999999999999998763222222 22333332 24677765432221 125789999
Q ss_pred EEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC-------------------------C
Q 018138 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP-------------------------T 241 (360)
Q Consensus 187 i~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~-------------------------~ 241 (360)
++|+|+|+++++++++++|+++..+|.....|...+.-+..++|..+.|+++.. .
T Consensus 76 iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (353)
T TIGR01263 76 VAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVG 155 (353)
T ss_pred EEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCC
Confidence 999999999999999999999987766431122223333445555555544210 0
Q ss_pred CCCceeceeeec--CHHHHHHHhhhcceEEeeeccCC--------------------CccEEEEEEeCC---cc------
Q 018138 242 PEPLCQVMLRVG--DLDRAINFYKKYTIAVMGYGPED--------------------KNAVLELTYNHG---VT------ 290 (360)
Q Consensus 242 ~~~i~hv~L~V~--D~e~a~~FY~~~~~~~lG~~~~~--------------------~~~~l~l~~~~~---~~------ 290 (360)
..+++||++.|. |++++.+||++ +||++... ....+++..... ..
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~----~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl 231 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEK----IFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFL 231 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHH----HhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHH
Confidence 125999999999 99999999999 89986421 011122222100 11
Q ss_pred cccCCCCeeEEEEEeCCHHHHHHHHHHcCCeEeeCCcc--------cC---C------CCcEEEEEECCCCCeEEEEcC
Q 018138 291 EYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGP--------LP---G------INTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 291 ~~~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~--------~~---~------~~~~~~~~~DPdG~~iel~~~ 352 (360)
....|.|++|+||.|+|+++++++|+++|+++...|.. .+ . ....+.+=+|.+|.++.++..
T Consensus 232 ~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~ 310 (353)
T TIGR01263 232 EFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTK 310 (353)
T ss_pred HHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEecCCCceEEEEecc
Confidence 12247899999999999999999999999999987721 11 0 011245556777777776654
No 10
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.81 E-value=2.6e-18 Score=153.77 Aligned_cols=152 Identities=24% Similarity=0.361 Sum_probs=118.4
Q ss_pred cccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCC-CCCcCCCcceEEE
Q 018138 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDIGTGFGHFG 188 (360)
Q Consensus 110 ~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~-~~~~~g~g~~hi~ 188 (360)
...+.+..|.|.|+|++++..||+++||+++..+.+. .+-+..+.. ..|.|.+.+.. .......|+.|++
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg~---~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGGT---PLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCCE---EEEEEEeCCCCCCCCccccceeeee
Confidence 4567889999999999999999999999999876542 355665533 45666664332 2224567999999
Q ss_pred EEECC---HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCCC------------------------
Q 018138 189 IAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT------------------------ 241 (360)
Q Consensus 189 f~V~D---ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~~------------------------ 241 (360)
|.+++ +.+++.++...|..+.. . .++.....+||.||+||.||++..++.
T Consensus 77 fLlP~r~~L~~~l~hl~~~~~~l~G-a--~DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~ 153 (265)
T COG2514 77 FLLPTREDLARVLNHLAEEGIPLVG-A--SDHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLE 153 (265)
T ss_pred eecCCHHHHHHHHHHHHhcCCcccc-c--CcchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhh
Confidence 99985 88889999999998762 2 334445579999999999999987541
Q ss_pred ------------CCCceeceeeecCHHHHHHHhhhcceEEeeeccCCC
Q 018138 242 ------------PEPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK 277 (360)
Q Consensus 242 ------------~~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~ 277 (360)
...|+||+|.|.|++++.+||++ .|||+....
T Consensus 154 ~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~----~LG~~~~~~ 197 (265)
T COG2514 154 EATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYED----VLGLEVTAR 197 (265)
T ss_pred hccccccccCCCCcEEeEEEEEeCCHHHHHHHHHH----hcCCeeeec
Confidence 23689999999999999999999 999976543
No 11
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.78 E-value=1e-17 Score=146.54 Aligned_cols=129 Identities=35% Similarity=0.655 Sum_probs=101.2
Q ss_pred cccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCC---------------ceEEEEEEecCC
Q 018138 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPED---------------SHFVVELTYNYG 174 (360)
Q Consensus 110 ~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~lel~~~~~ 174 (360)
+.--++.|++|+|+|++++++||+++|||++..+...++.+++.+|+.+++.. ....|||.++..
T Consensus 23 ~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~ 102 (185)
T PLN03042 23 TKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWG 102 (185)
T ss_pred CCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCC
Confidence 34578999999999999999999999999999887777777888888754311 134789987543
Q ss_pred CCC------Cc----CCCcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 175 VDK------YD----IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 175 ~~~------~~----~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
... +. .+.|+.|++|.|+|+++++++|+++|+.+...|.... + ..++|++||||+.|||++...
T Consensus 103 ~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~-~-~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 103 TESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK-M-KGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred CcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC-c-eeEEEEECCCCCEEEEEECCC
Confidence 221 21 1248999999999999999999999999987664322 2 446888999999999999664
No 12
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.77 E-value=2.9e-17 Score=133.20 Aligned_cols=120 Identities=53% Similarity=0.923 Sum_probs=92.5
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCC-CCCcCCCcceEEEEEECC
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDIGTGFGHFGIAVED 193 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~-~~~~~g~g~~hi~f~V~D 193 (360)
+.||+|.|+|++++.+||+++|||++..+...++..+..+++..+....+..+++...... .....+.+..|++|.++|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999987655444456667777654112446666653322 222344578999999999
Q ss_pred HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEe
Q 018138 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (360)
Q Consensus 194 ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~ 236 (360)
+++++++++++|+++..+|... .+ ..++||+||+|+.+|++
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~~-~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-GM-KGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-CC-ceEEEEECCCCCEEEeC
Confidence 9999999999999999887765 33 34689999999999985
No 13
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=2.5e-17 Score=137.98 Aligned_cols=123 Identities=26% Similarity=0.322 Sum_probs=91.5
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCC-----------CCeEEEEEeeCCCCceEEEEEEecCCCCC---
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYNYGVDK--- 177 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~lel~~~~~~~~--- 177 (360)
+.+++||+|.|+|++++.+||++ |||++..+...++ .....+++.... ....+++.....+..
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCc
Confidence 46899999999999999999998 9999875533221 123445555322 245688776322111
Q ss_pred ----CcCCCcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 178 ----YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 178 ----~~~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
...+.|+.|+||.|+|+++++++|+++|+++..++....++. +.+|++||||+.|||+|.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~-r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSY-RLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCe-EEEEEECCCCCEEEeeec
Confidence 123457899999999999999999999999988776655554 469999999999999984
No 14
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.75 E-value=1.1e-17 Score=142.45 Aligned_cols=119 Identities=26% Similarity=0.378 Sum_probs=91.4
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCC-CCCeEEEEEeeCCCC---ceEEEEEEecCCCCCCcCCCcceEEEE
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP-EDRYTNAFLGYGPED---SHFVVELTYNYGVDKYDIGTGFGHFGI 189 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~---~~~~lel~~~~~~~~~~~g~g~~hi~f 189 (360)
+|+||+|.|+|++++++||+++|||++..+...+ ......+|+.+++.. .++.+.+.. ..+.+++|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999997654433 233456777764321 111222221 11458999999
Q ss_pred EECCHHHHH---HHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 190 AVEDVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 190 ~V~Dld~~~---~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
+|+|++++. ++|+++|+++.++|+.+..+...++|++||+||.|||+...
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999986 99999999999888877666666789999999999999765
No 15
>PRK11478 putative lyase; Provisional
Probab=99.75 E-value=4.9e-17 Score=133.67 Aligned_cols=123 Identities=21% Similarity=0.296 Sum_probs=86.4
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCC-CCeEEEEEeeCCCCceEEEEEEecCCC---CCCcCCCcceE
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-DRYTNAFLGYGPEDSHFVVELTYNYGV---DKYDIGTGFGH 186 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~lel~~~~~~---~~~~~g~g~~h 186 (360)
.+.+++||+|.|+|++++++||+++|||++..+...+. ..+. ..+..+. +..+++...... .......|+.|
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~h 78 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALNG---QYVIELFSFPFPPERPSRPEACGLRH 78 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecCC---CcEEEEEEecCCCCCCCCCCCCceeE
Confidence 46789999999999999999999999999864322111 1111 1222221 346776642211 11122357899
Q ss_pred EEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 187 i~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
++|.|+|+++++++|+++|+++...+....+|. .++||+||||+.|||++.
T Consensus 79 i~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~-~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 79 LAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQK-RFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEEEeCCHHHHHHHHHHcCCeeeccccCCCCCC-EEEEEECCCCCEEEEEeC
Confidence 999999999999999999999865433333443 478999999999999873
No 16
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=6.9e-17 Score=132.70 Aligned_cols=115 Identities=46% Similarity=0.897 Sum_probs=89.4
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCC-----------CCeEEEEEeeCCCCceEEEEEEecCCCCCCcCC
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIG 181 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g 181 (360)
.++.|++|+|+|+++|++||+++|||++..+.++++ ..+..+++.+++...+..+||.++.+...+..|
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 368999999999999999999999999988766654 344456676654455678999987665555555
Q ss_pred CcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 182 TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 182 ~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
.+ |++|.|++. ++.++|+++|+++...|. + +++++||||+.|||+.
T Consensus 81 ~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 ND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred CC--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 55 677777776 456999999999886544 2 6899999999999975
No 17
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.75 E-value=6.4e-17 Score=136.22 Aligned_cols=119 Identities=17% Similarity=0.252 Sum_probs=88.9
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCC-eEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEE
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDR-YTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 189 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f 189 (360)
.+++|+||+|.|+|++++.+||+++|||++..+...++.. ...+|+..+.. ++.+.+... ++.+++|++|
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~~-------~~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVGG-------PDGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEecC-------CCCCceEEEE
Confidence 4678999999999999999999999999987664332221 23456665433 344554332 1247899999
Q ss_pred EECCHHH---HHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 190 AVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 190 ~V~Dld~---~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
.|+|+++ +.++|+++|+++..+|.++..+....+||.|||||.|||+..
T Consensus 74 ~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 74 FLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 9999777 578999999998877766553333469999999999999864
No 18
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.74 E-value=6.8e-17 Score=131.48 Aligned_cols=119 Identities=24% Similarity=0.387 Sum_probs=88.7
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC---CcCCCcceEEEEE
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YDIGTGFGHFGIA 190 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~---~~~g~g~~hi~f~ 190 (360)
+++||+|.|+|++++++||+++|||++..+...+...+..+|+..++ ...+++.+...... .....|+.|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57999999999999999999999999865543333444556776642 24577765332211 1233578999999
Q ss_pred EC---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEe
Q 018138 191 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (360)
Q Consensus 191 V~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~ 236 (360)
|+ |+++++++|+++|+++..+|...++|.+ .++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~-~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYY-ESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeE-EEEEECCCCCEEEeC
Confidence 96 4899999999999999887765555543 477999999999983
No 19
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.73 E-value=1.7e-16 Score=131.98 Aligned_cols=118 Identities=25% Similarity=0.324 Sum_probs=91.2
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEEC
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 192 (360)
.+|+||+|.|+|++++++||+++|||++..+.. . ..+|+..+....++.+.+..... ...+++|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 589999999999999999999999999875432 1 24677665333355676654322 1358999999999
Q ss_pred CHHHHH---HHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 193 DVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 193 Dld~~~---~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
|++++. ++|+++|+++..+|...+.++..++||+||+|+.|||.....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 877765 699999999887777666555557899999999999997543
No 20
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.73 E-value=1.5e-16 Score=129.66 Aligned_cols=116 Identities=28% Similarity=0.321 Sum_probs=86.1
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEE
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 191 (360)
+++|+||.|.|+|++++++||+++|||++..+.. +. .+++.......++.+.+... ...++.|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 6799999999999999999999999999875431 11 24555432223345555321 124688999999
Q ss_pred C---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 192 ~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
+ |+++++++|+++|+++...|.....+....+||+|||||.||+++..
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 79999999999999988765443333234699999999999998754
No 21
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.72 E-value=2.1e-16 Score=135.98 Aligned_cols=127 Identities=28% Similarity=0.332 Sum_probs=90.1
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEe----eC--------------CCCCeEEEEEeeCCCCceEEEEEEecC
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKR----DI--------------PEDRYTNAFLGYGPEDSHFVVELTYNY 173 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~l~~g~~~~~~~lel~~~~ 173 (360)
.++++||+|.|+|++++++||+++|||++..+. .. ....+..+++..++ +..|++++..
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 368999999999999999999999999886321 00 01124566776543 3358887754
Q ss_pred CCCCCc-----CCCcceEEEEEECCHHHHHHHHHHcCCeEecCC-eec-CC-CCEEEEEEECCCCCEEEEeecCCC
Q 018138 174 GVDKYD-----IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREP-GPV-KG-GNTVIAFIEDPDGYKFELLERGPT 241 (360)
Q Consensus 174 ~~~~~~-----~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p-~~~-~~-g~~~~~~~~DPdG~~iEl~~~~~~ 241 (360)
...... .+.|+.|++|.|+|+++++++|+++|+++...+ ... +. .....+|++|||||.|||++....
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 322111 246899999999999999999999998764432 211 11 123579999999999999997653
No 22
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.72 E-value=2.8e-16 Score=131.05 Aligned_cols=120 Identities=21% Similarity=0.249 Sum_probs=90.8
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC------CcCCCcceEEE
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YDIGTGFGHFG 188 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~------~~~g~g~~hi~ 188 (360)
++|+.|.|+|++++++||+++|||++..+...+ .....++..+ ...+.+........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999998654322 1223444322 23566654222111 12456889999
Q ss_pred EEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCCC
Q 018138 189 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (360)
Q Consensus 189 f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~~ 241 (360)
|.|+|+++++++|+++|+++..+|...+++ .+.++++||||+.|||++....
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~-~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGE-LKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCe-EEEEEEeccCCcEEEEEecCCC
Confidence 999999999999999999999988875555 4579999999999999997764
No 23
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=2.7e-16 Score=127.70 Aligned_cols=120 Identities=32% Similarity=0.427 Sum_probs=85.8
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCC-CeEEEEEeeCCCCceEEEEEEecCCC---CCCcCCCcceEEE
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-RYTNAFLGYGPEDSHFVVELTYNYGV---DKYDIGTGFGHFG 188 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~lel~~~~~~---~~~~~g~g~~hi~ 188 (360)
.+++||+|.|+|++++++||+++|||++..+...++. .+. ..+... . ...+++...... .....+.|++|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~-~~~~~~-~--~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYK-LDLLLN-G--GYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEE-EEEecC-C--CcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 5899999999999999999999999999765332221 222 222221 1 234555432211 1112345789999
Q ss_pred EEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 189 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 189 f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
|.|+|+++++++|+++|+++..++....++. .++|++||+|+.|||+|
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVDEFTGK-RFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCccccccccCCCce-EEEEEECCCCCEEEecC
Confidence 9999999999999999999887664444443 46999999999999975
No 24
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.71 E-value=4.1e-16 Score=130.51 Aligned_cols=118 Identities=23% Similarity=0.410 Sum_probs=89.5
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEE
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 190 (360)
|+.+|+||.|.|+|++++++||+++|||++..+.. ..+++..+. ..+.+......+....+.++.|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g----~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG----LWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC----eEEEeeccCCCCCccCCCCeeEEEEE
Confidence 57889999999999999999999999999975421 235665432 34555433222222234467899999
Q ss_pred EC--CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 191 VE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 191 V~--Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
++ |+++++++++++|+++..+|....++. +.+||+|||||.|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~-~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDK-KSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCc-eEEEEECCCCCEEEEEeCC
Confidence 98 899999999999999887766665554 4699999999999998755
No 25
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.70 E-value=5.7e-16 Score=132.07 Aligned_cols=124 Identities=23% Similarity=0.342 Sum_probs=94.5
Q ss_pred ccccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCC---CCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcce
Q 018138 109 KSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP---EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFG 185 (360)
Q Consensus 109 ~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~ 185 (360)
.+..++|+||+|.|+|++++++||+++|||++....... +.....+|+..++. ++.+.+.... .+.+++
T Consensus 4 ~~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~~------~~~g~~ 75 (154)
T cd07237 4 VTGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEGP------GPKRIH 75 (154)
T ss_pred ccCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcCC------CCceeE
Confidence 356789999999999999999999999999987653321 11345677776432 3345554321 135799
Q ss_pred EEEEEECCH---HHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 186 HFGIAVEDV---AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 186 hi~f~V~Dl---d~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
|++|.|+|+ ++++++|+++|+++..++..++.++...+|++||+|+.|||.....
T Consensus 76 Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 76 HLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 999999874 5689999999999988877766555567999999999999987654
No 26
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.69 E-value=4.5e-16 Score=146.03 Aligned_cols=160 Identities=22% Similarity=0.303 Sum_probs=110.4
Q ss_pred cccchhHHHHhhCccccccccCCCCCCCccccccccccccccccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCC
Q 018138 69 FGAKALKLLRAEGSTIEASTSGNMAPTSNTVTEQNVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE 148 (360)
Q Consensus 69 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~ 148 (360)
.+++...+.+|+|+.+|+.++...........+.....+ ...+.+|+||+|.|+|++++.+||+++|||++..+...+.
T Consensus 98 ~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~ 176 (286)
T TIGR03213 98 GVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGF-VTGDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPA 176 (286)
T ss_pred cceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCcc-ccCCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccC
Confidence 445667889999999998765432211111111111112 3457899999999999999999999999999876532221
Q ss_pred --C-CeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCHHH---HHHHHHHcCCeEecCCeecCCCCEEE
Q 018138 149 --D-RYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVI 222 (360)
Q Consensus 149 --~-~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dld~---~~~rL~~~G~~~~~~p~~~~~g~~~~ 222 (360)
+ .+..+|+.+++. ++.+.+.... ...+++|++|+|+|+++ +.++|+++|+ ....|..+..++..+
T Consensus 177 ~~g~~~~~~~l~~~~~--~~~~~l~~~~------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~ 247 (286)
T TIGR03213 177 GPGVTVRPYFLHCNER--HHSLAFAAGP------SEKRLNHLMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVS 247 (286)
T ss_pred CCCCcceEEEEEECCC--cceEEEecCC------CCCceEEEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEE
Confidence 1 124577776543 3445554321 23479999999998666 7999999999 666666665555668
Q ss_pred EEEECCCCCEEEEeec
Q 018138 223 AFIEDPDGYKFELLER 238 (360)
Q Consensus 223 ~~~~DPdG~~iEl~~~ 238 (360)
+|++||+|+.||+...
T Consensus 248 ~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 248 FYVATPSGWLVEYGWG 263 (286)
T ss_pred EEEECCCCcEEEeecC
Confidence 9999999999999873
No 27
>PLN02300 lactoylglutathione lyase
Probab=99.69 E-value=5.5e-16 Score=145.53 Aligned_cols=147 Identities=47% Similarity=0.796 Sum_probs=112.6
Q ss_pred HHHHhhCccccccccCCCCCCCccccccccccccccccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEE
Q 018138 75 KLLRAEGSTIEASTSGNMAPTSNTVTEQNVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNA 154 (360)
Q Consensus 75 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~ 154 (360)
-+.+|+|+.+|+.... ....++.|+.|.|+|++++.+||+++|||++..+...++..|..+
T Consensus 134 ~~~DPdG~~iEl~~~~-------------------~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~ 194 (286)
T PLN02300 134 FVKDPDGYKFELIQRG-------------------PTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIA 194 (286)
T ss_pred EEECCCCCEEEEEeCC-------------------CCCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEE
Confidence 3468889999984321 123467788899999999999999999999986555455567777
Q ss_pred EEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEE
Q 018138 155 FLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFE 234 (360)
Q Consensus 155 ~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iE 234 (360)
++.+++......+++....+..++..+++.+|++|.|+|+++++++++++|+++..+|...++.+...++|+||||+.++
T Consensus 195 ~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~ 274 (286)
T PLN02300 195 MMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTV 274 (286)
T ss_pred EEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEE
Confidence 77654333334566655443333445678999999999999999999999999999888877644446889999999999
Q ss_pred EeecCC
Q 018138 235 LLERGP 240 (360)
Q Consensus 235 l~~~~~ 240 (360)
|++...
T Consensus 275 ~~~~~~ 280 (286)
T PLN02300 275 FVDNID 280 (286)
T ss_pred EEccch
Confidence 998753
No 28
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.69 E-value=4.7e-16 Score=127.26 Aligned_cols=119 Identities=32% Similarity=0.541 Sum_probs=87.5
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC----C--cCCCcceEE
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK----Y--DIGTGFGHF 187 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~----~--~~g~g~~hi 187 (360)
+++|++|.|+|++++++||+++|||++......++.+...+++..++ ..+++.+...... + ..+.++.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 57899999999999999999999999976543334345566666542 2566654321110 0 124578899
Q ss_pred EEEECCHHHHHHHHHHcCCeEecC-CeecCCCCEEEEEE--ECCCCCEEEEee
Q 018138 188 GIAVEDVAKTVDLVKAKGGKVTRE-PGPVKGGNTVIAFI--EDPDGYKFELLE 237 (360)
Q Consensus 188 ~f~V~Dld~~~~rL~~~G~~~~~~-p~~~~~g~~~~~~~--~DPdG~~iEl~~ 237 (360)
+|.|+|+++++++|+++|+++..+ |....+|. ..+|+ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~-~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGGK-PVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCCC-EEEEecccccCcEEEEecC
Confidence 999999999999999999998764 55444553 35666 799999999975
No 29
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.69 E-value=1.3e-15 Score=130.88 Aligned_cols=119 Identities=25% Similarity=0.393 Sum_probs=85.4
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEE
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 191 (360)
.++|+||+|.|+|++++++||+++|||++......+.......++..+.. ++.+.+... .+.+++|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~~-------~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTGG-------NGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEecC-------CCCceeEEEEEc
Confidence 36899999999999999999999999998755433233333456654322 334554432 234789999999
Q ss_pred CC---HHHHHHHHHHcCCe--EecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 192 ED---VAKTVDLVKAKGGK--VTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 192 ~D---ld~~~~rL~~~G~~--~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
+| +++++++|+++|+. +..+|..+..++..++|++|||||.||+++..
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 86 88889999999986 33445443333344699999999999999754
No 30
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.69 E-value=9.3e-16 Score=124.89 Aligned_cols=115 Identities=21% Similarity=0.291 Sum_probs=86.0
Q ss_pred cccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEE
Q 018138 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 189 (360)
Q Consensus 110 ~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f 189 (360)
+.+.+|+|++|.|+|++++++||+++|||++..+.+ ..+|+...+...++.+.+... ...++.|++|
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af 68 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAW 68 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEE
Confidence 467899999999999999999999999999986532 135665543323455665432 1247899999
Q ss_pred EEC---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 190 AVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 190 ~V~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
.|+ |+++++++++++|+++...+.....+ ..+||+|||||.+|++...
T Consensus 69 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 69 RASSPEALERRVAALEASGLGIGWIEGDPGHG--KAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EcCCHHHHHHHHHHHHHcCCccccccCCCCCc--ceEEEECCCCCEEEEEEec
Confidence 997 58899999999999875433322223 3589999999999998754
No 31
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.68 E-value=8.3e-16 Score=145.34 Aligned_cols=158 Identities=17% Similarity=0.238 Sum_probs=107.8
Q ss_pred ccchhHHHHhhCccccccccCCCCCCCccccccccc----cccccccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEee
Q 018138 70 GAKALKLLRAEGSTIEASTSGNMAPTSNTVTEQNVL----DWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRD 145 (360)
Q Consensus 70 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~ 145 (360)
+++...+.+++|+.+|+.+....... .....+.. .+..+.+++|+||+|.|+|++++++||+++|||++..+..
T Consensus 99 ~g~~~~~~DPdG~~iEl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~ 176 (303)
T TIGR03211 99 VGRRVRFTLPSGHTMELYAEKEYVGE--LVGGLNPDPWPDPLRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVV 176 (303)
T ss_pred cceEEEEECCCCCEEEEEEccccccc--cccccCCcccccccCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEE
Confidence 34567788999999999765543211 00111111 1223457899999999999999999999999999876544
Q ss_pred CCCCCe-EEEEEeeCCCCceEEEEEEecCCCCCCcCCCc-ceEEEEEECC---HHHHHHHHHHcCCeEecCCeecCCCCE
Q 018138 146 IPEDRY-TNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG-FGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNT 220 (360)
Q Consensus 146 ~~~~~~-~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g-~~hi~f~V~D---ld~~~~rL~~~G~~~~~~p~~~~~g~~ 220 (360)
.+.... ...|+..+.. ++.+.+... .+.| ++|+||.|+| +++++++|+++|+++..+|..+..+..
T Consensus 177 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~ 247 (303)
T TIGR03211 177 LGDGKEQAAAWLSVSNK--AHDIAFVGD-------PEPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRG 247 (303)
T ss_pred cCCCcEEEEEEEEcCCC--CcccceecC-------CCCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCc
Confidence 333322 3456654332 223333221 1234 8999999986 566788999999999888876654444
Q ss_pred EEEEEECCCCCEEEEeec
Q 018138 221 VIAFIEDPDGYKFELLER 238 (360)
Q Consensus 221 ~~~~~~DPdG~~iEl~~~ 238 (360)
.++||+||+||.||+...
T Consensus 248 ~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 248 QTIYFFDPSGNRNETFGG 265 (303)
T ss_pred eEEEEECCCCCEEEEecC
Confidence 579999999999999843
No 32
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.67 E-value=8.7e-16 Score=144.52 Aligned_cols=158 Identities=23% Similarity=0.297 Sum_probs=109.2
Q ss_pred cccchhHHHHhhCccccccccCCCCCCCccccccccccccccccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCC
Q 018138 69 FGAKALKLLRAEGSTIEASTSGNMAPTSNTVTEQNVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE 148 (360)
Q Consensus 69 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~ 148 (360)
.+++...+.+++|+.+|+.......... ......+....+++|+||+|.|+|++++++||+++|||++..+...+.
T Consensus 95 ~~~~~~~~~DPdG~~iEl~~~~~~~~~~----~~~~~~~~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~ 170 (294)
T TIGR02295 95 GQPEALRVEDPFGYPIEFYFEMEKVERL----LRRYHRHRGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDE 170 (294)
T ss_pred CCceEEEEECCCCCEEEEEEchhhcccc----cccccccCCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCC
Confidence 4456677889999999997654322100 000000112357899999999999999999999999999976643333
Q ss_pred CCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECC---HHHHHHHHHHcCCe--EecCCeecCCCCEEEE
Q 018138 149 DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED---VAKTVDLVKAKGGK--VTREPGPVKGGNTVIA 223 (360)
Q Consensus 149 ~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D---ld~~~~rL~~~G~~--~~~~p~~~~~g~~~~~ 223 (360)
+.....|+..+. .++.+.+... .+.+++|+||+|+| +++++++|+++|++ +..+|..+..+...++
T Consensus 171 ~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~ 241 (294)
T TIGR02295 171 GNLAAAWLHRKG--GVHDIALTNG-------NGPRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFL 241 (294)
T ss_pred CcEEEEEEecCC--CcCceEeecC-------CCCceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEE
Confidence 333445654432 2334444321 23579999999998 55678999999998 6667766555555579
Q ss_pred EEECCCCCEEEEeecC
Q 018138 224 FIEDPDGYKFELLERG 239 (360)
Q Consensus 224 ~~~DPdG~~iEl~~~~ 239 (360)
|++||+|+.||++...
T Consensus 242 y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 242 YLRDPDGHRIELYTGD 257 (294)
T ss_pred EEECCCCCEEEEEecc
Confidence 9999999999999754
No 33
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.67 E-value=2.5e-15 Score=129.73 Aligned_cols=124 Identities=22% Similarity=0.347 Sum_probs=91.4
Q ss_pred cccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEE
Q 018138 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 189 (360)
Q Consensus 110 ~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f 189 (360)
+.+.+|+|++|.|+|++++++||+++|||++......+.......|+..... ++.+.+..... ....+++|++|
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK--VHDVAYTRDPA----GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC--ceeEEEecCCC----CCCCCceEEEE
Confidence 4578999999999999999999999999998765433333334466665432 23444433211 11236899999
Q ss_pred EECC---HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 190 AVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 190 ~V~D---ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
.|+| +++++++|+++|+++..+|.....+...++|+.||+|+.||++...
