BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018141
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/341 (21%), Positives = 145/341 (42%), Gaps = 16/341 (4%)
Query: 27 TEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMA 86
T+ I+ + + +++ + YM +I + AY + Q + F S+ P + + +
Sbjct: 112 TQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLL 171
Query: 87 IHFGIAYAFVY----LTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH--TWEGFSF 140
++ + + FVY LG G +A ++ WI +L+L+ Y++ +K+ H +E F
Sbjct: 172 LNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHK 231
Query: 141 ESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMI 200
++ + +L P AA + E F ++ L + ++ + +A+ N S+ +M
Sbjct: 232 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVAL--NFSSLVFMF 289
Query: 201 TYGLSAAASTRVSNELGAGNPDQAKNAMXXXXXXXXXXXXXXXXXXGFGHNIWAGFFSNS 260
+ AA S RV ++LG + A A A ++ +
Sbjct: 290 PMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTEN 349
Query: 261 PEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILG 320
++ L A+ +D+VQ V +G RG +++ +G+P ILG
Sbjct: 350 QVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 409
Query: 321 F-----KLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTK 356
+ L KG W+G I GL +++ L++ R W +
Sbjct: 410 MTNWLTEQPLGAKGFWLGFIIGL---SAAALMLGQRLYWLQ 447
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 8/260 (3%)
Query: 93 YAFVY----LTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFE--HTWEGFSFESFSFI 146
Y FVY + +LG G +A W S L L Y+ K F F ++
Sbjct: 181 YIFVYGKFGMPALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLTAKFGKPDWAVF 240
Query: 147 LTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSA 206
I K+ P LE AF +VFL + P E + + ++ + YMI + +
Sbjct: 241 KQIWKIGAPIGLSYFLEASAFSFIVFL--IAPFGEDYVAAQQVGISLSGILYMIPQSVGS 298
Query: 207 AASTRVSNELGAGNPDQAKNAMXXXXXXXXXXXXXXXXXXGFGHNIWAGFFSNSPEIIKE 266
A + R+ LG +A+ + A +++ P ++
Sbjct: 299 AGTVRIGFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSI 358
Query: 267 FASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLY 326
+++ L D Q + S RG + ++ + A F+ G+ +L ++ +
Sbjct: 359 ASTVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMG 418
Query: 327 VKGLWIGLICGLFCQASSLL 346
+ G W LI L A +L+
Sbjct: 419 IYGFWTALIASLTIAAVALV 438
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 262 EIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHL-AVWANLATFYFIGMPIAAILG 320
E+I +S T LL S+T + G+ +G G + V NLATF +P +I+
Sbjct: 120 ELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIA 179
Query: 321 FKLSLYVKGL 330
Y++ L
Sbjct: 180 VIYGRYLRKL 189
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 262 EIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHL-AVWANLATFYFIGMPIAAILG 320
E+I +S T LL S+T + G+ +G G + V NLATF +P +I+
Sbjct: 151 ELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIA 210
Query: 321 FKLSLYVKGL 330
Y++ L
Sbjct: 211 VIYGRYLRKL 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,715,229
Number of Sequences: 62578
Number of extensions: 297108
Number of successful extensions: 573
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 6
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)