Query 018141
Match_columns 360
No_of_seqs 189 out of 1900
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:35:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.2E-42 7.5E-47 322.1 29.7 353 1-355 86-449 (460)
2 3mkt_A Multi antimicrobial ext 99.9 2.1E-21 7.1E-26 180.4 15.2 208 141-352 6-217 (460)
3 2ks1_B Epidermal growth factor 23.6 1.1E+02 0.0037 17.3 4.3 8 118-125 28-35 (44)
4 4aps_A DI-OR tripeptide H+ sym 21.4 4.1E+02 0.014 23.3 20.1 24 322-345 445-468 (491)
5 2iub_A CORA, divalent cation t 19.7 4E+02 0.014 22.8 8.1 18 337-354 345-362 (363)
6 2k1k_A Ephrin type-A receptor 18.9 1.1E+02 0.0038 16.6 2.7 16 104-119 14-29 (38)
7 1pw4_A Glycerol-3-phosphate tr 13.2 6.2E+02 0.021 21.6 31.3 25 323-347 408-432 (451)
8 3hd7_B Syntaxin-1A; membrane p 7.9 3.3E+02 0.011 18.7 3.2 14 222-235 73-86 (109)
9 1b9u_A Protein (ATP synthase); 7.3 3.1E+02 0.01 14.0 2.7 24 333-356 5-28 (34)
10 3hd7_A Vesicle-associated memb 7.1 4.9E+02 0.017 17.1 3.6 43 213-255 49-91 (91)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2.2e-42 Score=322.05 Aligned_cols=353 Identities=22% Similarity=0.352 Sum_probs=323.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCchhHHHHH
Q 018141 1 MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF 80 (360)
Q Consensus 1 ~v~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (360)
+.++.+++++.+..+.+++..++..+.+|++.+++.|++..+.+.+|+++..++.++..+....++++|++||++.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (460)
T 3mkt_A 86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI 165 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 46789999999999999998877888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh-c---CCCcchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-cCCCCHHhHHhHHHHHHhHh
Q 018141 81 SALPMAIHFGIAYAFVYL-T---SLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH-T-WEGFSFESFSFILTILKLAL 154 (360)
Q Consensus 81 ~~~~~~~~i~l~~~~i~~-~---~~g~~g~ala~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~ 154 (360)
++++.++|+++++++++. + ++|+.|+++++.+++.+..++.+++.+++++.+. + +++..+.+++..|++++++.
T Consensus 166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (460)
T 3mkt_A 166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245 (460)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence 999999999999999986 3 7999999999999999999998888865543322 1 12233446789999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 018141 155 PSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKL 234 (360)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~ 234 (360)
|.++++....+....++.+++++| ++++++|++++++.++..++..+++++..|.+++++|+||+|+.++..+++.+.
T Consensus 246 p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~ 323 (460)
T 3mkt_A 246 PVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMT 323 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999996 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 018141 235 SVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMP 314 (360)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 314 (360)
...++++.++++.++++++.++|.+|+|..+.+.+++++++++.++.+++....+.+++.||++.+++.++.+.|++++|
T Consensus 324 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 403 (460)
T 3mkt_A 324 GLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLP 403 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHH----hC-CCcceehHHHHHHHHHHHHHHHHHHhccCch
Q 018141 315 IAAILGFK----LS-LYVKGLWIGLICGLFCQASSLLLITLRRKWT 355 (360)
Q Consensus 315 ~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~i~~~~~~~~~~~~ 355 (360)
+++++... ++ +|+.|+|+++.+++.+.++...++++|..++
T Consensus 404 l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 449 (460)
T 3mkt_A 404 TGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ 449 (460)
T ss_dssp HHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred HHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999765 55 9999999999999999998887777665443
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.86 E-value=2.1e-21 Score=180.42 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=192.1
Q ss_pred HhHHhHHHHHHhHhHhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018141 141 ESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGN 220 (360)
Q Consensus 141 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~~~~~~~~g~~~ 220 (360)
.+++..|++++.++|.++.+....+...+|+.+++++| ++++++++.+.++..+...+..+++++..|.+++.+|++|
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35788999999999999999999999999999999976 8899999999999998889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccchhHH
Q 018141 221 PDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLA 300 (360)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 300 (360)
+++.++..+++..+..+.+++..++ ..+.+++..++..|++..+.+..++++.+++.++..+.....+.+|+.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999998765 778899999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hCCCcceehHHHHHHHHHHHHHHHHHHhcc
Q 018141 301 VWANLATFYFIGMPIAAILGFK----LSLYVKGLWIGLICGLFCQASSLLLITLRR 352 (360)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~i~~~~~~~~~ 352 (360)
+..++.+. ++++++++++... |++|+.|+++++.+++.+..+...++.+|+
T Consensus 163 ~~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 163 MVIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999995 8899999988654 379999999999999999998877776654
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.55 E-value=1.1e+02 Score=17.31 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 018141 118 MLMLVTYV 125 (360)
Q Consensus 118 ~~~~~~~~ 125 (360)
.+..+++.