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 9985 5588999999999987777665554444689999999999999874
No 34
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.67 E-value=1.6e-15 Score=127.45 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=88.7
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECC--
Q 018138 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED-- 193 (360)
Q Consensus 116 ~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D-- 193 (360)
.||.|.|+|++++++||+++|||++..+... ..+|+.......++.+.+... ...+++|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~~-------~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGPA-------SSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeeccC-------CCCceEEEEEECCCHH
Confidence 4999999999999999999999998765321 357887654333455544321 23489999999986
Q ss_pred -HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 194 -VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 194 -ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
+++++++|+++|+++..+|..+..+....+|++||+|+.||+.....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 56779999999999988888777555567999999999999987664
No 35
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.67 E-value=5.7e-16 Score=126.03 Aligned_cols=120 Identities=28% Similarity=0.404 Sum_probs=86.9
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeC--CCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcC---CCcceEEE
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDI--PEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDI---GTGFGHFG 188 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~--~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~---g~g~~hi~ 188 (360)
||+||+|.|+|++++++||+++|||++...... ........++..+.. ++.+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG--HIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS--CEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc--ceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999987662 222334455554433 34444443322221111 01346777
Q ss_pred EEEC---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEE
Q 018138 189 IAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (360)
Q Consensus 189 f~V~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl 235 (360)
+.+. |+++++++|++.|+++..+|.....+....+|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 7665 6888999999999999999888887777667899999999997
No 36
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.66 E-value=1.8e-15 Score=122.99 Aligned_cols=115 Identities=27% Similarity=0.359 Sum_probs=85.4
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEE
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 190 (360)
+++++.|+.|.|+|++++++||+++|||++..+.+ ..+++.......++.+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 36799999999999999999999999999975421 135555322223344555432 12468899999
Q ss_pred EC---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 191 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 191 V~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
|. |+++++++++++|+++...|.....+....+|+.||||+.||++..
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 94 7999999999999998776444444433469999999999999865
No 37
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.65 E-value=4.3e-15 Score=120.98 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=84.9
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEEC
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 192 (360)
.+|.||+|.|+|++++++||+++|||++..+.. . ..+++..++ .++.+.+.... ..++.|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~--~~~~~~l~~~~-------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDD--RAWRIAVHPGE-------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccC--CceEEEEEeCC-------CCceeEEEEEEC
Confidence 378999999999999999999999999865421 1 236666543 24566665432 236789999997
Q ss_pred ---CHHHHHHHHHHcCCeEecCCeec--CCCCEEEEEEECCCCCEEEEeecC
Q 018138 193 ---DVAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 193 ---Dld~~~~rL~~~G~~~~~~p~~~--~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
|+++++++|+++|+++...|... ..+...++||+|||||.||++...
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 49999999999999998765322 223334799999999999998754
No 38
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=6e-15 Score=119.71 Aligned_cols=118 Identities=29% Similarity=0.455 Sum_probs=86.1
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCC---CCCcCCCcceEEE
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV---DKYDIGTGFGHFG 188 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~---~~~~~g~g~~hi~ 188 (360)
+++|+|+.|.|+|++++++||+++|||++..+.+.. . ...+..++ ..+++...... .....+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~--~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--G--RKALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--C--ceEEEeCC----EEEEEecCCCccCcCccCCCCCCceEE
Confidence 468999999999999999999999999997653211 1 23444442 24555543221 1122446789999
Q ss_pred EEECC-HHHHHHHHHHcCCeEecCCeecCC--CCEEEEEEECCCCCEEEEee
Q 018138 189 IAVED-VAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 189 f~V~D-ld~~~~rL~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~iEl~~ 237 (360)
|.+++ +++++++|+++|+++..+|....+ +....+||+||||+.+|+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99975 999999999999998877754322 22346899999999999975
No 39
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.65 E-value=5.9e-15 Score=122.24 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=83.5
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCC-eEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEE
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDR-YTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 189 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f 189 (360)
|+.+|+||+|.|+|++++++||+++|||++..+....... ....++..+. ..+++...... ...+++|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~----~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG----LWIAIMEGDSL----QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC----eEEEEecCCCC----CCCCceEEEE
Confidence 5779999999999999999999999999886543211000 0011222221 24566532211 1236899999
Q ss_pred EEC--CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 190 AVE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 190 ~V~--Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
.|+ |+++++++|+++|+++..+. ....+..+.+||+|||||.+||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 998 79999999999999876433 22333334799999999999998654
No 40
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.65 E-value=5.5e-15 Score=126.45 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=85.9
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC-CcCCCcceEEEEEEC
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVE 192 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~-~~~g~g~~hi~f~V~ 192 (360)
+|+||+|.|+|++++++||+++|||++..+.. . ...++..+. ..++.|++........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 58999999999999999999999999976532 1 223333321 2345778776432211 122347899999999
Q ss_pred C---HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 193 D---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 193 D---ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
| +++++++|+++|+.+.. +... +..+.+||+||+|+.||++...+
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~--~~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDR--FYFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cccc--ccEEEEEEECCCCcEEEEEECCC
Confidence 8 99999999999998643 3322 33457999999999999998764
No 41
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.65 E-value=5.8e-15 Score=118.58 Aligned_cols=114 Identities=24% Similarity=0.233 Sum_probs=84.5
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCH
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDV 194 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dl 194 (360)
+.||.|.|+|++++++||+++||+++..... +.. ..+++..++. ..+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGGG---AVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCCc---cEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999975442 112 2345554431 233444322211 1233567999999999
Q ss_pred HHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 195 d~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
++++++|+++|+++..+|...++++ ..++++|||||.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVG-RFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcE-EEEEEECCCCCEEEeEC
Confidence 9999999999999998887766454 47999999999999975
No 42
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.65 E-value=4.1e-15 Score=121.99 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=85.4
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEE
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 190 (360)
++.+|.||.|.|+|++++.+||+++|||++..+.. ...|+..+.. ++.+.+.... .+..|++|+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~--~~~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDAR--DHTLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCc--cEEEEEEeCC--------CceEEEEEE
Confidence 46899999999999999999999999999864421 1467766432 3455554321 246799999
Q ss_pred ECC---HHHHHHHHHHcCCeEecCCeecC--CCCEEEEEEECCCCCEEEEeecC
Q 018138 191 VED---VAKTVDLVKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 191 V~D---ld~~~~rL~~~G~~~~~~p~~~~--~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
|+| +++++++++++|+++...+.... .+...++||+|||||.||++...
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 975 99999999999999876554221 23334689999999999998755
No 43
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=1.1e-14 Score=118.78 Aligned_cols=118 Identities=25% Similarity=0.423 Sum_probs=87.6
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCC-CCCcCCCcceEEEEEE
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDIGTGFGHFGIAV 191 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~-~~~~~g~g~~hi~f~V 191 (360)
++|+||+|.|+|++++++||+++|||++..+.+ ..+++..++ ....+.+...... .......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 589999999999999999999999999986521 135665543 2456666654332 1122345789999999
Q ss_pred C---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCCC
Q 018138 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (360)
Q Consensus 192 ~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~~ 241 (360)
+ ++++++++|+++|+++..+ ..... ...+|+.|||||.+|+....+.
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~~~--~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDHLV--SEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccccc--eeEEEEECCCCCEEEEEEecCc
Confidence 7 4999999999999987543 22222 3468999999999999987653
No 44
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.64 E-value=6e-15 Score=120.01 Aligned_cols=120 Identities=23% Similarity=0.326 Sum_probs=84.2
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCC-CeEEEEEeeCCCCceEEEEEEecCCCCC--CcCCCcceEEEEE
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-RYTNAFLGYGPEDSHFVVELTYNYGVDK--YDIGTGFGHFGIA 190 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~lel~~~~~~~~--~~~g~g~~hi~f~ 190 (360)
+|+||+|.|.|++++++||+++|||++..+....+. .....++.......+..+++........ .....++.|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 578999999999999999999999998876543221 1122334332112234677765433221 1223467899999
Q ss_pred EC---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEe
Q 018138 191 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (360)
Q Consensus 191 V~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~ 236 (360)
|+ |+++++++++++|+++...+.. .+ ...+||+||+|+.|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~-~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH--FG-ERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee--cc-eEEEEEECCCCCEEEeC
Confidence 98 4799999999999998764432 33 34689999999999985
No 45
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.64 E-value=8.1e-15 Score=121.23 Aligned_cols=116 Identities=30% Similarity=0.448 Sum_probs=89.0
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCH-
Q 018138 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDV- 194 (360)
Q Consensus 116 ~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dl- 194 (360)
+||.|.|+|++++++||+++||+++..+...+ .....+|+..++. ++.+.+..... ..++.|++|.|+|+
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~~------~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGPE------RPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCCC------CCCeeEEEEEcCCHH
Confidence 59999999999999999999999997664433 3335677776532 34566554321 34789999999986
Q ss_pred --HHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 195 --AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 195 --d~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
++++++++++|+++..+|...+.+...+++|+||+|+.|||++..+
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 4789999999999988776655444457899999999999998765
No 46
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.64 E-value=4.3e-15 Score=123.09 Aligned_cols=114 Identities=22% Similarity=0.373 Sum_probs=83.0
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEEC--
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE-- 192 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~-- 192 (360)
|+||.|.|+|++++++||+++|||++..+.. . .+++..+. ..+.+...+..+......++.|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~--~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----K--TAYFTIGG----TWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----c--cceEeeCc----eEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999874321 1 24555432 3455544332221122347889999997
Q ss_pred CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 193 DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 193 Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
|+++++++|+++|+++..++....++++ .+||.|||||.||+.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~-~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRK-SIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcce-EEEEECCCCCEEEEecCc
Confidence 4999999999999998765554444444 699999999999998754
No 47
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=7.9e-15 Score=117.82 Aligned_cols=117 Identities=25% Similarity=0.308 Sum_probs=84.4
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCC--CCcCCCcceEEEEEECCH
Q 018138 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD--KYDIGTGFGHFGIAVEDV 194 (360)
Q Consensus 117 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~--~~~~g~g~~hi~f~V~Dl 194 (360)
||+|.|.|++++.+||+++|||++..+..... ....+++..... ....+.+....... ......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999987643222 222333332211 13456665433221 112345788999999999
Q ss_pred HHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 195 d~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
++++++|+++|+++..+|....++ ..+|++||+|+.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPYG--TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCCc--eEEEEECCCCCEEEEeC
Confidence 999999999999999887544433 46999999999999974
No 48
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.63 E-value=8.4e-15 Score=123.48 Aligned_cols=114 Identities=24% Similarity=0.432 Sum_probs=87.1
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEEC
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 192 (360)
.+|+||.|.|+|++++++||+++|||++..+.. . ...|+..+.. ++.+.+... ...++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCCC--cceEEEccC-------CCCceEEEEEECC
Confidence 489999999999999999999999999875422 1 2467776543 334555432 1246889999999
Q ss_pred CHHHHH---HHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 193 DVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 193 Dld~~~---~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
|++++. ++|+++|+++...+.....+...++||+||+|+.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 877764 899999999887765544444456899999999999998754
No 49
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.63 E-value=4.7e-15 Score=117.80 Aligned_cols=113 Identities=28% Similarity=0.359 Sum_probs=83.8
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC-CcCCCcceEEEEEECC
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVED 193 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~-~~~g~g~~hi~f~V~D 193 (360)
|+|++|.|+|++++++||+++|||++..+...+ ...+++..++. ..+++........ ...+.+..|++|+|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 689999999999999999999999987543322 12356665443 2456654433221 1223467899999999
Q ss_pred HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEE
Q 018138 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (360)
Q Consensus 194 ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl 235 (360)
+++++++++++|+++..++.. .++.+ .+++.||+|+.+||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~~~-~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDGVR-QLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCCcc-EEEEECCCCCEEeC
Confidence 999999999999998887654 33433 58999999999996
No 50
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.63 E-value=7.2e-15 Score=119.97 Aligned_cols=119 Identities=31% Similarity=0.532 Sum_probs=88.4
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCC-CCCeEEEEEeeCCCCceEEEEEEecCCCC-C-----CcCCCcceEE
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP-EDRYTNAFLGYGPEDSHFVVELTYNYGVD-K-----YDIGTGFGHF 187 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~lel~~~~~~~-~-----~~~g~g~~hi 187 (360)
|+||.|.|+|++++.+||+++|||++....... +.....+++..+ ...+++..+.... . ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997654432 233456677643 3467776543211 1 1245789999
Q ss_pred EEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCC--CCEEEEee
Q 018138 188 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPD--GYKFELLE 237 (360)
Q Consensus 188 ~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPd--G~~iEl~~ 237 (360)
+|.|+|+++++++++++|+++..+|.....+++.++++.+|+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999999888764455555555555555 99999975
No 51
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.63 E-value=5.2e-14 Score=135.79 Aligned_cols=230 Identities=23% Similarity=0.310 Sum_probs=155.4
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCC--CCeEEEEEeeCCCCceEEEEEEecCCC-----------------
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE--DRYTNAFLGYGPEDSHFVVELTYNYGV----------------- 175 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~lel~~~~~~----------------- 175 (360)
++||.+.|.|.+++..||+..|||+.+.+..... .......++-| ...+.+..+...
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccccccccccc
Confidence 5899999999999999999999999987654211 11222333322 223333332111
Q ss_pred --CC------CcCCCcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCC----CCEEEEEEECCCCCEEEEeecCC---
Q 018138 176 --DK------YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG----GNTVIAFIEDPDGYKFELLERGP--- 240 (360)
Q Consensus 176 --~~------~~~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~----g~~~~~~~~DPdG~~iEl~~~~~--- 240 (360)
.. ..+|.++.-++|+|+|++++++++.++|++...+|....+ |...+.-+..++|..+.|+++..
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 00 1256889999999999999999999999998887766533 23345567778888888886421
Q ss_pred ------------C--------CCCceeceeeecCHHHHHHHhhhcceEEeeeccC----C--Cc----------------
Q 018138 241 ------------T--------PEPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPE----D--KN---------------- 278 (360)
Q Consensus 241 ------------~--------~~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~----~--~~---------------- 278 (360)
. -.+|+||++.|.+++++..||++ +|||... . ..
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~----vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g 232 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAG----FTGFHEFAEFTAEDVGTVDSGLNSMVLASNNE 232 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHH----hcCCeeeeeeccccccccccceEEEEEEcCCC
Confidence 0 12699999999999999999999 9998532 1 00
Q ss_pred -cEEEEEEeC-C--c-c------cccCCCCeeEEEEEeCCHHHHHHHHHHc----CCeEeeCC-c--------ccCC---
Q 018138 279 -AVLELTYNH-G--V-T------EYDKGNGYAQIAIGTDDVYKTAEAIKLS----GGKITREP-G--------PLPG--- 331 (360)
Q Consensus 279 -~~l~l~~~~-~--~-~------~~~~g~g~~hiaf~V~Dl~~~~~~l~~~----G~~i~~~p-~--------~~~~--- 331 (360)
..+.|.... + . . ....|+|++||||.|+||.+++++|+++ |+++...| . +.++
T Consensus 233 ~v~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~ 312 (398)
T PLN02875 233 MVLLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLT 312 (398)
T ss_pred cEEEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCC
Confidence 011111111 0 0 0 1234689999999999999999999999 99999855 1 1221
Q ss_pred -------CCcEEEEEECCCCCeEEEEcC
Q 018138 332 -------INTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 332 -------~~~~~~~~~DPdG~~iel~~~ 352 (360)
....+.+=+|.+|.++.++..
T Consensus 313 ~e~~~~L~~~~ILvD~d~~G~LLQIFTk 340 (398)
T PLN02875 313 EEQIKECEELGILVDKDDQGVLLQIFTK 340 (398)
T ss_pred hhhHHHHHHcCEEEecCCCceEEEEecc
Confidence 012355557777888777655
No 52
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.63 E-value=1.3e-14 Score=116.78 Aligned_cols=112 Identities=27% Similarity=0.441 Sum_probs=86.9
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEEC
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 192 (360)
++|+|+.|.|+|++++++||+++|||++..+.+ ..+|+..+. ..++.+.+.... ..+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~-------~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEGD-------EPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeCC-------CCCceeEEEEcC
Confidence 579999999999999999999999999986532 136666552 224455554421 246889999997
Q ss_pred ---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 193 ---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 193 ---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
++++++++++++|+++...|...+++++ .+|+.||+|+.+|++...
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGVGR-GLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCCce-EEEEECCCCCEEEEEEcc
Confidence 6899999999999999887764444444 689999999999998753
No 53
>PRK06724 hypothetical protein; Provisional
Probab=99.63 E-value=1.1e-14 Score=120.15 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=79.2
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhc---CCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEE
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECL---GMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 187 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi 187 (360)
|+.+|+||+|.|+|++++++||+++| ||+..... .+ . .+ ...+.+...... .....|..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~---------~~-~--~g--~~~l~l~~~~~~--~~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEV---------AY-S--TG--ESEIYFKEVDEE--IVRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE---------ee-e--CC--CeeEEEecCCcc--ccCCCCceeE
Confidence 67789999999999999999999966 66654211 11 1 11 112222211110 1123468899
Q ss_pred EEEE---CCHHHHHHHHHHcCCeEecCCeecCC--CCEEEEEEECCCCCEEEEeecC
Q 018138 188 GIAV---EDVAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 188 ~f~V---~Dld~~~~rL~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
||.| +|+|+++++|+++|+++..+|...+. ++.+.+||+||||+.||+...+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 9998 67999999999999999888765432 3345789999999999998764
No 54
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.62 E-value=2.2e-14 Score=117.61 Aligned_cols=117 Identities=22% Similarity=0.366 Sum_probs=86.2
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhc---CCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC---CcCCCcceEE
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECL---GMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YDIGTGFGHF 187 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~---~~~g~g~~hi 187 (360)
+|+||+|.|+|++++++||+++| ||++..+.. .. ..|... ..+..+.+.......+ ...+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG---DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec---CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999986542 11 133332 1235677766443221 1234578999
Q ss_pred EEEEC---CHHHHHHHHHHcCCeEecCCeec--CCCCEEEEEEECCCCCEEEEeec
Q 018138 188 GIAVE---DVAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 188 ~f~V~---Dld~~~~rL~~~G~~~~~~p~~~--~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
+|.|+ |+++++++|+++|+.+...+... ..++...+|++||||+.+||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 99997 48999999999999998876642 22334579999999999999864
No 55
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=1.5e-14 Score=117.54 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=81.0
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEe----cCCCCCCcCCCcceEEE
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTY----NYGVDKYDIGTGFGHFG 188 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~----~~~~~~~~~g~g~~hi~ 188 (360)
+++.|+.|.|+|++++.+||+++|||++..+.+ . . ..+..+ ..+.+.. .........+.+..|++
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~--~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N--VTFEGG-----FALQEGYSWLEGISKADIIEKSNNFELY 69 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c--e--EEEecc-----ceeccchhhhccCCcccccccCCceEEE
Confidence 478999999999999999999999999864221 1 1 112111 1221111 00011112233557999
Q ss_pred EEECCHHHHHHHHHHcCC-eEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 189 IAVEDVAKTVDLVKAKGG-KVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 189 f~V~Dld~~~~rL~~~G~-~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
|.|+|+++++++|+++|+ ++..+|...++|.+ .++|+|||||.|||.++
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r-~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQR-VVRFYDPDKHIIEVGES 119 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEecCcccCCCccE-EEEEECCCCCEEEEecc
Confidence 999999999999999986 68888888777765 69999999999999874
No 56
>PLN02367 lactoylglutathione lyase
Probab=99.61 E-value=1e-14 Score=130.44 Aligned_cols=106 Identities=31% Similarity=0.497 Sum_probs=84.1
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCC-----------------------------------CccEEEEEEeC
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPED-----------------------------------KNAVLELTYNH 287 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~-----------------------------------~~~~l~l~~~~ 287 (360)
-.+.|++|+|+|++++++||++ +||++.-. ....+||++++
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~----vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~ 149 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSR----VLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNW 149 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHH----hcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCC
Confidence 3789999999999999999996 55554100 12367888877
Q ss_pred Cccc------ccCC----CCeeEEEEEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcc
Q 018138 288 GVTE------YDKG----NGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 354 (360)
Q Consensus 288 ~~~~------~~~g----~g~~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 354 (360)
+... +..+ .|++|++|.|+|+++++++|+++|+++..+|...+. .++++++||||++|||++...
T Consensus 150 g~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 150 GTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CCCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 6542 4433 489999999999999999999999999987764333 578999999999999999764
No 57
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.60 E-value=3.1e-14 Score=116.38 Aligned_cols=112 Identities=17% Similarity=0.301 Sum_probs=83.1
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEE
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 190 (360)
|.++++|+.|.|+|++++++||+++|||++.... +.+ .++..++ +..+.+.... ...+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~---~~~l~~~~~~------~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPF--AVVKLDN---GVSLDFAQPD------GEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCE--EEEEcCC---CcEEEEecCC------CCCCcceEEEE
Confidence 3578999999999999999999999999987522 112 3333332 2356655421 11246799998
Q ss_pred EC--CHHHHHHHHHHcCCeEecCCeec-------CCCCEEEEEEECCCCCEEEEeec
Q 018138 191 VE--DVAKTVDLVKAKGGKVTREPGPV-------KGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 191 V~--Dld~~~~rL~~~G~~~~~~p~~~-------~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
++ |+++++++|+++|+++..+|... .+|. +.+||+|||||.||+++.
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~-~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGG-RGVYFLDPDGHLLEIITR 121 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCe-eEEEEECCCCCEEEEEec
Confidence 86 69999999999999987766543 2344 479999999999999986
No 58
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.60 E-value=2.5e-14 Score=115.80 Aligned_cols=113 Identities=27% Similarity=0.358 Sum_probs=84.0
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEE
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 191 (360)
+.+|+|+.|.|+|++++++||+++|||++..... . .+++..+. ...+.+.+... ...++.|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----G--IVYLRATG-SEHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----C--EEEEECCC-CccEEEEeccC-------CCCCCceEEEEe
Confidence 3689999999999999999999999999875422 2 24555332 23344444321 123578999999
Q ss_pred C---CHHHHHHHHHHcCCeEecCCeec--CCCCEEEEEEECCCCCEEEEeecC
Q 018138 192 E---DVAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 192 ~---Dld~~~~rL~~~G~~~~~~p~~~--~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
+ ++++++++++++|+++..+|... ++++ +.+++.||+||.|||+...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGG-YGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCc-eEEEEECCCCCEEEEEecc
Confidence 4 69999999999999988776433 3343 4689999999999998764
No 59
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.60 E-value=6.1e-14 Score=116.08 Aligned_cols=119 Identities=25% Similarity=0.432 Sum_probs=85.4
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECC
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED 193 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D 193 (360)
+|+||+|.|+|++++++||+++|||++..+... ...+++..+. ..+..+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998755321 1245665441 12345666554332211234578899999987
Q ss_pred HH---HHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 194 VA---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 194 ld---~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
++ +++++|.++|+++...+. . ++ ...+|++||+||.||++...+
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~-~~-~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-H-GN-AWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-C-Cc-eeEEEEECCCCCEEEEEEcCC
Confidence 55 588999999998776542 2 22 346899999999999998765
No 60
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.60 E-value=3.9e-14 Score=114.08 Aligned_cols=110 Identities=23% Similarity=0.326 Sum_probs=80.9
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEE
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 191 (360)
+++|+||.|.|+|++++++||++ |||++..+.+ . .+|+..+.. .++.+.+... ...++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~---~---~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD---D---ELYYRGYGT-DPFVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC---C---eEEEecCCC-ccEEEEcccC-------CcCcccEEEEEE
Confidence 46899999999999999999999 9999865421 1 356654322 2233322111 124688999999
Q ss_pred CCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 192 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 192 ~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
+|.+++.+.+++.|......+. .+++++ .+||+|||||.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APGGGK-RVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCCCce-EEEEECCCCCEEEEEec
Confidence 9999999999999998765432 344444 69999999999999875
No 61
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=4.9e-14 Score=114.86 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=80.3
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecC--------C--CCCCcCCCcc
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY--------G--VDKYDIGTGF 184 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~--------~--~~~~~~g~g~ 184 (360)
+.|+.|.|+|++++.+||+++|||++..... .+.+ ..+..+ . ..+.+.... . ........+.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELETG--E--TTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecCC--c--EEEEEEcccccccccccCccCCccccCCCc
Confidence 4699999999999999999999999864322 1122 112211 1 122221100 0 0111112344
Q ss_pred eEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 185 GHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 185 ~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
.|++|.|+|+++++++++++|+++..+|...++|.+ .++++|||||.+|++++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQT-VAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcE-EEEEECCCCCEEEEecC
Confidence 689999999999999999999999888877777765 68999999999999864
No 62
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.58 E-value=1.2e-13 Score=112.35 Aligned_cols=114 Identities=20% Similarity=0.227 Sum_probs=82.9
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC----CcCCCcceEEEEEECCH
Q 018138 119 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK----YDIGTGFGHFGIAVEDV 194 (360)
Q Consensus 119 ~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~----~~~g~g~~hi~f~V~Dl 194 (360)
.|.|+|++++++||+++|||++......++.....+.+..++. .+.+........ .....+..|++|.|+|+
T Consensus 4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 79 (122)
T cd08355 4 TLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDG----GVMVGSVRDDYRASSARAGGAGTQGVYVVVDDV 79 (122)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCE----EEEEecCCCcccccccccCCCceEEEEEEECCH
Confidence 3899999999999999999999876433333333445555421 233332111110 12234567999999999
Q ss_pred HHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 195 d~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
++++++++++|+++..+|...++|.+ .++++|||||.|+|.+
T Consensus 80 d~~~~~l~~~G~~v~~~~~~~~~g~~-~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 80 DAHYERARAAGAEILREPTDTPYGSR-EFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHCCCEEeeCccccCCCcE-EEEEECCCCCEEEEec
Confidence 99999999999999988887777755 5899999999999964
No 63
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.58 E-value=2.2e-14 Score=130.12 Aligned_cols=234 Identities=22% Similarity=0.394 Sum_probs=162.6
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCC--CeEEEEEeeCCCCceEEEEEEecCCCC--C-----CcCC
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED--RYTNAFLGYGPEDSHFVVELTYNYGVD--K-----YDIG 181 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~lel~~~~~~~--~-----~~~g 181 (360)
...+++||.+.|.|...+.+||+..|||+.....+.+-+ .+...-++-| . .+.-+..+..+. . ..+|
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g--~--~vFv~~s~~~p~~~~~G~~l~~Hg 89 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG--K--IVFVFNSAYNPDNSEYGDHLVKHG 89 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC--C--EEEEEecCCCCCchhhhhhhhhcc
Confidence 467899999999999999999999999999865432211 1111122211 1 122222222111 1 2356
Q ss_pred CcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCC--CCEEEEEEECCCCCEEEEeecCCC------------------
Q 018138 182 TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGPT------------------ 241 (360)
Q Consensus 182 ~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~iEl~~~~~~------------------ 241 (360)
.|+.-+||+|+|.+++.+.+.++|+++..+|....+ |..+++.+..+......+++....
T Consensus 90 dgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp 169 (381)
T KOG0638|consen 90 DGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFP 169 (381)
T ss_pred cchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccC
Confidence 788889999999999999999999999999877654 566778888888888888876531
Q ss_pred ------CCCceeceeeec--CHHHHHHHhhhcceEEeeec----cCCC-----------------ccEEEEEEeC---Cc
Q 018138 242 ------PEPLCQVMLRVG--DLDRAINFYKKYTIAVMGYG----PEDK-----------------NAVLELTYNH---GV 289 (360)
Q Consensus 242 ------~~~i~hv~L~V~--D~e~a~~FY~~~~~~~lG~~----~~~~-----------------~~~l~l~~~~---~~ 289 (360)
..+++|++.+++ .++.+.+||.+ +|||. .++. ...+.+..+. |.
T Consensus 170 ~l~~~~~~~iDH~vgn~p~~em~sa~~wy~~----~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~ 245 (381)
T KOG0638|consen 170 KLPKGGLNRIDHVVGNQPDGEMESALRWYEK----CLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGK 245 (381)
T ss_pred CCCccceeehhhhhccCCcccchHHHHHHHH----hhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCC
Confidence 137899999998 58899999999 89875 2221 1222333331 22
Q ss_pred c---------cccCCCCeeEEEEEeCCHHHHHHHHHHcCCeEeeCCccc--------C--C----------CCcEEEEEE
Q 018138 290 T---------EYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPL--------P--G----------INTKITACL 340 (360)
Q Consensus 290 ~---------~~~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~~--------~--~----------~~~~~~~~~ 340 (360)
+ +++.|.|++|+++.++|+-.+.+.++++|+++...|... . . ....+..=+
T Consensus 246 k~ksQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~ 325 (381)
T KOG0638|consen 246 KKKSQIQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDF 325 (381)
T ss_pred ccHHHHHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEec
Confidence 1 256789999999999999999999999999999887531 1 0 001234446
Q ss_pred CCCCCeEEEEcC
Q 018138 341 DPDGWKSVFVDN 352 (360)
Q Consensus 341 DPdG~~iel~~~ 352 (360)
|-.|.++.++..
