BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018143
(360 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 273/351 (77%), Positives = 320/351 (91%), Gaps = 2/351 (0%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
MAE TE+E+RVDLEEDNYMEE+DDDVE+Q++ED E++ GD + EEN ++E D SK S
Sbjct: 1 MAEGTEIEERVDLEEDNYMEEIDDDVEDQLDEDGEDDAGDPHAEENVEEEYED-SKTEGS 59
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+KDQS EA+R DT E+E+KPTASV E+EK+KHAQLLALPP+GSEVFIGGLP+D E
Sbjct: 60 QKDQSPEADRIVADTEPAEDEQKPTASVNEEEKEKHAQLLALPPHGSEVFIGGLPRDVIE 119
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
++LRDLCEPIG++FE+RLMKDK+SGESKGFAFV+F+SKE A+KAI+ELHSK+ KGKT+RC
Sbjct: 120 DELRDLCEPIGEIFEIRLMKDKDSGESKGFAFVAFKSKEVARKAIEELHSKDYKGKTLRC 179
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
S+SETKNRLFIGNVPKN TEDEFRK+IE+VGPGVE IELIKDPQ P+RNRGF+F+LYYNN
Sbjct: 180 SISETKNRLFIGNVPKNLTEDEFRKIIEEVGPGVEVIELIKDPQTPTRNRGFAFILYYNN 239
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQVKALYVKNIPDNTSTEKI 299
ACADYSRQKMLNANFKLDG+TPT+SWADPK T PDHSAA+SQVKALYVKNIP+NTSTE++
Sbjct: 240 ACADYSRQKMLNANFKLDGHTPTVSWADPKGTPPDHSAASSQVKALYVKNIPENTSTEQL 299
Query: 300 KELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
K LFQRHG+VTKVVMPPGK+GKRDFGFIHYAERSSALKAV+D EKYEIDG+
Sbjct: 300 KGLFQRHGDVTKVVMPPGKAGKRDFGFIHYAERSSALKAVRDAEKYEIDGQ 350
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 268/353 (75%), Positives = 311/353 (88%), Gaps = 9/353 (2%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
MAE TEVEDRVDL++DNYMEEMDDDVEEQ+E D E GGD N EE EY+ SKAG S
Sbjct: 1 MAEGTEVEDRVDLDDDNYMEEMDDDVEEQIE-DGVEGGGDENVEE-----EYEDSKAGGS 54
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+DQ E + + +++EE PTASV EDEK+KHAQLLALPP+GSE+FIGGLP++A E
Sbjct: 55 GEDQLLEVDESRIANEPLKDEENPTASVDEDEKEKHAQLLALPPHGSEIFIGGLPREALE 114
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
EDLRDLCEPIG+ EVRLMK+++SGESKG+AF+SF++KE A+KAI+ELHSKE KG+TIRC
Sbjct: 115 EDLRDLCEPIGEALEVRLMKNRDSGESKGYAFISFKTKEIAQKAIEELHSKEFKGRTIRC 174
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
SLSE+K+RLFIGNVPK+WT+DEFRKVIED+GPG E IELIKDPQNPSRNRGF+FV YYNN
Sbjct: 175 SLSESKHRLFIGNVPKSWTDDEFRKVIEDIGPGAENIELIKDPQNPSRNRGFAFVEYYNN 234
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
ACADY RQKM ++NFKLDGNTPT+SWADPKST DHSAAA QVKALYVKNIP+NT+TE++K
Sbjct: 235 ACADYGRQKMSSSNFKLDGNTPTVSWADPKSTSDHSAAA-QVKALYVKNIPENTTTEQLK 293
Query: 301 ELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
ELFQRHGEVTKVVMPP KSG KRDFGFIH+AERSSALKAVKDTEK+EIDG++
Sbjct: 294 ELFQRHGEVTKVVMPPAKSGQSKRDFGFIHFAERSSALKAVKDTEKHEIDGQA 346
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+++ A + S+ + D +TP V + + S + AQ+ AL
Sbjct: 230 EYYNNACADYGRQKMSSSNFKLDGNTPTVSWADPKSTS----DHSAAAQVKAL------- 278
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK-GFAFVSFRSKEFAKKAIDEL 168
++ +P++ + E L++L + G+V +V +M +SG+SK F F+ F + A KA+ +
Sbjct: 279 YVKNIPENTTTEQLKELFQRHGEVTKV-VMPPAKSGQSKRDFGFIHFAERSSALKAVKDT 337
Query: 169 HSKELKGKTIRCSLSETKN 187
E+ G+ + SL++ ++
Sbjct: 338 EKHEIDGQALDVSLAKPQS 356
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 254/355 (71%), Positives = 313/355 (88%), Gaps = 11/355 (3%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDP----EEEGGDGNFEENDDDEEYDHSK 56
M+E E+++RVDL+E+NYMEEMDDDVEEQ+++D EEE +G+FEE+ EY+ S
Sbjct: 1 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGVEEENAEGSFEED----EYEDSA 56
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
A A KDQ EA ++D T ++E+K + + EDEK+KH +LLALPP+GSEVFIGGLP+
Sbjct: 57 AEAGGKDQLPEAEKSDIATEFGDDEQK-LSFIDEDEKEKHDELLALPPHGSEVFIGGLPR 115
Query: 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
D E+DLR+LCEP+GD+ EVRLMKD+++GE+KG+AFV+F++KE A+KAI+E+HSKE KGK
Sbjct: 116 DVCEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKGK 175
Query: 177 TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL 236
T+RCSLSETK+RLFIGNVPK WTED+FRKV+E VGPGVETIELIKDPQNPSRNRGF+FVL
Sbjct: 176 TLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVL 235
Query: 237 YYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTST 296
YYNNACADYSRQKM +++FKLDGNTPT++WADPK++PDHS A+SQVKALYVKNIP+N +T
Sbjct: 236 YYNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTT 294
Query: 297 EKIKELFQRHGEVTKVVMPPGKS-GKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
E++KELF+RHGEVTKVVMPPGK+ GKRDFGFIHYAERSSALKAVKDTEKYEIDG+
Sbjct: 295 EQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 349
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/351 (71%), Positives = 310/351 (88%), Gaps = 3/351 (0%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
M+E E+++RVDL+E+NYMEEMDDDVEEQ+++D + G D N E + ++ EY+ S A A
Sbjct: 1 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAG 60
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
KDQ EA ++D T ++E+K + + EDEK+KH +LLALPP+GSEVFIGGLP+D E
Sbjct: 61 GKDQLPEAEKSDIATEFGDDEQK-LSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCE 119
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
+DLR+LCEP+GD+ EVRLMKD+++GE KG+AFV+F++KE A+KAI+E+HSKE KGKT+RC
Sbjct: 120 DDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKAKEVAQKAIEEIHSKEFKGKTLRC 179
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
SLSETK+RLFIGNVPK WTED+FRKV+E VGPGVETIELIKDPQNPSRNRGF+FVLYYNN
Sbjct: 180 SLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNN 239
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
ACADYSRQKM +++FKLDGNTPT++WADPK++PDHS A+SQVKALYVKNIP+N +TE++K
Sbjct: 240 ACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTEQLK 298
Query: 301 ELFQRHGEVTKVVMPPGKS-GKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
ELF+RHGEVTKVVMPPGK+ GKRDFGFIHYAERSSALKAVKDTEKYEIDG+
Sbjct: 299 ELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 349
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 251/351 (71%), Positives = 310/351 (88%), Gaps = 3/351 (0%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
M+E E+++RVDL+E+NYMEEMDDDVEEQ+++D + G D N E + ++ EY+ S A A
Sbjct: 1 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAG 60
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
KDQ EA ++D T ++E+K + + EDEK+KH +LLALPP+GSEVFIGGLP+D E
Sbjct: 61 GKDQLPEAEKSDIATEFGDDEQK-LSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCE 119
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
+DLR+LCEP+GD+ EVRLMKD+++GE KG+AFV+F++KE A+KAI+E+HSKE KGKT+RC
Sbjct: 120 DDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRC 179
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
SLSETK+RLFIGNVPK WTED+FRKV+E VGPGVETIELIKDPQNPSRNRGF+FVLYYNN
Sbjct: 180 SLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNN 239
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
ACADYSRQKM +++FKLDGNTPT++WADPK++PDHS A+SQVKALYVKNIP+N +TE++K
Sbjct: 240 ACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTEQLK 298
Query: 301 ELFQRHGEVTKVVMPPGKS-GKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
ELF+RHGEVTKVVMPPGK+ GKRDFGFIHYAERSSALKAVKDTEKYEIDG+
Sbjct: 299 ELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 349
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/352 (67%), Positives = 303/352 (86%), Gaps = 4/352 (1%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
M+E E++DRVDL+E+NYMEEMDDDVEEQ+++D + G D N E + ++ EY+ + A A
Sbjct: 1 MSEGAEIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAG 60
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+KDQ E ++D EE+E A + E+E++KH +LL+ PP+GSEVFIGGLP+D S+
Sbjct: 61 QKDQFPEGEKSDHGA---EEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSD 117
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
+D+R+LCEP+GD+ E++L+KD+E+GESKG+AFV +++KE A+KAID++H+KE KGKT+RC
Sbjct: 118 DDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRC 177
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
LSETK+RLFIGN+PK WTEDEFRK +E VGPGVE+I+LIKDPQN SRNRGF+FVLYYNN
Sbjct: 178 LLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNN 237
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
ACAD+SRQKM + FKLDG TPT++WADPK++PD SAAASQVKALYVKNIP+N +TE++K
Sbjct: 238 ACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLK 297
Query: 301 ELFQRHGEVTKVVMPPGK-SGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
ELF+RHGEVTKVVMPPGK SGKRDFGFIHYAERSSALKAVK+TEKYEIDG++
Sbjct: 298 ELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQA 349
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 66/135 (48%), Gaps = 11/135 (8%)
Query: 52 YDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFI 111
Y+++ A S + S+ + D TP V + T+ D+ +Q+ AL ++
Sbjct: 235 YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSP---DQSAAASQVKAL-------YV 284
Query: 112 GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171
+P++ + E L++L G+V +V + K SG+ + F F+ + + A KA+ E
Sbjct: 285 KNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKETEKY 343
Query: 172 ELKGKTIRCSLSETK 186
E+ G+ + +++ +
Sbjct: 344 EIDGQALEVVIAKPQ 358
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/352 (68%), Positives = 303/352 (86%), Gaps = 5/352 (1%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
MA+ +EVE+RVDLEEDNYMEEMDDDVEE V+ED + G E D +E + + G
Sbjct: 1 MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRA-GELPEEDVEEVSEEPQVGTD 59
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+D+ ++ +RN+ +E EK ++ + ED+ +KHAQLLALPP+GSEVFIGGL +D E
Sbjct: 60 TEDKFSD-DRNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLE 118
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
EDLRD+CE +G++FE+R++KDK+SGESKG+AF++F++KE A+KAI++LH KE+KGKTIRC
Sbjct: 119 EDLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRC 178
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
SLS++K+RLFIGNVPK+WT+DEFR++IE VGPGVE IELIKDPQNP+RNRGF+FVLYYNN
Sbjct: 179 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNN 238
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
ACADYSRQKM +ANFKLDGN+PT+SWADPKS PD+SAAA QVKALYVKNIP+NT+TE++K
Sbjct: 239 ACADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNSAAA-QVKALYVKNIPENTTTEQLK 297
Query: 301 ELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
ELFQ+HGEVTKV MPPGK+G KRDF FIHYAERSSALKAVK+TEKYEI+G+
Sbjct: 298 ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQ 349
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 44/79 (55%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ +P++ + E L++L + G+V +V + K + FAF+ + + A KA+ E
Sbjct: 282 LYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKET 341
Query: 169 HSKELKGKTIRCSLSETKN 187
E++G+ + L++ ++
Sbjct: 342 EKYEIEGQLLEVVLAKPQS 360
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/359 (67%), Positives = 304/359 (84%), Gaps = 10/359 (2%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEG--------GDGNFEENDDDEEY 52
M+++ + +DRVD EE +Y E D+ EEQVEE EEE G+ N EE D E+Y
Sbjct: 1 MSDARDNDDRVDFEEGSYSEMEDEVEEEQVEEYEEEEEEDEDDDDRGNQNAEERDV-EDY 59
Query: 53 DHSKAGASE-KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFI 111
+K G E +++ AE + N D +++EKP + + E+E++K++ LL+LPP+GSEVFI
Sbjct: 60 GDTKGGDMEAQEEIAEDDDNHIDIETADDDEKPASPIDEEEREKYSHLLSLPPHGSEVFI 119
Query: 112 GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171
GGLP+D EEDLRDLCE IG++FEVRLMKD++SG+SKG+AFV+F++K+ A+KAI++LHSK
Sbjct: 120 GGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEDLHSK 179
Query: 172 ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
E KGKTIRCSLSETKNRLFIGN+PKNWTEDEFRKVIE+VGPGVE IELIKDP N +RNRG
Sbjct: 180 EFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIENVGPGVENIELIKDPANTTRNRG 239
Query: 232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP 291
F+FVLYYNNACADYSRQKM+++NFKL+GN PT++WADPKS+P+HSAAA+QVKALYVKNIP
Sbjct: 240 FAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIP 299
Query: 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+NTSTE++KELFQRHGEVTK+V PPGK GKRDFGF+HYAERSSALKAVKDTE+YE++G+
Sbjct: 300 ENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQ 358
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/360 (65%), Positives = 306/360 (85%), Gaps = 11/360 (3%)
Query: 1 MAESTEVEDRVDLEEDNY--------MEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEY 52
M+++ + +DRVD EE +Y E++++ EE+ E+D +++ G+ N EE + E+Y
Sbjct: 1 MSDARDNDDRVDFEEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEEREV-EDY 59
Query: 53 DHSKAGASE--KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVF 110
+K G E +++ AE + N D +++EKP + + +++++K++ LL+LPP+GSEVF
Sbjct: 60 GDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVF 119
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
IGGLP+D EEDLRDLCE IG++FEVRLMKD++SG+SKG+AFV+F++K+ A+KAI+ELHS
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHS 179
Query: 171 KELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
KE KGKTIRCSLSETKNRLFIGN+PKNWTEDEFRKVIEDVGPGVE IELIKDP N +RNR
Sbjct: 180 KEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNR 239
Query: 231 GFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
GF+FVLYYNNACADYSRQKM+++NFKL+GN PT++WADPKS+P+HSAAA+QVKALYVKNI
Sbjct: 240 GFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNI 299
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
P+NTSTE++KELFQRHGEVTK+V PPGK GKRDFGF+HYAERSSALKAVKDTE+YE++G+
Sbjct: 300 PENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQ 359
>gi|255578218|ref|XP_002529977.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530539|gb|EEF32420.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 557
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/352 (68%), Positives = 291/352 (82%), Gaps = 31/352 (8%)
Query: 1 MAESTEVEDRVDL-EEDNYMEEMDDDVEEQVEEDPEEEGGDGNFE-ENDDDEEYDHSKAG 58
MAE TEVE+RVDL EEDNYMEEM+DDVE+Q++ED +++ + + E + +E+ D SK
Sbjct: 1 MAEGTEVEERVDLDEEDNYMEEMEDDVEDQLDEDGDDDDDNRDANVEENAEEDDDDSKTE 60
Query: 59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDA 118
S++DQS E R ++ +E++EKPTASV E+EK+KHAQLL+LPP+GSEVFIGGLPKDA
Sbjct: 61 GSQEDQSPEIARKCTNSEPLEDDEKPTASVNEEEKEKHAQLLSLPPHGSEVFIGGLPKDA 120
Query: 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
E+DLRDLCEPIGD+FE+RLMKDK++GESKGFAFV+FRSKE A+KAI+E+HSKE KGKT+
Sbjct: 121 LEDDLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEEIHSKEFKGKTL 180
Query: 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238
RCSLSETKNRLF+GNVPKNWTEDEFRKV+E+VGPGV+ IELI+DPQNPSRNRGF+FVLYY
Sbjct: 181 RCSLSETKNRLFVGNVPKNWTEDEFRKVVEEVGPGVDIIELIRDPQNPSRNRGFAFVLYY 240
Query: 239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
NNACADYSRQKMLNANFKL+GNTPT+SWADPK TPD SAAA+QVKALYVKNIP+NTSTE+
Sbjct: 241 NNACADYSRQKMLNANFKLEGNTPTVSWADPKGTPDQSAAAAQVKALYVKNIPENTSTEQ 300
Query: 299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+KELFQRHGE AV+D EKY+IDG+
Sbjct: 301 LKELFQRHGE-----------------------------AVRDNEKYQIDGQ 323
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/386 (60%), Positives = 306/386 (79%), Gaps = 37/386 (9%)
Query: 1 MAESTEVEDRVDLEEDNY--------MEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEY 52
M+++ + +DRVD EE +Y E++++ EE+ E+D +++ G+ N EE + E+Y
Sbjct: 1 MSDARDNDDRVDFEEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEEREV-EDY 59
Query: 53 DHSKAGASE--KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVF 110
+K G E +++ AE + N D +++EKP + + +++++K++ LL+LPP+GSEVF
Sbjct: 60 GDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVF 119
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVR--------------LMKDKESGESKGFAFVSFR 156
IGGLP+D EEDLRDLCE IG++FEVR LMKD++SG+SKG+AFV+F+
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRTAIIFVFHDILFVRLMKDRDSGDSKGYAFVAFK 179
Query: 157 SKEFAKKAIDELHSKELK------------GKTIRCSLSETKNRLFIGNVPKNWTEDEFR 204
+K+ A+KAI+ELHSKE K GKTIRCSLSETKNRLFIGN+PKNWTEDEFR
Sbjct: 180 TKDVAQKAIEELHSKEFKASSTANCSLSLSGKTIRCSLSETKNRLFIGNIPKNWTEDEFR 239
Query: 205 KVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
KVIEDVGPGVE IELIKDP N +RNRGF+FVLYYNNACADYSRQKM+++NFKL+GN PT+
Sbjct: 240 KVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTV 299
Query: 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF 324
+WADPKS+P+HSAAA+QVKALYVKNIP+NTSTE++KELFQRHGEVTK+V PPGK GKRDF
Sbjct: 300 TWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDF 359
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGK 350
GF+HYAERSSALKAVKDTE+YE++G+
Sbjct: 360 GFVHYAERSSALKAVKDTERYEVNGQ 385
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/314 (68%), Positives = 271/314 (86%), Gaps = 11/314 (3%)
Query: 39 GDGNFEENDDDEEYDHSKAGASE--KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKH 96
G+ N EE + E+Y +K G E +++ AE + N D +++EKP + + +++++K+
Sbjct: 27 GNQNAEEREV-EDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKY 85
Query: 97 AQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFR 156
+ LL+LPP+GSEVFIGGLP+D EEDLRDLCE IG++FEVRLMKD++SG+SKG+AFV+F+
Sbjct: 86 SHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFK 145
Query: 157 SKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+K+ A+KAI+ELHSKE KGKTIRCSLSETKNRLFIGN+PKNWTEDEFRKVIEDVGPG
Sbjct: 146 TKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPG--- 202
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
DP N +RNRGF+FVLYYNNACADYSRQKM+++NFKL+GN PT++WADPKS+P+HS
Sbjct: 203 -----DPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHS 257
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
AAA+QVKALYVKNIP+NTSTE++KELFQRHGEVTK+V PPGK GKRDFGF+HYAERSSAL
Sbjct: 258 AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 317
Query: 337 KAVKDTEKYEIDGK 350
KAVKDTE+YE++G+
Sbjct: 318 KAVKDTERYEVNGQ 331
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/361 (63%), Positives = 299/361 (82%), Gaps = 13/361 (3%)
Query: 1 MAESTEVEDRVDLEEDNY--------MEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEY 52
M+++ + +DRVD EE +Y E++++ EE+ E+D +++ G+ N EE + E+Y
Sbjct: 1 MSDARDNDDRVDFEEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEEREV-EDY 59
Query: 53 DHSKAGASE--KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVF 110
+K G E +++ AE + N D +++EKP + + +++++K++ LL+LPP+GSEVF
Sbjct: 60 GDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVF 119
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
IGGLP+D EEDLRDLCE IG++FEVRLMKD++SG+SKG+AFV+F++K+ A+KAI+ELHS
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHS 179
Query: 171 KELKGK-TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRN 229
KE K T CSLS NRLFIGN+PKNWTEDEFRKVIEDVGPGVE IELIKDP N +RN
Sbjct: 180 KEFKASSTANCSLS-LSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRN 238
Query: 230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKN 289
RGF+FVLYYNNACADYSRQKM+++NFKL+GN PT++WADPKS+P+HSAAA+QVKALYVKN
Sbjct: 239 RGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKN 298
Query: 290 IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
IP+NTSTE++KELFQRHGEVTK+V PPGK GKRDFGF+HYAERSSALKAVKDTE+YE++G
Sbjct: 299 IPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNG 358
Query: 350 K 350
+
Sbjct: 359 Q 359
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/290 (61%), Positives = 237/290 (81%), Gaps = 3/290 (1%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
M+E E++DRVDL+E+NYMEEMDDDVEEQ+++D + G D N E + ++ EY+ + A A
Sbjct: 1 MSEGAEIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAG 60
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+KDQ E ++D EE+E A + E+E++KH +LL+ PP+GSEVFIGGLP+D S+
Sbjct: 61 QKDQFPEGEKSDHGA---EEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSD 117
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
+D+R+LCEP+GD+ E++L+KD+E+GESKG+AFV +++KE A+KAID++H+KE KGKT+RC
Sbjct: 118 DDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRC 177
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
LSETK+RLFIGN+PK WTEDEFRK +E VGPGVE+I+LIKDPQN SRNRGF+FVLYYNN
Sbjct: 178 LLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNN 237
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
ACAD+SRQKM + FKLDG TPT++WADPK++PD SAAASQ V+ +
Sbjct: 238 ACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQFYRTAVQPV 287
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/71 (85%), Positives = 69/71 (97%), Gaps = 1/71 (1%)
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGKRDFGFIHYAERSSALKAVK 340
VKALYVKNIP+N +TE++KELF+RHGEVTKVVMPPGK SGKRDFGFIHYAERSSALKAVK
Sbjct: 359 VKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVK 418
Query: 341 DTEKYEIDGKS 351
+TEKYEIDG++
Sbjct: 419 ETEKYEIDGQA 429
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 165/277 (59%), Positives = 227/277 (81%), Gaps = 7/277 (2%)
Query: 79 EEEEKPTASVG---EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE 135
+E + P S G EDE KH++LLALPP+GSEV++GG+P DASEEDL++ CE IG+V E
Sbjct: 37 DEADSPKGSDGDEEEDEHRKHSELLALPPHGSEVYLGGIPPDASEEDLKEFCESIGEVTE 96
Query: 136 VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVP 195
+R+MK K+S ESKG+AFV+FR+KE A KAI+EL++ E KGK ++CS S+ +RLFIGNVP
Sbjct: 97 IRIMKGKDSSESKGYAFVTFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVP 156
Query: 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255
+NW E++ +K ++ GPGV ++EL+KDPQNPSRNRGF+F+ YYN+ACA+YSR+ M + F
Sbjct: 157 RNWGEEDMKKAVKKTGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKMMSSPEF 216
Query: 256 KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315
KLD N PT+SWADPK+ S+AASQVKA+YVKN+P++ + +++++LF+ HG+VTKVV+P
Sbjct: 217 KLDDNAPTVSWADPKNA--GSSAASQVKAVYVKNLPEDINQDRLRQLFEHHGKVTKVVLP 274
Query: 316 PGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
P K G K FGF+H+AERSSA+KA+K+TEKY+IDG+
Sbjct: 275 PAKPGHEKSRFGFVHFAERSSAMKALKNTEKYKIDGQ 311
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+H+ A S K S+ + DD+ P V + A + K V
Sbjct: 197 EYYNHACAEYSRKMMSSPEFKLDDNAPTVSWADPKNAGSSAASQVK------------AV 244
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ LP+D +++ LR L E G V +V L K E F FV F + A KA+
Sbjct: 245 YVKNLPEDINQDRLRQLFEHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSAMKALKNTE 304
Query: 170 SKELKGKTIRCSLSETKNRL 189
++ G+ + CSL++ + L
Sbjct: 305 KYKIDGQVLDCSLAKPQADL 324
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 226/279 (81%), Gaps = 8/279 (2%)
Query: 78 VEEEEKPTASVG----EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDV 133
+E++ P+ G EDE KHA+LLALPP+GSEV++GG+ +DASEEDL+ CE +G+V
Sbjct: 91 ADEQKSPSGGGGKIEDEDESKKHAELLALPPHGSEVYVGGISQDASEEDLKSFCESVGEV 150
Query: 134 FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGN 193
EVR+MK K+SGE+KGFAFV+FR+ E A KAI+EL++ E KG+ I+CS S+ K+RLFIGN
Sbjct: 151 TEVRIMKGKDSGENKGFAFVTFRNVELASKAIEELNNTEFKGRKIKCSTSQAKHRLFIGN 210
Query: 194 VPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253
VP++W E++ +KV+ ++GPGV +EL+KD +N S NRGF+F+ YYN+ACA+YSRQKM+N
Sbjct: 211 VPRSWGEEDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNP 270
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV 313
FKLD N PT+SWADPK+ S+ ASQVKA+YVKN+P N + +++K+LF+ HG++TKVV
Sbjct: 271 KFKLDNNAPTVSWADPKNA--DSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVV 328
Query: 314 MPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+PP KSG K GF+H+AERSSA+KA+K+TEKYEIDG+
Sbjct: 329 LPPAKSGQEKSRIGFVHFAERSSAMKALKNTEKYEIDGQ 367
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
V++ LPK+ +++ L+ L E G + +V L K E FV F + A KA+
Sbjct: 300 VYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSAMKALKNT 359
Query: 169 HSKELKGKTIRCSLSETK 186
E+ G+ + CSL++ +
Sbjct: 360 EKYEIDGQVLECSLAKPQ 377
>gi|255578939|ref|XP_002530322.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530126|gb|EEF32038.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 481
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 161/264 (60%), Positives = 220/264 (83%), Gaps = 4/264 (1%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
G+DE+ KHA+LLALPP+GSEV++GG+P DASE+DLR CE IG+V EVR+MK K S ++K
Sbjct: 92 GQDEERKHAELLALPPHGSEVYLGGIPIDASEQDLRHFCESIGEVTEVRIMKGKASSDTK 151
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208
G+AFV+FRSKE A KAI++L++ E KG+ I+CS S+ +RLF+GNVP++W E + +V+
Sbjct: 152 GYAFVTFRSKELASKAIEQLNNTEFKGRKIKCSTSQANHRLFLGNVPRDWEEKDMMQVVM 211
Query: 209 DVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD 268
+GPGV ++EL+KDPQN SRNRGF+F+ YYN+ACADYSR+KM N FKLD N PT+SWAD
Sbjct: 212 KIGPGVISVELLKDPQNSSRNRGFAFIEYYNHACADYSRKKMSNPQFKLDDNAPTVSWAD 271
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGF 326
PK+ S+AASQVKA+YVKN+P + + +++++LF+RHG+VTKVV+PP K+G + F F
Sbjct: 272 PKNA--GSSAASQVKAVYVKNLPHDITQDRLRQLFERHGKVTKVVVPPAKAGHERSRFAF 329
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+H+AERSSA+KA+K+TEKYEIDG+
Sbjct: 330 VHFAERSSAMKALKNTEKYEIDGQ 353
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 12/137 (8%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+H+ A S K S + DD+ P V + A + K V
Sbjct: 239 EYYNHACADYSRKKMSNPQFKLDDNAPTVSWADPKNAGSSAASQVK------------AV 286
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ LP D +++ LR L E G V +V + K E FAFV F + A KA+
Sbjct: 287 YVKNLPHDITQDRLRQLFERHGKVTKVVVPPAKAGHERSRFAFVHFAERSSAMKALKNTE 346
Query: 170 SKELKGKTIRCSLSETK 186
E+ G+ + CSL++ +
Sbjct: 347 KYEIDGQVLECSLAKPQ 363
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 164/262 (62%), Positives = 219/262 (83%), Gaps = 1/262 (0%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+E+ K +LALPP+GSEVFIGGLP+D +EEDLR+LCEP+G+++EVRL KDK++ E+KG
Sbjct: 88 EEERSKWDDMLALPPHGSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKG 147
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F KE A++AI+++ +E KG+T+RCSLS+ K+RLF+GNVPK +E+E I+
Sbjct: 148 FAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKG 207
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +P+RNRGF FV YYN+ACADY+RQK+ + NFK+DG+ T+SWA+P
Sbjct: 208 KGPGVINIEMFKDQHDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEP 267
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIH 328
K + D S+AA+QVK +YVKN+P+N S EKIK+LF +HGEVTK+V+PP K+G KRDFGF+H
Sbjct: 268 KGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVH 327
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
+AERSSALKAVK +EKYEIDG+
Sbjct: 328 FAERSSALKAVKGSEKYEIDGQ 349
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++ S+E ++DL + G+V ++ L K +G + F FV F + A KA+
Sbjct: 283 IYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 341
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + S+++
Sbjct: 342 EKYEIDGQVLEVSMAK 357
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 165/265 (62%), Positives = 219/265 (82%), Gaps = 8/265 (3%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
DE+ KHA+LLALPP+GSEV++GG+P DASE DL++ CE IG+V EVR+MK K+S ESKG+
Sbjct: 73 DEQRKHAELLALPPHGSEVYLGGIPPDASEGDLKEFCESIGEVTEVRIMKGKDSSESKGY 132
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
AFVSFR+KE A KAI+EL++ E KGK ++CS S+ +RLFIGNVP+NW E+ +K ++ +
Sbjct: 133 AFVSFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVPRNWGEENMKKAVKKI 192
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
GPGV ++EL+KDPQNPSRNRGF+F+ YYN+ACA+YSR+KM N FKLD N PT+SWADPK
Sbjct: 193 GPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKKMSNPEFKLDDNAPTVSWADPK 252
Query: 271 STPDHSAAASQ----VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDF 324
+ S+AASQ VKA+YVKN+P++ + + +++LF+ HG+VTKVV+PP K G K F
Sbjct: 253 NA--GSSAASQVCCSVKAVYVKNLPEDITQDGLRQLFEHHGKVTKVVLPPAKPGHEKSRF 310
Query: 325 GFIHYAERSSALKAVKDTEKYEIDG 349
GF+H+AERSSA+KA+K+TEKYEIDG
Sbjct: 311 GFVHFAERSSAMKALKNTEKYEIDG 335
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 8/135 (5%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+H+ A S K S + DD+ P V + A +Q+ + V
Sbjct: 218 EYYNHACAEYSRKKMSNPEFKLDDNAPTVSWADPKNAG-----SSAASQVCC---SVKAV 269
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ LP+D +++ LR L E G V +V L K E F FV F + A KA+
Sbjct: 270 YVKNLPEDITQDGLRQLFEHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSAMKALKNTE 329
Query: 170 SKELKGKTIRCSLSE 184
E+ G + CSL++
Sbjct: 330 KYEIDGHVLDCSLAK 344
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 168/266 (63%), Positives = 219/266 (82%), Gaps = 5/266 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK K +LLALPP GSEVF+GGLP+D +EEDLR LCEP+G++FEVRLMKDKE+ E+KG
Sbjct: 92 EEEKMKWEELLALPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKG 151
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F +K+ A+ AI+ELH K+ KG+T+RCSLS+ K+RLF+GNVPK +E+E +I+
Sbjct: 152 FAFVTFTAKDVAQHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 211
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD NPSRNRGF FV YYN+ACADY+RQK+ + +FK+DG+ T+SWA+P
Sbjct: 212 KGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAEP 271
Query: 270 KSTPDHSAA----ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDF 324
K + S+ A+QVK +YVKN+P+N S EK+K+LF+ HGEVTK+V+PP K+G KRDF
Sbjct: 272 KGSSSSSSDSSSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDF 331
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGK 350
GF+H+AERSSALKAVK +EKYEIDG+
Sbjct: 332 GFVHFAERSSALKAVKGSEKYEIDGQ 357
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++ S+E ++DL E G+V ++ L K +G + F FV F + A KA+
Sbjct: 291 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 349
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + S+++
Sbjct: 350 EKYEIDGQVLEVSMAK 365
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/259 (65%), Positives = 217/259 (83%), Gaps = 1/259 (0%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K K +LLALPP GSEVFIGGLP+D +EEDLR+LC+ G+++EVRLMKDKE+ E+KGFAF
Sbjct: 93 KRKWDELLALPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAF 152
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
V+F +K+ A++AI+ELH KE KG+T+RCSLS+ K+RLF+GNVPK E+E RK+I+ GP
Sbjct: 153 VNFTAKDAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGP 212
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GV IE+ KD +PSRNRGF FV YYN+ACADY+RQK+ NFK+DG+ T+SWA+PK +
Sbjct: 213 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPKGS 272
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAE 331
D S+AA+QVK +YVKN+P+N S EKIKE+F++HGEVTKVV+PP K G KRDFGF+H+AE
Sbjct: 273 SDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAE 332
Query: 332 RSSALKAVKDTEKYEIDGK 350
RSSALKAVK +EKYE DG+
Sbjct: 333 RSSALKAVKGSEKYEFDGQ 351
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++AS+E ++++ E G+V +V L K+ G + F FV F + A KA+
Sbjct: 285 IYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKD-GHKRDFGFVHFAERSSALKAVKGS 343
Query: 169 HSKELKGKTIRCSLSE 184
E G+ + S+++
Sbjct: 344 EKYEFDGQVLEVSMAK 359
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 219/262 (83%), Gaps = 1/262 (0%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDE+ K +LLALPP+GS+VFIGGLP+D +E+DLR+LCEP+G+++EVRL KDK++ E+KG
Sbjct: 102 EDERSKWDELLALPPHGSQVFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKG 161
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F K+ A++AI+++ +E KG+T+RCSLS+ K+RLFIGNVPK +E+E +I+
Sbjct: 162 FAFVTFTDKDAAQRAIEDVQDREYKGRTLRCSLSQAKHRLFIGNVPKGLSEEELTNIIKG 221
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +P+RNRGF FV YYN+ACA+Y+R K+ + NFK+DG+ T+SWA+P
Sbjct: 222 KGPGVVNIEMFKDQHDPNRNRGFLFVEYYNHACAEYARLKLSSRNFKVDGSQLTVSWAEP 281
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIH 328
K D S+AA+QVK +YVKN+P+N S EKIK+LF +HGEVTK+V+PP K+G KRDFGF+H
Sbjct: 282 KGQTDPSSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVH 341
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
+AERSSALKAVK +EKYEIDG+
Sbjct: 342 FAERSSALKAVKGSEKYEIDGQ 363
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++ S+E ++DL + G+V ++ L K +G + F FV F + A KA+
Sbjct: 297 IYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 355
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + S+++
Sbjct: 356 EKYEIDGQVLEVSMAK 371
>gi|224068117|ref|XP_002302667.1| predicted protein [Populus trichocarpa]
gi|222844393|gb|EEE81940.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 184/281 (65%), Positives = 222/281 (79%), Gaps = 33/281 (11%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
MAE TE+E+RVDLEEDNYMEE+DDDV++Q++ED E++ GD + EEN ++E D G
Sbjct: 1 MAEGTEIEERVDLEEDNYMEEIDDDVQDQLDEDGEDDAGDAHAEENVEEEYEDSKPEGK- 59
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
EKDKHAQLL+LPP+GSEVFIGGLPKD E
Sbjct: 60 -------------------------------EKDKHAQLLSLPPHGSEVFIGGLPKDVIE 88
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
++LRDLCE IG++FE+RLMKDK++GESKGFAFV+F+SKE A+KA +EL SK+ KGKT+RC
Sbjct: 89 DELRDLCETIGEIFEIRLMKDKDTGESKGFAFVAFKSKEVARKATEELRSKDYKGKTLRC 148
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
S+SETKNRLFIGNVPKN TEDEFRK+IE+VGPG+E +ELIKDPQ P+RNRGF+F+LYYNN
Sbjct: 149 SISETKNRLFIGNVPKNLTEDEFRKIIEEVGPGMEVLELIKDPQTPTRNRGFAFILYYNN 208
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAAS 280
ACADYSRQKMLNANFKLDG+TPT+SWADPK PDHS AA+
Sbjct: 209 ACADYSRQKMLNANFKLDGHTPTVSWADPKGMPPDHSPAAA 249
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 170/259 (65%), Positives = 217/259 (83%), Gaps = 1/259 (0%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K K +LLALPP GSEVFIGGLP+D +EEDLR+LC+ G+++EVRLMKDKE+ E+KGFAF
Sbjct: 90 KRKWDELLALPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAF 149
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
V+F +KE A++AI+ELH KE KG+T+RCSLS+ K+RLF+GNVPK E+E RK+I+ GP
Sbjct: 150 VNFTAKEAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGP 209
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GV IE+ KD +PSRNRGF FV YYN+ACADY+RQK+ NFK+DG+ T+SWA+PK +
Sbjct: 210 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPKGS 269
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAE 331
D S+AA+QVK +YVKN+P+N S EKIKE+F++HGEVTKVV+PP K G KRDFGF+H+AE
Sbjct: 270 SDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAE 329
Query: 332 RSSALKAVKDTEKYEIDGK 350
RSSALKAVK +EKYE +G+
Sbjct: 330 RSSALKAVKGSEKYEFNGQ 348
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++AS+E ++++ E G+V +V L K+ G + F FV F + A KA+
Sbjct: 282 IYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKD-GHKRDFGFVHFAERSSALKAVKGS 340
Query: 169 HSKELKGKTIRCSLSE 184
E G+ + S+++
Sbjct: 341 EKYEFNGQVLEVSMAK 356
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 159/258 (61%), Positives = 216/258 (83%), Gaps = 4/258 (1%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
KHA+LLALPP+GSEV++GG+ +DASEEDL+ CE +G+V EVR+MK K+SGE+KGFAFV+
Sbjct: 43 KHAELLALPPHGSEVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVT 102
Query: 155 FRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
FR+ E A KAI+EL++ E KG+ I+CS S+ K+RLFIGNVP++W E++ +KV+ ++GPGV
Sbjct: 103 FRNVELASKAIEELNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIGPGV 162
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+EL+KD +N S NRGF+F+ YYN+ACA+YSRQKM+N FKLD N PT+SWADPK+
Sbjct: 163 TAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDNNAPTVSWADPKNA-- 220
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAER 332
S+ ASQVKA+YVKN+P N + +++K+LF+ HG++TKVV+PP KSG K GF+H+AER
Sbjct: 221 DSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAER 280
Query: 333 SSALKAVKDTEKYEIDGK 350
SSA+KA+K+TEKYEIDG+
Sbjct: 281 SSAMKALKNTEKYEIDGQ 298
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
V++ LPK+ +++ L+ L E G + +V L K E FV F + A KA+
Sbjct: 231 VYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSAMKALKNT 290
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + CSL++
Sbjct: 291 EKYEIDGQVLECSLAK 306
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 163/262 (62%), Positives = 218/262 (83%), Gaps = 3/262 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+E+ K +LALPP+GSEVFIGGLP+D +EEDLR+LCEP+G+++EVRL KDK++ E+KG
Sbjct: 88 EEERSKWDDMLALPPHGSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKG 147
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F KE A++AI+++ +E KG+T+RCSLS+ K+RLF+GNVPK +E+E I+
Sbjct: 148 FAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKG 207
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ K +P+RNRGF FV YYN+ACADY+RQK+ + NFK+DG+ T+SWA+P
Sbjct: 208 KGPGVINIEMFK--HDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEP 265
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIH 328
K + D S+AA+QVK +YVKN+P+N S EKIK+LF +HGEVTK+V+PP K+G KRDFGF+H
Sbjct: 266 KGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVH 325
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
+AERSSALKAVK +EKYEIDG+
Sbjct: 326 FAERSSALKAVKGSEKYEIDGQ 347
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++ S+E ++DL + G+V ++ L K +G + F FV F + A KA+
Sbjct: 281 IYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 339
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + S+++
Sbjct: 340 EKYEIDGQVLEVSMAK 355
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 155/262 (59%), Positives = 219/262 (83%), Gaps = 4/262 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++E +HA+LLALPP+GSEV++GG+P +ASEEDLR CEP+G+V EVR++K K+S E+KG
Sbjct: 104 DNENRRHAELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKG 163
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AFV+FR+KE A KA++EL++ E+KG+ I+CS S+ K+RLFI NVP+ W E++ +KV+ +
Sbjct: 164 YAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTE 223
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV ++L KDPQN SRNRGF+F+ YYN+ACA+YSR+KM N FKLD N T+SWADP
Sbjct: 224 IGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADP 283
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD--FGFI 327
K+ S+AASQVKA+Y+KN+P + ++++ELF +HG++TKVV+PP K+G+ + FGF+
Sbjct: 284 KNV--ESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFV 341
Query: 328 HYAERSSALKAVKDTEKYEIDG 349
H+AERSSA+KA+K+TEKYEIDG
Sbjct: 342 HFAERSSAMKALKNTEKYEIDG 363
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
V+I LPK +++ LR+L G + +V + K E+ F FV F + A KA+
Sbjct: 297 VYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSAMKALKNT 356
Query: 169 HSKELKGKTIRCSLSE 184
E+ G + CSL++
Sbjct: 357 EKYEIDGHILGCSLAK 372
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 155/262 (59%), Positives = 219/262 (83%), Gaps = 4/262 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++E +HA+LLALPP+GSEV++GG+P +ASEEDLR CEP+G+V EVR++K K+S E+KG
Sbjct: 75 DNENRRHAELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKG 134
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AFV+FR+KE A KA++EL++ E+KG+ I+CS S+ K+RLFI NVP+ W E++ +KV+ +
Sbjct: 135 YAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTE 194
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV ++L KDPQN SRNRGF+F+ YYN+ACA+YSR+KM N FKLD N T+SWADP
Sbjct: 195 IGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADP 254
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD--FGFI 327
K+ S+AASQVKA+Y+KN+P + ++++ELF +HG++TKVV+PP K+G+ + FGF+
Sbjct: 255 KNV--ESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFV 312
Query: 328 HYAERSSALKAVKDTEKYEIDG 349
H+AERSSA+KA+K+TEKYEIDG
Sbjct: 313 HFAERSSAMKALKNTEKYEIDG 334
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+H+ A S K S + D++ V + E +Q+ A V
Sbjct: 221 EYYNHACAEYSRKKMSNPKFKLDNNASTVSWADPKNV-----ESSAASQVKA-------V 268
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
+I LPK +++ LR+L G + +V + K E+ F FV F + A KA+
Sbjct: 269 YIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSAMKALKNTE 328
Query: 170 SKELKGKTIRCSLSE 184
E+ G + CSL++
Sbjct: 329 KYEIDGHILGCSLAK 343
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 167/266 (62%), Positives = 220/266 (82%), Gaps = 5/266 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+DEK K +LLALP G EVFIGGLP+D +EEDLR+LCEP+G++ EVRLMKDK++ E+KG
Sbjct: 94 DDEKRKWDELLALPQQGCEVFIGGLPRDTTEEDLRELCEPLGEIHEVRLMKDKDTKENKG 153
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F +K+ A++AI+ELH K+ KG+T+RCSLS+ K+RLF+GNVPK +EDE +I+
Sbjct: 154 FAFVTFTAKDVAQRAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELTSIIKG 213
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +PSRNRGF FV YYN+ACADYSRQK+ + +FK+DG+ T+SWA+P
Sbjct: 214 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYSRQKLSSPDFKVDGSQLTVSWAEP 273
Query: 270 KS----TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDF 324
K + D S++A+QVK +YVKN+P+N S EK+K+LF+ HGEVTK+V+PP K+G KRDF
Sbjct: 274 KGSSSSSSDSSSSAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDF 333
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGK 350
GF+H+AERSSALKAVK +EKYEIDG+
Sbjct: 334 GFVHFAERSSALKAVKGSEKYEIDGQ 359
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++ S+E ++DL E G+V ++ L K +G + F FV F + A KA+
Sbjct: 293 IYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAK-AGHKRDFGFVHFAERSSALKAVKGS 351
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + S+++
Sbjct: 352 EKYEIDGQVLEVSMAK 367
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 170/264 (64%), Positives = 218/264 (82%), Gaps = 3/264 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK K +LLALPP GSEVFIGGLP+D +E+DL +LCE G++ EVRLMKDKE+ E+KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F K+ A++AI++LH KE KG+T+RCSLS+ K+RLF+GNVPK +EDE R +I+
Sbjct: 152 FAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +PSRNRGF FV YYN+ACADY++QK+ NFK+DG+ T+SWA+P
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 270 KS--TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGF 326
K + D S+AA+QVK +YVKN+P+N S EKIKE+F+ HGEVTKVV+PP K+G KRDFGF
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGF 331
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+H+AERSSALKAVK +EKYEIDG+
Sbjct: 332 VHFAERSSALKAVKGSEKYEIDGQ 355
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++AS+E ++++ E G+V +V L K +G + F FV F + A KA+
Sbjct: 289 IYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAK-AGNKRDFGFVHFAERSSALKAVKGS 347
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + S+++
Sbjct: 348 EKYEIDGQVLEVSMAK 363
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 170/264 (64%), Positives = 218/264 (82%), Gaps = 3/264 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK K +LLALPP GSEVFIGGLP+D +E+DL +LCE G++ EVRLMKDKE+ E+KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F K+ A++AI++LH KE KG+T+RCSLS+ K+RLF+GNVPK +EDE R +I+
Sbjct: 152 FAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +PSRNRGF FV YYN+ACADY++QK+ NFK+DG+ T+SWA+P
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 270 KS--TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGF 326
K + D S+AA+QVK +YVKN+P+N S EKIKE+F+ HGEVTKVV+PP K+G KRDFGF
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGF 331
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+H+AERSSALKAVK +EKYEIDG+
Sbjct: 332 VHFAERSSALKAVKGSEKYEIDGQ 355
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++AS+E ++++ E G+V +V L K +G + F FV F + A KA+
Sbjct: 289 IYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAK-AGNKRDFGFVHFAERSSALKAVKGS 347
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + S+++
Sbjct: 348 EKYEIDGQVLEVSMAK 363
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/264 (64%), Positives = 216/264 (81%), Gaps = 3/264 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK K +LLALPP GSEVFIGGLP+D +E+DL +LCE G++ EVRLMKDKE+ E+KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F K+ A+ AI++LH KE KG+T+RCSLS+ K+RLF+GNVPK +EDE R +I+
Sbjct: 152 FAFVTFTGKDGAQHAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +PSRNRGF FV YYN+ACADY++QK+ NFK+DG+ T+SWA+P
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 270 KS--TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGF 326
K + D S+AA+QVK +YVKN+P+N S EKIKE+F+ HGEVTKVV+PP K+G KRDFGF
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGF 331
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+H+AERSSALKAVK EKYEIDG+
Sbjct: 332 VHFAERSSALKAVKGNEKYEIDGQ 355
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++AS+E ++++ E G+V +V L K +G + F FV F + A KA+
Sbjct: 289 IYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAK-AGNKRDFGFVHFAERSSALKAVKGN 347
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + S+++
Sbjct: 348 EKYEIDGQVLEVSMAK 363
>gi|356539254|ref|XP_003538114.1| PREDICTED: APOBEC1 complementation factor-like [Glycine max]
Length = 505
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 156/263 (59%), Positives = 217/263 (82%), Gaps = 5/263 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDEK KHA+LL++PP+GSEV+IGG+P AS+EDL+ LCE IG+V EVR+MK K+S E+KG
Sbjct: 108 EDEKKKHAELLSIPPHGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKG 166
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
F FV+FRS E A KAI+EL++ E GK I+CS S+ K+RLFIGNVP++W ++ +K++ +
Sbjct: 167 FGFVTFRSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTE 226
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV +EL+KD +N + NRGF+F+ YYN+ACA+YSRQKM++ FKL N PT+SWADP
Sbjct: 227 IGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWADP 286
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+AASQVKA+YVKN+P N + E++K+LF+RHG++TKVV+PP KSG K GF+
Sbjct: 287 KNA--ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFV 344
Query: 328 HYAERSSALKAVKDTEKYEIDGK 350
H+AERS+A+KA+K+TE+YE++G+
Sbjct: 345 HFAERSNAMKALKNTERYELEGQ 367
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
V++ LPK+ ++E L+ L E G + +V L K E FV F + A KA+
Sbjct: 300 VYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNT 359
Query: 169 HSKELKGKTIRCSLSE 184
EL+G+ ++CSL++
Sbjct: 360 ERYELEGQLLQCSLAK 375
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 160/289 (55%), Positives = 223/289 (77%), Gaps = 7/289 (2%)
Query: 65 SAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLR 124
++ AN D + H +E K EDEK KHA+LLA PP+GSEV+IGG+P DASEEDL+
Sbjct: 1 ASNANGGDIQSSHQGDEAKVED---EDEKKKHAELLARPPHGSEVYIGGVPNDASEEDLK 57
Query: 125 DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184
D CE +G+V EVR+MK K+S ++KGFAFV+FRS + A KAI EL++ E KGK I+CS S+
Sbjct: 58 DFCESVGEVTEVRMMKGKDSSDNKGFAFVTFRSVDLATKAIGELNNTEFKGKRIKCSTSQ 117
Query: 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
K+RLF+ N+P++W E++ K + +VGPG ++L+K ++ S NRG++FV YYNNACA+
Sbjct: 118 AKHRLFLSNIPRSWGEEDLSKFVAEVGPGTTNVQLVKVSESSSNNRGYAFVEYYNNACAE 177
Query: 245 YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
YSRQKM++ FKL N P++SWADPK+ S+ +SQVKA+YVKN+P + +++K+LF+
Sbjct: 178 YSRQKMIDPKFKLGDNAPSVSWADPKNA--DSSTSSQVKAIYVKNLPKTVTQDQLKKLFE 235
Query: 305 RHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
RHG++TKVV+PP KSG K GF+H+AERSSA+KA+KDTEKYE++G+S
Sbjct: 236 RHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELNGQS 284
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LPK +++ L+ L E G + +V L K E FV F + A KA+ +
Sbjct: 216 IYVKNLPKTVTQDQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDT 275
Query: 169 HSKELKGKTIRCSLSETKN 187
EL G+++ C+L++ ++
Sbjct: 276 EKYELNGQSVECALAKPQS 294
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 154/263 (58%), Positives = 214/263 (81%), Gaps = 5/263 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDE+ K+ +LLA PP+GSEV+IGG+P DASEEDLRD CE +G+V EVR+M++K+S E++G
Sbjct: 92 EDEQKKYDELLARPPHGSEVYIGGIPNDASEEDLRDFCESVGEVTEVRIMREKDSSENRG 151
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+FRS + A AI EL++ E KGK I+CS S+ K+RLF+ N+P++W ED RK++ +
Sbjct: 152 FAFVTFRSVDLASTAIGELNNTEFKGKKIKCSTSQAKHRLFLSNIPRSWGEDGLRKIVAE 211
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV ++L+K+ ++ S NRG++F+ YYNNACA+YSRQKM++ FKL N P +SWADP
Sbjct: 212 VGPGVTNVQLVKE-KSSSNNRGYAFIEYYNNACAEYSRQKMMDPKFKLGDNAPAVSWADP 270
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+A+SQVKALYVKN+P + +++K+LF+RHG++TKVV+PP KSG K GF+
Sbjct: 271 KNA--DSSASSQVKALYVKNLPKTVTQDQLKKLFERHGKITKVVLPPAKSGQEKNRIGFV 328
Query: 328 HYAERSSALKAVKDTEKYEIDGK 350
H+AERSSA+KA+KDTEKYE+DG+
Sbjct: 329 HFAERSSAMKALKDTEKYELDGQ 351
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LPK +++ L+ L E G + +V L K E FV F + A KA+ +
Sbjct: 284 LYVKNLPKTVTQDQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDT 343
Query: 169 HSKELKGKTIRCSLSETKN 187
EL G+ + C+L++ ++
Sbjct: 344 EKYELDGQLVECALAKPQS 362
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 179/348 (51%), Positives = 249/348 (71%), Gaps = 29/348 (8%)
Query: 5 TEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGASEKDQ 64
T+ ++RVD + DN D E EE EE + EE +++EE + + S+K +
Sbjct: 26 TDSDERVDFDGDN------DQEETMEEEVEYEEVEEEEEEEEEEEEEEEEEETKLSDKTR 79
Query: 65 SAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLR 124
A+ + H E LLALPP+GSEV+IGG+P++ SEEDLR
Sbjct: 80 VADTKDEVEKKKHAE-------------------LLALPPHGSEVYIGGIPQNVSEEDLR 120
Query: 125 DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184
C+ +G+V EVR+MK KESGE+KG+AFV+F +KE A KAI+EL++ E KGK I+CS S+
Sbjct: 121 VFCQSVGEVSEVRIMKGKESGEAKGYAFVTFMTKELASKAIEELNNSEFKGKRIKCSTSQ 180
Query: 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
K++LFIGNVPK WTE + +KV+ ++GPGV +EL+KDPQN SRNRG++F+ YYN+ACA+
Sbjct: 181 VKHKLFIGNVPKYWTEGDMKKVVAEIGPGVICVELLKDPQNSSRNRGYAFIEYYNHACAE 240
Query: 245 YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
YSRQKM N+NFKL N PT+SWADP+++ S+A S VK++YVKN+P+N + +++KELF+
Sbjct: 241 YSRQKMSNSNFKLGSNAPTVSWADPRNS--ESSAISLVKSVYVKNLPENITQDRLKELFE 298
Query: 305 RHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
HG++TKVV+P KSG K FGF+H+AERSSA+KA+K+TEKYEIDG+
Sbjct: 299 HHGKITKVVLPSAKSGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQ 346
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
V++ LP++ +++ L++L E G + +V L K E F FV F + A KA+
Sbjct: 279 VYVKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHFAERSSAMKALKNT 338
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + CSL++
Sbjct: 339 EKYEIDGQLLECSLAK 354
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 156/263 (59%), Positives = 216/263 (82%), Gaps = 5/263 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDEK KHA+LL+LPP+GSEV+IGG+P AS+EDL+ LCE IG+V EVR+MK K+S E+KG
Sbjct: 112 EDEKRKHAELLSLPPHGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKG 170
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
F FV+F S E A KAI+EL++ E GK I+CS S+ K+RLFIGNVP++W ++ +K++ +
Sbjct: 171 FGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTE 230
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV +EL+KD +N + NRGF+F+ YYN+ACA+YSRQKM++ FKL N PT+SWADP
Sbjct: 231 IGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWADP 290
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+AASQVKA+YVKN+P N + E++K+LF+RHG++TKVV+PP KSG K GF+
Sbjct: 291 KNA--ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFV 348
Query: 328 HYAERSSALKAVKDTEKYEIDGK 350
H+AERS+A+KA+K+TE+YE++G+
Sbjct: 349 HFAERSNAMKALKNTERYELEGQ 371
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
V++ LPK+ ++E L+ L E G + +V L K E FV F + A KA+
Sbjct: 304 VYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNT 363
Query: 169 HSKELKGKTIRCSLSETK 186
EL+G+ + CSL++ +
Sbjct: 364 ERYELEGQLLECSLAKPQ 381
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 153/262 (58%), Positives = 212/262 (80%), Gaps = 5/262 (1%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+E+ HA+LLA PP+GSEV+IGG+P DASEEDLR CE +G+V EVRLMK K+S E+K F
Sbjct: 97 NERKNHAELLARPPHGSEVYIGGIPHDASEEDLRGFCESVGEVTEVRLMKGKDSNENKRF 156
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
AFV+FRS + A KAIDEL++ E KGK I+CS ++ K RLF+GN+P++W E++ RKV+ +V
Sbjct: 157 AFVTFRSVDLASKAIDELNNTEFKGKRIKCSTAQAKYRLFLGNIPRSWKEEDLRKVVAEV 216
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
GPGV ++L+KD + S N+GF+F+ YYN ACA+YSRQKM+N +FKL N PT+SWA+PK
Sbjct: 217 GPGVTAVQLVKDMKT-SNNKGFAFIDYYNTACAEYSRQKMVNPDFKLGDNAPTVSWAEPK 275
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIH 328
+ S+A+SQVKA+YVKN+P N + +++K+LF+ HG++TKVV+PP K G K GF+H
Sbjct: 276 NA--DSSASSQVKAIYVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVH 333
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
+AERSSA+KA+K+TE+YE+DG+
Sbjct: 334 FAERSSAMKALKNTERYELDGQ 355
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LPK+ +++ L+ L E G + +V L K E FV F + A KA+
Sbjct: 288 IYVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVHFAERSSAMKALKNT 347
Query: 169 HSKELKGKTIRCSLSETK 186
EL G+ + CSL++ +
Sbjct: 348 ERYELDGQVVECSLAKPQ 365
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 152/264 (57%), Positives = 218/264 (82%), Gaps = 7/264 (2%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E +K KHA+LLALPP+GSEV+IGG+P + SE+DLR C+ +G+V EVR+MK KE+ KG
Sbjct: 84 EADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KG 140
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AFV+F++KE A KA+ EL++ E KG+ I+CS S+ K+RLFIG+VPK WT ++ +KV+
Sbjct: 141 YAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAK 200
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV ++EL+KDPQ+ SRNRGF+F+ Y+N+ACA+YSRQKM N+NFKLD N +SWADP
Sbjct: 201 VGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADP 260
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
+++ S+++SQVKA+YVKN+P+N + ++KELF+ HG++TKV +PP K+G K +GF+
Sbjct: 261 RNS--ESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFV 318
Query: 328 HYAERSSALKAVKDTEKYEIDGKS 351
H+A+RSSA+KA+K+TEKYEI+G++
Sbjct: 319 HFADRSSAMKALKNTEKYEINGQT 342
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
V++ LP++ ++ L++L E G + +V L K E + FV F + A KA+
Sbjct: 274 VYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNT 333
Query: 169 HSKELKGKTIRCSLSETK 186
E+ G+T+ CSL++ +
Sbjct: 334 EKYEINGQTLECSLAKPQ 351
>gi|297816558|ref|XP_002876162.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322000|gb|EFH52421.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 146/259 (56%), Positives = 208/259 (80%), Gaps = 2/259 (0%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K +H +LLALP +GSEV++GG+P DA+E DL+ C+ IG+V EVR+M++KESG+ KG+AF
Sbjct: 77 KKRHVELLALPSHGSEVYLGGIPTDATEGDLKGFCQSIGEVTEVRIMREKESGDGKGYAF 136
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
V+FR+K+ A KAID L+S E +GK I+CS ++ K+RLF+GNVP+NWTE + +K +GP
Sbjct: 137 VTFRNKDLASKAIDTLNSTEFRGKRIKCSTTQAKHRLFLGNVPRNWTESDIKKAANRIGP 196
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GV+ +EL K+PQN RNRGF+F+ Y+N+ACA+YS+QKM N +FKLD N PT+SWA+ +S
Sbjct: 197 GVQIVELPKEPQNMGRNRGFAFIEYHNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 256
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD--FGFIHYA 330
++ASQVKALY+KN+P + + E++K LF+ HG++ KVV+PP K GK D +GF+HYA
Sbjct: 257 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYA 316
Query: 331 ERSSALKAVKDTEKYEIDG 349
ER+S ++A+K+TE+YEIDG
Sbjct: 317 ERTSVMRALKNTERYEIDG 335
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 144/259 (55%), Positives = 207/259 (79%), Gaps = 2/259 (0%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K +H +LLALPP+GSEV++GG+P DA+E DL+ C IG+V EVR+M++K+SG+ KG+AF
Sbjct: 78 KKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAF 137
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
V+FRSK+ A +AID L++ + +GK I+CS ++ K+RLF+GNVP+NW E + +K +GP
Sbjct: 138 VTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGP 197
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GV+ +EL K+PQN RNRGF+F+ YYN+ACA+YS+QKM N +FKLD N PT+SWA+ +S
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 257
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD--FGFIHYA 330
++ASQVKALY+KN+P + + E++K LF+ HG++ KVV+PP K GK D +GF+HYA
Sbjct: 258 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYA 317
Query: 331 ERSSALKAVKDTEKYEIDG 349
ER+S ++A+K+TE+YEIDG
Sbjct: 318 ERTSVMRALKNTERYEIDG 336
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 323 bits (828), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 149/260 (57%), Positives = 207/260 (79%), Gaps = 6/260 (2%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KDKHA+LL LPP+GSEV++GG+ DA+ EDL++LCEP+G+V EVR+M K ESKG+A
Sbjct: 167 DKDKHAELLGLPPHGSEVYLGGISNDATSEDLKELCEPVGEVVEVRIMPGKR--ESKGYA 224
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
F++F++K+ A KAI++L +K KGK IR S S+ KN+LF+GNVP +W+ D+ +K +E+VG
Sbjct: 225 FITFKTKDLALKAIEKLSNKTFKGKKIRVSSSQAKNKLFVGNVPNSWSHDDLKKAVEEVG 284
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV I+LIKDP+ RNRG+ FV YYNNACA+YSRQKM NFKLD N PT+SWADPK+
Sbjct: 285 PGVLKIDLIKDPRT-DRNRGYGFVEYYNNACAEYSRQKMSTPNFKLDTNAPTVSWADPKN 343
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
SA+ SQVK++YVKN+P N + ++K+LF+ HGE+TK+V+PP K G + +GF+H+
Sbjct: 344 --GDSASTSQVKSVYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHDNRYGFVHFK 401
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+R A+KA+K+TEKYE+DG+
Sbjct: 402 DRHMAMKALKNTEKYELDGQ 421
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 63 DQSAEANRNDDDTPHVE-EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
+ AE +R TP+ + + PT S + + A + V++ LPK+ ++
Sbjct: 312 NACAEYSRQKMSTPNFKLDTNAPTVSWADPKNGDSASTSQV----KSVYVKNLPKNVTQG 367
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181
L+ L E G++ ++ L K+ G + FV F+ + A KA+ EL G+ + CS
Sbjct: 368 QLKKLFEHHGEITKIVLPPSKD-GHDNRYGFVHFKDRHMAMKALKNTEKYELDGQLLDCS 426
Query: 182 LSE 184
L++
Sbjct: 427 LAK 429
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 323 bits (828), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 152/263 (57%), Positives = 210/263 (79%), Gaps = 13/263 (4%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDEK KHA+LL+LPP+GSEV+IGG+P AS+EDL+ LCE IG+V EVR+MK K+S E+KG
Sbjct: 112 EDEKRKHAELLSLPPHGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKG 170
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
F FV+F S E A KAI+EL++ E GK I+CS S+ K+RLFIGNVP++W ++ +K++ +
Sbjct: 171 FGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTE 230
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPG D +N + NRGF+F+ YYN+ACA+YSRQKM++ FKL N PT+SWADP
Sbjct: 231 IGPG--------DMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWADP 282
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+AASQVKA+YVKN+P N + E++K+LF+RHG++TKVV+PP KSG K GF+
Sbjct: 283 KNA--ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFV 340
Query: 328 HYAERSSALKAVKDTEKYEIDGK 350
H+AERS+A+KA+K+TE+YE++G+
Sbjct: 341 HFAERSNAMKALKNTERYELEGQ 363
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
V++ LPK+ ++E L+ L E G + +V L K E FV F + A KA+
Sbjct: 296 VYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNT 355
Query: 169 HSKELKGKTIRCSLSETK 186
EL+G+ + CSL++ +
Sbjct: 356 ERYELEGQLLECSLAKPQ 373
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 323 bits (827), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 249/355 (70%), Gaps = 23/355 (6%)
Query: 4 STEVED--RVDLEEDNYMEE-MDDDVEEQVEEDPEEEGG---DGNFEENDDDEEYDHSKA 57
S EV D R+D++ D E+ +DD+ + VEE+ ++ G D N +E +DE Y
Sbjct: 7 SPEVHDDERIDIDGDVEPEDVIDDETDGIVEEEKADQEGLDLDMNEDEGGEDEAYTTDHE 66
Query: 58 GASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKD 117
+ ++A A+ + SV D+ ++ LL+ PP+GSEVFIGG+ +D
Sbjct: 67 NGLQNGENASADLGE--------------SVDVDDDEETKSLLSRPPHGSEVFIGGVTRD 112
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
+E+DLR+LC P G++FEVR++KDKE+G +KG+AFV++ ++E A+KAI+ L + ELKG+
Sbjct: 113 TNEDDLRELCSPCGEIFEVRILKDKETGNNKGYAFVTYTNRETAEKAIETLANSELKGRK 172
Query: 178 IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+R S S+ K+RLFIGN+PK+W E K++ + GPGVE +EL+KDP+NP +NRGF+FV Y
Sbjct: 173 LRFSHSQAKHRLFIGNIPKSWDTPELEKILAEEGPGVEGVELLKDPRNPGKNRGFAFVEY 232
Query: 238 YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTE 297
YN+ACAD++R+ M ++F+L N PT+SWADP+ T AA SQ+K +YV+N+P+ + E
Sbjct: 233 YNHACADHARKLMSRSSFRLGNNVPTVSWADPR-TGAEPAATSQIKVVYVRNLPEAVTEE 291
Query: 298 KIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+++ LF+ HGE+TKVV+P K G KRDFGF+H+A+R+ ALKA++ TEKYE++G+
Sbjct: 292 QLRGLFEHHGEITKVVLPQSKPGQPKRDFGFVHFADRNDALKAIEKTEKYELEGR 346
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+H+ A + K S + R ++ P V + T + E +Q+ V
Sbjct: 231 EYYNHACADHARKLMSRSSFRLGNNVPTVSWADPRTGA----EPAATSQIKV-------V 279
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ LP+ +EE LR L E G++ +V L + K + F FV F + A KAI++
Sbjct: 280 YVRNLPEAVTEEQLRGLFEHHGEITKVVLPQSKPGQPKRDFGFVHFADRNDALKAIEKTE 339
Query: 170 SKELKGKTIRCSLSE 184
EL+G+ + SL++
Sbjct: 340 KYELEGRVLESSLAK 354
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 236/332 (71%), Gaps = 15/332 (4%)
Query: 21 EMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEE 80
++D DVE Q +D +E+ + D + A A E D A D VE+
Sbjct: 51 DLDIDVEAQEGDDSQEDQDIDVLNGDHDHGITEADLAAAEETDAHVGA-----DVAIVED 105
Query: 81 EEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMK 140
+E E + +K LL PP+GSE+F+GG+ +D +EEDLR LC GDV+EVRL+K
Sbjct: 106 KE-------EKDAEKSGDLLKRPPHGSEIFVGGITRDTTEEDLRTLCSSCGDVYEVRLLK 158
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTE 200
DK++G++KG+AFV+F ++E A+KAI+ L+ E+KG+ +R S S++K+RLF+GN+PK W +
Sbjct: 159 DKDTGQNKGYAFVTFLNEECAEKAIETLNDSEVKGRKLRFSQSQSKHRLFVGNIPKTWEK 218
Query: 201 DEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260
+E V+ + GPG++++EL+KDP+ P RNRGF FV YYN+ACA+++R++M ++F+L N
Sbjct: 219 EELESVLSEQGPGIQSVELLKDPKTPGRNRGFGFVEYYNHACAEHARREMSKSSFRLGTN 278
Query: 261 TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
PTISWADP+S PD S A SQVK +YV+N+PD+ + E++++LF+RHGE+ KVV+P K G
Sbjct: 279 APTISWADPRSGPDVS-AMSQVKVVYVRNLPDSVTEEQLQKLFERHGEIVKVVLPATKPG 337
Query: 321 --KRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
KRDFGF+H+++R+ ALKA++ TE YE++G+
Sbjct: 338 QAKRDFGFVHFSDRAQALKAIEKTEVYELEGR 369
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
V++ LP +EE L+ L E G++ +V L K + F FV F + A KAI++
Sbjct: 302 VYVRNLPDSVTEEQLQKLFERHGEIVKVVLPATKPGQAKRDFGFVHFSDRAQALKAIEKT 361
Query: 169 HSKELKGKTIRCSLSE 184
EL+G+ + SL++
Sbjct: 362 EVYELEGRILETSLAK 377
>gi|124360410|gb|ABD33357.2| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 742
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/263 (54%), Positives = 207/263 (78%), Gaps = 4/263 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+DEK KHA+LL+LP + SEV++GG+P DA EDL++ CE IG+V +VR+ K K++ E++G
Sbjct: 330 DDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRG 389
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV++RS E A KAI EL++ E K I+CS S+ K+RLFIGN+P++W E + +KV+ D
Sbjct: 390 FAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSD 449
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV +ELIKD +N S NRG++F+ Y+NN CA+YSRQKM + +FKL N PT++WA+P
Sbjct: 450 IGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEP 509
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+A+SQVK +YVKN+P N + E++K+LF+ HG++TKVV+PP K G K GF+
Sbjct: 510 KNA--DSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFV 567
Query: 328 HYAERSSALKAVKDTEKYEIDGK 350
H+AERS+A+KA+K+TEKY +DG+
Sbjct: 568 HFAERSNAMKALKNTEKYVLDGQ 590
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EV++ LPK+ ++E L+ L E G + +V L K E FV F + A KA+
Sbjct: 522 EVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKALKN 581
Query: 168 LHSKELKGKTIRCSLSETK 186
L G+ + CSL++ +
Sbjct: 582 TEKYVLDGQILECSLAKQQ 600
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/260 (55%), Positives = 208/260 (80%), Gaps = 6/260 (2%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 273 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 330
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+RS A++A+++TE+YE+DG+
Sbjct: 331 DRSMAMRALQNTERYELDGQ 350
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/260 (55%), Positives = 208/260 (80%), Gaps = 6/260 (2%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 273 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 330
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+RS A++A+++TE+YE+DG+
Sbjct: 331 DRSMAMRALQNTERYELDGQ 350
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/260 (55%), Positives = 208/260 (80%), Gaps = 6/260 (2%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 273 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 330
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+RS A++A+++TE+YE+DG+
Sbjct: 331 DRSMAMRALQNTERYELDGQ 350
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/260 (55%), Positives = 208/260 (80%), Gaps = 6/260 (2%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK+K+A+LLALPP+GSEV+ GG+ D S EDL+ LCEP+G+V EVR+MK K+ +S+G+A
Sbjct: 104 EKEKYAELLALPPHGSEVYFGGISSDISSEDLKKLCEPVGEVVEVRMMKGKD--DSRGYA 161
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K+ A +A+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRK +E+VG
Sbjct: 162 FVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG 221
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQKM FKLD N PT+SWADPK+
Sbjct: 222 PGVLKADLMKV-SSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKN 280
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+RHGE+TKVV+PP + G + +GF+H+
Sbjct: 281 --NDSASTSQVKSVYVKNLPKNVTQAQLKNLFERHGEITKVVLPPSRGGHDNRYGFVHFK 338
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+RS A++A+++TE+YE+ G+
Sbjct: 339 DRSMAMRALQNTERYELAGQ 358
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/260 (55%), Positives = 208/260 (80%), Gaps = 6/260 (2%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 273 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 330
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+RS A++A+++TE+YE+DG+
Sbjct: 331 DRSMAMRALQNTERYELDGQ 350
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/252 (59%), Positives = 200/252 (79%), Gaps = 5/252 (1%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P + + G+ +EEDLR LCEP+G++FEVRLMKDKE+ E+KGFAFV+F +K+ A+
Sbjct: 9 PRRARRYSWGVSPVTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 68
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
AI+ELH K+ KG+T+RCSLS+ K+RLF+GNVPK +E+E +I+ GPGV IE+ KD
Sbjct: 69 AIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL 128
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA----A 279
NPSRNRGF FV YYN+ACADY+RQK+ + +FK+DG+ T+SWA+PK + S+ A
Sbjct: 129 HNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAEPKGSSSSSSDSSSPA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKA 338
+QVK +YVKN+P+N S EK+K+LF+ HGEVTK+V+PP K+G KRDFGF+H+AERSSALKA
Sbjct: 189 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 248
Query: 339 VKDTEKYEIDGK 350
VK +EKYEIDG+
Sbjct: 249 VKGSEKYEIDGQ 260
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP++ S+E ++DL E G+V ++ ++ ++G + F FV F + A KA+
Sbjct: 194 IYVKNLPENVSKEKVKDLFEVHGEVTKI-VLPPAKAGHKRDFGFVHFAERSSALKAVKGS 252
Query: 169 HSKELKGKTIRCSLSE 184
E+ G+ + S+++
Sbjct: 253 EKYEIDGQVLEVSMAK 268
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 144/260 (55%), Positives = 208/260 (80%), Gaps = 6/260 (2%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 108 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 165
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 166 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 225
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 226 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 284
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 285 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 342
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+RS A++A+++TE+YE+DG+
Sbjct: 343 DRSMAMRALQNTERYELDGQ 362
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 144/260 (55%), Positives = 208/260 (80%), Gaps = 6/260 (2%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 109 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 166
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 167 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 226
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 227 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 285
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 286 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 343
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+RS A++A+++TE+YE+DG+
Sbjct: 344 DRSMAMRALQNTERYELDGQ 363
>gi|357501821|ref|XP_003621199.1| RNA-binding protein [Medicago truncatula]
gi|355496214|gb|AES77417.1| RNA-binding protein [Medicago truncatula]
Length = 782
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 144/263 (54%), Positives = 207/263 (78%), Gaps = 4/263 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+DEK KHA+LL+LP + SEV++GG+P DA EDL++ CE IG+V +VR+ K K++ E++G
Sbjct: 365 DDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRG 424
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV++RS E A KAI EL++ E K I+CS S+ K+RLFIGN+P++W E + +KV+ D
Sbjct: 425 FAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSD 484
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV +ELIKD +N S NRG++F+ Y+NN CA+YSRQKM + +FKL N PT++WA+P
Sbjct: 485 IGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEP 544
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+A+SQVK +YVKN+P N + E++K+LF+ HG++TKVV+PP K G K GF+
Sbjct: 545 KNA--DSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFV 602
Query: 328 HYAERSSALKAVKDTEKYEIDGK 350
H+AERS+A+KA+K+TEKY +DG+
Sbjct: 603 HFAERSNAMKALKNTEKYVLDGQ 625
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EV++ LPK+ ++E L+ L E G + +V L K E FV F + A KA+
Sbjct: 557 EVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKALKN 616
Query: 168 LHSKELKGKTIRCSLSETK 186
L G+ + CSL++ +
Sbjct: 617 TEKYVLDGQILECSLAKQQ 635
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 313 bits (803), Expect = 7e-83, Method: Composition-based stats.