T Consensus 28 ~~~~~~~~ 35 (44)
T 2ks1_B 28 ALGIGLFM 35 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33334444
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=21.45 E-value=4.1e+02 Score=23.26 Aligned_cols=24 Identities=8% Similarity=-0.172 Sum_probs=9.9
Q ss_pred HhCCCcceehHHHHHHHHHHHHHH
Q 018141 322 KLSLYVKGLWIGLICGLFCQASSL 345 (360)
Q Consensus 322 ~~~~g~~G~~~a~~~~~~~~~i~~ 345 (360)
..+.+....+........+..+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 445 YNAKSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp GGGSSTTHHHHHTHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=19.66 E-value=4e+02 Score=22.85 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhccCc
Q 018141 337 GLFCQASSLLLITLRRKW 354 (360)
Q Consensus 337 ~~~~~~i~~~~~~~~~~~ 354 (360)
..++.++..+++++|++|
T Consensus 345 ~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 345 VMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 334455566777888888
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=18.90 E-value=1.1e+02 Score=16.58 Aligned_cols=16 Identities=0% Similarity=-0.147 Sum_probs=7.0
Q ss_pred chhHHHHHHHHHHHHH
Q 018141 104 KGASLAASVSLWISML 119 (360)
Q Consensus 104 ~g~ala~~i~~~~~~~ 119 (360)
.|..++.+.+-.....
T Consensus 14 AGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 3444444444443333
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=13.16 E-value=6.2e+02 Score=21.59 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=12.6
Q ss_pred hCCCcceehHHHHHHHHHHHHHHHH
Q 018141 323 LSLYVKGLWIGLICGLFCQASSLLL 347 (360)
Q Consensus 323 ~~~g~~G~~~a~~~~~~~~~i~~~~ 347 (360)
.+.|....++...+..++..+....
T Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 408 DFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456555555555555555444433
No 8
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=7.89 E-value=3.3e+02 Score=18.66 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 018141 222 DQAKNAMAVTVKLS 235 (360)
Q Consensus 222 ~~~~~~~~~~~~~~ 235 (360)
+++.++-+++.+..
T Consensus 73 ~kA~~yqk~~rkk~ 86 (109)
T 3hd7_B 73 KKAVKYQSKARRKK 86 (109)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcc
Confidence 33444444444433
No 9
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=7.26 E-value=3.1e+02 Score=13.96 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCchh
Q 018141 333 GLICGLFCQASSLLLITLRRKWTK 356 (360)
Q Consensus 333 a~~~~~~~~~i~~~~~~~~~~~~~ 356 (360)
++.+...+++++..+..+|.-|+.
T Consensus 5 ~~l~~~~i~Flil~~~l~kf~~~P 28 (34)
T 1b9u_A 5 ATILGQAIAFVLFVLFCMKYVWPP 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=7.08 E-value=4.9e+02 Score=17.13 Aligned_cols=43 Identities=7% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 018141 213 SNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAG 255 (360)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (360)
|+.+.++-.+--++..++-.++.+++++++.+++++.--.+..
T Consensus 49 s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ii~~~~~~ 91 (91)
T 3hd7_A 49 ASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST 91 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Done!