T Consensus 326 De~gyLLQIFTK 337 (381)
T KOG0638|consen 326 DENGYLLQIFTK 337 (381)
T ss_pred CCCcEEeeeecc
Confidence 777888887654
No 64
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.57 E-value=8.3e-14 Score=112.66 Aligned_cols=111 Identities=19% Similarity=0.212 Sum_probs=80.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCC-----CCcCCCcceEEEEEE
Q 018138 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD-----KYDIGTGFGHFGIAV 191 (360)
Q Consensus 117 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~-----~~~~g~g~~hi~f~V 191 (360)
+..|.|+|++++.+||+++|||++..+. .. .+.+..++. ...+.+....... ....+.+ .|++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~--~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DW--YVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQG-LILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----Cc--EEEEecCCC--ceEEEEccCCCCCCcchhcccCCce-EEEEEEE
Confidence 4679999999999999999999997542 11 234443322 2455554322211 1112333 4899999
Q ss_pred CCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 192 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 192 ~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
+|+++++++++++|+++..+|...++|.+ .++++||+|+.|||+|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPWGQR-HFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCCcce-EEEEECCCCCEEEEEC
Confidence 99999999999999998888877777754 6899999999999975
No 65
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.57 E-value=2.2e-13 Score=110.29 Aligned_cols=114 Identities=23% Similarity=0.244 Sum_probs=85.5
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCC--CCcCCCcceEEEEEECCHHH
Q 018138 119 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD--KYDIGTGFGHFGIAVEDVAK 196 (360)
Q Consensus 119 ~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~--~~~~g~g~~hi~f~V~Dld~ 196 (360)
.|.|+|++++.+||+++|||++..+...+++....+.+..++ ..+.+....... ....+.+..|++|.|+|+++
T Consensus 6 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~~ 81 (122)
T cd07246 6 YLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSLHLYVEDVDA 81 (122)
T ss_pred EEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEEEEEeCCHHH
Confidence 488999999999999999999987655444444455555543 245554322110 11223456799999999999
Q ss_pred HHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 197 TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 197 ~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
+++++.++|+++..+|....+|.+ .++++||+|+.|+|.+
T Consensus 82 ~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 82 TFARAVAAGATSVMPPADQFWGDR-YGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHCCCeEecCcccccccce-EEEEECCCCCEEEEec
Confidence 999999999999988877777754 6999999999999976
No 66
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.56 E-value=2.9e-14 Score=118.84 Aligned_cols=105 Identities=22% Similarity=0.281 Sum_probs=80.0
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCCC--c--c----------EEEEEEeCCccc------ccCCCCeeEEEEE
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK--N--A----------VLELTYNHGVTE------YDKGNGYAQIAIG 304 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~--~--~----------~l~l~~~~~~~~------~~~g~g~~hiaf~ 304 (360)
++|+.|.|.|++++.+||++ +|||+.... . . .+.+........ ...+.+.+|++|.
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~----vLGf~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~ 76 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFST----KLGFEPVAYHGSEDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFR 76 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHH----hcCCeEEEecCCCceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEE
Confidence 57999999999999999999 899864211 0 1 111111111000 1134688999999
Q ss_pred eCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcc
Q 018138 305 TDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 354 (360)
Q Consensus 305 V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 354 (360)
|+|+++++++++++|+++..+|...+++ .++++++||||+.|||++...
T Consensus 77 V~Dvda~~~~l~~~G~~v~~~p~~~~~~-~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 77 VDDAAAAYERAVARGAKPVQEPVEEPGE-LKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred eCCHHHHHHHHHHcCCeEccCceecCCe-EEEEEEeccCCcEEEEEecCC
Confidence 9999999999999999999999875553 789999999999999999754
No 67
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.55 E-value=1.3e-13 Score=112.29 Aligned_cols=114 Identities=25% Similarity=0.293 Sum_probs=80.1
Q ss_pred eEEEEEEeCCHHHHHHHHHHh---cCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEE
Q 018138 115 MLHVVYRVGDLDKTIKFYTEC---LGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 191 (360)
|+||.|.|+|++++++||+++ |||++..+. .+. .+++..+.. ...+.+........ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~~--~~~~~~~~~--~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GPG--AVGYGKGGG--GPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CCc--eeEeccCCC--CceEEEeccccCCC-CCCCCceEEEEEC
Confidence 579999999999999999999 699987543 111 233333222 33455544322111 1223457999999
Q ss_pred CC---HHHHHHHHHHcCCeEecCCeecCC--CCEEEEEEECCCCCEEEEe
Q 018138 192 ED---VAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELL 236 (360)
Q Consensus 192 ~D---ld~~~~rL~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~iEl~ 236 (360)
+| +++++++++++|+.+..+|....+ +....+||+|||||.||++
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 888999999999998887766543 2334689999999999996
No 68
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.55 E-value=8.3e-14 Score=111.51 Aligned_cols=109 Identities=24% Similarity=0.407 Sum_probs=78.2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEEC--CH
Q 018138 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE--DV 194 (360)
Q Consensus 117 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~--Dl 194 (360)
||.|.|+|++++++||+++|||++..+.+ ...++..+ ...+.+....... ....+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~----~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELA----GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEec----CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 88999999999999999999999875432 12445443 1345544332211 12346789999994 79
Q ss_pred HHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 195 d~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
++++++++++|+++...+.....++ ..+|++||||+.||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEG-RSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCc-eEEEEECCCCCEEEEEeC
Confidence 9999999999999865433323333 368999999999999864
No 69
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.55 E-value=6.2e-14 Score=119.39 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=82.1
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC--------ccEEEEEEeCCc-----c--c--ccCCCCeeEEEEEeC
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK--------NAVLELTYNHGV-----T--E--YDKGNGYAQIAIGTD 306 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~--------~~~l~l~~~~~~-----~--~--~~~g~g~~hiaf~V~ 306 (360)
+++||.|.|+|++++++||++ +||++..+. .....+....+. . . ...+++++|+||.|+
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~----~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~Hiaf~v~ 76 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTE----TFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQGPESGVHHAAFEVH 76 (153)
T ss_pred CccEEEEecCCHHHHHHHHHH----hcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhcCCCCceeEEEEEcC
Confidence 578999999999999999999 999875321 112222222110 0 0 112468999999999
Q ss_pred CHHHHH---HHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCccc
Q 018138 307 DVYKTA---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 355 (360)
Q Consensus 307 Dl~~~~---~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 355 (360)
|++++. ++|+++|+++.++|+++..+...++|++|||||.|||....+-
T Consensus 77 die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~~ 128 (153)
T cd07257 77 DFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGDL 128 (153)
T ss_pred CHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCcee
Confidence 999876 9999999999999988876656788999999999999876543
No 70
>PRK10291 glyoxalase I; Provisional
Probab=99.54 E-value=9.3e-14 Score=114.49 Aligned_cols=102 Identities=43% Similarity=0.765 Sum_probs=75.5
Q ss_pred eeeecCHHHHHHHhhhcceEEeeeccCC----CccE----------------EEEEEeCCcccccCCCCeeEEEEEeCCH
Q 018138 249 MLRVGDLDRAINFYKKYTIAVMGYGPED----KNAV----------------LELTYNHGVTEYDKGNGYAQIAIGTDDV 308 (360)
Q Consensus 249 ~L~V~D~e~a~~FY~~~~~~~lG~~~~~----~~~~----------------l~l~~~~~~~~~~~g~g~~hiaf~V~Dl 308 (360)
+|.|+|++++++||++ +|||+... .... +++..+++...+..+++++|++|.|+|+
T Consensus 1 ~l~V~Dle~s~~FY~~----~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~ 76 (129)
T PRK10291 1 MLRVGDLQRSIDFYTN----VLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNA 76 (129)
T ss_pred CEEecCHHHHHHHHHh----ccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCH
Confidence 4789999999999999 99987421 1111 1121111111223456789999999999
Q ss_pred HHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcc
Q 018138 309 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 354 (360)
Q Consensus 309 ~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 354 (360)
++++++|+++|+++..++.+.+++..++++|+||||+.|||++..+
T Consensus 77 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 77 AEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 9999999999999998776666543467889999999999999764
No 71
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.54 E-value=1.2e-13 Score=109.58 Aligned_cols=108 Identities=25% Similarity=0.321 Sum_probs=76.9
Q ss_pred EEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCHHHHHH
Q 018138 120 YRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVD 199 (360)
Q Consensus 120 l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dld~~~~ 199 (360)
|.|+|++++++||+++|||++..... .+ +.+..+.........+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DY--VDFSLGFRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SE--EEEEETEEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----Ce--EEEEeccchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 67999999999999999999987322 12 334333211011223333221 11234578899999999999999
Q ss_pred HHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEe
Q 018138 200 LVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (360)
Q Consensus 200 rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~ 236 (360)
+++++|+++..+|...++|. ..+++.|||||.||++
T Consensus 73 ~l~~~G~~~~~~~~~~~~g~-~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWGQ-RSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTSE-EEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCCe-EEEEEECCCCCEEEeC
Confidence 99999999988888877764 4699999999999986
No 72
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.54 E-value=4.9e-14 Score=123.27 Aligned_cols=107 Identities=29% Similarity=0.464 Sum_probs=81.5
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCC------C-----------------------------ccEEEEEEeC
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPED------K-----------------------------NAVLELTYNH 287 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~------~-----------------------------~~~l~l~~~~ 287 (360)
-++.|++|.|.|+++|++||++ +||++... . ...++|.++.
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~----vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~ 101 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSR----VLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNW 101 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHh----hcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcC
Confidence 4799999999999999999998 77775310 0 1256666544
Q ss_pred Cccc------ccC----CCCeeEEEEEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCccc
Q 018138 288 GVTE------YDK----GNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 355 (360)
Q Consensus 288 ~~~~------~~~----g~g~~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 355 (360)
+... +.. +.|+.|++|.|+|+++++++|+++|+++...|....+ .++++++||||++|||++..+.
T Consensus 102 ~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 102 GTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred CCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCCc
Confidence 3221 221 2489999999999999999999999999877653222 5778999999999999997654
No 73
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=2.3e-13 Score=110.25 Aligned_cols=114 Identities=29% Similarity=0.414 Sum_probs=81.9
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCC------CCcCCCcceEEE
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD------KYDIGTGFGHFG 188 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~------~~~~g~g~~hi~ 188 (360)
|.||.|.|.|++++++||+++|||++..+ +++. .+++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~--~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRR--LAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCc--eEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999999764 1222 366666543 234444322111 111234788999
Q ss_pred EEEC--CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 189 IAVE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 189 f~V~--Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
|.++ |++++++++.++|+++...+. ..++++ .+++.||+|+.||++++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~~~-~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRGGR-SLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCCee-EEEEECCCCCEEEEecC
Confidence 9994 799999999999999876554 233434 58999999999999863
No 74
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.54 E-value=1.2e-13 Score=112.46 Aligned_cols=109 Identities=28% Similarity=0.476 Sum_probs=78.9
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEE--
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV-- 191 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V-- 191 (360)
+|+||.|.|+|++++.+||+++|||++..+.+ + .+++..+. ..+.+.+.... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~--~~~~l~~~~~~-----~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD--LWLCLSVDANV-----GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC--EEEEEecCCCC-----CCCCCeeeEEEEeCH
Confidence 57899999999999999999999999875432 1 24555432 12233221111 1234678999999
Q ss_pred CCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 192 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 192 ~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
+|+++++++++++|+++..++.. .+ ..+||.|||||.||++...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~~--~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--EG--DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--Cc--cEEEEECCCCCEEEEEeCC
Confidence 47999999999999987654332 22 3699999999999999754
No 75
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.53 E-value=6.4e-14 Score=117.93 Aligned_cols=107 Identities=11% Similarity=0.147 Sum_probs=79.5
Q ss_pred CCCceeceeeecCHHHHHHHhhhcceEEeeeccCCC-----c---cEEEEEEeCCcc--ccc--CCCCeeEEEEEeCCHH
Q 018138 242 PEPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-----N---AVLELTYNHGVT--EYD--KGNGYAQIAIGTDDVY 309 (360)
Q Consensus 242 ~~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-----~---~~l~l~~~~~~~--~~~--~g~g~~hiaf~V~Dl~ 309 (360)
+.+++||+|.|+|++++.+||++ +|||+.... . ....+....... ... ++.+++|++|.|+|++
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~----vLGf~~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~~~~~~~~Hiaf~v~d~~ 79 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTD----VLDFYLAERVVDPDGGTRVGSFLSCSNKPHDIAFVGGPDGKLHHFSFFLESWE 79 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHH----hcCCEEEEEEecCCCCeEEEEEEecCCCcceEEEecCCCCCceEEEEEcCCHH
Confidence 45799999999999999999999 999974211 1 112222111111 111 2457899999999877
Q ss_pred H---HHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 310 K---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 310 ~---~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
+ +.++|+++|+++..+|.+++.+.++.+||+|||||.|||...
T Consensus 80 ~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 80 DVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred HHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 6 678999999999888877764446889999999999999764
No 76
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.53 E-value=1.6e-13 Score=116.27 Aligned_cols=110 Identities=42% Similarity=0.721 Sum_probs=82.7
Q ss_pred CCCCCceeceeeecCHHHHHHHhhhcceEEeeeccCC----Cc--cE-EEEE-------------EeCCcccccCCCCee
Q 018138 240 PTPEPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPED----KN--AV-LELT-------------YNHGVTEYDKGNGYA 299 (360)
Q Consensus 240 ~~~~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~----~~--~~-l~l~-------------~~~~~~~~~~g~g~~ 299 (360)
....++.|+.|.|.|++++.+||++ +|||+... .. .. ..+. .+........+.+..
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~----vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~ 88 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTE----VLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFG 88 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHH----hcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCcee
Confidence 3467899999999999999999999 99987421 11 01 1111 111111112345789
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 300 QIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 300 hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
|++|.|+|+++++++++++|+++..+|.+.+.+..+.+||+||||+.|||++..
T Consensus 89 hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 89 HIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred EEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 999999999999999999999999888766655467899999999999999875
No 77
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.53 E-value=9.1e-14 Score=116.28 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=76.6
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccC-----------------------------CCccEEEEEEeCCccc--
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPE-----------------------------DKNAVLELTYNHGVTE-- 291 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~-----------------------------~~~~~l~l~~~~~~~~-- 291 (360)
.+++||.|.|+|++++.+||++ |||... +....+++.....+..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-----LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~ 76 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-----LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIA 76 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-----cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcC
Confidence 3689999999999999999985 455321 0112334433211111
Q ss_pred -----ccCCCCeeEEEEEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 292 -----YDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 292 -----~~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
...+.|++|+||.|+|+++++++|+++|+++..++...+.+ .+.+|++||||+.|||+|.
T Consensus 77 ~~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~-~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 77 DHRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENS-YRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred cCCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCC-eEEEEEECCCCCEEEeeec
Confidence 11235789999999999999999999999998876555443 6889999999999999984
No 78
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.53 E-value=3.5e-13 Score=107.97 Aligned_cols=107 Identities=22% Similarity=0.279 Sum_probs=80.0
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCHHHHH
Q 018138 119 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTV 198 (360)
Q Consensus 119 ~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dld~~~ 198 (360)
.|.|+|++++++||+++|||++... .. ...++..+. ..++.+.+..... .+....|++|.|+|+++++
T Consensus 5 ~l~v~Dl~~s~~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~~ 72 (112)
T cd07238 5 NLPVADPEAAAAFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDAAL 72 (112)
T ss_pred eEecCCHHHHHHHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHHHH
Confidence 4889999999999999999998642 11 124444332 2234556553321 1223569999999999999
Q ss_pred HHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 199 DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 199 ~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
++|+++|+++..+|....+|.+ .+++.||+||.|++.++
T Consensus 73 ~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 73 ARAVAAGFAIVYGPTDEPWGVR-RFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHhcCCeEecCCccCCCceE-EEEEECCCCCEEEEEEc
Confidence 9999999999888877676654 58999999999999975
No 79
>PRK11478 putative lyase; Provisional
Probab=99.53 E-value=1.3e-13 Score=113.23 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=74.9
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCC------c-----------cEEEEEEeCCccc---ccCCCCeeEEE
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK------N-----------AVLELTYNHGVTE---YDKGNGYAQIA 302 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~------~-----------~~l~l~~~~~~~~---~~~g~g~~hia 302 (360)
.+++||.|.|+|++++.+||++ +|||+.... . ..+++........ .....+++|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~----~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCD----ILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHH----HhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 4689999999999999999999 999875311 0 1111111100000 11234688999
Q ss_pred EEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 303 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 303 f~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
|.|+|+++++++|+++|+++...+.. +..+.+++||+||||+.|||++
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999998654322 2223688999999999999987
No 80
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.52 E-value=2e-13 Score=111.17 Aligned_cols=113 Identities=24% Similarity=0.359 Sum_probs=75.2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCC----CC-CcCCCcceEEE--E
Q 018138 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV----DK-YDIGTGFGHFG--I 189 (360)
Q Consensus 117 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~----~~-~~~g~g~~hi~--f 189 (360)
||+|.|+|++++++||+++|||++..... . ...+..+ +....+.+...... .. .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--ccccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 99999999999999999999999864321 1 1233322 22333443321100 00 01112456765 4
Q ss_pred EECCHHHHHHHHHHcCCeEecCCeecC---CCCEEEEEEECCCCCEEEEee
Q 018138 190 AVEDVAKTVDLVKAKGGKVTREPGPVK---GGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 190 ~V~Dld~~~~rL~~~G~~~~~~p~~~~---~g~~~~~~~~DPdG~~iEl~~ 237 (360)
.++|+++++++|+++|+++..+|.... .+..+.+|++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 568999999999999999987776432 223356999999999999964
No 81
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.52 E-value=9.4e-14 Score=115.40 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=84.2
Q ss_pred CCCceeceeeecCHHHHHHHhhhcceEEeeeccCCC--ccEEEEEEeCCc--c--cc---c-CCCCeeEEEEEeCCHHHH
Q 018138 242 PEPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK--NAVLELTYNHGV--T--EY---D-KGNGYAQIAIGTDDVYKT 311 (360)
Q Consensus 242 ~~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~--~~~l~l~~~~~~--~--~~---~-~g~g~~hiaf~V~Dl~~~ 311 (360)
|.+++|+.|.|.|++++.+||++ +||++..+. .....+....+. . .. + ...+++|++|.|+|++++
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~----vlGl~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~g~~hiaf~v~d~~~~ 76 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRD----RLGFRVSDRFKGRGAFLRAAGGGDHHNLFLIKTPAPMAGFHHAAFEVGDIDEV 76 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHH----hcCCEEEEEecCcEEEEECCCCCCCcEEEEecCCCCCCcceEEEEEeCCHHHH
Confidence 46789999999999999999999 999975432 112222221111 1 01 1 136899999999988766
Q ss_pred H---HHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcccccc
Q 018138 312 A---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKE 358 (360)
Q Consensus 312 ~---~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 358 (360)
. ++|+++|+++..+|.+++.++.+++||+||+|+.|||......+++
T Consensus 77 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~~~~ 126 (134)
T cd08360 77 MLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDYVDD 126 (134)
T ss_pred HHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccccccCC
Confidence 5 6999999999888887776656789999999999999987665543
No 82
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.51 E-value=4.8e-13 Score=105.01 Aligned_cols=112 Identities=33% Similarity=0.443 Sum_probs=84.5
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCHHH
Q 018138 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAK 196 (360)
Q Consensus 117 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dld~ 196 (360)
|+++.|+|++++.+||+++|||++...... .....+++..+ ...+++...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 889999999999999999999999876432 22345666544 246777665433221235578999999999999
Q ss_pred HHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEE
Q 018138 197 TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (360)
Q Consensus 197 ~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl 235 (360)
++++|+++|+.+..++.....+. ..+++.||+|+.||+
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGG-RVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCc-EEEEEECCCCcEEeC
Confidence 99999999999887765233333 469999999999985
No 83
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.51 E-value=4.6e-13 Score=107.51 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=74.9
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEE--E
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI--A 190 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f--~ 190 (360)
.+|+||+|.|+|++++++||+ +|||++..+. +. ..++..+. .+..+.+.... ..++.|++| .
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~----~~--~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEG----DG--LELRTAGN--DHRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeec----Cc--eEEEecCC--CceEEEeecCC-------CCceeeEEEEeE
Confidence 378999999999999999997 6999997542 11 22332222 23344443321 223455444 4
Q ss_pred ECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 191 VEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 191 V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
++|+++++++|+++|+++..++ ..++.. .+||.||+||.|||....
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~~~~-~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGADPD-GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcCCCC-EEEEECCCCCEEEEecCC
Confidence 5899999999999999987665 223333 589999999999998654
No 84
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.51 E-value=6.4e-13 Score=105.86 Aligned_cols=109 Identities=28% Similarity=0.353 Sum_probs=79.8
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCHHHHH
Q 018138 119 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTV 198 (360)
Q Consensus 119 ~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dld~~~ 198 (360)
.|.|+|++++++||+++|||++..... ... .+++..+ +..+.+......... ...+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~--~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPG--YAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCc--EEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 489999999999999999999976542 122 3455432 245555543322111 2345668999999999999
Q ss_pred HHHHHcCCe-EecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 199 DLVKAKGGK-VTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 199 ~rL~~~G~~-~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
++++++|++ +..++....+|.+ .+++.||+|+.||++|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~-~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMR-EFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccE-EEEEECCCCCEEEecC
Confidence 999999999 6666666666644 6899999999999975
No 85
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.50 E-value=5.5e-13 Score=108.12 Aligned_cols=120 Identities=28% Similarity=0.406 Sum_probs=87.2
Q ss_pred ccccccccccccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCC-CCceEEEEEEecCCCCCCc
Q 018138 101 EQNVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGP-EDSHFVVELTYNYGVDKYD 179 (360)
Q Consensus 101 ~~~~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~~~~~lel~~~~~~~~~~ 179 (360)
..+.+.|++ |.|.|++++++||+++|||++.+..+..+ ..++.+..+. ...+ .+.- ... ..
T Consensus 6 ~~~~i~w~E----------i~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG-~l~~--~~~---~~ 67 (127)
T COG3324 6 EKGTIVWFE----------LPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGG-GLMA--RPG---SP 67 (127)
T ss_pred cCCccEEEe----------eecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccc-eecc--CCc---CC
Confidence 345566666 99999999999999999999986544322 3334443332 2212 1211 111 11
Q ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 180 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 180 ~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
++.+...+.|.|+|+++..+|++++|++++.++.+.+++++ ++.+.||+||.|.|++..
T Consensus 68 p~~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~-~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 68 PGGGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGGGR-IAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CCCCCEEEEEecCChHHHHHHHHhcCCeEEecccccCCceE-EEEEECCCCCEEEEeecC
Confidence 22456789999999999999999999999999999987655 699999999999999754
No 86
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.50 E-value=6.5e-13 Score=107.73 Aligned_cols=112 Identities=28% Similarity=0.463 Sum_probs=79.2
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECC--
Q 018138 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED-- 193 (360)
Q Consensus 116 ~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D-- 193 (360)
.|+.|.|+|++++.+||+++||++...+.. .+ ..|. .+.. .+.+.+...... ...++.|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~~-~~~~-~~~~--~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----DY-AKFL-LEDP--RLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----Ce-eEEE-ecCC--ceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999999865421 11 2332 2222 334444332211 11478999999987
Q ss_pred -HHHHHHHHHHcCCeEecCCeecCC-CCEEEEEEECCCCCEEEEeecC
Q 018138 194 -VAKTVDLVKAKGGKVTREPGPVKG-GNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 194 -ld~~~~rL~~~G~~~~~~p~~~~~-g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
++++++++.++|+++..+|..... +....+|++||+||.|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 888999999999998876543321 2224699999999999999754
No 87
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.50 E-value=2.7e-13 Score=109.66 Aligned_cols=100 Identities=33% Similarity=0.606 Sum_probs=75.1
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCC----C--cc-EEEEEEeC-------------Cc-ccccCCCCeeEEEE
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPED----K--NA-VLELTYNH-------------GV-TEYDKGNGYAQIAI 303 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~----~--~~-~l~l~~~~-------------~~-~~~~~g~g~~hiaf 303 (360)
+.|+.|.|+|++++.+||++ +|||+... . .. ...+.... .. .....+.+.+|++|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~----~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 76 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTD----VLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAF 76 (121)
T ss_pred CeeEEEEecCcHHHHHHHHh----ccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEE
Confidence 57999999999999999999 99986421 1 01 11121111 10 11123457889999
Q ss_pred EeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEE
Q 018138 304 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 350 (360)
Q Consensus 304 ~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 350 (360)
.|+|+++++++++++|+++..+|...+ .++++||+||||++|||+
T Consensus 77 ~v~did~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 77 AVDDVYAACERLEEMGVEVTKPPGDGG--MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred EeCCHHHHHHHHHHCCCEEeeCCccCC--CceEEEEECCCCCEEEeC
Confidence 999999999999999999999887663 368899999999999985
No 88
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.50 E-value=1.8e-13 Score=117.66 Aligned_cols=108 Identities=23% Similarity=0.237 Sum_probs=75.3
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccC-------C--C--------------------------ccEEEEEEeC
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPE-------D--K--------------------------NAVLELTYNH 287 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~-------~--~--------------------------~~~l~l~~~~ 287 (360)
.+++||.|.|+|+++|++||++ +||++.. . . ...+++....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~----~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTE----VLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHH----hcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 5789999999999999999999 8887431 0 0 0112222211
Q ss_pred Cccc-c----cCCCCeeEEEEEeCCHHHHHHHHHHcCCeEeeCCccc--CCC-CcEEEEEECCCCCeEEEEcCcc
Q 018138 288 GVTE-Y----DKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPL--PGI-NTKITACLDPDGWKSVFVDNLD 354 (360)
Q Consensus 288 ~~~~-~----~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~~--~~~-~~~~~~~~DPdG~~iel~~~~~ 354 (360)
+... . ..+.|+.|++|.|+|+++++++++++|+++..++... ++. ..+.+|++||||+.|||++..+
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 1110 0 1135789999999999999999999999865533211 211 2378999999999999999753
No 89
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.49 E-value=2.5e-13 Score=110.59 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=78.8
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCCc--cEEEEEEeC--Ccc--cc--cCCCCeeEEEEEeC---CHHHH
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN--AVLELTYNH--GVT--EY--DKGNGYAQIAIGTD---DVYKT 311 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~--~~l~l~~~~--~~~--~~--~~g~g~~hiaf~V~---Dl~~~ 311 (360)
.+++|+.|.|+|++++.+||++ +|||+..... ....+.... +.. .. ....++.|++|.|+ |++++
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~hiaf~v~~~~dv~~~ 78 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYRE----VLGLDEVGRDDQGRVYLKAWDEFDHHSIVLREADTAGLDFMGFKVLDDADLEKL 78 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHh----ccCCEeeeecCCceEEEEccCCCcccEEEeccCCCCCeeEEEEEeCCHHHHHHH
Confidence 5789999999999999999999 9999754321 122222211 111 11 22357899999996 78999
Q ss_pred HHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 312 AEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 312 ~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
+++++++|+++...|.....+.++.+||+|||||.||+....
T Consensus 79 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 79 EARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred HHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 999999999998766544333367899999999999998754
No 90
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.49 E-value=6.4e-13 Score=108.00 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=77.5
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecC-----CCCCCcCCCcceEEEE
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY-----GVDKYDIGTGFGHFGI 189 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~-----~~~~~~~g~g~~hi~f 189 (360)
|+||+|.|+|++++++||+. |||++...... . ..+.+..+.+ ..+.+.... .......+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~--~~~~~~~~~~---~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--E--PHVEAVLPGG---VRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--C--CcEEEEeCCC---EEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 99998643221 1 1233433321 223222110 0000112234568888
Q ss_pred EEC---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEe
Q 018138 190 AVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (360)
Q Consensus 190 ~V~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~ 236 (360)
.+. |+++++++|+++|+++..+|...++|.+ .++++|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWGQR-YAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCE-EEEEECCCCCEEEEe
Confidence 875 7999999999999998888887777765 589999999999996
No 91
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=2.5e-13 Score=110.30 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=76.9
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEE------E--eCC----cccccCCCCeeEEEEEeCCHHH
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELT------Y--NHG----VTEYDKGNGYAQIAIGTDDVYK 310 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~------~--~~~----~~~~~~g~g~~hiaf~V~Dl~~ 310 (360)
++.++.|.|+|++++.+||++ +||++.... .....+. . ... ......+.+..|++|.|+|+++
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~----~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~dvd~ 77 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEK----VLGLKVVMDFGENVTFEGGFALQEGYSWLEGISKADIIEKSNNFELYFEEEDFDA 77 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHH----hcCCEEeeccCceEEEeccceeccchhhhccCCcccccccCCceEEEEEehhhHH
Confidence 467899999999999999999 999875321 1111110 0 000 0011223456799999999999
Q ss_pred HHHHHHHcCC-eEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 311 TAEAIKLSGG-KITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 311 ~~~~l~~~G~-~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
++++|+++|+ ++..+|...+++ .+.++|+|||||.|||.+.