Identities = 142/260 (54%), Positives = 206/260 (79%), Gaps = 6/260 (2%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 505 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 562
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A K + EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRK +E+VG
Sbjct: 563 FVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 622
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 623 PGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 681
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 682 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 739
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+RS A++A+++TE+YE+DG+
Sbjct: 740 DRSMAMRALQNTERYELDGQ 759
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 140/260 (53%), Positives = 208/260 (80%), Gaps = 6/260 (2%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK+ +A+LLALPP+GSEV++GG+ D S +DL+ LCEP+G+V EVR+MK K+ +S+G+A
Sbjct: 76 EKENYAELLALPPHGSEVYVGGISSDISSQDLKKLCEPVGEVVEVRMMKGKD--DSRGYA 133
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K+ A +A+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRK +E+VG
Sbjct: 134 FVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG 193
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQKM FKLD N PT+SWADPK+
Sbjct: 194 PGVLKADLMKV-SSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKN 252
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K+LF+ HG++TKVV+PP + G + +GF+H+
Sbjct: 253 --NDSASTSQVKSVYVKNLPKNVTQAELKKLFEHHGDITKVVLPPSRGGHDNRYGFVHFK 310
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+RS A++A+++TE+YE+ G+
Sbjct: 311 DRSMAMRALQNTERYELAGQ 330
>gi|242067347|ref|XP_002448950.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
gi|241934793|gb|EES07938.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
Length = 498
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 142/262 (54%), Positives = 205/262 (78%), Gaps = 6/262 (2%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK+KHA+LLALPP+G+EV++GGL D S EDL+ L E +G+V EVR+ + G++K
Sbjct: 87 ENEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKRLFESVGEVVEVRM---RGKGDNKA 143
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AF++FR+KE A KAI +L +K+LKGK I+ S S+ KNRLFIGNVP++WT D+F+ +E+
Sbjct: 144 YAFINFRTKEMALKAIRKLCNKDLKGKKIKVSSSQAKNRLFIGNVPRDWTPDDFKTAVEE 203
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV ++L+K P + RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWADP
Sbjct: 204 VGPGVLQVDLMKAPGS-GRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADP 262
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIH 328
K+ + + + +QVK+LYVKNIP + E++K+LF+ GE+TKVV+PP KSG + +GF+H
Sbjct: 263 KNA-NEATSTAQVKSLYVKNIPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVH 321
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
+ ERS A+KA+K+TE+YE+DG+
Sbjct: 322 FKERSMAMKALKNTERYELDGQ 343
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+ + A +++ S + D + P V + A +E AQ+ +L
Sbjct: 229 EYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADPKNA----NEATSTAQVKSL------- 277
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ +PK ++E L+ L E +G++ +V ++ +SG + FV F+ + A KA+
Sbjct: 278 YVKNIPKTVTQEQLKKLFEHVGEITKV-VIPPAKSGHENRYGFVHFKERSMAMKALKNTE 336
Query: 170 SKELKGKTIRCSLSE 184
EL G+ + CSL++
Sbjct: 337 RYELDGQLLDCSLAK 351
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 149/288 (51%), Positives = 200/288 (69%), Gaps = 54/288 (18%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDE KHA+LLALPP+GSEV++GG+P+D+SE+DLR CE IG+V EVR+M+ KES E+KG
Sbjct: 378 EDETKKHAELLALPPHGSEVYVGGIPQDSSEDDLRRFCESIGEVTEVRVMRSKESNENKG 437
Query: 150 FAFVSFRS-------------------------KEFAKKAIDELHSKELKGKTIRCSLSE 184
FAFV+FRS +
Sbjct: 438 FAFVTFRSVELASKAIDELNNTEFKGKKIKCSSS-------------------------Q 472
Query: 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
K+RLFIGNVP++W E++ +KV+ ++GPGV +EL+KD +N S NRGF+F+ YYN+ACA+
Sbjct: 473 AKHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAE 532
Query: 245 YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
YSRQKM+N FKLD N PT+SWADPK+ S+AASQVKA+YVKN+P N + E++K+LF
Sbjct: 533 YSRQKMMNPKFKLDDNAPTVSWADPKNA--DSSAASQVKAVYVKNLPKNVTQEQLKKLFD 590
Query: 305 RHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
HG++TKVV+PP KSG K GF+H++ERSSA+KA+K+TEKYE+DG+
Sbjct: 591 HHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTEKYELDGQ 638
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 52 YDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFI 111
Y+H+ A S + + DD+ P V + A + K V++
Sbjct: 526 YNHACAEYSRQKMMNPKFKLDDNAPTVSWADPKNADSSAASQVK------------AVYV 573
Query: 112 GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171
LPK+ ++E L+ L + G + +V L K E FV F + A KA+
Sbjct: 574 KNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTEKY 633
Query: 172 ELKGKTIRCSLSE 184
EL G+ + CSL++
Sbjct: 634 ELDGQVLECSLAK 646
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/288 (51%), Positives = 200/288 (69%), Gaps = 54/288 (18%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDE KHA+LLALPP+GSEV++GG+P+D+SE+DLR CE IG+V EVR+M+ KES E+KG
Sbjct: 422 EDETKKHAELLALPPHGSEVYVGGIPQDSSEDDLRRFCESIGEVTEVRVMRSKESNENKG 481
Query: 150 FAFVSFRS-------------------------KEFAKKAIDELHSKELKGKTIRCSLSE 184
FAFV+FRS +
Sbjct: 482 FAFVTFRSVELASKAIDELNNTEFKGKKIKCSSS-------------------------Q 516
Query: 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
K+RLFIGNVP++W E++ +KV+ ++GPGV +EL+KD +N S NRGF+F+ YYN+ACA+
Sbjct: 517 AKHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAE 576
Query: 245 YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
YSRQKM+N FKLD N PT+SWADPK+ S+AASQVKA+YVKN+P N + E++K+LF
Sbjct: 577 YSRQKMMNPKFKLDDNAPTVSWADPKNA--DSSAASQVKAVYVKNLPKNVTQEQLKKLFD 634
Query: 305 RHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
HG++TKVV+PP KSG K GF+H++ERSSA+KA+K+TEKYE+DG+
Sbjct: 635 HHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTEKYELDGQ 682
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 52 YDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFI 111
Y+H+ A S + + DD+ P V + A + K V++
Sbjct: 570 YNHACAEYSRQKMMNPKFKLDDNAPTVSWADPKNADSSAASQVK------------AVYV 617
Query: 112 GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171
LPK+ ++E L+ L + G + +V L K E FV F + A KA+
Sbjct: 618 KNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTEKY 677
Query: 172 ELKGKTIRCSLSE 184
EL G+ + CSL++
Sbjct: 678 ELDGQVLECSLAK 690
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/284 (50%), Positives = 208/284 (73%), Gaps = 23/284 (8%)
Query: 68 ANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLC 127
++ D EK KHA+LLALPP+GSEV++GG+ D S EDL+ LC
Sbjct: 88 VHQKD-----------------VTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLC 130
Query: 128 EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
EP+G+V EVR+M+ K+ +S+G+AFV+FR+K A K + EL++ +LKGK IR S S+ KN
Sbjct: 131 EPVGEVVEVRMMRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKN 188
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIGNVP +WT+D+FRK +E+VGPGV +L+K + +RNRG+ FV YYN+ACA+Y+R
Sbjct: 189 KLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYAR 247
Query: 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
Q+M + FKLD N PT+SWADPK+ + S + SQVK++YVKN+P N + ++K LF+ HG
Sbjct: 248 QEMSSPTFKLDSNAPTVSWADPKN--NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHG 305
Query: 308 EVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDTEKYEIDGK 350
E+ KVV+PP + G + +GF+H+ +RS A++A+++TE+YE+DG+
Sbjct: 306 EIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQ 349
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 142/284 (50%), Positives = 208/284 (73%), Gaps = 23/284 (8%)
Query: 68 ANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLC 127
++ D EK KHA+LLALPP+GSEV++GG+ D S EDL+ LC
Sbjct: 467 VHQKD-----------------VTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLC 509
Query: 128 EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
EP+G+V EVR+M+ K+ +S+G+AFV+FR+K A K + EL++ +LKGK IR S S+ KN
Sbjct: 510 EPVGEVVEVRMMRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKN 567
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIGNVP +WT+D+FRK +E+VGPGV +L+K + +RNRG+ FV YYN+ACA+Y+R
Sbjct: 568 KLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYAR 626
Query: 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
Q+M + FKLD N PT+SWADPK+ + S + SQVK++YVKN+P N + ++K LF+ HG
Sbjct: 627 QEMSSPTFKLDSNAPTVSWADPKN--NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHG 684
Query: 308 EVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDTEKYEIDGK 350
E+ KVV+PP + G + +GF+H+ +RS A++A+++TE+YE+DG+
Sbjct: 685 EIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQ 728
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 146/265 (55%), Positives = 202/265 (76%), Gaps = 9/265 (3%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDEK+ HA+LL+LPP+GSEV++GG+ D S +DLR LCE IG+V EVR+ +SG K
Sbjct: 80 EDEKESHAELLSLPPHGSEVYVGGISSDVSSDDLRKLCESIGEVVEVRM--PGKSG--KL 135
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AFV+FR+KE A KAI +L++K+LKGK IR S S+ KNRLFIGN+P WTED F++ +E+
Sbjct: 136 YAFVNFRTKELAVKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNIPYKWTEDIFKEAVEE 195
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV + L+K P++ + N+G+ F+ YYN ACA+Y+++KM FKLD N P +SWAD
Sbjct: 196 VGPGVVKVNLVKAPRSDT-NKGYGFIEYYNQACAEYAKKKMSTPEFKLDKNAPNVSWADT 254
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIH 328
K+ SA+ SQVK+LY+KN+P + E++K LF+ GEVTKVV+PP K+G + +GF+H
Sbjct: 255 KNG-GESASTSQVKSLYIKNLPKTVTQEQLKRLFEHLGEVTKVVIPPAKAGHENRYGFVH 313
Query: 329 YAERSSALKAVKDTEKYEIDGKSHL 353
+ ERS A+KA+KDTE+YE+DG HL
Sbjct: 314 FKERSMAMKALKDTERYELDG--HL 336
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+ + A ++K S + D + P+V + T + GE + L
Sbjct: 221 EYYNQACAEYAKKKMSTPEFKLDKNAPNVSWAD--TKNGGESASTSQVKSL--------- 269
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
+I LPK ++E L+ L E +G+V +V ++ ++G + FV F+ + A KA+ +
Sbjct: 270 YIKNLPKTVTQEQLKRLFEHLGEVTKV-VIPPAKAGHENRYGFVHFKERSMAMKALKDTE 328
Query: 170 SKELKGKTIRCSLSE 184
EL G + CSL++
Sbjct: 329 RYELDGHLLDCSLAK 343
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/262 (52%), Positives = 200/262 (76%), Gaps = 6/262 (2%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK+KHA+LLALPP+G+EV++GG+ D S EDL+ L E +G+V EVR+ + G+++
Sbjct: 87 ENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVVEVRM---RGKGDNRT 143
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AF++FR+K A KAI L +K+LKGK I+ S S+ KNRLFIGNVP +WT D+F+ +E+
Sbjct: 144 YAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEE 203
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV +EL+K P RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWADP
Sbjct: 204 VGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADP 262
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIH 328
K+ + + + +QVK+LYVKN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H
Sbjct: 263 KNA-NEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVH 321
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
+ ER A+KA+K+TE+YE+DG+
Sbjct: 322 FKERYMAMKALKNTERYELDGQ 343
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+ + A +++ S + D + P V + A +E AQ+ +L
Sbjct: 229 EYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADPKNA----NEATSTAQVKSL------- 277
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ LPK ++E L+ L E +G++ +V ++ +SG + FV F+ + A KA+
Sbjct: 278 YVKNLPKTVTQEQLKKLFEHVGEITKV-VVPPAKSGHENRYGFVHFKERYMAMKALKNTE 336
Query: 170 SKELKGKTIRCSLSE 184
EL G+ + CSL++
Sbjct: 337 RYELDGQLLDCSLAK 351
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/262 (52%), Positives = 200/262 (76%), Gaps = 6/262 (2%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK+KHA+LLALPP+G+EV++GG+ D S EDL+ L E +G+V EVR+ + G+++
Sbjct: 87 ENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVVEVRM---RGKGDNRT 143
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AF++FR+K A KAI L +K+LKGK I+ S S+ KNRLFIGNVP +WT D+F+ +E+
Sbjct: 144 YAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEE 203
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV +EL+K P RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWADP
Sbjct: 204 VGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADP 262
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIH 328
K+ + + + +QVK+LYVKN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H
Sbjct: 263 KNA-NEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVH 321
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
+ ER A+KA+K+TE+YE+DG+
Sbjct: 322 FKERYMAMKALKNTERYELDGQ 343
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+ + A +++ S + D + P V + A +E AQ+ +L
Sbjct: 229 EYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADPKNA----NEATSTAQVKSL------- 277
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ LPK ++E L+ L E +G++ +V ++ +SG + FV F+ + A KA+
Sbjct: 278 YVKNLPKTVTQEQLKKLFEHVGEITKV-VVPPAKSGHENRYGFVHFKERYMAMKALKNTE 336
Query: 170 SKELKGKTIRCSLSE 184
EL G+ + CSL++
Sbjct: 337 RYELDGQLLDCSLAK 351
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/262 (52%), Positives = 200/262 (76%), Gaps = 6/262 (2%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK+KHA+LLALPP+G+EV++GG+ D S EDL+ L E +G+V EVR+ + G+++
Sbjct: 86 ENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVVEVRM---RGKGDNRT 142
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AF++FR+K A KAI L +K+LKGK I+ S S+ KNRLFIGNVP +WT D+F+ +E+
Sbjct: 143 YAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEE 202
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV +EL+K P RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWADP
Sbjct: 203 VGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADP 261
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIH 328
K+ + + + +QVK+LYVKN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H
Sbjct: 262 KNA-NEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVH 320
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
+ ER A+KA+K+TE+YE+DG+
Sbjct: 321 FKERYMAMKALKNTERYELDGQ 342
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+ + A +++ S + D + P V + A +E AQ+ +L
Sbjct: 228 EYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADPKNA----NEATSTAQVKSL------- 276
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ LPK ++E L+ L E +G++ +V ++ +SG + FV F+ + A KA+
Sbjct: 277 YVKNLPKTVTQEQLKKLFEHVGEITKV-VVPPAKSGHENRYGFVHFKERYMAMKALKNTE 335
Query: 170 SKELKGKTIRCSLSE 184
EL G+ + CSL++
Sbjct: 336 RYELDGQLLDCSLAK 350
>gi|238006198|gb|ACR34134.1| unknown [Zea mays]
gi|413924828|gb|AFW64760.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 499
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 200/261 (76%), Gaps = 6/261 (2%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+EK+KHA+LLALPP+G+EV++GGL D S EDL+ L E +G+V EVR+ + G++K +
Sbjct: 87 NEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGEVAEVRM---RGKGDNKTY 143
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
AF++FR+KE A KAI +L +K+LKGK I+ S S+ KNRLFIGNVP +WT D+F+ +E+V
Sbjct: 144 AFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAVEEV 203
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
GPGV ++L+K P + RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWAD K
Sbjct: 204 GPGVLKVDLMKAPGS-GRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHK 262
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHY 329
+ + + SQVK+LYVKN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H+
Sbjct: 263 NA-SEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHF 321
Query: 330 AERSSALKAVKDTEKYEIDGK 350
ERS +KA+K+TE+YE+DG+
Sbjct: 322 KERSMVMKALKNTERYELDGQ 342
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LPK ++E L+ L E +G++ +V ++ +SG + FV F+ + KA+
Sbjct: 276 LYVKNLPKTVTQEQLKKLFEHVGEITKV-VIPPAKSGHENRYGFVHFKERSMVMKALKNT 334
Query: 169 HSKELKGKTIRCS 181
EL G+ + CS
Sbjct: 335 ERYELDGQLLDCS 347
>gi|413924827|gb|AFW64759.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 509
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 200/261 (76%), Gaps = 6/261 (2%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+EK+KHA+LLALPP+G+EV++GGL D S EDL+ L E +G+V EVR+ + G++K +
Sbjct: 97 NEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGEVAEVRM---RGKGDNKTY 153
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
AF++FR+KE A KAI +L +K+LKGK I+ S S+ KNRLFIGNVP +WT D+F+ +E+V
Sbjct: 154 AFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAVEEV 213
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
GPGV ++L+K P + RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWAD K
Sbjct: 214 GPGVLKVDLMKAPGS-GRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHK 272
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHY 329
+ + + SQVK+LYVKN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H+
Sbjct: 273 NA-SEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHF 331
Query: 330 AERSSALKAVKDTEKYEIDGK 350
ERS +KA+K+TE+YE+DG+
Sbjct: 332 KERSMVMKALKNTERYELDGQ 352
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+ + A +++ S + D + P V + AS E +Q+ +L
Sbjct: 238 EYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNAS----EATSTSQVKSL------- 286
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ LPK ++E L+ L E +G++ +V ++ +SG + FV F+ + KA+
Sbjct: 287 YVKNLPKTVTQEQLKKLFEHVGEITKV-VIPPAKSGHENRYGFVHFKERSMVMKALKNTE 345
Query: 170 SKELKGKTIRCS 181
EL G+ + CS
Sbjct: 346 RYELDGQLLDCS 357
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 138/262 (52%), Positives = 197/262 (75%), Gaps = 7/262 (2%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E K H +LLALPP+GSEV++GG+ D S +DL+ LCE +G+V EVR+ +SG +
Sbjct: 79 EGGKGSHDELLALPPHGSEVYVGGIASDVSSDDLKKLCESVGEVVEVRM--PGKSG--RL 134
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AFV+FR+KE A KAI +L++K+LKGK IR S S+ KNRLFIGN+P NWTE+EF+K E+
Sbjct: 135 YAFVNFRTKELASKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNIPYNWTENEFKKAAEE 194
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV + L+K P + + N+G+ F+ YYN ACA+Y+++ M FKLD N P +SWAD
Sbjct: 195 VGPGVLKVNLVKAPHSDT-NKGYGFIEYYNQACAEYAKKMMSTPEFKLDKNAPNVSWADT 253
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIH 328
K+ SA+ +QVK+LYVKN+P + E++K+LF+ GEVTKVV+PP K+G + +GF+H
Sbjct: 254 KNG-GESASTAQVKSLYVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHENRYGFVH 312
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
+ ERS A+KA++DTE++E+DG+
Sbjct: 313 FKERSMAMKALEDTERFELDGQ 334
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+ + A ++K S + D + P+V + T + GE AQ+ +L
Sbjct: 220 EYYNQACAEYAKKMMSTPEFKLDKNAPNVSWAD--TKNGGESAST--AQVKSL------- 268
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ LPK ++E L+ L E +G+V +V + K E++ + FV F+ + A KA+++
Sbjct: 269 YVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHENR-YGFVHFKERSMAMKALEDTE 327
Query: 170 SKELKGKTIRCSLSE 184
EL G+ + CSL++
Sbjct: 328 RFELDGQLLDCSLAK 342
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 132/260 (50%), Positives = 195/260 (75%), Gaps = 7/260 (2%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLC-EPIGDVFEVRLMKDKESGESKGFA 151
K KHA+LLALPP+GSEV++GG+ D S EDL+ LC V VR+M+ K+ +S+G+A
Sbjct: 152 KGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVVRMMRGKD--DSRGYA 209
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A K + EL++ +LK IR S S+ KN+LFIGNVP +WT+D+FRK +E+VG
Sbjct: 210 FVNFRTKGLALKVVKELNNAKLK-VWIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 268
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 269 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 327
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
D ++ + VK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 328 N-DSASTSQVVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 386
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+RS A++A+++TE+YE+DG+
Sbjct: 387 DRSMAMRALQNTERYELDGQ 406
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 181/253 (71%), Gaps = 10/253 (3%)
Query: 98 QLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS 157
+LLA PP+G+EVF+G LP++ ++EDL LCE G+VF+V + ++ E +AFV+F +
Sbjct: 120 ELLARPPHGTEVFVGNLPRNITKEDLTSLCEQHGEVFDVIIKREASKLE---YAFVTFTT 176
Query: 158 KEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
KE AKKAI+ L+ E K K +R S S+ KNRLF+GN+P N E+E K++ + GPG + +
Sbjct: 177 KESAKKAIETLNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQGPGYQHL 236
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
ELIKDP++ +RNRGF+FV YYN CA+ + + M ++ F+LD T+ WA +
Sbjct: 237 ELIKDPKDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWAT-----SQRS 291
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSA 335
++ +VK++YV+N+P+N + E+++ELF RHGEVTKVV+ K G KRDFGF+HYA+ SSA
Sbjct: 292 SSEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSA 351
Query: 336 LKAVKDTEKYEID 348
+KA++ TEKY ++
Sbjct: 352 MKAIEKTEKYTLE 364
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
V++ LP++ +EE LR+L G+V +V L++ K + F FV + A KAI++
Sbjct: 299 VYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAMKAIEKT 358
Query: 169 HSKELKGKTIRCSLS 183
L+ + + SL+
Sbjct: 359 EKYTLEDRELSVSLA 373
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 166/214 (77%), Gaps = 6/214 (2%)
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN 197
+M+ K+ +S+G+AFV+FR+K A K + EL++ +LKGK IR S S+ KN+LFIGNVP +
Sbjct: 1 MMRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHS 58
Query: 198 WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257
WT+D+FRK +E+VGPGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKL
Sbjct: 59 WTDDDFRKAVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKL 117
Query: 258 DGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317
D N PT+SWADPK+ + S + SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP
Sbjct: 118 DSNAPTVSWADPKN--NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPS 175
Query: 318 KSGKRD-FGFIHYAERSSALKAVKDTEKYEIDGK 350
+ G + +GF+H+ +RS A++A+++TE+YE+DG+
Sbjct: 176 RGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQ 209
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+++FIG +P +++D R E +G V + LMK + ++G+ FV + + A+ A
Sbjct: 48 NKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYAR 107
Query: 166 DELHSKELK--GKTIRCSLSETKNR----------LFIGNVPKNWTEDEFRKVIEDVGPG 213
E+ S K S ++ KN +++ N+PKN T+ + +++ E G
Sbjct: 108 QEMSSPTFKLDSNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHG-- 165
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
E +++ P + + FV + + + A + Q ++LDG S A P +
Sbjct: 166 -EIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQN--TERYELDGQVLDCSLAKPPAA 221
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 159/232 (68%), Gaps = 5/232 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+EVF+GG+ ++ +EE+L+DL IG+V +VR+MKD+ +GE+KG+ FVSF +K K+A+
Sbjct: 112 NEVFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVV 171
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
+ ++KE KGK +R SE K ++FIGN+PK +D+ ++ D G+ ++ + DP N
Sbjct: 172 QFNNKEFKGKNLRVKFSENKRKIFIGNLPKELKKDQLLLILADHSDGITNVDFLTDPDNS 231
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
SRNRGF+F+ Y + A+ +R++ NFK+ T++WADP PD + +QV+ LY
Sbjct: 232 SRNRGFAFIEYTDYYQAEKARKEFSQPNFKIGNCNVTVNWADPIQEPDET-IMNQVRVLY 290
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMP---PGKSGKRDFGFIHYAERSSA 335
++N+PD+ S E++++LF+ +G + KV++P PG+ +RDFGF+H+A R A
Sbjct: 291 IRNLPDSKSEEQVRKLFEEYGVIEKVIIPNNLPGQQ-RRDFGFVHFANRDEA 341
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
N +F+G + +N TE+E + + +G V+ + ++KD N N+G+ FV + N + +
Sbjct: 112 NEVFVGGIARNTTEEELQDLFSTIG-NVKQVRIMKDRSN-GENKGYGFVSFANKSNCKEA 169
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ N FK G + +++ K + +++ N+P +++ + H
Sbjct: 170 VVQFNNKEFK--GKNLRVKFSENK------------RKIFIGNLPKELKKDQLLLILADH 215
Query: 307 GE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKAVKD 341
+ +T V P S R F FI Y + A KA K+
Sbjct: 216 SDGITNVDFLTDPDNSSRNRGFAFIEYTDYYQAEKARKE 254
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKE-SGESKGFAFVSFRSKEFAK 162
N ++FIG LPK+ ++ L + D + V + D + S ++GFAF+ + A+
Sbjct: 190 NKRKIFIGNLPKELKKDQLLLILADHSDGITNVDFLTDPDNSSRNRGFAFIEYTDYYQAE 249
Query: 163 KAIDELHSKELKGKTIRCSLS----------ETKNR---LFIGNVPKNWTEDEFRKVIED 209
KA E K +++ N+ L+I N+P + +E++ RK+ E+
Sbjct: 250 KARKEFSQPNFKIGNCNVTVNWADPIQEPDETIMNQVRVLYIRNLPDSKSEEQVRKLFEE 309
Query: 210 VGPGVETIELIKDPQN--PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267
G IE + P N + R F FV + N A+ + + + G ++S+A
Sbjct: 310 YG----VIEKVIIPNNLPGQQRRDFGFVHFANRDEAEATLARHHDTPITYQGRPLSLSFA 365
Query: 268 DP 269
P
Sbjct: 366 KP 367
>gi|384250281|gb|EIE23761.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 374
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 166/248 (66%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE-SKGFAFVSFRSKEFA 161
PP+G+EVF+GG+P+ A+E+ L+ E +G+V V L+KD ++ E ++GF FV F+++ A
Sbjct: 73 PPHGTEVFVGGIPRSATEDQLKVFAEAMGEVHAVVLLKDPQNNEQNRGFGFVKFKTRAAA 132
Query: 162 KKAIDELHSKELK---GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
A+++L K+L G+ +R + S++K++L++GN+P++ ++D + ++ V GVE IE
Sbjct: 133 TDALEKLAGKQLADFPGQNLRVAPSQSKHKLYVGNIPRDLSKDTLKAELDAVVKGVEVIE 192
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
L+ + P NRGF+F+ +YN+ACA ++ + + + G + +++A+PK
Sbjct: 193 LLMSKEYPGNNRGFAFIEFYNHACAQLAKNALSAPTYTMHGRSLNVAYAEPKGA--DQVP 250
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSAL 336
QVK++YV N+P + + K+KELF++ GEVTKVV+PP + K R+FGF+H++ERS
Sbjct: 251 TQQVKSVYVGNLPASANEAKLKELFEQFGEVTKVVIPPSRPDKPNREFGFVHFSERSVVE 310
Query: 337 KAVKDTEK 344
K V+D EK
Sbjct: 311 KLVQDAEK 318
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 163/236 (69%), Gaps = 5/236 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+EVF+GG+ K+ +E+DL+ + +G V ++RLMK+K +GESKG+AF++F K + A++
Sbjct: 47 NEVFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQMAVE 106
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
++ +KELKGK++R SE + +LF+GN+PK + +++ +++ G+ +++ + DP NP
Sbjct: 107 KISNKELKGKSLRVKYSENRRKLFLGNLPKEFNKEQLLEILNKHTEGITSMDFLMDPDNP 166
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+RNRGF+FV + + AD +R++ + +F++ + T++WADP PD + V+ LY
Sbjct: 167 TRNRGFAFVEFSDYYLADKARKEFASPSFRIGSSCVTVNWADPVQEPDEDVMKN-VRVLY 225
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMP---PGKSGKRDFGFIHYAERSSALKAV 339
V+N+P+ ++E +K++F+ G + KV++P PG+ +RDFGF+H+ R +A +A+
Sbjct: 226 VRNLPEQRNSEDLKKVFEEFGTIEKVIIPVNIPGQQ-RRDFGFVHFESREAAEEAL 280
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 153/249 (61%), Gaps = 4/249 (1%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVF+GGL KD +E DL +G++FE+RLMKD +GESKG+AFV F S +FAK
Sbjct: 397 PPRGSEVFVGGLGKDVNEADLYSAFANVGEIFEIRLMKDATTGESKGYAFVRFTSPKFAK 456
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIK 221
A+ ++ LKG+ + S LF+G++ K+W +D+ + + D GV TI L+K
Sbjct: 457 LAVQQVDGAVLKGRKVGVVHSNDNQTLFLGHLDKDWRQDDLDQHLRDAKIKGVTTITLMK 516
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
D N +RNRGF+FV + ++ A + K++ F+L + WA+P + P S+
Sbjct: 517 DTTNMARNRGFAFVEFSSHEEAAKAHAKIMKPGFRLADVDVKVDWAEPLNEPSEE-VMSK 575
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-KSGKR-DFGFIHYAERSSALKAV 339
VK++YV N+P + + + I+ LF GE+ ++V+ KS +R DF F++Y ERS+AL A+
Sbjct: 576 VKSIYVCNLPVDVNDDLIRSLFAEFGEIERIVLSKNLKSARRDDFAFVNYTERSAALAAI 635
Query: 340 KDTEKYEID 348
Y++D
Sbjct: 636 DARHGYKVD 644
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 159/263 (60%), Gaps = 17/263 (6%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE---------VRLMKDKESGESKGFAFV 153
PP GSEVF+GGL +DA+E+D+R++ IGD++E +RLM+D ++G SKG+AFV
Sbjct: 253 PPKGSEVFVGGLHRDATEDDVREVFAKIGDIYEASTIFPPARLRLMRDPKTGASKGYAFV 312
Query: 154 SFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-P 212
+ FA+ A D+L + G+ + +S+ LF+G++ ++W+ ++ +++ G
Sbjct: 313 RYMEPTFAELAADQLSGYLIMGRPVGVLVSQDNQSLFVGHISQDWSLEQLEAHLKEAGIR 372
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GV+ I DP NP+RNRGF F+ + ++ A + KM A+F+L G + WA+P +
Sbjct: 373 GVDHIIFQHDPMNPTRNRGFVFIEFKSHHEAARAHGKMTRADFRLSGQKVRVDWAEPLNE 432
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIH 328
P SQVK++YV N+P E I LF +G++ ++V +P + ++DF F++
Sbjct: 433 PGED-VMSQVKSIYVANLPLEVDNELITTLFGEYGKIERIVLSKNLPTAR--RKDFAFVN 489
Query: 329 YAERSSALKAVKDTEKYEIDGKS 351
Y ER++ALKA+ +E+ G++
Sbjct: 490 YEERANALKAIDGKHGFEVQGRT 512
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ LP + E + L G + + L K+ + K FAFV++ + A KAID
Sbjct: 444 IYVANLPLEVDNELITTLFGEYGKIERIVLSKNLPTARRKDFAFVNYEERANALKAIDGK 503
Query: 169 HSKELKGKTIRCSLSE 184
H E++G+T++ +L++
Sbjct: 504 HGFEVQGRTLQVTLAK 519
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 196/354 (55%), Gaps = 41/354 (11%)
Query: 14 EEDNYMEE--MDDDVEEQVEEDPEEE----GGDGNFEENDDDEEYDHSKAGASEKDQSAE 67
E++ Y+EE + DD + + P E GG G + D E SE D+
Sbjct: 4 EQEQYVEEAALVDDADMGEPQIPANEIENGGGSGGVDPPADGEP-------KSEGDEPKP 56
Query: 68 ANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ------------LLALPPNGSEVFIGGLP 115
+ DD V E+E TA EDE+ ++ + ++LPP+G+EVFI +P
Sbjct: 57 QEQAPDD---VREQELATA---EDERQRNQEHEEQQGAGDSEDPMSLPPHGTEVFISKVP 110
Query: 116 KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK- 174
++A++ +R CE G+VF +R+ KD+ES +KG+ F F+++E A+KA+ L +E+K
Sbjct: 111 REATDAQVRAFCEMAGEVFALRIPKDRESNTNKGYCFCVFKARESAEKAMTILEGREVKE 170
Query: 175 --GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 232
G+ + S KN+L+IG +P++ T +E +++ G+E IEL+ D + ++ RGF
Sbjct: 171 FPGRRVNVVPSIVKNKLYIGQMPRDITREELEVLLKAEVVGLEKIELMMDKET-NQARGF 229
Query: 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPD 292
F+ +YN+A A + +K+ F+L G+ + WADPK +VK++YV N+P+
Sbjct: 230 GFIAFYNSAAATLALRKLSRPEFRLRGHQVQVMWADPKR---DEIGTEKVKSIYVGNLPE 286
Query: 293 NTSTEKIKELFQRHGEVTKVV---MPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
+ ++ +F ++G V +V MP + R++ FI+Y +RSSAL+AV + E
Sbjct: 287 QYTENDLRAIFSQYGTVERVTLLYMPDDPTKLRNYTFINYTDRSSALRAVSEAE 340
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 156/250 (62%), Gaps = 8/250 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A PP G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F SKE
Sbjct: 156 AQPPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEA 215
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 216 AQEAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVIL 275
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
PQ+ S+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 276 YLQPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMA 335
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ ++ + E +++ F +G + +V +D+ FIH+ ER A+KA+
Sbjct: 336 -KVKVLFVRNLANSVTEEILEKAFSEYGNLERV------KKLKDYAFIHFEERDGAVKAL 388
Query: 340 KDTEKYEIDG 349
++ E++G
Sbjct: 389 EELNGKELEG 398
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F S++ A
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ EL+ E++ GK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 224 NAVRELNDYEIRNGKKIGVTISFNNHRLFVGNIPKNRDRDELLEEFAKHAPGLVEVIIYS 283
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ + WADP+ PD S+
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQ-TMSK 342
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ +TS EK+KE F++ G V +V +D+ F+H+ +R +A+KA+KD
Sbjct: 343 VKVLYVRNLTQDTSEEKLKESFEQFGRVERV------KKIKDYAFVHFEDRDNAVKAMKD 396
Query: 342 TEKYEIDG 349
+ E+ G
Sbjct: 397 LDGKEVGG 404
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G V V+ +KD +AFV F ++ A KA+ +L
Sbjct: 346 LYVRNLTQDTSEEKLKESFEQFGRVERVKKIKD--------YAFVHFEDRDNAVKAMKDL 397
Query: 169 HSKELKGKTIRCSLSE 184
KE+ G I SL++
Sbjct: 398 DGKEVGGSNIEVSLAK 413
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 155/248 (62%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F SKE A+
Sbjct: 162 PPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 221
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 222 EAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYL 281
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
PQ+ S+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 282 QPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMA-K 340
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ ++ + E +++ F +G + +V +D+ FIH+ ER A+KA+++
Sbjct: 341 VKVLFVRNLANSVTEEILEKSFSEYGNLERV------KKLKDYAFIHFEERDGAVKALEE 394
Query: 342 TEKYEIDG 349
E++G
Sbjct: 395 MNGKELEG 402
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 151/252 (59%), Gaps = 9/252 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL+ E+ KGK I ++S +RLF+GN+PKN D+ + PG+ + +
Sbjct: 219 QAVRELNDYEIRKGKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYS 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYVKN+ + S EK+KE F+++G + +V +D+ F+H+ ER +A+KA+ +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKESFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMNE 391
Query: 342 TEKYEIDGKSHL 353
EI G SH+
Sbjct: 392 LNGKEIGG-SHI 402
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G++ V+ +KD +AFV F ++ A KA++EL
Sbjct: 341 LYVKNLTQDCSEEKLKESFEQYGNIERVKKIKD--------YAFVHFEERDNAVKAMNEL 392
Query: 169 HSKELKGKTIRCSLSE 184
+ KE+ G I SL++
Sbjct: 393 NGKEIGGSHIEVSLAK 408
>gi|388509780|gb|AFK42956.1| unknown [Lotus japonicus]
Length = 232
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/102 (77%), Positives = 96/102 (94%), Gaps = 2/102 (1%)
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
M +++FKL GNTPT++WADPK++PDHSA+ SQVKALYVKNIP+N +T+++KELF+RHGEV
Sbjct: 1 MSSSSFKLYGNTPTVTWADPKNSPDHSAS-SQVKALYVKNIPENVTTDQLKELFRRHGEV 59
Query: 310 TKVVMPPGK-SGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
TKVVMPPGK GKRDFGFIH+AERSSALKAVK+TEKYEIDG+
Sbjct: 60 TKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQ 101
>gi|303272115|ref|XP_003055419.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463393|gb|EEH60671.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 23/259 (8%)
Query: 99 LLALPPNGSEVFIGGLPKDASEEDLRDLC----EPIGDVFEVRLMKDKESGESKGFAFVS 154
LL P + E+F+GG+PK ASE D+R C E + V+L+ D +G+++G+AFV+
Sbjct: 3 LLKKPAHSCELFLGGIPKSASEADVRAFCDDGAEGVASPSSVQLVIDTATGQNRGYAFVA 62
Query: 155 FRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-G 213
+ S+E A A ++L+ K ++ K IR S+ +TK+R+FIGNV + T E + + D G G
Sbjct: 63 YPSREDAAAAAEKLNEKAIEDKKIRVSVKQTKHRVFIGNVDRMKTRAEVIQGLRDAGCGG 122
Query: 214 VETIELIK--DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
VE +E+ K +P PS+ +GF F +YN +CA+ + K+L+ + G T WADPK
Sbjct: 123 VEKLEMPKNRNPAYPSQTKGFGFADFYNASCAERA-MKILSESRLFLGRPVTARWADPK- 180
Query: 272 TPDHSAAASQVKALYVKNIP-----DNTSTEKIKELFQRHGEVTKVVM---PPG---KSG 320
PD S + VK++YV N+P D EK+K LF ++G+V V + PG S
Sbjct: 181 LPDPS---TTVKSVYVGNLPPSLVADEGGEEKLKALFGKYGDVETVFVYKPRPGDASASA 237
Query: 321 KRDFGFIHYAERSSALKAV 339
KR+F F+HYA R SAL A
Sbjct: 238 KRNFAFVHYASRESALAAA 256
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 153/250 (61%), Gaps = 8/250 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE
Sbjct: 155 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 214
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 215 AQQAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKVTEGLNDVIL 274
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 275 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 334
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ + E +++ F +HG++ +V +D+ FIH+ ER SA+KA+
Sbjct: 335 -KVKVLFVRNLASTVTEEILEKTFSQHGKLERV------KKLKDYAFIHFEERESAVKAL 387
Query: 340 KDTEKYEIDG 349
D +++G
Sbjct: 388 TDLNGKDLEG 397
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +G EVF+G +PKD E++L L E G ++++RLM D SG ++G+AF++F +++ A
Sbjct: 163 PASGCEVFVGKIPKDMFEDELIPLFEKCGRIWDLRLMMDPLSGLNRGYAFITFCNRDGAH 222
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
++ EL + E+ KGK I ++S +RLF+GN+PKN ++E + PG+ + +
Sbjct: 223 NSVRELDNYEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELYEEFSKHAPGLTEVIIYS 282
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ + WADP+ PD A +
Sbjct: 283 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQEEPDQETMA-K 341
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + + E++KELF++HG V +V +D+ F+H+ ER A+KA+
Sbjct: 342 VKVLYVRNLTADVTEERLKELFEQHGRVERV------KKIKDYAFVHFEERDHAVKAMNQ 395
Query: 342 TEKYEIDG 349
+ ++ G
Sbjct: 396 LQGKDLCG 403
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L D +EE L++L E G V V+ +KD +AFV F ++ A KA+++L
Sbjct: 345 LYVRNLTADVTEERLKELFEQHGRVERVKKIKD--------YAFVHFEERDHAVKAMNQL 396
Query: 169 HSKELKGKTIRCSLSE 184
K+L G + SL++
Sbjct: 397 QGKDLCGAPMEVSLAK 412
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 148/247 (59%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L+ E++ GK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 219 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEI 347
EI
Sbjct: 392 GLNGKEI 398
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 153/252 (60%), Gaps = 9/252 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 219 QAVKELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYVKN+ + S EK+KE+F+++G + +V +D+ F+H+ ER +A+KA+ +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKEVFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMNE 391
Query: 342 TEKYEIDGKSHL 353
EI G SH+
Sbjct: 392 LNGKEIGG-SHI 402
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L+++ E G++ V+ +KD +AFV F ++ A KA++EL
Sbjct: 341 LYVKNLTQDCSEEKLKEVFEQYGNIERVKKIKD--------YAFVHFEERDNAVKAMNEL 392
Query: 169 HSKELKGKTIRCSLSE 184
+ KE+ G I SL++
Sbjct: 393 NGKEIGGSHIEVSLAK 408
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 148/247 (59%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L+ E++ GK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 253 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 312
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 371
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 372 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 425
Query: 341 DTEKYEI 347
EI
Sbjct: 426 GLNGKEI 432
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +G EVF G +PKD E++L L E G ++++RLM D +G+++G+AFV+F SKE A+
Sbjct: 173 PGSGCEVFCGKIPKDMYEDELIPLFEKCGSIWDLRLMMDPMTGQNRGYAFVTFTSKEAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 233 NAVRELDNHEMKPGKPLKVNISVPNLRLFVGNIPKSKGKEEIMEEFSKLAAGLTKVIIYS 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD + S+
Sbjct: 293 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRVKVWGCDIIVDWADPQEEPD-AETMSK 351
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + S EK+KE F+ +G++ +V +D+ FIH+ +R +A+KA+ +
Sbjct: 352 VKVLYVRNLTQDCSEEKLKESFEVYGKIDRV------KKIKDYAFIHFEDRDNAIKALNE 405
Query: 342 TEKYEIDG 349
++ G
Sbjct: 406 LNGKDLAG 413
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G + V+ +KD +AF+ F ++ A KA++EL
Sbjct: 355 LYVRNLTQDCSEEKLKESFEVYGKIDRVKKIKD--------YAFIHFEDRDNAIKALNEL 406
Query: 169 HSKELKGKTIRCSLSE 184
+ K+L G I SL++
Sbjct: 407 NGKDLAGACIEVSLAK 422
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 148/247 (59%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L+ E++ GK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 261 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEI 347
EI
Sbjct: 434 GLNGKEI 440
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 153/252 (60%), Gaps = 9/252 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F +++ A+
Sbjct: 160 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFITFTNRDAAQ 219
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK+++ ++S RLF+GN+PK+ ++E + G+ + +
Sbjct: 220 QAVRELDNYEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLTEVIIYS 279
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 280 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRMKVWGCDIIVDWADPQEEPDEQ-TMSK 338
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYV+N+ + S EK+KE F+++G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 339 VRVLYVRNLTQDCSEEKLKECFEQYGKIERV------KKIKDYAFIHFEERECAVKAMRE 392
Query: 342 TEKYEIDGKSHL 353
E+ G SH+
Sbjct: 393 LNGKEMGG-SHI 403
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G + V+ +KD +AF+ F +E A KA+ EL
Sbjct: 342 LYVRNLTQDCSEEKLKECFEQYGKIERVKKIKD--------YAFIHFEERECAVKAMREL 393
Query: 169 HSKELKGKTIRCSLSE 184
+ KE+ G I SL++
Sbjct: 394 NGKEMGGSHIEVSLAK 409
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 152/253 (60%), Gaps = 9/253 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGVIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 162 KKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L+ E+ KGK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 222 INAVRQLNDFEIRKGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEIDGKSHL 353
E+ G S++
Sbjct: 395 GLNGKEV-GASNI 406
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 147/246 (59%), Gaps = 8/246 (3%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G EVF+G +PKD E++L L E G ++++RLM D SG ++G+AF++F ++E A +
Sbjct: 158 SGCEVFVGKIPKDMFEDELIPLFEKCGKIWDLRLMMDPLSGLNRGYAFITFCNREGAHNS 217
Query: 165 IDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ EL + E+ KGK I ++S +RLF+GN+PKN ++E + PG+ + + P
Sbjct: 218 VRELDNHEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELFEEFSKHAPGLTEVIIYSSP 277
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+ +NRGF F+ Y ++ A +++++ K+ + WADP+ PD A +VK
Sbjct: 278 DDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQEEPDEETMA-KVK 336
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LYV+N+ + + EK+KELF+ HG V +V +D+ F+H+ ER A++A++ +
Sbjct: 337 VLYVRNLTTDVTEEKLKELFEAHGRVERV------KKIKDYAFVHFEERDHAVRAMEQLQ 390
Query: 344 KYEIDG 349
++ G
Sbjct: 391 GKDLCG 396
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L D +EE L++L E G V V+ +KD +AFV F ++ A +A+++L
Sbjct: 338 LYVRNLTTDVTEEKLKELFEAHGRVERVKKIKD--------YAFVHFEERDHAVRAMEQL 389
Query: 169 HSKELKGKTIRCSLSE 184
K+L G + SL++
Sbjct: 390 QGKDLCGAPMEVSLAK 405
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 154/252 (61%), Gaps = 9/252 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D SG ++G+AF++F ++E A+
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK+++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 275
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 276 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 334
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYV+N+ + S EK+KE F+++G++ +V +D+ FIH+ +R +A+KA+ +
Sbjct: 335 VRVLYVRNLTQDCSEEKLKESFEQYGKIERV------KKIKDYAFIHFEDRDNAVKAMNE 388
Query: 342 TEKYEIDGKSHL 353
E+ G SH+
Sbjct: 389 LNGKEMGG-SHI 399
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G + V+ +KD +AF+ F ++ A KA++EL
Sbjct: 338 LYVRNLTQDCSEEKLKESFEQYGKIERVKKIKD--------YAFIHFEDRDNAVKAMNEL 389
Query: 169 HSKELKGKTIRCSLSE 184
+ KE+ G I SL++
Sbjct: 390 NGKEMGGSHIEVSLAK 405
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ ++ E++ GK I +S NRLF+G++PK+ T+D+ + V G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ FIH+ ER A+KA+ +
Sbjct: 338 VKVLFVRNLASTVTEELLEKTFCQFGKLERV------KKLKDYAFIHFEERDGAVKALAE 391
Query: 342 TEKYEIDG 349
+++G
Sbjct: 392 LHGKDLEG 399
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 152/252 (60%), Gaps = 9/252 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYVKN+ + S EK+KE F+++G + +V +D+ F+H+ ER +A+KA+ +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKESFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMNE 391
Query: 342 TEKYEIDGKSHL 353
EI G SH+
Sbjct: 392 LNGKEIGG-SHI 402
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G++ V+ +KD +AFV F ++ A KA++EL
Sbjct: 341 LYVKNLTQDCSEEKLKESFEQYGNIERVKKIKD--------YAFVHFEERDNAVKAMNEL 392
Query: 169 HSKELKGKTIRCSLSE 184
+ KE+ G I SL++
Sbjct: 393 NGKEIGGSHIEVSLAK 408
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 152/252 (60%), Gaps = 9/252 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYVKN+ + S EK+KE F+++G + +V +D+ F+H+ ER +A+KA+ +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKESFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMNE 391
Query: 342 TEKYEIDGKSHL 353
EI G SH+
Sbjct: 392 LNGKEIGG-SHI 402
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G++ V+ +KD +AFV F ++ A KA++EL
Sbjct: 341 LYVKNLTQDCSEEKLKESFEQYGNIERVKKIKD--------YAFVHFEERDNAVKAMNEL 392
Query: 169 HSKELKGKTIRCSLSE 184
+ KE+ G I SL++
Sbjct: 393 NGKEIGGSHIEVSLAK 408
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F S++ A
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ EL++ E+K G ++ ++S RLF+GN+PK+ ++E + G+ + +
Sbjct: 224 NAVRELNNYEIKPGNCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLVEVIIYS 283
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ + WADP+ PD S+
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQ-TMSK 342
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ +TS EK+KE F++ G V +V +D+ F+H+ +R +A+KA+KD
Sbjct: 343 VKVLYVRNLTQDTSEEKLKESFEQFGRVERV------KKIKDYAFVHFEDRDNAVKAMKD 396
Query: 342 TEKYEIDG 349
+ E+ G
Sbjct: 397 LDGKEVGG 404
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G V V+ +KD +AFV F ++ A KA+ +L
Sbjct: 346 LYVRNLTQDTSEEKLKESFEQFGRVERVKKIKD--------YAFVHFEDRDNAVKAMKDL 397
Query: 169 HSKELKGKTIRCSLSE 184
KE+ G I SL++
Sbjct: 398 DGKEVGGSNIEVSLAK 413
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F SKE A+
Sbjct: 158 PTIGTEIFVGKIPRDLFEDELVPLFERAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 QAVKLCNNSEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ FIH+ ER SA+KA+ D
Sbjct: 337 VKVLFVRNLASAVTEELLEKTFSQFGKLERV------KKLKDYAFIHFEERDSAVKALGD 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 LNGKDLEG 398
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 153/253 (60%), Gaps = 9/253 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 229 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 288
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 289 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 348
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 349 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 407
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 408 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 461
Query: 341 DTEKYEIDGKSHL 353
EI G S++
Sbjct: 462 GLNGKEI-GASNI 473
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ ++ E++ GK I +S NRLF+G++PK+ T+D+ + V G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 279 QPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ FIH+ ER A+KA+ +
Sbjct: 338 VKVLFVRNLASTVTEELLEKTFCQFGKLERV------KKLKDYAFIHFEERDGAVKALAE 391
Query: 342 TEKYEIDG 349
+++G
Sbjct: 392 LHGKDLEG 399
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 153/252 (60%), Gaps = 9/252 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D SG ++G+AF++F ++E A+
Sbjct: 150 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 209
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK+++ ++S RLF+GN+PK+ ++E + G+ + +
Sbjct: 210 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLTEVIIYS 269
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 270 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 328
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYV+N+ + S EK+KE F+++G++ +V +D+ FIH+ +R +A++A+ +
Sbjct: 329 VRVLYVRNLTQDCSEEKLKESFEQYGKIERV------KKIKDYAFIHFEDRDNAVRAMNE 382
Query: 342 TEKYEIDGKSHL 353
E+ G SH+
Sbjct: 383 LNGKEMGG-SHI 393
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G + V+ +KD +AF+ F ++ A +A++EL
Sbjct: 332 LYVRNLTQDCSEEKLKESFEQYGKIERVKKIKD--------YAFIHFEDRDNAVRAMNEL 383
Query: 169 HSKELKGKTIRCSLSE 184
+ KE+ G I SL++
Sbjct: 384 NGKEMGGSHIEVSLAK 399
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ ++ E++ GK I +S NRLF+G++PK+ T+D+ + V G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ FIH+ ER A+KA+ +
Sbjct: 338 VKVLFVRNLASTVTEELLEKTFCQFGKLERV------KKLKDYAFIHFEERDGAVKALAE 391
Query: 342 TEKYEIDG 349
+++G
Sbjct: 392 LHGKDLEG 399
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 153/253 (60%), Gaps = 9/253 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F +++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + EK+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVTEEKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEIDGKSHL 353
EI G S++
Sbjct: 395 GLNGKEI-GASNI 406
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEI 347
EI
Sbjct: 392 GLNGKEI 398
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+F+G +P+D E++L L E G ++++RLM D S ++G+AF++F SKE A+
Sbjct: 158 PPVGTEIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANGVTEELLEKSFSEFGKLERV------KKLKDYAFIHFEERDGAVKALEE 390
Query: 342 TEKYEIDG 349
E++G
Sbjct: 391 MNGKELEG 398
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 164 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 223
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 224 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 283
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 284 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 342
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 343 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 396
Query: 341 DTEKYEI 347
EI
Sbjct: 397 GLNGKEI 403
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 152/250 (60%), Gaps = 8/250 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE
Sbjct: 156 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 215
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 216 AQQAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVIL 275
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 276 YLQPVDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLEDPDPEVMA 335
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+
Sbjct: 336 -KVKVLFVRNLASSVTEELLEKAFSQFGKLERV------KKLKDYAFIHFEERDGAVKAL 388
Query: 340 KDTEKYEIDG 349
D +++G
Sbjct: 389 ADLNGKDLEG 398
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 148/249 (59%), Gaps = 13/249 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F S++ A
Sbjct: 126 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 185
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E + G+ + +
Sbjct: 186 NAVRELDNYEIKSGKCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLMEVIIYS 245
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 246 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 304
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ +TS EK+KE F++ G+V +V +D+ FIH+ +R A+ A+K
Sbjct: 305 VKVLYVRNLTQDTSEEKLKESFEQFGKVERV------KKIKDYAFIHFEDRDHAVNAMK- 357
Query: 342 TEKYEIDGK 350
E+DGK
Sbjct: 358 ----ELDGK 362
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G V V+ +KD +AF+ F ++ A A+ EL
Sbjct: 308 LYVRNLTQDTSEEKLKESFEQFGKVERVKKIKD--------YAFIHFEDRDHAVNAMKEL 359
Query: 169 HSKELKGKTIRCSLSE 184
K+L G + SL++
Sbjct: 360 DGKDLGGSNLEVSLAK 375
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F +++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + EK+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVTEEKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEI 347
EI
Sbjct: 395 GLNGKEI 401
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 143/248 (57%), Gaps = 7/248 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +PKD E++L L E G ++++RLM D +G ++G+AF++F K+ A+
Sbjct: 169 PAAGCEVFVGKIPKDMFEDELIPLFEKCGKIYDLRLMMDPLTGLNRGYAFITFCEKQGAQ 228
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A++ + E+ KGK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 229 EAVNMFDNHEIRKGKHIGVTISINNHRLFVGNIPKNRGRDELLEEFTKHAPGLTDVIIYT 288
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S S+
Sbjct: 289 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPD-SETMSK 347
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + EK+KE+F+ G + V RD+ F+H+ +R AL+A++
Sbjct: 348 VKVLYVRNLTQEVTEEKLKEVFEEFGGRVERV-----KKIRDYAFVHFEDREDALRALEK 402
Query: 342 TEKYEIDG 349
E G
Sbjct: 403 NNNREAGG 410
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEI 347
EI
Sbjct: 434 GLNGKEI 440
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 371
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 372 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 425
Query: 341 DTEKYEI 347
EI
Sbjct: 426 GLNGKEI 432
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F +++ A+
Sbjct: 173 PGAGCEVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ +L + E+K GKT++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 233 QAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYS 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 293 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 351
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ S EK+KE F+ +G+V +V +D+ FIH+ +R +A+KA+++
Sbjct: 352 VKVLYVRNLTQEISEEKLKEAFEAYGKVERV------KKIKDYAFIHFEDRENAVKAMEE 405
Query: 342 TEKYEIDG 349
+ E+ G
Sbjct: 406 LDGKEMGG 413
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L ++ SEE L++ E G V V+ +KD +AF+ F +E A KA++EL
Sbjct: 355 LYVRNLTQEISEEKLKEAFEAYGKVERVKKIKD--------YAFIHFEDRENAVKAMEEL 406
Query: 169 HSKELKGKTIRCSLSE 184
KE+ G I SL++
Sbjct: 407 DGKEMGGSNIEVSLAK 422
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 164 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 223
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 224 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 283
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 284 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 342
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 343 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 396
Query: 341 DTEKYEI 347
EI
Sbjct: 397 GLNGKEI 403
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEI 347
EI
Sbjct: 392 GLNGKEI 398
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEI 347
EI
Sbjct: 392 GLNGKEI 398
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEI 347
EI
Sbjct: 434 GLNGKEI 440
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEI 347
EI
Sbjct: 434 GLNGKEI 440
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVSEDKLKEHFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEI 347
EI
Sbjct: 395 GLNGKEI 401
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 151/248 (60%), Gaps = 7/248 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
+K L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 338 MKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 391
Query: 342 TEKYEIDG 349
+++G
Sbjct: 392 MNGKDLEG 399
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 197 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 256
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 257 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 316
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 317 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 375
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 376 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 429
Query: 341 DTEKYEI 347
EI
Sbjct: 430 GLNGKEI 436
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 152/248 (61%), Gaps = 17/248 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S++FIG LP+D E++L + EP G ++++R+M D SG +KGFAF ++ +KE A A+
Sbjct: 164 SQIFIGKLPRDMYEDELVPMFEPHGTIYDLRIMVDPFSGLNKGFAFCTYTTKEAATLAVK 223
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETIELIK 221
E+ K+++ GKT+ LS+ NRLF+G++PK+ T+ DEF +E++ + I I
Sbjct: 224 EMDGKQVRDGKTLGVCLSQANNRLFVGSIPKSKTKQQIFDEFASKVENLS---DVIVYIS 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN-TPTISWADPKSTPDHSAAAS 280
++ S+NRGF+F+ + + A +R++ + K+ GN TPT+ WADP PD + S
Sbjct: 281 S-EDKSKNRGFAFLEFTTHKDASLARRRFMTGRIKVFGNITPTVDWADPVEEPDDN-VMS 338
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK +YV+N+ K+ ELF+++G V KV +D+ FIH+ R A++A++
Sbjct: 339 KVKVVYVRNLSPAIEETKLNELFKQYGAVEKV------KKLKDYAFIHFVNRDDAVRAIE 392
Query: 341 DTEKYEID 348
+ ++D
Sbjct: 393 ELNGQDLD 400
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 150/261 (57%), Gaps = 15/261 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
E+ KH +L EVF+GGL K+ +EE+L + +GDV EVRLMK+ ++G++KG+A
Sbjct: 11 ERRKHKKL--------EVFVGGLDKETTEEELESVFGRVGDVVEVRLMKNAQTGKNKGYA 62
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
F+ F S AK+A +L E++G++ SE + LF+GN+ K W ++ + ++
Sbjct: 63 FIRFASAAIAKRASHDLERVEIRGRSCGVLPSEENDTLFLGNISKLWKKETVLETLKKFA 122
Query: 212 P-GVETIELIKDPQNPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWAD 268
VE I L++DPQ NRGF+F+ + + A + R + +A F D + I+WA
Sbjct: 123 IENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQQADAVFGTD-RSAKIAWAQ 181
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGKR-DFGF 326
P + PD SQVK+++V +P K+KELF ++G V ++V+ S KR DFGF
Sbjct: 182 PLNEPDED-IMSQVKSVFVDGMPPTWDERKVKELFNKYGAVERIVLARNMLSAKRKDFGF 240
Query: 327 IHYAERSSALKAVKDTEKYEI 347
++Y ER +AL + EI
Sbjct: 241 VNYVERDAALLCIDALNNTEI 261
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 371
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 372 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 425
Query: 341 DTEKYEI 347
EI
Sbjct: 426 GLNGKEI 432
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEI 347
EI
Sbjct: 434 GLNGKEI 440
>gi|224613218|gb|ACN60188.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 583
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 154/250 (61%), Gaps = 8/250 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE
Sbjct: 111 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 170
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A +A++ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 171 ASEAVNLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQMVEEFAKVTEGLNDVIL 230
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD S
Sbjct: 231 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNAVTVEWADPIEEPD-SEVM 289
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
++VK L+V+N+ ++ + E +++ F + G + +V +D+ FIH+ ER SA+KA+
Sbjct: 290 AKVKVLFVRNLANSVTEEILEKSFGQFGRLERV------KKLKDYAFIHFDERDSAVKAL 343
Query: 340 KDTEKYEIDG 349
+ +++G
Sbjct: 344 AEMNGKDLEG 353
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEI 347
EI
Sbjct: 392 GLNGKEI 398
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEI 347
EI
Sbjct: 434 GLNGKEI 440
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 351
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 352 VKVLFVRNLANTVTEEILEKAFGQFGKLERV------KKLKDYAFIHFDERVGAVKAMEE 405
Query: 342 TEKYEIDG 349
E++G
Sbjct: 406 MNGKELEG 413
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 120 EAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 239 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 342 TEKYEIDG 349
+++G
Sbjct: 293 MNGKDLEG 300
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 371
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 372 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 425
Query: 341 DTEKYEI 347
EI
Sbjct: 426 GLNGKEI 432
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 305 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 364
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 365 EAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 424
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 425 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 483
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 484 VKVLFVRNLANTVTEEILEKAFGQFGKLERV------KKLKDYAFIHFDERVGAVKAMEE 537
Query: 342 TEKYEIDG 349
E++G
Sbjct: 538 MNGKELEG 545
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 120 EAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 239 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 342 TEKYEIDG 349
+++G
Sbjct: 293 MNGKDLEG 300
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 194 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 253
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 254 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 313
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 314 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 372
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 373 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 426
Query: 342 TEKYEIDG 349
+++G
Sbjct: 427 MNGKDLEG 434
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 120 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 179
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 180 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 239
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 240 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 298
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 299 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 352
Query: 341 DTEKYEI 347
EI
Sbjct: 353 GLNGKEI 359
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 152/250 (60%), Gaps = 8/250 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE
Sbjct: 167 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 226
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A +A++ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 227 ASEAVNLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKVTEGLNDVIL 286
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 287 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA 346
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ ++ + E +++ F + G++ +V +D+ F+H+ ER +A+KA+
Sbjct: 347 -KVKVLFVRNLANSVTEEILEKSFSQFGKLERV------KKLKDYAFVHFDERDAAVKAL 399
Query: 340 KDTEKYEIDG 349
++G
Sbjct: 400 AQMNGKVLEG 409
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 198 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 257
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 258 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 317
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 318 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 376
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 377 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 430
Query: 342 TEKYEIDG 349
+++G
Sbjct: 431 MNGKDLEG 438
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 162 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 221
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 222 EAVKLYNNYEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 281
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD S+
Sbjct: 282 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPD-PEVMSK 340
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+ +
Sbjct: 341 VKVLFVRNLANTVTEEILEKAFGQFGKLERV------KKLKDYAFIHFDERVGAVKAMDE 394
Query: 342 TEKYEIDG 349
E++G
Sbjct: 395 MNGKELEG 402
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 153/253 (60%), Gaps = 9/253 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEIDGKSHL 353
E+ G S++
Sbjct: 395 GLNGKEV-GASNI 406
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSQVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 169 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCNKEAAQ 228
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 229 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 288
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 289 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 347
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ ++ + E +++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 348 VKVLFVRNLANSVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEG 401
Query: 342 TEKYEIDG 349
E++G
Sbjct: 402 MNGKELEG 409
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 153/253 (60%), Gaps = 9/253 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 218 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 277
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 278 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 337
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 338 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 396
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 397 KVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 450
Query: 341 DTEKYEIDGKSHL 353
E+ G S++
Sbjct: 451 GLNGKEV-GASNI 462
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 351
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 352 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 405
Query: 342 TEKYEIDG 349
+++G
Sbjct: 406 MNGKDLEG 413
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 333
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 334 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 387
Query: 342 TEKYEIDG 349
+++G
Sbjct: 388 MNGKDLEG 395
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 333
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 334 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 387
Query: 342 TEKYEIDG 349
+++G
Sbjct: 388 MNGKDLEG 395
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 154/251 (61%), Gaps = 14/251 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF+++ +K+ A+
Sbjct: 159 PGIGTEVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP---GVETIE 218
KA+ + E++ GK + +S NRLF+G++PKN T + ++ED G G++ +
Sbjct: 219 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRES---ILEDFGKVTEGLQEVI 275
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
L + P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD
Sbjct: 276 LYQQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVM 335
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
A +VK L+V+N+ + E +++ F + G++ +V +D+ F+H+ ER +A++A
Sbjct: 336 A-KVKVLFVRNLATAVTEELLEKTFAQFGKLERV------KKLKDYAFVHFEERDAAVRA 388
Query: 339 VKDTEKYEIDG 349
+ + E+ G
Sbjct: 389 MDEMNGKEVGG 399
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF+++ +K+ A+
Sbjct: 159 PGIGTEVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ + E++ GK + +S NRLF+G++PKN T + + V G++ + L +
Sbjct: 219 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYQ 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD A +
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMA-K 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ F+H+ ER +A++A+ +
Sbjct: 338 VKVLFVRNLATAVTEELLEKTFAQFGKLERV------KKLKDYAFVHFEERDAAVRAMDE 391
Query: 342 TEKYEIDG 349
E+ G
Sbjct: 392 MNGKEVGG 399
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 194 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 253
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 254 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 313
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 314 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 372
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 373 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 426
Query: 342 TEKYEIDG 349
+++G
Sbjct: 427 MNGKDLEG 434
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F +++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 222 INAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEI 347
EI
Sbjct: 395 GLNGKEI 401
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 260 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 319
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 320 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 379
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 380 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 438
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 439 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 492
Query: 342 TEKYEIDG 349
+++G
Sbjct: 493 MNGKDLEG 500
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 351
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 352 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 405
Query: 342 TEKYEIDG 349
+++G
Sbjct: 406 MNGKDLEG 413
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 154/251 (61%), Gaps = 14/251 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF+++ +K+ A+
Sbjct: 161 PGSGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP---GVETIE 218
KA+ + E++ GK + +S NRLF+G++PKN T + ++ED G G++ +
Sbjct: 221 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRES---ILEDFGKVTEGLQEVI 277
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD
Sbjct: 278 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVM 337
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
A +VK L+V+ + + E +++ F + G++ +V +D+ F+H+ ER +A+KA
Sbjct: 338 A-KVKVLFVRKLATAVTEELLEKTFSQFGKLERV------KKLKDYAFVHFEERDAAVKA 390
Query: 339 VKDTEKYEIDG 349
+++ E+ G
Sbjct: 391 MEEMNGKELGG 401
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G LP E++L L E G ++++RLM D SG ++G+AFV++ +KE A+
Sbjct: 155 PTAGCEVFCGKLPNTVFEDELIPLFEKCGKIYDLRLMMDPLSGTNRGYAFVTYTTKEEAE 214
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A EL E+K GK I+ ++S RLFIGN+PK+ +++ + + G+ + +
Sbjct: 215 RATVELDGYEIKPGKNIKVNISVPNLRLFIGNIPKSKGKEDIMEEFGKITSGLTEVIIYS 274
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ N+K+ G + WADP+ PD S+
Sbjct: 275 SPDDRRKNRGFCFLEYDSHKAASVAKRRLSAPNYKVWGCDIIVDWADPQEEPDDE-TMSK 333
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + ++KE F+ HG V +V +D+ FIH+ +R ALKA+++
Sbjct: 334 VKVLYVRNLTQEVTENRLKETFEVHGSVERV------KKIKDYAFIHFNDRGCALKALEE 387
Query: 342 TEKYEIDGKS 351
+DG +
Sbjct: 388 LNGSNLDGAT 397
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 150/250 (60%), Gaps = 8/250 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F +KE
Sbjct: 61 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 120
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ + E++ GK I +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 121 AQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 180
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 181 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 240
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ + E +++ F G++ +V +D+ F+H+ ER +A++A+
Sbjct: 241 -KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV------KKLKDYAFVHFDERDAAVRAM 293
Query: 340 KDTEKYEIDG 349
+ E++G
Sbjct: 294 DEMNGTELEG 303
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 130 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 189
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 190 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 249
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 308
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 309 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 362
Query: 342 TEKYEIDG 349
+++G
Sbjct: 363 MNGKDLEG 370
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 150/250 (60%), Gaps = 8/250 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F +KE
Sbjct: 58 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 117
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ + E++ GK I +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 118 AQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 237
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ + E +++ F G++ +V +D+ F+H+ ER +A++A+
Sbjct: 238 -KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV------KKLKDYAFVHFDERDAAVRAM 290
Query: 340 KDTEKYEIDG 349
+ E++G
Sbjct: 291 DEMNGTELEG 300
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 247 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 342 TEKYEIDG 349
+++G
Sbjct: 301 MNGKDLEG 308
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 231 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 290
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 291 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 350
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 351 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 409
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 410 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 463
Query: 342 TEKYEIDG 349
+++G
Sbjct: 464 MNGKDLEG 471
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 247 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 342 TEKYEIDG 349
+++G
Sbjct: 301 MNGKDLEG 308
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 209 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 268
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 269 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 328
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 329 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 387
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 388 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 441
Query: 342 TEKYEIDG 349
+++G
Sbjct: 442 MNGKDLEG 449
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 120 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 239 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 342 TEKYEIDG 349
+++G
Sbjct: 293 MNGKDLEG 300
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 120 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 239 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 342 TEKYEIDG 349
+++G
Sbjct: 293 MNGKDLEG 300
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 202 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 261
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 262 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 321
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 322 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 380
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 381 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 434
Query: 342 TEKYEIDG 349
+++G
Sbjct: 435 MNGKDLEG 442
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 150/245 (61%), Gaps = 9/245 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S+VFIG +P+D E++L + E G +++ RLM D SG +KGFAF +F +K+ A+ A+
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
+L +KE++ GK + +S +RLF+G++PK ++ E + V G++ + +
Sbjct: 212 KLDNKEIRPGKRLGVCISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQ 271
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN-TPTISWADPKSTPDHSAAASQVKA 284
+NRGF+F+ Y ++ A +R+++ + K+ GN T+ WADP+ PD A +VK
Sbjct: 272 KGKNRGFAFLEYESHQAASLARRRLASGRIKVWGNIVVTVDWADPQEEPDDD-AMKKVKV 330
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
+Y++N+ + + EK+KE + ++G V +V +D+ F+H+ ER ALKA+++T+
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRV------KKLKDYAFVHFTERDHALKAIEETDG 384
Query: 345 YEIDG 349
E+DG
Sbjct: 385 KEMDG 389
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 154/250 (61%), Gaps = 11/250 (4%)
Query: 104 PNG--SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
P+G +VF+G +P+D E+++ L E G ++++RLM D SG ++G+AFV+F +E A
Sbjct: 169 PSGDAEQVFVGKIPRDMFEDEIIPLFEKCGKIWDLRLMMDPLSGLNRGYAFVTFCDREGA 228
Query: 162 KKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
++A+ +L + E+ KGK + +S +RLF+G++PK ++DE + G+ + +
Sbjct: 229 QEAVKQLDNHEIRKGKHLGVCISVANHRLFVGSIPKTKSKDEILEEFNKHVGGLTDVIIY 288
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAA 279
P++ +NRGF+F+ + ++ A +R+++++ K+ GN+ T+ WADP+ PD A
Sbjct: 289 HMPEDRKKNRGFAFLHFESHKAASLARRRLMSGRIKVWGNSNVTVDWADPQEEPDEETMA 348
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK LYV+N+ + EK+KE FQ G V +V +D+ F+H+ ER +A+KA+
Sbjct: 349 -KVKVLYVRNLTPDAEEEKLKEAFQAFGTVERV------KKLKDYCFVHFEERDAAVKAM 401
Query: 340 KDTEKYEIDG 349
++ E++G
Sbjct: 402 EELNGKEVEG 411
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKV 312
+ LD T + P D A + + ++V IP + ++I LF++ G++ ++
Sbjct: 146 YSLDVTTGQRKYGGPPPDWDGPAPSGDAEQVFVGKIPRDMFEDEIIPLFEKCGKIWDLRL 205
Query: 313 VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+M P R + F+ + +R A +AVK + +EI HL + V
Sbjct: 206 MMDPLSGLNRGYAFVTFCDREGAQEAVKQLDNHEIRKGKHLGVCISV 252
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L DA EE L++ + G V V+ +KD + FV F ++ A KA++EL
Sbjct: 353 LYVRNLTPDAEEEKLKEAFQAFGTVERVKKLKD--------YCFVHFEERDAAVKAMEEL 404
Query: 169 HSKELKGKTIRCSLSE 184
+ KE++G + SL++
Sbjct: 405 NGKEVEGSVVDISLAK 420
>gi|356561166|ref|XP_003548856.1| PREDICTED: uncharacterized protein LOC100819035 [Glycine max]
Length = 953
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 154/252 (61%), Gaps = 7/252 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL +DA+EEDLR + + IG++ EVRL K+ + ++KG+AFV F +KE AKKA+ E
Sbjct: 459 EIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKENAKKALSE 518
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE + LF+GN+ WT++ ++ ++D G GVE+I L+ D Q+
Sbjct: 519 MKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVESITLVPDVQHE 578
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+RGF+F+ + + +A + R + + F T +++A+P PD A QVK+
Sbjct: 579 GLSRGFAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKVAFAEPIHEPDPEIMA-QVKS 637
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDT 342
+++ +P + + ++ELF+ +GE+ ++V+ S ++D+GF+ ++ +A+ V
Sbjct: 638 VFINGLPPHWDEDHVRELFKAYGEIVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGV 697
Query: 343 EKYEI-DGKSHL 353
K E+ DG S +
Sbjct: 698 NKSELGDGASKI 709
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 153/254 (60%), Gaps = 16/254 (6%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F +KE
Sbjct: 58 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 117
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVE 215
A++A+ + E++ GK I +S NRLF+G++PKN T+ +EF KV E G+
Sbjct: 118 AQEAVKLCDNYEIRTGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTE----GLL 173
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 174 DVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDP 233
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSA 335
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ ER +A
Sbjct: 234 EIMA-KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV------KKLKDYAFVHFDERDAA 286
Query: 336 LKAVKDTEKYEIDG 349
++A+ + E++G
Sbjct: 287 VRAMDEMNGAELEG 300
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 93 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 152
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 153 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 212
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 213 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 271
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 272 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 325
Query: 342 TEKYEIDG 349
+++G
Sbjct: 326 MNGKDLEG 333
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 154/258 (59%), Gaps = 14/258 (5%)
Query: 101 ALPPNG-----SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSF 155
A+PP ++VF+ +P+D E++L L E G +F++RLM D SG+++G+AFV++
Sbjct: 143 AMPPPCLVLLLAQVFVSKIPRDMFEDELIPLFEKPGPIFDLRLMMDPLSGQNRGYAFVTY 202
Query: 156 RSKEFAKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+KE A+ A+ +L + E+ KG+ + +S NRLF+G++PKN ++ E V G+
Sbjct: 203 TTKESAQDAVKQLDNYEIRKGRWLGVCISVANNRLFVGSIPKNKSKQEIFDEFGKVTNGL 262
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN-TPTISWADPKSTP 273
+ + + P++ +NRGF+F+ Y ++ A +R+++++ K+ GN T T+ WADP P
Sbjct: 263 KDVIIYYMPEDKRKNRGFAFLEYLSHKEASLARRRLMSGRIKVWGNITVTVDWADPIEEP 322
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333
D S+VK LYV+N+ + E I+ F+ +G V +V +D+ F+H+ R
Sbjct: 323 DDE-VMSKVKVLYVRNLAVEAAEEIIQAKFEPYGTVERV------KKIKDYAFVHFENRE 375
Query: 334 SALKAVKDTEKYEIDGKS 351
A+KA++D E++G +
Sbjct: 376 DAIKAMEDLNGKELEGSA 393
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +A+EE ++ EP G V V+ +KD +AFV F ++E A KA+++L
Sbjct: 333 LYVRNLAVEAAEEIIQAKFEPYGTVERVKKIKD--------YAFVHFENREDAIKAMEDL 384
Query: 169 HSKELKGKTIRCSLSE 184
+ KEL+G + SL++
Sbjct: 385 NGKELEGSAMEISLAK 400
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 87 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 146
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 147 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 206
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 207 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 265
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 266 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 319
Query: 342 TEKYEIDG 349
+++G
Sbjct: 320 MNGKDLEG 327
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 154/254 (60%), Gaps = 17/254 (6%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F +++ A+
Sbjct: 173 PGAGCEVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG------PGVE 215
+A+ +L + E+K GKT++ ++S RLF+GN+PK+ ++E ++E+ G G+
Sbjct: 233 QAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEE---ILEEFGKLTGYTAGLV 289
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ + P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD
Sbjct: 290 EVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDE 349
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSA 335
