Query 018141
Match_columns 360
No_of_seqs 189 out of 1900
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 10:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018141.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018141hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56d_ f.23.8.1 (D:) Bacteria 10.8 1.2E+02 0.0085 15.6 3.9 28 216-243 4-31 (42)
2 d1nkzb_ f.3.1.1 (B:) Light-har 4.5 2.6E+02 0.019 13.9 4.6 33 221-253 8-40 (41)
3 d2yvxa3 f.57.1.1 (A:276-448) M 4.5 5.4E+02 0.039 17.6 5.6 30 217-246 70-99 (173)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 3.2 8.9E+02 0.065 18.1 29.9 30 323-352 405-434 (447)
5 d1ppjd2 f.23.11.1 (D:196-241) 2.8 4E+02 0.029 13.7 1.9 12 345-356 23-34 (46)
6 d1qled_ f.23.8.1 (D:) Bacteria 2.6 4.4E+02 0.032 13.3 5.0 27 216-242 5-31 (43)
7 d1su0b_ d.224.1.2 (B:) IscU ho 2.6 7.3E+02 0.053 15.7 5.0 29 203-231 61-89 (136)
8 d1jb0i_ f.23.17.1 (I:) Subunit 2.5 2.8E+02 0.02 13.5 0.9 6 269-274 8-13 (38)
9 d2o3fa1 a.4.1.20 (A:1-83) Puta 2.4 5.8E+02 0.042 14.7 2.6 30 202-231 46-75 (83)
10 d1lghb_ f.3.1.1 (B:) Light-har 2.2 5.3E+02 0.039 13.1 4.3 32 222-253 12-43 (43)
No 1
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.77 E-value=1.2e+02 Score=15.56 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=13.9
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018141 216 LGAGNPDQAKNAMAVTVKLSVLLALVVV 243 (360)
Q Consensus 216 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (360)
.|+-|.+.=+|.+.-.+++..-.++.+.
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i 31 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIV 31 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655555555555555444443333
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=4.45 E-value=2.6e+02 Score=13.93 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018141 221 PDQAKNAMAVTVKLSVLLALVVVLALGFGHNIW 253 (360)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (360)
.|+..+..-.+.+.-..++++.-++.+...+++
T Consensus 8 aEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 8 SEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 456677777777777777777666666555543
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.45 E-value=5.4e+02 Score=17.56 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=19.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018141 217 GAGNPDQAKNAMAVTVKLSVLLALVVVLAL 246 (360)
Q Consensus 217 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (360)
|+-+.++.++..++=...++..+..++.+.
T Consensus 70 g~i~~~~~~~~l~kE~~vgll~G~~l~~i~ 99 (173)
T d2yvxa3 70 RDLDLRDWRRVFLKEMGVGLLLGLTLSFLL 99 (173)
T ss_dssp TCSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333556677777777777777776666544
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.19 E-value=8.9e+02 Score=18.08 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=16.6
Q ss_pred hCCCcceehHHHHHHHHHHHHHHHHHHhcc
Q 018141 323 LSLYVKGLWIGLICGLFCQASSLLLITLRR 352 (360)
Q Consensus 323 ~~~g~~G~~~a~~~~~~~~~i~~~~~~~~~ 352 (360)
.+.|..+.++.......+..++......++
T Consensus 405 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (447)
T d1pw4a_ 405 DFFGWDGGFMVMIGGSILAVILLIVVMIGE 434 (447)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456766666665555555555544444433
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.80 E-value=4e+02 Score=13.71 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=6.3
Q ss_pred HHHHHhccCchh
Q 018141 345 LLLITLRRKWTK 356 (360)
Q Consensus 345 ~~~~~~~~~~~~ 356 (360)
..++.+|..|..
T Consensus 23 l~yy~KR~~Ws~ 34 (46)
T d1ppjd2 23 LVYAMKRHKWSV 34 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 445555555543
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=2.64 E-value=4.4e+02 Score=13.34 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=12.7
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHH
Q 018141 216 LGAGNPDQAKNAMAVTVKLSVLLALVV 242 (360)
Q Consensus 216 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (360)
.|+-|.+.=.+.+.-.+++..-.++.+
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~ 31 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILS 31 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 355555544455544444444444333
No 7
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.55 E-value=7.3e+02 Score=15.71 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 018141 203 GLSAAASTRVSNELGAGNPDQAKNAMAVT 231 (360)
Q Consensus 203 ~i~~a~~~~~~~~~g~~~~~~~~~~~~~~ 231 (360)
++++|...++++..-.++.+++.+.....
T Consensus 61 ai~~ASasil~e~i~gk~~~e~~~l~~~~ 89 (136)
T d1su0b_ 61 TISTASSSMMTDAVIGKSKEEALALADIF 89 (136)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 57788888888888778888887776553
No 8
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=2.49 E-value=2.8e+02 Score=13.46 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=2.3
Q ss_pred HHHHHH
Q 018141 269 SLTPLL 274 (360)
Q Consensus 269 ~~l~i~ 274 (360)
.|++++
T Consensus 8 syLPwI 13 (38)
T d1jb0i_ 8 SFLPWI 13 (38)
T ss_dssp TTHHHH
T ss_pred Hhcchh
Confidence 334433
No 9
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=2.41 E-value=5.8e+02 Score=14.70 Aligned_cols=30 Identities=27% Similarity=0.173 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 018141 202 YGLSAAASTRVSNELGAGNPDQAKNAMAVT 231 (360)
Q Consensus 202 ~~i~~a~~~~~~~~~g~~~~~~~~~~~~~~ 231 (360)
.+++.+...+..+.+|=+.+.+.|..+++.
T Consensus 46 ~~vS~sTi~Rf~kklG~~gf~e~k~~l~~e 75 (83)
T d2o3fa1 46 ANSSDAAVIRLCKSLGLKGFQDLKMRVAGD 75 (83)
T ss_dssp TTCCHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 366777888889999999999988776654
No 10
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=2.16 E-value=5.3e+02 Score=13.06 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018141 222 DQAKNAMAVTVKLSVLLALVVVLALGFGHNIW 253 (360)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (360)
++..+.+.+++..-..++++.-++.+...|++
T Consensus 12 ~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPWl 43 (43)
T d1lghb_ 12 IAVHDQFKTTFSAFIILAAVAHVLVWVWKPWF 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Done!