T Consensus 78 ~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 78 FLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred HHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 9999999986 788888877765 6899999999999999874
No 92
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.49 E-value=4.3e-13 Score=107.63 Aligned_cols=102 Identities=24% Similarity=0.310 Sum_probs=77.9
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCCCc----cEEEEEEeCCc-cc---c----cCCCCeeEEEEEeCCHHHHH
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN----AVLELTYNHGV-TE---Y----DKGNGYAQIAIGTDDVYKTA 312 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~----~~l~l~~~~~~-~~---~----~~g~g~~hiaf~V~Dl~~~~ 312 (360)
+.|+.|.|+|++++++||++ +||++..... ....+...... .. . .......|++|.|+|+++++
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~di~~~~ 76 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGA----VFGWTFEDMGDGGGDYAVFSTGGGAVGGLMKAPEPAAGSPPGWLVYFAVDDVDAAA 76 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHh----ccCceeeeccCCCCceEEEEeCCccEEEEecCCCCCCCCCCeEEEEEEeCCHHHHH
Confidence 46999999999999999999 9998753322 12222221100 00 1 12346789999999999999
Q ss_pred HHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 313 EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 313 ~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
++++++|+++..+|...+++ ++.++++|||||.|+|++
T Consensus 77 ~~l~~~g~~~~~~~~~~~~~-~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 77 ARVEAAGGKVLVPPTDIPGV-GRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHCCCEEEeCCcccCCc-EEEEEEECCCCCEEEeEC
Confidence 99999999999998877644 689999999999999975
No 93
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.48 E-value=3.8e-13 Score=114.62 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=84.4
Q ss_pred CCCceeceeeecCHHHHHHHhhhcceEEeeeccCCC---------c-cEEEEEEeCCcc--c---ccCCCCeeEEEEEeC
Q 018138 242 PEPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK---------N-AVLELTYNHGVT--E---YDKGNGYAQIAIGTD 306 (360)
Q Consensus 242 ~~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~---------~-~~l~l~~~~~~~--~---~~~g~g~~hiaf~V~ 306 (360)
+.+++|+.|.|+|++++.+||++ +||++.... . ....+..+.... . ...+.+++|++|.|+
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~----~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~g~~Hiaf~V~ 82 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRD----VLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGPGPKRIHHLMLEVT 82 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHH----ccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCCCCceeEEEEEEcC
Confidence 56899999999999999999999 999874211 1 112222221111 1 112368999999997
Q ss_pred CHH---HHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcccccc
Q 018138 307 DVY---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKE 358 (360)
Q Consensus 307 Dl~---~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 358 (360)
|++ +++++|+++|+++..++..++.+..+.+|++||+|+.|||.....-++|
T Consensus 83 d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~~~~~ 137 (154)
T cd07237 83 SLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGRTVDD 137 (154)
T ss_pred CHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCceEccC
Confidence 654 6899999999999988887776557889999999999999887655543
No 94
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.48 E-value=4e-13 Score=108.89 Aligned_cols=104 Identities=19% Similarity=0.341 Sum_probs=75.9
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCC------cc-EEEEEEeCCc-----------c--cccCCCCeeEEE
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK------NA-VLELTYNHGV-----------T--EYDKGNGYAQIA 302 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~------~~-~l~l~~~~~~-----------~--~~~~g~g~~hia 302 (360)
.+++|+.|.|.|++++.+||++ +|||..... .. .+.+....+. . ..+.+.+++|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVE----ILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHH----hcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 3689999999999999999999 999875311 01 1111111110 0 011235789999
Q ss_pred EEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 303 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 303 f~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
|.|+|+++++++++++|+++...+..... +.+.+|++||+|+.|||+|
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 99999999999999999998876543333 2578999999999999975
No 95
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.48 E-value=1.2e-12 Score=105.14 Aligned_cols=108 Identities=26% Similarity=0.349 Sum_probs=79.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC-CcCCCcceEEEEEECC---
Q 018138 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVED--- 193 (360)
Q Consensus 118 V~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~-~~~g~g~~hi~f~V~D--- 193 (360)
+.|.|+|++++++||+++|||++.... ..+ +.+..++ ...+.+........ .....+..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~--~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTF--ALFVLGS---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----Cce--EEEEeCC---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 569999999999999999999987431 222 3333322 23566655433211 1123467899999985
Q ss_pred HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEe
Q 018138 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (360)
Q Consensus 194 ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~ 236 (360)
+++++++++++|+++..+|...++|. .++|+|||||.||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~--~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGY--TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCcc--EEEEECCCCCEEEee
Confidence 88999999999999998888777764 589999999999986
No 96
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.48 E-value=5.4e-13 Score=106.88 Aligned_cols=95 Identities=27% Similarity=0.336 Sum_probs=78.7
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCC--cCCCcceEEEEEECC
Q 018138 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKY--DIGTGFGHFGIAVED 193 (360)
Q Consensus 116 ~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~--~~g~g~~hi~f~V~D 193 (360)
+||+|.|+|++++++||+++||++.......+..+.+..++..+++. ..+||.++...... ..+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999988776666777888888876532 67999886554321 267799999999999
Q ss_pred HHHHHHHHHHcCCeEecCC
Q 018138 194 VAKTVDLVKAKGGKVTREP 212 (360)
Q Consensus 194 ld~~~~rL~~~G~~~~~~p 212 (360)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987664
No 97
>PRK06724 hypothetical protein; Provisional
Probab=99.47 E-value=3.9e-13 Score=110.97 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=75.8
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEe---eeccC------CCccEEEEEEeCCcccccCCCCeeEEEEEe---CCHHH
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVM---GYGPE------DKNAVLELTYNHGVTEYDKGNGYAQIAIGT---DDVYK 310 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~l---G~~~~------~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V---~Dl~~ 310 (360)
.+++||.|.|+|+++|++||++ +| ||+.. .....+.+....+ ......+..|+||.| +|+++
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~----vlg~lg~~~~~~~~~~~g~~~l~l~~~~~--~~~~~~g~~h~af~v~~~~dvd~ 79 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDM----LFSIIGWRKLNEVAYSTGESEIYFKEVDE--EIVRTLGPRHICYQAINRKVVDE 79 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHH----HHhhCCcEEeeeEeeeCCCeeEEEecCCc--cccCCCCceeEEEecCChHHHHH
Confidence 4799999999999999999998 55 55432 1111222211111 012235788999998 78999
Q ss_pred HHHHHHHcCCeEeeCCcccCC--CCcEEEEEECCCCCeEEEEcCc
Q 018138 311 TAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 311 ~~~~l~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iel~~~~ 353 (360)
++++++++|+++..+|...+. .+.+.+||+|||||.|||+...
T Consensus 80 ~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 80 VAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred HHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 999999999999888865442 3247899999999999998653
No 98
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.47 E-value=5e-13 Score=112.25 Aligned_cols=109 Identities=16% Similarity=0.237 Sum_probs=82.3
Q ss_pred eeceeeecCHHHHHHHhhhcceEEeeeccCCC--ccEEEEEEeCCc--c--cc--cCCCCeeEEEEEeCC---HHHHHHH
Q 018138 246 CQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK--NAVLELTYNHGV--T--EY--DKGNGYAQIAIGTDD---VYKTAEA 314 (360)
Q Consensus 246 ~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~--~~~l~l~~~~~~--~--~~--~~g~g~~hiaf~V~D---l~~~~~~ 314 (360)
+||.|.|+|++++.+||++ +||++..+. .....+...... . .. ....+++|++|.|+| +++++++
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~----vLG~~~~~~~~~~~~~l~~~~~~~~h~~~~~~~~~~gl~Hiaf~v~~~~~v~~~~~~ 76 (141)
T cd07258 1 GHVVIGSENFEASRDSLVE----DFGFRVSDLIEDRIVFMRCHPNPFHHTFAVGPASSSHFHHVNFMVTDIDDIGKALYR 76 (141)
T ss_pred CcEEEecCCHHHHHHHHHh----cCCCEeeeeeCCEEEEEEcCCCCCcceeeeccCCCCceEEEEEECCCHHHHHHHHHH
Confidence 5899999999999999999 999986432 122333321111 1 11 123589999999975 5678999
Q ss_pred HHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcccccc
Q 018138 315 IKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKE 358 (360)
Q Consensus 315 l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 358 (360)
|+++|+++..+|++++.+..+.+||+||+|+.|||.-..+...|
T Consensus 77 l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~~ 120 (141)
T cd07258 77 IKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEFAE 120 (141)
T ss_pred HHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcceecc
Confidence 99999999999988886667889999999999999876654443
No 99
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.46 E-value=5.3e-13 Score=111.63 Aligned_cols=106 Identities=22% Similarity=0.274 Sum_probs=78.8
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCCc----------cEEEEEEeCCcccccCCCCeeEEEEEeC--CHHH
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN----------AVLELTYNHGVTEYDKGNGYAQIAIGTD--DVYK 310 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~----------~~l~l~~~~~~~~~~~g~g~~hiaf~V~--Dl~~ 310 (360)
.++.|+.|.|+|++++.+||++ +||++..... ..+.+...........+.+++|++|.++ |+++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~----~lG~~~~~~~~~~~~~~~~g~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dv~~ 78 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEK----VLGAKLLVKGRKTAYFDLNGLWIALNEEKDIPRNEIHQSYTHIAFSIEEEDFDH 78 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHh----ccCCEEEeecCeeEEEecCCeEEEeeccCCCCCccCCCCeeEEEEEecHHHHHH
Confidence 4689999999999999999999 9999754211 1111111100000112346789999997 9999
Q ss_pred HHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 311 TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 311 ~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
++++++++|+++..+|...+.+ ++.+||+|||||.|||.+..
T Consensus 79 ~~~~l~~~G~~i~~~~~~~~~~-~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 79 WYQRLKENDVNILPGRERDERD-KKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHCCceEcCCccccCCC-ceEEEEECCCCCEEEEEeCC
Confidence 9999999999998877666554 68999999999999998764
No 100
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.46 E-value=4.7e-13 Score=108.68 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=72.6
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC------c-----------cEEEEEEeCCcccc---cCCCCeeEEEE
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK------N-----------AVLELTYNHGVTEY---DKGNGYAQIAI 303 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~------~-----------~~l~l~~~~~~~~~---~~g~g~~hiaf 303 (360)
+++|+.|.|+|++++.+||++ +||++.... . ..+++......... ....|+.|++|
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~----~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f 76 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVT----YFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSPNEGERTGWAHLAF 76 (125)
T ss_pred CceEEEEEecCHHHHHHHHHH----HhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCcccCCCCceEEEEE
Confidence 478999999999999999999 999874211 0 11122111111111 12247899999
Q ss_pred EeC---CHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEE
Q 018138 304 GTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 350 (360)
Q Consensus 304 ~V~---Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 350 (360)
.|+ |+++++++|+++|+++..+|...+.+ .+.++++|||||.|||.
T Consensus 77 ~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 77 SVGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEIT 125 (125)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEeC
Confidence 995 58999999999999999877544432 45678999999999984
No 101
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.46 E-value=1.5e-12 Score=105.73 Aligned_cols=107 Identities=22% Similarity=0.194 Sum_probs=75.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCHHHH
Q 018138 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKT 197 (360)
Q Consensus 118 V~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dld~~ 197 (360)
..|.|+|++++++||++ |||++..+... . .+++..++ ..+.+....... ......|++|.|+|++++
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~~----~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRGD----LELHFFAHPDLD---PATSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcCC----EEEEEEecCcCC---CCCCcceEEEEeCCHHHH
Confidence 35899999999999999 99999754321 2 34454332 356665532211 122345799999999999
Q ss_pred HHHHHHcCCeEe-------cCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 198 VDLVKAKGGKVT-------REPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 198 ~~rL~~~G~~~~-------~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
+++|+++|+++. .++...++|.+ .++|+|||||.|||++.
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQPWGMR-EFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCCCcee-EEEEECCCCCEEEeecC
Confidence 999999999843 33343445644 69999999999999874
No 102
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.45 E-value=1.1e-12 Score=107.27 Aligned_cols=112 Identities=23% Similarity=0.217 Sum_probs=76.9
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCC------CCC-cCCCcceEEE
Q 018138 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV------DKY-DIGTGFGHFG 188 (360)
Q Consensus 116 ~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~------~~~-~~g~g~~hi~ 188 (360)
.+|.|.|+|++++++||++ |||++..+... .. ..++..++ ...+.+...... ... ..+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~--~~--~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSD--EK--AACMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCC--CC--eEEEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 5788999999999999987 99998643221 11 13333332 234555432110 000 1233456999
Q ss_pred EEEC---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 189 IAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 189 f~V~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
|.|+ |+++++++++++|+++..+|...+++ +.+||+|||||.||++.
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~--~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHGFM--YGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCCce--EEEEEECCCCCEEEEEE
Confidence 9998 58899999999999998887766543 35899999999999974
No 103
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.44 E-value=8.5e-13 Score=108.44 Aligned_cols=94 Identities=27% Similarity=0.490 Sum_probs=71.7
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccC-------------------------------CCccEEEEEEeCCcccc
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPE-------------------------------DKNAVLELTYNHGVTEY 292 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~-------------------------------~~~~~l~l~~~~~~~~~ 292 (360)
++.|++|+|+|+++|++||++ +||++.. .....++|+++++..++
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~----vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~ 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYRE----VLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDY 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHH----hcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCC
Confidence 578999999999999999998 7777531 11224566666665556
Q ss_pred cCCCCeeEEEEEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 293 DKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 293 ~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
+.|.+ |++|.|++. ++.++|+++|+++...|. .+++++||||+.|||+.
T Consensus 78 ~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 ELGND--FLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCCC--EEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 66665 667777766 566999999999887554 27899999999999985
No 104
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.44 E-value=8.9e-13 Score=106.92 Aligned_cols=107 Identities=29% Similarity=0.370 Sum_probs=84.8
Q ss_pred CCCceeceeeecCHHHHHHHhhhcceEEeeeccCCCc----cEEEEEEeCC-----cc----cccCCCCeeEEEEEeCCH
Q 018138 242 PEPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN----AVLELTYNHG-----VT----EYDKGNGYAQIAIGTDDV 308 (360)
Q Consensus 242 ~~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~----~~l~l~~~~~-----~~----~~~~g~g~~hiaf~V~Dl 308 (360)
...+.|..|.|.|++++++||++ +|||+.++.. ...-.....+ .. ...++...+++.|.|+|+
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~----vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~~~~~~~p~~~~~~iy~~v~di 82 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEK----VFGWTFEDYFDMGEMRYAVFPADGAGAGGGLMARPGSPPGGGGWVIYFAVDDI 82 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHH----hhCceecccccCCCceEEEEECCCccccceeccCCcCCCCCCCEEEEEecCCh
Confidence 46789999999999999999999 9999976541 1111111111 11 122335678999999999
Q ss_pred HHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 309 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 309 ~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
+++.++++++|++|+.++.+.|+. ++++.+.||.||+|.|.+.+
T Consensus 83 d~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 83 DATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred HHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 999999999999999999999965 89999999999999998754
No 105
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.43 E-value=9.1e-13 Score=109.11 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=75.1
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCCC----------ccEEEEEEeCCcccccCCCCeeEEEEEeC--CHHHHH
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK----------NAVLELTYNHGVTEYDKGNGYAQIAIGTD--DVYKTA 312 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~----------~~~l~l~~~~~~~~~~~g~g~~hiaf~V~--Dl~~~~ 312 (360)
|+||.|.|+|++++.+||++ +||+..... +..+.+.............+.+|++|.|+ |+++++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~----~LG~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dld~~~ 76 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKH----VFMEKLLVLGEKTAYFTIGGTWLALNEEPDIPRNEIRQSYTHIAFTIEDSEFDAFY 76 (131)
T ss_pred CceEEEEECCHHHHHHHHHH----hhCCEEeccCCccceEeeCceEEEEEccCCCCcCCcCccceEEEEEecHHHHHHHH
Confidence 67999999999999999999 999875321 11111111111101111246789999997 499999
Q ss_pred HHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 313 EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 313 ~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
++++++|+++..++.....+ ++.+||+|||||.|||.+..
T Consensus 77 ~~l~~~G~~~~~~~~~~~~~-~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 77 TRLKEAGVNILPGRKRDVRD-RKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHcCCcccCCCccccCc-ceEEEEECCCCCEEEEecCc
Confidence 99999999987655433333 68899999999999998864
No 106
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.43 E-value=1.3e-12 Score=110.10 Aligned_cols=110 Identities=19% Similarity=0.295 Sum_probs=80.6
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCCc--cEEEEEEeCCcc--cc--cCCCCeeEEEEEeCCHHHHH---H
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN--AVLELTYNHGVT--EY--DKGNGYAQIAIGTDDVYKTA---E 313 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~--~~l~l~~~~~~~--~~--~~g~g~~hiaf~V~Dl~~~~---~ 313 (360)
.+++|+.|.|.|++++++||++ +|||+..... ....+....... .. ....++.|++|.|+|++++. +
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~----~LG~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~hiaf~v~d~~~l~~~~~ 78 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYED----VLGFRVSDWLGDQMAFLRCNSDHHSIAIARGPHPSLNHVAFEMPSIDEVMRGIG 78 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHh----cCCCEEEEeeCCeEEEEECCCCcceEEEccCCCCceEEEEEECCCHHHHHHHHH
Confidence 4789999999999999999999 9998753221 122222221111 11 12357899999999877664 8
Q ss_pred HHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcccc
Q 018138 314 AIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFL 356 (360)
Q Consensus 314 ~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 356 (360)
+|+++|+++..++.++..+..+++||+||+||.|||++...-.
T Consensus 79 ~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~~~ 121 (144)
T cd07239 79 RMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELEQV 121 (144)
T ss_pred HHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCceEE
Confidence 9999999998877665554467899999999999999875443
No 107
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.43 E-value=1.3e-12 Score=106.32 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=75.8
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCC---CccE---------EEEEEeC--------Cc--ccccCCCCeeEEE
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPED---KNAV---------LELTYNH--------GV--TEYDKGNGYAQIA 302 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~---~~~~---------l~l~~~~--------~~--~~~~~g~g~~hia 302 (360)
+.|+.|.|+|++++.+||++ +|||+... .... +.+.... +. ......++..|++
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYER----AFGFERRFLHESGDYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIA 76 (125)
T ss_pred CceEEEEEcCHHHHHHHHHH----hhCCeEEeecCCCcEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEE
Confidence 46899999999999999999 99997521 1111 1111100 00 0011123456999
Q ss_pred EEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 303 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 303 f~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
|.|+|+++++++++++|+++..+|...+++ .+.++++|||||.|+++++
T Consensus 77 ~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 77 FVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 999999999999999999999888777765 6789999999999999874
No 108
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.43 E-value=1.2e-12 Score=106.94 Aligned_cols=103 Identities=25% Similarity=0.335 Sum_probs=73.9
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC----------------ccEEEEEEeCCcc-c---c--cCCCCeeEE
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK----------------NAVLELTYNHGVT-E---Y--DKGNGYAQI 301 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~----------------~~~l~l~~~~~~~-~---~--~~g~g~~hi 301 (360)
+++|+.|.|+|++++.+||++ +|||..... ...+++....... . + ..+.+.+|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYED----VLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHH----HhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 578999999999999999999 999876421 1122332211110 0 0 124578899
Q ss_pred EEEeCCHHHHHHHHHHcCCeEeeC-CcccCCCCcEEEEE--ECCCCCeEEEEc
Q 018138 302 AIGTDDVYKTAEAIKLSGGKITRE-PGPLPGINTKITAC--LDPDGWKSVFVD 351 (360)
Q Consensus 302 af~V~Dl~~~~~~l~~~G~~i~~~-p~~~~~~~~~~~~~--~DPdG~~iel~~ 351 (360)
+|.|+|+++++++++++|+++..+ |...+++ .+.+++ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGG-KPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCC-CEEEEecccccCcEEEEecC
Confidence 999999999999999999998875 4333332 355666 799999999975
No 109
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.43 E-value=1.4e-12 Score=104.66 Aligned_cols=99 Identities=26% Similarity=0.399 Sum_probs=73.5
Q ss_pred eceeeecCHHHHHHHhhhcceEEeeeccCCC-----c-cEEEEE------------EeCCccc--ccCCCCeeEEEEEeC
Q 018138 247 QVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-----N-AVLELT------------YNHGVTE--YDKGNGYAQIAIGTD 306 (360)
Q Consensus 247 hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-----~-~~l~l~------------~~~~~~~--~~~g~g~~hiaf~V~ 306 (360)
||.|.|.|++++.+||++ +|||+.... . ..+.+. ....... ...+.+..|++|.|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 76 (119)
T cd07263 1 LVSLYVDDQDKALAFYTE----KLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLVLATD 76 (119)
T ss_pred CceEEeCCHHHHHHHHHh----ccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEEEEeh
Confidence 789999999999999999 999874321 1 111111 0110000 012346789999999
Q ss_pred CHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 307 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 307 Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
|+++++++++++|+++..++...++ ++.+|++||+|+.|||++
T Consensus 77 di~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 77 DIDATYEELKARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHHhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 9999999999999999988854444 689999999999999975
No 110
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.42 E-value=1.2e-12 Score=112.35 Aligned_cols=108 Identities=23% Similarity=0.340 Sum_probs=77.0
Q ss_pred CCCceeceeeecCHHHHHHHhhhcceEEeeeccCCC-----c--cEEEEEEeCCccc----ccCCCCeeEEEEEeCC---
Q 018138 242 PEPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-----N--AVLELTYNHGVTE----YDKGNGYAQIAIGTDD--- 307 (360)
Q Consensus 242 ~~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-----~--~~l~l~~~~~~~~----~~~g~g~~hiaf~V~D--- 307 (360)
|.+++||.|.|+|++++.+||++ +||++.... . ....+........ ...+++++|++|.|+|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~----vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~~~~~~~Hiaf~v~~~~~ 76 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRD----ELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGGNGPRLHHVAFWVPEPHN 76 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHh----ccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecCCCCceeEEEEEcCCHHH
Confidence 46789999999999999999999 999965311 1 1122211111111 1234678999999975
Q ss_pred HHHHHHHHHHcCCe--EeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 308 VYKTAEAIKLSGGK--ITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 308 l~~~~~~l~~~G~~--i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
+++++++|+++|+. +..+|+.++..+.+++|++|||||.||++...
T Consensus 77 v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 77 IIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred HHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 77889999999986 34456555544467899999999999998654
No 111
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=4.8e-13 Score=110.09 Aligned_cols=123 Identities=34% Similarity=0.534 Sum_probs=78.5
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCC---------------CceEEEEEEecCCCCC-
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPE---------------DSHFVVELTYNYGVDK- 177 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~---------------~~~~~lel~~~~~~~~- 177 (360)
.+.|..++|.|+.++..||++++|+.+..+..+.+..+...|++.... ..+..+|+.++.+...
T Consensus 22 ~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes~ 101 (170)
T KOG2944|consen 22 LLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTESP 101 (170)
T ss_pred hhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCCCC
Confidence 345666677777777777777777666654333322222222222100 0122577776544322
Q ss_pred ----Cc----CCCcceEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 178 ----YD----IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 178 ----~~----~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
+. .++|++||||.|+|+++++++|+++|+++...|..... ..++|+.||||+.|||...
T Consensus 102 ~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~--K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 102 PDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKM--KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred cchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccc--cceeEEECCCCCeEEEeec
Confidence 11 23599999999999999999999999997766543222 2479999999999999764
No 112
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.41 E-value=1.8e-12 Score=104.95 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=77.2
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCCc---cEEEEEEe---------CCc---ccccCCCCeeEEEEEeCC
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN---AVLELTYN---------HGV---TEYDKGNGYAQIAIGTDD 307 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~---~~l~l~~~---------~~~---~~~~~g~g~~hiaf~V~D 307 (360)
.+++|+.|.|.|++++.+||++ +|||...... ....+... .+. .....+.+..|++|.+++
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~----~lG~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~~~~ 77 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTR----VLGMEVVRFGEEVGRKALRFGSQKINLHPVGGEFEPAAGSPGPGSDDLCLITEP 77 (125)
T ss_pred cccceEEEEecCHHHHHHHHHH----HhCceeecccccCCceEEEeCCEEEEEecCCCccCcCccCCCCCCceEEEEecc
Confidence 3689999999999999999999 8998753211 11122111 110 001234578999999974
Q ss_pred -HHHHHHHHHHcCCeEeeCCcccCC--CCcEEEEEECCCCCeEEEEc
Q 018138 308 -VYKTAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 308 -l~~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iel~~ 351 (360)
+++++++++++|+++..+|.+.++ +.++.+||+||||+.||+++
T Consensus 78 ~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 78 PIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred cHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 999999999999999888765433 22578999999999999986
No 113
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.41 E-value=2.4e-12 Score=105.45 Aligned_cols=107 Identities=16% Similarity=0.163 Sum_probs=77.7
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEEEeCCcc--cc-cCCCCeeEEEEEeCC---HHHHHHHH
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELTYNHGVT--EY-DKGNGYAQIAIGTDD---VYKTAEAI 315 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~~~~~~~--~~-~~g~g~~hiaf~V~D---l~~~~~~l 315 (360)
.++.||.|.|+|++++.+||++ +||++.... .....+....... .. ...++..|++|.|+| ++++++++
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~----vLG~~~~~~~~~~~~l~~~~~~~~i~l~~~~~~~~~iaf~v~~~~dv~~~~~~l 80 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATD----ILGLQVAERTAKATYFRSDARDHTLVYIEGDPAEQASGFELRDDDALESAATEL 80 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHh----ccCceeccCCCCeEEEEcCCccEEEEEEeCCCceEEEEEEECCHHHHHHHHHHH
Confidence 4689999999999999999999 999986432 2233333211110 11 122567899999975 99999999
Q ss_pred HHcCCeEeeCCcccC--CCCcEEEEEECCCCCeEEEEcCc
Q 018138 316 KLSGGKITREPGPLP--GINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 316 ~~~G~~i~~~p~~~~--~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
+++|+++..++.... .+..+++||+|||||.||++...
T Consensus 81 ~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 81 EQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred HHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 999999987664321 12256789999999999998654
No 114
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.40 E-value=2.5e-12 Score=103.97 Aligned_cols=100 Identities=20% Similarity=0.173 Sum_probs=73.1
Q ss_pred eceeeecCHHHHHHHhhhcceEEeeeccCCCc------------cEEEEEEeCCcc-c---ccCCCCeeEEEEEeCCHHH
Q 018138 247 QVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN------------AVLELTYNHGVT-E---YDKGNGYAQIAIGTDDVYK 310 (360)
Q Consensus 247 hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~------------~~l~l~~~~~~~-~---~~~g~g~~hiaf~V~Dl~~ 310 (360)
+..|.|.|++++.+||++ +|||+..... ..+.+....... . ........|++|.|+|+++
T Consensus 4 ~~~l~v~D~~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~did~ 79 (119)
T cd08359 4 YPVIVTDDLAETADFYVR----HFGFTVVFDSDWYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQGLILNFEVDDVDA 79 (119)
T ss_pred eeEEEECCHHHHHHHHHH----hhCcEEEeccCcEEEEecCCCceEEEEccCCCCCCcchhcccCCceEEEEEEECCHHH
Confidence 567999999999999999 9998743211 111111110000 0 0111233599999999999
Q ss_pred HHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 311 TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 311 ~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
++++++++|+++..+|...+.+ .+.++++||||+.|||+|
T Consensus 80 ~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 80 EYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 9999999999999888777764 689999999999999986
No 115
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.40 E-value=2.2e-12 Score=102.31 Aligned_cols=99 Identities=26% Similarity=0.286 Sum_probs=73.8
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCCCc----cEEEEEEeCC-cc------cc----cCCCCeeEEEEEeCCHH
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN----AVLELTYNHG-VT------EY----DKGNGYAQIAIGTDDVY 309 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~----~~l~l~~~~~-~~------~~----~~g~g~~hiaf~V~Dl~ 309 (360)
++|+.|.|.|++++.+||++ +|||...... ....+....+ .. .. ..+.+..|++|.|+|++
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d~~ 76 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTD----VLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEEDPPDALPEGPGRDDHIAFRVDDLD 76 (114)
T ss_pred CCeEEEecCCHHHHHHHHHH----ccCCcccCcCCCCCCceEEEeCCCcEEEEEecCCCccccCCCcccceEEEEeCCHH
Confidence 58999999999999999999 9999754321 1122222111 10 01 12346789999999999
Q ss_pred HHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEE
Q 018138 310 KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 349 (360)
Q Consensus 310 ~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 349 (360)
+++++++++|+++..++.+.++ .+.++++||+|+.|||
T Consensus 77 ~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 77 AFRARLKAAGVPYTESDVPGDG--VRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHcCCCcccccCCCCC--ccEEEEECCCCCEEeC
Confidence 9999999999999988765222 5789999999999996
No 116
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.40 E-value=3.4e-12 Score=103.78 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=76.9
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC--ccEEEEEEeCCcc--cc--cCCCCeeEEEEEeC---CHHHHHHH
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK--NAVLELTYNHGVT--EY--DKGNGYAQIAIGTD---DVYKTAEA 314 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~--~~~l~l~~~~~~~--~~--~~g~g~~hiaf~V~---Dl~~~~~~ 314 (360)
+++||.|.|+|+++|.+||++ +||++.... .....+....... .. ...++..|++|.|+ |+++++++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~----~LG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~v~~~~dl~~~~~~ 77 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATD----VLGLQVGDRPEDGALYLRMDDRAWRIAVHPGEADDLAYAGWEVADEAALDALAAR 77 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHh----ccCceeccCCCCCeEEEEccCCceEEEEEeCCCCceeEEEEEECCHHHHHHHHHH
Confidence 689999999999999999999 999975432 1222232211111 11 12357789999996 58999999
Q ss_pred HHHcCCeEeeCCccc--CCCCcEEEEEECCCCCeEEEEcCc
Q 018138 315 IKLSGGKITREPGPL--PGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 315 l~~~G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
|+++|+++...|.+. ..+.++.+||+|||||.|||+...