S+VK LYV+N+ S EK+KE F+ +G+V +V +D+ FIH+ +R +A
Sbjct: 350 Q-TMSKVKVLYVRNLTQEISEEKLKEAFEAYGKVERV------KKIKDYAFIHFEDRENA 402
Query: 336 LKAVKDTEKYEIDG 349
+KA+++ + E+ G
Sbjct: 403 VKAMEELDGKEMGG 416
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L ++ SEE L++ E G V V+ +KD +AF+ F +E A KA++EL
Sbjct: 358 LYVRNLTQEISEEKLKEAFEAYGKVERVKKIKD--------YAFIHFEDRENAVKAMEEL 409
Query: 169 HSKELKGKTIRCSLSE 184
KE+ G I SL++
Sbjct: 410 DGKEMGGSNIEVSLAK 425
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKRKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 255 FKLDGNTPTISWADPKSTPDHSAAASQVKA-LYVKNIPDNTSTEKIKELFQRHGEV--TK 311
+ LD T + DP +S + ++V IP + +++ LF++ G + +
Sbjct: 136 YTLDVTTGQRKYGDPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLR 195
Query: 312 VVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
++M P R + FI + + +A +AVK + YEI HL + V
Sbjct: 196 LMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISV 243
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NR F F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NR F F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|356502130|ref|XP_003519874.1| PREDICTED: uncharacterized protein LOC100784338 [Glycine max]
Length = 884
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 151/252 (59%), Gaps = 7/252 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL +DA+EEDLR + + IG++ EVRL K+ + ++KG+AFV F KE AKKA+ E
Sbjct: 390 EIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFSDKEHAKKALSE 449
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE + LF+GN+ WT++ ++ ++D G GVE I L+ D Q+
Sbjct: 450 MKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENIMLVPDVQHE 509
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ GF+F+ + + +A Y R + + F T +++A+P PD A QVK+
Sbjct: 510 GLSWGFAFLEFSCHADAMLAYKRLQKPDVMFGHAERTAKVAFAEPIREPDPEIMA-QVKS 568
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDT 342
+++ +P + + ++ELF+ +GEV ++V+ S ++D+GF+ ++ +A+ V
Sbjct: 569 VFINGLPPHWDEDHVRELFKSYGEVVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGV 628
Query: 343 EKYEI-DGKSHL 353
K E+ DG S +
Sbjct: 629 NKSELGDGASKI 640
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 308
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 309 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 360
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L + G ++++RLM D SG+++G+AF++F K+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFDKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDG 349
E++G
Sbjct: 394 MNGKELEG 401
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 239 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 290
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 133 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 192
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 193 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 252
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 253 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 311
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 312 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 363
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 154/252 (61%), Gaps = 13/252 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ ++ E++ GK I +S NRLF+G++PK+ T+ +EF KV + G+ +
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT-GLWEGLTDV 276
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 277 ILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEV 336
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
A +VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+K
Sbjct: 337 MA-KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVK 389
Query: 338 AVKDTEKYEIDG 349
A+++ +++G
Sbjct: 390 AMEEMNGKDLEG 401
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 239 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 290
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 139 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 198
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 199 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 258
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 259 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 317
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 318 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 369
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 308
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 309 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 360
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 239 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 290
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RL D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLTMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 239 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 290
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 167/301 (55%), Gaps = 16/301 (5%)
Query: 64 QSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDL 123
Q+A + + D VEE E+ S + +L E+F+GGL +DA EED+
Sbjct: 476 QAAAQDTGEKDRARVEEHERMVMSDMAKNRQLKKEL--------EIFVGGLNRDAVEEDI 527
Query: 124 RDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183
R + +GDV +VRL KD + +KGFAFV F +KE +A+ E+ + ++GK + S
Sbjct: 528 RSVFGQVGDVVDVRLHKDLLTNRNKGFAFVKFATKEQVSRALAEMKNPMIRGKRCGIAAS 587
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNPSRNRGFSFVLY--YNN 240
E + LF+GN+ WT++ +K + D G GV+++ L+ D QN ++RGF+F+ + + +
Sbjct: 588 EDNDTLFLGNICNTWTKEAIKKRLLDYGIEGVQSLTLVPDTQNEGQSRGFAFLEFSCHAD 647
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
A + R + +A F T +++A+P PD A QVK++++ +P +++K
Sbjct: 648 AMLAFKRLQQPDAMFGHPERTAKVAFAEPIKEPDAEVMA-QVKSVFIDGLPPYWDEDRVK 706
Query: 301 ELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEI--DGKSHLHFP 356
+ F+ +G + +VV+ S + DFGF++++ +AL ++ T E+ DGKS +
Sbjct: 707 DRFKAYGVIERVVLASNMSSAKRNDFGFVNFSTHEAALACIEATNNTELGDDGKSKVKVR 766
Query: 357 V 357
V
Sbjct: 767 V 767
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 149/249 (59%), Gaps = 13/249 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F SK+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMN- 392
Query: 342 TEKYEIDGK 350
E++GK
Sbjct: 393 ----EMNGK 397
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 144 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 203
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 204 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 263
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 264 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 322
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 323 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 374
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F K+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 149/249 (59%), Gaps = 13/249 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F SK+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMN- 392
Query: 342 TEKYEIDGK 350
E++GK
Sbjct: 393 ----EMNGK 397
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 148/249 (59%), Gaps = 13/249 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMN- 392
Query: 342 TEKYEIDGK 350
E++GK
Sbjct: 393 ----EMNGK 397
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 135 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 194
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 195 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 254
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 255 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 313
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 314 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 365
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F K+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 149/249 (59%), Gaps = 13/249 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F SK+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMN- 392
Query: 342 TEKYEIDGK 350
E++GK
Sbjct: 393 ----EMNGK 397
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 151/250 (60%), Gaps = 8/250 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L E G ++++RLM D SG ++G+AF++F +KE
Sbjct: 156 AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEA 215
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 216 AQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 275
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 335
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ ++ + E +++ F + G + +V +D+ F+H+ +R A+KA+
Sbjct: 336 -KVKVLFVRNLANSVTEEILEKAFGQFGNLERV------KKLKDYAFVHFNDRDGAVKAL 388
Query: 340 KDTEKYEIDG 349
+ E++G
Sbjct: 389 TEMNGKELEG 398
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 149/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF+++ +K+ A+
Sbjct: 163 PGIGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 222
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ + E++ GK + +S NRLF+G++PKN T + + V G++ + L
Sbjct: 223 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQDVILYH 282
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD A +
Sbjct: 283 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMA-K 341
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+ + + E +++ F + G++ +V +D+ F+H+ ER +A++A++
Sbjct: 342 VKVLFVRKLATAVTEELLEKTFSQFGKLERV------KKLKDYAFVHFEERDAAVQAMEG 395
Query: 342 TEKYEIDG 349
E+ G
Sbjct: 396 MNGKELGG 403
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 146/242 (60%), Gaps = 13/242 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ S E++ GK + +S NRLF+G++PKN T+ +EF KV + G+ +
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT-GLTEGLVDV 279
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 280 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 339
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+K
Sbjct: 340 MA-KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVK 392
Query: 338 AV 339
A+
Sbjct: 393 AM 394
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 146/242 (60%), Gaps = 13/242 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ S E++ GK + +S NRLF+G++PKN T+ +EF KV + G+ +
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT-GLTEGLVDV 279
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 280 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 339
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+K
Sbjct: 340 MA-KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVK 392
Query: 338 AV 339
A+
Sbjct: 393 AM 394
>gi|224133750|ref|XP_002327671.1| predicted protein [Populus trichocarpa]
gi|222836756|gb|EEE75149.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 143/237 (60%), Gaps = 6/237 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL +DA+EEDLR + E IG+V EVRL K+ + +KG+AFV F SKE K+A+ E
Sbjct: 22 EIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFASKEHVKRALSE 81
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
+ + ++GK + SE + LF+GN+ WT++ R+ ++D G GVE I ++ D Q+
Sbjct: 82 MKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVSDAQHE 141
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
R+RGF+F+ + + +A Y R + + F T +++A+P PD A QVK
Sbjct: 142 GRSRGFAFLEFACHADAMLAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEIMA-QVKT 200
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAV 339
+++ +P + ++++E + +GE+ +VV+ S ++DFGF+ ++ A+ +
Sbjct: 201 IFLDGLPPHWDEDRVRECLKGYGEIVRVVLARNMSTAKRKDFGFVDFSTHDDAVACI 257
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 143/245 (58%), Gaps = 9/245 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L LCE G ++EVR+M D SG ++G+AFV+F +K+ AK A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGQIYEVRMMMDF-SGNNRGYAFVTFSNKQEAKAAM 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 115 KQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKVTEGVVDVIVYPSAA 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D A+ VK
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-VKI 233
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
LYV+N+ T+ E I++ F EV +V RD+ F+H+A+R A+ A+K+
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKEVERV------KKIRDYAFVHFAQREDAIHAMKELNG 287
Query: 345 YEIDG 349
+DG
Sbjct: 288 KVVDG 292
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 150/253 (59%), Gaps = 14/253 (5%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F K+
Sbjct: 162 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDA 221
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP---GVET 216
A +A+ + E++ GK + +S NRLF+G++PKN T + ++ED G G++
Sbjct: 222 AAEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRES---ILEDFGKVTEGLQE 278
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
+ L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD
Sbjct: 279 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPD 338
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
A +VK L+V+ + + E +++ F G++ +V +D+ F+H+ +R +A+
Sbjct: 339 VMA-KVKVLFVRKLATPVTEELLEKTFSAFGKLERV------KKLKDYAFVHFEDRDAAV 391
Query: 337 KAVKDTEKYEIDG 349
KA+ + E+ G
Sbjct: 392 KAMSEMNGKELGG 404
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 149/248 (60%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D S ++G+AFV+F +KE A+
Sbjct: 165 PTVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLSSLNRGYAFVTFCAKEAAQ 224
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 225 EAVKLCNNYEIRPGKHIGACISVANNRLFVGSIPKSKTKEQIVEEFSKVTDGLNDVILYH 284
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ + ++ A +R+++++ K+ G T+ WADP PD A +
Sbjct: 285 QPDDKKKNRGFCFLEFEDHKTAAQARRRLMSGKVKVWGILVTVEWADPIEDPDPEVMA-K 343
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ ++ + E +++ F G++ +V +D+ FIH+ ER A+KA+ +
Sbjct: 344 VKVLFVRNLANSVTEEILEKSFSAFGKLERV------KKLKDYAFIHFEEREGAVKALDE 397
Query: 342 TEKYEIDG 349
E++G
Sbjct: 398 MNGKELEG 405
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ L +EE L G + V+ +KD +AF+ F +E A KA+DE+
Sbjct: 347 LFVRNLANSVTEEILEKSFSAFGKLERVKKLKD--------YAFIHFEEREGAVKALDEM 398
Query: 169 HSKELKGKTI 178
+ KEL+G+ I
Sbjct: 399 NGKELEGEPI 408
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 146/242 (60%), Gaps = 13/242 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ S E++ GK + +S NRLF+G++PKN T+ +EF KV + G+ +
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT-GLTEGLVDV 178
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 179 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 238
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+K
Sbjct: 239 MA-KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVK 291
Query: 338 AV 339
A+
Sbjct: 292 AM 293
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 146/242 (60%), Gaps = 13/242 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 138 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 197
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ S E++ GK + +S NRLF+G++PKN T+ +EF KV + G+ +
Sbjct: 198 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT-GLTEGLVDV 256
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 257 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 316
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+K
Sbjct: 317 MA-KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVK 369
Query: 338 AV 339
A+
Sbjct: 370 AM 371
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 149/243 (61%), Gaps = 8/243 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLF 189
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +
Sbjct: 190 VRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKD 243
Query: 347 IDG 349
++G
Sbjct: 244 LEG 246
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 149/243 (61%), Gaps = 8/243 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLF 189
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +
Sbjct: 190 VRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKD 243
Query: 347 IDG 349
++G
Sbjct: 244 LEG 246
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 149/243 (61%), Gaps = 8/243 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLF 189
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +
Sbjct: 190 VRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKD 243
Query: 347 IDG 349
++G
Sbjct: 244 LEG 246
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 151/257 (58%), Gaps = 8/257 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EV++GGL KD +EEDL+ L E G+V EVRLM++ ++G+++G+AFV + S AK+A +E
Sbjct: 53 EVYVGGLDKDTTEEDLKPLFEKAGEVVEVRLMRNPQTGKNRGYAFVRYSSAAMAKRAAEE 112
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + E++G+ SE + L +GN+ K+W ++ + ++ + +E + L++DPQ
Sbjct: 113 LGTIEIRGRECTAKPSEENDTLHLGNINKSWKKEMVMETLKSLCIERIEELTLMEDPQVE 172
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + + +A + + + +A F D + ++WA P PD SQVK+
Sbjct: 173 GLNRGFAFIEFSTHKDALEAFRKLQQPDAIFGAD-RSAKVAWAQPLYEPDED-TMSQVKS 230
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKDT 342
++V +P ++E F ++GE+ ++V+ + ++DFGF+++ ER +AL +
Sbjct: 231 VFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDAL 290
Query: 343 EKYE-IDGKSHLHFPVF 358
E IDG + F F
Sbjct: 291 NNTEIIDGDIKVPFSFF 307
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 149/251 (59%), Gaps = 14/251 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F K+ A
Sbjct: 163 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAA 222
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP---GVETIE 218
+A+ + E++ GK + +S NRLF+G++PKN T + ++ED G G++ +
Sbjct: 223 EAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRES---ILEDFGKVTEGLQEVI 279
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD
Sbjct: 280 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPDVM 339
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
A +VK L+V+ + + E +++ F G++ +V +D+ F+H+ +R +A+KA
Sbjct: 340 A-KVKVLFVRKLAIPVTEELLEKTFSAFGKLERV------KKLKDYAFVHFEDRDAAVKA 392
Query: 339 VKDTEKYEIDG 349
+ + E+ G
Sbjct: 393 MAEMNGKELGG 403
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 138/244 (56%), Gaps = 8/244 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG +P+D E++L + E G V+E+RLM D ++G+AFV + + AKK++
Sbjct: 31 GCEIFIGKIPRDCFEDELVPIVEKAGPVYEMRLMMDHSGSMNRGYAFVVYCKAQDAKKSV 90
Query: 166 DELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L+ E+ KG+TI +S RLF+G +PK T++ R+ +E V GV I +
Sbjct: 91 KLLNEYEIRKGRTIGVCMSVDNCRLFVGGIPKCLTKENIREEMEKVTDGVADIIMYPAAS 150
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K++N+ +L + + WA+P+ D A+ VK
Sbjct: 151 DKSKNRGFAFVEYASHRAAAMARRKLINSRVRLWNHVVAVDWAEPELEVDEETMAT-VKI 209
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
LYV+N+ T+ ++ + F H V +V RD+ F+H+ RS AL A+K
Sbjct: 210 LYVRNLMLTTTEAQLNKAFSHHAPVERV------KKIRDYAFVHFNSRSGALTAMKAMNG 263
Query: 345 YEID 348
+D
Sbjct: 264 SVLD 267
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D E++L + E IG ++EVRLM D SG ++G+AFV ++SK A+
Sbjct: 43 PPRGCEVFIGKIPRDLFEDELVPVFEKIGPIYEVRLMMDF-SGNNRGYAFVVYQSKSAAR 101
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+ I +L++ E++ G+ I S RLFIG +PK +E R + + V + +
Sbjct: 102 QCIKQLNNYEIRQGRMIGVCSSVDNCRLFIGGIPKTIKREEIRSEMAKITEHVVDVIVYP 161
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKML-NANFKLDGNTPTISWADPKSTPDHSAAAS 280
+ ++NRGF+FV Y N+ A +R+K++ N N +L G+ + WA+P+ D
Sbjct: 162 SASDKTKNRGFAFVEYTNHRAAAMARRKLMNNNNVELWGHKIAVDWAEPEIEVDEE-IMD 220
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
QVK +YV+N+ +T+ E ++E+FQ V +V RD+ FIH+ + A A+
Sbjct: 221 QVKIVYVRNLLLSTTEESLREIFQSIARVERV------KKIRDYAFIHFTSKEDAHMAIT 274
Query: 341 DTEKYEIDGKS 351
IDG +
Sbjct: 275 LKNGQIIDGST 285
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 140/233 (60%), Gaps = 8/233 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 353
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + A
Sbjct: 124 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITFCGKEAA 181
Query: 244 DYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302
+ + + + + IS A+ + L+V +IP N + E I E
Sbjct: 182 QEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKTKENILEE 227
Query: 303 FQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKA 338
F + E + V++ P K R F F+ Y + SA +A
Sbjct: 228 FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 267
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 140/233 (60%), Gaps = 8/233 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 353
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + A
Sbjct: 124 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITFCGKEAA 181
Query: 244 DYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302
+ + + + + IS A+ + L+V +IP N + E I E
Sbjct: 182 QEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKTKENILEE 227
Query: 303 FQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKA 338
F + E + V++ P K R F F+ Y + SA +A
Sbjct: 228 FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 267
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 140/233 (60%), Gaps = 8/233 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 353
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + A
Sbjct: 124 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITFCGKEAA 181
Query: 244 DYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302
+ + + + + IS A+ + L+V +IP N + E I E
Sbjct: 182 QEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKTKENILEE 227
Query: 303 FQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKA 338
F + E + V++ P K R F F+ Y + SA +A
Sbjct: 228 FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 267
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 140/233 (60%), Gaps = 8/233 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 353
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + A
Sbjct: 124 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITFCGKEAA 181
Query: 244 DYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302
+ + + + + IS A+ + L+V +IP N + E I E
Sbjct: 182 QEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKTKENILEE 227
Query: 303 FQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKA 338
F + E + V++ P K R F F+ Y + SA +A
Sbjct: 228 FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 267
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 140/233 (60%), Gaps = 8/233 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 353
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + A
Sbjct: 124 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITFCGKEAA 181
Query: 244 DYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302
+ + + + + IS A+ + L+V +IP N + E I E
Sbjct: 182 QEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKTKENILEE 227
Query: 303 FQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKA 338
F + E + V++ P K R F F+ Y + SA +A
Sbjct: 228 FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 267
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 150/251 (59%), Gaps = 9/251 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE-SGESKGFAFVSFRSKE 159
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F +K+
Sbjct: 158 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLLSGQNRGYAFITFCNKD 217
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
A +A+ + E++ GK + +S NRLF+G++PKN T + + V G+ +
Sbjct: 218 AALEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFSKVTEGLMEVI 277
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 278 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVDEPDPEIM 337
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
A +VK L+V+N+ + E +++ F + G++ +V +D+ F+H+ +R +A+KA
Sbjct: 338 A-KVKVLFVRNLATPVTEELLEKTFSQFGKLERV------KKLKDYAFVHFEDRDAAVKA 390
Query: 339 VKDTEKYEIDG 349
+++ E++G
Sbjct: 391 MQEMNCKELEG 401
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 253 ANFKLDGNTPTISWADPKSTPDHSAAASQVKA-LYVKNIPDNTSTEKIKELFQRHGEV-- 309
++ LD T + P +S A + ++V IP + +++ LF++ G +
Sbjct: 133 TSYTLDVTTGQRKYGGPPPDEVYSRAQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWD 192
Query: 310 TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+++M P SG+ R + FI + + +AL+AVK + YEI +L + V
Sbjct: 193 LRLMMDPLLSGQNRGYAFITFCNKDAALEAVKLCDNYEIRSGKYLGVCISV 243
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 143/249 (57%), Gaps = 9/249 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+PP G EVF+G +P+D E++L + E G ++EVRLM D +G+++G+AFV + SK+ A
Sbjct: 52 IPPRGCEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDF-NGQNRGYAFVVYTSKDDA 110
Query: 162 KKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
K+ + L++ E+ KGK I S RLF+G +PK +DE + V V + +
Sbjct: 111 KRCVKTLNNYEIRKGKCIGVCSSVDNCRLFVGGIPKKVKKDEIMAEVSKVTDNVVDVIVY 170
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
Q+ ++NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D
Sbjct: 171 PSAQDKTKNRGFAFVEYISHRDAAMARRKLMTGKIQLWGHQIAVDWAEPEQEVDQE-IMD 229
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
QVK LY +N+ +T+ E I++ F + GEV +V +D+ FIH+ + A A++
Sbjct: 230 QVKVLYARNLLLSTTEETIEQAFSKFGEVERV------KKIKDYCFIHFRTKEQARDAME 283
Query: 341 DTEKYEIDG 349
+ E+DG
Sbjct: 284 AMNETELDG 292
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 148/250 (59%), Gaps = 7/250 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL +DA EED++ + E IG+V EVRL K+ S ++KG+AFV F +KE A +A+ E
Sbjct: 327 EIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHASRALSE 386
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE N LF+GN+ WT++ ++ ++D G GV I L+ +PQ+
Sbjct: 387 MKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHE 446
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+RGF+F+ + + +A Y R + + F T +++A+P PD A QVK+
Sbjct: 447 GLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMA-QVKS 505
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDT 342
++V +P + ++++E F+ +GE+ ++V+ S ++DFGF+ + +AL +
Sbjct: 506 VFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDSV 565
Query: 343 EKYEI-DGKS 351
E+ DG S
Sbjct: 566 NNTELCDGNS 575
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 140/233 (60%), Gaps = 8/233 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 146
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 147 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 205
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 206 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 252
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 23/161 (14%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + C
Sbjct: 23 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITF----CG 76
Query: 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV--KALYVKNIPDNTSTEKIKE 301
+ Q+ + KL + H V L+V +IP N + E I E
Sbjct: 77 KEAAQEAV----KLCDSYEI-------RPGKHLGVCISVANNRLFVGSIPKNKTKENILE 125
Query: 302 LFQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKA 338
F + E + V++ P K R F F+ Y + SA +A
Sbjct: 126 EFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 166
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 152/299 (50%), Gaps = 56/299 (18%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D SG ++G+AF++F ++E A+
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 163 KAIDELHSKELK------------------------------------------------ 174
+A+ EL + E+K
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTGKLNDYEIRK 275
Query: 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
GK I ++S +RLF+GN+PKN D+ + PG+ + + P + +NRGF F
Sbjct: 276 GKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYSSPDDKKKNRGFCF 335
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
+ Y ++ A +++++ K+ G + WADP+ PD S+V+ LYV+N+ +
Sbjct: 336 LEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSKVRVLYVRNLTQDC 394
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353
S EK+KE F+++G++ +V +D+ FIH+ +R +A+KA+ + E+ G SH+
Sbjct: 395 SEEKLKESFEQYGKIERV------KKIKDYAFIHFEDRDNAVKAMNELNGKEMGG-SHI 446
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D SEE L++ E G + V+ +KD +AF+ F ++ A KA++EL
Sbjct: 385 LYVRNLTQDCSEEKLKESFEQYGKIERVKKIKD--------YAFIHFEDRDNAVKAMNEL 436
Query: 169 HSKELKGKTIRCSLSE 184
+ KE+ G I SL++
Sbjct: 437 NGKEMGGSHIEVSLAK 452
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 140/233 (60%), Gaps = 8/233 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 111 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 170
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 171 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 230
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 231 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 289
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 290 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 336
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 23/161 (14%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + A
Sbjct: 107 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITFCGKEAA 164
Query: 244 DYSRQKMLNANFKLDGN--TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKE 301
+ K+ ++ G IS A+ + L+V +IP N + E I E
Sbjct: 165 QEA-VKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKTKENILE 209
Query: 302 LFQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKA 338
F + E + V++ P K R F F+ Y + SA +A
Sbjct: 210 EFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 250
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 148/250 (59%), Gaps = 7/250 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL +DA EED++ + E IG+V EVRL K+ S ++KG+AFV F +KE A +A+ E
Sbjct: 327 EIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHASRALSE 386
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE N LF+GN+ WT++ ++ ++D G GV I L+ +PQ+
Sbjct: 387 MKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHE 446
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+RGF+F+ + + +A Y R + + F T +++A+P PD A QVK+
Sbjct: 447 GLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMA-QVKS 505
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDT 342
++V +P + ++++E F+ +GE+ ++V+ S ++DFGF+ + +AL +
Sbjct: 506 VFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDSV 565
Query: 343 EKYEI-DGKS 351
E+ DG S
Sbjct: 566 NNTELCDGNS 575
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 150/251 (59%), Gaps = 11/251 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGES---KGFAFVSFRSKE 159
P G+E+F+G +P+D E++L L E G ++++RLM D +G + +G+AFV+F +KE
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLTGLNRGYAFVTFCTKE 217
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
A++A ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ +
Sbjct: 218 AAQEAAKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVI 277
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
L P + +NRGF F Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 278 LYHQPDDKKKNRGFCFQEYEDHKAAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVM 337
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
A +VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA
Sbjct: 338 A-KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKA 390
Query: 339 VKDTEKYEIDG 349
+++ +++G
Sbjct: 391 MEEMNGKDLEG 401
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 151/256 (58%), Gaps = 23/256 (8%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
GEDE++ P+GSEVF G +PKD E++L L E G ++++RLM D +G ++
Sbjct: 151 GEDERNA--------PSGSEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPMTGFNR 202
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTED----EF 203
G+ F++F K A +A+ +L + ++K GK+I+ ++S RLF+GN+PK+ ++D EF
Sbjct: 203 GYCFITFCDKPGALEAVKQLDNYQIKPGKSIKVNISVANQRLFVGNIPKSKSKDEIMEEF 262
Query: 204 RKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263
K ED+ + I + +NRGF+F+ Y ++ A +++K+ + K+ G
Sbjct: 263 SKKTEDL---TDVIIYRSAEKENQKNRGFAFLEYESHKAASTAKRKLSSGRTKVWGCDVI 319
Query: 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD 323
+ WADP PD S S+VK LYV+N+ + + + +KE F +G+V +V +D
Sbjct: 320 VDWADPIDDPD-SDTMSKVKVLYVRNLTSDVTEDTLKEKFGEYGKVERV------KKIKD 372
Query: 324 FGFIHYAERSSALKAV 339
+GFIH+ ER A+KA+
Sbjct: 373 YGFIHFEERDDAVKAM 388
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TK 311
+ LD T + P D A S + ++ IP + +++ LF++ G++ +
Sbjct: 133 GYSLDVTTGQRKYGGPPPGEDERNAPSGSE-VFCGKIPKDVFEDELIPLFEKCGKIWDLR 191
Query: 312 VVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID-GKS 351
++M P R + FI + ++ AL+AVK + Y+I GKS
Sbjct: 192 LMMDPMTGFNRGYCFITFCDKPGALEAVKQLDNYQIKPGKS 232
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 143/246 (58%), Gaps = 8/246 (3%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
NG EVF G +P+D E++L L E G ++++RLM D + ++G+AFV+F + E A++A
Sbjct: 173 NGCEVFCGKIPRDVYEDELIPLFEKCGTIWDLRLMMDPLTNLNRGYAFVTFTTTEAAQEA 232
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+++L+ E+K G+ ++ ++S RLF+GN+PK+ E + V G+ + + P
Sbjct: 233 VNQLNDLEMKGGRHLKINVSVPNLRLFVGNIPKSKGNVEIMEEFSKVTAGLAEVIIYSSP 292
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+ +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD+ S+VK
Sbjct: 293 DDRRKNRGFCFLEYDSHKSASLAKRRLSTGRVKIFGCDIIVDWADPQEEPDND-TMSRVK 351
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LYV+N+ + EK+KE F+ HG + +V +D+ F+H+ ER A++A+
Sbjct: 352 VLYVRNLTQEFTEEKLKEAFEAHGPIQRV------KKIKDYAFVHFEERDDAVQAMDALN 405
Query: 344 KYEIDG 349
+ + G
Sbjct: 406 GHTLYG 411
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 154/275 (56%), Gaps = 22/275 (8%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
VEEEE G E+ K + EVF+GGL +DA E+D+R + G++ EVR
Sbjct: 220 VEEEE-----AGMSERRKRMTM--------EVFVGGLHRDAKEDDVRAVFAKAGEITEVR 266
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN 197
++ + +G++KG+ FV +R AKKAI E + ++ GK R ++ +R+F+GN+ K
Sbjct: 267 MIMNPLAGKNKGYCFVRYRHAAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKK 326
Query: 198 WTEDEFRKVIEDVGP-GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256
W +++ K ++ +G ++++ L D NP NRGF+F+ + A + +K+ N
Sbjct: 327 WKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAF 386
Query: 257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV--- 313
G ++WA+P + PD QVK+++V IP + ++KE+F++HG++ VV
Sbjct: 387 GKGLNIRVAWAEPLNDPDEKDM--QVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSR 444
Query: 314 -MPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
MP K +RDF FI+Y R +A+ ++ +K E
Sbjct: 445 DMPSAK--RRDFAFINYITREAAISCLESFDKEEF 477
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 154/275 (56%), Gaps = 22/275 (8%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
VEEEE G E+ K + EVF+GGL +DA E+D+R + G++ EVR
Sbjct: 220 VEEEE-----AGMSERRKRMTM--------EVFVGGLHRDAKEDDVRAVFAKAGEITEVR 266
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN 197
++ + +G++KG+ FV +R AKKAI E + ++ GK R ++ +R+F+GN+ K
Sbjct: 267 MIMNPLAGKNKGYCFVRYRHAAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKK 326
Query: 198 WTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256
W +++ K ++ +G ++++ L D NP NRGF+F+ + A + +K+ N
Sbjct: 327 WKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAF 386
Query: 257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV--- 313
G ++WA+P + PD QVK+++V IP + ++KE+F++HG++ VV
Sbjct: 387 GKGLNIRVAWAEPLNDPDEKDM--QVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSR 444
Query: 314 -MPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
MP K +RDF FI+Y R +A+ ++ +K E
Sbjct: 445 DMPSAK--RRDFAFINYITREAAISCLESFDKEEF 477
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 148/256 (57%), Gaps = 15/256 (5%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F SK+
Sbjct: 161 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFINFCSKDA 220
Query: 161 AKKAIDELHSKELKG-KTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVE 215
A +A+ + E++ K + +S NRLF+G++PKN T D+F KV E G++
Sbjct: 221 AAEAVKLCDNYEIRSRKHLGVCISVANNRLFVGSIPKNKTRESILDDFSKVTE----GLQ 276
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ L P + NRGF F+ Y ++ A +R+ +++ + GN T+ WA+P + D
Sbjct: 277 EVILYHQPDDKETNRGFCFLEYEDHKSAAQARRCLMSGKVMVWGNPVTVEWANPVTERDT 336
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSA 335
A+Q K L+V+ + + + E + + F G++ +V +D+ F+H+ +R +A
Sbjct: 337 DVMANQAKVLFVRKLATSVTEELLVKTFSAFGKLERVYK------LKDYAFVHFEDRDAA 390
Query: 336 LKAVKDTEKYEIDGKS 351
+KA+ D E+ G++
Sbjct: 391 VKAMVDMNGKELGGEA 406
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
++V IP + +++ LF++ G + +++M P R + FI++ + +A +AVK
Sbjct: 169 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFINFCSKDAAAEAVKLC 228
Query: 343 EKYEIDGKSHLHFPVFV 359
+ YEI + HL + V
Sbjct: 229 DNYEIRSRKHLGVCISV 245
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 148/243 (60%), Gaps = 8/243 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRG F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 131 KKNRGSCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLF 189
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +
Sbjct: 190 VRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKD 243
Query: 347 IDG 349
++G
Sbjct: 244 LEG 246
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
KA+K +DG
Sbjct: 281 KAMKALNGKVLDG 293
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +++
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNRQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + SRNRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAM 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|255581424|ref|XP_002531520.1| RNA binding protein, putative [Ricinus communis]
gi|223528873|gb|EEF30874.1| RNA binding protein, putative [Ricinus communis]
Length = 841
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 149/250 (59%), Gaps = 7/250 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL ++A+EED+R + E IG+V EVRL ++ +SKG+AFV F +KE AK+++ E
Sbjct: 344 EIFVGGLDREATEEDVRRVFETIGEVVEVRLHRNLAMSKSKGYAFVKFANKEHAKRSLSE 403
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE + LF+GN+ WT++ R+ ++D G GVE I L+ D Q+
Sbjct: 404 MKNPVICGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITLVADVQHE 463
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
R+RGF+F+ + + +A Y R + + F T +++A+P PD A VK
Sbjct: 464 GRSRGFAFLEFSCHADAMHAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEVMA-HVKT 522
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDT 342
+++ +P + ++++E + +GE+ ++V+ S ++DFGF+ ++ +A+ ++
Sbjct: 523 VFLDGLPPHWDEDRVREQLRGYGEIMRIVLARNMSTAKRKDFGFVDFSSHEAAIACIERI 582
Query: 343 EKYEI-DGKS 351
E+ DG S
Sbjct: 583 NNAELGDGNS 592
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 144/245 (58%), Gaps = 9/245 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL +DA E+D+R + G++ EVR++ + +G++KG+ FV +R AKKAI E
Sbjct: 11 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 70
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
+ ++ GK R ++ +R+F+GN+ K W +++ K ++ +G ++++ L D NP
Sbjct: 71 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
NRGF+F+ + A + +K+ N G ++WA+P + PD QVK+++
Sbjct: 131 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDEKDM--QVKSIF 188
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVKDT 342
V IP + ++KE+F++HG++ VV MP K +RDF FI+Y R +A+ ++
Sbjct: 189 VDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAK--RRDFAFINYITREAAISCLESF 246
Query: 343 EKYEI 347
+K E
Sbjct: 247 DKEEF 251
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 77 HVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG--DVF 134
H + +K A G + A+P +F+G + K +ED+ + IG ++
Sbjct: 60 HAAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENID 119
Query: 135 EVRLMKDKESGES-KGFAFVSFRSKEFAKKAIDELHSKEL--KGKTIRCSLSETKN---- 187
V L D + +GFAF+ + A+ A +L K KG IR + +E N
Sbjct: 120 SVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDE 179
Query: 188 ------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241
+F+ +P +W + +++ + G +E++ L +D + R R F+F+ Y
Sbjct: 180 KDMQVKSIFVDGIPTSWDHAQLKEIFKKHGK-IESVVLSRDMPSAKR-RDFAFINYITRE 237
Query: 242 CA 243
A
Sbjct: 238 AA 239
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 153/257 (59%), Gaps = 10/257 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EV++GGL KD +EEDL+ L + G+V E+RLM++ ++G++KGFAF+ + S AK+A ++
Sbjct: 57 EVYVGGLDKDTTEEDLKSLFKKAGEVIEIRLMRNPQTGKNKGFAFIRYASAAMAKRATED 116
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
+ E++G+ SE + L +GN+ K+W ++ + ++ + +E + L++DPQ
Sbjct: 117 FETVEIRGRQCTAKPSEENDTLHLGNINKSWKKEMVLETLKSLSIESIEELTLMEDPQVE 176
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + + +A + + + +A F + + ++WA P PD SQVK+
Sbjct: 177 GVNRGFAFIEFSTHKDALDAFRKLQQPDAIFGTE-RSAKVAWAQPLYEPDED-TMSQVKS 234
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGKR-DFGFIHYAERSSALK---AV 339
++V +P ++E F ++GE+ ++V+ S KR DFGF++Y ER++AL A+
Sbjct: 235 VFVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNYMERNAALTCIDAL 294
Query: 340 KDTEKYEIDGKSHLHFP 356
+TE + D K +P
Sbjct: 295 NNTEIIDGDMKVLFSWP 311
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 154/255 (60%), Gaps = 12/255 (4%)
Query: 101 ALPP--NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
LPP GSE+F+G +PK+ E+++ L E G+V ++RLM D +G+++G+AF +F S
Sbjct: 163 TLPPPIQGSEIFVGKIPKEMYEDEIIPLLEQCGEVHDLRLMMDPLTGQNRGYAFAAFTSI 222
Query: 159 EFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
E A++A+ +L+ ++K + ++S K+RL++G++PKN T+DE + V G+ +
Sbjct: 223 EGAREAVKQLNGHKIKDNWQLSVNVSVPKSRLYVGSIPKNKTKDEILEEFAKVEKGLLDV 282
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHS 276
+I ++ RNRGF+F+ + ++ A +++K+ + K+ + WADP PD S
Sbjct: 283 -IIYKTEDKMRNRGFAFLEFDSHKAAASAKRKLASGRIKVWNQINVNVDWADPVIEPD-S 340
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
S+VK +Y++N+ T+ KIKE F ++GEV K +D+ F+H+ ER +A+
Sbjct: 341 DTMSKVKVVYIRNLSTETTEVKIKEDFGQYGEVEKA------KKMKDYCFVHFKERDAAV 394
Query: 337 KAVKDTEKYEIDGKS 351
KA+++ E +G +
Sbjct: 395 KAIEEMNGKEYEGTT 409
>gi|218199186|gb|EEC81613.1| hypothetical protein OsI_25123 [Oryza sativa Indica Group]
Length = 370
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 149/257 (57%), Gaps = 14/257 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL +DA E+D+R + G++ EVR++ + +G++KG+ FV +R AKKAI E
Sbjct: 11 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 70
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
+ ++ GK R ++ +R+F+GN+ K W +++ K ++ +G ++++ L D NP
Sbjct: 71 FGNAKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
NRGF+F+ + A + +K+ N ++WA+P + PD A QVK+++
Sbjct: 131 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKSLNIRVAWAEPLNDPDEKDA--QVKSIF 188
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVKDT 342
V IP + ++KE+F++HG++ VV MP K +RDF FI+Y R +A+ ++
Sbjct: 189 VDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAK--RRDFAFINYITREAAISCLESF 246
Query: 343 EK-----YEIDGKSHLH 354
+K Y + +H++
Sbjct: 247 DKEEFIRYPVQDYTHIY 263
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 77 HVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG--DVF 134
H + +K A G + A+P +F+G + K +ED+ + IG ++
Sbjct: 60 HAAQAKKAIAEFGNAKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENID 119
Query: 135 EVRLMKDKESGES-KGFAFVSFRSKEFAKKAIDELHSKELKGKT--IRCSLSETKN---- 187
V L D + +GFAF+ + A+ A +L K GK+ IR + +E N
Sbjct: 120 SVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKSLNIRVAWAEPLNDPDE 179
Query: 188 ------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+F+ +P +W + +++ + G +E++ L +D + R R F+F+ Y
Sbjct: 180 KDAQVKSIFVDGIPTSWDHAQLKEIFKKHGK-IESVVLSRDMPSAKR-RDFAFINY 233
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|357518111|ref|XP_003629344.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355523366|gb|AET03820.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 989
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 148/252 (58%), Gaps = 7/252 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL +D +EEDL+ + + IG+V EVRL K+ + +++G+A V F +KE AKKA+ E
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + ++GK S SE + LF+GN+ WT++ ++ ++D G GVE I L+ D Q+
Sbjct: 479 MKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHE 538
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+RGF+F+ + + +A Y R + F T +++A+P PD A QVK+
Sbjct: 539 GLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMA-QVKS 597
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP--GKSGKRDFGFIHYAERSSALKAVKDT 342
+++ +P + + ++E + +GE+ K+V+ S ++D GF+ ++ +AL V
Sbjct: 598 VFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGV 657
Query: 343 EKYEI-DGKSHL 353
K E+ DG S +
Sbjct: 658 NKSELGDGTSKI 669
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI GLP E+ +R+ + G++ ++ L + + + K FV F + E A +D +
Sbjct: 598 VFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGV 657
Query: 169 HSKELKGKTIRCSL 182
+ EL T + L
Sbjct: 658 NKSELGDGTSKIKL 671
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 143/237 (60%), Gaps = 13/237 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETIELIKD 222
S E++ GK + +S NRLF+G++PKN T+ +EF KV + G+ + L
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT-GLTEGLVDVILYHQ 145
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +V
Sbjct: 146 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KV 204
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
K L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 205 KVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 255
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 26/164 (15%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + C
Sbjct: 23 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITF----CG 76
Query: 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV--KALYVKNIPDNTSTEKIKE 301
+ Q+ + KL + H V L+V +IP N + E I E
Sbjct: 77 KEAAQEAV----KLCDSYEI-------RPGKHLGVCISVANNRLFVGSIPKNKTKENILE 125
Query: 302 LFQRHGEVTK----VVM---PPGKSGKRDFGFIHYAERSSALKA 338
F + +T+ V++ P K R F F+ Y + SA +A
Sbjct: 126 EFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 169
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 190/363 (52%), Gaps = 27/363 (7%)
Query: 16 DNYMEEMDDDVE------EQVEEDPEE-------EGGDGNFEENDDDEEYDHSKAGASEK 62
DN E+ D ++ EQ EEDP+E G+G E D ++A +
Sbjct: 136 DNSAEDKQDQLQQGQMDAEQEEEDPQEVIFEDSASVGEGQAATELKQGE-DRARATEEDD 194
Query: 63 DQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGS-----EVFIGGLPKD 117
Q+A ++N++ E+ A ++ +D+ + + N E+F+GGL ++
Sbjct: 195 GQAAAKSKNEEHRARAAEKHGQAAGEVKENEDERKVMSDMAKNRQRKKELEIFVGGLDRE 254
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
A EED+R + +GDV EVRL KD + ++KGFAFV F +KE +A+ E+ + + GK
Sbjct: 255 AVEEDIRKVFSQVGDVVEVRLHKDFSTSKNKGFAFVRFANKEQVARALAEMKNPMIHGKR 314
Query: 178 IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVL 236
+ SE + LF+ N+ WT++ +K + D G GV+++ L+ D QN ++RGF+F+
Sbjct: 315 CGVAASEDNDTLFLCNICNTWTKEAIKKRLLDYGVEGVQSLTLVPDTQNEGQSRGFAFLE 374
Query: 237 Y--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
+ + +A + R + +A F T +++A+P D A QVK++++ +P
Sbjct: 375 FSCHADAMLAFKRLQQPDALFGHPERTAKVAFAEPIKEADAEVMA-QVKSVFINGLPPYW 433
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEI--DGK 350
E++K F+ +G + +VV+ S + DFGF++++ AL ++ T E+ DGK
Sbjct: 434 DEERVKNRFKAYGLIERVVLARNMSSAKRNDFGFVNFSTHEEALACIEATNNTELGDDGK 493
Query: 351 SHL 353
+ L
Sbjct: 494 AKL 496
>gi|226506072|ref|NP_001146195.1| uncharacterized protein LOC100279765 [Zea mays]
gi|219886139|gb|ACL53444.1| unknown [Zea mays]
Length = 287
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 95/124 (76%), Gaps = 2/124 (1%)
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYV 287
RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWAD K+ + + SQVK+LYV
Sbjct: 8 RNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNA-SEATSTSQVKSLYV 66
Query: 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDTEKYE 346
KN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H+ ERS +KA+K+TE+YE
Sbjct: 67 KNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKERSMVMKALKNTERYE 126
Query: 347 IDGK 350
+DG+
Sbjct: 127 LDGQ 130
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+++ LPK ++E L+ L E +G++ +V ++ +SG + FV F+ + KA+
Sbjct: 63 SLYVKNLPKTVTQEQLKKLFEHVGEITKV-VIPPAKSGHENRYGFVHFKERSMVMKALKN 121
Query: 168 LHSKELKGKTIRCS 181
EL G+ + CS
Sbjct: 122 TERYELDGQLLDCS 135
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEVIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|3309585|gb|AAC26114.1| putative RNA binding protein RNP [Dictyostelium discoideum]
Length = 551
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 123/196 (62%), Gaps = 8/196 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
+E+F GG+ K +EE+L ++ D V E+RLMKDK +GESKGF FV F + +
Sbjct: 91 NNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRN 150
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
ID+L+ K +KGK I LSE K +LFIGN+PK+ ++++F + + G+E+I+ + P
Sbjct: 151 VIDKLNGKSIKGKIIEVKLSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSP 210
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPKST---PDHSAA 278
P++NRGF+F+ Y ++ AD +R+ + + KL T T++W+DP T P +
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 279 ASQ-VKALYVKNIPDN 293
++ +KA+Y++N+P N
Sbjct: 271 ENKEIKAIYIRNLPLN 286
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +++
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNRQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + +RNRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKMLDG 293
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +++
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNRQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + +RNRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKMLDG 293
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 52 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 110
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 111 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 170
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 171 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 230
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 231 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 283
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 284 EAMKALNGKMLDG 296
>gi|224097146|ref|XP_002310851.1| predicted protein [Populus trichocarpa]
gi|222853754|gb|EEE91301.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 142/237 (59%), Gaps = 6/237 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL +DA+EEDLR + E IG+V EVRL K+ + +KG+AFV F +K K+A+ E
Sbjct: 27 EIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFANKGHVKRALSE 86
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
+ + ++GK + SE + LF+GN+ WT++ R+ ++D G GVE I ++ D Q+
Sbjct: 87 MKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVPDAQHE 146
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
R+RGF+F+ + + +A Y R + + F T +++++P PD A QVK
Sbjct: 147 GRSRGFAFLEFACHTDAMLAYKRLQKPDVVFGHPERTAKVAFSEPIREPDPEIMA-QVKT 205
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAV 339
+++ +P + + ++E + +GE+ ++V+ S ++DFGF+ ++ +A+ +
Sbjct: 206 IFLDGLPPHWDEDHVRECVKGYGEIVRIVLARNMSTAKRKDFGFVDFSTHEAAVACI 262
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 139/236 (58%), Gaps = 4/236 (1%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+E+FIGGL K A EED+R + E +G+V EVRLM + ++G++KG+AF+ F AK+A+
Sbjct: 331 TEIFIGGLDKSAREEDIRKVFEEVGEVLEVRLMMNSKTGKNKGYAFLRFALASDAKRALA 390
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQN 225
+ E+ GK + E + +F+GN+ KNW ++ K+++++G ++ + ++ DP N
Sbjct: 391 KYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSN 450
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
RNRGF+F+ N A + +K+ + ++WA+P + PD +VK +
Sbjct: 451 IERNRGFAFLELETNKDAQLAYKKLQKKDVFGKHQNIKVAWAEPLNEPDEDEML-KVKTV 509
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAV 339
Y + IP + EK+++ F++ GE+ VV+ S ++DF F+ Y R +AL+ +
Sbjct: 510 YAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECI 565
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE- 167
V+ +P EE +RD + G++ V L ++ S + K FAFV + ++E A + I+
Sbjct: 509 VYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESF 568
Query: 168 ----LHSKELKGKTIRCSLSE 184
LH E K K ++ SL++
Sbjct: 569 SREPLHDAECKVK-VKVSLAK 588
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D SG ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FSGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFNNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE +G ++E+R+M D +G ++G+AFV+F +++
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKMGKIYEMRMMMD-FNGNNRGYAFVTFSNRQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + SRNRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSSREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 143/249 (57%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + IG ++E+RLM D SG ++GFAF+ F ++ A +AI
Sbjct: 41 GTEIFVGKLPRDVFEDELYRIFSTIGPIYELRLMMDF-SGSNRGFAFIQFAHRQDANRAI 99
Query: 166 DELHSKELKGKT-IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ + EL+ + I S RLFIG +PK + +E + +E + GV + +
Sbjct: 100 QLMDNYELRPRHHIGVVKSIDNCRLFIGGIPKTKSREEIQGEMERLTEGVTKVIVYSSIT 159
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y N+ A +R+K++ +L G + WA+P++ + SQV
Sbjct: 160 DKTKNRGFAFVEYINHRAASKARRKLIPDRIQLWGKEIAVDWAEPENEIEED-VMSQVTV 218
Query: 285 LYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + ++ELF R + V K+ M RDF FIH++ R A KA+++
Sbjct: 219 LYVRNLSLTTTEQVLRELFNRVSDDNVQKLKM------MRDFAFIHFSSREKAEKAMRNM 272
Query: 343 EKYEIDGKS 351
EI+G +
Sbjct: 273 NHTEINGTT 281
>gi|357161949|ref|XP_003579258.1| PREDICTED: uncharacterized protein LOC100834061 [Brachypodium
distachyon]
Length = 668
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 145/253 (57%), Gaps = 16/253 (6%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+EVF+GGLP+ A+E LR++ P G++ ++R+MKD ++G SKGF FV F +E A A
Sbjct: 69 GTEVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYTAK 127
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK---- 221
+ + EL+GK + LS ++ LF GN+ K W+ +EF ++I V +++L
Sbjct: 128 RQKNGIELQGKRLAVDLSLDQDTLFFGNLCKEWSVEEFEELIHKTFKDVISVDLATASNL 187
Query: 222 DPQNPSR--NRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAA 278
D R NRGF+FV + ++ A + +F L G P I+WA+ +S D +
Sbjct: 188 DSSTSKRRLNRGFAFVRFSSHGAAARVLRIGSRTDFLLGGVLHPAINWAERESNVD-AGE 246
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
+++K +V N+P N + + +K+LF R GEV +V + + G+ GFIH+ RS A
Sbjct: 247 MAKIKTAFVGNLPANVNEDYLKKLFGRFGEVVRVAV--SRKGEYPVGFIHFGSRSELDNA 304
Query: 339 VKDTEKYEIDGKS 351
+K E+DGK+
Sbjct: 305 IK-----EMDGKT 312
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 141/247 (57%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L LCE G ++EVR+M D SG ++G+AFV+F +K+ AK A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDF-SGNNRGYAFVTFSNKQEAKAAM 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKVTDGVLDVIVYPSAA 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D A+ VK
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-VKI 233
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E I++ F + G V +V RD+ F+H+ +R A+ A+
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKQGAVERV------KKIRDYAFVHFTQREDAIHAMNAL 287
Query: 343 EKYEIDG 349
+DG
Sbjct: 288 NGKVVDG 294
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 12/251 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G LP+D E++L + E +G ++E+RLM D +G+++G+ FV + S A+
Sbjct: 84 PPRGCEVFVGKLPRDCYEDELVPVFEKVGTIYELRLMMD-YNGQNRGYGFVIYLSSRDAQ 142
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ L++ E+ K + I S RLFIG +PK +DE + I V V + +
Sbjct: 143 RAVRTLNNYEIRKSRLIGVCHSVDNCRLFIGGIPKKVKKDEILEEISKVTDSVVNVIVYP 202
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S+NRGF+FV Y + A +R+K++N +L G+ + WA+P+ D Q
Sbjct: 203 SATDKSKNRGFAFVEYNCHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQDIDED-IMDQ 261
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSS---ALKA 338
VK LY++N+ NT+ E I+ LF++ EV +V +D+ F+H+ R AL++
Sbjct: 262 VKVLYIRNLQLNTTEETIENLFKKFAEVERV------KKIKDYCFVHFVTREGARLALES 315
Query: 339 VKDTEKYEIDG 349
VK IDG
Sbjct: 316 VKANNGESIDG 326
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 140/248 (56%), Gaps = 9/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++++RLM D + G+++G+AFV + K AK
Sbjct: 66 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYQMRLMMDFD-GKNRGYAFVMYTHKREAK 124
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E++ G+ + S RLFIG +PK DE + I V GV + +
Sbjct: 125 RAVRELDNHEIRPGRPLGVCCSVDNCRLFIGGIPKMKKRDEILEEISKVTEGVLDVIVYA 184
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+F+ Y ++ A +R+K++ +L G + WA+P+ D +
Sbjct: 185 SATDKTKNRGFAFIEYESHRAAAMARRKLMPGRIQLWGQQIAVDWAEPEMDVDEDVMET- 243
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ TS E I++ F + G V +V RD+ F+H+ R A++A+
Sbjct: 244 VKILYVRNLMIKTSEETIRKTFSQFGCVERV------KKIRDYAFVHFTSREDAIRAMNS 297
Query: 342 TEKYEIDG 349
E++G
Sbjct: 298 LNGTELEG 305
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 150/258 (58%), Gaps = 17/258 (6%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDGKSHLH 354
+A+K ++GK+ H
Sbjct: 281 EAMK-----ALNGKTTYH 293
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALHGKVLDG 293
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALHGKVLDG 293
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 142/250 (56%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+F+G +P+D E++L + +G ++E+RLM D SG ++G+AFV + +KE AK
Sbjct: 71 PGRGCEIFVGKIPRDLFEDELVPVFMSVGLIYEMRLMMDF-SGNNRGYAFVMYTNKEDAK 129
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KAI +L++ E+ KG+ + S RLF+G +PKN DE ++ V GV + +
Sbjct: 130 KAIKQLNNYEIRKGRYLGVCASVDNCRLFVGGIPKNKKRDEILHEMQKVTEGVVDVIVYP 189
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y N+ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 190 SATDKTKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDEDIMKT- 248
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ NT+ E I++ F + G V +V RD+ F+H+ R AL A+
Sbjct: 249 VKVLYVRNLMLNTTEETIEKEFNSLKEGSVERV------KKIRDYAFVHFVTREDALYAL 302
Query: 340 KDTEKYEIDG 349
+ +DG
Sbjct: 303 NAMNGHNVDG 312
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 143/247 (57%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ A+ A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSNKQEARAAM 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTDGVVDVIVYPSAA 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D A+ VK
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-VKI 233
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E I++ F + G V +V RD+ F+H+ +R A+ A+K
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKPGAVERV------KKIRDYAFVHFTQREDAINAMKAL 287
Query: 343 EKYEIDG 349
+DG
Sbjct: 288 NGKVVDG 294
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 143/247 (57%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ A+ A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSNKQEARAAM 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTDGVVDVIVYPSAA 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D A+ VK
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-VKI 233
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E I++ F + G V +V RD+ F+H+ +R A+ A+K
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKPGAVERV------KKIRDYAFVHFTQREDAINAMKAL 287
Query: 343 EKYEIDG 349
+DG
Sbjct: 288 NGKVVDG 294
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 146/253 (57%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E + V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRDDAI 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 146/253 (57%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E + V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRDDAI 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 145/253 (57%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++EVR+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E +++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEETLEKEFNSIKPGSVERV------KKIRDYAFVHFNNRDDAV 280
Query: 337 KAVKDTEKYEIDG 349
A+K +DG
Sbjct: 281 NAMKALNGKVLDG 293
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 145/253 (57%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++EVR+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E +++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEETLEKEFNSIKPGSVERV------KKIRDYAFVHFNNRDDAV 280
Query: 337 KAVKDTEKYEIDG 349
A+K +DG
Sbjct: 281 NAMKALNGKVLDG 293
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 143/245 (58%), Gaps = 12/245 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVFIG LP+D E++L L E +G ++E+RLM D +G ++G+AF ++ ++E A+
Sbjct: 61 PQRGCEVFIGKLPRDFFEDELVPLLETVGPIYELRLMMDF-AGSNRGYAFATYTNREDAR 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL KE++ GK I S RLF+G +P+ T ++ + V GV + L
Sbjct: 120 RAVRELDEKEIRRGKRIGVCKSTDNCRLFVGGIPRTKTREDVFSEMSRVTEGVVNVILYT 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTPTISWADPKSTPDHSAAAS 280
+ +RNRGF+FV Y ++ A +R+KM+ KL +G+ + WA+P+ D S
Sbjct: 180 SVMDKTRNRGFAFVEYTDHKTAAVARRKMIPGKMKLWNGHDVAVDWAEPEPQVDED-TMS 238
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
+V LYV+N+ +T+ ++++E+F +G +V+KV RDF FIHY R A A
Sbjct: 239 KVMVLYVRNLVLSTTEDELREVFSLNGSLKVSKV------KKIRDFAFIHYRSREEATTA 292
Query: 339 VKDTE 343
++ +
Sbjct: 293 LEAMQ 297
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRKDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 42 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 100
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 101 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 160
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 161 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 220
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 221 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 273
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 274 EAMKALNGKVLDG 286
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRKDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 23 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 81
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 82 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 141
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 142 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 201
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 202 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 254
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 255 EAMKALNGKVLDG 267
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 143/249 (57%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E+DL L E +G ++E RLM + SGE++G+AFV + +E A++AI
Sbjct: 76 GCEVFVGKIPRDMYEDDLVPLFEKVGRIYEFRLMMEF-SGENRGYAFVMYTDREAAQRAI 134
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L + E++ GK I +S RLFIG++PK+ +DE + ++ V GV +
Sbjct: 135 QMLDNYEVRPGKFIGVCVSLDNCRLFIGSIPKDKRKDEVIEEMKKVTDGVVDAIVYPSTT 194
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K++ F+L G++ + WA+P+ D +V+
Sbjct: 195 DKNKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHSIQVDWAEPEKDVDEE-VMQRVRV 253
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ TS E +++ F R G V +V D+ FIHY RS AL A+
Sbjct: 254 LYVRNLMLETSEETLRQEFSRFKPGCVERV------KKLSDYAFIHYRSRSDALTALSLM 307
Query: 343 EKYEIDGKS 351
IDG +
Sbjct: 308 NGAHIDGAA 316
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 57 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 115
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 116 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 175
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 176 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 235
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 236 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 288
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 289 EAMKALNGKVLDG 301
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 142/252 (56%), Gaps = 10/252 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D E++L + E +G ++ RLM D SG ++G+ F + ++E +
Sbjct: 38 PPRGCEVFIGKIPRDCFEDELVPIFETVGRIYMFRLMMD-FSGCNRGYGFCIYTNREDTR 96
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL S E++ GK + LS RLF+G +PKN T+DE + V GV+ + +
Sbjct: 97 RAVAELDSYEIRRGKMLGVCLSVDNCRLFVGGIPKNKTKDEIMAEMLKVTDGVKDVIVYP 156
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y N+ A +R+K++ L G+ + WA+P+ D S+
Sbjct: 157 SVADKTKNRGFAFVEYENHKAAAMARRKLIPGRIHLWGHQIAVDWAEPEREVDED-IMSK 215
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYV+N+ +T+ E +++ R V K RD+ F+H+ +R A A++
Sbjct: 216 VRILYVRNLMLHTTEEALRDHCNRAIGAVDAVERVKKI--RDYAFVHFRDRLQATAALR- 272
Query: 342 TEKYEIDGKSHL 353
++DGKS L
Sbjct: 273 ----QLDGKSFL 280
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 23 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 81
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 82 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 141
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 142 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 201
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 202 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 254
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 255 EAMKALNGKVLDG 267
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 23 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 81
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 82 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 141
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 142 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 201
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 202 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 254
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 255 EAMKALNGKVLDG 267
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 145/252 (57%), Gaps = 8/252 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G +VF+G +P+ E++L L E G V++ RLM D SG+++G+ FV++ +KE
Sbjct: 156 AEPGTGCQVFVGRIPRFVFEDELVPLLEEAGVVWDFRLMMDPMSGQNRGYGFVTYTNKEA 215
Query: 161 AKKAIDELHSKELKGKT-IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A + + L + E++ K + +S++ RLF+G++PK T+DE + + + G++ + +
Sbjct: 216 ATECVKMLDNYEIRPKKFLGVCVSQSNCRLFVGSIPKTKTKDEIFEEFDGITQGLKDVII 275
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
++ +NRGF F+ Y ++ A +R+++ + K NT ++ WADP P
Sbjct: 276 YLQTEDKMKNRGFCFLEYTDHKAASQARRRLSSVKVKAFNNTVSVDWADPVEEPSDE-IM 334
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
S+VK LY+KN+ + E + F +GEV +V +D+ F+H+ ER +A+KA+
Sbjct: 335 SKVKVLYIKNLSMKATEEIVMATFSAYGEVERV------KKIKDYAFVHFKERDNAMKAL 388
Query: 340 KDTEKYEIDGKS 351
++ ++G++
Sbjct: 389 EELNGLNLEGEA 400
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I L A+EE + G+V V+ +KD +AFV F+ ++ A KA++EL
Sbjct: 340 LYIKNLSMKATEEIVMATFSAYGEVERVKKIKD--------YAFVHFKERDNAMKALEEL 391
Query: 169 HSKELKGKTIRCSLSE 184
+ L+G+ I SL++
Sbjct: 392 NGLNLEGEAIEISLAK 407
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 57 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 115
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 116 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 175
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 176 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 235
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 236 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 288
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 289 EAMKALNGKVLDG 301
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 57 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 115
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 116 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 175
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 176 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 235
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 236 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 288
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 289 EAMKALNGKVLDG 301
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 143/252 (56%), Gaps = 11/252 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+F+G LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 AAPERGCEIFVGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMRKVTEGVVEVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I+ F + G V +V RD+ F+H+ R A+
Sbjct: 229 S-VKILYVRNLMLSTSEETIEREFNNIKPGAVERV------KKIRDYAFVHFNNREDAVG 281
Query: 338 AVKDTEKYEIDG 349
A+K +DG
Sbjct: 282 AMKALNGKVLDG 293
>gi|66812128|ref|XP_640243.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|37693753|gb|AAQ98887.1| RNA-binding protein [Dictyostelium discoideum]
gi|60468259|gb|EAL66268.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 551
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 122/196 (62%), Gaps = 8/196 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
+E+F GG+ K +EE+L ++ D V E+RLMKDK +GESKGF FV F + +
Sbjct: 91 NNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRN 150
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
ID+L+ K +KGK I SE K +LFIGN+PK+ ++++F + + G+E+I+ + P
Sbjct: 151 VIDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSP 210
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPKST---PDHSAA 278
P++NRGF+F+ Y ++ AD +R+ + + KL T T++W+DP T P +
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 279 ASQ-VKALYVKNIPDN 293
++ +KA+Y++N+P N
Sbjct: 271 ENKEIKAIYIRNLPLN 286
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 132/211 (62%), Gaps = 2/211 (0%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV 312
VK L+V+N+ + + E +++ F + G++ +V
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV 367
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 143/250 (57%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSTKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y + A +R+K+L +L G+ + WA+P+ D A+
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMAT- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E I++ F + G V +V RD+ F+H+++R A+ A+
Sbjct: 230 VKILYVRNLMLPTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFSQREDAINAM 283
Query: 340 KDTEKYEIDG 349
IDG
Sbjct: 284 NALNGKVIDG 293
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 32 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 90
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 91 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 150
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 151 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 210
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 211 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRKDAV 263
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 264 EAMKALNGKVLDG 276
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 143/250 (57%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSTKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y + A +R+K+L +L G+ + WA+P+ D A+
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMAT- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E I++ F + G V +V RD+ F+H+++R A+ A+
Sbjct: 230 VKILYVRNLMLPTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFSQREDAINAM 283
Query: 340 KDTEKYEIDG 349
IDG
Sbjct: 284 NALNGKVIDG 293
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEIIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 144/252 (57%), Gaps = 14/252 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E IG ++E+RLM D +G ++G+AFV + S++ AK
Sbjct: 55 PSRGCEVFVGKIPRDLFEDELVPVFESIGKIYELRLMMDF-NGNNRGYAFVMYTSRDDAK 113
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ +L++ E+ KG+ + S RLF+G +PKN + E + + V GV + +
Sbjct: 114 RAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKVTEGVVDVIVYP 173
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D S
Sbjct: 174 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEVEVDEDIMKS- 232
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALK 337
VK LYV+N+ T+ E +KE F+ V+ PG + RD+ F+H+ R A+K
Sbjct: 233 VKVLYVRNLLLTTTEESLKESFEN-------VVSPGSVERVKKIRDYAFVHFKTREEAVK 285
Query: 338 AVKDTEKYEIDG 349
A+ T IDG
Sbjct: 286 AMNATNGQLIDG 297
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 143/252 (56%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 38 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQ 96
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 97 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 156
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 157 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQR 215
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 216 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 269
Query: 340 KDTEKYEIDGKS 351
IDG S
Sbjct: 270 SVMNGKCIDGAS 281
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A+ A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVHAMKAL 286
Query: 343 EKYEIDG 349
+DG
Sbjct: 287 NGKVLDG 293
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A++A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKPGAVERV------KKIRDYAFVHFNKREDAVEAMKAL 286
Query: 343 EKYEIDG 349
+DG
Sbjct: 287 NGKVLDG 293
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 143/247 (57%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E I+ V GV + +
Sbjct: 114 RQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEIKKVTDGVVDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D S VK
Sbjct: 174 DKAKNRGFAFVEYGSHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED-TMSAVKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ R A++A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFSSIKPGSVERV------KKIRDYAFVHFNNREDAVEAMKVL 286
Query: 343 EKYEIDG 349
+DG
Sbjct: 287 NGKMVDG 293
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A+ A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVHAMKAL 286
Query: 343 EKYEIDG 349
+DG
Sbjct: 287 NGKVLDG 293
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 146/253 (57%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L +CE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPICEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED-T 226
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 227 MSLVKILYVRNLMLSTSEEMIEKEFNNVKPGAVERV------KKIRDYAFVHFSHREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 137/232 (59%), Gaps = 9/232 (3%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VF+G +P+D E++L L E G ++++RLM D SG+++G+A ++F KE A++A+
Sbjct: 226 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYALITFCGKEAAQEAVKLC 285
Query: 169 HSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 286 DSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK 345
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYV 287
+NR F F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+V
Sbjct: 346 KNR-FCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLFV 403
Query: 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 404 RNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 449
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 41/240 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+A+ +F+G +P++ EDE + E GP + + L+ D
Sbjct: 221 EAV---------------------KLVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMD 258
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQ 281
P + +NRG++ + + A + + + + + IS A+ +
Sbjct: 259 PLS-GQNRGYALITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR----------- 306
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVM--PPGKSGKRDFGFIHYAERSSALKA 338
L+V +IP N + E I E F + E + V++ P K F F+ Y + SA +A
Sbjct: 307 ---LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRFCFLEYEDHKSAAQA 363
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 39/173 (22%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + C
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITF----CG----- 215
Query: 249 KMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
AA VK ++V IP + +++ LF++ G
Sbjct: 216 --------------------------KEAAQEAVKLVFVGKIPRDLYEDELVPLFEKAGP 249
Query: 309 V--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ +++M P R + I + + +A +AVK + YEI HL + V
Sbjct: 250 IWDLRLMMDPLSGQNRGYALITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISV 302
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 143/252 (56%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G +FE+RLM D + G+++G+AFV F K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESAGRIFEMRLMMDFD-GKNRGYAFVMFTKKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 QAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ TS + IK++F + G V +V RD+ F+H++ R A++++
Sbjct: 245 VKILYVRNLMIETSEDTIKKIFGQFNPGCVERV------KKIRDYAFVHFSSREDAVQSM 298
Query: 340 KDTEKYEIDGKS 351
+ E++G
Sbjct: 299 RKLNGTELEGSC 310
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 114 KTLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A++A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFNKREHAVEAMKAL 286
Query: 343 EKYEIDG 349
+DG
Sbjct: 287 NGKVLDG 293
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 144/253 (56%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE G ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKFGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCPSVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEETIEKEFDSIKPGSVERV------KKIRDYAFVHFNNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
A+K +DG
Sbjct: 281 NAMKALNGKVLDG 293
>gi|212274617|ref|NP_001130787.1| uncharacterized protein LOC100191891 [Zea mays]
gi|194690114|gb|ACF79141.1| unknown [Zea mays]
gi|414868618|tpg|DAA47175.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 605
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 153/269 (56%), Gaps = 21/269 (7%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
G DE+D+ + G+EVF+GGLP+ A+E LR++ G++ + R+MKD +SG SK
Sbjct: 7 GFDEQDRRTE------KGTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKD-QSGHSK 59
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208
G+ FV F +++A A + + E++GK + LS ++ +F GN+ K WT +EF ++I
Sbjct: 60 GYGFVRFAKRDYANTAKRQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIH 119
Query: 209 DVGPGVETIEL-----IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTP 262
V +++L + + NRGF FV + ++A A + +F L D P
Sbjct: 120 KAFKDVVSVDLAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHP 179
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
I+WAD +S D A ++K+ ++ N+P++ + E +++LF + GEV +V + + G+
Sbjct: 180 AINWADKESHLDPDEMA-KMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SRKGQC 236
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGKS 351
F+H+A+RS A++ E+DGK+
Sbjct: 237 PVAFVHFAKRSELENAIE-----EMDGKT 260
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
FIG LP+D +EE LR L G+V V + + + AFV F + + AI+E+
Sbjct: 201 AFIGNLPEDVNEEYLRKLFGQFGEVVRVAISRKGQCP----VAFVHFAKRSELENAIEEM 256
Query: 169 HSKELKG 175
K ++G
Sbjct: 257 DGKTVRG 263
>gi|414868617|tpg|DAA47174.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 609
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 153/269 (56%), Gaps = 21/269 (7%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
G DE+D+ + G+EVF+GGLP+ A+E LR++ G++ + R+MKD +SG SK
Sbjct: 7 GFDEQDRRTE------KGTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKD-QSGHSK 59
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208
G+ FV F +++A A + + E++GK + LS ++ +F GN+ K WT +EF ++I
Sbjct: 60 GYGFVRFAKRDYANTAKRQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIH 119
Query: 209 DVGPGVETIEL-----IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTP 262
V +++L + + NRGF FV + ++A A + +F L D P
Sbjct: 120 KAFKDVVSVDLAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHP 179
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
I+WAD +S D A ++K+ ++ N+P++ + E +++LF + GEV +V + + G+
Sbjct: 180 AINWADKESHLDPDEMA-KMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SRKGQC 236
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGKS 351
F+H+A+RS A++ E+DGK+
Sbjct: 237 PVAFVHFAKRSELENAIE-----EMDGKT 260
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
FIG LP+D +EE LR L G+V V + + + AFV F + + AI+E+
Sbjct: 201 AFIGNLPEDVNEEYLRKLFGQFGEVVRVAISRKGQCP----VAFVHFAKRSELENAIEEM 256
Query: 169 HSKELKG 175
K ++G
Sbjct: 257 DGKTVRG 263
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 148/254 (58%), Gaps = 11/254 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+FIGGL + EEDL+ E +G+V EVRL+KD + +++G FV F +K+ AKKA+ E
Sbjct: 153 EIFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSE 212
