BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018142
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 9/165 (5%)
Query: 199 GFGKMGVCGLSMGGVHAAMVGSLHPTP-VATLPFLSPHSAVVAFCEGILKHGTAWEALRE 257
G+ K+ V GLS+GGV + +G P + T+ + EG+L++ ++ RE
Sbjct: 84 GYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKK-RE 142
Query: 258 ELAAKKVAMTLEEVRER-MRNVLSLTDV---TRFPIPKIPNAVIFVAATDDGYIPKHS-- 311
+ +++ +E+ ++ M+ + +L ++ R + I V A D I S
Sbjct: 143 GKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSAN 202
Query: 312 VLELQKAWPGSEVRWV-TGGHVSSFLLHNGEFRRAIVDGLNRLPW 355
++ + P +++W GHV + + I L L W
Sbjct: 203 IIYNEIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLESLDW 247
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 21/173 (12%)
Query: 199 GFGKMGVCGLSMGGVHAAMVGSLHPTP-VATLPFLSPHSAVVAFCEGILKH--------G 249
G+ K+ V GLS+GGV + +G P + T+ + EG+L++ G
Sbjct: 83 GYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREG 142
Query: 250 TAWEALREELAAKKVA--MTLEEVRERMRNVLSLTDVTRFPIPKIPNAVIFVAATDDGYI 307
+ E + +E+ K +TL+ ++E + +V D+ P V A D I
Sbjct: 143 KSEEQIEQEMEKFKQTPMLTLKALQELIADVRDHLDLIYAP-------TFVVQARHDEMI 195
Query: 308 PKHS--VLELQKAWPGSEVRWV-TGGHVSSFLLHNGEFRRAIVDGLNRLPWKE 357
S ++ + P +++W GHV + + I L L W E
Sbjct: 196 NPDSANIIYNEIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLESLDWLE 248
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 184 IEEARCLLHWLEWEAGFGKMGVCGLSMGGVHAAMVGSLHPTPVATLPFLSP 234
IE+A +L++++ + + + G S GGV A+M+ L+P + + L+P
Sbjct: 102 IEDANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 184 IEEARCLLHWLEWEAGFGKMGVCGLSMGGVHAAMVGSLHPTPVATLPFLSP 234
IE+A +L++++ + + + G + GGV A+M+ L+P + + L+P
Sbjct: 102 IEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 184 IEEARCLLHWLEWEAGFGKMGVCGLSMGGVHAAMVGSLHPTPVATLPFLSP 234
IE+A +L++++ + + + G + GGV A+M+ L+P + + L+P
Sbjct: 102 IEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|B Chain B, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|C Chain C, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|D Chain D, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|E Chain E, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|F Chain F, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
Length = 548
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 26 ISPPFFSRGWGGSKLELLERLIKQLFPEIEGQ 57
+ PP +RG+ G+ L LLER I QL P+ G
Sbjct: 514 VIPPSHTRGYIGTALRLLERKIAQLPPKKHGN 545
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
Length = 548
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 26 ISPPFFSRGWGGSKLELLERLIKQLFPEIEGQ 57
+ PP +RG+ G+ L LLER I QL P+ G
Sbjct: 514 VIPPSHTRGYIGTALRLLERKIAQLPPKKHGN 545
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 10/162 (6%)
Query: 200 FGKMGVCGLSMGGVHAAMVGSLHPTPVATLPFLSPHSAVVA----FCEGILKHGTAWEAL 255
F K+ + G S GG+ A + + +P+ + + ++ V EGI E
Sbjct: 93 FKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERT 152
Query: 256 REELAA----KKVAMTLEEVRERMRNVLSLTD--VTRFPIPKIPNAVIFVAATDDGYIPK 309
R+ L A A T E+ + +R L D + R +P++ + V D +P+
Sbjct: 153 RKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPR 212
Query: 310 HSVLELQKAWPGSEVRWVTGGHVSSFLLHNGEFRRAIVDGLN 351
+ K GS + + G + L EF + D L
Sbjct: 213 FHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ 254
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 10/162 (6%)
Query: 200 FGKMGVCGLSMGGVHAAMVGSLHPTPVATLPFLSPHSAVVA----FCEGILKHGTAWEAL 255
F K+ + G S GG+ A + + +P+ + + ++ V EGI E
Sbjct: 93 FKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERT 152
Query: 256 REELAA----KKVAMTLEEVRERMRNVLSLTD--VTRFPIPKIPNAVIFVAATDDGYIPK 309
R+ L A A T E+ + +R L D + R +P++ + V D +P+
Sbjct: 153 RKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPR 212
Query: 310 HSVLELQKAWPGSEVRWVTGGHVSSFLLHNGEFRRAIVDGLN 351
+ K GS + + G + L EF + D L
Sbjct: 213 FHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ 254
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 254 ALREELAAKKVAMTLEEVRERMRN----VLSLTDVTRFPIPKIPNAVIFVAATDDGYIPK 309
A ++ A KK + L + N +L D+ R P+ + + + DG +P+
Sbjct: 154 ARQDARALKKTVLALPXPEVDVLNGGLEILKTVDL-RQPLQNVSXPFLRLYGYLDGLVPR 212
Query: 310 HSVLELQKAWPGSEVRWVTGGHVSSFLLHNGEFRRAIV 347
V L K WP SE + F+ H EF +V
Sbjct: 213 KVVPXLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLV 250
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 10/162 (6%)
Query: 200 FGKMGVCGLSMGGVHAAMVGSLHPTPVATLPFLSPHSAVVA----FCEGILKHGTAWEAL 255
F K+ + G + GG+ A + + +P+ + + ++ V EGI E
Sbjct: 93 FKKVSLLGWADGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERT 152
Query: 256 REELAA----KKVAMTLEEVRERMRNVLSLTD--VTRFPIPKIPNAVIFVAATDDGYIPK 309
R+ L A A T E+ + +R L D + R +P++ + V D +P+
Sbjct: 153 RKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPR 212
Query: 310 HSVLELQKAWPGSEVRWVTGGHVSSFLLHNGEFRRAIVDGLN 351
+ K GS + + G + L EF + D L
Sbjct: 213 FHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ 254
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 277 NVLSLTDVTRFPIPKIPNAVIFVAATDDGYIPKHSVLELQKAWPGSEVRWVTGGHVSSFL 336
+L D+ R P+ + + + DG +P+ V L K WP SE + F+
Sbjct: 181 EILKTVDL-RQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFI 239
Query: 337 LHNGEFRRAIV 347
H EF +V
Sbjct: 240 SHPAEFCHLLV 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,313,628
Number of Sequences: 62578
Number of extensions: 468851
Number of successful extensions: 1125
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 15
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)