T Consensus 78 l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 78 LRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 999999998765422 222257899999999999998653
No 117
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.38 E-value=3.3e-12 Score=105.69 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCCc--cE-----EEEEEeCC----cc-c-ccCCCCeeEEEEEeC--C
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN--AV-----LELTYNHG----VT-E-YDKGNGYAQIAIGTD--D 307 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~--~~-----l~l~~~~~----~~-~-~~~g~g~~hiaf~V~--D 307 (360)
.+++|+.|.|+|++++.+||++ +||++..... .. .......+ .. . ....++.+|++|.|+ |
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~Hiaf~v~~~~ 78 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQN----IFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSLQERTYNHIAFKISDSD 78 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHH----HhCCeeEEecccccccccceeEEEcCCeEEEEecCCCCCCCCceEEEEEcCHHH
Confidence 4689999999999999999999 9998642110 00 00000000 00 0 011236899999997 7
Q ss_pred HHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 308 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 308 l~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
++++.++|+++|+++..+. +...+.++.+||+|||||.|||....
T Consensus 79 ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 79 VDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred HHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 9999999999999976433 22333368999999999999998764
No 118
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.38 E-value=3.1e-12 Score=103.80 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=77.9
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEEEeC--Ccc--cc--cCCCCeeEEEEEe---CCHHHHH
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELTYNH--GVT--EY--DKGNGYAQIAIGT---DDVYKTA 312 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~~~~--~~~--~~--~~g~g~~hiaf~V---~Dl~~~~ 312 (360)
.++.|+.|.|+|++++++||++ +|||+.... .....+.... ... .. ...++..|++|.| +|+++++
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hi~~~v~~~~dv~~~~ 78 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVD----VLGLVETEEDDDRIYLRGLEEFIHHSLVLTKAPVAGLGHIAFRVRSEEDLDKAE 78 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHh----ccCCEEeccCCCeEEEEecCCCceEEEEEeeCCCCceeEEEEECCCHHHHHHHH
Confidence 4789999999999999999999 999976432 1222232111 101 11 1235789999999 4788999
Q ss_pred HHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 313 EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 313 ~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
++++++|+++...|.....+.++.+|++||||+.||++..
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 79 AFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred HHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 9999999999876544443335789999999999999864
No 119
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.38 E-value=4.4e-12 Score=103.56 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=75.8
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEEEeCCc-c---cccCCCCeeEEEEEeC--CHHHHHHHHH
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELTYNHGV-T---EYDKGNGYAQIAIGTD--DVYKTAEAIK 316 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~~~~~~-~---~~~~g~g~~hiaf~V~--Dl~~~~~~l~ 316 (360)
++.|+.|.|+|+++|++||++ +|||+.... .....+....+. . ......+..|++|.|+ |+++++++++
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~h~a~~v~~~dl~~~~~~l~ 79 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAE----ILGLPWAKPFGPFAVVKLDNGVSLDFAQPDGEIPPQHYAFLVSEEEFDRIFARIR 79 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHH----hcCCEeeeccCCEEEEEcCCCcEEEEecCCCCCCcceEEEEeCHHHHHHHHHHHH
Confidence 578999999999999999999 999875432 111111111110 0 1112235689999886 6999999999
Q ss_pred HcCCeEeeCCccc------CCCCcEEEEEECCCCCeEEEEcC
Q 018138 317 LSGGKITREPGPL------PGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 317 ~~G~~i~~~p~~~------~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
++|+++..+|... ...+++.+||+|||||.|||++.
T Consensus 80 ~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 80 ERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 9999998776543 12336999999999999999986
No 120
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.38 E-value=5.1e-12 Score=101.13 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=74.1
Q ss_pred ceeeecCHHHHHHHhhhcceEEeeeccCCCccE-EEEEEeCC-ccc--c----cCCCCeeEEEEEeCCHHHHHHHHHHcC
Q 018138 248 VMLRVGDLDRAINFYKKYTIAVMGYGPEDKNAV-LELTYNHG-VTE--Y----DKGNGYAQIAIGTDDVYKTAEAIKLSG 319 (360)
Q Consensus 248 v~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~~~-l~l~~~~~-~~~--~----~~g~g~~hiaf~V~Dl~~~~~~l~~~G 319 (360)
..|.|+|++++.+||++ +|||+....... ..+....+ ... . ..+....|++|.|+|+++++++++++|
T Consensus 4 ~~l~v~Dl~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~d~~~~~~~l~~~G 79 (112)
T cd07238 4 PNLPVADPEAAAAFYAD----VLGLDVVMDHGWIATFASPQNMTVQVSLATEGGTATVVPDLSIEVDDVDAALARAVAAG 79 (112)
T ss_pred ceEecCCHHHHHHHHHH----hcCceEEEcCCceEEEeecCCCCcEEEEecCCCCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 46899999999999999 999985422111 11111111 110 1 112346799999999999999999999
Q ss_pred CeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 320 GKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 320 ~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
+++..+|...+++ .+.+++.||+||.|+++++
T Consensus 80 ~~~~~~~~~~~~g-~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 80 FAIVYGPTDEPWG-VRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred CeEecCCccCCCc-eEEEEEECCCCCEEEEEEc
Confidence 9999888776654 5889999999999999874
No 121
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.37 E-value=3.3e-12 Score=103.33 Aligned_cols=107 Identities=24% Similarity=0.313 Sum_probs=78.3
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEEEeCCcc---cc--cCCCCeeEEEEEe---CCHHHHHH
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELTYNHGVT---EY--DKGNGYAQIAIGT---DDVYKTAE 313 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~~~~~~~---~~--~~g~g~~hiaf~V---~Dl~~~~~ 313 (360)
.+|+|+.|.|+|++++++||++ +|||+.... .....+....... .. ...++.+|++|.| ++++++++
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~ 77 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYRE----VWGLSVVAEDDGIVYLRATGSEHHILRLRRSDRNRLDVVSFSVASRADVDALAR 77 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHh----CcCcEEEEecCCEEEEECCCCccEEEEeccCCCCCCceEEEEeCCHHHHHHHHH
Confidence 4689999999999999999999 999975321 1222332211110 11 1234678999999 57899999
Q ss_pred HHHHcCCeEeeCCcccC-CCCcEEEEEECCCCCeEEEEcCc
Q 018138 314 AIKLSGGKITREPGPLP-GINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 314 ~l~~~G~~i~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
+++++|+++..+|.... ..+++.++|+||+||.|||+...
T Consensus 78 ~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 78 QVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred HHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 99999999988764332 22368899999999999998764
No 122
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.37 E-value=6e-12 Score=103.07 Aligned_cols=104 Identities=23% Similarity=0.317 Sum_probs=76.0
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEe---eeccCCC------------ccEEEEEEeCCccc---ccCCCCeeEEEEEe
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVM---GYGPEDK------------NAVLELTYNHGVTE---YDKGNGYAQIAIGT 305 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~l---G~~~~~~------------~~~l~l~~~~~~~~---~~~g~g~~hiaf~V 305 (360)
+++||.+.|.|++++.+||++ +| ||+.... ...+.+........ ...+.+.+|++|.|
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~----~l~~~G~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~hia~~v 76 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDW----LLGLLGFEEVKEWEDGRSWRAGDGGTYLVLQQADGESAGRHDRRNPGLHHLAFRA 76 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHH----HHhhcCCEEEEeeccCceEEecCCceEEEEEecccCCCcccccCCcCeeEEEEEc
Confidence 478999999999999999999 88 9875321 11222221111110 11235789999999
Q ss_pred C---CHHHHHHHHHHcCCeEeeCCccc--CCCCcEEEEEECCCCCeEEEEc
Q 018138 306 D---DVYKTAEAIKLSGGKITREPGPL--PGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 306 ~---Dl~~~~~~l~~~G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iel~~ 351 (360)
+ |+++++++++++|+++...+... .....+.+|++||||++|||+.
T Consensus 77 ~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 77 PSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred CCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 6 58899999999999999887653 2233689999999999999985
No 123
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.36 E-value=8e-12 Score=100.24 Aligned_cols=97 Identities=29% Similarity=0.373 Sum_probs=71.8
Q ss_pred ceeeecCHHHHHHHhhhcceEEeeeccCCCcc-E----------EEEEEeCCcccc-cCCCCeeEEEEEeCC---HHHHH
Q 018138 248 VMLRVGDLDRAINFYKKYTIAVMGYGPEDKNA-V----------LELTYNHGVTEY-DKGNGYAQIAIGTDD---VYKTA 312 (360)
Q Consensus 248 v~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~~-~----------l~l~~~~~~~~~-~~g~g~~hiaf~V~D---l~~~~ 312 (360)
+.|.|+|++++.+||++ +|||+...... . +.+......... ....+.+|++|.|++ +++++
T Consensus 2 ~~l~v~d~~~a~~FY~~----~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 77 (114)
T cd07261 2 VLLYVEDPAASAEFYSE----LLGREPVELSPTFALFVLGSGVKLGLWSRHTVEPASDATGGGSELAFMVDDGAAVDALY 77 (114)
T ss_pred EEEEECCHHHHHHHHHH----HcCCCccCCCCceEEEEeCCCcEEEEeeccccCCCCCCCCCceEEEEEcCCHHHHHHHH
Confidence 57899999999999999 99998543211 1 111111111101 123467899999975 88999
Q ss_pred HHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEE
Q 018138 313 EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 350 (360)
Q Consensus 313 ~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 350 (360)
++++++|+++..+|...+. ++.++|+|||||.||++
T Consensus 78 ~~~~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 78 AEWQAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 9999999999998887776 46789999999999986
No 124
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.36 E-value=3.6e-12 Score=103.62 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=75.3
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCCc-cEEEEEEeC--Ccc--c--ccCCCCeeEEEEEeC---CHHHHH
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN-AVLELTYNH--GVT--E--YDKGNGYAQIAIGTD---DVYKTA 312 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~-~~l~l~~~~--~~~--~--~~~g~g~~hiaf~V~---Dl~~~~ 312 (360)
.+++|+.|.|+|++++.+||++ +||++..... ....+.... ... . ....+++.|++|.|+ |++++.
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~----~lG~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~h~af~v~~~~~v~~~~ 80 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTD----VLGLEETGREGQSVYLRAWGDYEHHSLKLTESPEAGLGHIAWRASSPEALERRV 80 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHh----CcCCEEEeecCCeEEEEeccCCCccEEEEeeCCCCceEEEEEEcCCHHHHHHHH
Confidence 5789999999999999999999 9999754321 122222111 111 1 123468899999996 688999
Q ss_pred HHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 313 EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 313 ~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
++++++|+++...+...+. +..+||+|||||.||++-.
T Consensus 81 ~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 81 AALEASGLGIGWIEGDPGH--GKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred HHHHHcCCccccccCCCCC--cceEEEECCCCCEEEEEEe
Confidence 9999999998554433333 5678999999999999864
No 125
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.36 E-value=1.1e-11 Score=99.81 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=72.2
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCHHHHH
Q 018138 119 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTV 198 (360)
Q Consensus 119 ~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dld~~~ 198 (360)
.|.|+|++++++||++ |||++..+. .. .+++..+. ..+.+....... ..+..+++|.|+|+++++
T Consensus 6 ~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~--~~~l~~~~----~~l~l~~~~~~~----~~~~~~~~~~v~did~~~ 70 (113)
T cd08356 6 FIPAKDFAESKQFYQA-LGFELEWEN----DN--LAYFRLGN----CAFYLQDYYVKD----WAENSMLHLEVDDLEAYY 70 (113)
T ss_pred ccccccHHHHHHHHHH-hCCeeEecC----CC--EEEEEcCC----EEEEeecCCCcc----cccCCEEEEEECCHHHHH
Confidence 3889999999999988 999998653 12 35666542 233333211111 122357899999999999
Q ss_pred HHHHHcCCeEe-----cCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 199 DLVKAKGGKVT-----REPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 199 ~rL~~~G~~~~-----~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
++|+++|+++. .++...++|.+ .++|+|||||.|++.+
T Consensus 71 ~~l~~~G~~~~~~~~~~~~~~~~~g~r-~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 71 EHIKALGLPKKFPGVKLPPITQPWWGR-EFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHcCCcccccceecCccccCCCcE-EEEEECCCccEEEeeC
Confidence 99999998743 34444456654 6999999999999864
No 126
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.36 E-value=1.7e-11 Score=98.99 Aligned_cols=110 Identities=26% Similarity=0.342 Sum_probs=77.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCC------CCCCcCCCcceEEEEEE
Q 018138 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG------VDKYDIGTGFGHFGIAV 191 (360)
Q Consensus 118 V~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~------~~~~~~g~g~~hi~f~V 191 (360)
|.|.|+|++++.+||+++|||++..+. ... ..++..+ ...+++..... ......+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~--~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDG--VAFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCc--eEEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 679999999999999999999987541 122 3455542 23566554221 11111222334566655
Q ss_pred ---CCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 192 ---EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 192 ---~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
+|++++++++++.|+++..++...++|++ .++++||+||.||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWGGY-SGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCCce-EEEEECCCCCEEEEee
Confidence 57999999999999999888777666654 5899999999999974
No 127
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.35 E-value=7.7e-12 Score=100.47 Aligned_cols=104 Identities=22% Similarity=0.348 Sum_probs=78.2
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCCc-cEEEEEEe-CCccc--c--cCCCCeeEEEEEeC---CHHHHHHH
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN-AVLELTYN-HGVTE--Y--DKGNGYAQIAIGTD---DVYKTAEA 314 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~-~~l~l~~~-~~~~~--~--~~g~g~~hiaf~V~---Dl~~~~~~ 314 (360)
+++|+.|.|+|++++.+||++ +|||+..... ....+... .+... . ....+..|++|.|+ |++++.++
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~----~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~v~~~~~~ 77 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTD----VLGLTVLDRDAGSVYLRCSEDDHHSLVLTEGDEPGVDALGFEVASEEDLEALAAH 77 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHh----ccCcEEEeecCCeEEEecCCCCcEEEEEEeCCCCCceeEEEEcCCHHHHHHHHHH
Confidence 689999999999999999999 9999764321 12222221 11111 1 12357899999996 68899999
Q ss_pred HHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 315 IKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 315 l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
++++|+++...+...+++ ++.+|++||+|+.+|++..
T Consensus 78 l~~~g~~~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 78 LEAAGVAPEEASDPEPGV-GRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred HHHcCCceEEcCccCCCC-ceEEEEECCCCCEEEEEEc
Confidence 999999999887645543 6889999999999999865
No 128
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.35 E-value=6.5e-13 Score=107.87 Aligned_cols=102 Identities=30% Similarity=0.377 Sum_probs=71.8
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCCcc------EEE------------EEEeCCcccccCC-----CCeeE
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKNA------VLE------------LTYNHGVTEYDKG-----NGYAQ 300 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~~------~l~------------l~~~~~~~~~~~g-----~g~~h 300 (360)
+|+||+|.|+|++++.+||++ +||++...... ... +...........+ .+.+|
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 76 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTD----VLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHH 76 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHH----TTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEE
T ss_pred CeEEEEEEcCCHHHHHHHHHH----HhCCcEEeeeccccccccccceeecccccceeeeeecccccccccccccccccee
Confidence 479999999999999999999 99987532211 111 1111100000000 02356
Q ss_pred EEEEe---CCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEE
Q 018138 301 IAIGT---DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 349 (360)
Q Consensus 301 iaf~V---~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 349 (360)
+++.+ +|+++++++|++.|+++..+|.+........+|++||+|+.|||
T Consensus 77 i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 77 IAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 66665 57889999999999999999988877655667899999999997
No 129
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.35 E-value=9.6e-12 Score=101.12 Aligned_cols=99 Identities=24% Similarity=0.310 Sum_probs=74.1
Q ss_pred ceeeecCHHHHHHHhhhcceEEeeeccCC-----Ccc--EEEEEEe---------CCcccc----cCCCCeeEEEEEeCC
Q 018138 248 VMLRVGDLDRAINFYKKYTIAVMGYGPED-----KNA--VLELTYN---------HGVTEY----DKGNGYAQIAIGTDD 307 (360)
Q Consensus 248 v~L~V~D~e~a~~FY~~~~~~~lG~~~~~-----~~~--~l~l~~~---------~~~~~~----~~g~g~~hiaf~V~D 307 (360)
-.|.|+|++++.+||++ +||++... ... ...+... ...... ..+++..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~----~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTD----AFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHH----hcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 46889999999999999 99987531 111 1122211 100001 133467899999999
Q ss_pred HHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 308 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 308 l~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
+++++++++++|+++..+|...+++ .+.++++|||||+|+|.+
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 9999999999999999998877765 688999999999999975
No 130
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.34 E-value=9.1e-12 Score=106.52 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=73.6
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCCc-cEEEEEEeC---Cc-cc----------ccCCCCeeEEEEEeCC-
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN-AVLELTYNH---GV-TE----------YDKGNGYAQIAIGTDD- 307 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~-~~l~l~~~~---~~-~~----------~~~g~g~~hiaf~V~D- 307 (360)
+++||.|.|+|++++.+||++ +|||+..... ..+.+.... +. .. .....++.|++|.|+|
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~----~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~d~ 76 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTD----VLGFREVGEEGDRVRLEEGGGGPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVPDD 76 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHH----hcCCEEEeeeCCEEEEEecCCCCCCEEEEEeCCCCCCCcccCCceEEEEEECCCH
Confidence 478999999999999999999 9998753221 111111110 10 00 1112468899999988
Q ss_pred --HHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 308 --VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 308 --l~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
+++++++|+++|+++.. +...++ .+.+||+||||+.|||+...
T Consensus 77 ~dvd~~~~~L~~~Gv~~~~-~~~~~~--~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 77 EELEAWKERLEALGLPVSG-IVDRFY--FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred HHHHHHHHHHHHCCCCccc-cccccc--EEEEEEECCCCcEEEEEECC
Confidence 89999999999998643 333333 57899999999999998764
No 131
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.34 E-value=1.3e-11 Score=102.05 Aligned_cols=105 Identities=22% Similarity=0.343 Sum_probs=77.9
Q ss_pred eeceeeecCHHHHHHHhhhcceEEeeeccCCCc------cEEEEEEeCCcc--c-c-c-CCCCeeEEEEEeCCHH---HH
Q 018138 246 CQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN------AVLELTYNHGVT--E-Y-D-KGNGYAQIAIGTDDVY---KT 311 (360)
Q Consensus 246 ~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~------~~l~l~~~~~~~--~-~-~-~g~g~~hiaf~V~Dl~---~~ 311 (360)
+||.|.|+|++++.+||++ +||++..... ....+..+.... . . . ...++.|++|.|+|++ ++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~hl~~~v~d~~~~~~~ 76 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTE----VLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPGPERPGLHHVAFEVESLDDILRA 76 (131)
T ss_pred CcEEEEcCCHHHHHHHHHh----cCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcCCCCCCeeEEEEEcCCHHHHHHH
Confidence 5899999999999999999 9998753211 112222221111 1 1 1 1468899999998764 78
Q ss_pred HHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcc
Q 018138 312 AEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 354 (360)
Q Consensus 312 ~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 354 (360)
+++++++|+++..+|...+.+..++++|+||+|+.|||.+...
T Consensus 77 ~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 77 ADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 8999999999998887666554688999999999999998743
No 132
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.34 E-value=6.7e-12 Score=100.38 Aligned_cols=101 Identities=23% Similarity=0.327 Sum_probs=71.0
Q ss_pred eceeeecCHHHHHHHhhhcceEEeeeccCCC---ccEEEE-----EEeCCcccccCCCCeeEEEEEe--CCHHHHHHHHH
Q 018138 247 QVMLRVGDLDRAINFYKKYTIAVMGYGPEDK---NAVLEL-----TYNHGVTEYDKGNGYAQIAIGT--DDVYKTAEAIK 316 (360)
Q Consensus 247 hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~---~~~l~l-----~~~~~~~~~~~g~g~~hiaf~V--~Dl~~~~~~l~ 316 (360)
||.|.|+|++++.+||++ +||++.... ...+.+ ...........+.+..|++|.| +|+++++++++
T Consensus 1 Hv~l~v~d~~~s~~Fy~~----~lg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hiaf~v~~~d~~~~~~~l~ 76 (113)
T cd08345 1 HITLIVKDLNKSIAFYRD----ILGAELIYSSSKEAYFELAGLWICLMEEDSLQGPERTYTHIAFQIQSEEFDEYTERLK 76 (113)
T ss_pred CeeEEECCHHHHHHHHHH----hcCCeeeeccCceeEEEecCeEEEeccCCCcCCCCCCccEEEEEcCHHHHHHHHHHHH
Confidence 789999999999999999 999875322 111211 1111100001234678999999 57999999999
Q ss_pred HcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 317 LSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 317 ~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
++|+++...+...+. .++.+|++||||+.||++..
T Consensus 77 ~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 77 ALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HcCCccCCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 999998754332222 26889999999999999853
No 133
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.32 E-value=1.7e-11 Score=99.92 Aligned_cols=102 Identities=27% Similarity=0.421 Sum_probs=73.2
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCCCc-------c----------EEEEEEeCCc-cc-----ccCCCCeeEE
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN-------A----------VLELTYNHGV-TE-----YDKGNGYAQI 301 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~-------~----------~l~l~~~~~~-~~-----~~~g~g~~hi 301 (360)
+.||.|.|+|++++.+||++ +|||...... . .+++...... .. ...+++..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRD----VLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHH----hhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 57999999999999999999 9999863211 0 1111111111 01 1235788999
Q ss_pred EEEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCC---CCeEEEEc
Q 018138 302 AIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPD---GWKSVFVD 351 (360)
Q Consensus 302 af~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPd---G~~iel~~ 351 (360)
+|.|+|+++++++++++|+++..+|...+.+ ++.+++.||+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~-g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAG-GKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCC-CCEEEEEecCCCceEEEEecC
Confidence 9999999999999999999999887644444 4445555555 99999975
No 134
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.31 E-value=1.1e-11 Score=100.92 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=74.0
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEEEeCCc------ccccCCCCeeEEEEEe--CCHHHHHHH
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELTYNHGV------TEYDKGNGYAQIAIGT--DDVYKTAEA 314 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~~~~~~------~~~~~g~g~~hiaf~V--~Dl~~~~~~ 314 (360)
++.|+.|.|+|++++.+||++ +||++.... .....+...... ...+..++..|++|.+ +|+++++++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~----vLG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~hi~f~v~~~dl~~~~~~ 76 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVD----LLGFKLHVRWDKGAYLEAGDLWLCLSVDANVGPAKDYTHYAFSVSEEDFASLKEK 76 (121)
T ss_pred CcceEEEEECCHHHHHHHHHH----hcCCEEEEecCCceEEecCCEEEEEecCCCCCCCCCeeeEEEEeCHHHHHHHHHH
Confidence 478999999999999999999 999975321 111112111000 0012245688999998 589999999
Q ss_pred HHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 315 IKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 315 l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
++++|+++..++.. . ++.+||+|||||.|||+...
T Consensus 77 l~~~G~~~~~~~~~--~--~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 77 LRQAGVKEWKENTS--E--GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHcCCcccCCCCC--C--ccEEEEECCCCCEEEEEeCC
Confidence 99999998765432 2 46899999999999998764
No 135
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.30 E-value=2.5e-11 Score=98.70 Aligned_cols=102 Identities=26% Similarity=0.279 Sum_probs=71.5
Q ss_pred ceeceeeecCHHHHHHHhhhcceEE---eeeccCCC--ccEEEEEEeCCcc----------cccCCCCeeEEEEEeCC--
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAV---MGYGPEDK--NAVLELTYNHGVT----------EYDKGNGYAQIAIGTDD-- 307 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~---lG~~~~~~--~~~l~l~~~~~~~----------~~~~g~g~~hiaf~V~D-- 307 (360)
+.|++|.|+|++++.+||++ + ||+..... ...+.+....+.. ......+..|++|.|+|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~----~f~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~hi~f~v~~~~ 76 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDA----VLAPLGIKRVMEDGPGAVGYGKGGGGPDFWVTKPFDGEPATAGNGTHVAFAAPSRE 76 (123)
T ss_pred CcEEEEecCcHHHHHHHHHH----HHhhcCceEEeecCCceeEeccCCCCceEEEeccccCCCCCCCCceEEEEECCCHH
Confidence 57999999999999999998 6 57653211 1122221110000 00112345799999976
Q ss_pred -HHHHHHHHHHcCCeEeeCCcccCC--CCcEEEEEECCCCCeEEEE
Q 018138 308 -VYKTAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFV 350 (360)
Q Consensus 308 -l~~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iel~ 350 (360)
+++++++++++|+++..+|...+. ...+.+||+|||||.|||+
T Consensus 77 ~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 77 AVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred HHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 788999999999999888876653 3346799999999999986
No 136
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.30 E-value=1.6e-11 Score=105.92 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=77.2
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCC-----c--cEEEEEEeCCcc--cc-----cCCCCeeEEEEEeCC-
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-----N--AVLELTYNHGVT--EY-----DKGNGYAQIAIGTDD- 307 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-----~--~~l~l~~~~~~~--~~-----~~g~g~~hiaf~V~D- 307 (360)
.+++|+.|.|+|++++.+||++ +|||+..+. . ....+..+.... .. ....+++|++|.|+|
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~----vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~hiaf~v~~~ 80 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEE----VLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPAGARGRLHHLAYALDTR 80 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHH----ccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCCCCCCCceEEEEECCCH
Confidence 5789999999999999999999 999974211 0 112222111110 01 112367899999975
Q ss_pred --HHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 308 --VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 308 --l~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
+++++++|+++|+++..+|..++.....++|++||||+.|||+..
T Consensus 81 ~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 81 EDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred HHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 558889999999999878876665445679999999999999887
No 137
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.30 E-value=1.1e-11 Score=98.23 Aligned_cols=96 Identities=25% Similarity=0.343 Sum_probs=70.7
Q ss_pred eeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEEEe----C---Ccc----cccCCCCeeEEEEEeCCHHHHHHHHHH
Q 018138 250 LRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELTYN----H---GVT----EYDKGNGYAQIAIGTDDVYKTAEAIKL 317 (360)
Q Consensus 250 L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~~~----~---~~~----~~~~g~g~~hiaf~V~Dl~~~~~~l~~ 317 (360)
|.|+|++++++||++ +|||+.... .....+... . ... ......+..|++|.|+|++++++++++
T Consensus 1 l~v~d~~~a~~FY~~----~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dv~~~~~~l~~ 76 (108)
T PF12681_consen 1 LPVSDLEAAAAFYED----VLGFEVVFDDPDYVDFSLGFRFHDGVIEFLQFPDPPGPPGGGFHLCFEVEDVDALYERLKE 76 (108)
T ss_dssp EEESSHHHHHHHHHH----TTTSEEEEEETSEEEEEETEEEEEEEEEEEEEESSSSSSSSEEEEEEEESHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHH----hcCCEEEEeCCCeEEEEeccchhhhhHHHccCCccccCCCceeEEEEEEcCHHHHHHHHHH
Confidence 679999999999999 999975431 111111110 0 000 112245789999999999999999999
Q ss_pred cCCeEeeCCcccCCCCcEEEEEECCCCCeEEEE
Q 018138 318 SGGKITREPGPLPGINTKITACLDPDGWKSVFV 350 (360)
Q Consensus 318 ~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 350 (360)
+|+++..+|...+++ .+.+++.|||||.|||+
T Consensus 77 ~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 77 LGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp TTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred CCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 999999988877774 69999999999999986
No 138
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.30 E-value=3.4e-11 Score=98.01 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=74.3
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEEE-----------eCCcc-cccCCCCeeEEEEEeC---C
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELTY-----------NHGVT-EYDKGNGYAQIAIGTD---D 307 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~~-----------~~~~~-~~~~g~g~~hiaf~V~---D 307 (360)
+++|+.|.|.|++++.+||++ +|||..... .....+.. ..+.. ......+..|++|.|+ |
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~----~lG~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~~~~~ 77 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQD----VLGLEVLERTDSTAVLGTGGKRPLLVLEEDPDAPPAPPGATGLYHFAILLPSRAD 77 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHh----ccCcEEEEcCCCEEEEecCCCeEEEEEEeCCCCCcccCCCCcEEEEEEECCCHHH
Confidence 588999999999999999999 999875322 11222221 11110 0112357889999996 5
Q ss_pred HHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 308 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 308 l~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
+++++++++++|+++.. +..++. .+.+|++|||||+|||....