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE + LFIGN+ WT++ K +++ GVE I L++DP++
Sbjct: 213 MKNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAINKKLKEYNLEGVENITLVQDPRHE 272
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+RGF F+ + +++A + R + + F T +++++P PD A +VK+
Sbjct: 273 GLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMA-KVKS 331
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P +++++ FQ +GE+ +V MP K ++DFGF+ + +A+ ++
Sbjct: 332 VFIDGLPPYWDEDRVRKHFQGYGEIKRVTLARNMPAAK--RKDFGFVDFMTHEAAIACIE 389
Query: 341 DTEKYE-IDGKSHL 353
D K + +DG S +
Sbjct: 390 DVNKKDLVDGNSKI 403
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 142/252 (56%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK
Sbjct: 72 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVTYTHKHEAK 130
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 131 RAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 190
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 191 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 249
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A++A+
Sbjct: 250 VKILYVRNLMIETTEEAIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVRAM 303
Query: 340 KDTEKYEIDGKS 351
E++G
Sbjct: 304 NSLNGTELEGSC 315
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 141/247 (57%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEAAQLAI 118
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L++ E++ GK I +S RLFIG +PK ++E +++V GV + +
Sbjct: 119 RILNNFEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKNVTEGVVDVIVYPSAT 178
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK
Sbjct: 179 DKSKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKV 237
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNRDDAMTAMSVM 291
Query: 343 EKYEIDG 349
IDG
Sbjct: 292 NGKYIDG 298
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 140/247 (56%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ AK A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSNKQEAKTAM 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK DE ++ V GV + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKIKKRDEILTEMKKVTDGVVDVIVYPSAA 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G + WA+P+ D A+ VK
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGYPIAVDWAEPEVEVDDDTMAT-VKI 233
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E I+ F + G V +V RD+ F+H+ +R A+ A+
Sbjct: 234 LYVRNLMLQTTEETIEREFNSLKPGAVERV------KKIRDYAFVHFCQREDAINAMNAL 287
Query: 343 EKYEIDG 349
++G
Sbjct: 288 NGKLVEG 294
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 142/252 (56%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHAM 298
Query: 340 KDTEKYEIDGKS 351
+ E++G
Sbjct: 299 NNLNGVELEGSC 310
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 142/252 (56%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHAM 298
Query: 340 KDTEKYEIDGKS 351
+ E++G
Sbjct: 299 NNLNGVELEGSC 310
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 144/251 (57%), Gaps = 12/251 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G LP+D +E++L + E +G ++E+R+M D +G ++G+AFV+F KE AK
Sbjct: 80 PPKGCEVFVGKLPRDVTEQELVPVFERVGRIYEMRMMMD-FNGSNRGYAFVTFCDKEQAK 138
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A +L+ E++ G+ I S RL++ +P++ + ++ R I + GV + L
Sbjct: 139 RACQQLNGFEIRRGRFIGVLKSVDNCRLYVSGIPRDKSREDVRSEIARLTDGVVDVILYP 198
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S+NRGF+F+ Y ++ A +R+K+ L GN T+ WA+P+ D A Q
Sbjct: 199 SAMDKSKNRGFAFIEYESHRSAAMARRKLAPNRLTLWGNEITVDWAEPERDVDEETMA-Q 257
Query: 282 VKALYVKNIPDNTSTEKIKELFQR---HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
VK LYV+N+ +T+ E ++E+ + G V +V RD+ F+H++ R A++
Sbjct: 258 VKKLYVRNLMMHTTEEHLREVVEAISGTGTVERV------KKIRDYAFVHFSRREDAIRV 311
Query: 339 VKDTEKYEIDG 349
+ ++DG
Sbjct: 312 QEALNGQDLDG 322
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 142/250 (56%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK
Sbjct: 72 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVTYTHKHEAK 130
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 131 RAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 190
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 191 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 249
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A++A+
Sbjct: 250 VKILYVRNLMIETTEEAIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVRAM 303
Query: 340 KDTEKYEIDG 349
E++G
Sbjct: 304 NSLNGTELEG 313
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 139/236 (58%), Gaps = 5/236 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+E+FIGGL DA EED+R + +G++ E+RL+ + ++G++K FAF+ + S AKKA++
Sbjct: 499 TEIFIGGLSTDAREEDIRKVFGAVGEIVELRLVTNSKTGKNKRFAFLRYSSAADAKKALE 558
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQN 225
+ E+ GK + E + +F+GN+ K WT + K+++++G ++ + ++ DP N
Sbjct: 559 KYAKVEICGKQCAVAPVEGNDTIFLGNIDKKWTNGDVIKLLQEIGIEKIDKVIVMTDPSN 618
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
RNRGF+FV + A + +K+ + N ++WA+P S PD +VK++
Sbjct: 619 VGRNRGFAFVELETHKDAQIAFKKLHKKDLGKLQNI-KVAWAEPLSEPDEEELL-KVKSV 676
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAV 339
Y + +P + EK++ F + GE+ +V+ S ++DF FI+++ R +AL +
Sbjct: 677 YAEYLPPSWDEEKLRSYFTKFGEIENIVLSRNLHSSRRKDFAFINFSTREAALACI 732
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 147/254 (57%), Gaps = 11/254 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+FIGGL + EEDL+ E +G+V EVRL+KD + +++G FV F +K+ AKKA+ E
Sbjct: 153 EIFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSE 212
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE + LFIGN+ WT++ K +++ GVE I L++DP++
Sbjct: 213 MKNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAITKKLKEYNLEGVENITLVQDPRHE 272
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+RGF F+ + +++A + R + + F T +++++P PD A +VK+
Sbjct: 273 GLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMA-KVKS 331
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P +++++ FQ +GE+ +V MP K ++DFGF+ + +A+ +
Sbjct: 332 VFIDGLPPYWDEDRVRKHFQGYGEIERVTLARNMPAAK--RKDFGFVDFLTHEAAIACID 389
Query: 341 DTEKYE-IDGKSHL 353
D K + +DG S +
Sbjct: 390 DINKKDLVDGNSKI 403
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 142/251 (56%), Gaps = 15/251 (5%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLFIG +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFIGGIPKTKKREEILSEVKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
+S VK LYV+N+ +TS E I+ F K D+ F+H+++R A++A
Sbjct: 228 SS-VKILYVRNLMLSTSEEIIEREFNNI-----------KPEIWDYAFVHFSKREDAVEA 275
Query: 339 VKDTEKYEIDG 349
+K +DG
Sbjct: 276 MKALNGKVLDG 286
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 142/252 (56%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHAM 298
Query: 340 KDTEKYEIDGKS 351
+ E++G
Sbjct: 299 NNLNGVELEGSC 310
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 142/252 (56%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHAM 298
Query: 340 KDTEKYEIDGKS 351
+ E++G
Sbjct: 299 NNLNGVELEGSC 310
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 142/252 (56%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHAM 298
Query: 340 KDTEKYEIDGKS 351
+ E++G
Sbjct: 299 NNLNGVELEGSC 310
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 150/256 (58%), Gaps = 20/256 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G +++ RLM + +G ++G+AFV+F +++ A+
Sbjct: 169 PGPGHEVFAGKIPKDMFEDELVPLFENCGPIWDFRLMMEPLTGLNRGYAFVTFTTRDAAQ 228
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ +L + E+K + ++ ++S RLF+GN+PK+ T +EF K+ E + V
Sbjct: 229 EAVKQLDNYEIKPTRRLKVNVSVANVRLFVGNIPKSKTREEIIEEFSKLTESL-TDVIVY 287
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+ D + +NRGF+F+ Y ++ A +++K+ N ++ + WADP+ PD
Sbjct: 288 NVADDAK--KKNRGFAFLEYDSHKSASVAKRKLGNGRQRVWNCDIIVDWADPQEEPDEE- 344
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S+VK LYV+N+ + + ++I+E F+ G+V +V +D+GF+H+ ER AL
Sbjct: 345 TMSKVKVLYVRNLKQDVTEDQIREKFEVFGKVERV------KKIKDYGFVHFEEREHALA 398
Query: 338 AVKDTEKYEIDGKSHL 353
A+KD ++GK L
Sbjct: 399 AMKD-----LNGKQEL 409
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 146/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 142/250 (56%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 81 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 139
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 140 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 199
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 200 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 258
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ TS E I+++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 259 VKILYVRNLMMETSEEAIRQIFSQFNPGCVERV------KKIRDYAFVHFTSRDDAVLAM 312
Query: 340 KDTEKYEIDG 349
+ E++G
Sbjct: 313 DNLNGTEVEG 322
>gi|359489218|ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
gi|297734640|emb|CBI16691.3| unnamed protein product [Vitis vinifera]
Length = 812
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E+DLR + +G+V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 233 EVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 292
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G VE + L++D N
Sbjct: 293 LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 352
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D T +S+AD P A QVK
Sbjct: 353 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVD-RTAKVSFADSFIDPGDEIMA-QVKT 410
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P + ++++EL +++GE+ K+ MP K ++DFGF+ + +A+ K
Sbjct: 411 VFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAK 468
Query: 341 DTEKYEI 347
E+
Sbjct: 469 SINNAEL 475
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 34/209 (16%)
Query: 144 SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEF 203
+GE + A + A DE H + K + R +F+G + K+ TED+
Sbjct: 202 AGELQEHAEMV--------DAEDEEHHEVFKERRKRKEFE-----VFVGGLDKDATEDDL 248
Query: 204 RKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263
RKV VG V + L+ +PQ +N+GF+F+ + A + ++ N P
Sbjct: 249 RKVFSQVGE-VTEVRLMMNPQT-KKNKGFAFLRFATVEQAKRAVTELKN---------PV 297
Query: 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-----EVTKVVMPPGK 318
++ TP + L++ NI + E +KE + +G ++T V +
Sbjct: 298 VNGKQCGVTPSQDS-----DTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 352
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEI 347
R F F+ ++ RS A+ A K +K ++
Sbjct: 353 GMNRGFAFLEFSSRSDAMDAFKRLQKRDV 381
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 140/252 (55%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSRDDAVHAM 298
Query: 340 KDTEKYEIDGKS 351
E++G
Sbjct: 299 NSLNGTELEGSC 310
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 7/248 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP E++IG +P DA E++L L + G ++E+RLM D SG ++G+AF+S+ +KE A
Sbjct: 31 PPQDCEIYIGKIPHDALEDELIPLLQTCGKIYELRLMIDPASGHNRGYAFLSYTTKEAAN 90
Query: 163 KAIDELHSKELKGKTIRCSLSETKN-RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+ + H ++ + T N RLFI +PK ++E + G+ + +
Sbjct: 91 QCVRRYHGYSIRKDKPLTVIHSTPNVRLFISPIPKYMNKEEIYNKFSKLSDGLTEVIVYP 150
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
DP + RGF+F+ Y ++ A Y+R+K++ L G + WA+ P ++
Sbjct: 151 DPDAKDKIRGFAFLEYVDHKAATYARRKLITDTVSLSGKVINVEWAESSKEPKDHVVGNK 210
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK +Y NI ++ + + + F ++G + ++ D+ FI +A R SALKA++
Sbjct: 211 VKEVYCGNIAEHITEDTLNTAFLQYGSIERI------KKLHDYAFICFASRESALKAIEG 264
Query: 342 TEKYEIDG 349
I+G
Sbjct: 265 VRGTVING 272
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 140/246 (56%), Gaps = 11/246 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L L E G ++E RLM + SGE++G+AFV + +KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPLFERAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I S RLFIG++P+ +++ + ++ V GV + + +
Sbjct: 120 MLNNYEIRQGKFIGVCASLDNCRLFIGSIPQEKRKEDILEEMKKVTEGVMDVIVCPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVTYESHRAAAMARRKLIPGTFQLWGRTIKVDWADPEKEVDEE-TMQKVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F R+ G V +V RD+ F+H+ R A+ A+ +
Sbjct: 239 YVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMSEMN 292
Query: 344 KYEIDG 349
IDG
Sbjct: 293 GRLIDG 298
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 146/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 37 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 95
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 96 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 155
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 156 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 214
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 215 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 268
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 269 KALNGKVLDG 278
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 142/252 (56%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 69 PPRGCEVFVGKIPRDVYEDELVPVFETAGRIYEMRLMMDFD-GKNRGYAFVMYTQKYEAK 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 128 RAVKELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A++A+
Sbjct: 247 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTSREDAVQAM 300
Query: 340 KDTEKYEIDGKS 351
+ E++G
Sbjct: 301 NNLNNTELEGSC 312
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 140/252 (55%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAM 298
Query: 340 KDTEKYEIDGKS 351
E++G
Sbjct: 299 NSLNGTELEGSC 310
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 142/250 (56%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 78 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 136
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 137 RAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 196
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 197 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 255
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ TS E +++ F + G V +V RD+ F+H+A R A+ A+
Sbjct: 256 VKILYVRNLMIETSEEILRQTFGQFNPGCVERV------KKIRDYAFVHFASRDDAVVAM 309
Query: 340 KDTEKYEIDG 349
+ EI+G
Sbjct: 310 DNLNGTEIEG 319
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 146/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 146/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 141/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L L E G ++E RLM + SGE++G+AFV + S+E A +AI
Sbjct: 72 GCEVFVGKVPRDMYEDELVPLFESAGRIYEFRLMMEF-SGENRGYAFVMYTSREEAVRAI 130
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L E++ G+ I +S RLFIG++P++ ++E + + V GV + +
Sbjct: 131 QMLDGYEVRPGRFIGVCVSLDNCRLFIGSIPRDRRKEEILEEMRKVTDGVVDVIVYPSSS 190
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +RNRGF+FV Y ++ A +R+K++ F+L G+ + WA+P+ + A +V+
Sbjct: 191 DRNRNRGFAFVEYESHKTAAMARRKLIPGTFQLWGHPIQVDWAEPEKDMEEE-AMQRVRV 249
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E ++ F R G V +V D+ F+H+ RS AL +
Sbjct: 250 LYVRNLMLDTTEETLRREFSRFKPGSVERV------KKLTDYAFVHFRSRSEALATLAVM 303
Query: 343 EKYEIDGKS 351
+IDG +
Sbjct: 304 NGVQIDGTT 312
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 146/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 140/250 (56%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSRDDAVHAM 298
Query: 340 KDTEKYEIDG 349
E++G
Sbjct: 299 NSLNGTELEG 308
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 142/250 (56%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 79 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 137
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 138 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 197
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 198 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 256
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E I+++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 257 VKILYVRNLMMETNEETIRQIFSQWNPGCVERV------KKIRDYAFVHFTSRDDAVLAM 310
Query: 340 KDTEKYEIDG 349
+ EI+G
Sbjct: 311 DNLNGTEIEG 320
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 146/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 140/250 (56%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAM 298
Query: 340 KDTEKYEIDG 349
E++G
Sbjct: 299 NSLNGTELEG 308
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKLGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 146/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGTVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKFIDGAS 300
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 146/297 (49%), Gaps = 60/297 (20%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF G +PKD E++L L E G ++++RLM D SG ++G+AFV+F ++E ++A+
Sbjct: 164 GCEVFCGKIPKDMYEDELIPLFESCGTIWDLRLMMDPMSGANRGYAFVTFTTREATQRAV 223
Query: 166 DE----------------------------------------------------LHSKEL 173
E L + E+
Sbjct: 224 QEHVINIPIDFGHKYAECDVATARRPAPGAAPRVSMAGVPTVITDLVYMCNVTPLDNHEI 283
Query: 174 K-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 232
K GKT+R +S RLF+GN+PK+ ++E + + G+ + + P + +NRGF
Sbjct: 284 KPGKTLRIKISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYSSPDDKKKNRGF 343
Query: 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPD 292
F+ Y ++ A +++++ K+ G + WADP+ PD S+VK LYV+N+
Sbjct: 344 CFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMSKVKVLYVRNLTQ 402
Query: 293 NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ E +KE F+R+G V +V +D+ F+H+ +R A+KA+++ + E+ G
Sbjct: 403 EITEEALKEEFERYGNVERV------KKIKDYAFVHFEDRDCAVKAMQEIDGKELGG 453
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L ++ +EE L++ E G+V V+ +KD +AFV F ++ A KA+ E+
Sbjct: 395 LYVRNLTQEITEEALKEEFERYGNVERVKKIKD--------YAFVHFEDRDCAVKAMQEI 446
Query: 169 HSKELKGKTIRCSLSE 184
KEL G + SL++
Sbjct: 447 DGKELGGARLEVSLAK 462
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 75 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 133
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 134 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 193
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 194 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 252
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 253 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 306
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 307 GKCIDGAS 314
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|255571057|ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
gi|223534154|gb|EEF35870.1| RNA binding protein, putative [Ricinus communis]
Length = 784
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 143/247 (57%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E+DLR + +G+V EVRLM + ++ ++KGFAF+ F + E AKKA+ E
Sbjct: 214 EVFVGGLDKDATEDDLRKVFTRVGEVTEVRLMMNPQTKKNKGFAFLRFSTVEQAKKAVTE 273
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G VE + L++D N
Sbjct: 274 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDVTLVEDSNNE 333
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D +S+AD P A QVK
Sbjct: 334 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFADSFIDPGDEIMA-QVKT 391
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
++V +P + ++++EL ++ GE+ K+ MP K ++DFGF+ + +A+ K
Sbjct: 392 VFVDGLPASWDEDRVRELLKKFGEIEKIELARNMPSAK--RKDFGFVTFDSHDAAVTCAK 449
Query: 341 DTEKYEI 347
E+
Sbjct: 450 SINNAEL 456
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 143/254 (56%), Gaps = 11/254 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K
Sbjct: 56 AHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNE 114
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 115 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 174
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D
Sbjct: 175 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 234
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+A R A+
Sbjct: 235 T-VKILYVRNLMIETTEDTIKKIFGQFNPGCVERV------KKIRDYAFVHFASREDAVH 287
Query: 338 AVKDTEKYEIDGKS 351
A+ + E++G
Sbjct: 288 AMNNLNGTELEGSC 301
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGSVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 143/249 (57%), Gaps = 11/249 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+EVF+G +P+D E++L + E G ++E+RLM D + G+++G+AFV F +K AK
Sbjct: 108 PPRGAEVFVGKIPRDVFEDELVPVFETAGRIYEMRLMMDFD-GKNRGYAFVMFTAKSDAK 166
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ +L++ E+ KG+ + S RLF+G +PK +D+ + V GV + +
Sbjct: 167 GAVKKLNNYEIRKGRMLGVCYSVDNCRLFVGGIPKTKKKDDIFAEMTKVTEGVTDVIVYP 226
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D Q
Sbjct: 227 SASDKTKNRGFAFVEYDSHRAAAMARRKLIPGRIQLWGHPIAVDWAEPEQDVDDEIMG-Q 285
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ + ++ +F + G V +V RD+ F+H++ R + ++A+
Sbjct: 286 VKVLYVRNLMLDTTEDTLQNVFSQFKPGSVERV------KKIRDYAFVHFSTREACIEAM 339
Query: 340 KDTEKYEID 348
+ ID
Sbjct: 340 EKINGTHID 348
>gi|449432380|ref|XP_004133977.1| PREDICTED: uncharacterized protein LOC101208921 [Cucumis sativus]
Length = 788
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 202/366 (55%), Gaps = 27/366 (7%)
Query: 8 EDRVDLEEDNYMEEMDDDV-----EEQVEEDPEEE--GGDGNFEENDDDEEYDHSKAGAS 60
++R+DLE+++ E D+D E+++E++ +E G+G E+N DEE D +
Sbjct: 126 DERLDLEDNDPESEPDEDGGFEYDEKEIEQEDVQEVVDGEGEPEDNVGDEEGDMVEEDVE 185
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSE--VFIGGLPKDA 118
+ + E DDD E+ E A + + ++D+H +++ E VF+GGL KD
Sbjct: 186 DAQEDLEGE--DDDQQGGEDHEH--AGMVDADEDEHHEVVKERRKRKEFEVFVGGLDKDV 241
Query: 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
EEDL+ + +G+V EVRLM + ++ ++KGFAF+ F + E AK+A+ EL + + GK
Sbjct: 242 KEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKNPVINGKQC 301
Query: 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNPSRNRGFSFVLY 237
+ S+ + LF+GN+ K W +D ++ ++ G VE + L++D N NRGF+F+ +
Sbjct: 302 GVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSNRGFAFLEF 361
Query: 238 --YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
++A + R + + F +D +S+AD P A QVK ++V ++P +
Sbjct: 362 SSRSDAMDAFKRLQKRDVVFGVD-RPAKVSFADSFIDPGDEIMA-QVKTVFVDSLPASWD 419
Query: 296 TEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSAL---KAVKDTEKYEID 348
E ++ L +++GE+ K+ MP K ++DFGF+ + +A+ K++ ++E E D
Sbjct: 420 EEFVRGLLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVSCAKSINNSELGEGD 477
Query: 349 GKSHLH 354
K+ +
Sbjct: 478 NKAKVR 483
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 287 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 345
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 346 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 405
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 406 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 464
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 465 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 518
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 519 GKCIDGAS 526
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 145/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKLGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 139/252 (55%), Gaps = 11/252 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + IG ++E+RLM D SG ++G+AFV + ++E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDF-SGSNRGYAFVMYTTRED 110
Query: 161 AKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
KKA+ +L++ E+ KG+ + S RLF+G +PKN ++E + V V + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y N+ A +R+K++ +L G+ + WA+P+ D
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
VK LYV+N+ +T+ E I + F + G V +V RDF FIH+ R AL
Sbjct: 231 G-VKILYVRNLMLHTTEETIAKEFNAFKEGSVERV------KKLRDFAFIHFFTREDALN 283
Query: 338 AVKDTEKYEIDG 349
A+ + +DG
Sbjct: 284 AMNAMDDPLLDG 295
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSIMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNRDDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 139/252 (55%), Gaps = 11/252 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + IG ++E+RLM D SG ++G+AFV + ++E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDF-SGSNRGYAFVMYTTRED 110
Query: 161 AKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
KKA+ +L++ E+ KG+ + S RLF+G +PKN ++E + V V + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y N+ A +R+K++ +L G+ + WA+P+ D
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
VK LYV+N+ +T+ E I + F + G V +V RDF FIH+ R AL
Sbjct: 231 G-VKILYVRNLMLHTTEETIAKEFNAFKEGSVERV------KKLRDFAFIHFFTREDALN 283
Query: 338 AVKDTEKYEIDG 349
A+ + +DG
Sbjct: 284 AMNAMDDPLLDG 295
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 140/246 (56%), Gaps = 11/246 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E+ L L G ++E RLM + SGE++G+AFV + +KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIR 119
Query: 167 ELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E+ +GK I +S RLFIG++P+ ++E + ++ V GV + + +
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV+Y ++ A +R+K++ F+L G+T ++WA P+ D +VK L
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEE-TMQKVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F R+ G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMSVMN 292
Query: 344 KYEIDG 349
IDG
Sbjct: 293 GRLIDG 298
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKRKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGTVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 139/247 (56%), Gaps = 10/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E++IG +P + E+ L L E +G ++++RLM D +G+++G+AF++F K FA +A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 166 DELHSKE-LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ E L GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVVDCIIYTSPD 316
Query: 225 NPS--RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
+ +NRGF F+ + ++ A +++K+ + + + WA+ + PD S+V
Sbjct: 317 AGANRKNRGFCFLDFCDHKAASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEE-TMSKV 375
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LYV+N+ + + E++KE+F HGEV + RD+ FIH+ ER ALKA++
Sbjct: 376 KVLYVRNLKEAVTEEQLKEMFAAHGEVERA------KKIRDYAFIHFKEREPALKAMEAL 429
Query: 343 EKYEIDG 349
++G
Sbjct: 430 NGTVLEG 436
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 139/250 (55%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G LP+D E++L + E IG ++EVRLM D SG ++G+AFV + +KE AK
Sbjct: 53 PQRGCEVFVGKLPRDLYEDELVPVFETIGKIYEVRLMMD-FSGSNRGYAFVMYTNKEDAK 111
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ +L++ E+ KG+ + S RLF+G +PKN + E + + V GV + +
Sbjct: 112 RAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKVTEGVVNVIVYP 171
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ +L G+ + WA+ +
Sbjct: 172 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAE-PEPEVDEEVMRK 230
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK+ F+ E VT+V RD+ F+HY R A+ A+
Sbjct: 231 VKVLYVRNLMVTTTEDDIKQAFEVGEEETVTRV------KKIRDYAFVHYKTREDAIAAM 284
Query: 340 KDTEKYEIDG 349
++G
Sbjct: 285 TAMNGSTLEG 294
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 139/252 (55%), Gaps = 11/252 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + IG ++E+RLM D SG ++G+AFV + ++E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDF-SGSNRGYAFVMYTTRED 110
Query: 161 AKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
KKA+ +L++ E+ KG+ + S RLF+G +PKN ++E + V V + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y N+ A +R+K++ +L G+ + WA+P+ D
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
VK LYV+N+ +T+ E I + F + G V +V RDF FIH+ R AL
Sbjct: 231 G-VKILYVRNLMLHTTEETIAKEFNAFKEGSVERV------KKLRDFAFIHFFTREDALN 283
Query: 338 AVKDTEKYEIDG 349
A+ + +DG
Sbjct: 284 AMNAMDDPLLDG 295
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 143/251 (56%), Gaps = 12/251 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+FIG LP+D E++L + E G FE+R+M D +G ++GF FV+++++ +
Sbjct: 71 PEKGTEIFIGKLPRDLFEDELYPVLESYGPAFELRMMLD-FNGNNRGFCFVTYQTRNESH 129
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ +++ E+ KG+ + S RLF+G +PK+ DE + ++ V GV + +
Sbjct: 130 AALKGINNLEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDEIMEEMKKVTEGVVDVIVYP 189
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S+NRGFSFV Y ++ A +R+K++ +L G+ + WA+P+ + S +
Sbjct: 190 SAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIAVDWAEPEIEVEESVMET- 248
Query: 282 VKALYVKNIPDNTSTEKIKELFQR---HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
VK LYV+N+ +TS + ++ F + G + +V RD+ F+H+ R +ALKA
Sbjct: 249 VKILYVRNLMLHTSEDTLEAAFAKVTGKGTIERV------KKIRDYAFVHFNTRDNALKA 302
Query: 339 VKDTEKYEIDG 349
+K+ IDG
Sbjct: 303 MKELNNGMIDG 313
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 138/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 140/247 (56%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE G ++E+R+M D +G ++G+AFV+F +++ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKTGKIYEMRMMMD-FNGNNRGYAFVTFTNRQDARDAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILAEMRKVTDGVLDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKAKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E I++ F + G V +V RD+ F+H+ R+ A+ A+
Sbjct: 233 LYVRNLMLTTAEETIEKEFSSVKPGSVERV------KKIRDYAFVHFRNRADAVDAMNVL 286
Query: 343 EKYEIDG 349
IDG
Sbjct: 287 NGKIIDG 293
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 141/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L L E G ++E RLM + +GE++G+AFV + +KE A++AI
Sbjct: 76 CEVFVGKIPRDMYEDELVPLFERAGKLYEFRLMME-FTGENRGYAFVMYTNKEAAQRAIQ 134
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L + +++ GK I +S RLFIG++PK T+DE ++ V GV + + +
Sbjct: 135 MLDNYKVRPGKFIGVCVSLDNCRLFIGSIPKEKTKDEVMAEMKKVTDGVVDVIMYPSSTD 194
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
SRNRGF+FV Y ++ A +R+K++ F+L G + + WA+P+ + +V+ +
Sbjct: 195 KSRNRGFAFVEYKSHKAAAMARRKLIPGTFQLWGQSIQVDWAEPEKDVEEE-VMQRVRVI 253
Query: 286 YVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E + + F + G V +V D+ F+HY R AL A+
Sbjct: 254 YVRNLMLSTTEETLFQEFSHFKPGSVERV------KKLTDYAFVHYYCREDALAALAIMN 307
Query: 344 KYEIDGKS 351
+IDG +
Sbjct: 308 GVQIDGAT 315
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 139/252 (55%), Gaps = 13/252 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E IG+++E+RLM D SG ++G+ FV + ++ AK
Sbjct: 54 PARGCEVFVGKIPRDCYEDELVPVFEKIGEIYELRLMMDF-SGSNRGYCFVMYTKRDDAK 112
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E+ KG+ + LS RLF+G +PKN E R ++ V GV + +
Sbjct: 113 RAVRELNNFEIRKGRFLGVCLSVDNCRLFVGGIPKNKQRHEIRTEMKKVTEGVVDVIVYP 172
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D S+
Sbjct: 173 SATDKAKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDED-VMSK 231
Query: 282 VKALYVKNI----PDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
VK LYV+N+ + + + G V +V RD+ F+H+ ER AL
Sbjct: 232 VKILYVRNLMLTTTEEFLETTFNQACGKEGAVERV------KKLRDYAFVHFKERDDALL 285
Query: 338 AVKDTEKYEIDG 349
A++ I+G
Sbjct: 286 AMEVINGQLIEG 297
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 145/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>gi|37359248|gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
Length = 342
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 143/247 (57%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E+DL+ + +G+V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 32 EVFVGGLDKDATEDDLKKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 91
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G VE + L++D N
Sbjct: 92 LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 151
Query: 227 SRNRGFSFV--LYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + F +D T +S+ D P A QVK
Sbjct: 152 GMNRGFAFLEFSFRSDAMDAFKRLQEERCVFGVD-RTAKVSFTDSFIDPGDEIMA-QVKT 209
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P + ++++EL +++GE+ K+ MP K ++DFGF+ + +A+ K
Sbjct: 210 VFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAK 267
Query: 341 DTEKYEI 347
E+
Sbjct: 268 SINNAEL 274
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 141/250 (56%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 79 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 137
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 138 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVIDVIVYA 197
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 198 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 256
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ TS E I+++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 257 VKILYVRNLMMETSEETIRKVFSQWNPGCVERV------KKIRDYAFVHFNSRDDAVLAM 310
Query: 340 KDTEKYEIDG 349
E++G
Sbjct: 311 NHLNGTEVEG 320
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 145/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 144/248 (58%), Gaps = 12/248 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIG-NVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+L++ E++ G+ + S RLF+G + PK +E ++ V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGDPPKTKKREEILAEMKKVTDGVVDVIVYPSA 173
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 ADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VK 232
Query: 284 ALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A+ A+K
Sbjct: 233 ILYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVDAMKA 286
Query: 342 TEKYEIDG 349
+DG
Sbjct: 287 LNGKVLDG 294
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 141/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A++A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVQAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ G+ I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGRFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSAID 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKFIDGAS 300
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 141/252 (55%), Gaps = 11/252 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 210 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKADAK 268
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 269 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 328
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 329 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 387
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+A R A+ A+
Sbjct: 388 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAM 441
Query: 340 KDTEKYEIDGKS 351
E++G
Sbjct: 442 NHLNGTELEGSC 453
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 140/251 (55%), Gaps = 14/251 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G+EVFIG +P+D E++L L E G++ E RL D +G +KGFAF +F + A +A
Sbjct: 108 SGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTKQTSAYQA 167
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTED----EFRKVIEDVGPGVETIEL 219
I L+ K+++ G+ + S + +RLF+ +PK +++ EF KV D+ V +
Sbjct: 168 ITTLNDKDIRPGRRLAICKSRSNSRLFVKGIPKRKSKEEIFQEFSKVTTDL-QDVIVYQS 226
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP-TISWADPKSTPDHSAA 278
+ NRGF F+ Y N + + + ++ G ++WA+ + PD+ A
Sbjct: 227 CDQGNHGDLNRGFVFLEYANYIAGASALHRFTDGKVRIWGKVLEAVTWAEAREIPDY-AV 285
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
S+VK++YV+N+P S ++K +F ++G++ KV RD+GF+++A+R SA++A
Sbjct: 286 MSKVKSIYVRNVPLPMSETQLKAVFTKYGQIEKV------RKIRDYGFVYFAKRESAVQA 339
Query: 339 VKDTEKYEIDG 349
+ IDG
Sbjct: 340 IDGINGAYIDG 350
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 137/247 (55%), Gaps = 10/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E++IG +P + E+ L L E +G ++++RLM D +G+++G+AF++F K FA +A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 166 DELHSKE-LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ E L GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 316
Query: 225 --NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
+NRGF F+ + ++ A +++K+ + + WA+ + PD A +V
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA-KV 375
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LYV+N+ + + E++KE+F HGEV V +D+ FIH+ ER A+KA++
Sbjct: 376 KVLYVRNLKEAVTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEAL 429
Query: 343 EKYEIDG 349
++G
Sbjct: 430 NGTVLEG 436
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 71 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 129
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 130 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 189
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 190 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 248
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A++A+
Sbjct: 249 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVRAMNSL 302
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 303 NGTELEGSC 311
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 67 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 125
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 126 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 185
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 186 KTKNRGFAFVKYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 244
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
+V+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 FVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMS 298
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 299 GKCIDGAS 306
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 25/266 (9%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKML-------------NANFKLDGNTPTIS 265
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ +
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGIPAPPSLVTVTPGRIQLWGHPIAVD 227
Query: 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRD 323
WA+P+ D +S VK LYV+N+ +TS E I++ F + G V +V RD
Sbjct: 228 WAEPEVEVDEDTMSS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRD 280
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDG 349
+ F+H++ R A++A+K +DG
Sbjct: 281 YAFVHFSNREDAVEAMKALNGKVLDG 306
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 136/248 (54%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F SKE A+
Sbjct: 158 PPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYL 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
PQ+ S+NRGF F+ Y DH AA Q
Sbjct: 278 QPQDKSKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ ++ + E +++ F +G + +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANSVTEEILEKSFSEYGNLERV------KKLKDYAFIHFEERDGAVKALEE 355
Query: 342 TEKYEIDG 349
E++G
Sbjct: 356 MNGKELEG 363
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ + IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTAEDTIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 237 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 295
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 296 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 355
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 356 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 414
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 415 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 468
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 469 GKCIDGAS 476
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 137/247 (55%), Gaps = 10/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E++IG +P + E+ L L E +G ++++RLM D +G+++G+AF++F K FA +A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 166 DELHSKE-LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ E L GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 316
Query: 225 --NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
+NRGF F+ + ++ A +++K+ + + WA+ + PD A +V
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA-KV 375
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LYV+N+ + + E++KE+F HGEV V +D+ FIH+ ER A+KA++
Sbjct: 376 KVLYVRNLKEAVTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEAL 429
Query: 343 EKYEIDG 349
++G
Sbjct: 430 NGTVLEG 436
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 141/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK++F + G V +V RD+ F+H+A R A+ A+K
Sbjct: 248 LYVRNLMMETTEDTIKKIFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMKKL 301
Query: 343 EKYEIDGKS 351
+++G
Sbjct: 302 NGTDLEGSC 310
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 141/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A++A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVQAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 137/247 (55%), Gaps = 10/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E++IG +P + E+ L L E +G ++++RLM D +G+++G+AF++F K FA +A
Sbjct: 185 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 244
Query: 166 DELHSKE-LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ E L GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 245 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 304
Query: 225 --NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
+NRGF F+ + ++ A +++K+ + + WA+ + PD A +V
Sbjct: 305 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA-KV 363
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LYV+N+ + + E++KE+F HGEV V +D+ FIH+ ER A+KA++
Sbjct: 364 KVLYVRNLKEAVTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEAL 417
Query: 343 EKYEIDG 349
++G
Sbjct: 418 NGTVLEG 424
>gi|449519174|ref|XP_004166610.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228505 [Cucumis sativus]
Length = 788
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 201/366 (54%), Gaps = 27/366 (7%)
Query: 8 EDRVDLEEDNYMEEMDDDV-----EEQVEEDPEEEGGD--GNFEENDDDEEYDHSKAGAS 60
++R+DLE+++ E D+D E+++E++ +E D G E+N DEE D +
Sbjct: 126 DERLDLEDNDPESEPDEDGGFEYDEKEIEQEDVQEVVDXGGEPEDNVGDEEGDMVEEDVE 185
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSE--VFIGGLPKDA 118
+ + E DDD E+ E A + + ++D+H +++ E VF+GGL KD
Sbjct: 186 DAQEDLEGE--DDDQQGGEDHEH--AGMVDADEDEHHEVVKERRKRKEFEVFVGGLDKDV 241
Query: 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
EEDL+ + +G+V EVRLM + ++ ++KGFAF+ F + E AK+A+ EL + + GK
Sbjct: 242 KEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKNPVINGKQC 301
Query: 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNPSRNRGFSFVLY 237
+ S+ + LF+GN+ K W +D ++ ++ G VE + L++D N NRGF+F+ +
Sbjct: 302 GVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSNRGFAFLEF 361
Query: 238 --YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
++A + R + + F +D +S+AD P A QVK ++V ++P +
Sbjct: 362 SSRSDAMDAFKRLQKRDVVFGVD-RPAKVSFADSFIDPGDEIMA-QVKTVFVDSLPASWD 419
Query: 296 TEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSAL---KAVKDTEKYEID 348
E ++ L +++GE+ K+ MP K ++DFGF+ + +A+ K++ ++E E D
Sbjct: 420 EEFVRGLLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVSCAKSINNSELGEGD 477
Query: 349 GKSHLH 354
K+ +
Sbjct: 478 NKAKVR 483
>gi|350645567|emb|CCD59692.1| apobec-1 complementation factor, putative [Schistosoma mansoni]
Length = 702
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 134/239 (56%), Gaps = 5/239 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D E++L + E G ++ RLM D +G ++G+ F + ++ K
Sbjct: 61 PPKGCEVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMD-FNGLNRGYGFCLYTNRNDTK 119
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+D+L+ E+ KGK + S RLFIG +PK+ T+DE + V GV+ + +
Sbjct: 120 QAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKVTDGVKDVIVYP 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y N+ A +R+K++ L G+ + WA+P+ D + S+
Sbjct: 180 SLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQVDEN-IMSK 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
V+ LYV+N+ +T+ +K+ F + V K RD+ F+H+ R A+ A+K
Sbjct: 239 VRILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKI--RDYAFVHFHNRIDAITALK 295
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 71 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 129
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 130 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 189
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 190 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 248
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A++A+
Sbjct: 249 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVRAMNSL 302
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 303 NGTELEGSC 311
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 141/254 (55%), Gaps = 11/254 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K
Sbjct: 65 AHPQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHE 123
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 124 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 183
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D
Sbjct: 184 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 243
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ VK LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+
Sbjct: 244 T-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVH 296
Query: 338 AVKDTEKYEIDGKS 351
A+ E++G
Sbjct: 297 AMNSLNGTELEGSC 310
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 138/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|256077575|ref|XP_002575078.1| apobec-1 complementation factor [Schistosoma mansoni]
Length = 847
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D E++L + E G ++ RLM D +G ++G+ F + ++ K
Sbjct: 61 PPKGCEVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMD-FNGLNRGYGFCLYTNRNDTK 119
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+D+L+ E+ KGK + S RLFIG +PK+ T+DE + V GV+ + +
Sbjct: 120 QAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKVTDGVKDVIVYP 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y N+ A +R+K++ L G+ + WA+P+ D S+
Sbjct: 180 SLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQVD-ENIMSK 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
V+ LYV+N+ +T+ +K+ F + V K RD+ F+H+ R A+ A+K
Sbjct: 239 VRILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKI--RDYAFVHFHNRIDAITALK 295
>gi|359386142|gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
Length = 775
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KD +DLR + +G+V EVRLM + ++ ++KGFAF+ F + E A++A+ E
Sbjct: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G VE + L++D N
Sbjct: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D +S+AD P A QVK
Sbjct: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFADSFIDPGDEIMA-QVKT 375
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
++V +P + ++++EL + +GE+TK+ MP K ++DFGF+ + +A+ K
Sbjct: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAK 433
Query: 341 DTEKYEI 347
E+
Sbjct: 434 SINNAEL 440
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 138/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 137/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKRSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 141/245 (57%), Gaps = 11/245 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + ++E A++AI
Sbjct: 59 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQRAIQL 117
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L + E++ GK I +S RLFIG++PK+ ++E ++ + V GV + + +
Sbjct: 118 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 177
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF+FV Y ++ A +R+K++ F+L G+T + WA+P+ D +V+ LY
Sbjct: 178 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEE-TMQRVRVLY 236
Query: 287 VKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
V+N+ +T+ E ++ F + G V +V D+ FIH+ R AL A++
Sbjct: 237 VRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALESMNG 290
Query: 345 YEIDG 349
IDG
Sbjct: 291 KVIDG 295
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK+A+
Sbjct: 72 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAV 130
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 131 RELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 190
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 191 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 249
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+
Sbjct: 250 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNSL 303
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 304 NGTELEGSC 312
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 141/252 (55%), Gaps = 15/252 (5%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AF+ + K
Sbjct: 65 AHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFIMYCHKHE 123
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK+A+ EL++ E++ G+ + S RLFIG +PK +E KV E GV + +
Sbjct: 124 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKLKKREEIAKVTE----GVLDVIM 179
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D
Sbjct: 180 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 239
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ VK LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+
Sbjct: 240 T-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVH 292
Query: 338 AVKDTEKYEIDG 349
A+ + E++G
Sbjct: 293 AMSNLNGTELEG 304
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 141/245 (57%), Gaps = 11/245 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + ++E A++AI
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQRAIQL 104
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L + E++ GK I +S RLFIG++PK+ ++E ++ + V GV + + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 164
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF+FV Y ++ A +R+K++ F+L G+T + WA+P+ D +V+ LY
Sbjct: 165 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEE-TMQRVRVLY 223
Query: 287 VKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
V+N+ +T+ E ++ F + G V +V D+ FIH+ R AL A++
Sbjct: 224 VRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALESMNG 277
Query: 345 YEIDG 349
IDG
Sbjct: 278 KVIDG 282
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 148/254 (58%), Gaps = 12/254 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKK------IRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDGK 350
+A+K +DG
Sbjct: 281 EAMKALNGKVLDGS 294
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 138/240 (57%), Gaps = 10/240 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF G +PKD E++L L E G ++++RLM D + ++G+ F++F +KE A+
Sbjct: 154 PPPGCEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPLTQFNRGYCFITFCTKEGAE 213
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A +L + +K GK I+ ++S RLF+GN+PK+ ++DE + G+ + + +
Sbjct: 214 EAT-KLDNYAIKPGKNIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEGLVDVIIYR 272
Query: 222 DPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
+ + +NRGF+F+ Y ++ A +++K+ K+ + WADP PD S
Sbjct: 273 SAEKENQKNRGFAFLEYDSHKSASTAKRKLSTGRLKVWNCDVIVDWADPVDNPDDE-TMS 331
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + +KE F G++ + +D+GFIH+ +R A+KA++
Sbjct: 332 KVKVLYVRNLTSEVTEDIMKEKFGEFGKIERA------KKVKDYGFIHFEDRDDAIKAMQ 385
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 139/248 (56%), Gaps = 10/248 (4%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G E++IG +PK+ E+ L L E +G ++++RLM D +G ++G+AF+++ K A +A
Sbjct: 311 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEA 370
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ E+ GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 371 AKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSP 430
Query: 224 Q--NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+NRGF F+ + ++ A +++K+ + + + WA+ + PD A +
Sbjct: 431 DAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA-K 489
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + + E++KE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 490 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAMEA 543
Query: 342 TEKYEIDG 349
E++G
Sbjct: 544 LNGTELEG 551
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 69 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 127
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 128 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 187
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 188 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 246
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 300
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 301 NGTELEGSC 309
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 139/248 (56%), Gaps = 10/248 (4%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G E++IG +PK+ E+ L L E +G ++++RLM D +G ++G+AF+++ K A +A
Sbjct: 291 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAAYEA 350
Query: 165 IDELHSKE-LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ E + GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 351 AKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSP 410
Query: 224 Q--NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+NRGF F+ + ++ A +++K+ + + + WA+ + PD A +
Sbjct: 411 DAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA-K 469
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + + E++KE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 470 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAMEA 523
Query: 342 TEKYEIDG 349
E++G
Sbjct: 524 LNGTELEG 531
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + KE A+ AI
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTMKEEAQLAI 118
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 119 RILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSAT 178
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ +R+K++ F+L G+T + WADP+ D +VK
Sbjct: 179 DKTKNRGFAFVKYESHREPAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKV 237
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L+V+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 238 LFVRNLMISTTEETIKGEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVM 291
Query: 343 EKYEIDGKS 351
IDG S
Sbjct: 292 SGKCIDGAS 300
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 139/248 (56%), Gaps = 10/248 (4%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G E++IG +PK+ E+ L L E +G ++++RLM D +G ++G+AF+++ K A +A
Sbjct: 278 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEA 337
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ E+ GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 338 AKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSP 397
Query: 224 Q--NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+NRGF F+ + ++ A +++K+ + + + WA+ + PD A +
Sbjct: 398 DAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA-K 456
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + + E++KE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 457 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAMEA 510
Query: 342 TEKYEIDG 349
E++G
Sbjct: 511 LNGTELEG 518
>gi|224067534|ref|XP_002302501.1| predicted protein [Populus trichocarpa]
gi|222844227|gb|EEE81774.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 143/247 (57%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E+DLR + +G+V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 33 EVFVGGLDKDATEDDLRKIFSRVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 92
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G V+ + L++D N
Sbjct: 93 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVKDLTLVEDSNNA 152
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D +S+AD P A QVK
Sbjct: 153 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFADSFIDPGDEIMA-QVKT 210
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P + ++++ L +++GE+ K+ MP + ++DFGF+ + +A+ K
Sbjct: 211 VFIDGLPASWDEDRVRVLLKKYGEIEKIELARNMPSAR--RKDFGFVTFDTHDAAVTCAK 268
Query: 341 DTEKYEI 347
E+
Sbjct: 269 SINNAEL 275
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKSEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 107 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 165
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 166 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 225
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 226 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 284
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 285 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNNL 338
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 339 NGTELEGSC 347
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 106 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKSEAKRAV 164
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 165 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 224
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 225 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 283
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 284 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNNL 337
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 338 NGTELEGSC 346
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 140/250 (56%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 86 PQRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 144
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 145 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVIDVIVYA 204
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 205 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 263
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ TS E I+++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 264 VKILYVRNLMMETSEETIRKVFSQWNPGCVERV------KKIRDYAFVHFNSRDDAVLAM 317
Query: 340 KDTEKYEIDG 349
E++G
Sbjct: 318 NQLNGTEVEG 327
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 135/246 (54%), Gaps = 9/246 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+++G +P D E+ L L E G ++++RLM D SG S+G+AFV++ +KE A A
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAA 258
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
E+ GK ++ ++S RLFIGN+PK ++DE + ++ GV + + P
Sbjct: 259 KTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVPD 318
Query: 225 NPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
N +NRGF FV + ++ A ++K+ + + WA+ + PD S+VK
Sbjct: 319 NEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDED-TMSKVK 377
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LY++NI + + EK+ ELF+ + + +V +D+ FIH+ ER LKA+++
Sbjct: 378 VLYIRNIKEAVTEEKLNELFKEYASLDRV------KKVKDYAFIHFNERDDCLKAMEEWN 431
Query: 344 KYEIDG 349
E++G
Sbjct: 432 GKELEG 437
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKS 319
P W P + P A Q +YV +IP + + + LF++ G++ +++M P
Sbjct: 184 PPPDWEGPATGP-----AGQGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSG 238
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEI 347
R + F+ Y + A A K + +EI
Sbjct: 239 ASRGYAFVTYCNKEDAAAAAKTYDGHEI 266
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 141/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIK 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK +DE ++ V GV + + + +
Sbjct: 120 FLNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKDEILNEMKKVTEGVVDVIVYPNATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R++++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMMSTTEETIKAEFNKFKPGVVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 209
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 210 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 263
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 264 NGTELEGSC 272
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 11/247 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDG 349
E++G
Sbjct: 302 NGTELEG 308
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETMGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEVAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 69 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 127
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 128 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 187
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 188 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 246
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 300
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 301 NGTELEGSC 309
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 209
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 210 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 263
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 264 NGTELEGSC 272
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 209
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 210 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 263
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 264 NGTELEGSC 272
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 209
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 210 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 263
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 264 NGTELEGSC 272
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYAGAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 143/254 (56%), Gaps = 14/254 (5%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
+P G EVF+G LP+D E++L + E G ++E+RLM D +G ++GFAFV + +
Sbjct: 96 VIPGKGCEVFVGKLPRDLYEDELVPVLEKCGRIYELRLMMD-FNGNNRGFAFVKYCAASE 154
Query: 161 AKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A+ A+ +L++ E+ KG+ + S RLF+G +PK ++E ++ V GV + +
Sbjct: 155 ARAALKDLNNFEIRKGRLLGVCKSVDNCRLFVGGIPKTKQKEEILIEMKKVTEGVCDVIV 214
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ +NRGF+FV Y ++ A +R+K+++ ++ G+ + WA+P+ D A
Sbjct: 215 YPSAADKQKNRGFAFVEYQDHHTAAMARRKLMHTRPQIWGHPIAVDWAEPEVEVDDDIMA 274
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSA 335
+ VK LYV+N+ NT+ E+++ F ++P G + RD+GF+H+ R +A
Sbjct: 275 T-VKILYVRNLMLNTTEEQLEAEF-------SALVPSGSIERVKKIRDYGFVHFNTRENA 326
Query: 336 LKAVKDTEKYEIDG 349
+K +K +DG
Sbjct: 327 IKCLKQLNGKILDG 340
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 138/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G +E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRTYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 126/233 (54%), Gaps = 9/233 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L L E +G + E+RLM D SG ++G+AF + A++A
Sbjct: 43 GAEIFLGRLPRDCYEDELMPLLEQVGRLLELRLMLDF-SGSTRGYAFALYEDPRIAREAC 101
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ L+ E++ G I S RLF G VPKN T+ EF + + + G+ I + + Q
Sbjct: 102 ERLNGHEIRPGHRIGVVKSMDNCRLFFGGVPKNKTKLEFLEELTKILDGIVDIYVYPNAQ 161
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
N S NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 162 NRSLNRGFIFVEFRDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVT 221
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSA 335
AL+V+N+ + +K+KE+ RH V P K K + F FIHY R +A
Sbjct: 222 ALFVRNLSIDMPQQKVKEIIYRHTNV-----PILKLKKINHFAFIHYESREAA 269
>gi|358344177|ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 148/257 (57%), Gaps = 14/257 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E+DLR + +G V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + L++GN+ K WT++ ++ ++ G VE I L++D +
Sbjct: 276 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDK 335
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D +S+AD P SQVK
Sbjct: 336 GTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVD-KPAKVSFADSFIDPGDE-IMSQVKT 393
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALK--- 337
+++ +P + + ++ L +++GEV K+ MP + ++D+GF+ + +A++
Sbjct: 394 VFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAAR--RKDYGFVTFGSHDAAIRCAD 451
Query: 338 AVKDTEKYEIDGKSHLH 354
++ TE E D K+ +
Sbjct: 452 SITGTELGEGDKKAKVR 468
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 135/257 (52%), Gaps = 15/257 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVFIG +P+D E++L L E G V++ RLM D +G+++G+AF+SF A+
Sbjct: 164 PAVGAEVFIGKIPRDMFEDELVPLFEKCGLVWDFRLMMDPMTGQNRGYAFLSFVELSAAR 223
Query: 163 KAIDELHSKELKGKT-IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K ++ E++ K + ++S+ NRLF+G++PK T+ E G+ + L
Sbjct: 224 KCVEMYDRFEIRSKRELHVTISQPNNRLFVGSIPKTKTKQEILDEFSKHTTGLTDVILYY 283
Query: 222 DPQNPS------RNRGFSFVLYYNNACADYSRQKMLNANFKLDGN-TPTISWADPKSTPD 274
+ + +NRGF F+ Y + A +R+++L+ K N T+ WADP +TP
Sbjct: 284 QVEEKNKGSGLQKNRGFCFLEYETHQAASQARRRLLSGRVKAWNNLIVTVDWADPINTPA 343
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSS 334
+VK LYVKN+ S + + + F GE+ KV +D+ F+H+ R
Sbjct: 344 DD-IMDKVKVLYVKNLATCVSEDIVSQTFAAFGEIEKV------KKLKDYAFVHFKNRDE 396
Query: 335 ALKAVKDTEKYEIDGKS 351
A A+ + + ++G+
Sbjct: 397 ARSAMTELNGFNLEGQC 413
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
PKS D A + +++ IP + +++ LF++ G V +++M P R + F
Sbjct: 155 PKSVSDKEQPAVGAE-VFIGKIPRDMFEDELVPLFEKCGLVWDFRLMMDPMTGQNRGYAF 213
Query: 327 IHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
+ + E S+A K V+ +++EI K LH +
Sbjct: 214 LSFVELSAARKCVEMYDRFEIRSKRELHVTI 244
>gi|224136394|ref|XP_002326849.1| predicted protein [Populus trichocarpa]
gi|222835164|gb|EEE73599.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 140/247 (56%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL KDA+E+DLR + +G+V E RLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 33 EIFVGGLDKDATEDDLRKVFSRVGEVTEARLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 92
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G VE + L++D N
Sbjct: 93 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNL 152
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D +S+AD P A QVK
Sbjct: 153 GMNRGFAFLEFSSRSDAMNAFKRLQKRDVLFGVD-RPAKVSFADSFIGPGDEIMA-QVKT 210
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
L++ +P + ++ + L +++G + K+ MP + ++DFGF+ + +A+ K
Sbjct: 211 LFIDGLPASWDEDRFRVLLKKYGNIEKIELARNMPSAR--RKDFGFVTFDTHDAAVACAK 268
Query: 341 DTEKYEI 347
E+
Sbjct: 269 SINNVEL 275
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 133/246 (54%), Gaps = 9/246 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+++G +P D E+ L L E G ++++RLM D +G S+G+AFV++ KE A A
Sbjct: 217 GHEIYVGHIPNDIFEDTLVPLFEKSGKIWDLRLMMDPMTGASRGYAFVTYCEKEHAANAA 276
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
E+ GK ++ ++S RLF+GN+PK ++DE + ++ GV + + P
Sbjct: 277 KTYDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKTHAEGVTDVIVYSVPD 336
Query: 225 NPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
N RNRGF FV + ++ A ++K+ + + WA+ + PD S+VK
Sbjct: 337 NDKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDED-TMSKVK 395
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LY++NI + + EK+ E+F+ + + +V +D+ FIH+ ER +KA++
Sbjct: 396 VLYIRNIKEAVTEEKLTEIFKEYASLDRV------KKVKDYAFIHFNEREDCMKAMEQWN 449
Query: 344 KYEIDG 349
E++G
Sbjct: 450 GKELEG 455
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 134/238 (56%), Gaps = 10/238 (4%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G E++IG +PK+ E+ L L E +G ++++RLM D +G ++G+AF+++ K A +A
Sbjct: 290 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAAYEA 349
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ E+ GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 350 AKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSP 409
Query: 224 Q--NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+NRGF F+ + ++ A +++K+ + + + WA+ + PD A +
Sbjct: 410 DAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA-K 468
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ + + E++KE+F +GEV + RD+ FIH+ ER A+KA+
Sbjct: 469 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAM 520
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 140/252 (55%), Gaps = 10/252 (3%)
Query: 101 ALPPNGS-EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A P GS E+++G +P D E+ L L G V+++RLM D +G S+G+AFV++ +KE
Sbjct: 202 ATGPTGSCEIYVGHIPNDIFEDKLLPLFAESGKVYDLRLMMDPMTGASRGYAFVTYCNKE 261
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
A A + EL GKT++ ++S RLF+GN+PK ++DE + ++ GV +
Sbjct: 262 DAAAAAKKFDGHELSPGKTLKVNISIANTRLFLGNIPKTKSKDEILEELKTHAEGVTDVI 321
Query: 219 LIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+ P N RNRGF FV + ++ A ++K+ + + WA+ + PD +
Sbjct: 322 VYSVPDNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQDEPD-AD 380
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S+VK LY++NI + + EK+ ELF+ + + +V +D+ FIH+ ER +K
Sbjct: 381 TMSKVKVLYIRNIKEAVTEEKLTELFKEYASLDRV------KKVKDYAFIHFNERDDCVK 434
Query: 338 AVKDTEKYEIDG 349
A+++ +++G
Sbjct: 435 AMEEWNGKDLEG 446
>gi|47230069|emb|CAG10483.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 154/332 (46%), Gaps = 89/332 (26%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE
Sbjct: 156 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 215
Query: 161 AKKAID-----ELHSK-------------------------------------------- 171
A++A+ LH+K
Sbjct: 216 AQQAVKLVRLRSLHNKNKCTPLCFFLHSAQPTQQCTVTVDIFLIVSKVLSPPLPQFSLQC 275
Query: 172 ---ELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P +
Sbjct: 276 NNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVILYLQPVDKK 335
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS------- 280
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 336 KNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLEDPDPEVMAKVRVGPRA 395
Query: 281 -----------------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317
QVK L+V+N+ + + E +++ F + G++ +V
Sbjct: 396 PIVCVLARIFFFFLPTLSLSGPLQVKVLFVRNLASSVTEELLEKAFSQFGKLERV----- 450
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+D+ FIH+ ER A+KA+ D +++G
Sbjct: 451 -KKLKDYAFIHFEERDGAVKALADLNGKDLEG 481
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 133/247 (53%), Gaps = 9/247 (3%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G E+++G +P D E+ L L G +++ RLM D +G S+G+AFV++ KE A A
Sbjct: 223 SGHEIYVGHIPTDLFEDTLVPLFAESGKIWDFRLMMDPMTGASRGYAFVTYCEKEHATNA 282
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ E+ GK ++ ++S RLF+GN+PK ++DE + ++ GV + + P
Sbjct: 283 AKKFDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKSHAEGVTDVIVYSVP 342
Query: 224 QNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
N RNRGF FV + ++ A ++K+ + + WA+ + PD S+V
Sbjct: 343 DNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEQQEEPDED-TMSKV 401
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LY++NI + + EK+ ELF+ + + +V +D+ FIH+ ER +KA++
Sbjct: 402 KVLYIRNIKEAVTEEKLTELFKEYASLDRV------KKVKDYAFIHFNERDDCMKAMEQW 455
Query: 343 EKYEIDG 349
E++G
Sbjct: 456 NGKELEG 462
>gi|321475098|gb|EFX86062.1| hypothetical protein DAPPUDRAFT_45498 [Daphnia pulex]
Length = 269
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 130/240 (54%), Gaps = 11/240 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E +L + + +G V+E+RLM D ++GFAFV+F + A
Sbjct: 23 PSKGGEVFVGKIPRDLMENELLPVFQTVGPVYEIRLMMDTNE-TNRGFAFVTFATPADAG 81
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KAI +L+ E++ G+ I S RLFIG +PK+ +E+E K + + GV + L
Sbjct: 82 KAIQKLNRYEIRPGRFIGVIRSMDNCRLFIGGIPKDKSEEEIHKEMSRITEGVVRVILYS 141
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+F+ Y ++ A +R+K L L G + WA+ S+
Sbjct: 142 SVADKKKNRGFAFIEYESHRAAALARRKCLPDRLLLWGKNVAVDWAE-PEPVVEEEILSK 200
Query: 282 VKALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
V+ LYV+N+ T ++++ELF +G V KV + DF FIH+ RS A +A+
Sbjct: 201 VRVLYVRNLLITTKEKELEELFDTAGNGGVEKVKI------LNDFAFIHFGSRSQAQQAM 254
>gi|356522972|ref|XP_003530116.1| PREDICTED: uncharacterized protein LOC100777658 [Glycine max]
Length = 866
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 144/252 (57%), Gaps = 12/252 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR + +G V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 283 EVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAE 342
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + L++GN+ K WT++ ++ ++ G VE + L++D +
Sbjct: 343 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDE 402
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+NRGF+F+ + + A + R + + F +D +S+AD P A QVK
Sbjct: 403 GKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVD-KLAKVSFADSFIDPGDEIMA-QVKT 460
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P + + +++L +++GE+ K+ MP + ++D+GF+ + +A+K
Sbjct: 461 VFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAAR--RKDYGFVTFGTHDAAVKCAD 518
Query: 341 DTEKYEIDGKSH 352
E+ G+ H
Sbjct: 519 SITGTEL-GEGH 529
>gi|356503232|ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 147/257 (57%), Gaps = 14/257 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR +G V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 233 EVFVGGLDKDATESDLRKAFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAE 292
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + L++GN+ K WT++ ++ ++ G VE + L++D +
Sbjct: 293 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDE 352
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+NRGF+F+ + + A + R + + F +D +S+AD P A QVK
Sbjct: 353 GKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVD-KPAKVSFADSFIDPGDEIMA-QVKT 410
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALK--- 337
+++ +P + + +++L +++GE+ K+ MP + ++D+GF+ + +A+K
Sbjct: 411 VFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAAR--RKDYGFVTFGSHDAAVKCAD 468
Query: 338 AVKDTEKYEIDGKSHLH 354
++ TE E D K+ +
Sbjct: 469 SITGTELGEGDKKAKVR 485
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 135/256 (52%), Gaps = 20/256 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D EE+L + E IG ++ RLM + +G ++G+ F + ++E K
Sbjct: 98 PPRGCEVFIGKIPRDCFEEELIPVFEQIGPIYMFRLMMEF-NGTNRGYGFCVYTNREDTK 156
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ L + E+ KGKTI S RLF+G +PKN T +E ++ V GV+ +
Sbjct: 157 KAVQALDNYEIRKGKTIGVCFSVDNCRLFVGGIPKNKTREEIMAEMKRVTEGVKDVISYP 216
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S+NRGF+FV Y ++ A +R+K++ +L + WA+P+ + S+
Sbjct: 217 SVTDKSKNRGFAFVEYESHKAAAMARRKLMPGKIQLWNQQIAVDWAEPEREVNED-IMSK 275
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHG--------EVTKVVMPPGKSGKRDFGFIHYAERS 333
VK LYV+N+ +T+ + ++E F V K+ D+ FIH+ ER
Sbjct: 276 VKILYVRNLMLSTTEDGLREHFVCAAGGDPNCIERVKKI---------SDYAFIHFKERE 326
Query: 334 SALKAVKDTEKYEIDG 349
A + ++ IDG
Sbjct: 327 QAARCLEALNDTLIDG 342
>gi|355561882|gb|EHH18514.1| hypothetical protein EGK_15134, partial [Macaca mulatta]
Length = 434
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 110/178 (61%), Gaps = 1/178 (0%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 335
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 9/233 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + E IG + E+RLM D SG ++G+AF SF + A++A
Sbjct: 54 GAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLD-FSGSTRGYAFASFEDVKTARRAC 112
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L E++ G I S RLF G VPKN +++EF + + + G+ I L
Sbjct: 113 AKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAH 172
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ + NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 173 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVT 232
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSA 335
AL+V+N+ + S +K++++FQ++ ++ P K K + F F+HY R +A
Sbjct: 233 ALFVRNLSLDMSQQKVRDIFQKNTKI-----PILKLKKINHFAFVHYESRQAA 280
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 9/233 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + E +G + E+RLM D SG ++G+AF F + + A+ A
Sbjct: 56 GAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLD-FSGSTRGYAFALFENSKIARSAC 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L E++ G I S RLF G VPKN ++EF + + + G+ I L
Sbjct: 115 AKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKILEGIIDIYLYPSAH 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ + NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 175 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVT 234
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSA 335
AL+V+N+ N +KI+++FQ++ ++ P K K + F F+HY R +A
Sbjct: 235 ALFVRNLSLNMPQQKIRDIFQKNTKI-----PILKLKKINHFAFVHYENRKAA 282
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 137/254 (53%), Gaps = 18/254 (7%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + E IG + E+RLM D SG ++G+AF SF + A++A
Sbjct: 60 GAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLD-FSGSTRGYAFASFEDVKTARRAC 118
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L E++ G I S RLF G VPKN +++EF + + + G+ I L
Sbjct: 119 AKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAH 178
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ + NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 179 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVT 238
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKA---- 338
AL+V+N+ + S +K++++FQ++ ++ P K K + F F+HY R +A
Sbjct: 239 ALFVRNLNLDMSQQKVRDIFQKNTKI-----PILKLKKINHFAFVHYENRQAAQTVMDIM 293
Query: 339 -----VKDTEKYEI 347
+ D+E +EI
Sbjct: 294 TRSNGIADSEGWEI 307
>gi|383850788|ref|XP_003700956.1| PREDICTED: APOBEC1 complementation factor-like [Megachile
rotundata]
Length = 479
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 129/240 (53%), Gaps = 10/240 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + E +G + E+RLM D SG ++G+AF F + A+ A
Sbjct: 60 GAEIFLGRLPRDCYEDELMPMLEKVGRLMELRLMLD-FSGSTRGYAFALFEDSKTARNAC 118
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L E++ G I S RLF G VPKN +++EF + + G+ I L
Sbjct: 119 AKLDGYEVRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMTELNKILEGITDIYLYPSAH 178
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ S NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 179 DKSLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEDVMENVT 238
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDT 342
AL+V+N+ + +KI+E+FQ+ ++ P K K + F FIHY R +A +AV D
Sbjct: 239 ALFVRNLSLDVQQQKIREIFQKSTKI-----PILKLKKINHFAFIHYESRQAA-QAVMDI 292
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 9/233 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + E +G + E+RLM D SG ++G+AF F + + A+ A
Sbjct: 45 GAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLD-FSGSTRGYAFALFENSKIARSAC 103
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L E++ G I S RLF G VPKN ++EF + + + G+ I L
Sbjct: 104 AKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKILEGIIDIYLYPSAH 163
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ + NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 164 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVT 223
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSA 335
AL+V+N+ N +KI+++FQ++ ++ P K K + F F+HY R +A
Sbjct: 224 ALFVRNLSLNMPQQKIRDIFQKNTKI-----PILKLKKINHFAFVHYENRKAA 271
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 132/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+F+G +P+D E++L L E G ++++RLM D S ++G+AF++F SKE A+
Sbjct: 158 PPVGTEIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANGVTEELLEKSFSEFGKLERV------KKLKDYAFIHFEERDGAVKALEE 355
Query: 342 TEKYEIDG 349
E++G
Sbjct: 356 MNGKELEG 363
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 141/250 (56%), Gaps = 19/250 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP RDL E IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 102
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 221
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 222 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 275
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 276 KALNGKVLDG 285
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 135/254 (53%), Gaps = 12/254 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+EVF+G LP+ S+ L + +G ++E+R M + SG ++G+ F ++S E AK
Sbjct: 58 PPRGTEVFVGKLPRAISDMRLIQVLSAVGPLYELRQMLE-PSGVNRGYCFAVYQSLEGAK 116
Query: 163 KAIDE---LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+A E L++ E++ G+ I S RLFIG +P+ D+ I G E +
Sbjct: 117 RACIESLQLNNVEIEPGRRIGVVRSVDNRRLFIGGIPREIKADQIIAEIRKHTEGAEELV 176
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + SRNRGF+FV Y ++ A Y+R+K L L G T I WA+P+ D S
Sbjct: 177 VYPSILDKSRNRGFAFVEYRDHKSAAYARKKFLQEPLILWGKTVCIDWAEPEQQVD-SDI 235
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
VK LYV+N+ NT +++ F+ G++ + + K RDF F+H+ R AL
Sbjct: 236 MENVKILYVRNLMLNTDEITLRKYFE-MGDIHCI----ERVKKIRDFAFVHFTTREKALN 290
Query: 338 AVKDTEKYEIDGKS 351
A+ ++DG +
Sbjct: 291 ALNKLNHTKLDGST 304
>gi|22327128|ref|NP_198191.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332006412|gb|AED93795.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 180
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 82/105 (78%), Gaps = 2/105 (1%)
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
M N +FKLD N PT+SWA+ +S + ++ASQVKALY+KN+P + + E++K LF+ HG++
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 310 TKVVMPPGKSGKRD--FGFIHYAERSSALKAVKDTEKYEIDGKSH 352
KVV+PP K GK D +GF+HYAER+S ++A+K+TE+YEID ++
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDASAY 105
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 141/250 (56%), Gaps = 19/250 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP RDL E IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 102
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 221
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 222 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 275
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 276 KALNGKVLDG 285
>gi|297824497|ref|XP_002880131.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
gi|297325970|gb|EFH56390.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
Length = 805
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 140/239 (58%), Gaps = 9/239 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+G L K A+EEDL+ + +G+V E+R++K+ ++ +SKG AF+ F + E AK+A+ E
Sbjct: 211 EIFVGSLDKGATEEDLKKVFGHVGEVTEIRILKNPQTKKSKGSAFLRFATMEQAKRAVKE 270
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L S + GK + S+ + LFIGN+ K WT + R+ ++ G ++ I L++D N
Sbjct: 271 LKSPMINGKKCGVTASQDNDTLFIGNICKTWTPEALREKLKHYGVENMDDITLVEDSNNV 330
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKAL 285
+ NRG++F+ + + + A + ++++ + P +S+ D P+ A QVK +
Sbjct: 331 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDPEDEIMA-QVKTI 389
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
++ + + + E++++L +R+G++ KV MP + ++DFGF+ + +A+ K
Sbjct: 390 FIDGLLPSWNEERVRDLLKRYGKLEKVELARNMPSAR--RKDFGFVTFDTHEAAVTCAK 446
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 141/250 (56%), Gaps = 19/250 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP RDL E IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 102
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 221
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 222 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 275
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 276 KALNGKVLDG 285
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 119/199 (59%), Gaps = 3/199 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE G V+E+R+M D +G ++G+AFV+F +++ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMD-FNGNNRGYAFVTFTNRQDARDAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELF 303
LYV+N+ T+ E I++ F
Sbjct: 233 LYVRNLMLTTAEETIEKEF 251
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 119/199 (59%), Gaps = 3/199 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE G V+E+R+M D +G ++G+AFV+F +++ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMD-FNGNNRGYAFVTFTNRQDARDAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELF 303
LYV+N+ T+ E I++ F
Sbjct: 233 LYVRNLMLTTAEETIEKEF 251
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 141/250 (56%), Gaps = 19/250 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP RDL E IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 102
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 221
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 222 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 275
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 276 KALNGKVLDG 285
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 142/248 (57%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + G ++E+RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFGRAGKIYELRLMME-FSGENRGYAFVMYTTKEEAQLAIK 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK+ ++E ++ V GV + + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKDKKKEEILNEMKKVTEGVVDVIVYPNATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R++++ F+ G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQPWGHTIQVDWADPEKIVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ +KIK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEDKIKAEFNKFKPGVVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 8/240 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+FIG LP D E++L L G ++ +RLM D G ++G+ F+S+ ++E A
Sbjct: 41 PPKGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMD-FFGRTRGYGFISYFTQEDAH 99
Query: 163 KAIDELHSKELKGK-TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ ++ +++ K I S+S RLFIGN+P++ T E + V+E G+ I
Sbjct: 100 AAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGIVDIIFYH 159
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+P N S NRGF FV + ++ A +R+++ N + G + WA+P + Q
Sbjct: 160 EPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEPLPVVN-PQILKQ 218
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
V LY+ N+P S+E++K + + ++ K K +F F+H+ R A +A +
Sbjct: 219 VTKLYLSNLPMTLSSEELKSFLCELLDPSHII----KVHKINNFAFVHFTLRKYAEEAFR 274
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 126/242 (52%), Gaps = 9/242 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+EVF+G LP+D E++L L E +G + E+RLM D SG ++G+AF F A+ A
Sbjct: 54 GAEVFLGRLPRDCYEDELMPLLEQVGRLLELRLMLD-FSGSTRGYAFALFEDSRVARIAC 112
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ L E++ G I S RLF G VPK T+ EF + + + G+ I + Q
Sbjct: 113 ERLDGYEIRPGHRIGVVKSMDNCRLFFGGVPKTKTKPEFMEELTKILDGITDIYVYPSAQ 172
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ + NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 173 DRNLNRGFIFVEFKDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPIDEDIMETVT 232
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDT 342
AL+V+N+ + S +K++E+ R+ V P K K + F F+HY R +A +
Sbjct: 233 ALFVRNLALDMSQQKVREILYRYTNV-----PILKLKKINHFAFVHYENREAAKTVMNIM 287
Query: 343 EK 344
E+
Sbjct: 288 ER 289
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 140/253 (55%), Gaps = 22/253 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
E++IG +PK E+ L L E G ++++R+M D SG +KG+AFV++ K A +A
Sbjct: 214 CEIYIGKIPKGIFEDTLIPLFEQCGKIYDIRVMMDPLSGTNKGYAFVTYCDKSSATEAAK 273
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPGVETIE--- 218
+ E+K GK +R ++S RLF+GN+PK+ +EF KV GV+ I
Sbjct: 274 KFEGYEIKNGKRLRVNVSVANTRLFVGNIPKSKGKEDIMEEFSKV-----SGVQNITDVI 328
Query: 219 LIKDPQNP--SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
+ +P +P +NRGF F+ + ++ A +++++ ++ F+ + WA+ + D
Sbjct: 329 MYSNPNDPVNKKNRGFCFLEFADHKSASQAKRRLGSSRFRPWMMELVVEWAETQDDVDKE 388
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
S+VK LY++ + D+ S E+++ F ++G V +V +D+ F+H+AER A
Sbjct: 389 -TMSKVKILYLRPLKDSVSEEELRVRFSQYGTVERV------KRIKDYAFVHFAEREQAE 441
Query: 337 KAVKDTEKYEIDG 349
KA++ + E DG
Sbjct: 442 KAIEAMKGQEFDG 454
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+Y+ IP + + LF++ G++ +V+M P + + F+ Y ++SSA +A K
Sbjct: 216 IYIGKIPKGIFEDTLIPLFEQCGKIYDIRVMMDPLSGTNKGYAFVTYCDKSSATEAAKKF 275
Query: 343 EKYEIDGKSHLHFPVFV 359
E YEI L V V
Sbjct: 276 EGYEIKNGKRLRVNVSV 292
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 8/240 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+FIG LP D E++L L G ++ +RLM D G ++G+ F+S+ ++E A
Sbjct: 402 PPKGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMD-FFGRTRGYGFISYFTQEDAH 460
Query: 163 KAIDELHSKELKGK-TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ ++ +++ K I S+S RLFIGN+P++ T E + V+E G+ I
Sbjct: 461 AAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGIVDIIFYH 520
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+P N S NRGF FV + ++ A +R+++ N + G + WA+P + Q
Sbjct: 521 EPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEPLPVVN-PQILKQ 579
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
V LY+ N+P S+E++K + + ++ K K +F F+H+ R A +A +
Sbjct: 580 VTKLYLSNLPMTLSSEELKSFLCELLDPSHII----KVHKINNFAFVHFTLRKYAEEAFR 635
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 136/244 (55%), Gaps = 18/244 (7%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G +P+D E++L L + +++ RLM D +G ++GFAFV++ + A+KA+
Sbjct: 30 GSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMD-FTGNTRGFAFVTYYNVWDAQKAV 88
Query: 166 DELHSKELKGKT----IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+ + + T + LS RLF GNVPK+ T D+ ++ G+ +++I
Sbjct: 89 LKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFIDGI--VKVIT 146
Query: 222 DPQNPSR--NRGFSFVLYYNNACADYSRQKML-NANFKLDGNTPTISWADPKSTPDHSAA 278
P+ + NRGF+FV + ++A A +R+K+L + + G + WA+P+ D
Sbjct: 147 YPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEPEPMVDPD-V 205
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKSGKRD-FGFIHYAERSSAL 336
+QVK LY+KN+P + +++K + GE+ + KRD + FIH+ ERS A
Sbjct: 206 MTQVKVLYMKNVPTFWTLDRLKTYISKTVGEIFI-----ERIYKRDNYAFIHFDERSFAE 260
Query: 337 KAVK 340
+A+K
Sbjct: 261 RALK 264
>gi|115459706|ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|38345947|emb|CAE04271.2| OSJNBb0103I08.18 [Oryza sativa Japonica Group]
gi|38345949|emb|CAE04337.2| OSJNBb0038F03.1 [Oryza sativa Japonica Group]
gi|113565024|dbj|BAF15367.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|215678877|dbj|BAG95314.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717042|dbj|BAG95405.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 774
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 138/249 (55%), Gaps = 15/249 (6%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR + +G++ EVRLM + + ++KGFAF+ + + E A++A+ E
Sbjct: 191 EVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSE 250
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE---LIKDPQ 224
L + ++GK + S + LF+GN+ K WT++ ++ ++ GVE + L++D
Sbjct: 251 LKNPSVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSY--GVENFDDLLLVEDSN 308
Query: 225 NPSRNRGFSFVLYYNN--ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
NP NRG++ + + A + R + + F +D + +S+AD D A QV
Sbjct: 309 NPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVD-RSAKVSFADSYPEVDDEIMA-QV 366
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKA 338
+ +++ +P + +++K+ +++G + KV MP K ++DFGF+ + +A+
Sbjct: 367 RTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNAVAC 424
Query: 339 VKDTEKYEI 347
EI
Sbjct: 425 ADGITNSEI 433
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 275 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 298
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 299 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 352
Query: 342 TEKYEIDG 349
+++G
Sbjct: 353 MNGKDLEG 360
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|225462858|ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
Length = 719
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 133/247 (53%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL +D +E+DL +GD+ EVRLMK+ + ++KGFAF+ F + E A++A++E
Sbjct: 126 EVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNE 185
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
L + GK + S+ + LF+GN+ K WT+ + + G E + L++D +N
Sbjct: 186 LKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNE 245
Query: 227 SRNRGFSFVLYYNNACA--DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + + A A R + + F D T +++AD PD SQV+
Sbjct: 246 GMNRGFAFLDFSSRADALEACKRLQKRDVVFGTD-RTARVAFADTFIEPD-DEIMSQVRT 303
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P +++++ ++ G + K+ MP K + DFGF+ + SA+ V
Sbjct: 304 IFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAK--RTDFGFVTFDTHDSAVACVD 361
Query: 341 DTEKYEI 347
E+
Sbjct: 362 SINNSEL 368
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 275 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 298
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 299 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 352
Query: 342 TEKYEIDG 349
+++G
Sbjct: 353 MNGKDLEG 360
>gi|326497027|dbj|BAK02098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 138/252 (54%), Gaps = 21/252 (8%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR + +G++ EVRLM + + ++KGFAF+ F + E AK+A+ +
Sbjct: 195 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 254
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFR---KVIEDVGPGVETIE---LIK 221
L + ++GK + S + LF+GN+ K WT++ + K+ E VE + L++
Sbjct: 255 LKNPMVRGKQCGVAPSRDNDTLFVGNICKTWTKEHLKDKLKIYE-----VENFDDLILVE 309
Query: 222 DPQNPSRNRGFSFVLYYNN--ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D NP NRG++ + + A + R + + F +D T +S+AD D A
Sbjct: 310 DSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVD-RTAKVSFADSYPEVDDEMMA 368
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSA 335
QV+ +++ +P + +++K+ +++G + KV MP K ++DFGF+ + +A
Sbjct: 369 -QVRTVFLDGLPPSWEEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNA 425
Query: 336 LKAVKDTEKYEI 347
+ V EI
Sbjct: 426 VACVDGITSSEI 437
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|296087486|emb|CBI34075.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 135/250 (54%), Gaps = 12/250 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL +D +E+DL +GD+ EVRLMK+ + ++KGFAF+ F + E A++A++E
Sbjct: 187 EVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNE 246
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
L + GK + S+ + LF+GN+ K WT+ + + G E + L++D +N
Sbjct: 247 LKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNE 306
Query: 227 SRNRGFSFVLYYNNACA--DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + + A A R + + F D T +++AD PD SQV+
Sbjct: 307 GMNRGFAFLDFSSRADALEACKRLQKRDVVFGTD-RTARVAFADTFIEPD-DEIMSQVRT 364
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P +++++ ++ G + K+ MP K + DFGF+ + SA+ V
Sbjct: 365 IFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAK--RTDFGFVTFDTHDSAVACVD 422
Query: 341 DTEKYE-IDG 349
E +DG
Sbjct: 423 SINNSELVDG 432
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 131/235 (55%), Gaps = 11/235 (4%)
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTI 178
E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI L++ E++ GK I
Sbjct: 3 EDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFI 61
Query: 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238
+S RLFIG +PK ++E ++ V GV + + + ++NRGF+FV Y
Sbjct: 62 GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYE 121
Query: 239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
++ A +R+K++ F+L G+T + WADP+ D +VK LYV+N+ +T+ E
Sbjct: 122 SHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVLYVRNLMISTTEET 180
Query: 299 IKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
IK F + G V +V RD+ F+H+ R A+ A+ IDG S
Sbjct: 181 IKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMNGKCIDGAS 229
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 35/183 (19%)
Query: 107 SEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
+FIG +PK+ +E++ D + E + DV DK +++GFAFV + S A
Sbjct: 70 CRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKT--KNRGFAFVEYESHRAAA 127
Query: 163 KAIDEL--HSKELKGKTIRCSLS--------ETKNR---LFIGNVPKNWTEDEFRKVIED 209
A +L + +L G TI+ + ET R L++ N+ + TE+ +
Sbjct: 128 MARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNK 187
Query: 210 VGPG-VETIELIKDPQNPSRNRGFSFVLYYN--NACADYSRQKMLNANFKLDGNTPTISW 266
PG VE ++ ++D ++FV ++N +A A S ++N +DG + ++
Sbjct: 188 FKPGAVERVKKLRD---------YAFVHFFNREDAVAAMS---VMNGKC-IDGASIEVTL 234
Query: 267 ADP 269
A P
Sbjct: 235 AKP 237
>gi|426221982|ref|XP_004005184.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Ovis aries]
Length = 598
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 125/238 (52%), Gaps = 43/238 (18%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH +AA Q
Sbjct: 281 QPDDKKKNRGFCFLEY-----------------------------------EDHKSAA-Q 304
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 305 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 356
>gi|313216719|emb|CBY37974.1| unnamed protein product [Oikopleura dioica]
Length = 580
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 133/253 (52%), Gaps = 27/253 (10%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCE--PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
N E FIG L +DA E D+ L E P V+E+RLM + G+S+GFAFVSF A+
Sbjct: 208 NNGECFIGSLHRDAFEPDIWTLLEEVPEATVYEIRLMMGYD-GKSRGFAFVSFVEDGAAQ 266
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+ L +K+ K + ++S R+FIG++PK+ ++ +F + + + G + +
Sbjct: 267 RCKALLDTKQFMEKKLHVNVSIPATRIFIGSIPKDKSKQQFEEELTNNGVSTWVVNQSQK 326
Query: 223 PQNPSRNRGFSFVLY-------------YNNACADYS--RQKMLNANFKLDGN-TPTISW 266
N + NRGF+FV + +N Y ++ +LN + L G + W
Sbjct: 327 -DNGASNRGFAFVEFESHMDASTVKVQSFNKLHLFYECFKKNLLNRSLALFGRYYQNVDW 385
Query: 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGF 326
ADP++TPD + S VK LYVK + + E+IK LF+ +G V KV +F F
Sbjct: 386 ADPENTPDDN-VMSTVKNLYVKGWSEARTEEEIKALFEPYGVVEKV------KKINNFSF 438
Query: 327 IHYAERSSALKAV 339
+H+ ER SALKA+
Sbjct: 439 VHFVERDSALKAI 451
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 141/246 (57%), Gaps = 7/246 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P++ E++L L E G ++E+RLM + SGE++GFAFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQLAIK 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ G+ I +S RLFIG +P+ ++E K ++ + GV + + D +
Sbjct: 120 ILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+++L F+L G + WA P+ D + +VK L
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD-AETMRRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
YV+N+ +T+ + IK F + +VV K RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEDTIKAEFNKFKP--RVVERVKK--LRDYAFVHFYNREDAVAAMSIMNGK 294
Query: 346 EIDGKS 351
IDG S
Sbjct: 295 CIDGAS 300
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 141/246 (57%), Gaps = 7/246 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P++ E++L L E G ++E+RLM + SGE++GFAFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQLAIK 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ G+ I +S RLFIG +P+ ++E K ++ + GV + + D +
Sbjct: 120 ILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+++L F+L G + WA P+ D + +VK L
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD-AETMRRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
YV+N+ +T+ + IK F + +VV K RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEDTIKAEFNKFKP--RVVERVKK--LRDYAFVHFYNREDAVAAMSVMNGK 294
Query: 346 EIDGKS 351
IDG S
Sbjct: 295 CIDGAS 300
>gi|307181116|gb|EFN68850.1| Probable RNA-binding protein 46 [Camponotus floridanus]
Length = 471
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 9/233 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L + E +G + E+RLM D SG ++G+AF + + A++A
Sbjct: 53 GSEIFLGRLPRDCYEDELMPVLEQVGRLLELRLMLD-FSGSTRGYAFALYETPRIAREAC 111
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L E++ G I S RLF G VPKN T+ EF + + + I L
Sbjct: 112 RRLDGYEIRRGHRIGVVKSMDNCRLFFGGVPKNKTKPEFMAELTKMLDDITDIYLYPSAH 171
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ S NRGF FV + ++ A +R+K++ L + + WADP+ P +V
Sbjct: 172 DRSLNRGFIFVEFKDHRAAAMARRKLIPGKVTLWDHEIAVDWADPEPGEPIDEDIMERVT 231
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSA 335
L+V+N+ + S + ++ +F RH V P K K + F FIHY R +A
Sbjct: 232 TLFVRNLALDISQQNVRGIFHRHTNV-----PILKLKKINHFAFIHYENRQAA 279
>gi|357165062|ref|XP_003580257.1| PREDICTED: uncharacterized protein LOC100827844 [Brachypodium
distachyon]
Length = 783
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 138/249 (55%), Gaps = 15/249 (6%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR + +G++ EVRLM + + ++KGFAF+ + + E A++A+ +
Sbjct: 200 EVFVGGLDKDATESDLRKVFSEVGEISEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSD 259
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE---LIKDPQ 224
L + ++GK + S + LF+GN+ K WT++ + ++ VE + L++D
Sbjct: 260 LKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSY--EVENFDDLILVEDSN 317
Query: 225 NPSRNRGFSFVLYYNN--ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
NP NRG++ + + A + R + +A F +D + +S+AD D A QV
Sbjct: 318 NPGMNRGYALLEFSTRPEAMDAFRRLQKRDAVFGVD-RSAKVSFADSYPEVDDEMMA-QV 375
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKA 338
+ +++ +P + +++K+ +++G + KV MP K ++DFGF+ + +A+
Sbjct: 376 RTIFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNAVAC 433
Query: 339 VKDTEKYEI 347
V EI
Sbjct: 434 VDGITSSEI 442
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 132/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NR F F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRSFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 132/248 (53%), Gaps = 43/248 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
+ L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 ARLLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDG 349
+++G
Sbjct: 356 MNGKDLEG 363
>gi|9502153|gb|AAF88006.1| contains similarity to Pfam family PF00076 (RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)), score=42.1,
E=1.3e-08, N=1 [Arabidopsis thaliana]
Length = 298
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 90/217 (41%)
Query: 137 RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPK 196
++M++KE G+ KG+ FV+FR K+ A +AID L+ N +F
Sbjct: 106 KIMREKEPGDGKGYPFVTFRCKDLAAEAIDNLN-----------------NTVF------ 142
Query: 197 NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256
++PQN RNRGF+F+ YYN+
Sbjct: 143 ------------------------REPQNMGRNRGFAFIEYYNH---------------- 162
Query: 257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP 316
VKALY+KN+P + + E++K LF+ HG++ KVV+PP
Sbjct: 163 -------------------------VKALYIKNLPRDITQERLKALFEHHGKILKVVIPP 197
Query: 317 GKSGKRD--FGFIHYAERSSALKAVKDTEKYEIDGKS 351
K GK D +GF+HYAER+S ++A+K+TE+YEIDG +
Sbjct: 198 AKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHA 234
>gi|30689808|ref|NP_850422.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20147226|gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|23308467|gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|330255364|gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 809
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 138/239 (57%), Gaps = 9/239 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+G L K ASEEDL+ + +G+V EVR++K+ ++ +SKG AF+ F + E AK+A+ E
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L S + GK + S+ + LF+GN+ K WT + R+ ++ G ++ I L++D N
Sbjct: 275 LKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNV 334
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKAL 285
+ NRG++F+ + + + A + ++++ + P +S+ D + A QVK +
Sbjct: 335 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMA-QVKTI 393
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
++ + + + E++++L + +G++ KV MP + ++DFGF+ + +A+ K
Sbjct: 394 FIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSAR--RKDFGFVTFDTHEAAVSCAK 450
>gi|110740397|dbj|BAF02093.1| hypothetical protein [Arabidopsis thaliana]
Length = 809
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 138/239 (57%), Gaps = 9/239 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+G L K ASEEDL+ + +G+V EVR++K+ ++ +SKG AF+ F + E AK+A+ E
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L S + GK + S+ + LF+GN+ K WT + R+ ++ G ++ I L++D N
Sbjct: 275 LKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNV 334
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKAL 285
+ NRG++F+ + + + A + ++++ + P +S+ D + A QVK +
Sbjct: 335 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMA-QVKTI 393
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
++ + + + E++++L + +G++ KV MP + ++DFGF+ + +A+ K
Sbjct: 394 FIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSAR--RKDFGFVTFDTHEAAVSCAK 450
>gi|47225126|emb|CAF98753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 583
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 140/287 (48%), Gaps = 49/287 (17%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L L E G ++E RLM + +GE++G+AFV + +KE A++AI
Sbjct: 75 GCEVFVGKIPRDMYEDELVPLFERAGKLYEFRLMME-FTGENRGYAFVMYTNKEAAQRAI 133
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L + +++ GK I +S RLF+G++PK T+DE ++ + GV + +
Sbjct: 134 QMLDNYKVRPGKFIGVCVSLDNCRLFLGSIPKEKTKDEVLAEMKKLTDGVVDVIMYPSST 193
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKML--------------------------------- 251
+ S+NRGF+FV Y ++ A +R+K++
Sbjct: 194 DKSKNRGFAFVEYKSHKAAAMARRKLIPGTSLSSDSVRGSIVFCPSALGFFFFTSMCVSS 253
Query: 252 -----NANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ-- 304
F+L G + + WA P+ + +V+ LYV+N+ NTS E + + F
Sbjct: 254 GRGCTTGTFQLWGQSIQVDWAQPEKDVEEE-VMQRVRVLYVRNLMLNTSEETLFKAFSHF 312
Query: 305 RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ G V +V D+ F+HY R AL A+ IDG +
Sbjct: 313 KPGSVERV------KKFTDYAFVHYYCREDALAALDPMNGVLIDGAA 353
>gi|414586039|tpg|DAA36610.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
gi|414586040|tpg|DAA36611.1| TPA: RNA recognition water-stress protein1, mRNA isoform 2 [Zea
mays]
gi|414586041|tpg|DAA36612.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
Length = 794
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 137/254 (53%), Gaps = 15/254 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL KDA+E DL + +G++ EVRLM + + ++KGFAF+ + + E A++A+ E
Sbjct: 213 EIFVGGLDKDATENDLMKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSE 272
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE---LIKDPQ 224
L + ++GK + S + LF+GN+ K WT++ + ++ GVE+ + L +D
Sbjct: 273 LKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSY--GVESFDDLLLAEDTN 330
Query: 225 NPSRNRGFSFVLYYNN--ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
NP NRG++ + + A + + + F +D + +S+AD D A QV
Sbjct: 331 NPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGVD-RSAKVSFADSYPQVDDEIMA-QV 388
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKA 338
+ +++ +P + +++K+ +++G + KV MP K ++DFGF+ + +A+
Sbjct: 389 RTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNAVAC 446
Query: 339 VKDTEKYEIDGKSH 352
+ EI H
Sbjct: 447 TEGMSNSEIGEGEH 460
>gi|297611204|ref|NP_001065705.2| Os11g0139500 [Oryza sativa Japonica Group]
gi|108863976|gb|ABG22354.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215767918|dbj|BAH00147.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255679771|dbj|BAF27550.2| Os11g0139500 [Oryza sativa Japonica Group]
Length = 252
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 78/102 (76%), Gaps = 3/102 (2%)
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
M + FKLD N PT+SWADPK+ + S + SQVK++YVKN+P N + ++K LF+ HGE+
Sbjct: 1 MSSPTFKLDSNAPTVSWADPKN--NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEI 58
Query: 310 TKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDTEKYEIDGK 350
KVV+PP + G + +GF+H+ +RS A++A+++TE+YE+DG+
Sbjct: 59 EKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQ 100
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
V++ LPK+ ++ L+ L E G++ +V ++ G + FV F+ + A +A+
Sbjct: 33 SVYVKNLPKNVTQAQLKRLFEHHGEIEKV-VLPPSRGGHDNRYGFVHFKDRSMAMRALQN 91
Query: 168 LHSKELKGKTIRCSLSE 184
EL G+ + CSL++
Sbjct: 92 TERYELDGQVLDCSLAK 108
>gi|356531832|ref|XP_003534480.1| PREDICTED: uncharacterized protein LOC100811387 [Glycine max]
Length = 778
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 141/240 (58%), Gaps = 13/240 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DL+ + +G V EVRLM + ++ +KGFAF+ F + E A++A+ E
Sbjct: 193 EVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVE 252
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + L++GN+ K W ++ ++ ++ G VE + LI+D N
Sbjct: 253 LKNPVINGKRCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVEDVEDLTLIEDDTNE 312
Query: 227 SRNRGFSFVLYYNNACAD--YSRQKMLNANFKLDGNTPTISWADPKSTPDHS-AAASQVK 283
NRGF+F+ + + + A Y R + + F +D +S+AD S D +QVK
Sbjct: 313 GMNRGFAFLEFSSRSDAKEAYKRLQKRDVAFGVD-KPAKVSFAD--SFIDLGDEIMAQVK 369
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAV 339
+++ ++P + + + +++L +++GE+ KV MP + ++++GF+ ++ +A++
Sbjct: 370 TVFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAAR--RKNYGFVTFSTHVAAVECA 427
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI LP +E+ +RDL + G++ +V L KD + K + FV+F + A + D +
Sbjct: 371 VFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAVECADSI 430
Query: 169 HSKEL----KGKTIRCSLS 183
S L K +R LS
Sbjct: 431 TSAGLGEGDKKAKVRARLS 449
>gi|222629297|gb|EEE61429.1| hypothetical protein OsJ_15642 [Oryza sativa Japonica Group]
Length = 730
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 138/260 (53%), Gaps = 26/260 (10%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR + +G++ EVRLM + + ++KGFAF+ + + E A++A+ E
Sbjct: 136 EVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSE 195
Query: 168 LHSKE-----------LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
L + ++GK + S + LF+GN+ K WT++ ++ ++ GVE
Sbjct: 196 LKNPSVGLKIWIFYIMVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSY--GVEN 253
Query: 217 IE---LIKDPQNPSRNRGFSFVLYYNN--ACADYSRQKMLNANFKLDGNTPTISWADPKS 271
+ L++D NP NRG++ + + A + R + + F +D + +S+AD
Sbjct: 254 FDDLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVD-RSAKVSFADSYP 312
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFI 327
D A QV+ +++ +P + +++K+ +++G + KV MP K ++DFGF+
Sbjct: 313 EVDDEIMA-QVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFV 369
Query: 328 HYAERSSALKAVKDTEKYEI 347
+ +A+ EI
Sbjct: 370 TFDTHDNAVACADGITNSEI 389
>gi|356568565|ref|XP_003552481.1| PREDICTED: uncharacterized protein LOC100808583 [Glycine max]
Length = 785
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 139/237 (58%), Gaps = 13/237 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DL+ + +G V EVRLM + ++ +KGFAF+ F + E A++A+ E
Sbjct: 199 EVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVE 258
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + L++GN+ K W ++ ++ ++ G VE + LI+D N
Sbjct: 259 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLIEDGTNE 318
Query: 227 SRNRGFSFVLYYNNACAD--YSRQKMLNANFKLDGNTPTISWADPKSTPDHS-AAASQVK 283
NRGF+F+ + + + A Y R + + F +D +S+AD S D +QVK
Sbjct: 319 GMNRGFAFLEFSSRSDAKEAYRRLQKRDVAFGVD-KPAKVSFAD--SFIDLGDEIMAQVK 375
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSAL 336
++V ++P + +++L +++GE+ K+ MP + ++++GF+ ++ ++A+
Sbjct: 376 TVFVDSLPPSWDEVYVRDLLKKYGEIEKIELAKDMPAAR--RKNYGFVTFSTHAAAV 430
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VF+ LP E +RDL + G++ ++ L KD + K + FV+F + A + D +
Sbjct: 377 VFVDSLPPSWDEVYVRDLLKKYGEIEKIELAKDMPAARRKNYGFVTFSTHAAAVECADSI 436
Query: 169 HSKEL----KGKTIRCSLSETKNRLFIGNVPKNWTEDEFR 204
S L K +R LS ++ K+ +FR
Sbjct: 437 TSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKHVNHGDFR 476
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 136/244 (55%), Gaps = 18/244 (7%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G +P+D E++L L + +++ RLM D +G ++GFAFV++ + A+KA+
Sbjct: 30 GSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMD-FTGNTRGFAFVTYYNVWDAQKAV 88
Query: 166 DELHSKELKGKT----IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+ + + T + LS RLF GNVPK+ T D+ ++ G+ +++I
Sbjct: 89 LKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFIDGI--VKVIT 146
Query: 222 DPQNPSR--NRGFSFVLYYNNACADYSRQKML-NANFKLDGNTPTISWADPKSTPDHSAA 278
P+ + NRGF+FV + ++A A +R+K+L + + G + WA+P+ D
Sbjct: 147 YPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEPEPMVDPD-V 205
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKSGKRD-FGFIHYAERSSAL 336
+QVK LY+KN+P + +++K + GE+ + KRD + FIH+ ERS A
Sbjct: 206 MTQVKVLYMKNVPTFWTLDRLKTYISKTVGEIF-----IERIYKRDNYAFIHFDERSFAE 260
Query: 337 KAVK 340
+A+K
Sbjct: 261 RALK 264
>gi|116781130|gb|ABK21976.1| unknown [Picea sitchensis]
Length = 219
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+EEDLR + +G+V E+RLM + ++ ++KGFAF+ + + E AK+A E
Sbjct: 36 EVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNAQTQKNKGFAFIRYATVEQAKRACTE 95
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
L + ++ GK S S+ + LF+GN+ K WT++ R+ ++ +E + L++DP+N
Sbjct: 96 LKNPQVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSFSIDNIEDLTLVEDPENE 155
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
NRG +F+ + ++A Y R + + D T +S+A+ PD A
Sbjct: 156 GMNRGIAFIEFSARSDAMNAYKRLQKRDVVLGTD-RTAKVSFAETFVDPDEEVMA 209
>gi|297611571|ref|NP_001067623.2| Os11g0250000 [Oryza sativa Japonica Group]
gi|255679961|dbj|BAF27986.2| Os11g0250000 [Oryza sativa Japonica Group]
Length = 94
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 67/81 (82%), Gaps = 4/81 (4%)
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAV 339
QVK +YVKN+P+N S EKIKE+F++HGEVTKVV+PP K G KRDFGF+H+AERSSALKAV
Sbjct: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAV 65
Query: 340 KDTEKYEIDGKSHLHFPVFVL 360
K +EKYE +G F +F++
Sbjct: 66 KGSEKYEFNGNV---FSLFII 83
>gi|222636973|gb|EEE67105.1| hypothetical protein OsJ_24114 [Oryza sativa Japonica Group]
Length = 624
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 131/243 (53%), Gaps = 7/243 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGES-KGFAFVSFRSKEFAKKAI 165
EV +GGLP+DA+EED+ GDV EVRL++D S KGFAFV F + A+ A
Sbjct: 90 CEVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAWQARWAA 149
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQ 224
D++ + +KG+ ++ L + N+ +WT+D+ + ++ +E I L++DP+
Sbjct: 150 DDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPE 209
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVK 283
+NRG++F+ + N + K+ N + L + +S++ S D +VK
Sbjct: 210 RKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSLDD--KIMEKVK 267
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKD 341
++++ +P + +K++E+F + GE+ + + K+ ++DFGFI + R SAL +
Sbjct: 268 SVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCIST 327
Query: 342 TEK 344
K
Sbjct: 328 VSK 330
>gi|313233215|emb|CBY24330.1| unnamed protein product [Oikopleura dioica]
Length = 254
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
L P G+E+FIG LP+D E++L + E G VFE+R+M D +G ++GF FV+++++
Sbjct: 68 LTGKPEKGTEIFIGKLPRDLFEDELYPVLESYGPVFELRMMLD-FNGNNRGFCFVTYQTR 126
Query: 159 EFAKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
++ A+ +++ E+ KG+ + S RLF+G +PK+ DE + ++ V GV +
Sbjct: 127 NESQAALKGINNFEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDEIMEEMKKVTEGVVDV 186
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+ + S+NRGFSFV Y ++ A +R+K++ +L G+ + WA+P
Sbjct: 187 IVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIAVDWAEP 238
>gi|34395354|dbj|BAC84424.1| water-stress protein-like protein [Oryza sativa Japonica Group]
Length = 465
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 131/243 (53%), Gaps = 7/243 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGES-KGFAFVSFRSKEFAKKAI 165
EV +GGLP+DA+EED+ GDV EVRL++D S KGFAFV F + A+ A
Sbjct: 90 CEVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAWQARWAA 149
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQ 224
D++ + +KG+ ++ L + N+ +WT+D+ + ++ +E I L++DP+
Sbjct: 150 DDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPE 209
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVK 283
+NRG++F+ + N + K+ N + L + +S++ S D +VK
Sbjct: 210 RKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSLDD--KIMEKVK 267
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKD 341
++++ +P + +K++E+F + GE+ + + K+ ++DFGFI + R SAL +
Sbjct: 268 SVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCIST 327
Query: 342 TEK 344
K
Sbjct: 328 VSK 330
>gi|359488537|ref|XP_003633774.1| PREDICTED: uncharacterized protein LOC100853981 [Vitis vinifera]
Length = 787
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 121/216 (56%), Gaps = 15/216 (6%)
Query: 130 IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRL 189
G++ EVR+M D ++G+SKG+ FV F +KE A KAI E ++GK I S + L
Sbjct: 200 CGEIIEVRMMTD-QNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTL 258
Query: 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELI-------KDPQNPSRNRGFSFVLYYNNAC 242
F GN+PK+W+ DEF K++ V +++L +NRGF+FV + ++A
Sbjct: 259 FFGNLPKDWSPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAA 318
Query: 243 ADYSRQKMLNANFKL-DGNTPTISWA-DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
A + + ++F L D P + WA +P+ P+ A ++ +V N+P + + + +K
Sbjct: 319 AARAHRMGSKSDFLLGDSWHPVVEWAEEPEIDPEELA---KITIAFVGNLPKDANEDYLK 375
Query: 301 ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+LF G+V KV++ K G+ GF+H+A+RS L
Sbjct: 376 KLFGPFGKVEKVLL--SKKGQSPVGFVHFAKRSCLL 409
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 121/222 (54%), Gaps = 11/222 (4%)
Query: 133 VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFI 191
++E+RLM D + G+++G+AFV + K AK+A+ EL++ E++ G+ + S RLFI
Sbjct: 54 IYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGACCSVDNCRLFI 112
Query: 192 GNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
G +PK +E + I V GV + + + +NRGF+FV Y ++ A +R+K++
Sbjct: 113 GGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 172
Query: 252 NANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEV 309
+L G+ + WA+P+ D + VK LYV+N+ T+ + IK+ F + G V
Sbjct: 173 PGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKILYVRNLMIETTEDTIKKSFGQFNPGCV 231
Query: 310 TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+V RD+ F+H+ R A+ A+ + E++G
Sbjct: 232 ERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSC 267
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Query: 107 SEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
+FIGG+PK E++ + + E + DV DK +++GFAFV + S A
Sbjct: 108 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM--KNRGFAFVEYESHRAAA 165
Query: 163 KAIDELHSK--ELKGKTIRCSLS-----------ETKNRLFIGNVPKNWTEDEFRKVIED 209
A +L +L G I + ET L++ N+ TED +K
Sbjct: 166 MARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQ 225
Query: 210 VGPG-VETIELIKD 222
PG VE ++ I+D
Sbjct: 226 FNPGCVERVKKIRD 239
>gi|242047592|ref|XP_002461542.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
gi|241924919|gb|EER98063.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
Length = 551
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 126/246 (51%), Gaps = 5/246 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+EVF+ GL EED+R + G++ +VR+ D + +SKG+ FV +R AKK +
Sbjct: 267 TEVFVCGLDGSMKEEDVRSVFGWAGEITQVRMAMDARTWKSKGYCFVRYREPSQAKKVVA 326
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQN 225
E ++ K + + +++ + N+ K W +++ K++ G ++ + L+ D N
Sbjct: 327 EFCKWKICWKLCQVEAVDGNDKIVLENIDKKWKKEDIMKLLHKTGVENIDKVTLMADCDN 386
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
P N G++F+ A + K+ T++WA K+ D QVK++
Sbjct: 387 PGYNCGYAFLELETERDAWMAYIKLSRKGVFRRCLNITVAWA--KAMSDRDEEMQQVKSI 444
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-KSGKR-DFGFIHYAERSSALKAVKDTE 343
+V+ IP++ K+ E+F ++G + + V+ +S KR DF F+HY +A+ ++ +
Sbjct: 445 FVEGIPESWDNLKLTEIFSKYGVIQRTVLSHDIQSAKRSDFAFVHYTTHEAAILCLELFD 504
Query: 344 KYEIDG 349
K E+ G
Sbjct: 505 KEELTG 510
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 136 VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNV 194
+R+M D +G ++G+AFV+F +K AK AI +L++ E++ G+ + S RLF+G +
Sbjct: 1 MRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGI 59
Query: 195 PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254
PK +E ++ V GV + + + ++NRGF+FV Y ++ A +R+K+L
Sbjct: 60 PKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGR 119
Query: 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKV 312
+L G+ + WA+P+ D +S VK LYV+N+ +TS E I++ F + G V +V
Sbjct: 120 IQLWGHGIAVDWAEPEVEVDEDTMSS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV 178
Query: 313 VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
RD+ F+H++ R A++A+K +DG
Sbjct: 179 ------KKIRDYAFVHFSNREDAVEAMKALNGKVLDG 209
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 113/209 (54%), Gaps = 10/209 (4%)
Query: 144 SGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDE 202
+G ++G+AFV+F +K AK A+ +L++ E++ G+ + S RLF+G +PK +E
Sbjct: 2 NGNNRGYAFVTFGNKLEAKAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 61
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262
+ V GV + + + S+NRGF+FV Y ++ A +R+K+L +L G+
Sbjct: 62 ILTEMRKVTDGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAI 121
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSG 320
+ WA+P+ D AS VK LYV+N+ T+ E I++ F R G V +V
Sbjct: 122 AVDWAEPEVEVDEDTMAS-VKILYVRNLMLQTTEETIEKEFNSLRPGAVERV------KK 174
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDG 349
RD+ F+H+ +R A+ A+ +DG
Sbjct: 175 IRDYAFVHFTQREDAINAMNALNGKVVDG 203
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 113/202 (55%), Gaps = 4/202 (1%)
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTE 200
+ ++G++KG+AF+ F AK+A+ + E+ GK + E + +F+GN+ KNW
Sbjct: 2 NSKTGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKN 61
Query: 201 DEFRKVIEDVGP-GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259
++ K+++++G ++ + ++ DP N RNRGF+F+ N A + +K+ +
Sbjct: 62 EDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFGKH 121
Query: 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-- 317
++WA+P + PD +VK +Y + IP + EK+++ F++ GE+ VV+
Sbjct: 122 QNIKVAWAEPLNEPDEDEML-KVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLR 180
Query: 318 KSGKRDFGFIHYAERSSALKAV 339
S ++DF F+ Y R +AL+ +
Sbjct: 181 SSKRKDFAFVKYTTREAALECI 202
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 86/170 (50%), Gaps = 23/170 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGE-SKGFAFVSFRSKEFAKKAI 165
+F+G + K+ ED+ L + IG + +V +M D + E ++GFAF+ + + A+ A
Sbjct: 50 IFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAY 109
Query: 166 DELHSKELKGK--TIRCSLSETKN-----------RLFIGNVPKNWTEDEFRKVIEDVGP 212
+L K++ GK I+ + +E N ++ +P +W E++ R + G
Sbjct: 110 KKLQKKDVFGKHQNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFGE 169
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACA-----DYSRQKMLNANFKL 257
+E++ L ++ ++ S+ + F+FV Y A +SR+ + +A K+
Sbjct: 170 -IESVVLARNLRS-SKRKDFAFVKYTTREAALECIESFSREPLHDAECKV 217
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE- 167
V+ +P EE +RD + G++ V L ++ S + K FAFV + ++E A + I+
Sbjct: 146 VYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESF 205
Query: 168 ----LHSKELKGKTIRCSLSE 184
LH E K K ++ SL++
Sbjct: 206 SREPLHDAECKVK-VKVSLAK 225
>gi|307210260|gb|EFN86910.1| APOBEC1 complementation factor [Harpegnathos saltator]
Length = 419
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 10/220 (4%)
Query: 126 LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSE 184
L E +G + E+RLM D SG ++G+AF + A++A L E++ G I S
Sbjct: 3 LLEKVGRLLELRLMLD-FSGSTRGYAFALYEEPRIARRACSVLDGHEIRPGHRIGVVKSM 61
Query: 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
RLF G VPK+ T++EF + + G+ + L + + NRGF FV + ++ A
Sbjct: 62 DNCRLFFGGVPKSKTKEEFLSELTKILDGIIDVYLYPSAHDRTLNRGFIFVEFKDHRAAA 121
Query: 245 YSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
+R+K++ L + + WADP+ P V AL+V+N+ S +K++E+F
Sbjct: 122 MARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVTALFVRNLTLEMSQQKVREVF 181
Query: 304 QRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDT 342
RH V P K K + F FIHY R +A +AV D
Sbjct: 182 HRHTNV-----PILKLKKINHFAFIHYENRGAA-QAVMDI 215
>gi|414589121|tpg|DAA39692.1| TPA: hypothetical protein ZEAMMB73_249765 [Zea mays]
Length = 618
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 149/281 (53%), Gaps = 27/281 (9%)
Query: 78 VEEEEKPTAS-----VGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGD 132
+ E+E+PT S VGE ++ K EVF+ GLP+DA+EED+ GD
Sbjct: 83 IMEDEEPTPSPAEEVVGEGKRRKKRV-------DYEVFVSGLPQDAAEEDVAQALADAGD 135
Query: 133 VFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR-CSLSETKNRLF 190
+ EVRL++D + +KGFAFV F + A+ A ++L +KGK C SET+ L
Sbjct: 136 IEEVRLVRDPADQRLNKGFAFVRFAAAWQARWAANDLREATIKGKACGICKNSETET-LH 194
Query: 191 IGNVPKNWTEDEFRKVIEDVGP----GVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
+ N+ +W++D+ + E + P ++ I LI+ P +NRG++F+ + + A +
Sbjct: 195 LRNICFDWSKDD---LAEKLKPFKLENLDRINLIEHPDRKGKNRGYAFLDFRTHVDAVEA 251
Query: 247 RQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
K+ + L ++ IS+++ S D +VK++++ +P + +K++E+F +
Sbjct: 252 FVKLQKIDLYLGTDSRANISFSNTLSQDD--EIMEKVKSVFLDGVPPHWDEDKVREIFGK 309
Query: 306 HGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKDTEK 344
GE+ + + + ++DFGFI + R SAL +K K
Sbjct: 310 FGEIDSIQLARNMFTAARKDFGFIGFTARQSALDCIKMVNK 350
>gi|321465036|gb|EFX76040.1| hypothetical protein DAPPUDRAFT_32249 [Daphnia pulex]
Length = 225
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 111/239 (46%), Gaps = 14/239 (5%)
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
F G + +D ED+ L E G ++ +RL+ D S S+GF +V+F + E +ID L+
Sbjct: 1 FFGNVLRDVMLEDIIPLFEDCGSIWSLRLVMDPLSTLSRGFGYVNFTTMEAVAVSIDLLN 60
Query: 170 SKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRN 229
LK + N L+IGN+PK+ +D+ + V G+ +
Sbjct: 61 GLILKETGAMQVNANVPNCLYIGNIPKSKDKDDIKTEFSIVSGGILNVI----SAETKLI 116
Query: 230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKN 289
GF V Y + A +++Q++ N K+ G+ + WADP H +K L+V
Sbjct: 117 WGFCLVEYDSIQSAAFAKQQLNNGTIKVFGSDIIVDWADPNEAKKHKI----IKVLHVGI 172
Query: 290 IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
I +S E+IKELF HG + V D+ F+H R A KAV+D +D
Sbjct: 173 ISKRSSMERIKELFGEHGPIQLV------EKFADYAFVHCENRDDAAKAVEDLNDRTVD 225
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 101/175 (57%), Gaps = 7/175 (4%)
Query: 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
GK I +S NRLF+G++PK+ T+++ + V G+ + L P + +NRGF F
Sbjct: 93 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCF 152
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+V+N+ +
Sbjct: 153 LEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-KVKVLFVRNLANTV 211
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +++G
Sbjct: 212 TEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 260
>gi|348580335|ref|XP_003475934.1| PREDICTED: probable RNA-binding protein 46-like [Cavia porcellus]
Length = 436
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 47/248 (18%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G + E RLM + SGE++G+AFV++ +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDEL--VFERAGKIHEFRLMMEF-SGENRGYAFVTYTTKEEAQLAIR 117
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E I+ V GV + + +
Sbjct: 118 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEIKKVTEGVVDVIVYPSATD 177
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y H AAA +VK L
Sbjct: 178 KTKNRGFAFVKY-----------------------------------ESHRAAAMRVKVL 202
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
+V+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 203 FVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVIS 256
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 257 GKCIDGAS 264
>gi|296082223|emb|CBI21228.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 14/223 (6%)
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW 198
M ++G+SKG+ FV F +KE A KAI E ++GK I S + LF GN+PK+W
Sbjct: 1 MMTDQNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDW 60
Query: 199 TEDEFRKVIEDVGPGVETIELI-------KDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
+ DEF K++ V +++L +NRGF+FV + ++A A + +
Sbjct: 61 SPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAAAARAHRMGS 120
Query: 252 NANFKL-DGNTPTISWA-DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
++F L D P + WA +P+ P+ A ++ +V N+P + + + +K+LF G+V
Sbjct: 121 KSDFLLGDSWHPVVEWAEEPEIDPEELA---KITIAFVGNLPKDANEDYLKKLFGPFGKV 177
Query: 310 TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSH 352
KV++ K G+ GF+H+A+RS A+K+ + + G S
Sbjct: 178 EKVLL--SKKGQSPVGFVHFAKRSDLDNAIKEMNEKTVQGPSR 218
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
F+G LPKDA+E+ L+ L P G V +V L K +S FV F + AI E++
Sbjct: 154 FVGNLPKDANEDYLKKLFGPFGKVEKVLLSKKGQS----PVGFVHFAKRSDLDNAIKEMN 209
Query: 170 SKELKGKT 177
K ++G +
Sbjct: 210 EKTVQGPS 217
>gi|195569361|ref|XP_002102678.1| GD19374 [Drosophila simulans]
gi|194198605|gb|EDX12181.1| GD19374 [Drosophila simulans]
Length = 350
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 108/187 (57%), Gaps = 9/187 (4%)
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + + P +
Sbjct: 5 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDK 64
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+VK LY
Sbjct: 65 KKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMSKVKVLY 123
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++ E
Sbjct: 124 VRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMRGLNGKE 177
Query: 347 IDGKSHL 353
I G S++
Sbjct: 178 I-GASNI 183
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 166 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 225
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 226 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 284
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 285 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 332
>gi|256078322|ref|XP_002575445.1| apobec-1 complementation factor-related [Schistosoma mansoni]
gi|350644243|emb|CCD61005.1| apobec-1 complementation factor-related [Schistosoma mansoni]
Length = 771
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 39/255 (15%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D E++L + E IG ++ RLM + +G ++GF F + ++E K
Sbjct: 100 PPRGCEVFIGKIPRDCFEDELIPVFEQIGPIYMFRLMMEL-NGINRGFGFCVYTNREDTK 158
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+A+ EL+ + + K R +E+E ++ V GV+ +
Sbjct: 159 RAVQELNIMKFE-----------KER---------QSEEEILSEMKRVTDGVKDVISYPS 198
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
+ ++NRGF+F+ Y ++ A +R+K+L + L G+ + WA+P+ + S+V
Sbjct: 199 VTDKTKNRGFAFIEYGSHKAAAMARRKLLPGHIHLWGHQIAVDWAEPEREVNED-IMSKV 257
Query: 283 KALYVKNIPDNTSTEKIKELFQRHG--------EVTKVVMPPGKSGKRDFGFIHYAERSS 334
K LYV+N+ +T+ E +++ F + V K+ D+ FIH+ ER
Sbjct: 258 KILYVRNLMLSTTEESLRDSFIKAAGGDPNSVERVKKI---------SDYAFIHFREREQ 308
Query: 335 ALKAVKDTEKYEIDG 349
AL+ + IDG
Sbjct: 309 ALQCLHTLNDTYIDG 323
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 112/208 (53%), Gaps = 10/208 (4%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEF 203
G+++G+AFV + K AK+A+ EL++ E++ G+ + S RLFIG +PK +E
Sbjct: 1 GKNRGYAFVMYCHKSEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 60
Query: 204 RKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263
+ I V GV + + + +NRGF+FV Y ++ A +R+K++ +L G+
Sbjct: 61 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 120
Query: 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGK 321
+ WA+P+ D + VK LYV+N+ T+ + IK+ F + G V +V
Sbjct: 121 VDWAEPEIDVDEDVMET-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKI 173
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDG 349
RD+ F+H+ R A+ A+ + E++G
Sbjct: 174 RDYAFVHFVSREDAVHAMNNLNGTELEG 201
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Query: 107 SEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
+FIGG+PK E++ + + E + DV DK +++GFAFV + S A
Sbjct: 44 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM--KNRGFAFVEYESHRAAA 101
Query: 163 KAIDELHSK--ELKGKTIRCSLS-----------ETKNRLFIGNVPKNWTEDEFRKVIED 209
A +L +L G I + ET L++ N+ TED +K
Sbjct: 102 MARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQ 161
Query: 210 VGPG-VETIELIKD 222
PG VE ++ I+D
Sbjct: 162 FNPGCVERVKKIRD 175
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Query: 158 KEFAKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
KE A++A+ S E+ GK + +S NRLF+G++PKN T++ + V G+
Sbjct: 20 KEAAQEAVKLCDSYEICPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVD 79
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
+ L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 80 VILYHQPDDKKKNRGFRFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 139
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+
Sbjct: 140 VMA-KVKVLFVRNLVTRVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAV 192
Query: 337 KAV 339
KA+
Sbjct: 193 KAM 195
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 200 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 259
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 260 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 318
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 319 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 366
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVAEGLVDVILYHQPDD 124
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 183
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 184 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 231
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 149 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 208
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 209 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 267
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 268 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 315
>gi|242083906|ref|XP_002442378.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
gi|241943071|gb|EES16216.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
Length = 213
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 12/158 (7%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
G DE+D G+EVF+GGLP+ A+E LR++ G++ +VR+MKD ++G SK
Sbjct: 63 GYDEQDPRTA------RGTEVFVGGLPRSATESMLREIFSSCGEIIDVRIMKD-QNGHSK 115
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208
G+ FV F +E+A A + + EL+GK + LS ++ +F GN+ K WT +EF ++I
Sbjct: 116 GYGFVRFSKREYANTAKRQKNGIELQGKRLDVDLSMDQDTVFFGNLCKEWTSEEFEELIH 175
Query: 209 DVGPGVETIELIKDPQNPSR-----NRGFSFVLYYNNA 241
V +++L S NRGF+FV + ++A
Sbjct: 176 KTFKDVVSVDLAMASNRGSSNKRNINRGFAFVRFTSHA 213
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 183
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 184 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 231
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 183
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 184 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 231
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 183
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 184 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 231
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
GK + +S NRLF+G++PKN T++ + V G+ + L P + +NRGF F
Sbjct: 10 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 69
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+V+N+
Sbjct: 70 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLFVRNLATTV 128
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+ E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 129 TEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 167
>gi|444728034|gb|ELW68498.1| Heterogeneous nuclear ribonucleoprotein R [Tupaia chinensis]
Length = 160
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKN 197
M D SG+++G+AF++F KE A++A+ S E++ GK + +S NRLF+G++PKN
Sbjct: 1 MMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKN 60
Query: 198 WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257
T++ + V G+ + L P + +NRGF F+ Y ++ A +R+++++ K+
Sbjct: 61 KTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKV 120
Query: 258 DGNTPTISWADPKSTPDHSAAASQVKAL 285
GN T+ WADP PD A +++L
Sbjct: 121 WGNVVTVEWADPVEEPDPEVMAKFLQSL 148
>gi|157108822|ref|XP_001650402.1| hypothetical protein AaeL_AAEL015050 [Aedes aegypti]
gi|108868501|gb|EAT32726.1| AAEL015050-PA [Aedes aegypti]
Length = 396
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 126/249 (50%), Gaps = 12/249 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+++ +P + +E DL + E G ++E+RLM D S +++ + FV + ++E AK
Sbjct: 103 PGFGCEIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDY-SNQNRRYCFVRYTNEEDAK 161
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI+ L+ ++ +T+ S K RLF+GN+PK+ + P + +
Sbjct: 162 VAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHN 221
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ NRGF+F+ + ++A A ++++ ++ I WA+P+ + DHS +
Sbjct: 222 RISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSLDHS-GVDE 280
Query: 282 VKALYVKNIPDNTSTEKIKELFQR---HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
VK L+V+NI T ++ LF R ++ K+ + R+F F+ +A+R A
Sbjct: 281 VKMLFVRNIDLKVGTSELYNLFVRLVPRQDIIKI------TRVREFAFVEFAKREQAEMV 334
Query: 339 VKDTEKYEI 347
+ + Y +
Sbjct: 335 MHAVQGYVL 343
>gi|170057401|ref|XP_001864467.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876865|gb|EDS40248.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 741
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 129/250 (51%), Gaps = 6/250 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EV+ +P + +E +L + E G ++E+RLM D + +++ + FV + ++E A+
Sbjct: 109 PGYGCEVYAKRIPANFTEVNLVPIFERCGRLYEIRLMMDYNN-QNRRYCFVRYTNEEDAR 167
Query: 163 KAIDELHSKELKG-KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI+ L+ ++G +TI S K RLF+ N+PK + P + + +
Sbjct: 168 LAIELLNHHFVRGNQTIEVQKSFEKCRLFVANLPKELDRKTIEVSFRSLFPEMTRLVMHN 227
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ + NRGF+F+ + ++ A ++++ ++ I WA+P+ DHS A +
Sbjct: 228 RIADGTTNRGFAFMDFPDHGSALRAKKQTTPGCLRMWDRDIKIVWANPQRALDHS-NADE 286
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ ST+++ LF R + +V S R+F F+ + R A A+
Sbjct: 287 VKTLFVRNVDLQVSTKELYMLFSRVVDRQDIV---KISRVREFAFVEFTRRFHAAFAMHA 343
Query: 342 TEKYEIDGKS 351
+ ++++G +
Sbjct: 344 VQGFQLNGYT 353
>gi|157123628|ref|XP_001660235.1| hypothetical protein AaeL_AAEL009575 [Aedes aegypti]
gi|108874325|gb|EAT38550.1| AAEL009575-PA [Aedes aegypti]
Length = 358
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 126/249 (50%), Gaps = 12/249 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+++ +P + +E DL + E G ++E+RLM D S +++ + FV + ++E AK
Sbjct: 103 PGFGCEIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDY-SNQNRRYCFVRYTNEEDAK 161
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI+ L+ ++ +T+ S K RLF+GN+PK+ + P + +
Sbjct: 162 VAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHN 221
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ NRGF+F+ + ++A A ++++ ++ I WA+P+ + DHS +
Sbjct: 222 RISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSLDHS-GVDE 280
Query: 282 VKALYVKNIPDNTSTEKIKELFQR---HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
VK L+V+NI T ++ LF R ++ K+ + R+F F+ +A+R A
Sbjct: 281 VKMLFVRNIDLKVGTSELYNLFVRLVPRQDIIKI------TRVREFAFVEFAKREQAEMV 334
Query: 339 VKDTEKYEI 347
+ + Y +
Sbjct: 335 MHAVQGYVL 343
>gi|307103016|gb|EFN51281.1| hypothetical protein CHLNCDRAFT_141215 [Chlorella variabilis]
Length = 365
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 4/115 (3%)
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSK 158
L+LPP+G+EVFIGGLP+ +E+ LRD GDV +L+KD + +++G+ F+ F +K
Sbjct: 13 LSLPPHGTEVFIGGLPRTITEQQLRDFASEAGDVHSAKLIKDPNNPSQNRGYGFIKFYTK 72
Query: 159 EFAKKAIDELHSKEL---KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
E A A+D LHSKEL +R S+ K++LFIG +P + +E + +++ +
Sbjct: 73 EAAISAMDRLHSKELPDFPSTRVRIQPSQAKHKLFIGGIPHELSREELKDMLDPI 127
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAV 339
VK ++V N+P + ++++++F ++GEV + +P + G +GF+H+ ER++A++AV
Sbjct: 180 VKNVFVGNLPPGATEDRLRDIFNKYGEVERTHIPRPRDGDTHSKYGFVHFRERAAAMRAV 239
Query: 340 KDTEKYEIDG 349
+D EK E+DG
Sbjct: 240 EDVEKPELDG 249
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239
SL +FIG +P+ TE + R + G V + +LIKDP NPS+NRG+ F+ +Y
Sbjct: 13 LSLPPHGTEVFIGGLPRTITEQQLRDFASEAG-DVHSAKLIKDPNNPSQNRGYGFIKFYT 71
Query: 240 NACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA------LYVKNIPDN 293
A + ++ + K PD + +++ L++ IP
Sbjct: 72 KEAAISAMDRLHS-----------------KELPDFPSTRVRIQPSQAKHKLFIGGIPHE 114
Query: 294 TSTEKIKELF 303
S E++K++
Sbjct: 115 LSREELKDML 124
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VF+G LP A+E+ LRD+ G+V + + ++ + FV FR + A +A++++
Sbjct: 183 VFVGNLPPGATEDRLRDIFNKYGEVERTHIPRPRDGDTHSKYGFVHFRERAAAMRAVEDV 242
Query: 169 HSKELKGKTI 178
EL G +
Sbjct: 243 EKPELDGGLL 252
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 30/288 (10%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
+EE+ PT + E K + +G+ +++G L SE L D+ PIG V +R
Sbjct: 17 IEEQTAPTTTESETPK--------VETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIR 68
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRL 189
+ +D + S G+A+V+F E +KAI++L+ +KGK R S+ +
Sbjct: 69 VCRDAITNTSLGYAYVNFHDHEAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI 128
Query: 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249
+I N+ + G + + ++ D S RGF FV + N + A R
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFG-NILSCKVATDDNGVS--RGFGFVHFENESDA---RDA 182
Query: 250 MLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQ 304
+ N L + ++W K D + +VKA +YVKNI TS E+ ++LF
Sbjct: 183 IEAVNGMLMNDQEVYVAWHVSKK--DRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFS 240
Query: 305 RHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
++G++T V+ GK R FGFI++ + S+A +AV + + + G++
Sbjct: 241 KYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQT 288
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 125/278 (44%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I L + L + G++ ++ D ++G S+GF FV F ++ A+ AI+ +
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-DNGVSRGFGFVHFENESDARDAIEAV 186
Query: 169 HSKELKGKTIRCS-----------LSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + + + + L E K + +++ N+ +++EF ++ G +
Sbjct: 187 NGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGK-I 245
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + RGF F+ + +++ A + ++ ++F+ G T + A K
Sbjct: 246 TSAVLEKDSEG--KLRGFGFINFEDHSTAARAVDELNESDFR--GQTLYVGRAQKKHERQ 301
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ A Q L++KN+ D+ EK+K+ F G +T V VM
Sbjct: 302 QELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAGSS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R FGF+ ++ A KA+ + + + GK P++V
Sbjct: 362 RGFGFVCFSTPEEATKAITEKNQQLVAGK-----PLYV 394
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L+D P G + V++MKD E+G S+GF FV F + E A KAI
Sbjct: 321 GVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKD-EAGSSRGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 380 TEKNQQLVAGKPLYVAIAQRK 400
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++L + + +++ + + S+E+ L G + L KD E G+ +GF
Sbjct: 204 KKDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSE-GKLRGFG 262
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
F++F A +A+DEL+ + +G+T+ ++ K+
Sbjct: 263 FINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGV 322
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
LFI N+ + +++ + G + +++++KD S RGF FV +
Sbjct: 323 NLFIKNLDDSIDDEKLKDEFAPFGT-ITSVKVMKDEAGSS--RGFGFVCF 369
>gi|308802151|ref|XP_003078389.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS)
[Ostreococcus tauri]
gi|116056841|emb|CAL53130.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS),
partial [Ostreococcus tauri]
Length = 430
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 23/254 (9%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIG---DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
EVFIG + +A+E+ +R + G +M D+ +G+ +G+AF + E A KA
Sbjct: 152 EVFIGSISLEATEDAVRRALKACGAETGAVGFEMMTDRATGKHRGYAFARYGDPESAAKA 211
Query: 165 IDELHSK--ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK- 221
I+ + S E+ G+ IR S+ K R+F+G + K+ T E + + G G+E EL +
Sbjct: 212 IETIESARVEIGGQKIRASVKPNKTRVFVGGIRKDATRAECVEALRARGAGLEFFELARP 271
Query: 222 -----DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL------DGNTPTISWADPK 270
+ N G + YYN ACA+ + M A KL D T SWA K
Sbjct: 272 KKKKEGVEQTDENGGHGWATYYNEACAERFMKNMREAEDKLPIANESDTRGMTTSWATVK 331
Query: 271 STPDHSAAASQVKALYVKNI-PDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHY 329
++ +A ++ L+V+++ N + E ++E F R G++ V + + + F ++ +
Sbjct: 332 AS---AAKVQGIRTLHVRDLNSTNATEEAMRECFGRFGDIEDVQLRTDR--EPHFAWVTF 386
Query: 330 AERSSALKAVKDTE 343
A + A KA+ + E
Sbjct: 387 ANPNDAEKALGECE 400
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 136/289 (47%), Gaps = 34/289 (11%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
+EE+ PT + E K + +G+ +++G L SE L D+ PIG V +R
Sbjct: 17 IEEQTAPTTTESETPK--------VETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIR 68
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRL 189
+ +D + S G+A+V+F E KAI++L+ +KGK R S+ +
Sbjct: 69 VCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI 128
Query: 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249
+I N+ + G + + ++ D S RGF FV + N + A
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFG-NILSCKVATDENGVS--RGFGFVHFENESDAR----- 180
Query: 250 MLNANFKLDG---NTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKEL 302
+A +DG N + A S D + +VKA +YVKNI TS E+ +EL
Sbjct: 181 --DAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEEL 238
Query: 303 FQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
F ++G++T V+ GK R FGF+++ + ++A KAV + + E G+
Sbjct: 239 FGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQ 287
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 120/278 (43%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I L + L + G++ ++ D E+G S+GF FV F ++ A+ AI+ +
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + + +L +K +++ N+ + +++EF ++ G +
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGK-I 245
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + RGF FV + ++A A + ++ FK G + A K
Sbjct: 246 TSAVLEKDSE--GKLRGFGFVNFEDHAAAAKAVDELNELEFK--GQKLYVGRAQKKYERL 301
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ A Q L+VKN+ D+ EK+KE F G +T VM
Sbjct: 302 QELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R FGF+ ++ A KA+ + + + GK P++V
Sbjct: 362 RGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 394
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +F+ L +E L++ P G + ++M+D E+G S+GF FV F + E A KA
Sbjct: 320 QGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKA 378
Query: 165 IDELHSKELKGKTIRCSLSETK 186
I E + + + GK + ++++ K
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRK 400
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++L + + V++ + ++ S+E+ +L G + L KD E G+ +GF
Sbjct: 204 KKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE-GKLRGFG 262
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F A KA+DEL+ E KG+ + ++ K
Sbjct: 263 FVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKK 297
>gi|357507981|ref|XP_003624279.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499294|gb|AES80497.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 514
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 129/238 (54%), Gaps = 9/238 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL K+A+E DLR + +G++ EVR+ + ++ +KGFA + F + E K+A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 168 LHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQ 224
L + + GK I + + + L++ N+ K+W ++ ++ ++ G + + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 225 NPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
N N G +F+ + ++++ Y R + + F +D +S+A+ A QV
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFANSFIDLGDDIMA-QV 372
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR--DFGFIHYAERSSALKA 338
K +++ +P + + ++ L +++G V KV + G R ++GF+ + ++A++
Sbjct: 373 KTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
>gi|424513446|emb|CCO66068.1| RNA recognition motif family protein, expressed [Bathycoccus
prasinos]
Length = 557
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 138/285 (48%), Gaps = 59/285 (20%)
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRDL--------------C--EPIGDVFEVRLMKD-K 142
L P +GSE+F+GG+PK AS++D+ +L C +P+ +++++KD
Sbjct: 86 LGHPQHGSELFLGGVPKSASDQDVENLFKGSTKGRGKGNTKCPSQPV----DIQVVKDPN 141
Query: 143 ESGESKGFAFVSFRSKEFAKKAIDELHSKELKG------------KTIRCSLSETKNRLF 190
+S ++G+AF F ++ + A L + K IR ++ TK+ LF
Sbjct: 142 DSMRNRGYAFARFGNRGECEDAFQFLSENDGANAVMIDAENNNEEKKIRATIKPTKHVLF 201
Query: 191 IGNVPKNWT-EDEFRKVIEDVGPGVETIELIKDPQNPS-----RNRGFSFVLYYNNACAD 244
+ P T ED +++ G G+ET+ L + + R++G+ F+ Y+N CA+
Sbjct: 202 MSGFPPFATREDIVTELLRVGGAGIETVSLPRASGTGTNGIACRHKGYGFIDYFNQECAE 261
Query: 245 YSRQKMLNAN------FKLDGNTPTIS-WAD--PKSTPDHSAAASQVKALYVKNIP---- 291
+ M N N F + N P ++ WAD + P +Q K++YV IP
Sbjct: 262 ---RAMKNINDKTTRMFNGNANKPVVAKWADVSKEKPPSKEDLLAQSKSVYVGQIPTEGV 318
Query: 292 --DNTSTE-KIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333
D E K++E+F + GEV V +P G + K + F+H+ ERS
Sbjct: 319 ALDEKDLEGKLREVFGQFGEVESVKLPRGDATK-GYAFVHFTERS 362
>gi|355715816|gb|AES05411.1| RNA binding motif protein 46 [Mustela putorius furo]
Length = 149
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI L
Sbjct: 1 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRIL 59
Query: 169 HSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
++ E++ GK I +S RLFIG +PK ++E ++ V GV + + + +
Sbjct: 60 NNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKT 119
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKL 257
+NRGF+FV Y ++ A +R+K++ F+L
Sbjct: 120 KNRGFAFVEYESHRAAAMARRKLIPGTFQL 149
>gi|357122936|ref|XP_003563169.1| PREDICTED: uncharacterized protein LOC100842213 [Brachypodium
distachyon]
Length = 691
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 134/267 (50%), Gaps = 13/267 (4%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
V EE A GEDE + + EVF+ GLP +A EE++ G+V EVR
Sbjct: 87 VVEEAGMMAEAGEDEGRRKKR------KEYEVFVFGLPPEAVEENVAGALAEAGEVEEVR 140
Query: 138 LMKD-KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPK 196
L++D E +KGFAFV F A+ A D+L + ++KGK + L + N+
Sbjct: 141 LVRDPAEPQLNKGFAFVRFAEVWQARWAADDLRTAKIKGKACGICKNNDNETLHLRNICF 200
Query: 197 NWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255
+W++D+ + ++ +E I LI+ P +NRG++F+ + ++ A K+ +
Sbjct: 201 DWSKDDLAENLKTFELENLEDINLIEHPDRKGKNRGYAFLDFSSHVDAVAGFLKLQKRDL 260
Query: 256 KLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314
L + IS+++ S D +VK++++ +P + + ++E F + GE+ + +
Sbjct: 261 YLGTDIKAQISFSNTISQDD--KVMEKVKSVFLDGLPPHWDEDDVREKFGKFGEIDNIQL 318
Query: 315 PPG--KSGKRDFGFIHYAERSSALKAV 339
+ ++DFGFI + R +A+ +
Sbjct: 319 ARNMFTAKRKDFGFISFTTRQAAIDCI 345
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
VF+ GLP E+D+R+ G++ ++L ++ + + K F F+SF +++ A ID
Sbjct: 289 VFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAAIDCID 346
>gi|440800287|gb|ELR21326.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 500
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 133/268 (49%), Gaps = 18/268 (6%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP +F+ + + ++++L+D G V + ++K+K +GE+KGF FV F + +
Sbjct: 49 PPLEYGIFVSDIARGVTDQELKDAFSSAGQVTDALVVKNKFTGETKGFGFVKFATLDAVH 108
Query: 163 KAIDEL------HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
A+D + + +T++ ++ KN L++GN+P+ +ED+ R +++ E
Sbjct: 109 AALDMAVLPSFRDAVSARVQTVKVVRADPKNVLYVGNIPRGLSEDDVRLALQEATTTYEV 168
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN--FKLDGNTPTISWADPKSTPD 274
+ ++G+ + + ++ CA ++L + F L N + A+P++ +
Sbjct: 169 TKFKLCTTLEGESKGYGWATFKDHKCA-VQGMRLLQSTPVFGLYLN---VHMAEPRTQEE 224
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG--FIHYAER 332
A +VK+L+V+ + T+ E +K F E KVV+P + + G F+H+A R
Sbjct: 225 DMLA--RVKSLFVRGVSPTTNAEAMKAFFGDGCE--KVVIPLDVTTRAVLGHAFVHFATR 280
Query: 333 SSALKAVKDTEKYEIDGKSHLHFPVFVL 360
A A++ + ++G+S PV +
Sbjct: 281 QQAEAAMQRCQNATLEGESGAGHPVVAI 308
>gi|313212996|emb|CBY36886.1| unnamed protein product [Oikopleura dioica]
Length = 404
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Query: 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239
CS S RLF+G +PK+ ++E ++ V V + + + ++NRGF+FV Y
Sbjct: 238 CS-SVDNCRLFVGGIPKSRKKEEIMHELKKVTDKVADVIVYPSAADKNKNRGFAFVEYET 296
Query: 240 NACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKI 299
+ A +R+K+++ +L GN + WA+P+ D +VK LYV+N+ TS E +
Sbjct: 297 HKAAAMARRKLVSGRVQLWGNPIAVDWAEPEEDVDDD-IMKEVKVLYVRNLLIETSEESL 355
Query: 300 KELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ F ++G+V +V RD+ F+H+ ER SA AVK +DG
Sbjct: 356 RAHFSQYGQVERV------KKIRDYAFVHFVERESADAAVKAGCSQRLDG 399
>gi|270002294|gb|EEZ98741.1| hypothetical protein TcasGA2_TC001296 [Tribolium castaneum]
Length = 339
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 13/247 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVF+G +P S+++L + G V+ + M D ++G +K FAF+S+ + E A
Sbjct: 28 PPPGSEVFVGNIPSVISDDELIFIFSEAGRVYRFQRMID-DNGNNKPFAFISYHNDEDAN 86
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ H + K + + LS RL+ GN+P+ T+++ + + + + ++
Sbjct: 87 KAVLFFHKFSIRKHRKLNVHLSVNNCRLYFGNIPREMTKEDVMLNLLNFIEKIVKVLVLP 146
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA--DPKSTPDHSAAA 279
N + NRG++FV + ++ A +++++ L G T+ WA +P P
Sbjct: 147 SRCNTALNRGYAFVDFVSHTLAAFAKRQ-LELGLFWGGRHITVEWAYREPLVPP---FIF 202
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKA 338
Q+K L KNIP + S ++ +T V + K+D F+H+ +A A
Sbjct: 203 LQIKCLIFKNIPIDCSRCVFRKFLSLFVHITTV----RRIYKKDSHAFVHFQSWEAAEIA 258
Query: 339 VKDTEKY 345
+K +
Sbjct: 259 IKTLRSH 265
>gi|170034902|ref|XP_001845311.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
gi|167876604|gb|EDS39987.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
Length = 542
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 16/163 (9%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+F G +PK+ EDE + E G + + L+ DP + NRG++FV + SR
Sbjct: 181 VFCGKIPKDMYEDELIPLFEKCGK-IWDLRLMMDPMTGT-NRGYAFVTFT-------SRD 231
Query: 249 KMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
NA ++ G + WADP+ PD S+VK LYV+N+ +TS EK+KE F+ G+
Sbjct: 232 AACNAVREVWGCDIIVDWADPQEEPDEQTM-SKVKVLYVRNLTQDTSEEKLKESFEAFGK 290
Query: 309 VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
V +V +D+ F+H+ +R A+ A+KD + +I+G +
Sbjct: 291 VERV------KKIKDYAFVHFEDRDHAVNAMKDLDGKDINGSA 327
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 98/177 (55%), Gaps = 22/177 (12%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F S++ A
Sbjct: 175 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAC 234
Query: 163 KAIDELHSKEL-------KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+ E+ ++ + + ++S+ K L++ N+ ++ +E++ ++ E G VE
Sbjct: 235 NAVREVWGCDIIVDWADPQEEPDEQTMSKVK-VLYVRNLTQDTSEEKLKESFEAFGK-VE 292
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKS 271
++ IKD ++FV + + D++ M + + K ++G+ +S A P S
Sbjct: 293 RVKKIKD---------YAFVHFEDR---DHAVNAMKDLDGKDINGSAIEVSLAKPPS 337
>gi|440800608|gb|ELR21644.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 417
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 28/249 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FIG L + +E+ LR+ +P G V V + +D+ + S G+ FV +S+E A A +
Sbjct: 65 LFIGDLARGLNEDQLREAFDPFG-VISVEIKRDRVTNYSLGYGFVLLKSREDAGAAKKAM 123
Query: 169 HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
H + + G+ IR ++ LFIG++ + T + R+V GP E +K
Sbjct: 124 HRQVVGGRAIRIGWAQKNTNLFIGDLDPSITSAQLREVFRQFGPIYEEETFVK------- 176
Query: 229 NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVK 288
NR + FV + + A+ ++++M N L I W D A Q ++++
Sbjct: 177 NRNYGFVRFRHRKHAEMAKREMNNK--VLGARAIRIGWGD---------ANYQRHCVHIQ 225
Query: 289 NIPDN----TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHY----AERSSALKAVK 340
P T +E I + F+ G V V +P + R FGFI+Y A +SA +A+
Sbjct: 226 FEPAESEALTESEVIAK-FEEFGTVMSVNLPRNQGQLRGFGFIYYDDTDAGENSAARAIT 284
Query: 341 DTEKYEIDG 349
I G
Sbjct: 285 TLNNSPICG 293
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +FIG L + LR++ G ++E ++ +++ + FV FR ++ A+ A
Sbjct: 142 TNLFIGDLDPSITSAQLREVFRQFGPIYE-----EETFVKNRNYGFVRFRHRKHAEMAKR 196
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNV------PKNWTEDEFRKVIEDVGPGVETIELI 220
E+++K L + IR + + ++ + TE E E+ G T+ +
Sbjct: 197 EMNNKVLGARAIRIGWGDANYQRHCVHIQFEPAESEALTESEVIAKFEEFG----TVMSV 252
Query: 221 KDPQNPSRNRGFSFVLY 237
P+N + RGF F+ Y
Sbjct: 253 NLPRNQGQLRGFGFIYY 269
>gi|326505362|dbj|BAK03068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 601
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 32/224 (14%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F G +P++ E +LRD+ E G VF++ +++DK++GESKG FV+F S++ A
Sbjct: 34 PDAIKMFCGQIPRNMHEAELRDMFEQFGPVFQLNVLRDKQTGESKGCCFVTFYSRKSALD 93
Query: 164 AIDELHS-KELKGK--TIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
A + LH+ + L G I+ ++T+NR LF+G V KN E R + + G +E
Sbjct: 94 AQNALHNLRTLNGSHHPIQMKPADTENRNERKLFVGMVSKNLDEPNIRSLFQSYG-TIED 152
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP-TISWADPKSTPDH 275
+++D ++RG +FV + CA + + M + ++P + +AD
Sbjct: 153 CTVLRDAN--GKSRGCAFVTFQKRQCALNAIKSMHQSQTMEGCSSPLVVKFAD------- 203
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS 319
P + T+KI++ + H PPG S
Sbjct: 204 --------------TPKDKETKKIQQQYTTHNNGLMQQFPPGAS 233
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
++F G +P+N E E R + E GP V + +++D Q ++G FV +Y+ A
Sbjct: 38 KMFCGQIPRNMHEAELRDMFEQFGP-VFQLNVLRDKQT-GESKGCCFVTFYSRKSA-LDA 94
Query: 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
Q L+ L+G+ I P T + + + L+V + N I+ LFQ +G
Sbjct: 95 QNALHNLRTLNGSHHPIQM-KPADTENRNE-----RKLFVGMVSKNLDEPNIRSLFQSYG 148
Query: 308 EVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE 346
+ + +GK R F+ + +R AL A+K + +
Sbjct: 149 TIEDCTVLRDANGKSRGCAFVTFQKRQCALNAIKSMHQSQ 188
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+G+ +FI LP++ ++ DL G + ++ DK + SK F FVSF + A+
Sbjct: 478 PDGANLFIYHLPQEYNDTDLAQAFASYGQIISAKVFVDKTTNRSKCFGFVSFDNPASAQA 537
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI++++ ++ K ++ L + +
Sbjct: 538 AINQMNGFQIGMKRLKVQLKKLR 560
>gi|326501766|dbj|BAK02672.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 682
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 123/237 (51%), Gaps = 7/237 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE-SKGFAFVSFRSKEFAKKAID 166
EVF+ GLP++A E+D+ G+V EVRL++D + +KGFAF F A+ A +
Sbjct: 103 EVFVFGLPREAMEDDVAAALTEAGEVEEVRLVRDPAQPQLNKGFAFARFAEVWQARWAAN 162
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQN 225
+L + +KGK + L + N+ +W++++ + ++ +E I LI+ P
Sbjct: 163 DLRTAMIKGKACGICKNNDNETLHLRNICFDWSKEDLAEKLKTFELENLEDINLIEHPDR 222
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKA 284
RNRG++F+ + ++ A K+ + L + IS+++ S D +VK+
Sbjct: 223 KGRNRGYAFLDFSSHVDAVAGFLKLQKRDLFLGTDVRAQISFSNTISQDD--KVMEKVKS 280
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAV 339
+++ +P + + ++E F + GE+ + + + ++DFGFI + R +AL +
Sbjct: 281 VFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAALGCI 337
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
VF+ GLP E+D+R+ G++ ++L ++ + + K F F+SF +++ A ID
Sbjct: 281 VFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAALGCID 338
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 16/261 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ + E++KELF ++G+ V VM P GKS R FGFI Y + A KA
Sbjct: 190 FTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKS--RGFGFISYEKHEDANKA 247
Query: 339 VKDTEKYEIDGKSHLHFPVFV 359
V+D E++GK+ VFV
Sbjct: 248 VEDMNGTELNGKT-----VFV 263
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 130/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+++++ DP ++RGF F+ Y + A+ + + M +L+G T + A K
Sbjct: 219 -SVKVMTDPT--GKSRGFGFISYEKHEDANKAVEDMNGT--ELNGKTVFVGRAQKKMERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D ++E L++L + G V++M D +G+S+G
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTD-PTGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F F+S+ E A KA+++++ EL GKT+ ++ K
Sbjct: 233 FGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQ 292
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G ++++ R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE----GRSKGFGFVCF 340
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|357507979|ref|XP_003624278.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499293|gb|AES80496.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 822
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL K+A+E DLR + +G++ EVR+ + ++ +KGFA + F + E K+A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 168 LHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET---IELIKD 222
L + + GK I + + + L++ N+ K+W ++ ++ ++ GVE+ + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHY--GVESFKDLTLLED 312
Query: 223 PQNPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
N N G +F+ + ++++ Y R + + F +D +S+A+ A
Sbjct: 313 DNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFANSFIDLGDDIMA- 370
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR--DFGFIHYAERSSALKA 338
QVK +++ +P + + ++ L +++G V KV + G R ++GF+ + ++A++
Sbjct: 371 QVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
Query: 339 V 339
Sbjct: 431 A 431
>gi|124359488|gb|ABN05926.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 824
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL K+A+E DLR + +G++ EVR+ + ++ +KGFA + F + E K+A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 168 LHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET---IELIKD 222