T Consensus 78 v~~~~~~l~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 78 LAAALRRLIELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred HHHHHHHHHHcCCceec-cccccc--eeEEEEECCCCCEEEEEEec
Confidence 89999999999998754 334444 47899999999999998654
No 139
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.30 E-value=1.6e-11 Score=99.57 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=70.9
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC----c----cEEEEEEe---CCc----------cc-c-cCCCCeeE
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK----N----AVLELTYN---HGV----------TE-Y-DKGNGYAQ 300 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~----~----~~l~l~~~---~~~----------~~-~-~~g~g~~h 300 (360)
+++|+.|.|.|++++.+||++ +|||+.... . ..+.+... .+. .. . ....+..|
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~h 76 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTD----VLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHH 76 (126)
T ss_pred CcccEEEEcCChhHhHHHHHH----ccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEE
Confidence 478999999999999999999 999874311 0 11111111 010 00 0 11235789
Q ss_pred EEEEeC---CHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEE
Q 018138 301 IAIGTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 350 (360)
Q Consensus 301 iaf~V~---Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 350 (360)
++|.|+ |+++++++++++|+++...+.. . ..+.+|++||+|+.|||+
T Consensus 77 i~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 77 IAFSVPSEASLDAWRERLRAAGVPVSGVVDH-F--GERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCcccceEee-c--ceEEEEEECCCCCEEEeC
Confidence 999997 5799999999999998764432 2 268899999999999985
No 140
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.30 E-value=2.8e-11 Score=96.30 Aligned_cols=98 Identities=23% Similarity=0.299 Sum_probs=70.9
Q ss_pred eeeecCHHHHHHHhhhcceEEeeeccCCC---ccEEEEEEeCC------ccccc--CCCCeeEEEEEeCCHHHHHHHHHH
Q 018138 249 MLRVGDLDRAINFYKKYTIAVMGYGPEDK---NAVLELTYNHG------VTEYD--KGNGYAQIAIGTDDVYKTAEAIKL 317 (360)
Q Consensus 249 ~L~V~D~e~a~~FY~~~~~~~lG~~~~~~---~~~l~l~~~~~------~~~~~--~g~g~~hiaf~V~Dl~~~~~~l~~ 317 (360)
.|.|+|++++.+||++ +|||+.... .....+..... ..... ...+.+|++|.|+|++++++++++
T Consensus 3 ~i~v~d~~~s~~FY~~----~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (112)
T cd08349 3 VLPVSDIERSLAFYRD----VLGFEVDWEHPEPGYAFLSRGGAQLMLSEHDGDEPVPLGRGGSVYIEVEDVDALYAELKA 78 (112)
T ss_pred EEEECCHHHHHHHHHh----ccCeEEEEEcCCCcEEEEEeCCEEEEEeccCCCCCCCCCCcEEEEEEeCCHHHHHHHHHH
Confidence 5899999999999999 999874221 11222211100 00011 234667999999999999999999
Q ss_pred cCCe-EeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 318 SGGK-ITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 318 ~G~~-i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
+|++ +..++...+++ .+.++++||+|+.|||+|
T Consensus 79 ~G~~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 79 KGADLIVYPPEDQPWG-MREFAVRDPDGNLLRFGE 112 (112)
T ss_pred cCCcceecCccCCCcc-cEEEEEECCCCCEEEecC
Confidence 9999 66667655553 588999999999999986
No 141
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.29 E-value=3e-11 Score=97.12 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=74.3
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEEEeCCccc---cc--CCCCeeEEEEEeCCHHHHHHHHH
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELTYNHGVTE---YD--KGNGYAQIAIGTDDVYKTAEAIK 316 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~~~~~~~~---~~--~g~g~~hiaf~V~Dl~~~~~~l~ 316 (360)
.++.|+.|.|.|++++.+||++ |||+.... .....+........ .. ..+++.|++|.|+|.+++.+.++
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-----lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~v~~~~~~~~~~~ 76 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-----FGLEVAARTDDELYYRGYGTDPFVYVARKGEKARFVGAAFEAASRADLEKAAA 76 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-----cCCEEEEecCCeEEEecCCCccEEEEcccCCcCcccEEEEEECCHHHHHHHHH
Confidence 3689999999999999999985 58764321 11223322111111 11 23578899999999999999999
Q ss_pred HcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 317 LSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 317 ~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
++|.++...+. .+.+ ++.++|+|||||.|||+-..
T Consensus 77 ~~g~~~~~~~~-~~~~-~~~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 77 LPGASVIDDLE-APGG-GKRVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred cCCCeeecCCC-CCCC-ceEEEEECCCCCEEEEEecc
Confidence 99998876543 3443 68899999999999997653
No 142
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.28 E-value=3e-11 Score=98.10 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=70.6
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCCCc---cEEEEEEeCC----------ccc----c-cCCCCeeEEEEEe-
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN---AVLELTYNHG----------VTE----Y-DKGNGYAQIAIGT- 305 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~---~~l~l~~~~~----------~~~----~-~~g~g~~hiaf~V- 305 (360)
++||.|.|+|+++|++||+ .|||+..... ...++....+ ... . +.+.+..|++|.+
T Consensus 1 ~~~i~l~V~D~~~a~~FY~-----~LGf~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYR-----RLGFDFPEEADDEPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHH-----HhCceecCCcCCCCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcC
Confidence 5799999999999999996 4677542110 1111211100 000 1 1223456888876
Q ss_pred --CCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEE
Q 018138 306 --DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 350 (360)
Q Consensus 306 --~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 350 (360)
+|+++++++++++|+++..+|...+.+ .+.++++|||||.|||+
T Consensus 76 ~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 76 TPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 489999999999999999888777764 58899999999999986
No 143
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.28 E-value=2.7e-11 Score=97.15 Aligned_cols=101 Identities=21% Similarity=0.205 Sum_probs=69.9
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCCccEEEEEEeCCcc---cc--cCCCCeeEEEE--EeCCHHHHHHHHH
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKNAVLELTYNHGVT---EY--DKGNGYAQIAI--GTDDVYKTAEAIK 316 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~~~l~l~~~~~~~---~~--~~g~g~~hiaf--~V~Dl~~~~~~l~ 316 (360)
+|+|+.|.|.|++++.+||+ .|||+.........+....... .. ....+..|++| .++|+++++++++
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 76 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-----AFGLDVREEGDGLELRTAGNDHRWARLLEGARKRLAYLSFGIFEDDFAAFARHLE 76 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-----HhCCcEEeecCceEEEecCCCceEEEeecCCCCceeeEEEEeEhhhHHHHHHHHH
Confidence 68999999999999999996 6888764332223332111110 01 12234555555 4589999999999
Q ss_pred HcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 317 LSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 317 ~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
++|+++..++. ... .+.+||+||+||.|||...
T Consensus 77 ~~Gi~~~~~~~-~~~--~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 77 AAGVALAAAPP-GAD--PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred HcCCceecCCC-cCC--CCEEEEECCCCCEEEEecC
Confidence 99999887652 222 4569999999999999854
No 144
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.27 E-value=5.4e-11 Score=98.29 Aligned_cols=105 Identities=21% Similarity=0.298 Sum_probs=74.8
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCCc---cEEEEEEe-CCcc--c------c---cCCCCeeEEEEEeCCH
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN---AVLELTYN-HGVT--E------Y---DKGNGYAQIAIGTDDV 308 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~---~~l~l~~~-~~~~--~------~---~~g~g~~hiaf~V~Dl 308 (360)
+++|+.|.|.|++++.+||++ +|||+..... ....+... .... . . ...+++.|++|.|+|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~~ 76 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRD----VLGFTVTDRGPLGGLVFLSRDPDEHHQIALITGRPAAPPPGPAGLNHIAFEVDSL 76 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHH----hcCCEEEeeccCCcEEEEEecCCCceEEEEEecCCCCCCCCCCCceEEEEEeCCH
Confidence 578999999999999999999 9998753211 12222211 0000 0 0 1224788999999875
Q ss_pred H---HHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCccc
Q 018138 309 Y---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 355 (360)
Q Consensus 309 ~---~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 355 (360)
+ ++++++.++|+++...+. .++ ++.+|++||+||.|||+...+.
T Consensus 77 ~~v~~~~~~l~~~G~~~~~~~~-~~~--~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 77 DDLRDLYERLRAAGITPVWPVD-HGN--AWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHCCCCccccCC-CCc--eeEEEEECCCCCEEEEEEcCCC
Confidence 5 688999999999877542 333 5789999999999999976543
No 145
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.27 E-value=2.8e-11 Score=98.75 Aligned_cols=100 Identities=23% Similarity=0.233 Sum_probs=70.0
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCC---C----------ccEEEEEEeCCcc-----cc--cCCCCeeEEEEE
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPED---K----------NAVLELTYNHGVT-----EY--DKGNGYAQIAIG 304 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~---~----------~~~l~l~~~~~~~-----~~--~~g~g~~hiaf~ 304 (360)
+.++.|.|+|+++|++||++ |||+... . ...+.+....... .. +.+.+..|++|.
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-----lGf~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~ 75 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-----LGFEFNPQFSDEKAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLS 75 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-----CCCEEccccCCCCeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEe
Confidence 35789999999999999974 5775321 0 0111121110000 00 122345699999
Q ss_pred eC---CHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 305 TD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 305 V~---Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
|+ |+++++++++++|+++..+|...++ ++.+||+|||||.|||+.
T Consensus 76 v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 76 ADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 97 5889999999999999988876665 577899999999999974
No 146
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.26 E-value=4.8e-11 Score=96.46 Aligned_cols=100 Identities=21% Similarity=0.173 Sum_probs=72.8
Q ss_pred ceeeecCHHHHHHHhhhcceEEeeeccCC-----Ccc--EEEEEEeCC------ccc-----ccCCCCeeEEEEEeCCHH
Q 018138 248 VMLRVGDLDRAINFYKKYTIAVMGYGPED-----KNA--VLELTYNHG------VTE-----YDKGNGYAQIAIGTDDVY 309 (360)
Q Consensus 248 v~L~V~D~e~a~~FY~~~~~~~lG~~~~~-----~~~--~l~l~~~~~------~~~-----~~~g~g~~hiaf~V~Dl~ 309 (360)
..|.|+|++++.+||++ +||+.... ... ...+..... ..+ ...+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~----~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKK----AFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHH----hhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 35889999999999999 99986421 111 111111100 000 012346789999999999
Q ss_pred HHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 310 KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 310 ~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
++++++.+.|+++..+|...+++ .+.++++||||+.|+|++.
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWG-DRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCccccccc-ceEEEEECCCCCEEEEecC
Confidence 99999999999999988766654 6899999999999999873
No 147
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=2.4e-11 Score=100.12 Aligned_cols=103 Identities=26% Similarity=0.318 Sum_probs=72.8
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCC---------------CccEEEEEEeCCccc-----ccC----CCCee
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPED---------------KNAVLELTYNHGVTE-----YDK----GNGYA 299 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~---------------~~~~l~l~~~~~~~~-----~~~----g~g~~ 299 (360)
++.++.|.+++..+...||.. +||++..+ ....+|++.++|... +.. ++|.+
T Consensus 42 r~~gm~l~~~~~fke~~Fsl~----fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfg 117 (170)
T KOG2944|consen 42 RVNGMALLVPDDFKEAKFSLY----FLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFG 117 (170)
T ss_pred hhccceeechhhhhHhhhHHH----hhcccccccCccCCCCCceEEecccCceeeecCCCCCCCcchhhcCCCCCCCccc
Confidence 445555566666666666655 77775332 134567778877643 211 34999
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeEeeCCcccCCCCc-EEEEEECCCCCeEEEEcCc
Q 018138 300 QIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINT-KITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 300 hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~-~~~~~~DPdG~~iel~~~~ 353 (360)
||||.|+|+++++++++++|+++...|. .|.. .++++.||||++||+....
T Consensus 118 HIci~V~di~sac~~lkekGV~f~Kk~~---dGk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 118 HICIEVDDINSACERLKEKGVRFKKKLK---DGKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred eEEEEeCCHHHHHHHHHHhCceeeecCC---CccccceeEEECCCCCeEEEeecC
Confidence 9999999999999999999999766543 3222 6799999999999998653
No 148
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.26 E-value=5.9e-11 Score=96.12 Aligned_cols=103 Identities=20% Similarity=0.266 Sum_probs=73.0
Q ss_pred eeceeeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEEEeCCccc-----c--cCCCCeeEEEEEeCC---HHHHHHH
Q 018138 246 CQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELTYNHGVTE-----Y--DKGNGYAQIAIGTDD---VYKTAEA 314 (360)
Q Consensus 246 ~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~~~~~~~~-----~--~~g~g~~hiaf~V~D---l~~~~~~ 314 (360)
.|+.|.|+|++++.+||++ +||++.... .....+........ . ...++..|++|.|+| +++++++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f~v~~~~dl~~~~~~ 78 (120)
T cd07254 3 FHVALNVDDLEASIAFYSK----LFGVEPTKVRDDYAKFLLEDPRLNFVLNERPGAPGGGLNHLGVQVDSAEEVAEAKAR 78 (120)
T ss_pred EEEEEEeCCHHHHHHHHHH----HhCCeEecccCCeeEEEecCCceEEEEecCCCCCCCCeeEEEEEeCCHHHHHHHHHH
Confidence 5899999999999999999 999975321 11111111111100 0 111478899999977 7899999
Q ss_pred HHHcCCeEeeCCcccC-CCCcEEEEEECCCCCeEEEEcC
Q 018138 315 IKLSGGKITREPGPLP-GINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 315 l~~~G~~i~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~ 352 (360)
++++|+++..+|.... +...+.+|++||+||.|||+..
T Consensus 79 l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 79 AEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 9999999887664432 2235789999999999999875
No 149
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.26 E-value=4.7e-11 Score=96.60 Aligned_cols=102 Identities=21% Similarity=0.229 Sum_probs=72.8
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCC--CccEEEEEEeCCc---------c-------cccCCCCeeEEEEEe-
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPED--KNAVLELTYNHGV---------T-------EYDKGNGYAQIAIGT- 305 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~--~~~~l~l~~~~~~---------~-------~~~~g~g~~hiaf~V- 305 (360)
+.+|.|.|.|++++.+||++ +|||+... ......+....+. . ......+..|++|.|
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~----~lG~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 76 (122)
T cd08354 1 ILETALYVDDLEAAEAFYED----VLGLELMLKEDRRLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAIP 76 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHh----ccCCEEeecCCCceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEcC
Confidence 46899999999999999999 99987532 1111222111100 0 001124678999998
Q ss_pred -CCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 306 -DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 306 -~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
+|++++++++.++|+++...+. ... .++.+|++||+|+.||+++.
T Consensus 77 ~~dl~~~~~~l~~~g~~~~~~~~-~~~-~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 77 AEELAEWEAHLEAKGVAIESEVQ-WPR-GGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred HHHHHHHHHHHHhcCCceecccc-CCC-CeeEEEEECCCCCEEEEecC
Confidence 5899999999999999876554 222 26889999999999999863
No 150
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.25 E-value=5.5e-11 Score=96.63 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=69.2
Q ss_pred eceeeecCHHHHHHHhhhcceEEeeeccCCC----------ccEEEEEEeCCc---ccc----cCCCCeeEEE--EEeCC
Q 018138 247 QVMLRVGDLDRAINFYKKYTIAVMGYGPEDK----------NAVLELTYNHGV---TEY----DKGNGYAQIA--IGTDD 307 (360)
Q Consensus 247 hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~----------~~~l~l~~~~~~---~~~----~~g~g~~hia--f~V~D 307 (360)
|+.|.|+|++++++||++ +||+..... ...+.+...... ... ....+..|++ |.++|
T Consensus 2 Hi~l~v~Dl~~s~~FY~~----~lG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~d 77 (125)
T cd08357 2 HLAIPVRDLEAARAFYGD----VLGCKEGRSSETWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEE 77 (125)
T ss_pred eEEEEeCCHHHHHHHHHH----hcCCEEeeccCCcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHH
Confidence 899999999999999999 999875321 111111111100 000 0112345665 45689
Q ss_pred HHHHHHHHHHcCCeEeeCCcccC---CCCcEEEEEECCCCCeEEEEc
Q 018138 308 VYKTAEAIKLSGGKITREPGPLP---GINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 308 l~~~~~~l~~~G~~i~~~p~~~~---~~~~~~~~~~DPdG~~iel~~ 351 (360)
+++++++|+++|+++..+|.... .+..+.+||+|||||.|||..
T Consensus 78 v~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 78 FDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred HHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 99999999999999998775432 122588999999999999974
No 151
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.20 E-value=1.6e-10 Score=102.02 Aligned_cols=100 Identities=25% Similarity=0.379 Sum_probs=75.1
Q ss_pred ceeEEEEEEeC--CHHHHHHHHHHhcCCEEEEEeeCCC--CCeEEEEEeeCCCCceEEEEEEecCCC--C-------CCc
Q 018138 113 RRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPE--DRYTNAFLGYGPEDSHFVVELTYNYGV--D-------KYD 179 (360)
Q Consensus 113 ~~l~HV~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~lel~~~~~~--~-------~~~ 179 (360)
.+|+||++.|+ |++++++||+++|||+.......++ .......+..+. ....+++.++... . ...
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHh
Confidence 57999999999 9999999999999999887654332 233344554332 3466777764331 1 012
Q ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCeEecCCee
Q 018138 180 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGP 214 (360)
Q Consensus 180 ~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~ 214 (360)
.|.|+.||||.|+|+++++++|+++|+++...|..
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~ 114 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIPDN 114 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCchh
Confidence 46799999999999999999999999999877643
No 152
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.18 E-value=1.7e-10 Score=90.33 Aligned_cols=98 Identities=29% Similarity=0.374 Sum_probs=71.5
Q ss_pred eceeeecCHHHHHHHhhhcceEEeeeccCCCc-----cEEEEEEeCCcc------cc---cCCCCeeEEEEEeCCHHHHH
Q 018138 247 QVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN-----AVLELTYNHGVT------EY---DKGNGYAQIAIGTDDVYKTA 312 (360)
Q Consensus 247 hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~-----~~l~l~~~~~~~------~~---~~g~g~~hiaf~V~Dl~~~~ 312 (360)
|+.+.|+|++++.+||++ +|||+..... ....+....... .. ..+.+..|++|.|+|+++++
T Consensus 1 Hi~i~~~d~~~~~~fy~~----~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 76 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEE----VLGFEVLFRNGNGGAEFAVLGLGGTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDAAY 76 (112)
T ss_pred CcceeeCCHHHHHHHHHh----ccCCEEEEeeccCCEEEEEEecCCceEEEecCCCCCCcccCCCeeEEEEECCCHHHHH
Confidence 789999999999999999 9998743222 111121110000 01 12457899999999999999
Q ss_pred HHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEE
Q 018138 313 EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 349 (360)
Q Consensus 313 ~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 349 (360)
++++++|+.+..++. ......+.++++||+|+.|+|
T Consensus 77 ~~l~~~g~~~~~~~~-~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 77 ERLKAAGVEVLGEPR-EEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHcCCcccCCCc-CCCCCcEEEEEECCCCcEEeC
Confidence 999999999888775 222337899999999999985
No 153
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.15 E-value=3.6e-10 Score=91.11 Aligned_cols=99 Identities=23% Similarity=0.291 Sum_probs=69.3
Q ss_pred ceeeecCHHHHHHHhhhcceEEeeeccCCC-c----------cEEEEEEeCCccc------ccCCCCeeEEEEEe---CC
Q 018138 248 VMLRVGDLDRAINFYKKYTIAVMGYGPEDK-N----------AVLELTYNHGVTE------YDKGNGYAQIAIGT---DD 307 (360)
Q Consensus 248 v~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~----------~~l~l~~~~~~~~------~~~g~g~~hiaf~V---~D 307 (360)
|.|.|+|++++.+||++ +|||+.... . ..+.+........ ...+.+..|++|.+ +|
T Consensus 2 i~l~v~d~~~a~~FY~~----~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 77 (121)
T cd07251 2 ITLGVADLARSRAFYEA----LLGWKPSADSNDGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEEE 77 (121)
T ss_pred eeEeeCCHHHHHHHHHH----hcCceecccCCCceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHHH
Confidence 67999999999999999 999986432 1 1111111100000 01112334566654 68
Q ss_pred HHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 308 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 308 l~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
++++++++++.|+++..++...+++ ++.++++||+||+||+..
T Consensus 78 ~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 78 VDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEee
Confidence 9999999999999999888766654 789999999999999975
No 154
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.14 E-value=3.1e-10 Score=91.35 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=65.6
Q ss_pred ceeeecCHHHHHHHhhhcceEEeeeccCCCc-cEEEEEEeCCcc-----cccCCCCeeEEEEEeCCHHHHHHHHHHcCCe
Q 018138 248 VMLRVGDLDRAINFYKKYTIAVMGYGPEDKN-AVLELTYNHGVT-----EYDKGNGYAQIAIGTDDVYKTAEAIKLSGGK 321 (360)
Q Consensus 248 v~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~-~~l~l~~~~~~~-----~~~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~ 321 (360)
..|.|+|++++++||++ |||+..... ....+....... ......+..+++|.|+|+++++++|+++|++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-----LGf~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~v~did~~~~~l~~~G~~ 79 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-----LGFELEWENDNLAYFRLGNCAFYLQDYYVKDWAENSMLHLEVDDLEAYYEHIKALGLP 79 (113)
T ss_pred eccccccHHHHHHHHHH-----hCCeeEecCCCEEEEEcCCEEEEeecCCCcccccCCEEEEEECCHHHHHHHHHHcCCc
Confidence 46889999999999974 587643221 122222111000 0011223458899999999999999999987
Q ss_pred Ee-----eCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 322 IT-----REPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 322 i~-----~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
+. .++...+++ .+.++|+|||||+|+|.+
T Consensus 80 ~~~~~~~~~~~~~~~g-~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 80 KKFPGVKLPPITQPWW-GREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred ccccceecCccccCCC-cEEEEEECCCccEEEeeC
Confidence 53 233333443 699999999999999874
No 155
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.12 E-value=4.4e-10 Score=91.18 Aligned_cols=100 Identities=21% Similarity=0.202 Sum_probs=66.8
Q ss_pred eceeeecCHHHHHHHhhhcceEEeeeccCCCc--cEEEEEEeCCcc------cccCCCCeeEEEEEeCCHHHHHHHHHHc
Q 018138 247 QVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN--AVLELTYNHGVT------EYDKGNGYAQIAIGTDDVYKTAEAIKLS 318 (360)
Q Consensus 247 hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~--~~l~l~~~~~~~------~~~~g~g~~hiaf~V~Dl~~~~~~l~~~ 318 (360)
...|.|+|+++|++||++ |||+..... .+..+....... .........|++|.|+|+++++++|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-----lG~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~v~dvd~~~~~l~~~ 79 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-----LGFSVGYRQAAGYMILRRGDLELHFFAHPDLDPATSPFGCCLRLPDVAALHAEFRAA 79 (120)
T ss_pred cceeEcCCHHHHHHHHHH-----cCCEEEecCCCCEEEEEcCCEEEEEEecCcCCCCCCcceEEEEeCCHHHHHHHHHHh
Confidence 356899999999999984 566532211 122221110000 1112223468999999999999999999
Q ss_pred CCeEe-------eCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 319 GGKIT-------REPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 319 G~~i~-------~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
|+++. .++...+++ .+.++|+|||||+|+|.+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 80 GLPETGSGIPRITPPEDQPWG-MREFALVDPDGNLLRFGQP 119 (120)
T ss_pred CccccccCCCcccCCcCCCCc-eeEEEEECCCCCEEEeecC
Confidence 99853 333333443 6899999999999999874
No 156
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.05 E-value=3.8e-09 Score=98.21 Aligned_cols=203 Identities=19% Similarity=0.284 Sum_probs=128.8
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCC--CC--CcCCCcceEE
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV--DK--YDIGTGFGHF 187 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~--~~--~~~g~g~~hi 187 (360)
..++.+|.+.|+|.+++..=|-..|||+...+--.. .+ ..| +-| + ..+-+...... .. ..+|++..-+
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk--~v-~l~-rQG--d--inlvvn~~~~s~a~~f~~~Hgps~~a~ 91 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK--AV-TLY-RQG--D--INLVVNAEPDSFAAEFLDKHGPSACAM 91 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHHHHhCcccccccccc--ce-eEE-EeC--C--EEEEEcCCCcchhhHHHHhcCCchhee
Confidence 678999999999994444444456999987542111 11 122 212 1 23333221111 01 1467888999
Q ss_pred EEEECCHHHHHHHHHHcCCeEecCCe---e--cC----CCCEEEEEEECCCC-CE---EEEeec--CC-----CCCCcee
Q 018138 188 GIAVEDVAKTVDLVKAKGGKVTREPG---P--VK----GGNTVIAFIEDPDG-YK---FELLER--GP-----TPEPLCQ 247 (360)
Q Consensus 188 ~f~V~Dld~~~~rL~~~G~~~~~~p~---~--~~----~g~~~~~~~~DPdG-~~---iEl~~~--~~-----~~~~i~h 247 (360)
+|.|+|...++++.++.|.+....+. + .+ -|+. .+|+.|..| .- .++... .. ....|+|
T Consensus 92 a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggs-llyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDH 170 (363)
T COG3185 92 AFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGS-LLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDH 170 (363)
T ss_pred EEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCc-EEEEeccCCCCcccccccccccccccccccCceeech
Confidence 99999999999999999995433222 1 11 1333 689988883 11 122222 11 1248999
Q ss_pred ceeee--cCHHHHHHHhhhcceEEeeeccCCC------------------ccEEEEEEeCCccc---------ccCCCCe
Q 018138 248 VMLRV--GDLDRAINFYKKYTIAVMGYGPEDK------------------NAVLELTYNHGVTE---------YDKGNGY 298 (360)
Q Consensus 248 v~L~V--~D~e~a~~FY~~~~~~~lG~~~~~~------------------~~~l~l~~~~~~~~---------~~~g~g~ 298 (360)
+++.| ..++....||++ +|+|+.... ...+.+..|....+ ...|.|+
T Consensus 171 l~~nv~~~~md~w~~FY~~----if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GI 246 (363)
T COG3185 171 LTHNVKAGQMDTWVLFYES----LFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGI 246 (363)
T ss_pred hhhhcchhhHHHHHHHHHH----HhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcc
Confidence 99877 679999999999 999975321 11122222211110 1247799
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeEeeCCc
Q 018138 299 AQIAIGTDDVYKTAEAIKLSGGKITREPG 327 (360)
Q Consensus 299 ~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~ 327 (360)
+||||.++|+.+++++++++|+++...|.
T Consensus 247 QHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 247 QHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred eEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 99999999999999999999999988774
No 157
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.99 E-value=6.7e-09 Score=81.06 Aligned_cols=117 Identities=28% Similarity=0.346 Sum_probs=77.2
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC--C--cCCCcceE--
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK--Y--DIGTGFGH-- 186 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~--~--~~g~g~~h-- 186 (360)
..+-|+++.|+|++++++||.++||++.-+..+ .|+.+.--++..++.+........ . .++....|
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfG 74 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFG 74 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccce
Confidence 457899999999999999999999998865432 222222223334455543221110 1 11222345
Q ss_pred EEEEECCHHHHHHHHHHcCCeEecCCeec-CC--CCEEEEEEECCCCCEEEEee
Q 018138 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPV-KG--GNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 187 i~f~V~Dld~~~~rL~~~G~~~~~~p~~~-~~--g~~~~~~~~DPdG~~iEl~~ 237 (360)
+.+.++|.-++.+||+++|+....+|.-. .+ |...-+++.||.||.+|+-.
T Consensus 75 vVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 75 VVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred EEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence 56677899999999999999977776542 21 33335889999999999854
No 158
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.97 E-value=3.6e-09 Score=102.33 Aligned_cols=102 Identities=21% Similarity=0.385 Sum_probs=74.3
Q ss_pred cccceeEEEEEEeC--CHHHHHHHHHHhcCCEEEEEeeCCCC--CeEEEEEeeCCCCceEEEEEEecCC---CC------
Q 018138 110 SDKRRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPED--RYTNAFLGYGPEDSHFVVELTYNYG---VD------ 176 (360)
Q Consensus 110 ~~~~~l~HV~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~lel~~~~~---~~------ 176 (360)
+.+.+|+||++.|+ |++++++||+++|||++..+.+.... ......+.. + .....|++.++.. ..
T Consensus 154 ~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~-~-~g~~~i~L~ep~~~~~~s~i~~fl 231 (353)
T TIGR01263 154 VGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS-P-DGKVKIPLNEPASGKDKSQIEEFL 231 (353)
T ss_pred CCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC-C-CCcEEEEEeccCCCCCCCHHHHHH
Confidence 45789999999999 99999999999999999876543221 221122221 1 2245677776421 11
Q ss_pred CCcCCCcceEEEEEECCHHHHHHHHHHcCCeEecCCe
Q 018138 177 KYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPG 213 (360)
Q Consensus 177 ~~~~g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~ 213 (360)
....|.|+.||||.|+|+++++++|+++|+++...|.
T Consensus 232 ~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~ 268 (353)
T TIGR01263 232 EFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPD 268 (353)
T ss_pred HHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCH
Confidence 1123789999999999999999999999999887763
No 159
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.94 E-value=2.3e-09 Score=86.51 Aligned_cols=122 Identities=26% Similarity=0.447 Sum_probs=74.5
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCC---eEEEEEeeCCCCceEEEEE--------EecCCCC-CCcC
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDR---YTNAFLGYGPEDSHFVVEL--------TYNYGVD-KYDI 180 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~---~~~~~l~~g~~~~~~~lel--------~~~~~~~-~~~~ 180 (360)
++++||.+.|+|++++++||+++||+++..+....... ....+.............. ....... ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 47899999999999999999999999998765432221 1112221110000000000 0000000 0001
Q ss_pred C-CcceEEEEEECC---HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEee
Q 018138 181 G-TGFGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (360)
Q Consensus 181 g-~g~~hi~f~V~D---ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~ 237 (360)
+ .+..|+++.+++ ..+....+...|..+...+. ..++. .+|++||||+.+|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~--~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGV--HVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcce--EEEEECCCCcEEEeeC
Confidence 1 247899999998 66777777788888765433 22232 6999999999999874
No 160
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=3.7e-09 Score=92.90 Aligned_cols=102 Identities=38% Similarity=0.743 Sum_probs=86.0
Q ss_pred CCCceeceeeecCHHHHHHHhhh---------------------------cceEEeeeccCCCccEEEEEEeCCcccccC
Q 018138 242 PEPLCQVMLRVGDLDRAINFYKK---------------------------YTIAVMGYGPEDKNAVLELTYNHGVTEYDK 294 (360)
Q Consensus 242 ~~~i~hv~L~V~D~e~a~~FY~~---------------------------~~~~~lG~~~~~~~~~l~l~~~~~~~~~~~ 294 (360)
..++-|+++.|.|.+++++||++ |+-+++||.+++....+||+||++...|.-
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 46888999999999999999993 445566677777788999999999999999
Q ss_pred CCCeeEEEEEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 295 GNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 295 g~g~~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
|+++.|+.+.++|+-..++.+...|++. ++.-++.+.||||+.|+|.+.