L + + GK I + + + L++ N+ K+W ++ ++ ++ GVE+ + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHY--GVESFKDLTLLED 312
Query: 223 PQNPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
N N G +F+ + ++++ Y R + + F +D +S+A+ A
Sbjct: 313 DNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFANSFIDLGDDIMA- 370
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR--DFGFIHYAERSSALKA 338
QVK +++ +P + + ++ L +++G V KV + G R ++GF+ + ++A++
Sbjct: 371 QVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
Query: 339 V 339
Sbjct: 431 A 431
>gi|322800628|gb|EFZ21595.1| hypothetical protein SINV_12441 [Solenopsis invicta]
Length = 265
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 76/110 (69%), Gaps = 4/110 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D SG ++G+AF++F ++E A+
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
+A+ EL + E+K GK+++ ++S RLF+GN+PK+ ++E ++E+ G
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEE---ILEEFG 262
>gi|357507983|ref|XP_003624280.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499295|gb|AES80498.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 729
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL K+A+E DLR + +G++ EVR+ + ++ +KGFA + F + E K+A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 168 LHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET---IELIKD 222
L + + GK I + + + L++ N+ K+W ++ ++ ++ GVE+ + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHY--GVESFKDLTLLED 312
Query: 223 PQNPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
N N G +F+ + ++++ Y R + + F +D +S+A+ A
Sbjct: 313 DNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFANSFIDLGDDIMA- 370
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR--DFGFIHYAERSSALKA 338
QVK +++ +P + + ++ L +++G V KV + G R ++GF+ + ++A++
Sbjct: 371 QVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
Query: 339 V 339
Sbjct: 431 A 431
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 129/261 (49%), Gaps = 16/261 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVM-PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ KV+M P GKS R FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKS--RGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGKSHLHFPVFV 359
V+D E++GK+ VFV
Sbjct: 248 VEDMNGTELNGKT-----VFV 263
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 131/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+++++ DP ++RGF FV Y + A+ + + M +L+G T + A K+
Sbjct: 219 -SVKVMMDPT--GKSRGFGFVSYEKHEDANKAVEDMNGT--ELNGKTVFVGRAQKKNERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D +E L++L + G V++M D +G+S+G
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMD-PTGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVS+ E A KA+++++ EL GKT+ ++ KN
Sbjct: 233 FGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQ 292
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G ++++ R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE----GRSKGFGFVCF 340
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 129/261 (49%), Gaps = 16/261 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVM-PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ KV+M P GKS R FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKS--RGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGKSHLHFPVFV 359
V+D E++GK+ VFV
Sbjct: 248 VEDMNGTELNGKT-----VFV 263
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 131/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+++++ DP ++RGF FV Y + A+ + + M +L+G T + A K+
Sbjct: 219 -SVKVMMDPT--GKSRGFGFVSYEKHEDANKAVEDMNGT--ELNGKTVFVGRAQKKNERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D +E L++L + G V++M D +G+S+G
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMD-PTGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVS+ E A KA+++++ EL GKT+ ++ KN
Sbjct: 233 FGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQ 292
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G ++++ R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE----GRSKGFGFVCF 340
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|326514108|dbj|BAJ92204.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525627|dbj|BAJ88860.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 132/304 (43%), Gaps = 69/304 (22%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S++ + G+P D E L++ G + + +MKD+ SG S+GF +V+F S E AK ++
Sbjct: 3 SKLVVLGIPWDVDTEGLKEYMSKFGSLDDCIVMKDRSSGRSRGFGYVTFSSVEDAKNVVN 62
Query: 167 ELH-----SKELKGKT----IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
H + E+K T +R S ++ R+F+ +P++ E FR+ + G E
Sbjct: 63 SEHILGDRTLEVKIATPKEEMRASGNKKATRIFVARIPQSVDESMFRRHFQSFG---EIT 119
Query: 218 ELIKDPQNPSR-NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------ 270
+L + S+ +RG FV + + C D ++ N ++DG T + A PK
Sbjct: 120 DLYMPKELGSKEHRGIGFVTFRSAECVD----NVMQENHEIDGTTVVVDRATPKDEEVRH 175
Query: 271 --------------STPDHSAAASQVKAL----------------------------YVK 288
S + AA++ AL +V
Sbjct: 176 PPRRGGAEREGGYGSYNAYITAATRYAALGVPTLYDHPGPAYGRGYLNEPPVSSKKIFVG 235
Query: 289 NIPDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
+P +T+ + + F R G + +P P KSG R FGF+ +AE A + + + +E
Sbjct: 236 RLPQEANTDDLWDYFGRFGRIVDAYIPKDPKKSGHRGFGFVTFAEDGVADRVARRS--HE 293
Query: 347 IDGK 350
I G+
Sbjct: 294 ILGQ 297
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + ++F+G LP++A+ +DL D G + + + KD + +GF FV+F A
Sbjct: 226 PVSSKKIFVGRLPQEANTDDLWDYFGRFGRIVDAYIPKDPKKSGHRGFGFVTFAEDGVAD 285
Query: 163 KAIDELHSKELKGKTI 178
+ H E+ G+ +
Sbjct: 286 RVARRSH--EILGQEV 299
>gi|357133920|ref|XP_003568569.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Brachypodium
distachyon]
Length = 366
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 132/306 (43%), Gaps = 71/306 (23%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S++ + G+P D E LR+ G + + +MKD+ SG S+GF +V+F S+E AK ++
Sbjct: 3 SKLVVLGIPWDVDTEGLREYMSKFGPLDDCIVMKDRSSGRSRGFGYVTFSSEEDAKNVVN 62
Query: 167 ELH-----SKELKGKT----IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
H + E+K T +R S ++ R+F+ +P++ E FR+ + G E I
Sbjct: 63 CEHILGDRTLEVKIATPKEEMRASGNKKATRIFVARIPQSVDESMFRRHFQSFG---EII 119
Query: 218 ELIKDPQNPSR-NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------ 270
+L + S+ +RG FV + + C D ++ +LDG T + A PK
Sbjct: 120 DLYMPKELGSKDHRGIGFVTFRSAECVD----DVMKETHELDGTTVVVDRATPKDEDVRH 175
Query: 271 -----STPDHS-----------AAASQVKAL----------------------------Y 286
P H AA++ AL +
Sbjct: 176 PPRSRRAPVHGDGGYGSYNAYITAATRYAALGVPTLYDHPGQAYGRGYSNEPLVTGKKIF 235
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEK 344
V +P +T+ + + F R G + +P P +SG R FGF+ +A+ A + +
Sbjct: 236 VGRLPQEANTDDLWDYFGRFGRIVDAYIPKDPKRSGHRGFGFVTFADDGVADRVAR--RS 293
Query: 345 YEIDGK 350
+EI G+
Sbjct: 294 HEILGQ 299
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++F+G LP++A+ +DL D G + + + KD + +GF FV+F A +
Sbjct: 230 TGKKIFVGRLPQEANTDDLWDYFGRFGRIVDAYIPKDPKRSGHRGFGFVTFADDGVADRV 289
Query: 165 IDELHSKELKGKTI 178
H E+ G+ +
Sbjct: 290 ARRSH--EILGQEV 301
>gi|194761400|ref|XP_001962917.1| GF14192 [Drosophila ananassae]
gi|190616614|gb|EDV32138.1| GF14192 [Drosophila ananassae]
Length = 852
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 23/216 (10%)
Query: 57 AGASEKDQSAEANRN----DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIG 112
AG + ANRN DDD+ + E + GE E D P+ ++F+G
Sbjct: 340 AGLVNNNNPCSANRNVVAMDDDSCFRMDAETAVVTYGEKEPD---------PDNIKMFVG 390
Query: 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-K 171
+PK E LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K
Sbjct: 391 QVPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVK 450
Query: 172 ELKGK--TIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L G I+ ++++NR LF+G + K E++ RK+ E G +E +++D QN
Sbjct: 451 TLNGMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN 508
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
+++G +FV + A + + L+ N ++G T
Sbjct: 509 -GQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCT 543
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 764 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 823
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 824 AIKAMNGFQVGTKRLKVQLKKPK 846
>gi|313236676|emb|CBY11933.1| unnamed protein product [Oikopleura dioica]
Length = 1059
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 89/153 (58%), Gaps = 17/153 (11%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P G EVF+G +P+D E+++ + E IG ++E+RLM D + G+++GF FV F + A
Sbjct: 68 IPTKGCEVFVGKIPRDLFEDEIFPVFEMIGPIYELRLMMDFD-GKNRGFCFVMFTERSHA 126
Query: 162 KKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
++AI L++ E+ KG+T+ S RLF+G +PK+ ++E ++ V
Sbjct: 127 RQAISRLNNFEIRKGRTLGVCSSVDNCRLFVGGIPKSRKKEEIMHELKKVT--------- 177
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253
++NRGF+FV Y + A +R+K+++
Sbjct: 178 ------NKNRGFAFVEYETHKAAAMARRKLVSG 204
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 14/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L S+ L+ IG V R+ +D + +S G+ +V+F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + L G+ IR S+ K +FI N+ K+ + E G + + +
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR-ILSCK 131
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++ D S+ G+ FV + CA+ + +K+ N + + PK+ A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKI--NNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ LYVKN P T EK+KE+F GE+ + VM + + FGF+ Y + A
Sbjct: 188 KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAEN 247
Query: 338 AVKDTEKYEIDGK 350
AV+ EI+G+
Sbjct: 248 AVRTMHGKEIEGR 260
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ P + E L+++ G++ +MKD E G+SKGF FV + + A+ A+ +
Sbjct: 194 LYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNE-GKSKGFGFVCYLDPDHAENAVRTM 252
Query: 169 HSKELKGKTIRCSLSETK 186
H KE++G+ + C+ ++ K
Sbjct: 253 HGKEIEGRVLYCARAQRK 270
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 130/266 (48%), Gaps = 26/266 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D + ++G++FV + + + AD + ++M N F D + KS D A
Sbjct: 129 VMSDDRG---SKGYAFVHFQSQSAADRAIEEM-NGKFLKD---CKVFVGRFKSRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN D+ E+++E+F +G + V + GK R FGF+ +
Sbjct: 182 LRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGKSHLHFPVFV 359
+A KAV++ E++G+ P+FV
Sbjct: 242 AARKAVEEMNGKEVNGQ-----PIFV 262
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 32/197 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ KD+ A+L + V+I D +E LR++ G + V++M + G+S+G
Sbjct: 173 KSRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTN-SCGKSRG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E A+KA++E++ KE+ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
+L+I N+ +N +++ RK G +I +K Q +++GF + + ++ D
Sbjct: 292 GAKLYIKNLDENIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF--SSSEDA 345
Query: 246 SRQKMLNANFKLDGNTP 262
+R M N ++ G+ P
Sbjct: 346 ARA-MTVMNGRILGSKP 361
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 115/258 (44%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D SKG+AFV F+S+ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG--SKGYAFVHFQSQSAADRAIEEM 157
Query: 169 HSKELK------GKT---------IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LK G+ +R SE N ++I N + ++ R+V G
Sbjct: 158 NGKFLKDCKVFVGRFKSRKDREAELRNKASEFTN-VYIKNFGDDMDDERLREVFSTYGR- 215
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ + SR GF FV + ++ A + ++M N +++G + A K
Sbjct: 216 ILSVKVMTNSCGKSR--GFGFVSFDSHEAARKAVEEM-NGK-EVNGQPIFVGRAQKKVER 271
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ +N EK+++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ A +A+
Sbjct: 332 KGFGLICFSSSEDAARAM 349
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G++++I L ++ +E LR G + V++M+ E G+SKGF + F S E A +A+
Sbjct: 292 GAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSSEDAARAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
++ + L K + +L++
Sbjct: 350 TVMNGRILGSKPLNIALAQ 368
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 14/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L S+ L+ IG V R+ +D + +S G+ +V+F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + L G+ IR S+ K +FI N+ K+ + E G + + +
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++ D S+ G+ FV + CA+ + +K+ N + + PK+ A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKI--NNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ LYVKN P T EK+KE+F GE+ + VM + + FGF+ Y + A
Sbjct: 188 KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAEN 247
Query: 338 AVKDTEKYEIDGK 350
AV+ EI+G+
Sbjct: 248 AVRTMHGKEIEGR 260
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 132/277 (47%), Gaps = 37/277 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K +++L D G + +++ D E+G+SKG+ FV F +E A++AI+++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 169 HSKELKGKTIRCS--LSETK----------NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
++ ++ + + + +T+ N L++ N P ++ +++ + G +++
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGE-IKS 220
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA--------D 268
++KD N +++GF FV Y + A+ + + M +++G + A +
Sbjct: 221 ACVMKD--NEGKSKGFGFVCYLDPDHAENAVRTMHGK--EIEGRVLYCARAQRKEERQEE 276
Query: 269 PKSTPDHSAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKR 322
K + A Q LYVKN+ DN ++++E F HG +T VM + +
Sbjct: 277 LKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSK 336
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
FGF+ +A A +AV D I K P++V
Sbjct: 337 GFGFVCFANPEQAARAVTDMNGTIIGSK-----PLYV 368
>gi|340712736|ref|XP_003394911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Bombus
terrestris]
Length = 270
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 75/110 (68%), Gaps = 4/110 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
+A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E ++E+ G
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEE---ILEEFG 265
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L DL PIG V +R+ +D + S G+A+V+F E K+AI+
Sbjct: 47 TSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQAIE 106
Query: 167 ELHSKELKGKTIRCSLSETKNRLFI---GNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KGK R S+ L GN+ KN +D K + D V + + ++
Sbjct: 107 KLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVFGNILSSKI 166
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D +++GF FV + + A+ + ++A + N I A + + +
Sbjct: 167 ATD--ETGKSKGFGFVHFEEESAAN----EAIDALNGMLLNGQEIYVAPHLTRKERDSQL 220
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA +YVKNI T+ E+ KE F + G VT V + G GK + FGF++Y + +
Sbjct: 221 EETKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHND 280
Query: 335 ALKAVKD 341
A+KAV++
Sbjct: 281 AVKAVEE 287
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 129/276 (46%), Gaps = 34/276 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L +D + L D G++ ++ D E+G+SKGF FV F + A +AID L
Sbjct: 137 IFIKNLNQDIDNKALFDTFSVFGNILSSKIATD-ETGKSKGFGFVHFEEESAANEAIDAL 195
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK +++ N+ T++EF++ +G V
Sbjct: 196 NGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKIGT-V 254
Query: 215 ETIELIKDPQNPSRNRGFSFVLY--YNNAC--------ADYSRQKMLNANFKLDGNTPTI 264
++ L + P + +GF FV Y +N+A A++ Q++ +
Sbjct: 255 TSVALERGPD--GKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQS 312
Query: 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RD 323
+ST A Q L+VKN+ D+ EK++E F G +T V + ++GK +
Sbjct: 313 LKKQYESTRLEKMAKYQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTENGKSKG 372
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
FGF+ ++ A KA+ + + + GK P++V
Sbjct: 373 FGFVCFSSPEEATKAITEKNQQIVAGK-----PLYV 403
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 42 NFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLA 101
N+E+++D + GA KDQ R ++ +K S ++ K+
Sbjct: 274 NYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKY----- 328
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
G +F+ L +E L++ P G++ V++M+ E+G+SKGF FV F S E A
Sbjct: 329 ---QGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRT-ENGKSKGFGFVCFSSPEEA 384
Query: 162 KKAIDELHSKELKGKTIRCSLSETKN 187
KAI E + + + GK + ++++ K+
Sbjct: 385 TKAITEKNQQIVAGKPLYVAIAQRKD 410
>gi|242004750|ref|XP_002423241.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506227|gb|EEB10503.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 487
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 105/204 (51%), Gaps = 4/204 (1%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP+G+E+FI LP D E +L + IG ++EVRL SG ++G+AF+ + A
Sbjct: 23 PPHGTEIFIKNLPDDVFEIELFQIFSTIGRIYEVRL-PVHWSGINRGYAFIRYTKISEAD 81
Query: 163 KAIDELHSKELKGK-TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI E++ K TI+ S RLF+ VP + T +E + + V V+ + +
Sbjct: 82 AAIKAFDMFEIRNKRTIKIERSVDNTRLFLSCVPNDKTSEEIQCDLLTVVDNVKKVYVYP 141
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKML-NANFKLDGNTPTISWADPKSTPDHSAAAS 280
+NPS RG++FV + ++ A +++ + + F L +WA+P + S +
Sbjct: 142 TLENPSIFRGYAFVEFKSHRDAAIAKRILTPDVCFNLFEKKCIAAWANPLPFLNESILKT 201
Query: 281 QVKALYVKNIPDNTSTEKIKELFQ 304
+ L+++N+P + IK++ +
Sbjct: 202 -INILFIRNVPKEIKSNTIKKIIE 224
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVKDTE 343
+++KN+PD+ ++ ++F G + +V +P SG R + FI Y + S A A+K +
Sbjct: 29 IFIKNLPDDVFEIELFQIFSTIGRIYEVRLPVHWSGINRGYAFIRYTKISEADAAIKAFD 88
Query: 344 KYEIDGK 350
+EI K
Sbjct: 89 MFEIRNK 95
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 14/254 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L S+ L+ IG V R+ +D + S G+ +V+F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + L G+ IR S+ K +FI N+ K+ + E G + + +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++ D S+ G+ FV + CA+ + +K+ N + + PK+ A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKI--NNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ LY+KN P T EK+KE+F GE+ + VM + + FGF+ + + A
Sbjct: 188 KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAEN 247
Query: 338 AVKDTEKYEIDGKS 351
AVK EI+G++
Sbjct: 248 AVKTMHGKEIEGRA 261
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 131/277 (47%), Gaps = 37/277 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K +++L D G + +++ D E+G+SKG+ FV F +E A++AI+++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 169 HSKELKGKTIRCS--LSETK----------NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
++ ++ + + + +T+ N L+I N P ++ +++ + G +++
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGE-IKS 220
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------ 270
++KD + +++GF FV + + A+ + + M +++G + A K
Sbjct: 221 ACVMKDSE--GKSKGFGFVCFLDPDHAENAVKTMHGK--EIEGRALYCARAQRKEERQEE 276
Query: 271 -------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKR 322
+ ++ LYVKN+ DN ++++E F HG +T VM + +
Sbjct: 277 LKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSK 336
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
FGF+ +A A +AV D I K P++V
Sbjct: 337 GFGFVCFANPEQAARAVTDMNGTIIGSK-----PLYV 368
>gi|255556436|ref|XP_002519252.1| Flowering time control protein FCA, putative [Ricinus communis]
gi|223541567|gb|EEF43116.1| Flowering time control protein FCA, putative [Ricinus communis]
Length = 811
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 17/177 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +P+ ASEED+R L E G+V EV L+KDK +G+ +G FV + + E A +AI
Sbjct: 161 AKLFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVKYATSEEADRAIR 220
Query: 167 ELHSKELKGKTI-----------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
LH++ I R L + +LF+G++ K TE E ++ G VE
Sbjct: 221 ALHNQHTLPGGIGPIQVRFADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG-HVE 279
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPK 270
+ L++D ++RG FV Y + A + LN +K+ G + P T+ +ADPK
Sbjct: 280 DVYLMRDEMK--QSRGCGFVKYSSREMA-LAAINALNGIYKMRGCDQPLTVRFADPK 333
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG--FIHY 329
+PDH+ S K L+V ++P S E I+ LF++HG V +V + K + G F+ Y
Sbjct: 151 SPDHTECGSFAK-LFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVKY 209
Query: 330 AERSSALKAVK 340
A A +A++
Sbjct: 210 ATSEEADRAIR 220
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 129/261 (49%), Gaps = 16/261 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 132 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAEMGAKAKE 190
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ +++KELF ++G+ V VM P GKS R FGF+ Y + A KA
Sbjct: 191 FTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKS--RGFGFVSYEKHEDANKA 248
Query: 339 VKDTEKYEIDGKSHLHFPVFV 359
V++ E++GK+ VFV
Sbjct: 249 VEEMNGTELNGKT-----VFV 264
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 130/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 159
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ + G +
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTL 219
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP ++RGF FV Y + A+ + ++M +L+G T + A K
Sbjct: 220 -SVKVMTDPTG--KSRGFGFVSYEKHEDANKAVEEMNGT--ELNGKTVFVGRAQKKMERQ 274
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 275 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 333
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 334 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 366
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A++ A + V+I D ++ L++L + G V++M D +G+S+G
Sbjct: 175 KSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRG 233
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVS+ E A KA++E++ EL GKT+ ++ K
Sbjct: 234 FGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQ 293
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G ++++ R++GF FV +
Sbjct: 294 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE----GRSKGFGFVCF 341
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 294 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAV 351
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 352 TEMNGRIVGSKPLYVALAQRK 372
>gi|195035643|ref|XP_001989285.1| GH11642 [Drosophila grimshawi]
gi|193905285|gb|EDW04152.1| GH11642 [Drosophila grimshawi]
Length = 833
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 21/206 (10%)
Query: 72 DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG 131
DDD+ + + + GE E D P+ ++F+G +PK E LR++ E G
Sbjct: 345 DDDSCFRLDSDSAVVTYGEKEPD---------PDNIKMFVGQVPKSMDEAQLREMFEEYG 395
Query: 132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKG--KTIRCSLSETKNR 188
V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I+ ++++NR
Sbjct: 396 PVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENR 455
Query: 189 ----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
LF+G + K E++ RK+ E G G+E +++DP +++G +FV + A
Sbjct: 456 NERKLFVGMLNKKLNENDVRKLFEVHG-GIEECTVLRDPN--GQSKGCAFVTFATKHAAI 512
Query: 245 YSRQKMLNANFKLDGNTP--TISWAD 268
+ + L+ N ++G T + +AD
Sbjct: 513 SAIKVTLSQNKIMEGCTSPLVVKFAD 538
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + E A+
Sbjct: 745 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPESAQM 804
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 805 AIKAMNGFQVGTKRLKVQLKKPK 827
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 14/254 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L S+ L+ IG V R+ +D + S G+ +V+F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + L G+ IR S+ K +FI N+ K+ + E G + + +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++ D S+ G+ FV + CA+ + +K+ N + + PK+ A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKI--NNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ LY+KN P T EK+KE+F GE+ + VM + + FGF+ + + A
Sbjct: 188 KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAEN 247
Query: 338 AVKDTEKYEIDGKS 351
AVK EI+G++
Sbjct: 248 AVKTMHGKEIEGRA 261
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 131/277 (47%), Gaps = 37/277 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K +++L D G + +++ D E+G+SKG+ FV F +E A++AI+++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 169 HSKELKGKTIRCS--LSETK----------NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
++ ++ + + + +T+ N L+I N P ++ +++ + G +++
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGE-IKS 220
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------ 270
++KD + +++GF FV + + A+ + + M +++G + A K
Sbjct: 221 ACVMKDSE--GKSKGFGFVCFLDPDHAENAVKTMHGK--EIEGRALYCARAQRKEERQEE 276
Query: 271 -------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKR 322
+ ++ LYVKN+ DN ++++E F HG +T VM + +
Sbjct: 277 LKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSK 336
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
FGF+ +A A +AV D I K P++V
Sbjct: 337 GFGFVCFANPEQAARAVTDMNGTIIGSK-----PLYV 368
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 14/254 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L S+ L+ IG V R+ +D + S G+ +V+F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + L G+ IR S+ K +FI N+ K+ + E G + + +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++ D S+ G+ FV + CA+ + +K+ N + + PK+ A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKI--NNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ LY+KN P T EK+KE+F GE+ + VM + + FGF+ + + A
Sbjct: 188 KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAEN 247
Query: 338 AVKDTEKYEIDGKS 351
AVK EI+G++
Sbjct: 248 AVKTMHGKEIEGRA 261
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 131/277 (47%), Gaps = 37/277 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K +++L D G + +++ D E+G+SKG+ FV F +E A++AI+++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 169 HSKELKGKTIRCS--LSETK----------NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
++ ++ + + + +T+ N L+I N P ++ +++ + G +++
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGE-IKS 220
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------ 270
++KD + +++GF FV + + A+ + + M +++G + A K
Sbjct: 221 ACVMKDSE--GKSKGFGFVCFLDPDHAENAVKTMHGK--EIEGRALYCARAQRKEERQEE 276
Query: 271 -------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKR 322
+ ++ LYVKN+ DN ++++E F HG +T VM + +
Sbjct: 277 LKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSK 336
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
FGF+ +A A +AV D I K P++V
Sbjct: 337 GFGFVCFANPEQAARAVTDMNGTIIGSK-----PLYV 368
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 133/278 (47%), Gaps = 38/278 (13%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
NG+ +F+G LP + L +L P G + + R++ D +G SKG+ FV + +A +A
Sbjct: 227 NGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEA 286
Query: 165 IDELHSKELKGKTIRCSLS------ETK----NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
I ++ + ++G+ + L+ TK ++L++ N+P ED+ + G V
Sbjct: 287 IKHMNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQ-V 345
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STP 273
++++++D ++G+ FV Y + Q +A F+L+G+ + + +
Sbjct: 346 TSVKVMRD-HATGLSKGYGFVRYSD-------PQHAAHAIFQLNGHLIEGKKMEVRVAAV 397
Query: 274 DHSAAASQVKAL----------------YVKNIPDNTSTEKIKELFQRHGEVT--KVVMP 315
S + + V+A+ YV+N+P +T+K+ LF +G+VT KV M
Sbjct: 398 SSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMD 457
Query: 316 PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353
+ +GF+ +++ A AV + ++G+ L
Sbjct: 458 YTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKIL 495
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 125/273 (45%), Gaps = 40/273 (14%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S V++ LP + + L +L P G V ++ D SG SKG+ FV F A A+
Sbjct: 423 SNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVI 482
Query: 167 ELHSKELKGKTIRCSL--------SETKNR---------LFIGNVPKNWTEDEFRKVIED 209
EL+ ++G+ I + S NR L++ N+P + + K++E
Sbjct: 483 ELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNK---AKLVEL 539
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD- 268
P + Q+ + ++G+ FV + ++ CA M+N ++G T ++ A
Sbjct: 540 FLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAA-EAVAMMNGAL-IEGETISVRVAGL 597
Query: 269 ---PKSTPDHSAAASQVKA--------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317
S+ + S++ A LYV N+P S +K+ LF G++ +VVM
Sbjct: 598 SPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVM--- 654
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
++ F+ YA+ +SA KA+K + Y I+GK
Sbjct: 655 ---YAEYSFVLYADINSAAKALKHMDGYLIEGK 684
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 118/279 (42%), Gaps = 52/279 (18%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++ +P ++ L +L P G + ++ ++ + SKG+ FV F A +A+
Sbjct: 520 SNLYVCNIPSSMNKAKLVELFLPFGRITHA-MVVEQSNNSSKGYGFVKFADSHCAAEAVA 578
Query: 167 ELHSKELKGKTIRCSLS-----------------------ETKN-RLFIGNVPKNWTEDE 202
++ ++G+TI ++ E N RL++ N+P+ + D+
Sbjct: 579 MMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADK 638
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262
+ G ++ + + + +SFVLY + A + + M + ++G
Sbjct: 639 LVSLFMPFGQ-IDRVVMYAE---------YSFVLYADINSAAKALKHM--DGYLIEGKRL 686
Query: 263 TISWADPKSTPDHSAAASQ----------VKALYVKNIPDNTSTEKIKELFQRHGEVTKV 312
+ ++P +A SQ + LYV +P + E++ ++F +GE+ +
Sbjct: 687 VVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGEIVQ- 745
Query: 313 VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
K +G I YA SSA A+ + Y+I G +
Sbjct: 746 ----AKKFDAGYGMIRYANASSAAAAIDHLDGYQIGGST 780
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 114/281 (40%), Gaps = 55/281 (19%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N +++ LP+ S + L L P G + V + + ++FV + A KA
Sbjct: 621 NNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAE--------YSFVLYADINSAAKA 672
Query: 165 IDELHSKELKGKTI---------------RCSLSETK-------NRLFIGNVPKNWTEDE 202
+ + ++GK + CS S +K L++G VP T ++
Sbjct: 673 LKHMDGYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQ 732
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262
++ G E++ Q + G+ + Y N + A + + +++ G+T
Sbjct: 733 LVQIFCLYG------EIV---QAKKFDAGYGMIRYANASSAAAAIDHL--DGYQIGGSTL 781
Query: 263 TI------------SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ ++A TP + + LYV +P +T+K+ ELF G++T
Sbjct: 782 VVRVAGLPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQIT 841
Query: 311 --KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
KVV+ + FGF+ +A+ SA A+ Y +DG
Sbjct: 842 QAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDG 882
>gi|115477046|ref|NP_001062119.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|42408771|dbj|BAD10006.1| putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|113624088|dbj|BAF24033.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|215765667|dbj|BAG87364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201366|gb|EEC83793.1| hypothetical protein OsI_29708 [Oryza sativa Indica Group]
gi|222640778|gb|EEE68910.1| hypothetical protein OsJ_27766 [Oryza sativa Japonica Group]
Length = 362
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GGLP+D +E D G++ + +M+DK + + +GF F+++ + + +D+
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 168 LHSKELKGKTIRCSLSETKN----------RLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+H E GK + + K+ ++F+G +P+ TED+F+ + GP V+
Sbjct: 84 IH--EFNGKQVEIKRTIPKDSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDH- 140
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF-KLDGNTPTISWADPK--STPD 274
++++D Q R+RGF F+++ ++ D + N N L G I A+PK S P
Sbjct: 141 QIMRDHQT-KRSRGFGFIVFSSDQVVD---DLLANGNMIDLAGAKVEIKKAEPKKSSNPP 196
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKEL 302
S+ S ++ Y ++ ++S L
Sbjct: 197 PSSHGSASRSAYGRDSRGHSSGNDYGGL 224
>gi|298709522|emb|CBJ48537.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
Length = 579
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 45/290 (15%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFA 161
P+G E+FI LP A+EE ++ + E G+V +R+M K E + G A V F++++ A
Sbjct: 247 PSGKEIFIDNLPPSATEETVKKVAEEQGGEVVSMRVMMTKDEEPKCAGLALVRFQNRDHA 306
Query: 162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTE--------------------- 200
+A++ L +++ + S N LFIGN+ K WT+
Sbjct: 307 ARALERLPEIKMESNKLEARSSSNANTLFIGNLNKTWTKMDKQLLTARPSGNPNTLFIGG 366
Query: 201 -----------DEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249
EF K ++ G+ E+ D N + NRGF F + + + K
Sbjct: 367 LNRTWKKETVLKEFEKEVD----GIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAK 422
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
+ N I WA+ + + +Y+ + + +++ F +G +
Sbjct: 423 YYKDKLTILENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTI 477
Query: 310 TKVVM--PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
KVV+ G + ++DF I+Y+ +A ++ + GK + P
Sbjct: 478 VKVVVGNQVGTAQRKDFAIINYSAAEAAKTCIESMHGTDFMGKLTVTSPA 527
>gi|195388102|ref|XP_002052729.1| GJ17715 [Drosophila virilis]
gi|194149186|gb|EDW64884.1| GJ17715 [Drosophila virilis]
Length = 831
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 23/207 (11%)
Query: 66 AEANRN----DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DDD+ + + + + GE E D P+ ++F+G +PK E
Sbjct: 335 CSANRNVVSMDDDSCYRLDPDTAVVTYGEKEPD---------PDNIKMFVGQVPKSMDEA 385
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKG--KTI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 386 QLREMFEEYGPVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 445
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 446 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 502
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNT 261
V + A + + L+ N ++G T
Sbjct: 503 VTFATKHAAISAIKVTLSQNKIMEGCT 529
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + E A+
Sbjct: 743 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPESAQM 802
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 803 AIKAMNGFQVGTKRLKVQLKKPK 825
>gi|324501089|gb|ADY40490.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 418
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 176 KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ--NPSRNRGFS 233
K ++ ++S RLFIGN+PK+ +++E ++ GV + P +NRGF
Sbjct: 9 KNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFC 68
Query: 234 FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN 293
F+ + ++ A +++K+ + + WA+ + PD A +VK LYV+N+ +
Sbjct: 69 FLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA-KVKVLYVRNLKEA 127
Query: 294 TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+ E++KE+F HGEV V +D+ FIH+ ER A+KA+
Sbjct: 128 VTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAM 167
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E DL ++ PIG V +R+ +D S +S G+A+V+F+S +KA++
Sbjct: 47 ASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALE 106
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +KGK R S+ + R GN+ KN K + D I K
Sbjct: 107 ELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKI 166
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGN-----TPTISWADPKSTPDHS 276
+ + N +GF FV Y + A + + N N L + P ++ D +S
Sbjct: 167 ATDENGNSKGFGFVHYEESESA---KAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMREL 223
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335
A +YVKNI N +K++E F G ++ + + +SGK R FGF+++ + A
Sbjct: 224 IA--NFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDA 281
Query: 336 LKAVKDTEKYEIDGK 350
+KAV++ +IDG+
Sbjct: 282 VKAVEELNNKDIDGQ 296
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 39/283 (13%)
Query: 105 NGS-EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
NGS +FI L + L D G + ++ D E+G SKGF FV + E AK
Sbjct: 132 NGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKIATD-ENGNSKGFGFVHYEESESAKA 190
Query: 164 AIDELHSKELK------GKTIRCSLSETKNR--------LFIGNVPKNWTEDEFRKVIED 209
AI+ ++ L G + ++K R +++ N+ NW ED+ R+
Sbjct: 191 AIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSP 250
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
G + +I L KD ++RGF FV + + A + +++ N + +DG + A
Sbjct: 251 FGT-ISSIFLSKD--ESGKSRGFGFVNFEKHEDAVKAVEELNNKD--IDGQKLYVGRAQK 305
Query: 270 KS----TPDHSAAAS--------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317
KS + H A+ Q L+VKN+ D+ K++E F+ +G +T +
Sbjct: 306 KSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLD 365
Query: 318 KSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+GK + FGF+ Y+ A KA+ + + + GK P++V
Sbjct: 366 DAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGK-----PLYV 403
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ +++ L N + V++ + + E+ LR+ P G + + L KD ESG+S+GF
Sbjct: 213 KKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKD-ESGKSRGFG 271
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
FV+F E A KA++EL++K++ G+ + ++ K+
Sbjct: 272 FVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKS 307
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L + L + +P G + ++M D ++G+SKGF FV + S E A KAI
Sbjct: 330 GYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLD-DAGKSKGFGFVCYSSPEEATKAI 388
Query: 166 DELHSKELKGKTIRCSLSETK 186
E+H + + GK + +L++ K
Sbjct: 389 TEMHQRMVAGKPLYVALAQRK 409
>gi|213408421|ref|XP_002174981.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
gi|212003028|gb|EEB08688.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
Length = 453
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 30/283 (10%)
Query: 12 DLEEDNYMEEMDDDVEEQVE-EDPEEEGGDGNFEENDDD-----EEYDHSKAGASEKDQS 65
+L +D Y EE + E + E E+E G G EE D + + ++ S + +S
Sbjct: 10 ELFKDLYGEEKESKPEIPAKNEQLEKESGAGESEEAATDGKNAEDSREEKQSIPSPQPRS 69
Query: 66 AEANRNDDDTPHVEEEEKPTASVGEDEKDKH------AQLLALPPNGSE---VFIGGLPK 116
+A DD+ + +PTA V ++ +H AQ P E +FIGGL
Sbjct: 70 VDATSTGDDSYGARQSAEPTAPVEAPQERQHTEQKPAAQEEQQSPFNREDGKMFIGGLNW 129
Query: 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
+ ++E LRD E G+V + +M+D +G S+GF F++F+ + + + + H L GK
Sbjct: 130 ETTDESLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKDPKCVQVVMSKEH--HLDGK 187
Query: 177 TIRCSLS------ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRN 229
I + E ++F+G VP + TE+EFR G ++ T+ + KD P
Sbjct: 188 IIDPKRAIPREEQEKTAKMFVGGVPADCTEEEFRDFFNQFGRVLDATLMMDKDTGRP--- 244
Query: 230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
RGF FV + N A + + M + G + A PK++
Sbjct: 245 RGFGFVTFENEAAVENT---MSQPYITIHGKPVEVKRATPKAS 284
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+GG+P D +EE+ RD G V + LM DK++G +GF FV+F ++ + +
Sbjct: 204 AKMFVGGVPADCTEEEFRDFFNQFGRVLDATLMMDKDTGRPRGFGFVTFENEAAVENTMS 263
Query: 167 E----LHSK--ELKGKTIRCSLSETKNR 188
+ +H K E+K T + S+ + +R
Sbjct: 264 QPYITIHGKPVEVKRATPKASMRDQHDR 291
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 16/261 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KE+F ++G+ V VM P GKS R FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKS--RGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGKSHLHFPVFV 359
V++ E++GK+ VFV
Sbjct: 248 VEEMNGTELNGKT-----VFV 263
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 131/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP ++RGF FV Y + A+ + ++M +L+G T + A K
Sbjct: 219 -SVKVMTDPSG--KSRGFGFVSYEKHEDANKAVEEMNGT--ELNGKTVFVGRAQKKMERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D +E L+++ + G V++M D SG+S+G
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTD-PSGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVS+ E A KA++E++ EL GKT+ ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQ 292
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G ++++ R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE----GRSKGFGFVCF 340
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 130/270 (48%), Gaps = 25/270 (9%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
D K +HA L ++G LP D +E+ L P+G V +R+ +D + S G+
Sbjct: 4 DAKYRHASL----------YVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGY 53
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKV 206
A+V+F + A+K +D ++ ++GK+IR S+ L IGNV KN K+
Sbjct: 54 AYVNFLNLADAQKVLDTMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKM 113
Query: 207 IEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
+ + I K + +RG++FV + + + AD + ++M A K N +
Sbjct: 114 LYEHFSAFGKILSSKVMSDDKGSRGYAFVHFQSQSAADRAIEEMNGALLK---NCRL--F 168
Query: 267 ADPKSTPDHSAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
P A Q KA +Y+KN D+ E++KE+F ++G++ V + SGK
Sbjct: 169 VGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGK 228
Query: 322 -RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+ FGF+ + +A +AV+ +I G+
Sbjct: 229 SKGFGFVSFDTHEAAQRAVEYMNGKDICGQ 258
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ K++ A+L + V+I D +E L+++ G + V++M D SG+SKG
Sbjct: 173 KNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVSF + E A++A++ ++ K++ G+ + ++ K
Sbjct: 232 FGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCR 291
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
+L+I N+ + E++ R+ G ++ +K + R++GF + + +C +
Sbjct: 292 GVKLYIKNLDETIDEEQLRRAFSSFG----SMSRVKVMEEEGRSKGFGLICF---SCPEE 344
Query: 246 SRQKMLNANFKLDGN 260
+ + M N ++ G+
Sbjct: 345 ATKAMAEMNGQVLGS 359
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 111/259 (42%), Gaps = 37/259 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L + G + ++M D + S+G+AFV F+S+ A +AI+E+
Sbjct: 100 VFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSDDKG--SRGYAFVHFQSQSAADRAIEEM 157
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + KNR ++I N + ++ ++V G
Sbjct: 158 NGALLK--NCRLFVGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGK 215
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS- 271
+ +++++ D S+ GF FV + + A + + M + + G + A K+
Sbjct: 216 -IVSVKVMTDSSGKSK--GFGFVSFDTHEAAQRAVEYMNGKD--ICGQMVFVGRAQKKAE 270
Query: 272 -TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ Q+K LY+KN+ + E+++ F G +++V + +
Sbjct: 271 RQAELKQMFEQLKRERFGRCRGVKLYIKNLDETIDEEQLRRAFSSFGSMSRVKVMEEEGR 330
Query: 321 KRDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 331 SKGFGLICFSCPEEATKAM 349
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L + EE LR G + V++M+ E G SKGF + F E A KA+
Sbjct: 292 GVKLYIKNLDETIDEEQLRRAFSSFGSMSRVKVME--EEGRSKGFGLICFSCPEEATKAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K I +L++
Sbjct: 350 AEMNGQVLGSKAINIALAQ 368
>gi|225717924|gb|ACO14808.1| Heterogeneous nuclear ribonucleoprotein Q [Caligus clemensi]
Length = 373
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +P+D E++L L E G ++ +RLM D +G ++G+AF++F K A
Sbjct: 251 VPGNGCEVFCGKIPRDMYEDELIPLFEKCGTIWGLRLMMDLMTGLNRGYAFITFTDKGAA 310
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEF 203
++A+ +L+ EL+ G+ I ++S +RLFIGN+PK ++
Sbjct: 311 QEAVKKLNEHELRGGRRIGVTISFNNHRLFIGNIPKGCDREQL 353
>gi|215712317|dbj|BAG94444.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 436
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 92/182 (50%), Gaps = 24/182 (13%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GGLP+D +E D G++ + +M+DK + + +GF F+++ + + +D+
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 168 LHSKELKGKTIRCSLSETKN----------RLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+H E GK + + K+ ++F+G +P+ TED+F+ + GP V+
Sbjct: 84 IH--EFNGKQVEIKRTIPKDSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDH- 140
Query: 218 ELIKDPQNPSRNRGFSFVLY----------YNNACADYSRQKMLNANFKLDGNTPTISWA 267
++++D Q R+RGF F+++ N D + K+++AN L A
Sbjct: 141 QIMRDHQT-KRSRGFGFIVFSSDQVVDDLLANGNMIDLAGAKLIDANGLLCSLHRAAGGA 199
Query: 268 DP 269
DP
Sbjct: 200 DP 201
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 14/239 (5%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G LP + DL + +G + ++L+K ES S FAFV+F ++E A+KA+ E
Sbjct: 16 IYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGESAPS--FAFVTFENEEDAEKAVREY 73
Query: 169 HSKELKGKTIRCSLS-----ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
EL + IR ET N +F+ N+P+++T + G + + ++ P
Sbjct: 74 KHYELHDRQIRVMRKDERPPETGN-IFVKNLPESFTSKDLDDAFSMFGE-IVSCKVATTP 131
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQV 282
Q S+ G+ FV + A + N N L GN + +P+ S S +
Sbjct: 132 QGKSK--GYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKVSTM 189
Query: 283 -KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
++KN P + +++ +L +++G+VT + P GK + F F ++ SAL A+
Sbjct: 190 FTNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESALNAI 248
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 112/285 (39%), Gaps = 49/285 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP +F+ LP+ + +DL D G++ ++ + G+SKG+ FV F+ K AK
Sbjct: 92 PPETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQ-GKSKGYGFVQFKEKRSAK 150
Query: 163 KAI---DELHSKELKGKTIRCSL-------------SETKNRLFIGNVPKNWTEDEFRKV 206
K I + L+ L G I L S FI N P + E E +
Sbjct: 151 KVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKVSTMFTNCFIKNFPGSVGEKELLDL 210
Query: 207 IEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
+E G KD P +GF+F + + A LNA L G P +
Sbjct: 211 LEKYGKVTSLCFPTKDDGKP---KGFAFANFETHESA-------LNAINGLHGTFPFDNG 260
Query: 267 ADP-------------------KSTPDHSAAASQ--VKALYVKNIPDNTSTEKIKELFQR 305
D + + + Q K LY+ NIP+ E++ +F+
Sbjct: 261 KDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQNYKKNLYITNIPEGFGAEELSNIFKE 320
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
G +T + V G + ++ + +I Y+ A AV+ + +DG
Sbjct: 321 FGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGNEIYLDG 365
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 125/262 (47%), Gaps = 21/262 (8%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK---E 159
P S +++G L KD +E L +L +G V +R+ +D + S G+A+V++ S +
Sbjct: 19 PLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 78
Query: 160 FAKKAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVG 211
A +A++ L+ + GK +R S +FI N+ K G
Sbjct: 79 AADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG 138
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP-K 270
+ + ++ D S +G+ FV + + A AD + Q + K++G I + P +
Sbjct: 139 K-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQK--KIEGK---IVYVAPFQ 190
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHY 329
D A + ++VKN+P + +++ ++ HGE+T VVM K G + FGFI++
Sbjct: 191 KRADRPRARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINF 250
Query: 330 AERSSALKAVKDTEKYEIDGKS 351
+ SA K V+ + E+ GK+
Sbjct: 251 KDAESAAKCVEYLNEREMSGKT 272
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 29/156 (18%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VF+ LP D +++L + G++ +MKD + G SKGF F++F+ E A K ++
Sbjct: 203 TNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGG-SKGFGFINFKDAESAAKCVE 261
Query: 167 ELHSKELKGKTIRCSLSETKN------------------------RLFIGNVPKNWTEDE 202
L+ +E+ GKT+ ++ K L++ N+ +D+
Sbjct: 262 YLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLSDEEVDDD 321
Query: 203 -FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
R++ + G + + +++KD +++GF FV +
Sbjct: 322 ALRELFANSGT-ITSCKVMKD--GSGKSKGFGFVCF 354
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 123 LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK-EFAKKAIDELHSKELKGKTIRCS 181
LR+L G + ++MKD SG+SKGF FV F S E + + E++ K +KGK + +
Sbjct: 323 LRELFANSGTITSCKVMKDG-SGKSKGFGFVCFTSHDEATRPPVTEMNGKMVKGKPLYVA 381
Query: 182 LSETKN 187
L++ K+
Sbjct: 382 LAQRKD 387
>gi|296083224|emb|CBI22860.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 17/177 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +P+ A+EED+R L E G+V EV L+KDK +G+ +G F+ + + E A++AI
Sbjct: 41 AKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIR 100
Query: 167 ELHSK-ELKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
LH++ L G +R + L + +LF+G++ K TE E +++ G VE
Sbjct: 101 ALHNQYTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYG-QVE 159
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPK 270
+ L++D SR GF + + A A + LN + + G + P T+ +ADPK
Sbjct: 160 DVYLMRDELKQSRGCGFVKFSHRDMAMAAIN---ALNGIYTMRGCDQPLTVRFADPK 213
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G+VP+ TE++ R + E+ G V + LIKD + + +G F+ Y + A+ +
Sbjct: 42 KLFVGSVPRTATEEDIRPLFEEHG-NVLEVALIKDKRT-GQQQGCCFIKYATSEEAERAI 99
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + A + K L+V ++ + +++KE+F
Sbjct: 100 RALHN-QYTLPGGVGPIQVRYADGE---RERLGAVEYK-LFVGSLNKQATEKEVKEIFSP 154
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
+G+V V +M R GF+ ++ R A+ A+
Sbjct: 155 YGQVEDVYLMRDELKQSRGCGFVKFSHRDMAMAAI 189
>gi|359477208|ref|XP_002279515.2| PREDICTED: flowering time control protein FCA [Vitis vinifera]
Length = 785
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 17/177 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +P+ A+EED+R L E G+V EV L+KDK +G+ +G F+ + + E A++AI
Sbjct: 118 AKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIR 177
Query: 167 ELHSK-ELKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
LH++ L G +R + L + +LF+G++ K TE E +++ G VE
Sbjct: 178 ALHNQYTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYG-QVE 236
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPK 270
+ L++D SR GF + + A A + LN + + G + P T+ +ADPK
Sbjct: 237 DVYLMRDELKQSRGCGFVKFSHRDMAMAAIN---ALNGIYTMRGCDQPLTVRFADPK 290
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G+VP+ TE++ R + E+ G V + LIKD + + +G F+ Y + A+ +
Sbjct: 119 KLFVGSVPRTATEEDIRPLFEEHG-NVLEVALIKDKRT-GQQQGCCFIKYATSEEAERAI 176
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + A + K L+V ++ + +++KE+F
Sbjct: 177 RALHN-QYTLPGGVGPIQVRYADGE---RERLGAVEYK-LFVGSLNKQATEKEVKEIFSP 231
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
+G+V V +M R GF+ ++ R A+ A+
Sbjct: 232 YGQVEDVYLMRDELKQSRGCGFVKFSHRDMAMAAI 266
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 16/243 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + ++ L DL +G V VR+ +D +G S G+ +V++ +++ A +AID
Sbjct: 40 TSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAID 99
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ L KTIR S+S +FI N+ K+ + G TI
Sbjct: 100 VLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFG----TII 155
Query: 219 LIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K + S +++G+ FV Y + A + K LN D + K D
Sbjct: 156 SCKIATDASGQSKGYGFVQYDSEEAAQTAIDK-LNGMLMNDKQV-YVGVFLRKQDRDSEM 213
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
+ ++ +YVKN+ D+TS + +++ F +G +T VV+ GK + FGF+++ A
Sbjct: 214 SKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAA 273
Query: 337 KAV 339
KAV
Sbjct: 274 KAV 276
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 127/278 (45%), Gaps = 40/278 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L + G + ++ D SG+SKG+ FV + S+E A+ AID+L
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATD-ASGQSKGYGFVQYDSEEAAQTAIDKL 188
Query: 169 HSKELKGKTIRCS-----------LSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ + K + +S+TK N +++ N+ + +ED+ RK + G + +
Sbjct: 189 NGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGT-ITS 247
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
+ +++D +++ F FV + N A + LN K D + A KS
Sbjct: 248 VVVMRDADG--KSKCFGFVNFENPEDAAKAVDA-LNGK-KFDDKEWYVGKAQKKSEREVE 303
Query: 272 -------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGK 321
T Q LYVKN+ D EK+KELF +G +T VM P G S
Sbjct: 304 LKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGIS-- 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R GF+ ++ A +A+ E++GK + P++V
Sbjct: 362 RGSGFVAFSTPEEASRALG-----EMNGKMIVSKPLYV 394
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E L++L G + ++M+D SG S+G FV+F + E A +A+
Sbjct: 321 GVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRD-PSGISRGSGFVAFSTPEEASRAL 379
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + K + +L++ K
Sbjct: 380 GEMNGKMIVSKPLYVALAQRK 400
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 129/264 (48%), Gaps = 21/264 (7%)
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
+A + +++G L D +E+ L +G V +R+ +D + S G+A+V+F
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 160 FAKKAIDELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVG 211
A+KA+D ++ +KGK+IR S+ L FI N+ K+ + G
Sbjct: 63 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
+ + +++ D Q +RG++FV + N AD + ++M A K + K+
Sbjct: 123 K-ILSSKVMSDDQG---SRGYAFVHFQNQIAADRAIEEMNGALLK----DCRLFVGRFKN 174
Query: 272 TPDHSA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGF 326
D A A++ +Y+KN D+ E++KE+F ++G+ V + SGK + FGF
Sbjct: 175 RKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGF 234
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+ + +A KAV++ +I+G+
Sbjct: 235 VSFDSHEAAKKAVEEMNGKDINGQ 258
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + V+I D +E L+++ G V++M+D SG+SKG
Sbjct: 173 KNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVSF S E AKKA++E++ K++ G+ + ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQ 291
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ + +++ R+ G +I +K Q R++GF + +
Sbjct: 292 GVKLYIKNLDETIDDEKLRREFSSFG----SISRVKVMQEEGRSKGFGLICF 339
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + S+G+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEM 157
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + KNR ++I N + ++ ++V G
Sbjct: 158 NGALLK--DCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGK 215
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS- 271
+ ++++++D S+ GF FV + ++ A + ++M + ++G + A K+
Sbjct: 216 TL-SVKVMRDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGKD--INGQLLFVGRAQKKAE 270
Query: 272 -TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ Q+K LY+KN+ + EK++ F G +++V + +
Sbjct: 271 RQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGR 330
Query: 321 KRDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 331 SKGFGLICFSSPEEATKAM 349
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L + +E LR G + V++M+ E G SKGF + F S E A KA+
Sbjct: 292 GVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ--EEGRSKGFGLICFSSPEEATKAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 350 TEMNGRILGSKPLNIALAQ 368
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 18/255 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KAID
Sbjct: 38 ASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAID 97
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KG+ R S+ L GN+ KN D K + D V + + ++
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI 157
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D +++GF FV + A ++ ++A + N I A S + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ EK +E+F + G + + GK + FGF++Y
Sbjct: 212 EETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHED 271
Query: 335 ALKAVKDTEKYEIDG 349
A+KAV+ + +++G
Sbjct: 272 AVKAVEALNESDLNG 286
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGP-I 245
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y N+ A + + + ++ L+G + A K+
Sbjct: 246 VSASLEKDAD--GKLKGFGFVNYENHEDAVKAVEALNESD--LNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 394
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRS-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRK 400
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ +QL + + +++ + + ++E +++ G + L KD + G+ KGF F
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDAD-GKLKGFGF 263
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
V++ + E A KA++ L+ +L G+ + ++ KN
Sbjct: 264 VNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKN 298
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 127/259 (49%), Gaps = 16/259 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN + +++G L +E L +L IG V +R+ +D + S G+A+V++ S ++
Sbjct: 50 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 109
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A++EL+ +KGK R S+ + GN+ KN K + D I
Sbjct: 110 ALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILS 169
Query: 220 IKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ S +RG+ FV +Y A A + K +N L+ + PK D +
Sbjct: 170 CKVAQDESGGSRGYGFV-HYETAEAANAAIKSVNGML-LNEKKVFVGHHIPKK--DRMSK 225
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI T+ ++ +ELF+++GE+T + + GK R FGF++Y
Sbjct: 226 FEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHE 285
Query: 334 SALKAVKDTEKYEIDGKSH 352
A KAV E +ID KS
Sbjct: 286 DANKAVD--ELNDIDFKSQ 302
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 77/155 (49%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + ++++ R+L E G++ L +D+E G+ +GF
Sbjct: 219 KKDRMSKFEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQE-GKVRGFG 277
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV++ E A KA+DEL+ + K + + ++ K+
Sbjct: 278 FVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGV 337
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L++ N+ + ++E RKV E G + + ++++D
Sbjct: 338 NLYVKNLADDIDDEELRKVFEAYG-SITSAKVMRD 371
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
G+SKGF FV F + + A KA+ EL+ K + GK + +L++ K
Sbjct: 429 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRK 470
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 125/280 (44%), Gaps = 42/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L KD + + D G++ ++ D E+G SKG+AFV F ++E A +AI+++
Sbjct: 109 IFIKNLEKDIDNKAIYDTFSAFGNILSCKIALD-ENGNSKGYAFVHFETQEAANRAIEKV 167
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + +L+ L++ N + ++DEFR + E G V
Sbjct: 168 NGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIV 227
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + D ++RGF FV Y + A + + + F L ++ A KS +
Sbjct: 228 SCVVMRDDS---GKSRGFGFVSYETHEAAQKAVETLNEKEFDL--RRMYVARAQKKS--E 280
Query: 275 HSAAAS--------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKS 319
SA Q LYVKN+ D K+++ F G +T VM K
Sbjct: 281 RSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKG 340
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R FGF+ ++ A KAV E++G+ + P++V
Sbjct: 341 ISRGFGFVCFSSPEEATKAVT-----EMNGRIIISKPLYV 375
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 119/248 (47%), Gaps = 10/248 (4%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L D +E L + G + +R+ +D + S G+A+V+F+ A++A+D L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 169 HSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ + GK R S+ + R +GN+ KN +D K I D I K
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIAL 140
Query: 225 NPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQ 281
+ + N +G++FV + A+ + +K+ L G + + + A++
Sbjct: 141 DENGNSKGYAFVHFETQEAANRAIEKV--NGMLLSGKKVFVGHFMSRKERMEKIGNLAAK 198
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
LYVKN D+ S ++ ++LF++ G++ V+ SGK R FGF+ Y +A KAV+
Sbjct: 199 YTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVE 258
Query: 341 DTEKYEID 348
+ E D
Sbjct: 259 TLNEKEFD 266
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 109/240 (45%), Gaps = 33/240 (13%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ ++ L + +++ D S+++ RDL E G + +M+D +SG+S+GF F
Sbjct: 186 KERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRD-DSGKSRGFGF 244
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------R 188
VS+ + E A+KA++ L+ KE + + + ++ K+
Sbjct: 245 VSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVN 304
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++ N+ + + R+ + G + + +++ D + S RGF FV + + + + +
Sbjct: 305 LYVKNLDDVIDDAKLRQEFANFGT-ITSAKVMSDEKGIS--RGFGFVCF---SSPEEATK 358
Query: 249 KMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
+ N ++ + P ++ A K AA V+ + IP + ++FQ+ G
Sbjct: 359 AVTEMNGRIIISKPLYVALAQRKEDRKAQLAAQYVQRMSTLRIPQ-PGQPGVNQMFQQGG 417
>gi|74194008|dbj|BAE36923.1| unnamed protein product [Mus musculus]
Length = 368
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 85/149 (57%), Gaps = 11/149 (7%)
Query: 201 DEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260
+EF KV E G+ + L P + +NRGF F+ Y ++ A +R+++++ K+ GN
Sbjct: 6 EEFSKVTE----GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN 61
Query: 261 TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
T+ WADP PD A +VK L+V+N+ + + E +++ F + G++ +V
Sbjct: 62 VGTVEWADPIEDPDPEVMA-KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KK 114
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+D+ FIH+ ER A+KA+++ +++G
Sbjct: 115 LKDYAFIHFDERDGAVKAMEEMNGKDLEG 143
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 145/310 (46%), Gaps = 24/310 (7%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S A A++ +S E D ++E + + GED D LP + +++G L
Sbjct: 2 SAAEANQVQESLEKLNLDSAPVAIQETNVSSGNEGEDAADS----TQLPDTSASLYVGEL 57
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
+E L ++ P+G V +R+ +D + +S G+A+V+F E +KAID+L+ +
Sbjct: 58 NPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLID 117
Query: 175 GKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
G+ R S+ + +FI N+ G + + ++ D Q
Sbjct: 118 GRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGK-ILSCKVATDEQGN 176
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA-- 284
S + F FV Y A+ +R + N N L N + S D + ++KA
Sbjct: 177 S--KCFGFVHY---ETAEAARAAIENVNGMLL-NDREVYVGKHVSKKDRESKFEEMKANF 230
Query: 285 --LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
+YVKNI S E+++ LF+ +G++T + + GK + FGF+++ +A+KAV++
Sbjct: 231 TNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEE 290
Query: 342 TEKYEIDGKS 351
+I+G++
Sbjct: 291 LNDKDINGQN 300
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + SEE++R+L EP G + + L KD E G+SKGF
Sbjct: 216 KKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAE-GKSKGFG 274
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F S E A KA++EL+ K++ G+ + ++ K
Sbjct: 275 FVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKK 309
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 124/278 (44%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G SK F FV + + E A+ AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EQGNSKCFGFVHYETAEAARAAIENV 198
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + E+K +++ N+ ++E+E R + E G +
Sbjct: 199 NGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGK-I 257
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++ L KD + +++GF FV + ++ A + +++ + + ++G + A K
Sbjct: 258 TSLHLEKDAE--GKSKGFGFVNFESHEAAVKAVEELNDKD--INGQNLYVGRAQKKRERI 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L+VKN+ D+ + K++E F+ G +T + + GK
Sbjct: 314 EELKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + GK P++V
Sbjct: 374 KGFGFVCFSSPEEATKAITEMNQRMFHGK-----PLYV 406
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L L + +P G + R+M D E G+SKGF FV F S E A KAI
Sbjct: 333 GVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVD-EHGKSKGFGFVCFSSPEEATKAI 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + GK + +L++ K+
Sbjct: 392 TEMNQRMFHGKPLYVALAQRKD 413
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 18/255 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KAI+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KG+ R S+ L GN+ KN D K + D V + + ++
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI 157
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D +++GF FV + A ++ ++A + N I A S + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDG 349
A+KAV+ E++G
Sbjct: 272 AVKAVEALNDSELNG 286
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 394
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ +QL + + +++ + + ++E ++L G + L KD + G+ KGF F
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGF 263
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
V++ E A KA++ L+ EL G+ + ++ KN
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN 298
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 18/255 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KAI+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KG+ R S+ L GN+ KN D K + D V + + ++
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI 157
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D +++GF FV + A ++ ++A + N I A S + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDG 349
A+KAV+ E++G
Sbjct: 272 AVKAVEALNDSELNG 286
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 394
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ +QL + + +++ + + ++E ++L G + L KD + G+ KGF F
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGF 263
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
V++ E A KA++ L+ EL G+ + ++ KN
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN 298
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 18/255 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KAI+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KG+ R S+ L GN+ KN D K + D V + + ++
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI 157
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D +++GF FV + A ++ ++A + N I A S + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDG 349
A+KAV+ E++G
Sbjct: 272 AVKAVEALNDSELNG 286
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 394
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ +QL + + +++ + + ++E ++L G + L KD + G+ KGF F
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGF 263
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
V++ E A KA++ L+ EL G+ + ++ KN
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN 298
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 128/256 (50%), Gaps = 19/256 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIR--------CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR C +FI N+ ++ + G + + +
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSA 277
++ D Q ++G++FV + N + AD + ++M N D + + K +
Sbjct: 129 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM-NGKLLKDCKVFVGRFKNRKDREAELRN 184
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSS 334
AS+ +Y+KN D+ E+++E+F ++G+ V VM P GKS + FGF+ + +
Sbjct: 185 KASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKS--KGFGFVSFDNHEA 242
Query: 335 ALKAVKDTEKYEIDGK 350
A KAV++ +I+G+
Sbjct: 243 AQKAVEEMNGKDINGQ 258
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 113/259 (43%), Gaps = 37/259 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ K LK + + KNR ++I N + ++ R+V G
Sbjct: 158 NGKLLK--DCKVFVGRFKNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGK 215
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-- 270
+ +++++ DP S+ GF FV + N+ A + ++M + ++G + A K
Sbjct: 216 TL-SVKVMTDPSGKSK--GFGFVSFDNHEAAQKAVEEMNGKD--INGQLIFVGRAQKKVE 270
Query: 271 ----------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
Q LY+KN+ D EK+++ F G +++V + +
Sbjct: 271 RQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEGQ 330
Query: 321 KRDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 331 SKGFGLICFSSPEEATKAM 349
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + V+I D +E LR++ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTD-PSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF + E A+KA++E++ K++ G+ I ++ K
Sbjct: 232 FGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ RK G +I +K Q +++GF + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEEATKAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +LS+
Sbjct: 350 TEMNGQILGSKPLNIALSQ 368
>gi|321465027|gb|EFX76031.1| hypothetical protein DAPPUDRAFT_23823 [Daphnia pulex]
Length = 177
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P V L E L L E G ++E+RL+ D + ++G+AFV+F + E AK+
Sbjct: 32 PLQCTVVCENLHNSVLEHHLIPLLEKCGTIWEIRLIMDTVTNLNRGYAFVTFTTTEAAKE 91
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
A+++LH E++G+ ++ LS ++ RLF+GN+P + ++ E G+ + + K P
Sbjct: 92 AVNQLHDFEMRGRHMKVRLSVSELRLFVGNIPNSKSKVEIMAEFNKFAAGLTEVIIYKSP 151
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKM 250
+ N GF F+ Y ++ A ++Q++
Sbjct: 152 -DLEENGGFCFLEYDSHKSASMAKQRL 177
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 18/255 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KAI+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KG+ R S+ L GN+ KN D K + D V + + ++
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI 157
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D +++GF FV + A ++ ++A + N I A S + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDG 349
A+KAV+ E++G
Sbjct: 272 AVKAVEALNDSELNG 286
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 394
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRK 400
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ +QL + + +++ + + ++E ++L G + L KD + G+ KGF F
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGF 263
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
V++ E A KA++ L+ EL G+ + ++ KN
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN 298
>gi|283838931|gb|ADB44797.1| FCA [Vitis vinifera]
Length = 281
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 17/177 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +P+ A+EED+R L E G+V EV L+KDK +G+ +G F+ + + E A++AI
Sbjct: 102 AKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIR 161
Query: 167 ELHSK-ELKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
LH++ L G +R + L + +LF+G++ K TE E +++ G VE
Sbjct: 162 ALHNQYTLPGGVGPIEVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQ-VE 220
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPK 270
+ L++D SR GF + + A A + LN + + G + P T+ +ADPK
Sbjct: 221 DVYLMRDELKQSRGCGFVNFSHRDMAMAAIN---ALNGIYTMKGCDQPLTVRFADPK 274
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G+VP+ TE++ R + E+ G V + LIKD + + +G F+ Y + A+ +
Sbjct: 103 KLFVGSVPRTATEEDIRPLFEEHG-NVLEVALIKDKRT-GQQQGCCFIKYATSEEAERAI 160
Query: 248 QKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ + N G P + +AD + A + K L+V ++ + +++KE+F +
Sbjct: 161 RALHNQYTLPGGVGPIEVRYADGER---ERLGAVEYK-LFVGSLNKQATEKEVKEIFSPY 216
Query: 307 GEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
G+V V +M R GF++++ R A+ A+
Sbjct: 217 GQVEDVYLMRDELKQSRGCGFVNFSHRDMAMAAI 250
>gi|185135189|ref|NP_001118133.1| dead-end [Oncorhynchus mykiss]
gi|116089887|gb|ABJ55663.1| dead-end [Oncorhynchus mykiss]
Length = 364
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 9/179 (5%)
Query: 100 LALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
L PP G EVFI +P+D E+ L L +G ++E RLM + SG+++GFA+ + S
Sbjct: 45 LGAPPGPGCEVFISQIPRDVFEDQLIPLFRAVGPLWEFRLMMNF-SGQNRGFAYAKYDSP 103
Query: 159 EFAKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
A AI LH + L G + S K +L +G +P + ++ +V+ D GVE +
Sbjct: 104 ASAAAAIRSLHGRALESGARLSVRRSTEKRQLCLGELPTSTRREQLLQVLLDFSEGVEGV 163
Query: 218 ELIKDPQNPSRNRGFS-FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
L P R +G S V+Y ++ A +++ ++ A K G T+ W S P H
Sbjct: 164 SLRAGP----REQGLSAVVVYASHHAASMAKKVLIEAFKKRFGLAITLKWQS-SSRPKH 217
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 12/259 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D E++KE+F+++G+ V + SGK R FGF+ + + A KAV+
Sbjct: 190 FTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVE 249
Query: 341 DTEKYEIDGKSHLHFPVFV 359
+ E++GK+ VFV
Sbjct: 250 EINGTELNGKT-----VFV 263
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I + +E L+++ E G V++M D SG+S+G
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTD-SSGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVSF E A KA++E++ EL GKT+ ++ K
Sbjct: 233 FGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQ 292
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 132/279 (47%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N +++ +++ E G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+++++ D + ++RGF FV + + A+ + ++ +N +L+G T + A K
Sbjct: 219 -SVKVMTD--SSGKSRGFGFVSFEKHEDANKAVEE-INGT-ELNGKTVFVGRAQKKMERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG++ +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S L +GN+ KN K + D +I K
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST----PDHSAA 278
N +RGF FV + + A QK +N + N + KS + A
Sbjct: 131 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ N +++++LF + G + V VM R FGF+++ + A K
Sbjct: 187 ALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVDHMNGKEVSGQ 259
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 114/289 (39%), Gaps = 62/289 (21%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + +++ ++ S+GF FV F + E A+KAI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ + +++ N+ N E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG-NM 217
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
+++++++D SR GF FV LY A RQ
Sbjct: 218 QSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ + E++KE+F +G +T
Sbjct: 276 LKRRFE--------------QMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVIT 321
Query: 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ S + FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTESSHSKGFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + +++ L + E+ L+DL G++ V++M+D +G+S+G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL--------SETKNR------------- 188
F FV+F E A+KA+D ++ KE+ G+ + SE K R
Sbjct: 233 FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + ++ ++V G I K S ++GF FV +
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYG----VITSAKVMTESSHSKGFGFVCF 340
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E L+++ G + ++M ES SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ V VM P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKS--KGFGFVSFEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ +I+GK
Sbjct: 248 VEEMNGKDINGK 259
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D +E L++L G V++M D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL--------SETKNR------------- 188
F FVSF E A KA++E++ K++ GK + +E K R
Sbjct: 233 FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTDPTG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|297676168|ref|XP_002816016.1| PREDICTED: dead end protein homolog 1 [Pongo abelii]
Length = 353
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ V VM P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKS--KGFGFVSFEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ +I+GK
Sbjct: 248 VEEMNGKDINGK 259
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D +E L++L G V++M D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A KA++E++ K++ GK + ++ K
Sbjct: 233 FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVMLED----GRSKGFGFVCF 340
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTDPTG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|355691671|gb|EHH26856.1| hypothetical protein EGK_16927 [Macaca mulatta]
Length = 353
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPLNLTRSALLLALQPLGPGLQEARLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>gi|402872762|ref|XP_003900273.1| PREDICTED: dead end protein homolog 1 [Papio anubis]
gi|355750257|gb|EHH54595.1| hypothetical protein EGM_15466 [Macaca fascicularis]
gi|384946918|gb|AFI37064.1| dead end protein homolog 1 [Macaca mulatta]
Length = 353
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPLNLTRSALLLALQPLGPGLQEARLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 15/285 (5%)
Query: 75 TPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF 134
TPH + K + KDK + A S +++G L D +E+ L G V
Sbjct: 106 TPH-RDCSKSSRGQAHSGKDKEMSVAAKYRMAS-LYVGDLHADVTEDLLFRKFSAAGPVL 163
Query: 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET---KNRLFI 191
+R+ +D+ + S G+A+V+F A+KA+D ++ +KGK+IR S+ R I
Sbjct: 164 SIRICRDQVTRRSLGYAYVNFLQLTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGI 223
Query: 192 GNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
GNV KN + K + + G I K + ++G++FV + N + AD + ++M
Sbjct: 224 GNVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEM 283
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSA----AASQVKALYVKNIPDNTSTEKIKELFQRH 306
K + + K+ D A AS+ +Y+KN + E++K++F ++
Sbjct: 284 NGRLLK----SCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKY 339
Query: 307 GEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
G+ V VM + + FGF+ + +A KAV++ +I+G+
Sbjct: 340 GKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQ 384
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 33/206 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D G+SKG
Sbjct: 299 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSR-GKSKG 357
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 358 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQ 417
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
+L++ N+ +++ R G +I +K Q +++GF F+ + + +
Sbjct: 418 GVKLYVKNLDDTIDDEKLRNEFSSFG----SIIRVKVMQQEGQSKGFGFICF---SSLED 470
Query: 246 SRQKMLNANFKLDGNTPTISWADPKS 271
+ + M+ N + G+ P IS A +S
Sbjct: 471 ATKAMIEMNGRFLGSKP-ISIALAQS 495
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 112/259 (43%), Gaps = 37/259 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 226 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 283
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ + LK + + + KNR ++I N + ++ + V G
Sbjct: 284 NGRLLK--SCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGK 341
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-- 270
+ +++++ D + S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 342 TL-SVKVMTDSRGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVE 396
Query: 271 ----------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
Q LYVKN+ D EK++ F G + +V + +
Sbjct: 397 RQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQEGQ 456
Query: 321 KRDFGFIHYAERSSALKAV 339
+ FGFI ++ A KA+
Sbjct: 457 SKGFGFICFSSLEDATKAM 475
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 29/261 (11%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G LP D +E L +G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 10 ASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ ++G++IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKM---LNANFKLDGNTPTISWADP-KSTPD 274
++ D Q +RG+ FV + N A AD + ++M L +F+L + P K+ D
Sbjct: 129 VMCDDQG---SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRL--------FVGPFKNRRD 177
Query: 275 HSA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHY 329
A AS+ +Y+KN D EK+KE F +G++ V + SGK + FGF+ +
Sbjct: 178 REAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSF 237
Query: 330 AERSSALKAVKDTEKYEIDGK 350
+A +AV EI G+
Sbjct: 238 DTHEAAKRAVDIVNGREIFGQ 258
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 91/198 (45%), Gaps = 32/198 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ +D+ A+L + ++I + +E L++ G + V++M D SG+SKG
Sbjct: 173 KNRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF + E AK+A+D ++ +E+ G+ + ++ K
Sbjct: 232 FGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVR 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
++++ N+ + E++ RK G +I +K Q R+RGF + + + +
Sbjct: 292 GTKIYVKNLDETIDEEKLRKAFSSFG----SIIRVKVMQEEGRSRGFGLICF---SSPEE 344
Query: 246 SRQKMLNANFKLDGNTPT 263
+ + M N +L G+ P
Sbjct: 345 AARAMAEMNGRLLGSKPV 362
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+++++ L + EE LR G + V++M+ E G S+GF + F S E A +A+
Sbjct: 292 GTKIYVKNLDETIDEEKLRKAFSSFGSIIRVKVMQ--EEGRSRGFGLICFSSPEEAARAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 350 AEMNGRLLGSKPVNIALAQ 368
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ V VM P GKS + FGF+ + + A +A
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKS--KGFGFVSFEKHEDANQA 247
Query: 339 VKDTEKYEIDGK 350
V+D +I+GK
Sbjct: 248 VEDMNGKDINGK 259
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 128/279 (45%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + + M + ++G + A K
Sbjct: 219 -SVKVMTDPSG--KSKGFGFVSFEKHEDANQAVEDMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D +E L++L G V++M D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A +A+++++ K++ GK + ++ K
Sbjct: 233 FGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKK 269
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 26/260 (10%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E + AI+
Sbjct: 50 ASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIE 109
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KGK R S+ L GN+ KN D K + D V + + ++
Sbjct: 110 KLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFGNILSCKI 169
Query: 220 IKDPQNPSRNRGFSFVLYYNNACA----DYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
D +++GF FV + + A D MLN + A S D
Sbjct: 170 ATD--ETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGR--------EVYVAQHVSKKDR 219
Query: 276 SAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
+ +VKA +YVKN+ +T ++ LF ++G +T + M GK R FGFI++
Sbjct: 220 ESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFE 279
Query: 331 ERSSALKAVKDTEKYEIDGK 350
A KAV++ E G+
Sbjct: 280 NHDDAAKAVEELNDLEFKGQ 299
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D E+G+SKGF FV F A +A+D +