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v~~p~~~~---------~g~~~~~v~dPdGykF~l~~~ 143 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKVNAPGGKG---------SGCGIAFVKDPDGYKFYLIDR 143 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHhcCcCCcc---------cceEEEEEECCCCcEEEEecc
Confidence 9999999999999998888888766531 114578899999999999974
No 161
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.91 E-value=5.3e-08 Score=80.11 Aligned_cols=109 Identities=11% Similarity=0.134 Sum_probs=74.4
Q ss_pred EEe-CCHHHHHHHHHHhcCCEEEEEeeCC----------CCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEE
Q 018138 120 YRV-GDLDKTIKFYTECLGMKLLRKRDIP----------EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFG 188 (360)
Q Consensus 120 l~V-~Dle~a~~FY~~vLG~~~~~~~~~~----------~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~ 188 (360)
|.+ .|.+++++||+++||+++......+ .+.+..+.+..++. .+.+......... .+..-.+++
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~----~l~~~d~~~~~~~-~~~~~~~l~ 79 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQ----RLMASDGGPGFPF-TFGNGISLS 79 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCE----EEEEEcCCCCCCC-CCCCCEEEE
Confidence 667 8999999999999999998765321 12334555555432 3333332211111 122345789
Q ss_pred EEECC---HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEE
Q 018138 189 IAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (360)
Q Consensus 189 f~V~D---ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl 235 (360)
+.|+| +++++++|.+.| ++..+|...++|.+ ..+++||+|+.|+|
T Consensus 80 i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~-~~~v~Dp~G~~W~i 127 (128)
T cd06588 80 VECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPL-FGWVTDRFGVSWQI 127 (128)
T ss_pred EECCCHHHHHHHHHHHhcCC-eEeccchhcCcccc-cEEEECCCCCEEEe
Confidence 99886 778889976655 88888888888865 58999999999987
No 162
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.88 E-value=1.1e-07 Score=78.45 Aligned_cols=116 Identities=20% Similarity=0.213 Sum_probs=86.5
Q ss_pred EEeC-CHHHHHHHHHHhcCCEEEEEeeCCC----------CCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCC-cceEE
Q 018138 120 YRVG-DLDKTIKFYTECLGMKLLRKRDIPE----------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGT-GFGHF 187 (360)
Q Consensus 120 l~V~-Dle~a~~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~-g~~hi 187 (360)
|..+ |.+++++||+++||.++..+...++ +..-.+-|.++.. .|-+....+......+. .-.-|
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~----~im~sd~~~~~~~~~~~~~s~~l 81 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGS----TIMLSDAFPDMGATEGGGTSLSL 81 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCE----EEEEecCCCccCcccCCCeeEEE
Confidence 7788 9999999999999999998776666 4556666766632 23332221111112222 23457
Q ss_pred EEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 188 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 188 ~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
.+.++|++++++++.+.|+++..++....+|.+ +..++||.|+.|-|....+
T Consensus 82 ~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r-~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 82 DLYVEDVDAVFERAAAAGATVVMPLEDTFWGDR-YGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEehHHHHHHHHHHhcCCeEEecchhcCcccc-eEEEECCCCCEEEEecCcc
Confidence 788889999999999999999999999999976 5889999999999987654
No 163
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=98.85 E-value=7.4e-09 Score=82.75 Aligned_cols=77 Identities=27% Similarity=0.370 Sum_probs=58.3
Q ss_pred eeceeeecCHHHHHHHhhhcceEEeeeccCC------C------------ccEEEEEEeCCccc--ccCCCCeeEEEEEe
Q 018138 246 CQVMLRVGDLDRAINFYKKYTIAVMGYGPED------K------------NAVLELTYNHGVTE--YDKGNGYAQIAIGT 305 (360)
Q Consensus 246 ~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~------~------------~~~l~l~~~~~~~~--~~~g~g~~hiaf~V 305 (360)
+||.+.|+|+++|.+||++ +||+.... . ...+||........ ...+.|++|+||.|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~----~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v 76 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCD----VLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLDRGGGGIHHIAFEV 76 (109)
T ss_dssp EEEEEEES-HHHHHHHHHH----CTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHHHTSSEEEEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHH----hhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccccCCCCEEEEEEEe
Confidence 5999999999999999999 88875311 0 13455554333221 23678999999999
Q ss_pred CCHHHHHHHHHHcCCeEeeCC
Q 018138 306 DDVYKTAEAIKLSGGKITREP 326 (360)
Q Consensus 306 ~Dl~~~~~~l~~~G~~i~~~p 326 (360)
+|++++.++|+++|+++...+
T Consensus 77 ~D~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 77 DDLDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp SHHHHHHHHHHHTTECEEECE
T ss_pred CCHHHHHHHHHHCCCEEcccC
Confidence 999999999999999988765
No 164
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.83 E-value=5.6e-08 Score=84.52 Aligned_cols=145 Identities=22% Similarity=0.300 Sum_probs=84.2
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCC--C----C------CcCCC
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV--D----K------YDIGT 182 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~--~----~------~~~g~ 182 (360)
|+|+++.|+|++++.++|++.|||.+......+..+.....+.+++. .||+....+. . . ...+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~----YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG----YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS----EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc----eEEEEEeCCcccccccccceechhhcCCC
Confidence 68999999999999999988899999987766654555666666542 7888763211 0 0 01467
Q ss_pred cceEEEEEECCHHHHHHHHHHcCCeEecCCeecCCCC--EEEEEEECC----CCCEEEEeecCC-C---------CCCce
Q 018138 183 GFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGN--TVIAFIEDP----DGYKFELLERGP-T---------PEPLC 246 (360)
Q Consensus 183 g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~--~~~~~~~DP----dG~~iEl~~~~~-~---------~~~i~ 246 (360)
|+.++|+.++|+++..+++++.|+... .+...+++. ...+++.++ .+..-.+++... . ..+|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~-~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAG-SRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEE-EEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCC-CcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 899999999999999999999998621 111122221 124555554 244555553322 1 23799
Q ss_pred eceeeecCHHHHHHHhhh
Q 018138 247 QVMLRVGDLDRAINFYKK 264 (360)
Q Consensus 247 hv~L~V~D~e~a~~FY~~ 264 (360)
+|.+.+.|.+++.++|.+
T Consensus 156 ~v~i~~~d~~~~~~~~~~ 173 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYAR 173 (175)
T ss_dssp EEEEEETTHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHh
Confidence 999999999999999986
No 165
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.74 E-value=5.5e-08 Score=94.26 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=74.8
Q ss_pred ccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCC-----CeEEEEEeeCCCCceEEEEEEecCCC----C-----
Q 018138 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-----RYTNAFLGYGPEDSHFVVELTYNYGV----D----- 176 (360)
Q Consensus 111 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~-----~~~~~~l~~g~~~~~~~lel~~~~~~----~----- 176 (360)
.+.+|+||++.|++++++..||+++|||+..+..+.++. ..+...+..++ ....++|.++... +
T Consensus 177 gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v~ipLnEP~~~~~~~SqI~eF 254 (398)
T PLN02875 177 GLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMVLLPLNEPTFGTKRKSQIQTY 254 (398)
T ss_pred CcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcEEEEeccCCCCCCCcChHHHH
Confidence 467999999999999999999999999998865443221 23445554433 2456777765321 1
Q ss_pred -CCcCCCcceEEEEEECCHHHHHHHHHHc----CCeEecCC
Q 018138 177 -KYDIGTGFGHFGIAVEDVAKTVDLVKAK----GGKVTREP 212 (360)
Q Consensus 177 -~~~~g~g~~hi~f~V~Dld~~~~rL~~~----G~~~~~~p 212 (360)
....|.|++||||.|+|+.+++++|+++ |++++..|
T Consensus 255 L~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 255 LEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 1224689999999999999999999999 99988754
No 166
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.70 E-value=5.6e-08 Score=77.31 Aligned_cols=100 Identities=22% Similarity=0.247 Sum_probs=69.6
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC-------------ccEEEEEEeCC-------cccccCCCCeeEEEE
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-------------NAVLELTYNHG-------VTEYDKGNGYAQIAI 303 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-------------~~~l~l~~~~~-------~~~~~~g~g~~hiaf 303 (360)
++..|.|.|+|++++.+||+ -+||+.... ...+-|..... .........-..++|
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~-----alGfk~Npq~sde~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~l 77 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYT-----ALGFKFNPQFSDEDAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISL 77 (133)
T ss_pred eEEEEecchhhHHHHHHHHH-----HhCcccCCCcccccceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEe
Confidence 45688999999999999999 588875321 11111111100 001112334567888
Q ss_pred EeC---CHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEE
Q 018138 304 GTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 350 (360)
Q Consensus 304 ~V~---Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 350 (360)
.+. ++++.++++.++|++...++..+.. -+...|.|||||.||++
T Consensus 78 s~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l 125 (133)
T COG3607 78 SAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFL 125 (133)
T ss_pred ccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEE
Confidence 884 6899999999999999888876665 34567899999999986
No 167
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.64 E-value=6.3e-07 Score=71.36 Aligned_cols=117 Identities=25% Similarity=0.324 Sum_probs=73.4
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCC-------CCcCCCcceE
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD-------KYDIGTGFGH 186 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~-------~~~~g~g~~h 186 (360)
+.--|.|.|+|++++.+||+. |||+...+.. ++. ..+++- ++ .+.+-|.....-. .......-.-
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~s--de~-a~~mi~-~~---ni~vMLL~~~~fq~F~~~~i~dt~~s~evl 74 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFS--DED-AACMII-SD---NIFVMLLEEARFQTFTKRQIADTTKSREVL 74 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcc--ccc-ceeEEE-ec---cEEEEEeccHHhhhhcccccccccCCceEE
Confidence 345577999999999999986 9999875432 222 123322 22 1222232211100 0011112344
Q ss_pred EEEEEC---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 187 FGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 187 i~f~V~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
+++.+. ++|+++++.+++|+++..++... |..+..-|.|||||.||++.-.+
T Consensus 75 i~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~--gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 75 ISLSAGSREEVDELVDKALEAGGKPANEPQDE--GFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EEeccCcHHHHHHHHHHHHHcCCCCCCCcccc--ccccceeeeCCCCCeEEEEEeCH
Confidence 778775 49999999999999997766544 33334779999999999987543
No 168
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.60 E-value=2.3e-07 Score=83.75 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=78.4
Q ss_pred CCCCceeceeeecCHHHHHHHhhhcceEEeeeccCCCc-----------cEEEEEEeCCcc-cccCCCCeeEEEEEeC--
Q 018138 241 TPEPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKN-----------AVLELTYNHGVT-EYDKGNGYAQIAIGTD-- 306 (360)
Q Consensus 241 ~~~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~-----------~~l~l~~~~~~~-~~~~g~g~~hiaf~V~-- 306 (360)
.+..++.|.|.|+|++++..||++ ++|+.+.... ..+.|....... ..+...|+-|+||-++
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~----ilGL~v~~~~~~~v~L~vgg~~LL~L~q~~~a~~~~~~~aGLyH~AfLlP~r 82 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQE----ILGLQVLEETDGSVTLGVGGTPLLTLEQFPDARRPPPRAAGLYHTAFLLPTR 82 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHH----hhCCeeeeccCceEEEeeCCEEEEEEEeCCCCCCCCccccceeeeeeecCCH
Confidence 356788999999999999999999 9999864321 122222222221 1234579999999996
Q ss_pred -CHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 307 -DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 307 -Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
|+..+..++...|..+. +..+|.. .--+||.||+||-||+.-+
T Consensus 83 ~~L~~~l~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaD 126 (265)
T COG2514 83 EDLARVLNHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYAD 126 (265)
T ss_pred HHHHHHHHHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEec
Confidence 57788899999999876 5556665 5679999999999999876
No 169
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=98.51 E-value=2.7e-07 Score=81.45 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=59.8
Q ss_pred CCceeceeeec--CHHHHHHHhhhcceEEeeeccCCC--------------------ccEEEEEEeCC--cc-------c
Q 018138 243 EPLCQVMLRVG--DLDRAINFYKKYTIAVMGYGPEDK--------------------NAVLELTYNHG--VT-------E 291 (360)
Q Consensus 243 ~~i~hv~L~V~--D~e~a~~FY~~~~~~~lG~~~~~~--------------------~~~l~l~~~~~--~~-------~ 291 (360)
.+++||.+.|. |++++.+||++ +|||+.... ...+++..... .. .
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~----~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~ 77 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRK----VLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLE 77 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHH----hhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHH
Confidence 36899999999 99999999999 999864210 01112221111 00 1
Q ss_pred ccCCCCeeEEEEEeCCHHHHHHHHHHcCCeEeeCCc
Q 018138 292 YDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPG 327 (360)
Q Consensus 292 ~~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~ 327 (360)
.+.|.|++|+||.|+|+++++++|+++|+++...|.
T Consensus 78 ~~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 78 YYGGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred HhCCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 124689999999999999999999999999998774
No 170
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.44 E-value=1.3e-05 Score=63.60 Aligned_cols=113 Identities=26% Similarity=0.360 Sum_probs=62.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECCHHH
Q 018138 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAK 196 (360)
Q Consensus 117 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Dld~ 196 (360)
+-+|+|.|-+..++||+++|||++..... ..++++.......+.||-.+............++++.+.|++..+
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~E 76 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKE 76 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHH
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHH
Confidence 45799999999999999999999987643 246776544444555555443332233334478999999998665
Q ss_pred HHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecC
Q 018138 197 TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (360)
Q Consensus 197 ~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~ 239 (360)
.+.|.++|.++.. -+.+...+.+-..+|+|..|.|....
T Consensus 77 -Ie~LLar~~~~~~---l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 77 -IEALLARGAQYDR---LYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp -HHHHHHC-S--SE---EEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred -HHHHHhcccccce---eEEcCCceEEEEECCCCCEEEEEEcC
Confidence 4455566655332 12222223466689999999988654
No 171
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.42 E-value=2e-06 Score=80.97 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=71.5
Q ss_pred ceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEEC
Q 018138 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (360)
Q Consensus 113 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 192 (360)
-+.-||+|.|+|++++++||+++||+.. . .++. ++ ..+ ..-+.+-+.+. +. ....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-F----sde~---a~-cm~--dtI~vMllt~~-D~----~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-W----DGDK---LF-LLG--KTSLYLQQTKA-EK----KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-C----CCCc---cc-ccc--CcEEEEEecCC-CC----CCcceEEEEeccC
Confidence 5667999999999999999999988874 2 2222 11 112 22233333333 11 1223345788887
Q ss_pred C---HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 193 D---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 193 D---ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
+ +|++++++.++|++...+|.++.. .--|.||||+.||++..
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEEE
Confidence 4 999999999999987666665544 24589999999999864
No 172
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.35 E-value=3.4e-06 Score=66.09 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=72.1
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCC-ccEEEEEEeCCcc-----c----cc----CCCC--eeE--EEEEe
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-NAVLELTYNHGVT-----E----YD----KGNG--YAQ--IAIGT 305 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-~~~l~l~~~~~~~-----~----~~----~g~g--~~h--iaf~V 305 (360)
.+-|..+.|+|++++++||.+ +||.+.... +.++.+..-.... . .. .+.+ ..| +.|.+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYge----vlG~~~GRstd~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl~~ 79 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGE----VLGCKEGRSTDTWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVLPV 79 (138)
T ss_pred cceEEeeeccccHHHHhhhhh----hcccccccccceEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEEEEH
Confidence 356899999999999999999 999876532 4455554321110 0 00 1111 223 44566
Q ss_pred CCHHHHHHHHHHcCCeEeeCCccc---CCCCcEEEEEECCCCCeEEEEcC
Q 018138 306 DDVYKTAEAIKLSGGKITREPGPL---PGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 306 ~Dl~~~~~~l~~~G~~i~~~p~~~---~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
+|--+..++|+++|+....+|.-. ..+-.+..+++||.||.+|+-.-
T Consensus 80 edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 80 EDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred HHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 888899999999999988777421 11236889999999999998653
No 173
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.32 E-value=3.3e-06 Score=69.37 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=63.6
Q ss_pred eeee-cCHHHHHHHhhhcceEEeeeccCCC---------------c--cEEEEEEeCCc-------cccc-CCCCeeEEE
Q 018138 249 MLRV-GDLDRAINFYKKYTIAVMGYGPEDK---------------N--AVLELTYNHGV-------TEYD-KGNGYAQIA 302 (360)
Q Consensus 249 ~L~V-~D~e~a~~FY~~~~~~~lG~~~~~~---------------~--~~l~l~~~~~~-------~~~~-~g~g~~hia 302 (360)
.|.+ .|.++|++||++ +||.+.... + ...++...... .... .+....+++
T Consensus 4 ~L~~~~~~~eAi~FY~~----~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~~~~~~~~l~ 79 (128)
T cd06588 4 YLWFNGNAEEALEFYQS----VFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPFTFGNGISLS 79 (128)
T ss_pred EEeeCCCHHHHHHHHHH----HhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCCCCCCCEEEE
Confidence 4566 999999999998 888653210 0 12222211100 0011 122345788
Q ss_pred EEeCC---HHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEE
Q 018138 303 IGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 350 (360)
Q Consensus 303 f~V~D---l~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 350 (360)
+.|+| +++++++|.+.| ++..++...+++ .+..+++||+|+.|+|.
T Consensus 80 i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 80 VECDSEEEADRLFEALSEGG-TVLMPLQKTFWS-PLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EECCCHHHHHHHHHHHhcCC-eEeccchhcCcc-cccEEEECCCCCEEEeC
Confidence 88876 778889987655 888888887775 68999999999999873
No 174
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.32 E-value=5.4e-07 Score=72.43 Aligned_cols=101 Identities=24% Similarity=0.267 Sum_probs=68.1
Q ss_pred CceeceeeecCHHHHHHHhhhcceEEeeeccCCCcc--------EEEEEEeCC--------c--------cc--------
Q 018138 244 PLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKNA--------VLELTYNHG--------V--------TE-------- 291 (360)
Q Consensus 244 ~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~~--------~l~l~~~~~--------~--------~~-------- 291 (360)
++.||.|.|+|++++++||++ +||+....... ...+..... . ..
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~----~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTD----VLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALG 77 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHh----hcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEe
Confidence 578999999999999999999 99987532110 111110000 0 00
Q ss_pred ccCC-CCeeEEEEEeCC---HHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 292 YDKG-NGYAQIAIGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 292 ~~~g-~g~~hiaf~V~D---l~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
...+ .+..|+++.+++ ...........|..+...+. ... +..+|++||||+.||+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 78 VPGGDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred ecCchhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 0011 246899999988 66777778888888766554 323 338999999999999974
No 175
>PRK10148 hypothetical protein; Provisional
Probab=98.20 E-value=0.00015 Score=61.21 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=77.3
Q ss_pred EEEeC-CHHHHHHHHHHhcCCEEEEEee---C-----------------CCCCeEEEEEeeCCCCceEEEEEEecCCCCC
Q 018138 119 VYRVG-DLDKTIKFYTECLGMKLLRKRD---I-----------------PEDRYTNAFLGYGPEDSHFVVELTYNYGVDK 177 (360)
Q Consensus 119 ~l~V~-Dle~a~~FY~~vLG~~~~~~~~---~-----------------~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~ 177 (360)
-|... |.+++.+||+++||.++..... . +++.+..+-|.+++. .|-+..... ..
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~----~lm~sD~~~-~~ 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS----DIMMSDAIP-SG 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE----EEEEECCCC-Cc
Confidence 35664 8999999999999998865431 1 123445566666532 233322111 11
Q ss_pred CcCCCcceEEEEEECCHHH---HHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCCCC
Q 018138 178 YDIGTGFGHFGIAVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 242 (360)
Q Consensus 178 ~~~g~g~~hi~f~V~Dld~---~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~ 242 (360)
...+ .-.++++.++|.++ ++++| +.|+++..++....+|.+ +..++||-|+.|.|...+..|
T Consensus 81 ~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~-~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 81 KAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHG-FGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred CCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhc-cEEEECCCCCEEEEEecCCCC
Confidence 1112 23467888888776 45555 699999999998888865 689999999999998776544
No 176
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.14 E-value=1.4e-05 Score=75.32 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=69.3
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCCccE-EEEEEe---C-CcccccCCCCeeEEEEEeC---CHHHHHHH
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKNAV-LELTYN---H-GVTEYDKGNGYAQIAIGTD---DVYKTAEA 314 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~~~-l~l~~~---~-~~~~~~~g~g~~hiaf~V~---Dl~~~~~~ 314 (360)
.+..||.|.|+|+++|++||++ +|++.. -.+.. .-+..+ . -..+......-.-+++.++ ++|+.+++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~----LF~~n~-Fsde~a~cm~dtI~vMllt~~D~~~~~evLl~Ls~~Sre~VD~lv~~ 320 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSK----MFGLEC-WDGDKLFLLGKTSLYLQQTKAEKKNRGTTTLSLELECEHDFVRFLRR 320 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHH----HhCCCC-CCCCccccccCcEEEEEecCCCCCCcceEEEEeccCCHHHHHHHHHH
Confidence 5778999999999999999999 777753 11111 111000 0 0000112334567888886 58899999
Q ss_pred HHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEc
Q 018138 315 IKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 351 (360)
Q Consensus 315 l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 351 (360)
+.++|++...++.+++. .--|.|||||.||++=
T Consensus 321 A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 321 WEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSC 353 (357)
T ss_pred HHHcCCCCCCCcccccC----cceeECCCCCEEEEEE
Confidence 99999988777777666 3468999999999973
No 177
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=5.8e-05 Score=62.41 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=70.9
Q ss_pred eeec-CHHHHHHHhhhcceEEeeeccC------C-----------CccEEEEEEeCCc---------ccccCCC-CeeEE
Q 018138 250 LRVG-DLDRAINFYKKYTIAVMGYGPE------D-----------KNAVLELTYNHGV---------TEYDKGN-GYAQI 301 (360)
Q Consensus 250 L~V~-D~e~a~~FY~~~~~~~lG~~~~------~-----------~~~~l~l~~~~~~---------~~~~~g~-g~~hi 301 (360)
|.++ |.++|++||++ +||.+.. + .-...+|...... .....++ .-.-+
T Consensus 6 l~f~gn~~~Al~fY~~----vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~~~~~~~~s~~l 81 (136)
T COG2764 6 LFFNGNAREALAFYKE----VFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMGATEGGGTSLSL 81 (136)
T ss_pred EEECCCHHHHHHHHHH----HhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccCcccCCCeeEEE
Confidence 5677 99999999999 8887531 1 1112223221110 0111222 23567
Q ss_pred EEEeCCHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 302 AIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 302 af~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
.+.++|+++.++++.+.|+++..++.+..++ .++..++||.|+.|-|....
T Consensus 82 ~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 82 DLYVEDVDAVFERAAAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEehHHHHHHHHHHhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCc
Confidence 7788899999999999999999999988887 79999999999999997754
No 178
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.05 E-value=1.1e-05 Score=75.49 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=72.4
Q ss_pred ccceeEEEEEEeC--CHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEe-eCCCCceEEEEEEecCCCCC-------CcC
Q 018138 111 DKRRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLG-YGPEDSHFVVELTYNYGVDK-------YDI 180 (360)
Q Consensus 111 ~~~~l~HV~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~-~g~~~~~~~lel~~~~~~~~-------~~~ 180 (360)
.+..|+|++.+|+ .++.+..||+++|||+.....+.++.. +.++-+ +-.......|.|..+..... .-.
T Consensus 164 g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~-tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~ 242 (363)
T COG3185 164 GLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPI-TGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYR 242 (363)
T ss_pred CceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCc-ccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhC
Confidence 4579999999986 899999999999999998766654432 111111 11111234555544332211 125
Q ss_pred CCcceEEEEEECCHHHHHHHHHHcCCeEecCCee
Q 018138 181 GTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGP 214 (360)
Q Consensus 181 g~g~~hi~f~V~Dld~~~~rL~~~G~~~~~~p~~ 214 (360)
|.|+.||+|.++|+-+++++|+++|++++..|..
T Consensus 243 G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~t 276 (363)
T COG3185 243 GEGIQHIAFGTDDIYATVAALRERGVKFLPIPET 276 (363)
T ss_pred CCcceEEEecccHHHHHHHHHHHcCCccCCCchh
Confidence 7899999999999999999999999998877654
No 179
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.79 E-value=8.3e-05 Score=68.48 Aligned_cols=110 Identities=16% Similarity=0.263 Sum_probs=79.3
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCC-----------------c-cEEEEE--EeCCcc-----cccCCCC
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK-----------------N-AVLELT--YNHGVT-----EYDKGNG 297 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~-----------------~-~~l~l~--~~~~~~-----~~~~g~g 297 (360)
.+++||.++|.|...+..||.. .|||++-.. + ...-+. ++.+.. -..+|.+
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~----~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdg 91 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCS----GFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDG 91 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHh----hcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccc
Confidence 4799999999999999999998 899875321 1 111111 122111 1245778
Q ss_pred eeEEEEEeCCHHHHHHHHHHcCCeEeeCCcccCCCC--cEEEEEECCCCCeEEEEcCcccc
Q 018138 298 YAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGIN--TKITACLDPDGWKSVFVDNLDFL 356 (360)
Q Consensus 298 ~~hiaf~V~Dl~~~~~~l~~~G~~i~~~p~~~~~~~--~~~~~~~DPdG~~iel~~~~~~~ 356 (360)
.--+||+|+|++++.+.+.++|+++.++|.+..... -+++.+..+.-....+++..++.
T Consensus 92 vkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~ 152 (381)
T KOG0638|consen 92 VKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYK 152 (381)
T ss_pred hhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccc
Confidence 889999999999999999999999999998766543 36777777776666666655443
No 180
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.75 E-value=0.00026 Score=58.87 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=77.5
Q ss_pred cccceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCCC----CcCCCcce
Q 018138 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK----YDIGTGFG 185 (360)
Q Consensus 110 ~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~----~~~g~g~~ 185 (360)
..+.++.||.+.++|.+++..+++ .|||+.+.+-. ... ...++-| . ..+-+...+.... ..+|+++.
T Consensus 5 ~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hr--sk~--v~l~rQG--~--I~~vln~ep~s~a~~~~~~HG~sv~ 75 (139)
T PF14696_consen 5 LGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHR--SKD--VTLYRQG--D--INFVLNSEPDSFAAEFAAQHGPSVC 75 (139)
T ss_dssp T-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCEC--CCS--EEEEEET--T--EEEEEEEESTSCHHHHHHHHSSEEE
T ss_pred CCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecC--Ccc--eEEEEeC--C--EEEEEeCCCcchHHHHHHhcCCEEE
Confidence 356799999999999988888886 59999986532 222 2333333 2 2333333222111 13588999
Q ss_pred EEEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCCC
Q 018138 186 HFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (360)
Q Consensus 186 hi~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~~ 241 (360)
-++|+|+|.+++++++.+.|.+...+|.. .+...+.-++.+.|.++.|+++...
T Consensus 76 aiafrV~Da~~A~~rA~~~GA~~~~~~~~--~~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 76 AIAFRVDDAAAAYERAVALGAEPVQEPTG--PGELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEEEES-HHHHHHHHHHTT--EEEEEEE--TT-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEEEeCCHHHHHHHHHHcCCcCcccCCC--CCcEeeeeEEccCCCEEEEEecCCC
Confidence 99999999999999999999998766533 2334467789999999999987653
No 181
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=96.95 E-value=0.0022 Score=53.31 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCceeceeeecCHHHHHHHhhhcceEEeeeccCCC--ccEEEE--------EEeCCccc------ccCCCCeeEEEEEeC
Q 018138 243 EPLCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK--NAVLEL--------TYNHGVTE------YDKGNGYAQIAIGTD 306 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~--~~~l~l--------~~~~~~~~------~~~g~g~~hiaf~V~ 306 (360)
.++++|.+.+.|.++...+++ -|||..... ...+.+ ..|..+.. ..+|++..-++|.|+
T Consensus 8 ~G~dFvEFa~~~~~~l~~~~~-----~lGF~~~a~hrsk~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~aiafrV~ 82 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALAQLFT-----ALGFQPVARHRSKDVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAIAFRVD 82 (139)
T ss_dssp EEEEEEEEE-SSTTSCHHHHC-----CCCEEEECCECCCSEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEEEEEES
T ss_pred CCeEEEEEecCCHHHHHHHHH-----HhCcceEEecCCcceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEEEEEeC
Confidence 468899999999888888886 688864211 111121 11211111 135889999999999
Q ss_pred CHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 307 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 307 Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
|..++++++.++|.+...+|..... -.+..++-+.|.++.|+++.
T Consensus 83 Da~~A~~rA~~~GA~~~~~~~~~~e--~~~paI~g~G~sl~yfVdr~ 127 (139)
T PF14696_consen 83 DAAAAYERAVALGAEPVQEPTGPGE--LNIPAIRGIGGSLHYFVDRY 127 (139)
T ss_dssp -HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--
T ss_pred CHHHHHHHHHHcCCcCcccCCCCCc--EeeeeEEccCCCEEEEEecC
Confidence 9999999999999998887643222 57788999999999999874
No 182
>PRK10148 hypothetical protein; Provisional
Probab=96.94 E-value=0.013 Score=49.44 Aligned_cols=53 Identities=15% Similarity=-0.019 Sum_probs=43.0
Q ss_pred eeEEEEEeCCHHH---HHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcC
Q 018138 298 YAQIAIGTDDVYK---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 352 (360)
Q Consensus 298 ~~hiaf~V~Dl~~---~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 352 (360)
-.++++.++|.++ ++++| +.|+++..++.+.+++ .++..++||.|+.|.|...
T Consensus 86 ~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg-~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 86 GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWA-HGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchh-hccEEEECCCCCEEEEEec
Confidence 3567777788765 56666 5899999999888875 6889999999999999765
No 183
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.08 E-value=0.27 Score=39.57 Aligned_cols=96 Identities=19% Similarity=0.373 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHhcCC-EEEEEeeCCC------CCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEECC--
Q 018138 123 GDLDKTIKFYTECLGM-KLLRKRDIPE------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED-- 193 (360)
Q Consensus 123 ~Dle~a~~FY~~vLG~-~~~~~~~~~~------~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D-- 193 (360)
.+.++|.+||+++||- ++......++ +....+.+..+.. .+-..... +....+++ ..+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~----~lm~~D~~--~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQ----KLMASDGG--PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTE----EEEEEEES--TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCe----EEEEECCC--CCCCCCCc-EEEEEEcCCHH
Confidence 6899999999999994 3333333322 2344455555421 22222222 22233333 578888887
Q ss_pred -HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEe
Q 018138 194 -VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (360)
Q Consensus 194 -ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~ 236 (360)
+++++++|.+-|- +.. .+..++|.-|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~----------~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TCC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------ccc-eeEEEEeCCCCEEEeC
Confidence 5666788766664 222 3688999999999875
No 184
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=96.06 E-value=0.0088 Score=51.74 Aligned_cols=73 Identities=25% Similarity=0.366 Sum_probs=42.3
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCCC----------------ccEEEEEEeCCccc------------ccCCC
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDK----------------NAVLELTYNHGVTE------------YDKGN 296 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~----------------~~~l~l~~~~~~~~------------~~~g~ 296 (360)
|+|+.+.|+|++++.++|++ .+|+..... +..+|+........ ...+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~----~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQ----RLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGG----S--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhh----cceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCC
Confidence 68999999999999999965 777764211 23566644211110 12467
Q ss_pred CeeEEEEEeCCHHHHHHHHHHcCCe
Q 018138 297 GYAQIAIGTDDVYKTAEAIKLSGGK 321 (360)
Q Consensus 297 g~~hiaf~V~Dl~~~~~~l~~~G~~ 321 (360)
|+..+++.++|+++..+++++.|++
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCC
Confidence 8999999999999999999999986
No 185
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.70 E-value=0.031 Score=43.53 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=45.8
Q ss_pred ceeceeeecCHHHHHHHhhhcceEEeeeccCCCccEEEEEEeCCccc-cc--CCCCeeEEEEEeC---CHHHHHHHHHHc
Q 018138 245 LCQVMLRVGDLDRAINFYKKYTIAVMGYGPEDKNAVLELTYNHGVTE-YD--KGNGYAQIAIGTD---DVYKTAEAIKLS 318 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~~~~~l~l~~~~~~~~-~~--~g~g~~hiaf~V~---Dl~~~~~~l~~~ 318 (360)
+..+.|+|.| +++..||++ +|+-+.. ..+.+....|+.= .+ ..-++-.+-|.|+ |+.+..+++.+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~----~f~~~~~---~~l~f~ea~G~DL~~~~~~twDLe~Lkf~V~~~~Dl~~L~~~le~- 76 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQS----IFGGQLP---FFLTFQEAQGPDLTIENNETWDLEMLKFQVPKDFDLAALKSHLEE- 76 (101)
T ss_dssp E-EEEEEE-T--T---S--H-------HHHT---TTEEEEE---CCGSS-TTSBSSEEEEEEEES-S--HHHHHHHTTT-
T ss_pred EEEEEEeCCC-hhHHHHHHh----ccccCCC---ceEEEeeccCCccccCCCcEEeeEEEEEEecCcccHHHHHHHhcc-
Confidence 4568899999 889999999 8873322 3455555444321 11 1236778888997 56678888876
Q ss_pred CCeEeeCCcccCCCCcEEEEEECCCCCeEEE
Q 018138 319 GGKITREPGPLPGINTKITACLDPDGWKSVF 349 (360)
Q Consensus 319 G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 349 (360)
..+..+.. .+++.+.||+|..+.+
T Consensus 77 -~~~fidKk------~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 77 -QEFFIDKK------EKFLVTSDPSQIELWF 100 (101)
T ss_dssp -S-EE--TT-------SEEEEE-TTS-EEEE
T ss_pred -cceEecCC------ceEEEEECCcceEEEe
Confidence 34444332 6889999999999886
No 186
>PF15067 FAM124: FAM124 family
Probab=95.37 E-value=0.13 Score=46.01 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=61.0
Q ss_pred eeEEEEEEeC--CHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEec---CCCCCCcCCCcceEEE
Q 018138 114 RMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYN---YGVDKYDIGTGFGHFG 188 (360)
Q Consensus 114 ~l~HV~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~---~~~~~~~~g~g~~hi~ 188 (360)
-+--+.|.|+ |.+.+++||+-+|+-+...+.. ++ -+|.-+... .+.|.+.-+ .+..+. ...-.-+.
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~F-C~F~lys~~--~~~iQlsLK~lp~~~~p~--p~esavLq 198 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----DF-CFFTLYSQP--GLDIQLSLKQLPPGMSPE--PTESAVLQ 198 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----Cc-EEEEEecCC--CeEEEEEeccCCCCCCcc--cccceEEE
Confidence 4667889998 9999999999999998865533 12 123333332 344444332 121111 11224589
Q ss_pred EEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEE
Q 018138 189 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (360)
Q Consensus 189 f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl 235 (360)
|.|.|+.+++-.|=.--.. ...+. ...+|||||.|=|
T Consensus 199 F~V~~igqLvpLLPnpc~P-------IS~~r---WqT~D~DGNkILL 235 (236)
T PF15067_consen 199 FRVEDIGQLVPLLPNPCSP-------ISETR---WQTEDYDGNKILL 235 (236)
T ss_pred EEecchhhhcccCCCCccc-------ccCCc---ceeeCCCCCEecc
Confidence 9999998876654221111 11222 4689999998843
No 187
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=95.02 E-value=0.37 Score=38.67 Aligned_cols=100 Identities=22% Similarity=0.300 Sum_probs=51.9
Q ss_pred eceeeecCHHHHHHHhhhcceEEeeeccCC------------CccEEEEEEeCCcc--cccCCCCeeEEEEEeCCHHHHH
Q 018138 247 QVMLRVGDLDRAINFYKKYTIAVMGYGPED------------KNAVLELTYNHGVT--EYDKGNGYAQIAIGTDDVYKTA 312 (360)
Q Consensus 247 hv~L~V~D~e~a~~FY~~~~~~~lG~~~~~------------~~~~l~l~~~~~~~--~~~~g~g~~hiaf~V~Dl~~~~ 312 (360)
+-+|+|+|-+..++||++ .|||+.-. ....+.+..+++.. ......-+.++.+.|.+..++-
T Consensus 3 ~PvlRVnnR~~ni~FY~~----~LGfkll~EEna~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EIe 78 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQK----TLGFKLLSEENALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEIE 78 (125)
T ss_dssp EEEEEESSHHHHHHHHTT----TT--EEEEEETTEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHHH
T ss_pred CceEEEcCHHHhHHHHHh----ccCcEEeeccccEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHHHH
Confidence 346899999999999999 88887311 11222233333222 1222246889999998865543
Q ss_pred HHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcc
Q 018138 313 EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 354 (360)
Q Consensus 313 ~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 354 (360)
.|.++|.++..- .-+-+++-+-..+|.|..|.+....|
T Consensus 79 -~LLar~~~~~~l---~kg~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 79 -ALLARGAQYDRL---YKGKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp -HHHHC-S--SEE---EE-SSSEEEEEE-TT--EEEEE--S-
T ss_pred -HHHhccccccee---EEcCCceEEEEECCCCCEEEEEEcCC
Confidence 344455553221 12233666778899999999977654
No 188
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=91.21 E-value=0.43 Score=37.26 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=39.5
Q ss_pred eeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCCceEEEEEEecCCCC---CCcCCCcceEEEEE
Q 018138 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD---KYDIGTGFGHFGIA 190 (360)
Q Consensus 114 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~---~~~~g~g~~hi~f~ 190 (360)
.+..|.|+|+| +++++||+++||-.+. . .+.+.+..++. .....-++..+-|.
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~--------------~l~f~ea~G~DL~~~~~~twDLe~Lkf~ 60 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQLP---------F--------------FLTFQEAQGPDLTIENNETWDLEMLKFQ 60 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHHT---------T--------------TEEEEE---CCGSS-TTSBSSEEEEEEE
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCCC---------c--------------eEEEeeccCCccccCCCcEEeeEEEEEE
Confidence 35678899999 8899999998862221 0 12222211110 00112256778889
Q ss_pred EC---CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEE
Q 018138 191 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 233 (360)
Q Consensus 191 V~---Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~i 233 (360)
|+ |+.++.+++.+.+. +-+....++.+.||.+..+
T Consensus 61 V~~~~Dl~~L~~~le~~~~--------fidKk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 61 VPKDFDLAALKSHLEEQEF--------FIDKKEKFLVTSDPSQIEL 98 (101)
T ss_dssp ES-S--HHHHHHHTTTS-E--------E--TT-SEEEEE-TTS-EE
T ss_pred ecCcccHHHHHHHhcccce--------EecCCceEEEEECCcceEE
Confidence 98 68888888877332 2223334688899998544
No 189
>PF15067 FAM124: FAM124 family
Probab=85.93 E-value=4.3 Score=36.53 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=55.8
Q ss_pred CCceeceeeec--CHHHHHHHhhhcceEEeeeccCCC-------------ccEEEEEEeCCcccc-cCCCCeeEEEEEeC
Q 018138 243 EPLCQVMLRVG--DLDRAINFYKKYTIAVMGYGPEDK-------------NAVLELTYNHGVTEY-DKGNGYAQIAIGTD 306 (360)
Q Consensus 243 ~~i~hv~L~V~--D~e~a~~FY~~~~~~~lG~~~~~~-------------~~~l~l~~~~~~~~~-~~g~g~~hiaf~V~ 306 (360)
..+..++|.|+ |.+.+++||+- +++-+.... +..+.+....-+... +....-..+.|.|+
T Consensus 127 ~EilRftly~~~~N~~d~vr~Yel----il~~~~~~~k~~FC~F~lys~~~~~iQlsLK~lp~~~~p~p~esavLqF~V~ 202 (236)
T PF15067_consen 127 KEILRFTLYCSFDNYEDMVRFYEL----ILQREPTQQKEDFCFFTLYSQPGLDIQLSLKQLPPGMSPEPTESAVLQFRVE 202 (236)
T ss_pred ccEEEEEEEecCCCHHHHHHHHHH----HhccCcceeeCCcEEEEEecCCCeEEEEEeccCCCCCCcccccceEEEEEec
Confidence 46778889998 99999999996 666543221 122222221100011 11123467999999
Q ss_pred CHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEE
Q 018138 307 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 349 (360)
Q Consensus 307 Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 349 (360)
|+-+++-.|-.--.+ ...++ ..-.|||||.|-|
T Consensus 203 ~igqLvpLLPnpc~P---------IS~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 203 DIGQLVPLLPNPCSP---------ISETR-WQTEDYDGNKILL 235 (236)
T ss_pred chhhhcccCCCCccc---------ccCCc-ceeeCCCCCEecc
Confidence 999887766433222 22122 5679999999854
No 190
>PRK11700 hypothetical protein; Provisional
Probab=74.30 E-value=55 Score=28.58 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=44.6
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCC-----CceEEEEEEecCCCCCCcCCCcceE
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPE-----DSHFVVELTYNYGVDKYDIGTGFGH 186 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-----~~~~~lel~~~~~~~~~~~g~g~~h 186 (360)
...++||.++|.+.+.+.+|-+..+-.--.-.. ..-.+...+-+..... ..--++||..+.. +.-+..|+-|
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~llSe-n~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~--k~Yp~eGWEH 113 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELLSE-NIINGRPICLFELDQPLQVGHWSIDCVELPYPGE--KRYPHEGWEH 113 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhhhc-cccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceE
Confidence 356899999999999999999886643222111 1111222333333211 1122456654322 2234568999
Q ss_pred EEEEECC
Q 018138 187 FGIAVED 193 (360)
Q Consensus 187 i~f~V~D 193 (360)
|-+.++.
T Consensus 114 IElVlp~ 120 (187)
T PRK11700 114 IELVLPG 120 (187)
T ss_pred EEEEecC
Confidence 9998873
No 191
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=69.08 E-value=59 Score=26.20 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.0
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeEee
Q 018138 299 AQIAIGTDDVYKTAEAIKLSGGKITR 324 (360)
Q Consensus 299 ~hiaf~V~Dl~~~~~~l~~~G~~i~~ 324 (360)
..+-++|+|+|++.+.|+++|+++..
T Consensus 110 Alli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 110 ALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 46778899999999999999999764
No 192
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=66.83 E-value=42 Score=29.28 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=42.9
Q ss_pred cceeEEEEEEeCCHHHHHHHHHHhcCCEEE-EEeeCCCCCeEEEEEee------CCCCceEEEEEEecCCCCCCcCCCcc
Q 018138 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLL-RKRDIPEDRYTNAFLGY------GPEDSHFVVELTYNYGVDKYDIGTGF 184 (360)
Q Consensus 112 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~-~~~~~~~~~~~~~~l~~------g~~~~~~~lel~~~~~~~~~~~g~g~ 184 (360)
.-.++||+++|++.+.+.++-+..+..--. ......+ ...+-+.. ++. .--++||..+.+ +.-+-.|+
T Consensus 32 ~~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~ING--RPI~l~~L~qPL~~~~~-~I~~vELP~P~~--K~Yp~eGW 106 (185)
T PF06185_consen 32 QYEIDHIALRVNSNETAERWKQALLQCGELLSENMING--RPICLFKLNQPLQFGGW-SIDCVELPYPKD--KRYPQEGW 106 (185)
T ss_dssp T-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETT--EEEEEEEEEEEEEETTE-EEEEEEEE---S--S--SS-EE
T ss_pred ccCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCC--eeEEEEEcCCchhcCCe-eEEEEEeCCCCC--CCCCCCCc
Confidence 456899999999999999999998865433 2222212 22222222 221 122456655332 22245699
Q ss_pred eEEEEEECC-HHHHHHHH
Q 018138 185 GHFGIAVED-VAKTVDLV 201 (360)
Q Consensus 185 ~hi~f~V~D-ld~~~~rL 201 (360)
-||-|.++. .+...+++
T Consensus 107 EHIE~Vip~~~~~~~~~~ 124 (185)
T PF06185_consen 107 EHIEFVIPSDAQTLLEQA 124 (185)
T ss_dssp EEEEEE--S-GGGHHHHH
T ss_pred eEEEEEecCCHHHHHHHH
Confidence 999999973 33344443
No 193
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=63.96 E-value=30 Score=25.65 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeecCC
Q 018138 193 DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (360)
Q Consensus 193 Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 240 (360)
..+++.+.+++.|+++..- +..+++.+-++..|.||+.+|+.-.+.
T Consensus 30 ~~~~~~~~l~~~G~~v~~v--e~~~~g~yev~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV--EFDDDGCYEVEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHHHhcCCceEEE--EEcCCCEEEEEEEECCCCEEEEEEcCC
Confidence 6789999999999976542 342333345788999999999987654
No 194
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=58.27 E-value=30 Score=25.65 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCc
Q 018138 307 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 353 (360)
Q Consensus 307 Dl~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 353 (360)
...++.+++++.|+++..-. ....+.+.+..+|.||..+++.-+.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve--~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVE--FDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEE--EcCCCEEEEEEEECCCCEEEEEEcC
Confidence 57899999999999765422 2122257788999999999996543
No 195
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=57.65 E-value=59 Score=27.26 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=18.3
Q ss_pred ceeceeeecCHHHHHHHhhh
Q 018138 245 LCQVMLRVGDLDRAINFYKK 264 (360)
Q Consensus 245 i~hv~L~V~D~e~a~~FY~~ 264 (360)
++|+.|+|.+.+.|.+|-+.
T Consensus 2 ~DHialR~n~~~~A~~w~~~ 21 (149)
T cd07268 2 IDHIALRVNENQTAERWKEG 21 (149)
T ss_pred CceEEEeeCCHHHHHHHHHH
Confidence 68999999999999999883
No 196
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.32 E-value=1.2e+02 Score=25.39 Aligned_cols=98 Identities=15% Similarity=0.369 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHhcCCE-EEE--Ee--eCC---CCCeEEEEEeeCCCCceEEEEEEecCCCCCCcCCCcceEEEEEE--C
Q 018138 123 GDLDKTIKFYTECLGMK-LLR--KR--DIP---EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV--E 192 (360)
Q Consensus 123 ~Dle~a~~FY~~vLG~~-~~~--~~--~~~---~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V--~ 192 (360)
.+.+++.+||.++|-=. +.. +. +.+ .+.+..+-+.++... .+.+-.. ....+.... -++|.| +
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~---f~~ld~g-~~~~f~fne---A~S~~v~~~ 86 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQS---FMALDGG-PNTSFKFNE---AFSFQVACD 86 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeE---EEEEcCC-CCcCCCcCc---cEEEEEEcC
Confidence 89999999999998432 221 11 111 122333444443221 2222111 111111111 144444 4
Q ss_pred C---HHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCCEEEEeec
Q 018138 193 D---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (360)
Q Consensus 193 D---ld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iEl~~~ 238 (360)
| +|++..+|.+.|... ....+++|--|.-|.|+-+
T Consensus 87 ~q~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 87 DQEEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred CHHHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcHH
Confidence 4 888899998888621 1246899999999998754
No 197
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=54.19 E-value=1.3e+02 Score=25.23 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=42.8
Q ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCC-----CceEEEEEEecCCCCCCcCCCcceEEEE
Q 018138 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPE-----DSHFVVELTYNYGVDKYDIGTGFGHFGI 189 (360)
Q Consensus 115 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~-----~~~~~lel~~~~~~~~~~~g~g~~hi~f 189 (360)
++||.++|.+.+.+.++-+..+-.--.-.. ..-.+...+-+.+... ..--++||..+.. +.-+..|+-||-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSe-n~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~--k~Yp~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSE-NEINGRPIALIKLEKPLQFAGWSISIVELPFPKD--KKYPQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhc-cccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceEEEE
Confidence 689999999999999999887744322111 1111222333333210 1122455544322 2224568999999
Q ss_pred EECC
Q 018138 190 AVED 193 (360)
Q Consensus 190 ~V~D 193 (360)
.++.
T Consensus 79 Vlp~ 82 (149)
T cd07268 79 VIPS 82 (149)
T ss_pred EecC
Confidence 8863
No 198
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=52.72 E-value=1.2e+02 Score=24.17 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=28.6
Q ss_pred eEEEEEeCC---HHHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEE
Q 018138 299 AQIAIGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 350 (360)
Q Consensus 299 ~hiaf~V~D---l~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 350 (360)
..+++.++| ++.++++|.+.|- +. .+...++|.-|..|.|+
T Consensus 73 ~sl~i~~~~~ee~~~~f~~Ls~gG~---------~~--~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 73 ISLCIECDDEEEIDRIFDKLSEGGQ---------WF--SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EEEEEEESSHHHHHHHHHHHHTTTE---------TC--CEEEEEE-TTS-EEEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHcCCC---------cc--ceeEEEEeCCCCEEEeC
Confidence 566777766 5567788877664 22 47889999999999885
No 199
>PRK11700 hypothetical protein; Provisional
Probab=52.12 E-value=45 Score=29.09 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=19.4
Q ss_pred CCceeceeeecCHHHHHHHhhh
Q 018138 243 EPLCQVMLRVGDLDRAINFYKK 264 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~ 264 (360)
-.++|+.|+|++.+.|.+|-+.
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~ 59 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQG 59 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHH
Confidence 3678999999999999999883
No 200
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.17 E-value=42 Score=22.81 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCHHHHHHHHHHcCCeE
Q 018138 297 GYAQIAIGTDDVYKTAEAIKLSGGKI 322 (360)
Q Consensus 297 g~~hiaf~V~Dl~~~~~~l~~~G~~i 322 (360)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 55788999999999999999999876
No 201
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.76 E-value=44 Score=23.40 Aligned_cols=29 Identities=7% Similarity=0.050 Sum_probs=22.7
Q ss_pred CeeEEEEEe--CCHHHHHHHHHHcCCeEeeC
Q 018138 297 GYAQIAIGT--DDVYKTAEAIKLSGGKITRE 325 (360)
Q Consensus 297 g~~hiaf~V--~Dl~~~~~~l~~~G~~i~~~ 325 (360)
+...+.|.+ +|.+.+.+.|+++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 445566666 48889999999999998874
No 202
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.76 E-value=88 Score=22.76 Aligned_cols=41 Identities=15% Similarity=-0.024 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCeEeeCCcccCCC-CcEEEEEECCCCCeEE
Q 018138 308 VYKTAEAIKLSGGKITREPGPLPGI-NTKITACLDPDGWKSV 348 (360)
Q Consensus 308 l~~~~~~l~~~G~~i~~~p~~~~~~-~~~~~~~~DPdG~~ie 348 (360)
+.+..+.+.+.|+.|....-...+. -...+|++|.+|..+.
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 6688899999999988765433332 2367999999999873
No 203
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.75 E-value=54 Score=22.24 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=22.4
Q ss_pred cceEEEEEECCHHHHHHHHHHcCCeE
Q 018138 183 GFGHFGIAVEDVAKTVDLVKAKGGKV 208 (360)
Q Consensus 183 g~~hi~f~V~Dld~~~~rL~~~G~~~ 208 (360)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45678999999999999999999875
No 204
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=40.87 E-value=56 Score=30.95 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=23.3
Q ss_pred CCCCeeEEEEEe------CCHHHHHHHHHHcCCeEe
Q 018138 294 KGNGYAQIAIGT------DDVYKTAEAIKLSGGKIT 323 (360)
Q Consensus 294 ~g~g~~hiaf~V------~Dl~~~~~~l~~~G~~i~ 323 (360)
.|..++|+...| .||+++.+.++++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 577889999999 999999999999999977
No 205
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.43 E-value=68 Score=22.42 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=21.5
Q ss_pred ceEEEEEE--CCHHHHHHHHHHcCCeEecC
Q 018138 184 FGHFGIAV--EDVAKTVDLVKAKGGKVTRE 211 (360)
Q Consensus 184 ~~hi~f~V--~Dld~~~~rL~~~G~~~~~~ 211 (360)
...+.|++ +|.+.+.+.|+++|+++.++
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 34455555 48889999999999998864
No 206
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.90 E-value=90 Score=28.07 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=27.0
Q ss_pred eCCHHHHHHHHHHhcCCEEEEEeeCCCCCeEEEEEeeCCCC
Q 018138 122 VGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPED 162 (360)
Q Consensus 122 V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~ 162 (360)
..|..++..||.+.||+++.. ..++-...+|-.+.+..
T Consensus 144 sa~~~e~a~wy~dyLGleie~---~hgevikfiFTnIdpkd 181 (246)
T KOG4657|consen 144 SADIHEAASWYNDYLGLEIEA---GHGEVIKFIFTNIDPKD 181 (246)
T ss_pred hhccHHHHHHHHHhcCceeee---ccCceEEEEEeccCCCC
Confidence 357788899999999999963 23344566777766543
No 207
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.69 E-value=1.5e+02 Score=21.61 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCeEecCCeecCCCC-EEEEEEECCCCCEEE
Q 018138 194 VAKTVDLVKAKGGKVTREPGPVKGGN-TVIAFIEDPDGYKFE 234 (360)
Q Consensus 194 ld~~~~rL~~~G~~~~~~p~~~~~g~-~~~~~~~DPdG~~iE 234 (360)
+.++.+-+.+.|+.+...-..-.++. ...+|+.|.+|+.++
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 66778888999999876543332222 237999999998763
No 208
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=35.43 E-value=98 Score=27.05 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=17.0
Q ss_pred CCceeceeeecCHHHHHHHhhh
Q 018138 243 EPLCQVMLRVGDLDRAINFYKK 264 (360)
Q Consensus 243 ~~i~hv~L~V~D~e~a~~FY~~ 264 (360)
-.++|+.|+|++.+.|.+|-+.
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~ 54 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQA 54 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHH
T ss_pred cCCcEEEEecCCHHHHHHHHHH
Confidence 3578999999999999999884
No 209
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=32.44 E-value=97 Score=29.35 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=22.5
Q ss_pred CCcceEEEEEE------CCHHHHHHHHHHcCCeEe
Q 018138 181 GTGFGHFGIAV------EDVAKTVDLVKAKGGKVT 209 (360)
Q Consensus 181 g~g~~hi~f~V------~Dld~~~~rL~~~G~~~~ 209 (360)
|..++|+...| .|++++.+.|+++|+++.
T Consensus 182 G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 182 GYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp TCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 56799999999 999999999999999876
No 210
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=29.08 E-value=1e+02 Score=24.19 Aligned_cols=36 Identities=11% Similarity=-0.016 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCeEeeCCcccCCCCcEEEEEECCCCCeEEEEcCcccc
Q 018138 309 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFL 356 (360)
Q Consensus 309 ~~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 356 (360)
.+..+.|+++|++ .+.+++.+|...+|...+..|+.
T Consensus 27 PE~~a~lk~agi~------------nYSIfLde~~n~lFgy~E~~d~~ 62 (105)
T COG3254 27 PELLALLKEAGIR------------NYSIFLDEEENLLFGYWEYEDFE 62 (105)
T ss_pred HHHHHHHHHcCCc------------eeEEEecCCcccEEEEEEEcChH
Confidence 3677888888877 78899999999999998887654
No 211
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.04 E-value=2.4e+02 Score=20.70 Aligned_cols=41 Identities=7% Similarity=-0.066 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCeEeeCCcccCCC-CcEEEEEECCCCCeEE
Q 018138 308 VYKTAEAIKLSGGKITREPGPLPGI-NTKITACLDPDGWKSV 348 (360)
Q Consensus 308 l~~~~~~l~~~G~~i~~~p~~~~~~-~~~~~~~~DPdG~~ie 348 (360)
+..+...+.+.|+.|....-...+. -...+|++|.+|..+.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 6688889999999987754333332 2357999999999874
No 212
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=20.99 E-value=5.2e+02 Score=21.94 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=44.4
Q ss_pred EEEEECCHHHHHHHHHHcCCeEecCCeecCCCCEEEEEEECCCCC------EEE---------EeecCCCC-C---Ccee
Q 018138 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGY------KFE---------LLERGPTP-E---PLCQ 247 (360)
Q Consensus 187 i~f~V~Dld~~~~rL~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~------~iE---------l~~~~~~~-~---~i~h 247 (360)
+-+.+.|.+++.++|++.|......-... =.||..|++. .+. +.-..+.. . .-..
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~~q~------D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E 79 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKEFQH------DIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKE 79 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccccceE------EEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEE
Confidence 45677899999999999997644321110 1344444421 111 11111111 1 1223
Q ss_pred ceeeecCHHHHHHHhhhcceEEeeecc
Q 018138 248 VMLRVGDLDRAINFYKKYTIAVMGYGP 274 (360)
Q Consensus 248 v~L~V~D~e~a~~FY~~~~~~~lG~~~ 274 (360)
+...|.|.+++.+.+. .||+.+
T Consensus 80 ~e~~v~d~~~~~~iL~-----~LG~~~ 101 (174)
T TIGR00318 80 IEFKIEDIENALQILK-----KLGFKK 101 (174)
T ss_pred EEEEECCHHHHHHHHH-----HCCCeE
Confidence 6678899999999998 578764
No 213
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=20.97 E-value=2.1e+02 Score=21.20 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=16.7
Q ss_pred EEeCCHHHHHHHHHHhcCCEEEEE
Q 018138 120 YRVGDLDKTIKFYTECLGMKLLRK 143 (360)
Q Consensus 120 l~V~Dle~a~~FY~~vLG~~~~~~ 143 (360)
....+-+.+.++|++ |||+...+
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEEE
Confidence 445678899999987 99999854
Done!