Sbjct: 140 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATD-ETGKSKGFGFVHFEEDNAAVEAVDAI 198
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ + + L E K +++ NV + EDEF + GP +
Sbjct: 199 NGMMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGP-I 257
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I + KD + + RGF F+ + N+ A + +++ + FK G + A K
Sbjct: 258 TSIAMEKDSE--GKFRGFGFINFENHDDAAKAVEELNDLEFK--GQKLYVGRAQKKYERL 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
++ A Q L+VKN+ D+ EK++ F G +T + + GK
Sbjct: 314 QELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
++FGF+ ++ A KA+ + + + GK P++V
Sbjct: 374 KNFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 406
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++L + N + V++ + D E++ L G + + + KD E G+ +GF
Sbjct: 216 KKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSE-GKFRGFG 274
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F++F + + A KA++EL+ E KG+ + ++ K
Sbjct: 275 FINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKK 309
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L P G + ++M+++E G+SK F FV F + E A KAI
Sbjct: 333 GVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEE-GKSKNFGFVCFSTPEEATKAI 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 392 TEKNQQIVAGKPLYVAIAQRKD 413
>gi|195117924|ref|XP_002003495.1| GI17944 [Drosophila mojavensis]
gi|193914070|gb|EDW12937.1| GI17944 [Drosophila mojavensis]
Length = 851
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 105/197 (53%), Gaps = 19/197 (9%)
Query: 72 DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG 131
DDD+ + + + + GE E D P+ ++F+G +PK E LR++ E G
Sbjct: 365 DDDSCYRLDPDTAVVTYGEKEPD---------PDNIKMFVGQVPKSMDEAQLREMFEEYG 415
Query: 132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKG--KTIRCSLSETKNR 188
V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I+ ++++NR
Sbjct: 416 PVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLSGMYHPIQMKPADSENR 475
Query: 189 ----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
LFIG + K E++ RK+ E G +E +++D QN +++G +FV + A
Sbjct: 476 NERKLFIGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAFVTFATKHAAI 532
Query: 245 YSRQKMLNANFKLDGNT 261
+ + L+ N ++G T
Sbjct: 533 SAIKVTLSQNKIMEGCT 549
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + E A+
Sbjct: 763 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPESAQM 822
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 823 AIKSMNGFQVGTKRLKVQLKKPK 845
>gi|332234666|ref|XP_003266527.1| PREDICTED: dead end protein homolog 1 [Nomascus leucogenys]
Length = 353
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>gi|426350263|ref|XP_004042699.1| PREDICTED: dead end protein homolog 1 [Gorilla gorilla gorilla]
gi|426350269|ref|XP_004042702.1| PREDICTED: dead end protein homolog 1-like [Gorilla gorilla
gorilla]
Length = 353
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG++ +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S L +GN+ KN K + D +I K
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST----PDHSAA 278
N +RGF FV + + A QK +N + N + KS + A
Sbjct: 131 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ N +++++LF + G + V VM R FGF+++ + A K
Sbjct: 187 ALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVDHMNGKEVSGQ 259
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 114/289 (39%), Gaps = 62/289 (21%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + +++ ++ S+GF FV F + E A+KAI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ + +++ N+ N E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG-NM 217
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
+++++++D SR GF FV LY A RQ
Sbjct: 218 QSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ + E++KE+F +G +T
Sbjct: 276 LKRRFE--------------QMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVIT 321
Query: 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ S + FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTESSHSKGFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + +++ L + E+ L+DL G++ V++M+D +G+S+G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL--------SETKNR------------- 188
F FV+F E A+KA+D ++ KE+ G+ + SE K R
Sbjct: 233 FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + ++ ++V G I K S ++GF FV +
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYG----VITSAKVMTESSHSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E L+++ G + ++M ES SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|34740339|ref|NP_919225.1| dead end protein homolog 1 [Homo sapiens]
gi|60389799|sp|Q8IYX4.1|DND1_HUMAN RecName: Full=Dead end protein homolog 1; AltName: Full=RNA-binding
motif, single-stranded-interacting protein 4
gi|23271359|gb|AAH33496.1| Dead end homolog 1 (zebrafish) [Homo sapiens]
gi|34327787|gb|AAQ63635.1| dead end protein [Homo sapiens]
gi|119582431|gb|EAW62027.1| dead end homolog 1 (zebrafish) [Homo sapiens]
gi|123983280|gb|ABM83381.1| dead end homolog 1 (zebrafish) [synthetic construct]
gi|123997983|gb|ABM86593.1| dead end homolog 1 (zebrafish) [synthetic construct]
gi|157928765|gb|ABW03668.1| dead end homolog 1 (zebrafish) [synthetic construct]
gi|261859334|dbj|BAI46189.1| dead end homolog 1 [synthetic construct]
Length = 353
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>gi|348582963|ref|XP_003477245.1| PREDICTED: dead end protein homolog 1-like [Cavia porcellus]
Length = 353
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPPGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P T + ++ +GPG++ +L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPLAVTHNMLLLALQPLGPGLQEAQLL 171
Query: 221 KDP-QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P Q P++ + + + ++ A +++ ++ +L G + W P
Sbjct: 172 PSPGQAPAQ---IALLKFSSHRAAAMAKKALVEGQSRLCGEQVAVEWLKP 218
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 18/255 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KAI+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KG+ R S+ L GN+ KN D K + D V + + ++
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI 157
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D +++GF FV + A ++ ++A + N I A S + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDG 349
A+KAV+ E++G
Sbjct: 272 AVKAVEALNDSELNG 286
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGP-I 245
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 246 VSASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 394
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRK 400
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ +QL + + +++ + + ++E ++L G + L KD + G+ KGF F
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGF 263
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
V++ E A KA++ L+ EL G+ + ++ KN
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN 298
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 16/259 (6%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ N +G+ FV Y + A +Q + + N L+ + PK D
Sbjct: 175 SCKVAQDEHGNSKGYGFVHYETDEAA---QQAIKHVNGMLLNEKKVYVGHHIPKK--DRQ 229
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKN+ S ++ +ELF+R+GE+T + + GK R FGF++Y
Sbjct: 230 SKFEEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTT 289
Query: 332 RSSALKAVKDTEKYEIDGK 350
SA KAV + + G+
Sbjct: 290 HESAYKAVDELNGKDFKGQ 308
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 125/316 (39%), Gaps = 76/316 (24%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A++AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAAQQAIKHV 207
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ NV ++DEFR++ E G +
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNVNPEASDDEFRELFERYGE-I 266
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D ++RGF FV Y + A + ++ +FK G + A K
Sbjct: 267 TSSSLARD--QDGKSRGFGFVNYTTHESAYKAVDELNGKDFK--GQDLYVGRAQKKHERE 322
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM------- 314
+ A+ Q LY+KN+ D+ EK++ +F G +T VM
Sbjct: 323 EELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDEKLRHMFSEFGPITSAKVMRDAPSDG 382
Query: 315 -----------PPGKSG--------------------KRDFGFIHYAERSSALKAVKDTE 343
P K G + FGF+ ++ A KAV +
Sbjct: 383 SDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDKKFGKSKGFGFVCFSNPDDATKAVAEMS 442
Query: 344 KYEIDGKSHLHFPVFV 359
+ I+GK P++V
Sbjct: 443 QRMINGK-----PLYV 453
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
DK+ G+SKGF FV F + + A KA+ E+ + + GK + +L++ K+
Sbjct: 414 DKKFGKSKGFGFVCFSNPDDATKAVAEMSQRMINGKPLYVALAQRKD 460
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 10/256 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 12 ASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 71
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GNV KN + K I D I K
Sbjct: 72 TMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKV 131
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
Q+ + ++GF FV + AD + K+ L+G + P+S + +Q
Sbjct: 132 AQDETGSSKGFGFVHFETQEAADEAMAKV--NGMMLNGKKVYVGRFVPRSERLAAMGEAQ 189
Query: 282 VKA--LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKA 338
+ +YVKN D +K+++ F+++G+V VM R FGF+ Y E SA KA
Sbjct: 190 KRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKA 249
Query: 339 VKDTEKYEIDGKSHLH 354
++ E+D ++
Sbjct: 250 CEEMNDMEVDDGRRIY 265
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 40/279 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + + D G++ ++ +D E+G SKGF FV F ++E A +A+ ++
Sbjct: 102 VFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQD-ETGSSKGFGFVHFETQEAADEAMAKV 160
Query: 169 HSKELKGKTIR-----------CSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + ++ E + R +++ N W +D+ R E G V
Sbjct: 161 NGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVV 220
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--T 272
+ D +RGF FV Y A + ++M + DG + A K+
Sbjct: 221 SAKVMTDDM---GHSRGFGFVSYEEPDSAGKACEEMNDMEVD-DGRRIYVGRAQKKAERQ 276
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ A ++K LYVKN+ E +++ F + G +T KV+ G+S
Sbjct: 277 AELKAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMTENGRS- 335
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ + P++V
Sbjct: 336 -KGFGFVCFSSPEEATKAVT-----EMNGRIVVSKPLYV 368
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L EE LR G + ++M E+G SKGF FV F S E A KA
Sbjct: 295 QGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMT--ENGRSKGFGFVCFSSPEEATKA 352
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 353 VTEMNGRIVVSKPLYVALAQRK 374
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG++ +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S L +GN+ KN K + D +I K
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST----PDHSAA 278
N +RGF FV + + A QK +N + N + KS + A
Sbjct: 131 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ N +++++LF + G + V VM R FGF+++ + A K
Sbjct: 187 ALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVDHMNGKEVSGQ 259
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 114/289 (39%), Gaps = 62/289 (21%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + +++ ++ S+GF FV F + E A+KAI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ + +++ N+ N E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG-NM 217
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
+++++++D SR GF FV LY A RQ
Sbjct: 218 QSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ + E++KE+F +G +T
Sbjct: 276 LKRRFE--------------QMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVIT 321
Query: 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ S + FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTESSHSKGFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + +++ L + E+ L+DL G++ V++M+D +G+S+G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL--------SETKNR------------- 188
F FV+F E A+KA+D ++ KE+ G+ + SE K R
Sbjct: 233 FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + ++ ++V G I K S ++GF FV +
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYG----VITSAKVMTESSHSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E L+++ G + ++M ES SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 123/250 (49%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ E++KELF ++G+ V + SGK + FGF+ + + A KAV+
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVE 249
Query: 341 DTEKYEIDGK 350
+ +I+GK
Sbjct: 250 EMNGKDINGK 259
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 32/197 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D +E L++L G V++M D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-SSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A KA++E++ K++ GK + ++ K
Sbjct: 233 FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
L+I N+ +++ RK G +++D R++GF FV + + D
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPDE 345
Query: 246 SRQKMLNANFKLDGNTP 262
+ + + N ++ G+ P
Sbjct: 346 ATKAVTEMNGRIVGSKP 362
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ D + +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTD--SSGKSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPDEATKAVT-----EMNGRIVGSKPLYV 365
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S + A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|396488840|ref|XP_003842956.1| hypothetical protein LEMA_P087160.1 [Leptosphaeria maculans JN3]
gi|312219534|emb|CBX99477.1| hypothetical protein LEMA_P087160.1 [Leptosphaeria maculans JN3]
Length = 590
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 41/250 (16%)
Query: 49 DEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSE 108
D+ + +++ S++D+ RN D + + P V ED++DK
Sbjct: 138 DDRFTRNRSPVSQRDR----RRNGADDRRLSRK-TPEPEVTEDDRDKRT----------- 181
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ + + A LR E +G V E +++KD+ +G SKG +V F+ +E KA+ EL
Sbjct: 182 IFVQQISQRAETRHLRSFFETVGPVVEAQIVKDRVTGRSKGVGYVEFKEEESVPKAL-EL 240
Query: 169 HSKELKGKTIRCSLSETK---------------------NRLFIGNVPKNWTEDEFRKVI 207
++LKG I L+E + +RL++GN+ + TE + +++
Sbjct: 241 TGQKLKGVPIIAQLTEAEKNRAARPSEGGAAPGANGAPFHRLYVGNIHFSVTEKDLQEIF 300
Query: 208 EDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267
E G +E + L +D NP R++G+ FV + + A + +M F+L G +
Sbjct: 301 EPYGE-LEQVILQRDELNPGRSKGYGFVQFVDPTHAKDALAEM--NGFELAGRQIRVGLG 357
Query: 268 DPKSTPDHSA 277
+ K TP+ +A
Sbjct: 358 NDKFTPESTA 367
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 25/181 (13%)
Query: 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
K +F+ + + R E VGP VE +++KD + R++G +V + +
Sbjct: 179 KRTIFVQQISQRAETRHLRSFFETVGPVVEA-QIVKD-RVTGRSKGVGYVEFKE----EE 232
Query: 246 SRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA-----------LYVKNIPDNT 294
S K L + P I+ ++ + +A S+ A LYV NI +
Sbjct: 233 SVPKALELTGQKLKGVPIIAQL-TEAEKNRAARPSEGGAAPGANGAPFHRLYVGNIHFSV 291
Query: 295 STEKIKELFQRHGEVTKVVMP-----PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ + ++E+F+ +GE+ +V++ PG+S + +GF+ + + + A A+ + +E+ G
Sbjct: 292 TEKDLQEIFEPYGELEQVILQRDELNPGRS--KGYGFVQFVDPTHAKDALAEMNGFELAG 349
Query: 350 K 350
+
Sbjct: 350 R 350
>gi|449668124|ref|XP_002167931.2| PREDICTED: CUGBP Elav-like family member 2-like [Hydra
magnipapillata]
Length = 511
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 11/169 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P ++FIG +P++ +E++LR + EP G++ E+ ++ DK +G+ KG AF+ F KE A +
Sbjct: 18 PEACKLFIGQVPRNWTEKELRPILEPYGEIHELSILYDKYTGQHKGCAFLVFYEKEAANR 77
Query: 164 AIDELHSKE-LKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ELH K L G ++ + SE K +LFIG + K ED+ R + G +E
Sbjct: 78 CQNELHEKRTLPGSVNKMQVKPAESEIKTEDRKLFIGMLSKKLNEDDLRIMFSPYGT-IE 136
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ ++++P S +G +F+ Y A + + M N+ + ++P +
Sbjct: 137 ELTILRNPDGGS--KGCAFIKYSTRLQAQNAIKAMHNSQTMENCSSPVV 183
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+G+ +FI LP++ ++ DL P G+V ++ DK + SK F FVS+ + A
Sbjct: 422 PDGANLFIYHLPQEFTDADLMQTFMPFGNVVSAKVFIDKPTLLSKCFGFVSYDNSLSATN 481
Query: 164 AIDELHSKELKGKTIRCSLSETKNR 188
AI+ +H + K ++ L K++
Sbjct: 482 AINAMHGFSIGSKRLKVQLKRPKDK 506
>gi|339248325|ref|XP_003375796.1| RNA-binding protein squid [Trichinella spiralis]
gi|316970795|gb|EFV54670.1| RNA-binding protein squid [Trichinella spiralis]
Length = 329
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 79/134 (58%), Gaps = 9/134 (6%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GG+ D +E DL + GDV V++ D +G S+GFAFV F + E KKA+ +
Sbjct: 59 KIFVGGISWDTNENDLTNHFNQFGDVVHVQVKYDHYTGRSRGFAFVEFATAEACKKALAK 118
Query: 168 LHSKELKGKTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ ELKGK +C + K+R LF+G +P ++TE+ RK +E G VE IE D
Sbjct: 119 KDA-ELKGK--KCEVKPAKSRENKKLFVGGLPSDYTEELLRKHMEQFGR-VEEIEWPFDK 174
Query: 224 QNPSRNRGFSFVLY 237
N R + F+F+++
Sbjct: 175 VNNKR-KNFAFIVF 187
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 122/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + KV+ D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 125/278 (44%), Gaps = 37/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D+ +G SKGF FV F S E A++AID +
Sbjct: 130 IFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAI 189
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ + + L E K ++I N+ E EF + + V P V
Sbjct: 190 NGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKVAP-V 248
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++ L KD + + RGF FV Y +A A + +++ F G + A K
Sbjct: 249 TSVHLEKDSE--GKLRGFGFVNYETHAGAAKAVEELNGVEF--HGQQLHVGRAQKKYERQ 304
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ Q L++KN+ D+ E+++E F G +T V + ++GK
Sbjct: 305 QELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTENGKS 364
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 365 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 397
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 20/261 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E ++AI+
Sbjct: 40 ASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIE 99
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KG+ R S+ L GN+ KN D K + D V + + ++
Sbjct: 100 KLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKI 159
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGN----TPTISWADPKSTPD 274
D + ++GF FV + ++ A R+ + N L+G P +S D +S +
Sbjct: 160 ATD-EVTGNSKGFGFVHFESDEAA---REAIDAINGMLLNGQEVYVAPHVSRKDRQSKLE 215
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A + +Y+KNI T ++ +E F++ VT V + GK R FGF++Y +
Sbjct: 216 E--AKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHA 273
Query: 334 SALKAVKDTEKYEIDGKSHLH 354
A KAV++ E G+ LH
Sbjct: 274 GAAKAVEELNGVEFHGQ-QLH 293
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E LR+ P G + V++M E+G+SKGF FV F + E A KAI
Sbjct: 324 GVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTT-ENGKSKGFGFVCFSTPEEATKAI 382
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 383 TEKNQQIVAGKPLYVAIAQRKD 404
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
KD+ ++L N + V+I + + E++ + + + V V L KD E G+ +GF F
Sbjct: 208 KDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSE-GKLRGFGF 266
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
V++ + A KA++EL+ E G+ + ++ K
Sbjct: 267 VNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKK 300
>gi|114602174|ref|XP_517978.2| PREDICTED: dead end protein homolog 1 [Pan troglodytes]
gi|397518071|ref|XP_003829220.1| PREDICTED: dead end protein homolog 1 [Pan paniscus]
Length = 353
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPGQ-IAVLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ V VM P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKS--KGFGFVSFEKHEEANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ +I+GK
Sbjct: 248 VEEMNGKDINGK 259
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D +E L++L G V++M D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTD-PTGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL--------SETKNR------------- 188
F FVSF E A KA++E++ K++ GK + +E K R
Sbjct: 233 FGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 130/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+++++ DP +++GF FV + + A+ + ++M + ++G + A K+
Sbjct: 219 -SVKVMTDPTG--KSKGFGFVSFEKHEEANKAVEEMNGKD--INGKMLFVGRAQKKAERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|289812790|gb|ADD18414.1| RNA-binding protein CUGBP1/BrUNO [Glossina morsitans morsitans]
Length = 706
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 108/205 (52%), Gaps = 25/205 (12%)
Query: 66 AEANRN--DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDL 123
ANRN D+D+ + + P GE E D P+ ++F+G +PK E L
Sbjct: 268 CSANRNVLDEDSCFRMDADTP---FGEKEPD---------PDNIKMFVGQVPKSMDEAQL 315
Query: 124 RDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKG--KTIRC 180
R++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I+
Sbjct: 316 REMFEEYGPVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQM 375
Query: 181 SLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL 236
++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +FV
Sbjct: 376 KPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAFVT 432
Query: 237 YYNNACADYSRQKMLNANFKLDGNT 261
+ A S K LN N ++G T
Sbjct: 433 FATKHAA-ISAIKTLNQNKTMEGCT 456
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSF 155
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF
Sbjct: 654 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTNLSKCFGFVSF 705
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 139/289 (48%), Gaps = 28/289 (9%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
E++++P A+ E ++ + N + +++G L +E L ++ PIG V +R+
Sbjct: 21 EQQQQPVAATTEQSAEEQGDSSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRV 80
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRLF 190
+D S +S G+A+V++ E +KAI+EL+ ++G+ R S+ +F
Sbjct: 81 CRDAVSKKSLGYAYVNYHKFEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIF 140
Query: 191 IGN----VPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
I N + D F + + V T EL +++ F FV Y A+ +
Sbjct: 141 IKNLHPAIDNKALHDTFSAFGKILSCKVATDEL-------GQSKCFGFVHY---ETAEAA 190
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKEL 302
+ N N L N + S D + ++KA +YVKNI + E+ ++L
Sbjct: 191 EAAIENVNGMLL-NDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKL 249
Query: 303 FQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
F +G++T + + + GK + FGF+++ E +A+KAV++ EI+G+
Sbjct: 250 FAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQ 298
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +EE+ L P G + + L KD++ G+SKGF
Sbjct: 215 KKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQD-GKSKGFG 273
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F + A KA++EL+ KE+ G+ I ++ K
Sbjct: 274 FVNFEEHDAAVKAVEELNDKEINGQKIYVGRAQKK 308
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G+SK F FV + + E A+ AI+ +
Sbjct: 139 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-ELGQSKCFGFVHYETAEAAEAAIENV 197
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ +TE+EF K+ G +
Sbjct: 198 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGK-I 256
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV + + A + +++ + +++G + A K
Sbjct: 257 TSIYLEKD--QDGKSKGFGFVNFEEHDAAVKAVEELNDK--EINGQKIYVGRAQKKRERM 312
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ A Q L+VKN+ D+ +EK++E F+ G +T + +GK
Sbjct: 313 EELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVDDAGKS 372
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ + A KA+ + + ++ K P++V
Sbjct: 373 KGFGFVCFTTPEEATKAITEMNQRMVNNK-----PLYV 405
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + +P G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 332 GVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVD-DAGKSKGFGFVCFTTPEEATKAI 390
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 391 TEMNQRMVNNKPLYVALAQRK 411
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI+GK
Sbjct: 248 VEEMNGKEINGK 259
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 131/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K ++G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEINGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 15/290 (5%)
Query: 72 DDDTPHVEEEEKPTASVGEDEKD-KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPI 130
D ++ VE P+ S E + + A ++ + +++G L +E L ++ PI
Sbjct: 24 DQESSTVESSTAPSTSATESTAEGEQASSSSVSETTASLYVGELEPSINEALLFEIFSPI 83
Query: 131 GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE---TKN 187
G V +R+ +D + S G+A+V++ + + +KAIDEL+ +KG+ IR S+ K
Sbjct: 84 GQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDELNYSVVKGQPIRIMWSQRDPAKR 143
Query: 188 RLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQ-NPSRNRGFSFVLYYNNACADY 245
R GNV KN K + D I K N +++GF FV + + A
Sbjct: 144 RNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSCKVATDNFGQSKGFGFVHFESPEAAQA 203
Query: 246 SRQK----MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKE 301
+ + +LN N G P ++ D +S + +YVKNI S E++KE
Sbjct: 204 AIENVNGMLLNNNEVYVG--PHVARRDRQSKLEE--VIKSFTNVYVKNIDLEASEEEVKE 259
Query: 302 LFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
LF G VT + GK R F F++Y E +A+K+++ + GK
Sbjct: 260 LFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGK 309
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 127/278 (45%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G + ++ D G+SKGF FV F S E A+ AI+ +
Sbjct: 150 VFIKNLHPAIDNKALHDTFSAFGRILSCKVATDN-FGQSKGFGFVHFESPEAAQAAIENV 208
Query: 169 HSKELKGKTIRCS--------------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + ++ +++ N+ +E+E +++ G V
Sbjct: 209 NGMLLNNNEVYVGPHVARRDRQSKLEEVIKSFTNVYVKNIDLEASEEEVKELFTPFGT-V 267
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+ L KD + ++RGF+FV Y + A S + + + ++K G + A KS
Sbjct: 268 TSFYLEKDAEG--KSRGFAFVNYEEHEAAVKSIESLNDQDYK--GKKLYVGRAQKKSERL 323
Query: 272 ---TPDHSAA------ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ AA SQ L+VKN+ D+ EK+KE FQ G ++ V + +SGK
Sbjct: 324 EELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESGKS 383
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A +A+ + ++ + GK P++V
Sbjct: 384 KGFGFVSFSSPEEASRAISEMNQHMLAGK-----PLYV 416
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L++ + G + V++M D ESG+SKGF FVSF S E A +AI
Sbjct: 343 GVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMID-ESGKSKGFGFVSFSSPEEASRAI 401
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ L GK + +L++ K+
Sbjct: 402 SEMNQHMLAGKPLYVALAQRKD 423
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
+D+ ++L + + + V++ + +ASEE++++L P G V L KD E G+S+GFAF
Sbjct: 227 RDRQSKLEEVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAE-GKSRGFAF 285
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
V++ E A K+I+ L+ ++ KGK + ++ K+
Sbjct: 286 VNYEEHEAAVKSIESLNDQDYKGKKLYVGRAQKKS 320
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI+GK
Sbjct: 248 VEEMNGKEINGK 259
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 131/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K ++G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEINGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 127/259 (49%), Gaps = 21/259 (8%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +++G L +D +E+ L +G V +R+ +D S S G+A+V+F + A+KA+
Sbjct: 9 AASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQKAL 68
Query: 166 DELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETI 217
D ++ ++GK+IR S+ L FI N+ K+ + G + +
Sbjct: 69 DTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGK-ILSS 127
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+++ D + RG+ FV Y + + AD + ++M N D T+ KS D A
Sbjct: 128 KVMSDEEGS---RGYGFVHYQDQSAADRAIEEM-NGKLLRD---CTVFVDRFKSRKDREA 180
Query: 278 ----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
S+ +Y+KN+ DN E +K +F ++G+ V + +GK + FGF+ +
Sbjct: 181 ELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYNH 240
Query: 333 SSALKAVKDTEKYEIDGKS 351
+A AV++ +I+G++
Sbjct: 241 EAARNAVEEMNGQDINGQT 259
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 35/248 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + P G + ++M D+E S+G+ FV ++ + A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEG--SRGYGFVHYQDQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K L+ T+ R SE N ++I N+ N ++ + + G
Sbjct: 158 NGKLLRDCTVFVDRFKSRKDREAELRSKTSEFTN-VYIKNLGDNMDDEGLKNIFSKYGQT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++KD S+ GF FV +YN+ A + ++M + ++G T + A K
Sbjct: 217 L-SVKVMKDDNGKSK--GFGFVSFYNHEAARNAVEEMNGQD--INGQTIFVGRAQKKVER 271
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
A Q LY+KN+ + E ++ F G + +V +
Sbjct: 272 QAELKEKFEQMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRVKVMQEAGQS 331
Query: 322 RDFGFIHY 329
+ FG I +
Sbjct: 332 KGFGLICF 339
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 29/172 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
KD+ A+L + + V+I L + +E L+++ G V++MKD ++G+SKGF
Sbjct: 175 RKDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKD-DNGKSKGFG 233
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------N 187
FVSF + E A+ A++E++ +++ G+TI ++ K
Sbjct: 234 FVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAA 293
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239
+L+I N+ + ++ R+ G +I +K Q +++GF + +++
Sbjct: 294 KLYIKNLDETIDDETLRREFSSFG----SICRVKVMQEAGQSKGFGLICFFS 341
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 127/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q +RG++FV + N AD + ++M A K + K+ D A
Sbjct: 129 VMSDDQG---SRGYAFVHFQNQMAADRAIEEMNGALLK----DCRLFVGRFKNRQDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A++ +Y+KN D+ ++++E+F ++G+ V + +GK + FGF+ +
Sbjct: 182 LQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHE 241
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 242 AAQKAVEEMNGKDINGQ 258
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 110/259 (42%), Gaps = 37/259 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + S+G+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQMAADRAIEEM 157
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + KNR ++I N + + +V G
Sbjct: 158 NGALLK--DCRLFVGRFKNRQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGK 215
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS- 271
V +++++ D S+ GF FV +Y++ A + ++M + ++G + A K+
Sbjct: 216 TV-SVKVMTDSTGKSK--GFGFVSFYSHEAAQKAVEEMNGKD--INGQLLFVGRAQKKAE 270
Query: 272 -----------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 271 RQAELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMKEEGR 330
Query: 321 KRDFGFIHYAERSSALKAV 339
+ FG I ++ A +A+
Sbjct: 331 SKGFGLICFSSPEEATRAM 349
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ +D+ A+L + ++I D ++ L ++ G V++M D +G+SKG
Sbjct: 173 KNRQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTD-STGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVSF S E A+KA++E++ K++ G+ + ++ K
Sbjct: 232 FGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQ 291
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R+ G +I +K + R++GF + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRREFSSFG----SISRVKVMKEEGRSKGFGLICF 339
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR G + V++MK E G SKGF + F S E A +A+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMK--EEGRSKGFGLICFSSPEEATRAM 349
Query: 166 DELHSKELKGKTIRCSLSET 185
E++ + L K + +L+++
Sbjct: 350 TEMNGRILGSKPLNIALAQS 369
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI+GK
Sbjct: 248 VEEMNGKEINGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 131/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N +++G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EINGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 17/252 (6%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER-- 332
++KA +YVKNI + S E+ +ELF++HG++T + + GK R FGF++Y +
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEA 281
Query: 333 -SSALKAVKDTE 343
S+A+ A+ DT+
Sbjct: 282 ASAAVDALNDTD 293
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ + +++EFR++ E G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG-DI 255
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+ + +D Q ++RGF FV Y + A + + + +F+ G + A K
Sbjct: 256 TSASIARDEQ--GKSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 272 ---TPDHSAAASQVKA------LYVKNIPDNTSTEKIKELFQRHGEVT 310
+ AA + ++ LY+KN+ D+ EK++++F G +T
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTIT 359
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 51/133 (38%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD------------------------ 141
G ++I L D +E LRD+ P G + ++M+D
Sbjct: 331 GVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEEAKEESEK 390
Query: 142 ---------------------------KESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
K G+SKGF FV F + + A KA+ E++ K ++
Sbjct: 391 TEESNEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIE 450
Query: 175 GKTIRCSLSETKN 187
GK + +L++ K+
Sbjct: 451 GKPLYVALAQRKD 463
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 132/277 (47%), Gaps = 38/277 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ ++ D SG+SKG+ FV + S+E A+KAI++L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSEEAAQKAIEKL 175
Query: 169 HSKELKGKTIRCS---------LSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L K + ++ K R +F+ N+ ++ E+E RK+ + G + +
Sbjct: 176 NGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFG-AITS 234
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
+ ++KD ++R F FV + N D +R +KLD + A KS
Sbjct: 235 VAVMKD--EDGKSRCFGFVNFEN--AEDAARAVEALNGYKLDNKDWFVGRAQKKSEREME 290
Query: 272 -------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKR 322
+ + SQ LY+KN+ D+ S EK+KELF +G +T KV+ P K
Sbjct: 291 LKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKG 350
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
GF+ ++ A +A+ E++GK + P++V
Sbjct: 351 S-GFVAFSNPEEASRALS-----EMNGKMVVSKPLYV 381
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L S+E L++L P G + ++M+D SG SKG FV+F + E A +A+
Sbjct: 308 GLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDP-SGVSKGSGFVAFSNPEEASRAL 366
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + K + +L++ K
Sbjct: 367 SEMNGKMVVSKPLYVALAQRK 387
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 67 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 126
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 127 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 185
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL K+ D A
Sbjct: 186 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVFV-GRFKNRKDREAE 238
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 239 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 298
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 299 AAKKAVEEMNGRDINGQ 315
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D SG+SKG
Sbjct: 230 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 288
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 289 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 348
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 349 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 396
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 157 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 214
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 215 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 273
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 274 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 328
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 329 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 388
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 389 KGFGLICFSSPEDATKAM 406
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR+ G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 349 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAM 406
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 407 TEMNGRILGSKPLSIALAQ 425
>gi|357614246|gb|EHJ68984.1| hypothetical protein KGM_20249 [Danaus plexippus]
Length = 260
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 12/138 (8%)
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
G+ + + P + +NRGF F+ Y ++ A +++++ K+ G + WADP+
Sbjct: 13 GLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEE 72
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER 332
PD S+VK LYV+N+ + E +KE F+R+G V +V +D+ F+H+ +R
Sbjct: 73 PDEQ-TMSKVKVLYVRNLTQEITEEALKEEFERYGNVERV------KKIKDYAFVHFEDR 125
Query: 333 SSALKAVKDTEKYEIDGK 350
A+KA++ EIDGK
Sbjct: 126 DCAVKAMQ-----EIDGK 138
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L ++ +EE L++ E G+V V+ +KD +AFV F ++ A KA+ E+
Sbjct: 84 LYVRNLTQEITEEALKEEFERYGNVERVKKIKD--------YAFVHFEDRDCAVKAMQEI 135
Query: 169 HSKELKGKTIRCSLSE 184
KEL G + SL++
Sbjct: 136 DGKELGGARLEVSLAK 151
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI+GK
Sbjct: 248 VEEMNGKEINGK 259
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 131/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K ++G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEINGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 127/255 (49%), Gaps = 13/255 (5%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +++G L +D +E+ L +G V +R+ +D S S G+A+V+F A+KA+
Sbjct: 9 AASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKAL 68
Query: 166 DELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIK 221
++ +KGK+IR S+ R +GNV KN + K + + TI K
Sbjct: 69 VTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSK 128
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA-- 279
+ ++G+ FV Y + AD + ++M N KL T+ A KS D A
Sbjct: 129 VMTDGEGSKGYGFVHYQDRRAADRAIEEM---NGKLL-RESTLFVARFKSRKDREAELRD 184
Query: 280 --SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
++ +Y+KN D+ EK++E+F ++G+ V + +GK + FGF+ + +A
Sbjct: 185 KPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAK 244
Query: 337 KAVKDTEKYEIDGKS 351
AV+D +I+G++
Sbjct: 245 NAVEDMNGQDINGQT 259
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 29/174 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ KD+ A+L P + V+I D +E LR++ G V++MKD +G+SKG
Sbjct: 173 KSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKD-ATGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AK A+++++ +++ G+TI ++ K
Sbjct: 232 FGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239
+L+I N+ ++ RK G +I +K Q +++GF + +++
Sbjct: 292 AAKLYIKNLDDTIDDETLRKEFSVFG----SICRVKVMQEAGQSKGFGLICFFS 341
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 33/247 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + P G + ++M D E SKG+ FV ++ + A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEG--SKGYGFVHYQDRRAADRAIEEM 157
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ K L+ T+ + +++ ++I N + +++ R+V G +
Sbjct: 158 NGKLLRESTLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTL 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++KD S+ GF FV + ++ A + + M + ++G T + A K
Sbjct: 218 -SVKVMKDATGKSK--GFGFVSFDSHEAAKNAVEDMNGQD--INGQTIFVGRAQKKVERQ 272
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
A Q LY+KN+ D E +++ F G + +V + +
Sbjct: 273 AELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQSK 332
Query: 323 DFGFIHY 329
FG I +
Sbjct: 333 GFGLICF 339
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 143/325 (44%), Gaps = 44/325 (13%)
Query: 64 QSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDL 123
Q A+A R D E + KP + ++D + + +F+ L + + L
Sbjct: 59 QVADAERALDSMNFTEIKGKP-CRIMWSQRDPSMRRSGV----GNIFVKNLHEGIDNKQL 113
Query: 124 RDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183
D G++ +++ DK +G SKG+ +V + + E A AI++L + GK ++ +
Sbjct: 114 YDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVF 173
Query: 184 ETK-NR--------LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ NR +FI N+P WTED+ R+ E G V P+ + GF F
Sbjct: 174 MRRDNRPGQADWTNVFIKNIPFEWTEDKLREEFEGFGEVVSA-----KPKEVQGSLGFGF 228
Query: 235 VLYYNNACADYSRQKMLNANFKL--DGNTPT----ISWADPKSTPDHSAAAS-------- 280
V + + A + ++M + F + DG T + A K+ + A
Sbjct: 229 VNFATHEAAAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDR 288
Query: 281 ----QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG-KRDFGFIHYAERSS 334
Q LYVKN+ D + + +++ F G +T VM K+G R FGF+ Y+
Sbjct: 289 IAKFQGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPED 348
Query: 335 ALKAVKDTEKYEIDGKSHLHFPVFV 359
A +AV E++GK L P+FV
Sbjct: 349 ATRAVN-----EMNGKIILGKPIFV 368
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 119/242 (49%), Gaps = 14/242 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L + +E L ++ +G V +R+ +D + S G+A+V++ A++A+D
Sbjct: 9 ASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAERALD 68
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
++ E+KGK R S+ + R +GN+ KN E K + D + + + ++
Sbjct: 69 SMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKV 128
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ D + ++G+ +V Y N A + +K+ +DG + + D+
Sbjct: 129 VTD-KATGLSKGYGYVHYETNEAAASAIEKL--DGMLIDGKEVQVGVFMRR---DNRPGQ 182
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+ +++KNIP + +K++E F+ GEV P G FGF+++A +A AV
Sbjct: 183 ADWTNVFIKNIPFEWTEDKLREEFEGFGEVVS-AKPKEVQGSLGFGFVNFATHEAAAAAV 241
Query: 340 KD 341
K+
Sbjct: 242 KE 243
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +++ LRD +G + R+MKD ++G S+GF FV + + E A +A+
Sbjct: 294 GVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAV 353
Query: 166 DELHSKELKGKTIRCSLSETKN 187
+E++ K + GK I +L++ ++
Sbjct: 354 NEMNGKIILGKPIFVALAQRRD 375
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L+IG++ E ++ VGP V +I + +D R+ G+++V Y+ A A+ +
Sbjct: 11 LYIGDLLPEVNEGFLFEIFNAVGP-VASIRVCRDAVT-RRSLGYAYVNYHQVADAERALD 68
Query: 249 KMLNANF-KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
M NF ++ G I W S D S S V ++VKN+ + +++ + F G
Sbjct: 69 SM---NFTEIKGKPCRIMW----SQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFG 121
Query: 308 EV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+ KVV + +G++HY +A A++ + IDGK
Sbjct: 122 NILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGK 166
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 128/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL KS D A
Sbjct: 129 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLQGCKVFV-GRFKSRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 242 AAKKAVEEMNGRDINGQ 258
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K L+G + R SE N ++I N + ++ + V G
Sbjct: 158 NGKLLQGCKVFVGRFKSRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G ++ A K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVARAQKKVER 271
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
QV LYVKN+ D EK++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ ALKA+
Sbjct: 332 KGFGLICFSSPEDALKAM 349
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KSRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF S E AKKA++E++ +++ G+ I + ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKK 268
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++++ L +E LR+ G + V++M+ E G+SKGF + F S E A KA+ E
Sbjct: 294 KLYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDALKAMTE 351
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWT 199
++ + L K + +L++ + L + + W
Sbjct: 352 MNGRILGSKPLSIALAQC-SELRLCHYTSAWV 382
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 128 TMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 186
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVFV-GRFKNRKDREAE 239
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 240 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 300 AAKKAVEEMNGRDINGQ 316
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 397
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 390 KGFGLICFSSPEDATKAM 407
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR+ G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAM 407
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 408 TEMNGRILGSKPLSIALAQ 426
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 186
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVFV-GRFKNRKDREAE 239
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 240 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 300 AAKKAVEEMNGRDINGQ 316
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 397
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 390 KGFGLICFSSPEDATKAM 407
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR+ G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAM 407
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 408 TEMNGRILGSKPLSIALAQ 426
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 15/258 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E K AI+
Sbjct: 42 ASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIE 101
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
+L+ +KG R S+ + + GN+ KN D K + D I K
Sbjct: 102 KLNYAPIKGVPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCKI 161
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ + N RGF FV + ++ A ++ ++A + N + A S D + +
Sbjct: 162 ATDEAGNSRGFGFVHFEDDEAA----KEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDE 217
Query: 282 VKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
KA +YVKNI +T E+ +E F + G +T + GK R FGF++Y + A
Sbjct: 218 AKANFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAA 277
Query: 337 KAVKDTEKYEIDGKSHLH 354
KAV++ + + G++ LH
Sbjct: 278 KAVEELNETDFKGQT-LH 294
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D E+G S+GF FV F E AK+AID +
Sbjct: 132 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATD-EAGNSRGFGFVHFEDDEAAKEAIDAI 190
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ + + L E K +++ N+ + ++EF + VGP +
Sbjct: 191 NGMLLNGQEVYVAQHVSKKDRQSKLDEAKANFTNVYVKNIHPDTGDEEFEEFFTKVGP-I 249
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD N + RGF FV Y N+ A + +++ +FK G T + A K
Sbjct: 250 TSAHLEKD--NEGKLRGFGFVNYENHNDAAKAVEELNETDFK--GQTLHVGRAQKKHERL 305
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
Q L+VKN+ D +K++E F +G +T V + ++GK
Sbjct: 306 QELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRSENGKS 365
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 366 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 398
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L ++ L + P G + V++M+ E+G+SKGF FV F + E A KAI
Sbjct: 325 GVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRS-ENGKSKGFGFVCFSTPEEATKAI 383
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 384 TEKNQQIVAGKPLYVAIAQRKD 405
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 14/258 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 60 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGE 119
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 179
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + + PK D +
Sbjct: 180 SCKVAQDENGNSKGYGFVHYETDEAAAQAI-KHVNGML-LNEKKVYVGYHIPKK--DRQS 235
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI + E+ +ELF ++GEVT + + GK R FGF++++
Sbjct: 236 KFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTH 295
Query: 333 SSALKAVKDTEKYEIDGK 350
SA KAV++ E G+
Sbjct: 296 DSAAKAVEELNGKEFRGQ 313
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 81/155 (52%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + + +EE+ R+L G+V L +D+E G+S+GF
Sbjct: 230 KKDRQSKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQE-GKSRGFG 288
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + + A KA++EL+ KE +G+ + ++ K+
Sbjct: 289 FVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGV 348
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +D+ R++ + GP + + ++++D
Sbjct: 349 NLYIKNLADDIDDDKLRQMFSEFGP-ITSAKVMRD 382
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
G+SKGF FV F + + A KA+ E++ + ++GK + +L++ K
Sbjct: 438 GKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRK 479
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPTG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PTGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI+GK
Sbjct: 248 VEEMNGKEINGK 259
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 131/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K ++G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEINGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|195351033|ref|XP_002042041.1| GM26763 [Drosophila sechellia]
gi|194123865|gb|EDW45908.1| GM26763 [Drosophila sechellia]
Length = 816
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 315 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 365
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKG--KTI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 366 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 425
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 426 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 482
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNT 261
V + A + + L+ N ++G T
Sbjct: 483 VTFATKHAAISAIKVTLSQNKIMEGCT 509
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 729 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 788
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 789 AIKAMNGFQVGTKRLKVQLKKPK 811
>gi|326426729|gb|EGD72299.1| napor protein short isoform [Salpingoeca sp. ATCC 50818]
Length = 353
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 87/155 (56%), Gaps = 11/155 (7%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G LPK EE L L +P G + ++ ++K+K +GES+G AFV+F S++ A AI +
Sbjct: 24 KLFVGQLPKSYGEEQLTALLQPYGAIHDMMILKNKMTGESRGCAFVTFCSRQSALSAIAD 83
Query: 168 LHSKE---LKGKTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K ++ +++++ R LF+G + K TE + + G +E++ +
Sbjct: 84 LHEKRTLPTMANPMQVKIADSEQRGDDRKLFVGMISKTCTEADLEAMFRPFGE-IESVNV 142
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254
+ P+ +++G +FV Y N A+ + K+ N+
Sbjct: 143 LIGPEG--QSKGCAFVKYTNAGSANQAIAKLHNST 175
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PPN S +FI LP++ ++ L G+V ++ DK +G+SK F FVS+ + + A+
Sbjct: 267 PPN-SNLFIYHLPQELNDHSLAATFMSFGNVISSKVFVDKYTGQSKCFGFVSYDNPQSAQ 325
Query: 163 KAIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ GK ++ L KN
Sbjct: 326 AAIQAMNGFQIGGKRLKVQLKRPKN 350
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|24583873|ref|NP_723737.1| arrest, isoform B [Drosophila melanogaster]
gi|442627569|ref|NP_001260403.1| arrest, isoform G [Drosophila melanogaster]
gi|22946318|gb|AAN10810.1| arrest, isoform B [Drosophila melanogaster]
gi|375065944|gb|AFA28453.1| FI19388p1 [Drosophila melanogaster]
gi|440213733|gb|AGB92938.1| arrest, isoform G [Drosophila melanogaster]
Length = 810
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 321 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 371
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--TI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 372 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHPI 431
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 432 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 488
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNT 261
V + A + + L+ N ++G T
Sbjct: 489 VTFATKHAAISAIKVTLSQNKIMEGCT 515
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 723 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 782
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 783 AIKAMNGFQVGTKRLKVQLKKPK 805
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|2231301|gb|AAB61993.1| testis-specific RNP-type RNA binding protein [Drosophila
melanogaster]
Length = 808
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 319 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 369
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--TI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 370 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 429
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 430 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 486
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNT 261
V + A + + L+ N ++G T
Sbjct: 487 VTFATKHAAISAIKVTLSQNKIMEGCT 513
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 721 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 780
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 781 AIKAMNGFQVGTKRLKVQLKKPK 803
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEITGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEITGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 14/256 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + + E +ELF++HG++T + GK R FGF++Y +
Sbjct: 222 EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEA 281
Query: 335 ALKAVKDTEKYEIDGK 350
A AV E G+
Sbjct: 282 AAVAVDHLNDIEFKGQ 297
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ ++ + N + +++ + D ++ED R+L E GD+ + +D + G+S+GF
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFG 272
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV++ E A A+D L+ E KG+ +L++G K E+E RK E
Sbjct: 273 FVNYIRHEAAAVAVDHLNDIEFKGQ-----------KLYVGRAQKKHEREEELRKQYE 319
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F + + A KA+ E++ K ++GK + +L++ K+
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKD 464
>gi|259089631|gb|ACV91671.1| AT31783p [Drosophila melanogaster]
Length = 810
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 321 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 371
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--TI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 372 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 431
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 432 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 488
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNT 261
V + A + + L+ N ++G T
Sbjct: 489 VTFATKHAAISAIKVTLSQNKIMEGCT 515
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 723 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 782
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 783 AIKAMNGFQVGTKRLKVQLKKPK 805
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 186
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVFV-GRFKNRKDREAE 239
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 240 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 300 AAKKAVEEMNGRDINGQ 316
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 330 QAELKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 390 KGFGLICFSSPEDATKAM 407
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQ 349
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 397
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR+ G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAM 407
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 408 TEMNGRILGSKPLSIALAQ 426
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP S+ GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|194861289|ref|XP_001969750.1| GG23776 [Drosophila erecta]
gi|190661617|gb|EDV58809.1| GG23776 [Drosophila erecta]
Length = 837
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 336 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 386
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--TI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 387 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 446
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 447 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 503
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNT 261
V + A + + L+ N ++G T
Sbjct: 504 VTFATKHAAISAIKVTLSQNKIMEGCT 530
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 750 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 809
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 810 AIKAMNGFQVGTKRLKVQLKKPK 832
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 17/252 (6%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER-- 332
++KA +YVKNI + S E+ +ELF++HG++T + + GK R FGF++Y +
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEA 281
Query: 333 -SSALKAVKDTE 343
S+A+ A+ DT+
Sbjct: 282 ASAAVDALNDTD 293
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ + +++EFR++ E G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG-DI 255
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+ + +D Q ++RGF FV Y + A + + + +F+ G + A K
Sbjct: 256 TSASIARDEQ--GKSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 272 ---TPDHSAAASQVKA------LYVKNIPDNTSTEKIKELFQRHGEVT 310
+ AA + ++ LY+KN+ D+ EK++++F G +T
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTIT 359
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 51/133 (38%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD------------------------ 141
G ++I L D +E LRD+ P G + ++M+D
Sbjct: 331 GVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEESKEEAEK 390
Query: 142 ---------------------------KESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
K G+SKGF FV F + + A KA+ E++ K ++
Sbjct: 391 TEESKEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIE 450
Query: 175 GKTIRCSLSETKN 187
GK + +L++ K+
Sbjct: 451 GKPLYVALAQRKD 463
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEITGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEITGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEITGK 259
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEITGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 128/253 (50%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK+IR S+ R IGNV KN + K + + G I K
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKV 129
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA----A 278
+ ++G++FV + N + AD + ++M N KL + + K+ D A
Sbjct: 130 MSDDQGSKGYAFVHFQNQSAADRAIEEM---NGKLL-KSCKVFVGRFKNRKDREAELRSK 185
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ + +A K
Sbjct: 186 ASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKK 245
Query: 338 AVKDTEKYEIDGK 350
AV++ +I+G+
Sbjct: 246 AVEEMNGRDINGQ 258
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L++ N+ +++ R G +I +K Q +++GF F+ +
Sbjct: 292 GVKLYVKNLDDTIDDEKLRNEFSSFG----SIIRVKVMQQEGQSKGFGFICF 339
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 37/259 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ K LK + + + KNR ++I N + ++ + V G
Sbjct: 158 NGKLLK--SCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGK 215
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 216 TL-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVE 270
Query: 271 STPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ Q+K LYVKN+ D EK++ F G + +V + +
Sbjct: 271 RQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQEGQ 330
Query: 321 KRDFGFIHYAERSSALKAV 339
+ FGFI ++ A KA+
Sbjct: 331 SKGFGFICFSSLEDATKAM 349
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++++ L +E LR+ G + V++M+ + G+SKGF F+ F S E A KA+
Sbjct: 292 GVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFSSLEDATKAM 349
Query: 166 DELHSKELKGKTIRCSLSET 185
E++ L K I +L+++
Sbjct: 350 IEMNGCFLGSKPISIALAQS 369
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 186
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVFV-GRFKNRKDREAE 239
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 240 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 300 AAKKAVEEMNGRDINGQ 316
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 397
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 390 KGFGLICFSSPEDATKAM 407
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR+ G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAM 407
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 408 TEMNGRILGSKPLSIALAQ 426
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|195578717|ref|XP_002079210.1| GD23828 [Drosophila simulans]
gi|194191219|gb|EDX04795.1| GD23828 [Drosophila simulans]
Length = 821
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 320 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 370
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--TI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 371 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 430
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 431 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 487
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
V + A + + L+ N ++G T + +AD
Sbjct: 488 VTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFAD 523
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 734 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 793
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 794 AIKAMNGFQVGTKRLKVQLKKPK 816
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 123/260 (47%), Gaps = 13/260 (5%)
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
+A + +++G L D +E+ L +G V +R+ +D + S G+A+V+F
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 160 FAKKAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVE 215
A+KA+D ++ +KGK+IR S+ L IGNV KN K + +
Sbjct: 63 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFG 122
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
I K + +RG++FV + N AD + ++M A K + KS D
Sbjct: 123 KILSSKVMSDDHGSRGYAFVHFQNQIAADRAIEEMNGALLK----DCRLFVGRFKSRKDR 178
Query: 276 SA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
A A + +Y+KN D E++ E+F ++G+ V + SGK + FGF+ +
Sbjct: 179 EAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+A +AV++ +I+G+
Sbjct: 239 SHEAAKRAVEEMNGKDINGQ 258
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 90/197 (45%), Gaps = 32/197 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ KD+ A+ + V+I + +E L ++ G V++M D SG+SKG
Sbjct: 173 KSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AK+A++E++ K++ G+ + ++ K
Sbjct: 232 FGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
+L+I N+ + +++ R+ G +I +K Q R++GF + + + A+
Sbjct: 292 GAKLYIKNLDETIDDEKLRREFSSFG----SISRVKVMQEEGRSKGFGLICF---SSAEE 344
Query: 246 SRQKMLNANFKLDGNTP 262
+ + M N ++ G+ P
Sbjct: 345 ATKAMTEMNGRILGSKP 361
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 111/259 (42%), Gaps = 37/259 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L + G + ++M D S+G+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG--SRGYAFVHFQNQIAADRAIEEM 157
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + K+R ++I N ++ +V G
Sbjct: 158 NGALLK--DCRLFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGK 215
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS- 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K+
Sbjct: 216 TL-SVKVMTDSSGKSK--GFGFVSFDSHEAAKRAVEEMNGKD--INGQLLFVGRAQKKAE 270
Query: 272 -TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ Q+K LY+KN+ + EK++ F G +++V + +
Sbjct: 271 RQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGR 330
Query: 321 KRDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 331 SKGFGLICFSSAEEATKAM 349
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G++++I L + +E LR G + V++M+ E G SKGF + F S E A KA+
Sbjct: 292 GAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ--EEGRSKGFGLICFSSAEEATKAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 350 TEMNGRILGSKPLNIALAQ 368
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 123/254 (48%), Gaps = 11/254 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L +E L + IG V +R+ +D + S G+A+V+F+S A AID
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAID 91
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+ + + GK IR S+ R +GN+ KN + K + D TI K
Sbjct: 92 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKV 151
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA-S 280
+ + N +G+ FV + A+ ++ + N N ++ N + + D S +
Sbjct: 152 AMDSAGNSKGYGFVQFET---AEAAQAAIDNVN-GMELNDKQVYVGPFQRRADRSTQGEA 207
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
+ +YVKN+ +N S EK++E F HG VT V+ + GK + FGF+ + A AV
Sbjct: 208 KFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAV 267
Query: 340 KDTEKYEIDGKSHL 353
++ + Y D K+ +
Sbjct: 268 ENLDGYTEDEKTWV 281
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 124/281 (44%), Gaps = 47/281 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D +G SKG+ FV F + E A+ AID +
Sbjct: 122 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMD-SAGNSKGYGFVQFETAEAAQAAIDNV 180
Query: 169 HSKELKGKTI----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+ EL K + R + E K N +++ N+ +N ++++ R+ + G V +
Sbjct: 181 NGMELNDKQVYVGPFQRRADRSTQGEAKFNNVYVKNLSENLSDEKLREKFAEHG-AVTSC 239
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP-TISWADPKSTPDHS 276
++KD + S+ GF FV + S + +A LDG T +W ++
Sbjct: 240 VIMKDEEGKSK--GFGFVCFE-------SPEGAASAVENLDGYTEDEKTWVVCRAQKKAE 290
Query: 277 AAASQVKA-----------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGK 318
A ++KA LY+KN+ + T EK++ELF G +T VM
Sbjct: 291 REA-ELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDAS 349
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R F+ ++ A +AV E++GK P++V
Sbjct: 350 GASRGSAFVAFSSPDEATRAVT-----EMNGKMVGAKPLYV 385
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ ++I L + +E LR+L G + R+M+D SG S+G AFV+F S + A +A+
Sbjct: 312 GANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDA-SGASRGSAFVAFSSPDEATRAV 370
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + K + +L++ K
Sbjct: 371 TEMNGKMVGAKPLYVALAQRK 391
>gi|426231613|ref|XP_004009833.1| PREDICTED: RNA-binding protein 47 [Ovis aries]
Length = 546
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 54/246 (21%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVG---------------------------------- 95
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L G + C + RLFIG +PK +E + I V GV + + +
Sbjct: 96 -------LLG--VGCGVDTC--RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD 144
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK L
Sbjct: 145 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKIL 203
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 204 YVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNLN 257
Query: 344 KYEIDG 349
E++G
Sbjct: 258 GTELEG 263
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 126/262 (48%), Gaps = 22/262 (8%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 51 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 110
Query: 163 KAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
KA++EL+ +KG+ R S+ + +FI N+ G +
Sbjct: 111 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 169
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTP 273
+ ++ +D S +G+ FV Y + A +Q + + N L+ + PK
Sbjct: 170 LSCKVAQDENGSS--KGYGFVHYETDEAA---QQAIKHVNGMLLNEKKVYVGHHIPKK-- 222
Query: 274 DHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIH 328
D + ++KA +YVKNI + ++ +ELF+RHG+VT + + GK R FGF++
Sbjct: 223 DRQSKFEEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVN 282
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
+ +A KAV++ ++ G+
Sbjct: 283 FTTHEAAAKAVEELNNKDLHGQ 304
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 101/228 (44%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A++AI +
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGSSKGYGFVHYETDEAAQQAIKHV 203
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+ T+DEFR++ E G V
Sbjct: 204 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEVTDDEFRELFERHG-DV 262
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ + ++ ++RGF FV + + A + +++ N + L G + A K
Sbjct: 263 TSSSIARE--QDGKSRGFGFVNFTTHEAAAKAVEELNNKD--LHGQELYVGRAQKKHERE 318
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A+ Q LY+KN+ D+ +K++ +F G +T
Sbjct: 319 EELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDDKLRIMFAEFGPIT 366
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 14/258 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ S + +
Sbjct: 60 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGE 119
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 179
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + + PK D +
Sbjct: 180 SCKVAQDENGNSKGYGFVHYETDEAAAQAI-KHVNGML-LNEKKVYVGYHIPKK--DRQS 235
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI + E+ +ELF ++GEVT + GK R FGF+++
Sbjct: 236 KFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTH 295
Query: 333 SSALKAVKDTEKYEIDGK 350
+SA KAV++ E G+
Sbjct: 296 ASAAKAVEELNGKEFRGQ 313
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 126/321 (39%), Gaps = 81/321 (25%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + K +++ N+ TE+EFR++ G V
Sbjct: 213 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGE-V 271
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D N ++RGF FV + +A A + +++ F+ G + A K
Sbjct: 272 TSSSLARD--NEGKSRGFGFVNFTTHASAAKAVEELNGKEFR--GQELYVGRAQKKHERE 327
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM------P 315
+ A Q LY+KN+ D+ +K++++F G +T VM P
Sbjct: 328 EELRKSYEAARLEKANKYQGVNLYIKNLADDVDDDKLRQMFSEFGPITSAKVMRDAPPEP 387
Query: 316 PGKS------------------------------------GK-RDFGFIHYAERSSALKA 338
P S GK + FGF+ ++ A KA
Sbjct: 388 PAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKKVERKLGKSKGFGFVCFSNPDDATKA 447
Query: 339 VKDTEKYEIDGKSHLHFPVFV 359
V + + +DGK P++V
Sbjct: 448 VAEMNQRMVDGK-----PLYV 463
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
+++ G+SKGF FV F + + A KA+ E++ + + GK + +L++ K
Sbjct: 424 ERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRK 469
>gi|195472345|ref|XP_002088461.1| GE18580 [Drosophila yakuba]
gi|194174562|gb|EDW88173.1| GE18580 [Drosophila yakuba]
Length = 830
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 329 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 379
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--TI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 380 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 439
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 440 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 496
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
V + A + + L+ N ++G T + +AD
Sbjct: 497 VTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFAD 532
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 743 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 802
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 803 AIKAMNGFQVGTKRLKVQLKKPK 825
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+ + GP +
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQDLFIQFGP-I 134
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y N+ A + + + ++ L+G + A K+
Sbjct: 135 VSASLEKDAD--GKLKGFGFVNYENHEDAVKAVEALNESD--LNGEKLYVGRAQKKNERM 190
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 191 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKS 250
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 251 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 283
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 210 GVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 268
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 269 TEKNQQIVAGKPLYVAIAQRK 289
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 14/254 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L +E L +L IG V +R+ +D + S G+A+V+F + E +KA+D
Sbjct: 69 ASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 128
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +KG+ R S+ + ++ GNV KN K + D I K
Sbjct: 129 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 188
Query: 223 PQNPSRN-RGFSFVLY----YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+ N +G+ FV + NA ++ +LN G+ IS D +S A
Sbjct: 189 AVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGH--HISRRDRQS--KFEA 244
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
+ +YVKN+ +T+ E+ +LF+++G++T + + +GK R F F+++A SA
Sbjct: 245 LKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQ 304
Query: 337 KAVKDTEKYEIDGK 350
+AV + +E GK
Sbjct: 305 QAVDELNDFEYKGK 318
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 119/279 (42%), Gaps = 40/279 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G + ++ D E G SKG+ FV F S + A AI+ +
Sbjct: 159 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNSKGYGFVHFDSVDSANAAIEHV 217
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + +L +++ N+ + TE+EF K+ E G +
Sbjct: 218 NGMLLNDKKVYVGHHISRRDRQSKFEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGK-I 276
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPK--S 271
++ L KD N + RGF+FV N A D ++Q + N F+ G + A K
Sbjct: 277 TSLSLAKD--NAGKFRGFAFV---NFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHER 331
Query: 272 TPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K L+VKN+ D E++K F G +T VM +
Sbjct: 332 QEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNK 391
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ Y+ A KA+ + + + GK P++V
Sbjct: 392 SKGFGFVCYSNPEEATKAIAEMNQRMLAGK-----PLYV 425
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 28/171 (16%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
+D+ ++ AL N + V++ L D +EE+ L E G + + L KD +G+ +GFAF
Sbjct: 236 RDRQSKFEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDN-AGKFRGFAF 294
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------R 188
V+F + + A++A+DEL+ E KGK + ++ K+
Sbjct: 295 VNFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVN 354
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239
LF+ N+ ++ + G + + +++ D N +++GF FV Y N
Sbjct: 355 LFVKNLQDEIDDERLKSEFSAFGT-ITSAKVMTDENN--KSKGFGFVCYSN 402
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L + +E L+ G + ++M D E+ +SKGF FV + + E A KAI
Sbjct: 352 GVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTD-ENNKSKGFGFVCYSNPEEATKAI 410
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + L GK + +L++ K
Sbjct: 411 AEMNQRMLAGKPLYVALAQRK 431
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 21/253 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L A+E L +L IG V +R+ +D + S G+A+V+F + A +AID
Sbjct: 43 TSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAID 102
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + + GK IR S+ +FI N+ K+ R G + + +
Sbjct: 103 VLNFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFG-NIVSAK 161
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ D Q S +G+ F+ + A A + +K+ ++ N + + +
Sbjct: 162 VATDGQGNS--KGYGFIQFDTEAAAKEAIEKVNG----MELNDKVVYVGPFQRRAERGTT 215
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
++ ++VKN+ D + E+++++F+ G VT V++ + GK + FGF+ Y A K
Sbjct: 216 ETKFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASK 275
Query: 338 AVKDTEKYEIDGK 350
AV+ E+DGK
Sbjct: 276 AVE-----ELDGK 283
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ ++I L A +E LR+L + G + R+M+D SG S+G AFV+F S E A +A+
Sbjct: 323 GANLYIKNLEDGADDETLRELFKEFGTITSCRVMRDA-SGVSRGSAFVAFSSPEEATRAV 381
Query: 166 DELHSKELKGKTIRCSLSETK 186
EL+ K + K + +L++ K
Sbjct: 382 TELNGKMVGAKPLYVALAQRK 402
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|195435047|ref|XP_002065513.1| GK15493 [Drosophila willistoni]
gi|194161598|gb|EDW76499.1| GK15493 [Drosophila willistoni]
Length = 866
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 108/208 (51%), Gaps = 25/208 (12%)
Query: 66 AEANRN-----DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
ANRN DDD+ + T + GE E D P+ ++F+G +PK E
Sbjct: 343 CSANRNMVVGMDDDS-CFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDE 392
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--T 177
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G
Sbjct: 393 TQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHP 452
Query: 178 IRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFS 233
I+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +
Sbjct: 453 IQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCA 509
Query: 234 FVLYYNNACADYSRQKMLNANFKLDGNT 261
FV + A + + L+ N ++G T
Sbjct: 510 FVTFATKHAAISAIKVTLSQNKIMEGCT 537
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 778 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 837
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 838 AIKAMNGFQVGTKRLKVQLKKPK 860
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 127/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 186
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVFV-GRFKNRKDREAE 239
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 240 LRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 300 AAKKAVEEMNGRDINGQ 316
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 110/258 (42%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGEMDDERLKDVFSKYGKT 274
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 390 KGFGLICFSSPEDATKAM 407
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I + +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 397
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR+ G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAM 407
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 408 TEMNGRILGSKPLSIALAQ 426
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEITGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEITGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL + K+ D A
Sbjct: 129 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCK-VFVGRFKNRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 242 AAKKAVEEMNGRDINGQ 258
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 332 KGFGLICFSSPEDATKAM 349
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR+ G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 350 TEMNGRILGSKPLSIALAQ 368
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|113205592|ref|NP_001037899.1| dead end homolog 1 [Xenopus (Silurana) tropicalis]
gi|89269952|emb|CAJ81779.1| dead end homolog 1 (zebrafish) [Xenopus (Silurana) tropicalis]
Length = 373
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +GSEVFIG +P+D E+ L L + IG ++E RLM SG ++GFA+ + + A
Sbjct: 77 PVSGSEVFIGKIPQDIYEDKLIPLFQSIGKLYEFRLMMT-FSGLNRGFAYARYIGRRQAV 135
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L+ E+ KG I S K+ L + +P + + + ++E+V GV + L +
Sbjct: 136 SAIMTLNGYEITKGCCIVVCRSTEKSELALDGLPSHLEQPALKNILEEVTSGVSALSLYQ 195
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
P N S+ + V Y ++ A +++ + + L G T+SW
Sbjct: 196 SPSNESQV--LAIVKYDSHRAAAMAKKSLCEGSQFLRGLPLTVSW 238
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|443723647|gb|ELU11974.1| hypothetical protein CAPTEDRAFT_144233 [Capitella teleta]
Length = 461
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 88/155 (56%), Gaps = 11/155 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +P+ E DLR + E G VF++ +++DK +G+SKG FV+F +++ A +
Sbjct: 13 PDAIKMFVGQIPRSMDESDLRKMFEEFGPVFQLNVLRDKVTGQSKGCCFVTFYTRKSALE 72
Query: 164 AIDELHS-KELKG-------KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A ++LH+ K + G K C + +LF+G + K E+E R + G +E
Sbjct: 73 AQNQLHNIKTMAGMQHPIQMKPADCEKRNEERKLFVGMLSKKCNENEVRMMFAPFGT-IE 131
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
++++ QN ++RG +FV Y + CA + + M
Sbjct: 132 ECTVLRE-QN-GQSRGCAFVTYASKQCAQNAIKGM 164
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+G+ +FI LP++ +++DL + P G V ++ DK++ SK F FVS+ + A+
Sbjct: 373 PDGANLFIYHLPQEFADQDLMQMFLPFGTVISAKVFIDKQTNLSKCFGFVSYDNPMSAQA 432
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 433 AIQAMNGFQIGMKRLKVQLKRPKS 456
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K +E ++R + P G + E ++++ ++G+S+G AFV++ SK+ A+ AI
Sbjct: 105 KLFVGMLSKKCNENEVRMMFAPFGTIEECTVLRE-QNGQSRGCAFVTYASKQCAQNAIKG 163
Query: 168 L-HSKELKG 175
+ HS+ ++G
Sbjct: 164 MHHSQTMEG 172
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 126/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 109 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALD 168
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK IR S+ L FI N+ ++ + G + + +
Sbjct: 169 TMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK-ILSSK 227
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q +RG++FV + N AD + ++M A K + K+ D A
Sbjct: 228 VMSDDQG---SRGYAFVHFQNQIAADRAIEEMNGALLK----DCRLFVGRFKNRKDREAE 280
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A++ +Y+KN D+ E++KE+F ++G+ V + SGK + FGF+ +
Sbjct: 281 LRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 340
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 341 AAKKAVEEMNGKDINGQ 357
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + V+I D +E L+++ G V++M D SG+SKG
Sbjct: 272 KNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SSGKSKG 330
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
F FVSF S E AKKA++E++ K++ G+ + ++ K+
Sbjct: 331 FGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKS 368
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 124/281 (44%), Gaps = 46/281 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L + G + ++M D + S+G+AFV F+++ A +AI+E+
Sbjct: 199 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEM 256
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + KNR ++I N + ++ ++V G
Sbjct: 257 NGALLK--DCRLFVGRFKNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGK 314
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
+ +++++ D + +++GF FV + ++ A + ++M + ++G + A KS
Sbjct: 315 TL-SVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEMNGKD--INGQLLFVGRAQKKS- 368
Query: 273 PDHSAAASQV--------------KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK 318
+ A QV LY+KN+ D EK+ F G +++V + +
Sbjct: 369 -ERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREE 427
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FG I ++ A KA+ E++G+ P+++
Sbjct: 428 GRSKGFGLICFSSPEEATKAMA-----EMNGRILGSKPLYI 463
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E L G + V++M+ E G SKGF + F S E A KA+
Sbjct: 391 GMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMR--EEGRSKGFGLICFSSPEEATKAM 448
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 449 AEMNGRILGSKPLYIALAQ 467
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|330920965|ref|XP_003299224.1| hypothetical protein PTT_10174 [Pyrenophora teres f. teres 0-1]
gi|311327182|gb|EFQ92678.1| hypothetical protein PTT_10174 [Pyrenophora teres f. teres 0-1]
Length = 570
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 36/211 (17%)
Query: 88 VGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGES 147
V ED++DK +F+ + + A LR E +G V E +++KD+ + S
Sbjct: 169 VTEDDRDKRT-----------IFVQQISQRAETHHLRTFFERVGPVIEAQIVKDRVTLRS 217
Query: 148 KGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK--------------------- 186
KG +V F+ +E KA+ EL ++LKG I L+E +
Sbjct: 218 KGVGYVEFKDEESVAKAL-ELTGQKLKGVPIIAQLAEAEKNRAARPSEGGAAPGANGAPF 276
Query: 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
+RL++GN+ + TE + R + E G +E + L +D NP R++G+ FV + + A A +
Sbjct: 277 HRLYVGNIHFSVTEGDLRDIFEPFG-ALEQVILQRDEANPGRSKGYGFVQFVDPAHAKNA 335
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+M F+L G + + K TP+ +A
Sbjct: 336 LAEM--NGFELAGRQIRVGLGNDKFTPESTA 364
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL + K+ D A
Sbjct: 129 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCK-VFVGRFKNRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 242 AAKKAVEEMNGRDINGQ 258
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 332 KGFGLICFSSPEDATKAM 349
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR+ G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 350 TEMNGRILGSKPLSIALAQ 368
>gi|442627571|ref|NP_001260404.1| arrest, isoform H [Drosophila melanogaster]
gi|442627573|ref|NP_001260405.1| arrest, isoform I [Drosophila melanogaster]
gi|442627575|ref|NP_001260406.1| arrest, isoform J [Drosophila melanogaster]
gi|442627577|ref|NP_001260407.1| arrest, isoform K [Drosophila melanogaster]
gi|440213734|gb|AGB92939.1| arrest, isoform H [Drosophila melanogaster]
gi|440213735|gb|AGB92940.1| arrest, isoform I [Drosophila melanogaster]
gi|440213736|gb|AGB92941.1| arrest, isoform J [Drosophila melanogaster]
gi|440213737|gb|AGB92942.1| arrest, isoform K [Drosophila melanogaster]
Length = 573
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 84 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 134
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--TI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 135 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHPI 194
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 195 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 251
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNT 261
V + A + + L+ N ++G T
Sbjct: 252 VTFATKHAAISAIKVTLSQNKIMEGCT 278
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 486 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 545
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 546 AIKAMNGFQVGTKRLKVQLKKPK 568
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ ++KELF ++G+ V VM P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKS--KGFGFVSFEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ +I+GK
Sbjct: 248 VEEMNGKDINGK 259
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 32/197 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D + L++L G V++M D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A KA++E++ K++ GK + ++ K
Sbjct: 233 FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
L+I N+ +++ RK G +++D R++GF FV + + D
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPDE 345
Query: 246 SRQKMLNANFKLDGNTP 262
+ + + N ++ G+ P
Sbjct: 346 ATKAVTEMNGRIVGSKP 362
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 128/279 (45%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTDPSG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPDEATKAVT-----EMNGRIVGSKPLYV 365
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S + A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|218187131|gb|EEC69558.1| hypothetical protein OsI_38856 [Oryza sativa Indica Group]
Length = 560
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 71/111 (63%), Gaps = 10/111 (9%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE---FAK 162
G+EVF+GGLP+ +E LR++ P G++ ++R+MKD ++G SKG+ FV F +E AK
Sbjct: 407 GAEVFVGGLPRSVTERALREVFSPCGEIVDLRIMKD-QNGISKGYGFVRFAERECAYIAK 465
Query: 163 KAIDELHSK------ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVI 207
+ I+ ++ +L+GK + LS ++ LF GN+ K+W +EF ++I
Sbjct: 466 RQINGFEARISNFLFDLQGKRLAVDLSLDQDTLFFGNLCKDWGIEEFEELI 516
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 25/259 (9%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L + +E L D+ P+G + +R+ +D + S G+A+V++ E KKA
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
I EL+ E+ G+ R SE +FI N+ + G V +
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGE-VLS 166
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
++ D SR GF FV + + A + + + ++G ++ PK D
Sbjct: 167 CKVALDENGNSR--GFGFVHFKEESDAKDAIEAV--NGMLMNGLEVYVAMHVPKK--DRI 220
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ + KA +YVKNI T+ E+ ++LF ++GE+ + GK + FGF+++ +
Sbjct: 221 SKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVD 280
Query: 332 RSSALKAVKDTEKYEIDGK 350
++A KAV+ E++GK
Sbjct: 281 HNAAAKAVE-----ELNGK 294
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L + G+V ++ D E+G S+GF FV F+ + AK AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + G + ++ K +++ N+ T++EF ++ G +
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGE-I 257
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + +GF FV + ++ A + +++ FK + A K
Sbjct: 258 VSAALEKDAE--GKPKGFGFVNFVDHNAAAKAVEELNGKEFK--SQALYVGRAQKKYERA 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A Q L++KN+ D+ EK+KE F +G +T VM +
Sbjct: 314 EELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 374 KGFGFVCFSSPEEATKAMTEKNQQIVAGK-----PLYV 406
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L++ P G + R+M+D+E G SKGF FV F S E A KA+
Sbjct: 333 GVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAM 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 392 TEKNQQIVAGKPLYVAIAQRKD 413
>gi|327270493|ref|XP_003220024.1| PREDICTED: dead end protein homolog 1-like [Anolis carolinensis]
Length = 339
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 4/167 (2%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+G+EVFIG +P+D E+ L L + +G+++E RLM SG ++GFA+ + ++ A+K
Sbjct: 47 PSGTEVFIGKIPQDIYEDKLIPLFQSVGELYEFRLMMT-FSGLNRGFAYAMYIDRDGAQK 105
Query: 164 AIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
AI L+ E+ KG I S S K L I + + ED+ +++++ GV +I +
Sbjct: 106 AIRLLNKYEIQKGHQILVSRSTNKCELCIDGLAPSVKEDQLLPMLQELTTGVISITI--H 163
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P + R + V Y ++ A +++ ++ L G+ + W P
Sbjct: 164 PSPFKKQRQLAVVKYISHQAAAIAKKALVEGTLCLCGDQIEVDWLTP 210
>gi|224060419|ref|XP_002300190.1| predicted protein [Populus trichocarpa]
gi|222847448|gb|EEE84995.1| predicted protein [Populus trichocarpa]
Length = 689
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 8/209 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+GGL K A EEDLR + + +V +VRL D ES K AF++F + E A++AI E
Sbjct: 72 KVFVGGLDKYAKEEDLRKVFGGVEEVTKVRLSWDSES--KKRVAFLTFATVELARRAICE 129
Query: 168 LHSKELKGKTIRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDP 223
+ + GK RC ++ ++ L++ N+ K WT+D+ + + G E + L
Sbjct: 130 ISDPVINGK--RCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEYGVKNYEILTLNPAR 187
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+N +NRG++ + + + A + + + N N + K + S VK
Sbjct: 188 ENKEKNRGYAHLDFRSGKDASEALELLKKENVSFGQNRAAKADFSRKYASGNDEIMSHVK 247
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKV 312
+Y+ IP E +K+ + G + KV
Sbjct: 248 RVYLDGIPRAWREEHVKKHLKEFGRIVKV 276
>gi|302786984|ref|XP_002975262.1| hypothetical protein SELMODRAFT_442777 [Selaginella moellendorffii]
gi|300156836|gb|EFJ23463.1| hypothetical protein SELMODRAFT_442777 [Selaginella moellendorffii]
Length = 427
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +PK ++E+L + E G VF++ ++KDK + +S+G F+++ S+ A
Sbjct: 8 PDAVKLFVGQIPKHLTQEELLPIFEEAGAVFDINIIKDKSTKQSRGCCFLTYSSRSEADN 67
Query: 164 AIDELHSKE--------LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
AID H+K+ ++ K L +++LFIG +PK+ TE E R V + G ++
Sbjct: 68 AIDLFHNKKTISPMNSPMQVKYADGELERLEHKLFIGMLPKSVTEAEVRDVFSEYG-NIK 126
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
+++IK Q ++ F L Y + LN ++++G + + WAD
Sbjct: 127 ELQVIKGSQQTAKACAF---LKYETREEAAGAVEALNGIYRMEGASSALVVKWAD 178
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI +P + + +L G+V ++ DK +G SK F FVS+ S E A+
Sbjct: 339 PPGANLFIYHIPAEFGDSELSTAFASFGNVISAKVFVDKTTGISKCFGFVSYDSPEAAQS 398
Query: 164 AIDELHSKELKGKTIRCSL 182
AI+ ++ +L GK ++ L
Sbjct: 399 AINVMNGFQLSGKRLKVQL 417
>gi|24583877|ref|NP_723739.1| arrest, isoform A [Drosophila melanogaster]
gi|281364913|ref|NP_001162963.1| arrest, isoform E [Drosophila melanogaster]
gi|15291827|gb|AAK93182.1| LD29068p [Drosophila melanogaster]
gi|22946320|gb|AAN10812.1| arrest, isoform A [Drosophila melanogaster]
gi|220945910|gb|ACL85498.1| aret-PA [synthetic construct]
gi|220955600|gb|ACL90343.1| aret-PA [synthetic construct]
gi|272407017|gb|ACZ94249.1| arrest, isoform E [Drosophila melanogaster]
Length = 604
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 115 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 165
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--TI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 166 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHPI 225
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 226 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 282
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNT 261
V + A + + L+ N ++G T
Sbjct: 283 VTFATKHAAISAIKVTLSQNKIMEGCT 309
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 517 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 576
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 577 AIKAMNGFQVGTKRLKVQLKKPK 599
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 124/258 (48%), Gaps = 14/258 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN + +++G L +E L +L IG V +R+ +D + S G+A+V++ S ++
Sbjct: 53 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 112
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 113 ALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILS 172
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A S K +N L+ + PK D +
Sbjct: 173 CKVAQDEHGNSKGYGFV-HYETAEAANSAIKSVNGML-LNEKKVFVGHHIPKK--DRMSK 228
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI + ++ + LF+++G++T + + GK R FGF++Y
Sbjct: 229 FEEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHE 288
Query: 334 SALKAVKDTEKYEIDGKS 351
A KAV++ + G++
Sbjct: 289 DANKAVEELNNSDFKGQA 306
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 146 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETAEAANSAIKSV 204
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ T+DEFR + E G +
Sbjct: 205 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGD-I 263
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L D + ++RGF FV Y + A+ + +++ N++FK G + A K
Sbjct: 264 TSASLAHDQE--GKSRGFGFVNYIRHEDANKAVEELNNSDFK--GQALYVGRAQKKHERE 319
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ +A Q LYVKN+ D ++++++F+ +G +T
Sbjct: 320 EELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELRKIFEPYGAIT 367
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 78/155 (50%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +A++++ R L E GD+ L D+E G+S+GF
Sbjct: 222 KKDRMSKFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQE-GKSRGFG 280
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV++ E A KA++EL++ + KG+ + ++ K+
Sbjct: 281 FVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGV 340
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L++ N+ +DE RK+ E G + + ++++D
Sbjct: 341 NLYVKNLADEIDDDELRKIFEPYG-AITSAKVMRD 374
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
G+SKGF FV F + + A KA+ EL+ K + GK + +L++ K
Sbjct: 439 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRK 480
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 14/258 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + + PK D +
Sbjct: 175 SCKVAQDENGNSKGYGFVHYETDEAAAQAI-KHVNGML-LNEKKVYVGYHIPKK--DRQS 230
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI + + ++ +ELF++ G+VT + + GK R FGF+++
Sbjct: 231 KFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTH 290
Query: 333 SSALKAVKDTEKYEIDGK 350
+A KAV+D + G+
Sbjct: 291 EAAFKAVEDLNGKDFRGQ 308
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 207
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + K +++ N+ + T+DEFR++ E G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFG-DV 266
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D + + RGF FV + + A + + + +F+ G + A K
Sbjct: 267 TSSSLARDQE--GKPRGFGFVNFTTHEAAFKAVEDLNGKDFR--GQELYVGRAQKKHERE 322
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A Q LY+KN+ D+ EK++++F G +T
Sbjct: 323 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPIT 370
>gi|351709863|gb|EHB12782.1| Heterogeneous nuclear ribonucleoprotein A3 [Heterocephalus glaber]
Length = 392
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 27/246 (10%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P ++FIGGL + +++ LR+ E G + + +M+D ++ S+GF FV++
Sbjct: 31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFDFVTY------- 83
Query: 163 KAIDELH-SKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
++E H KE E +LFIG + T+D R+ E G + + +++
Sbjct: 84 SCVEEGHDPKE----------PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV-VMR 132
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
DPQ R+RGF FV Y +C + M K+DG A + A
Sbjct: 133 DPQT-KRSRGFGFVTY---SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLT 188
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG-KRDFGFIHYAERSSALKAV 339
VK ++V I ++T +++ F+++G++ + VM +SG KR F F+ + + + K V
Sbjct: 189 VKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 248
Query: 340 KDTEKY 345
+KY
Sbjct: 249 --VQKY 252
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ ++KELF ++G+ V VM P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKS--KGFGFVSFEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ +I+GK
Sbjct: 248 VEEMNGKDINGK 259
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 32/197 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D + L++L G V++M D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A KA++E++ K++ GK + ++ K
Sbjct: 233 FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
L+I N+ +++ RK G +++D R++GF FV + + D
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPDE 345
Query: 246 SRQKMLNANFKLDGNTP 262
+ + + N ++ G+ P
Sbjct: 346 ATKAVTEMNGRIVGSKP 362
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 128/279 (45%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTDPSG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPDEATKAVT-----EMNGRIVGSKPLYV 365
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S + A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|451845251|gb|EMD58564.1| hypothetical protein COCSADRAFT_103344 [Cochliobolus sativus
ND90Pr]
Length = 569
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 36/215 (16%)
Query: 84 PTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE 143
P V ED++DK +F+ + + A LR E +G V E +++KD+
Sbjct: 163 PEPEVTEDDRDKRT-----------IFVQQISQRAETRHLRAFFERVGPVVEAQIVKDRV 211
Query: 144 SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------- 186
+G SKG +V F+ +E +A+ EL ++LKG I L+E +
Sbjct: 212 TGRSKGVGYVEFKDEESVPQAL-ELTGQKLKGVPIIAQLTEAEKNRAARPSEGGAAPGAN 270
Query: 187 ----NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNAC 242
+RL++GN+ + TE + +++ E G +E + L +D NP R++G+ FV + + +
Sbjct: 271 GAPFHRLYVGNIHFSVTEKDLQEIFEPFGE-LEQVILQRDEMNPGRSKGYGFVQFVDPSH 329
Query: 243 ADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
A + +M F+L G + + K TP+ +A
Sbjct: 330 AKNALAEM--NGFELAGRQIRVGLGNDKFTPESTA 362
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 25/181 (13%)
Query: 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
K +F+ + + R E VGP VE +++KD + R++G +V + +
Sbjct: 174 KRTIFVQQISQRAETRHLRAFFERVGPVVEA-QIVKD-RVTGRSKGVGYVEFKDEESVP- 230
Query: 246 SRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA-----------LYVKNIPDNT 294
Q + KL G P I+ ++ + +A S+ A LYV NI +
Sbjct: 231 --QALELTGQKLKG-VPIIAQL-TEAEKNRAARPSEGGAAPGANGAPFHRLYVGNIHFSV 286
Query: 295 STEKIKELFQRHGEVTKVV-----MPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ + ++E+F+ GE+ +V+ M PG+S + +GF+ + + S A A+ + +E+ G
Sbjct: 287 TEKDLQEIFEPFGELEQVILQRDEMNPGRS--KGYGFVQFVDPSHAKNALAEMNGFELAG 344
Query: 350 K 350
+
Sbjct: 345 R 345
>gi|2148976|gb|AAB58464.1| bruno [Drosophila melanogaster]
Length = 604
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 115 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 165
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--TI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 166 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 225
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 226 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 282
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNT 261
V + A + + L+ N ++G T
Sbjct: 283 VTFATKHAAISAIKVTLSQNKIMEGCT 309
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 517 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 576
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 577 AIKAMNGFQVGTKRLKVQLKKPK 599
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ ++KELF ++G+ V VM P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKS--KGFGFVSFEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ +I+GK
Sbjct: 248 VEEMNGKDINGK 259
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 32/197 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D + L++L G V++M D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A KA++E++ K++ GK + ++ K
Sbjct: 233 FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
L+I N+ +++ RK G +++D R++GF FV + + D
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF---SSPDE 345
Query: 246 SRQKMLNANFKLDGNTP 262
+ + + N ++ G+ P
Sbjct: 346 ATKAVTEMNGRIVGSKP 362
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 128/279 (45%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTDPSG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPDEATKAVT-----EMNGRIVGSKPLYV 365
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S + A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + ++ELF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L++L G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FV+F E A+KA+ ++ KE+ G+ + ++ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>gi|302811484|ref|XP_002987431.1| hypothetical protein SELMODRAFT_269263 [Selaginella moellendorffii]
gi|300144837|gb|EFJ11518.1| hypothetical protein SELMODRAFT_269263 [Selaginella moellendorffii]
Length = 428
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +PK ++E+L + E G VF++ ++KDK + +S+G F+++ S+ A
Sbjct: 8 PDAVKLFVGQIPKHLTQEELLPIFEEAGAVFDINIIKDKSTKQSRGCCFLTYSSRSEADN 67
Query: 164 AIDELHSKE--------LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
AID H+K+ ++ K L +++LFIG +PK+ TE E R V + G ++
Sbjct: 68 AIDLFHNKKTISPMNSPMQVKYADGELERLEHKLFIGMLPKSVTEAEVRDVFSEYG-NIK 126
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
+++IK Q ++ F L Y + LN ++++G + + WAD
Sbjct: 127 ELQVIKGSQQTAKACAF---LKYETREEAAGAVEALNGIYRMEGASSALVVKWAD 178
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI +P + + +L G+V ++ DK +G SK F FVS+ S E A+
Sbjct: 340 PPGANLFIYHIPAEFGDSELSTAFASFGNVISAKVFVDKTTGISKCFGFVSYDSPEAAQS 399
Query: 164 AIDELHSKELKGKTIRCSL 182
AI+ ++ +L GK ++ L
Sbjct: 400 AINVMNGFQLSGKRLKVQL 418
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 13/255 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L +E L + IG V +R+ +D + S G+A+V+F+S A AID
Sbjct: 37 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAID 96
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+ + + GK IR S+ R +GN+ KN + K + D TI K
Sbjct: 97 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKV 156
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP--KSTPDHSAAA 279
+ N +G+ FV + A Q ++ ++ N + + P + +
Sbjct: 157 AMDGQGNSKGYGFVQFETQEAA----QAAIDNVNGMELNDKQV-YVGPFQRRAERSNTGE 211
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
++ +YVKN+ +N S EK++E F HG VT V+ + GK + FGF+ Y E A A
Sbjct: 212 AKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAA 271
Query: 339 VKDTEKYEIDGKSHL 353
V+ + Y D K+ +
Sbjct: 272 VEKLDGYTEDEKTWV 286
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 128/280 (45%), Gaps = 45/280 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D + G SKG+ FV F ++E A+ AID +
Sbjct: 127 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQ-GNSKGYGFVQFETQEAAQAAIDNV 185
Query: 169 HSKELKGKTI----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+ EL K + R + E K N +++ N+ +N ++++ R+ + G V +
Sbjct: 186 NGMELNDKQVYVGPFQRRAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHG-AVTSC 244
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+++D + +++GF FV Y A + +K+ + D T + A K+ +
Sbjct: 245 VIMRDEEG--KSKGFGFVCYEEPEGAAAAVEKL--DGYTEDEKTWVVCRAQKKAERE--- 297
Query: 278 AASQVKA-----------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKS 319
+++KA LY+KN+ D T EK++ELF+ G +T VM
Sbjct: 298 --AELKAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASG 355
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R F+ ++ A +AV E++GK P++V
Sbjct: 356 VSRGSAFVAFSSPDEATRAVT-----EMNGKMVGAKPLYV 390
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ ++I L +E LR+L + G + R+M+D SG S+G AFV+F S + A +A+
Sbjct: 317 GANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDA-SGVSRGSAFVAFSSPDEATRAV 375
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + K + +L++ K
Sbjct: 376 TEMNGKMVGAKPLYVALAQRK 396
>gi|452822947|gb|EME29962.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Galdieria
sulphuraria]
Length = 368
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 17/146 (11%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N S++F+GGL + +EE L+ E G V + +M+DK +G +GF FV+F +E A +A
Sbjct: 48 NNSKIFVGGLSWETTEETLQKYFESYGRVLDCVIMRDKHTGHPRGFGFVTFEKEESADRA 107
Query: 165 IDELHSKELKGKTI-------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
+ H EL G+ + R +++ ++F+G +P + TE++F + E +G
Sbjct: 108 ATKRH--ELDGRQVEAKKAVPKAEYITRSQVTKPTRKIFVGGLPLSCTEEDFMEYFERLG 165
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLY 237
VE ++ D Q +RGF FV +
Sbjct: 166 HVVEA-HIMYDHQT-GISRGFGFVTF 189
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GGLP +EED + E +G V E +M D ++G S+GF FV+F S++ +K ++
Sbjct: 142 KIFVGGLPLSCTEEDFMEYFERLGHVVEAHIMYDHQTGISRGFGFVTFSSEDMVEKVFEQ 201
Query: 168 LHSKELKGKTIRCSLSETKN 187
E+KGK + +E K+
Sbjct: 202 SQ-HEIKGKIVEVKKAEPKH 220
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 128/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 203 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALD 262
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 263 TMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGK-ILSSK 321
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N L N + + KS D +
Sbjct: 322 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGTLLKNC-RVFVSRFKSRKDRESE 374
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN D+ ++KE+F ++G V + SGK + FGF+ +A
Sbjct: 375 LKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHE 434
Query: 334 SALKAVKDTEKYEIDGK 350
+A AV++ +I+G+
Sbjct: 435 AAKNAVEEMNGKDINGQ 451
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ KD+ ++L + V+I D + L+++ G V++M D SG+SKG
Sbjct: 366 KSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTD-SSGKSKG 424
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AK A++E++ K++ G+ I ++ K
Sbjct: 425 FGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCR 484
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
+L+I N+ +++ RK G +I +K Q R++GF + + ++ +
Sbjct: 485 GVKLYIKNLDDTIDDEKLRKEFASFG----SISRVKVMQEEGRSKGFGLICFSSH---EE 537
Query: 246 SRQKMLNANFKLDGNTP 262
+ + M N ++ G+ P
Sbjct: 538 AIKAMTEMNGRILGSKP 554
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 37/259 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 293 VFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 350
Query: 169 HSKELKGKTIRCSL--------SETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ LK + S SE KN+ ++I N + + ++V G +
Sbjct: 351 NGTLLKNCRVFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTL 410
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+++++ D S+ GF FV + ++ A + ++M N K D N I + +
Sbjct: 411 -SVKVMTDSSGKSK--GFGFVSFASHEAAKNAVEEM---NGK-DINGQLIFVGRAQKKIE 463
Query: 275 HSAAASQV--------------KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
A Q+ LY+KN+ D EK+++ F G +++V + +
Sbjct: 464 RQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVMQEEGR 523
Query: 321 KRDFGFIHYAERSSALKAV 339
+ FG I ++ A+KA+
Sbjct: 524 SKGFGLICFSSHEEAIKAM 542
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR G + V++M+ E G SKGF + F S E A KA+
Sbjct: 485 GVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVMQ--EEGRSKGFGLICFSSHEEAIKAM 542
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 543 TEMNGRILGSKPLNIALAQ 561
>gi|442627567|ref|NP_723738.2| arrest, isoform F [Drosophila melanogaster]
gi|440213732|gb|AAN10811.2| arrest, isoform F [Drosophila melanogaster]
Length = 620
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 115 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 165
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGK--TI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 166 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHPI 225
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 226 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 282
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNT 261
V + A + + L+ N ++G T
Sbjct: 283 VTFATKHAAISAIKVTLSQNKIMEGCT 309
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 533 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 592
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 593 AIKAMNGFQVGTKRLKVQLKKPK 615
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 22/259 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E K AI+
Sbjct: 43 ASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIE 102
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+L+ +KG+ R S+ +FI N+ + + G + + +
Sbjct: 103 KLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFG-NILSCK 161
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGN----TPTISWADPKSTP 273
+ D +++GF FV + N A R+ + N L+G P +S D +S
Sbjct: 162 IAND--ETGKSKGFGFVHFENEEAA---REAIDAINGMLLNGQEVYVAPHVSKKDRQSKL 216
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
D A + +YVKN+ + E + LF+ +G +T V + GK R FGF+ +
Sbjct: 217 DE--ARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENH 274
Query: 333 SSALKAVKDTEKYEIDGKS 351
A+KAV+ E G++
Sbjct: 275 EDAVKAVEALNDTEYKGQT 293
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 132/278 (47%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L + G++ ++ D E+G+SKGF FV F ++E A++AID +
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKIAND-ETGKSKGFGFVHFENEEAAREAIDAI 191
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ + + L E + +++ N+ TE++F + + G +
Sbjct: 192 NGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGT-I 250
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++ L KD + ++RGF FV + N+ A + + + + +K G T + A K
Sbjct: 251 TSVALEKDAE--GKSRGFGFVDFENHEDAVKAVEALNDTEYK--GQTLYVGRAQKKYERL 306
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
++ A Q L++KN+ D+ EK+KE F G +T + ++GK
Sbjct: 307 QELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTENGKS 366
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A +A+ + + + GK P++V
Sbjct: 367 KGFGFVCFSTPEEATRAITEKNQQIVAGK-----PLYV 399
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++L N + V++ L +A+EED +L +P G + V L KD E G+S+GF
Sbjct: 209 KKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAE-GKSRGFG 267
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV F + E A KA++ L+ E KG+T+ ++ K
Sbjct: 268 FVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKK 302
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L++ P G + R+M+ E+G+SKGF FV F + E A +AI
Sbjct: 326 GINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRT-ENGKSKGFGFVCFSTPEEATRAI 384
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 385 TEKNQQIVAGKPLYVAIAQRKD 406
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP +
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGP-I 134
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 135 VSASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 190
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 191 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 250
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 251 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 283
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 210 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 268
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 269 TEKNQQIVAGKPLYVAIAQRK 289
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 11/243 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++ G L D +E L ++ IG V +R+ +D + +S G+A+++F + A++A+D
Sbjct: 49 ASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 108
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+ + G+ R S R GNV KN + K + D I K
Sbjct: 109 TLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKV 168
Query: 223 PQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS-AAAS 280
P ++RGF FV + ++ A+ + K LN + T+ A K T D S +
Sbjct: 169 ALTPDGKSRGFGFVHFESDESAEAAIAK-LNG---MQIGEKTVYVAQFKKTADRSDGSPK 224
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+K+IP + + EKI+E F GE+T M G+R F F+++AE A AV+
Sbjct: 225 NFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR-FAFVNFAEFEQARAAVE 283
Query: 341 DTE 343
D +
Sbjct: 284 DMD 286
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L+ G++ + E +V +GP V +I + +D ++ G++++ ++N A A+ +
Sbjct: 51 LYAGDLAPDVNEAVLYEVFNGIGP-VASIRVCRDSVT-RKSLGYAYINFHNVADAERALD 108
Query: 249 KMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
+ N+ ++G + W+ S A + +YVKN+ N + + + F G
Sbjct: 109 TL---NYSPINGRPCRLMWSHRDPALRRSGAGN----VYVKNLDRNIDNKALYDTFSLFG 161
Query: 308 EV--TKVVMPP-GKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ KV + P GKS R FGF+H+ SA A+ +I K+
Sbjct: 162 NILSCKVALTPDGKS--RGFGFVHFESDESAEAAIAKLNGMQIGEKT 206
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +K+LF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEIGGK 259
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L+DL G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 129/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ + + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEIGGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|324507276|gb|ADY43089.1| RNA-binding motif, single-stranded-interacting protein 1 [Ascaris
suum]
Length = 673
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 92/179 (51%), Gaps = 27/179 (15%)
Query: 59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDA 118
++ + +A RN++D+PH + P + + V+I GL +
Sbjct: 274 SANRASAAGTVRNNNDSPHSDA----------------------PLSSTNVYIRGLDPNT 311
Query: 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK-ELKGKT 177
++EDLR C+ G + + + DK +G+ KG+ FV F S E A +A++ L+ + +++ +
Sbjct: 312 TDEDLRQKCDQYGVILSTKAIMDKATGQCKGYGFVDFESAEAAMRAVEGLNQEGKVQAQM 371
Query: 178 IRCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFS 233
+ S+++ + L+ N+P N+TE + +K +E G + T ++K+ SR GF+
Sbjct: 372 AKVSIAQQEQDPTNLYFANLPANFTEQDLQKTLERFGMVIST-RILKNQDGASRGVGFA 429
>gi|307105138|gb|EFN53389.1| hypothetical protein CHLNCDRAFT_36600 [Chlorella variabilis]
Length = 321
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P +++F+GGL D +EE LRD G + E +M+D+++G +GF FV+F A
Sbjct: 6 PTSAKLFLGGLSWDTTEEKLRDHFSKYGSIVEAVVMRDRQTGRPRGFGFVTFTEPAAADA 65
Query: 164 AIDELH---SKELKG-KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
++++H +++ K++ + ++F+G + + TED+FR+ G VE ++
Sbjct: 66 VVEDVHVIDGRQIDAKKSVPQEMKPKARKVFVGGLSPDTTEDQFREYFSQFGEVVEA-QI 124
Query: 220 IKDPQNPSRNRGFSFVLYYNNACAD 244
++D + R+RGF FV + +A A+
Sbjct: 125 MQDHMS-GRSRGFGFVTFAEDASAE 148
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 178 IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+RC T +LF+G + + TE++ R G VE + +++D Q R RGF FV +
Sbjct: 1 MRC-CRPTSAKLFLGGLSWDTTEEKLRDHFSKYGSIVEAV-VMRDRQT-GRPRGFGFVTF 57
Query: 238 YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTE 297
A AD ++ +DG KS P + + ++V + +T+ +
Sbjct: 58 TEPAAAD----AVVEDVHVIDGRQIDAK----KSVPQE--MKPKARKVFVGGLSPDTTED 107
Query: 298 KIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+ +E F + GEV + +M SG+ R FGF+ +AE +SA +++ GK
Sbjct: 108 QFREYFSQFGEVVEAQIMQDHMSGRSRGFGFVTFAEDASAESVFAAGTMHDLGGK 162
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P +VF+GGL D +E+ R+ G+V E ++M+D SG S+GF FV+F A+
Sbjct: 90 PKARKVFVGGLSPDTTEDQFREYFSQFGEVVEAQIMQDHMSGRSRGFGFVTFAEDASAES 149
Query: 164 AIDELHSKELKGKTI 178
+L GK +
Sbjct: 150 VFAAGTMHDLGGKKV 164
>gi|261488392|emb|CBH19571.1| RNA recognition motif containing protein [Oryza sativa Indica
Group]
Length = 188
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 89/173 (51%), Gaps = 19/173 (10%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GGLP+D +E D G++ + +M+DK + + +GF F+++ + + +D+
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 168 LHSKELKGKTIRCSLSETKN----------RLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+H E GK + + K+ ++F+G +P+ ED+F+ + GP V+
Sbjct: 84 IH--EFNGKQVEIKRTIPKDSVQSKDFKTKKIFVGGLPQAQAEDDFKHFFQKYGPVVDH- 140
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
++++D Q R+RGF F+++ ++ D L AN K D +W K
Sbjct: 141 QIMRDHQT-KRSRGFGFIVFSSDQVVD-----DLLANGKYDLILLVQTWRSRK 187
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 16/250 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++ G L D +E L ++ IG V +R+ +D + +S G+A+++F + A++A+D
Sbjct: 48 ASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+ +KG+ R S R GNV KN + K + D I K
Sbjct: 108 TLNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKV 167
Query: 223 PQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS-AAAS 280
P ++RGF FV + ++ A+ + K LN + T+ A K T + +
Sbjct: 168 ALTPDGKSRGFGFVHFESDESAEAAIAK-LNG---MQIGEKTVYVAPFKKTAERNDGTPK 223
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+K+IP + + EKIKE F GE+T + + G+R F F++YAE A AV+
Sbjct: 224 NFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR-FAFVNYAEFEQARAAVE 282
Query: 341 DTEKYEIDGK 350
E+DGK
Sbjct: 283 -----EMDGK 287
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D + +L+ + EP G V V++M D + G S+GF FV F + E A KA+ ++
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD-DKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 169 HSKELKGKTIRCSLSETK 186
H K + GK + + E +
Sbjct: 436 HLKLIGGKPLYVGMHEKR 453
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L+ G++ + TE +V +GP V +I + +D ++ G++++ ++N A A+ +
Sbjct: 50 LYAGDLAPDVTEAVLYEVFNAIGP-VASIRVCRDSVT-RKSLGYAYINFHNVADAERALD 107
Query: 249 KMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
+ N+ + G + W+ S A + +YVKN+ N + + + F G
Sbjct: 108 TL---NYSPIKGRPCRLMWSHRDPALRRSGAGN----VYVKNLDRNIDNKALYDTFSLFG 160
Query: 308 EV--TKVVMPP-GKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ KV + P GKS R FGF+H+ SA A+ +I K+
Sbjct: 161 NILSCKVALTPDGKS--RGFGFVHFESDESAEAAIAKLNGMQIGEKT 205
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LYVKN+ ++ ++K++F+ G VT V VM K R FGF+ ++ A KAV D
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 344 KYEIDGKSHLHFPVFV 359
I GK P++V
Sbjct: 437 LKLIGGK-----PLYV 447
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 16/250 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++ G L D +E L ++ IG V +R+ +D + +S G+A+++F + A++A+D
Sbjct: 48 ASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+ +KG+ R S R GNV KN + K + D I K
Sbjct: 108 TLNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKV 167
Query: 223 PQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS-AAAS 280
P ++RGF FV + ++ A+ + K LN + T+ A K T + +
Sbjct: 168 ALTPDGKSRGFGFVHFESDESAEAAIAK-LNG---MQIGEKTVYVAPFKKTAERNDGTPK 223
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+K+IP + + EKIKE F GE+T + + G+R F F++YAE A AV+
Sbjct: 224 NFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR-FAFVNYAEFEQARAAVE 282
Query: 341 DTEKYEIDGK 350
E+DGK
Sbjct: 283 -----EMDGK 287
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L +D + +L+ + EP G V V++M D + G S+GF FV F + E A KA+ ++
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD-DKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 169 HSKELKGKTIRCSLSETK 186
H K + GK + + E +
Sbjct: 436 HLKLIGGKPLYVGMHEKR 453
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L+ G++ + TE +V +GP V +I + +D ++ G++++ ++N A A+ +
Sbjct: 50 LYAGDLAPDVTEAVLYEVFNAIGP-VASIRVCRDSVT-RKSLGYAYINFHNVADAERALD 107
Query: 249 KMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
+ N+ + G + W+ S A + +YVKN+ N + + + F G
Sbjct: 108 TL---NYSPIKGRPCRLMWSHRDPALRRSGAGN----VYVKNLDRNIDNKALYDTFSLFG 160
Query: 308 EV--TKVVMPP-GKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ KV + P GKS R FGF+H+ SA A+ +I K+
Sbjct: 161 NILSCKVALTPDGKS--RGFGFVHFESDESAEAAIAKLNGMQIGEKT 205
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LYVKN+ ++ ++K++F+ G VT V VM K R FGF+ ++ A KAV D
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 344 KYEIDGKSHLHFPVFV 359
I GK P++V
Sbjct: 437 LKLIGGK-----PLYV 447
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 14/258 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 56 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 115
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 116 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 175
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + PK D +
Sbjct: 176 SCKVAQDENGNSKGYGFVHYETDEAA-HQAIKHVNGML-LNEKKVYVGHHIPKK--DRQS 231
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI S ++ +ELF+++G++T + + GK R FGF+++
Sbjct: 232 KFEEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTH 291
Query: 333 SSALKAVKDTEKYEIDGK 350
SA KAV++ + G+
Sbjct: 292 ESAAKAVEELHGKDFRGQ 309
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 83/155 (53%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +AS+++ R+L E GD+ L +D+E G+S+GF
Sbjct: 226 KKDRQSKFEEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQE-GKSRGFG 284
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A KA++ELH K+ +G+ + ++ K+
Sbjct: 285 FVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 344
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +++ R++ + GP + + ++++D
Sbjct: 345 NLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 378
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 125/253 (49%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + +E L ++ +G V +R+ +D + S G+A+V+F + E +++A++
Sbjct: 80 TSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALE 139
Query: 167 ELHSKELKGKTIRCSLSET---KNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
+L+ ++G+ R S+ + R GN+ KN E K + D I K
Sbjct: 140 QLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKV 199
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
N + G+ FV Y +N A+ + K +N N + S D A +
Sbjct: 200 ASNEHGSLGYGFVHYESNDAAE-AAIKHVNGMLL---NDKKVYVGHHISKKDRQAKIEEA 255
Query: 283 KA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
+A +YVKN+ + E+ ++LF+++G++T + + GK R FGF++++E A K
Sbjct: 256 RAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAK 315
Query: 338 AVKDTEKYEIDGK 350
AV++ E G+
Sbjct: 316 AVEELNDTEFHGQ 328
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 118/278 (42%), Gaps = 39/278 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D G + ++ ++ S G+ FV + S + A+ AI +
Sbjct: 170 IFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHG--SLGYGFVHYESNDAAEAAIKHV 227
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + + E + +++ N+ T++EF K+ E G +
Sbjct: 228 NGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKYG-KI 286
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+ + D + ++RGF FV + + A + +++ + F G + A KS
Sbjct: 287 TSAAIATDQEG--KSRGFGFVNFSEHEQAAKAVEELNDTEF--HGQKLFLGRAQKKSERE 342
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ + Q LY+KN+P++ E+++E F G T VM
Sbjct: 343 EELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTPTGAS 402
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R FGF+ Y+ A KAV E++GK + P++V
Sbjct: 403 RGFGFVCYSAPEEANKAVA-----EMNGKMIENRPLYV 435
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 28/171 (16%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+KD+ A++ + + V++ L ++E+ L E G + + D+E G+S+GF
Sbjct: 244 SKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQE-GKSRGF 302
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN----------------------- 187
FV+F E A KA++EL+ E G+ + ++ K+
Sbjct: 303 GFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQG 362
Query: 188 -RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+P+++ ++ ++ G + ++++ P S RGF FV Y
Sbjct: 363 VNLYIKNLPEDFDDERLQEEFAPFG-TTTSAKVMRTPTGAS--RGFGFVCY 410
>gi|383513878|gb|AFH41529.1| Dead end [Salmo salar]
Length = 366
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 100 LALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
L PP G EVFI +P+D E+ L L +G ++E RLM + SG+++GFA+ + S
Sbjct: 45 LGAPPGPGCEVFISQIPRDVFEDQLIPLFRAVGPLWEFRLMMNF-SGQNRGFAYAKYDSP 103
Query: 159 EFAKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
A AI LH + L G + S K +L +G +P + ++ +V+ D GVE +
Sbjct: 104 ASAAAAIRSLHGRALESGARLGVRRSTEKRQLCLGELPTSTRREQLLQVLLDFSEGVEGV 163
Query: 218 ELIKDPQNPSRNRGFS-FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
L P +G S V+Y ++ A +++ ++ A K G T+ W S P H
Sbjct: 164 SLRAGPG----EQGMSAVVVYASHHAASMAKKVLIEAFKKRFGLAITLKWQS-SSRPKH 217
>gi|297806589|ref|XP_002871178.1| hypothetical protein ARALYDRAFT_349841 [Arabidopsis lyrata subsp.
lyrata]
gi|297317015|gb|EFH47437.1| hypothetical protein ARALYDRAFT_349841 [Arabidopsis lyrata subsp.
lyrata]
Length = 692
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 125/255 (49%), Gaps = 24/255 (9%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ LP A+EE+L + G++ EV L+ DKE+ S+G AFV ++ E+AK+A++EL
Sbjct: 214 LFVRNLPYTATEEELTEHFSKFGEISEVHLVLDKETKNSRGMAFVLYQIPEYAKRAMEEL 273
Query: 169 HSKELKGKTI----------RCSLSETKNRLFIGNVPKNWTE--DEFRKVIEDVGPGVET 216
+K+ +G+ + + S++ + R N+PK + + +E RK E G
Sbjct: 274 DNKDFQGRLLHILPAKKPDKQVSVTSSMFRNNSSNLPKAFKQKREEQRKASEASGNTKAW 333
Query: 217 IELIKDP----QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
P +N R G + + + C D + + L + ++ A + T
Sbjct: 334 NSFFMRPDTVVENIVRCYGVTKSEFLDRECDDPAVRLALGETKVIMETKEALAKAGVRVT 393
Query: 273 P--DHSAAASQVK-----ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG 325
+ SA VK L VKN+P +S +++ ++F R G + K+V+P K+ F
Sbjct: 394 SLEEFSARKGDVKNRSKHILLVKNLPFASSEKELAQMFGRFGSLDKIVLPRTKTLAL-FV 452
Query: 326 FIHYAERSSALKAVK 340
F+ AE +A+K +K
Sbjct: 453 FLKPAEARAAMKGMK 467
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 94 DKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV 153
D+H +L N +A++++LR LC P G + V L +K G G+ F+
Sbjct: 597 DRHKLILRFSENKRTF-------EATKQELRQLCSPFGQIKRVGL-PEKNPGRYAGYGFI 648
Query: 154 SFRSKE---FAKKAIDELH 169
F +K+ AKKA+ H
Sbjct: 649 VFGTKQEALNAKKALSNTH 667
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + +RG+ FV + + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSRGYGFVHFETHDAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+KN ++ EK+KE+F + G T V VM G R FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++G+
Sbjct: 250 EMNGKELNGR 259
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+++ G+ VR+M D ESG +G
Sbjct: 174 KSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTD-ESGGGRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF + E A+KA+DE++ KEL G+ + ++ K
Sbjct: 233 FGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKK 269
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 123/280 (43%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G S+G+ FV F + + A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SRGYGFVHFETHDAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETKN----------RLFIGNVPKNWTED----EFRKVIEDVGPGV 214
+ L + + +++ R F KN+ ED + +++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFG-NA 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++ ++ D RGF FV + N+ A + +M N K L+G + A K
Sbjct: 218 TSVRVMTD--ESGGGRGFGFVSFENHEDAQKAVDEM---NGKELNGRIMFVGRAQKKMER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
Q LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 273 QMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMMEGGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVATKPLYV 365
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 8/249 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
+Y+KN + E +KELF + V + P GKS + FGF+ Y + A KAV++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKAVEE 247
Query: 342 TEKYEIDGK 350
EI GK
Sbjct: 248 MNGKEISGK 256
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 130/276 (47%), Gaps = 39/276 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTI----------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+ L + + R + K + F KN+ E+ + ++++ +++
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSKTLSVK 218
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK------- 270
+++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 VMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVERQAEL 273
Query: 271 -----STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRD 323
+ Q LY+KN+ D EK+++ F G +T KV++ G+S +
Sbjct: 274 KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KG 331
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
FGF+ ++ A KAV E++G+ P++V
Sbjct: 332 FGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 362
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 32/172 (18%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL---FSKTLSVKVMRD-PSGKSKG 229
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 230 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 289
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 290 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 337
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 289 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 346
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 347 VTEMNGRIVGSKPLYVALAQRK 368
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 126/276 (45%), Gaps = 35/276 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K+ + L D G + ++ D E GES+G+ FV F +E A+KAID +
Sbjct: 98 IFIKNLNKEIDNKALYDTFSAFGTILSCKVAAD-EKGESRGYGFVHFEKEEDAQKAIDTV 156
Query: 169 HSKELKGKTIRCS--LSE---------TKNRLFIGNVPKNW-TEDEFRKVIEDVGPGVET 216
+ K L + + + LS T +++ N+P ++ T D+ +K+ E G T
Sbjct: 157 NGKMLLKQVVTVTKFLSRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITST 216
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
L KD + SR GF FV + N+ A+ + + M + D + A K +
Sbjct: 217 F-LAKDENDKSR--GFGFVNFENSEAANAAVEAMNEKEIETDRKL-FVGRAMKKHERERE 272
Query: 277 AAASQVKA------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRD 323
K LY+K++P++ + + +++ F + G +T + +M R
Sbjct: 273 LKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGDSRG 332
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
FGF+++ A A+++ IDGK P++V
Sbjct: 333 FGFVNFDSADEAAAAIQEMHGSMIDGK-----PLYV 363
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 10/249 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + +E L + +G V +R+ +D S +S G+A+V+++ AK A++
Sbjct: 8 ASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALE 67
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +++ K R ++ R GN+ KN ++ K + D TI K
Sbjct: 68 ELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCKV 127
Query: 223 PQN-PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +RG+ FV + A + +N L + K
Sbjct: 128 AADEKGESRGYGFVHFEKEEDAQKAIDT-VNGKMLLKQVVTVTKFLSRKEREQQ--GGRT 184
Query: 282 VKALYVKNIPDNTST-EKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
+YVKN+PD+ +T + +K+LF++ G +T + ++ K R FGF+++ +A AV
Sbjct: 185 YTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAV 244
Query: 340 KDTEKYEID 348
+ + EI+
Sbjct: 245 EAMNEKEIE 253
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S ++I LP+D +E+ LRD G + +++M D +G+S+GF FV+F S + A AI
Sbjct: 291 SNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTD-NNGDSRGFGFVNFDSADEAAAAIQ 349
Query: 167 ELHSKELKGKTIRCSLSETK 186
E+H + GK + +L+ K
Sbjct: 350 EMHGSMIDGKPLYVALALRK 369
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 126/258 (48%), Gaps = 19/258 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + + PK D +
Sbjct: 175 SCKVAQDENGNSKGYGFVHYETDEAAAQAI-KHVNGML-LNEKKVYVGYHIPKK--DRQS 230
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI + + E ++LF++ G+VT + + GK R FGF+++
Sbjct: 231 KFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTH 290
Query: 333 SSALKAVKDTEKYEIDGK 350
+A KAV+ E++GK
Sbjct: 291 EAAFKAVE-----ELNGK 303
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 83/158 (52%), Gaps = 27/158 (17%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + D ++ED R L E GDV L +D+E G+++GF
Sbjct: 225 KKDRQSKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQE-GKTRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A KA++EL+ K+ +G+ + ++ K+
Sbjct: 284 FVNFTTHEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 343
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQ 224
L+I N+ + +++ R++ + GP + + ++++D PQ
Sbjct: 344 NLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRDVPQ 380
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 207
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + K +++ N+ + T+++FR++ E G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFG-DV 266
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D + + RGF FV + + A + +++ +F+ G + A K
Sbjct: 267 TSSSLARDQE--GKTRGFGFVNFTTHEAAFKAVEELNGKDFR--GQDLYVGRAQKKHERE 322
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A Q LY+KN+ D+ EK++++F G +T
Sbjct: 323 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPIT 370
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 133/285 (46%), Gaps = 12/285 (4%)
Query: 75 TPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF 134
TP V+++ K ++ E P S +++G L D +E L + P G V
Sbjct: 2 TPTVKDKSKVVVTLPSTELSLEVFFRGHYPMAS-LYVGDLHSDVTEAMLYEKFSPAGPVL 60
Query: 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLF---I 191
+R+ +D + S G+A+V+F+ A++A+D ++ +KGK IR S+ L +
Sbjct: 61 SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGV 120
Query: 192 GNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
GNV KN + K + D I K + + ++G++FV + AD + +KM
Sbjct: 121 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKM 180
Query: 251 LNANFKLDGNTPTISWADPKST-PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
N D + K + A A + +Y+KN + + +KELF + G+
Sbjct: 181 -NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKT 239
Query: 310 TKV-VM--PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
V VM P GKS + FGF+ Y + A KAV++ E+ GK+
Sbjct: 240 LSVKVMRDPSGKS--KGFGFVSYEKHEDANKAVEEMNGKEMSGKA 282
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 130/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 123 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 180
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + +D +++ G +
Sbjct: 181 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTL 240
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 241 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EMSGKAIFVGRAQKKVERQ 295
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 296 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 354
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 355 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 387
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +++L++L G V++M+D SG+SKG
Sbjct: 196 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRD-PSGKSKG 254
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 255 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 314
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 315 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 362
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 314 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 371
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 372 VTEMNGRIVGSKPLYVALAQRK 393
>gi|452002199|gb|EMD94657.1| hypothetical protein COCHEDRAFT_1092247 [Cochliobolus
heterostrophus C5]
Length = 572
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 104/215 (48%), Gaps = 36/215 (16%)
Query: 84 PTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE 143
P + ED++DK +F+ + + A LR E +G V E +++KD+
Sbjct: 166 PEPEITEDDRDKRT-----------IFVQQISQRAETRHLRAFFERVGPVVEAQIVKDRV 214
Query: 144 SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------- 186
+G SKG +V F+ +E +A+ EL ++LKG I L+E +
Sbjct: 215 TGRSKGVGYVEFKDEESVPQAL-ELTGQKLKGVPIIAQLTEAEKNRAARPSEGGTAPGAN 273
Query: 187 ----NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNAC 242
+RL++GN+ + TE + +++ E G +E + L +D NP R++G+ FV + + +
Sbjct: 274 GAPFHRLYVGNIHFSVTEKDLQEIFEPFGE-LEQVILQRDEMNPGRSKGYGFVQFVDPSH 332
Query: 243 ADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
A + +M F+L G + + K TP+ +A
Sbjct: 333 AKNALAEM--NGFELAGRQIRVGLGNDKFTPESTA 365
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
K +F+ + + R E VGP VE +++KD + R++G +V + +
Sbjct: 177 KRTIFVQQISQRAETRHLRAFFERVGPVVEA-QIVKD-RVTGRSKGVGYVEFKDEESVP- 233
Query: 246 SRQKMLNANFKLDGNTPTISWA-----DPKSTPDHSAAASQVKA-----LYVKNIPDNTS 295
Q + KL G P I+ + + P A LYV NI + +
Sbjct: 234 --QALELTGQKLKG-VPIIAQLTEAEKNRAARPSEGGTAPGANGAPFHRLYVGNIHFSVT 290
Query: 296 TEKIKELFQRHGEVTKVV-----MPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+ ++E+F+ GE+ +V+ M PG+S + +GF+ + + S A A+ + +E+ G+
Sbjct: 291 EKDLQEIFEPFGELEQVILQRDEMNPGRS--KGYGFVQFVDPSHAKNALAEMNGFELAGR 348
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 144/309 (46%), Gaps = 24/309 (7%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S A A++ +S E D +E + + GED D LP + +++G L
Sbjct: 2 SAAEANQVQESLEKLNLDSAPVATQETNVSSGNEGEDAADSSQ----LPDTSASLYVGEL 57
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
+E L ++ P+G V +R+ +D + +S G+A+V+F E +KAI+EL+ +
Sbjct: 58 NPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEELNYSLID 117
Query: 175 GKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
G+ R S+ + +FI N+ G + + ++ D Q
Sbjct: 118 GRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGK-ILSCKVATDEQGN 176
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA-- 284
S + F FV Y A+ ++ + N N L N + S D + ++KA
Sbjct: 177 S--KCFGFVHY---ETAEAAKAAIENVNGMLL-NDREVYVGKHVSKKDRESKFEEMKANF 230
Query: 285 --LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
+YVKNI S E++++LF+ +G++T + + GK + FGF+++ +A+KAV++
Sbjct: 231 TNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEE 290
Query: 342 TEKYEIDGK 350
+I+G+
Sbjct: 291 LNDKDINGQ 299
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + SEE++R L EP G + + L KD E G+SKGF
Sbjct: 216 KKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAE-GKSKGFG 274
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F S E A KA++EL+ K++ G+ + ++ K
Sbjct: 275 FVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKK 309
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 126/278 (45%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G SK F FV + + E AK AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EQGNSKCFGFVHYETAEAAKAAIENV 198
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + E+K +++ N+ ++E+E RK+ E G +
Sbjct: 199 NGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGK-I 257
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
++ L KD + +++GF FV + ++ A + +++ + + ++G + A K
Sbjct: 258 TSLHLEKDAE--GKSKGFGFVNFESHEAAVKAVEELNDKD--INGQKLYVGRAQKKRERI 313
Query: 272 ---TPDHSAA------ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ AA Q L+VKN+ D+ + K++E F+ G +T + + GK
Sbjct: 314 EELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + GK P++V
Sbjct: 374 KGFGFVCFSSPEEATKAITEMNQRMFHGK-----PLYV 406
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L L + +P G + R+M D E G+SKGF FV F S E A KAI
Sbjct: 333 GVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVD-EHGKSKGFGFVCFSSPEEATKAI 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + GK + +L++ K+
Sbjct: 392 TEMNQRMFHGKPLYVALAQRKD 413
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSET---KNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S R +GN+ KN K + D +I K
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST----PDHSAA 278
N +RGF FV + + A QK +N + N + KS + A
Sbjct: 131 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ + + +++LF + G+ V VM R FGFI++ + A K
Sbjct: 187 ALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVDHMNGKEVSGQ 259
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + +++ L D E+ L+DL G V++M+D +G+S+G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS-------------------ETKNR-- 188
F F++F E A+KA+D ++ KE+ G+ + + E +NR
Sbjct: 233 FGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + +D ++V G I K S ++GF FV +
Sbjct: 293 GVNLYVKNLDDSINDDRLKEVFSTYG----VITSAKVMTESSHSKGFGFVCF 340
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 121/278 (43%), Gaps = 40/278 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + +++ ++ S+GF FV F + E A+KAI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ + +++ N+ + E + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGK-T 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTP 273
+++++++D SR GF F+ + + A + M N K + G + A ++
Sbjct: 218 QSVKVMRDSNGQSR--GFGFINFEKHEEAQKAVDHM---NGKEVSGQLLYVGRAQKRAER 272
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LYVKN+ D+ + +++KE+F +G +T + S
Sbjct: 273 QNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHS 332
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 KGFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +++ L+++ G + ++M ES SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|449462184|ref|XP_004148821.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
gi|449511891|ref|XP_004164081.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
Length = 675
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 98/179 (54%), Gaps = 17/179 (9%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N +++F+G +P+ A+EE +R L E G+V EV L+KDK +G+ +G FV + + E A +A
Sbjct: 50 NFAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRA 109
Query: 165 IDELHSKE-LKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
I LH++ L G +R + L + +LF+G++ K +E E +++ G
Sbjct: 110 IRNLHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYG-V 168
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPK 270
VE + L++D SR GF + + A A + LN F + G + P ++ +ADPK
Sbjct: 169 VEDVYLMRDEMKQSRGCGFVKYSHRDMALAAIN---ALNGIFTMRGCDQPLSVRFADPK 224
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G+VP+ TE+ R + E+ G +E + LIKD + + +G FV Y + AD +
Sbjct: 53 KLFVGSVPRTATEEIIRPLFEEHGNVIE-VALIKDKRT-GQQQGCCFVKYTTSEEADRAI 110
Query: 248 QKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ + N + G P + +AD + A + K L+V ++ S +++KE+F +
Sbjct: 111 RNLHNQHTLPGGVGPIQVRYADGE---RERLGAVEYK-LFVGSLNKQASEKEVKEIFSPY 166
Query: 307 GEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
G V V +M R GF+ Y+ R AL A+
Sbjct: 167 GVVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAI 200
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 128/275 (46%), Gaps = 46/275 (16%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++++ L + + L L P G+V ++ KD +G SKG+ FV + S A +A+
Sbjct: 304 AKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVI 363
Query: 167 ELHSKELKGKTIRCSLSET----------------------KNRLFIGNVPKNWTEDEFR 204
L+ + + G+ I +S + L++ N+P + + +
Sbjct: 364 HLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSI---DTK 420
Query: 205 KVIEDVGP--GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA-------NF 255
K++E P + ++ DP S +G+ F+ + ++ A + M A
Sbjct: 421 KLVELFLPFGKITHARVVADPDTFSA-KGYGFIKFTDSESATKAIAAMNGALVGGEMIIV 479
Query: 256 KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315
++ G +P+ S + ++T D + + LY+ N+P + + +K+ LF G++TKV+M
Sbjct: 480 RVAGLSPSASISAVQTTQDINKSR-----LYITNLPRSMTADKMVNLFAPFGQITKVLM- 533
Query: 316 PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
++ + YA+ SA+KAV+ + Y ++GK
Sbjct: 534 -----NLEYSLVWYADAPSAIKAVQHMDGYMVEGK 563
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 33/271 (12%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G LP L +L P G + R++ D +G S+G+ FV + A +AI
Sbjct: 209 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 268
Query: 167 ELHSKELKGKTIRCSLS--------------ET-KNRLFIGNVPKNWTEDEFRKVIEDVG 211
++ + ++G+ + ++ ET +L++ N+ + D + G
Sbjct: 269 RMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFG 328
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTPTISWADPK 270
V ++ KD ++G+ FV Y + ++ + +++ N +L DG + +
Sbjct: 329 E-VTNAKVAKD-HTTGLSKGYGFVQY---SSPHHAAEAVIHLNGRLVDGRKIEVRVSGIP 383
Query: 271 STPDHSAAAS----------QVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGK 318
ST +SA S + LYV N+P + T+K+ ELF G++T +VV P
Sbjct: 384 STLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDT 443
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ +GFI + + SA KA+ + G
Sbjct: 444 FSAKGYGFIKFTDSESATKAIAAMNGALVGG 474
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 111/264 (42%), Gaps = 37/264 (14%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++ +P + L +L P G + R++ D ++ +KG+ F+ F E A KAI
Sbjct: 406 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 465
Query: 167 ELHSKELKGKTI---------RCSLSET-------KNRLFIGNVPKNWTEDEFRKVIEDV 210
++ + G+ I S+S K+RL+I N+P++ T D+ +
Sbjct: 466 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 525
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
G + + N +S V Y + A + Q M + ++G + ++
Sbjct: 526 GQITKVL----------MNLEYSLVWYADAPSAIKAVQHM--DGYMVEGKRLVVKRSELC 573
Query: 271 STPDHSAAASQVK-----ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG 325
+T A +K LYV +P + + ++ +LF+ G V + M + +G
Sbjct: 574 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARM----FRFQRYG 629
Query: 326 FIHYAERSSALKAVKDTEKYEIDG 349
+ + S A A+ + Y+I G
Sbjct: 630 MVRFDNPSCAAAAIDHLDGYQIGG 653
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 49/276 (17%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N S ++I LP+ + + + +L P G + +V + + ++ V + A KA
Sbjct: 500 NKSRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--------YSLVWYADAPSAIKA 551
Query: 165 IDELHSKELKGKTIRCSLSE--TKN---------------RLFIGNVPKNWTEDEFRKVI 207
+ + ++GK + SE T N L++G VP + TED+F +
Sbjct: 552 VQHMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLF 611
Query: 208 EDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267
G V+ R + + V + N +CA + + +++ G+ + A
Sbjct: 612 RPFGRVVQARMF--------RFQRYGMVRFDNPSCAAAAIDHL--DGYQIGGSILAVRVA 661
Query: 268 D--PKSTPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVV 313
+S A SQ+ + LYV ++P + E++ +LF G++T KVV
Sbjct: 662 GLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVV 721
Query: 314 MPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ + FGF+ +A+ SA A+ Y +DG
Sbjct: 722 VERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDG 757
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++ LP + E L DL P G + + +++ ++ +G SKGF FV F A A+
Sbjct: 689 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 748
Query: 167 ELHSKELKGKTIRCSLS 183
++ L G + ++
Sbjct: 749 HMNGYPLDGHVLEVRIA 765
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 37/267 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
+ L GK + + +++ N ++ T+D+ +++ E G +IKD +
Sbjct: 160 NGMLLNGKKLFTN-------VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKD---DGK 209
Query: 229 NRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKSTPDHSAAAS--QVKA 284
+RGF FV + + D + Q +L N K +G + A K+ Q+K
Sbjct: 210 SRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKL 266
Query: 285 ----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAER 332
LYVKN+ D+ E++++ F G +T KV+M G+S + FGF+ ++
Sbjct: 267 ERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRS--KGFGFVCFSAP 324
Query: 333 SSALKAVKDTEKYEIDGKSHLHFPVFV 359
A KAV E++G+ + P++V
Sbjct: 325 EEATKAVT-----EMNGRIIVTKPLYV 346
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 122/255 (47%), Gaps = 42/255 (16%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQK---MLNANFKLDGNTPTISWADPKSTPDHSAA 278
Q+ S ++G+ FV + A+ S + ML KL N
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFTN------------------ 172
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMP-PGKSGKRDFGFIHYAERSSA 335
+YVKN ++ + +K+KE+F+++G +T KV++ GKS R FGF+ + + +A
Sbjct: 173 ------VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS--RGFGFVAFEDPDAA 224
Query: 336 LKAVKDTEKYEIDGK 350
+AV E++GK
Sbjct: 225 EQAV-----LELNGK 234
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 274 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMM--EEGRSKGFGFVCFSAPEEATKAV 331
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 332 TEMNGRIIVTKPLYVALAQRK 352
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 11/253 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 167 ELHSKELKGKTIRCSLSETKNRL---FIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 121
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 122 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + + +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 181 FTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 238
Query: 339 VKDTEKYEIDGKS 351
V++ E+ GK+
Sbjct: 239 VEEMNGKEMSGKA 251
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 130/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 92 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 149
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + +D +++ G +
Sbjct: 150 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTL 209
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 210 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EMSGKAIFVGRAQKKVERQ 264
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 265 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 323
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 324 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 356
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +++L++L G V++M+D SG+SKG
Sbjct: 165 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRD-PSGKSKG 223
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 224 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 283
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 284 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 331
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 284 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 341
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 342 TEMNGRIVGSKPLYVALAQRK 362
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 125/258 (48%), Gaps = 14/258 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 57 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 116
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + PK D +
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAA-HQAIKHVNGML-LNEKKVYVGHHIPKK--DRQS 232
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +Y+KNI S ++ +ELF+++G++T + + GK R FGF+++
Sbjct: 233 KFEEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTH 292
Query: 333 SSALKAVKDTEKYEIDGK 350
SA KAV++ + G+
Sbjct: 293 ESAAKAVEELHGKDFRGQ 310
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 83/155 (53%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + +AS+++ R+L E GD+ L +D+E G+S+GF
Sbjct: 227 KKDRQSKFEEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQE-GKSRGFG 285
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A KA++ELH K+ +G+ + ++ K+
Sbjct: 286 FVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 345
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +++ R++ + GP + + ++++D
Sbjct: 346 NLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 379
>gi|156400838|ref|XP_001638999.1| predicted protein [Nematostella vectensis]
gi|156226124|gb|EDO46936.1| predicted protein [Nematostella vectensis]
Length = 301
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 15/246 (6%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++ I GLP + +DL+ +F+ +KD G K A V F E A+ I
Sbjct: 40 KLVITGLPDNVDLQDLKS------KIFQGYDVKDLVIGHVKNTATVVFGGIEQARSVISF 93
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
L++ + KT+ S + ++ LF+GN+P +TE +F ++ G +E + L++ +
Sbjct: 94 LNTCKYHDKTLNVSPAPPESLLFVGNLPFEFTETQFGDLMSPYG-NIERLFLVRS-EVTG 151
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALY 286
++G+ FV Y A ++Q++LN K + G +++A+ + A + L+
Sbjct: 152 DSKGYGFVEYATRENAMQAKQQLLNTASKYIGGRILRVAFAESNLL---TYADVHSRTLF 208
Query: 287 VKNIP-DNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
V +P D + IKELF + G VT +V + P G R F F+ YA A K +
Sbjct: 209 VDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHN 268
Query: 344 KYEIDG 349
+++G
Sbjct: 269 GRQVEG 274
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 94 DKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV 153
DK + PP S +F+G LP + +E DL P G++ + L++ + +G+SKG+ FV
Sbjct: 101 DKTLNVSPAPPE-SLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFV 159
Query: 154 SFRSKEFAKKAIDEL---HSKELKGKTIRCSLSET---------KNRLFIGNVPKNWTED 201
+ ++E A +A +L SK + G+ +R + +E+ LF+ +P+++
Sbjct: 160 EYATRENAMQAKQQLLNTASKYIGGRILRVAFAESNLLTYADVHSRTLFVDRLPRDFKNG 219
Query: 202 EFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
K + V ++ +P N +RGF+FV Y A+ Q+ N +++G+
Sbjct: 220 GLIKELFSQTGNVTFAQVAINPANGG-SRGFAFVDYATAEEAEKG-QRAHNGR-QVEGSN 276
Query: 262 PTISWADPKST 272
+++ P T
Sbjct: 277 IRVAYGSPGRT 287
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 16/259 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E DL ++ +G V +R+ +B + +S +A+V+++ +E A+ A+D
Sbjct: 60 ASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALD 119
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
L ++KGK R S+ + + GNV KN D K + D I K
Sbjct: 120 TLAFCDIKGKQCRIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGKILSCKI 179
Query: 223 PQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN-----TPTISWADPKSTPDHS 276
+ ++GF FV Y + A+ ++ + N N L N P I D +S
Sbjct: 180 ATDEHGHSKGFGFVHYDD---AESAKAAIENVNGMLLNNMEVYVAPHIPRKDRES--KMQ 234
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335
+YVKN + ++++E+F+ +G+VT +P GK R FGF+++ + A
Sbjct: 235 EMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEA 294
Query: 336 LKAVKDTEKYEIDGKSHLH 354
KAV + E++G L+
Sbjct: 295 AKAVDALNEKELEGGRILY 313
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 37/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L D + L D G + ++ D E G SKGF FV + E AK AI+ +
Sbjct: 150 VFIKNLHPDIDNKTLYDTFSTFGKILSCKIATD-EHGHSKGFGFVHYDDAESAKAAIENV 208
Query: 169 HSKELKGKTIRCS--------------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + + + +++ N TED+ R++ E G V
Sbjct: 209 NGMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGK-V 267
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L D N + RGF FV + ++ A + LN G + A K +
Sbjct: 268 TSTYLPTD--NEGKARGFGFVNFEDHXEAAKAVDA-LNEKELEGGRILYVGRAQKKRERE 324
Query: 275 HSAAASQVKA------------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
S +A L+VKN+ D K+KE F +G++T + +GK
Sbjct: 325 ESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGKS 384
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R FGF+ Y + A +A+ + + + GK P++V
Sbjct: 385 RGFGFVCYTKPEEATRAINEMHQRMVMGK-----PLYV 417
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
KD+ +++ + N + V++ + +E+ LR++ E G V L D E G+++GF F
Sbjct: 227 KDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNE-GKARGFGF 285
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTE 200
V+F A KA+D L+ KEL+G I K R ++ K W +
Sbjct: 286 VNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREESLRKQWQQ 333
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L + L++ P G + ++M + ++G+S+GF FV + E A +AI
Sbjct: 344 GVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTN-DAGKSRGFGFVCYTKPEEATRAI 402
Query: 166 DELHSKELKGKTIRCSLSETK 186
+E+H + + GK + +L++ K
Sbjct: 403 NEMHQRMVMGKPLYVALAQRK 423
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 128/275 (46%), Gaps = 46/275 (16%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++++ L + + L L P G+V ++ KD +G SKG+ FV + S A +A+
Sbjct: 392 AKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVI 451
Query: 167 ELHSKELKGKTIRCSLSET----------------------KNRLFIGNVPKNWTEDEFR 204
L+ + + G+ I +S + L++ N+P + + +
Sbjct: 452 HLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSI---DTK 508
Query: 205 KVIEDVGP--GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA-------NF 255
K++E P + ++ DP S +G+ F+ + ++ A + M A
Sbjct: 509 KLVELFLPFGKITHARVVADPDTFSA-KGYGFIKFTDSESATKAIAAMNGALVGGEMIIV 567
Query: 256 KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315
++ G +P+ S + ++T D + + LY+ N+P + + +K+ LF G++TKV+M
Sbjct: 568 RVAGLSPSASISAVQTTQDINKSR-----LYITNLPRSMTADKMVNLFAPFGQITKVLM- 621
Query: 316 PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
++ + YA+ SA+KAV+ + Y ++GK
Sbjct: 622 -----NLEYSLVWYADAPSAIKAVQHMDGYMVEGK 651
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 33/271 (12%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G LP L +L P G + R++ D +G S+G+ FV + A +AI
Sbjct: 297 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 356
Query: 167 ELHSKELKGKTIRCSLS--------------ET-KNRLFIGNVPKNWTEDEFRKVIEDVG 211
++ + ++G+ + ++ ET +L++ N+ + D + G
Sbjct: 357 RMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFG 416
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTPTISWADPK 270
V ++ KD ++G+ FV Y + ++ + +++ N +L DG + +
Sbjct: 417 E-VTNAKVAKD-HTTGLSKGYGFVQY---SSPHHAAEAVIHLNGRLVDGRKIEVRVSGIP 471
Query: 271 STPDHSAAASQ----------VKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGK 318
ST +SA S + LYV N+P + T+K+ ELF G++T +VV P
Sbjct: 472 STLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDT 531
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ +GFI + + SA KA+ + G
Sbjct: 532 FSAKGYGFIKFTDSESATKAIAAMNGALVGG 562
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 111/264 (42%), Gaps = 37/264 (14%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++ +P + L +L P G + R++ D ++ +KG+ F+ F E A KAI
Sbjct: 494 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 553
Query: 167 ELHSKELKGKTI---------RCSLSET-------KNRLFIGNVPKNWTEDEFRKVIEDV 210
++ + G+ I S+S K+RL+I N+P++ T D+ +
Sbjct: 554 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 613
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
G + + N +S V Y + A + Q M + ++G + ++
Sbjct: 614 GQITKVL----------MNLEYSLVWYADAPSAIKAVQHM--DGYMVEGKRLVVKRSELC 661
Query: 271 STPDHSAAASQVK-----ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG 325
+T A +K LYV +P + + ++ +LF+ G V + M + +G
Sbjct: 662 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARM----FRFQRYG 717
Query: 326 FIHYAERSSALKAVKDTEKYEIDG 349
+ + S A A+ + Y+I G
Sbjct: 718 MVRFDNPSCAAAAIDHLDGYQIGG 741
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 49/276 (17%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N S ++I LP+ + + + +L P G + +V + + ++ V + A KA
Sbjct: 588 NKSRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--------YSLVWYADAPSAIKA 639
Query: 165 IDELHSKELKGKTIRCSLSE--TKN---------------RLFIGNVPKNWTEDEFRKVI 207
+ + ++GK + SE T N L++G VP + TED+F +
Sbjct: 640 VQHMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLF 699
Query: 208 EDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267
G V+ R + + V + N +CA + + +++ G+ + A
Sbjct: 700 RPFGRVVQARMF--------RFQRYGMVRFDNPSCAAAAIDHL--DGYQIGGSILAVRVA 749
Query: 268 D--PKSTPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVV 313
+S A SQ+ + LYV ++P + E++ +LF G++T KVV
Sbjct: 750 GLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVV 809
Query: 314 MPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ + FGF+ +A+ SA A+ Y +DG
Sbjct: 810 VERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDG 845
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++ LP + E L DL P G + + +++ ++ +G SKGF FV F A A+
Sbjct: 777 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 836
Query: 167 ELHSKELKGKTI 178
++ L G +
Sbjct: 837 HMNGYPLDGHVL 848
>gi|357603823|gb|EHJ63934.1| hypothetical protein KGM_17340 [Danaus plexippus]
Length = 438
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 11/217 (5%)
Query: 136 VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT-IRCSLSETKNRLFIGNV 194
+RLM D SG ++G+AFV + + A A+ +L+ E++ + I S RLF+GN+
Sbjct: 1 MRLMMD-FSGSNRGYAFVMYTERAEATAAVKQLNGYEIRPRRHIGVVKSVDNCRLFVGNI 59
Query: 195 PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254
PK T+++ R+ + + + L K+ + NRGF+FV + + A +R+ ++
Sbjct: 60 PKTKTKEDVREELSKRVSDIVDVILYKNCFDRKLNRGFAFVEFTCHRAAAMARRALVPGC 119
Query: 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR--HGEVTKV 312
+L + WA+P+ D +VK LYV+N T+ + I+++F+ + +V +V
Sbjct: 120 VRLWDQEVMVDWAEPEPDIDDE-QMQRVKVLYVRNFEIRTTPDVIQKVFESTINHKVERV 178
Query: 313 VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
D+ FIH+ ER A A+ + +IDG
Sbjct: 179 ------KKIYDYAFIHFYEREHAELAIAKLQNADIDG 209
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 123/253 (48%), Gaps = 14/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + +S G+A+V+F A++ +D
Sbjct: 12 TSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLD 71
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ LKGK IR S+ L IGNV KN + K + D I K
Sbjct: 72 TMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKV 131
Query: 223 P-QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
+ ++G+ FV + + A+ + +K+ L+G + P++ + +
Sbjct: 132 AIDDDGVSKGYGFVHFESIEAANKAIEKV--NGMLLNGKKVYVGKFIPRAEREKEIGEKS 189
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM---PPGKSGKRDFGFIHYAERSSAL 336
+ +YVKN N + E++ +LF+ +G +T V+ P G S + FGFI + E SA
Sbjct: 190 KKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTS--KGFGFIAFEEPESAE 247
Query: 337 KAVKDTEKYEIDG 349
KAV + YE++G
Sbjct: 248 KAVTEMNNYELNG 260
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 128/279 (45%), Gaps = 41/279 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + + D G++ ++ D + G SKG+ FV F S E A KAI+++
Sbjct: 102 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVAID-DDGVSKGYGFVHFESIEAANKAIEKV 160
Query: 169 HSKELKGKTIRCSL--------------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + S+ +++ N +N T+++ + ++ G +
Sbjct: 161 NGMLLNGKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGT-I 219
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--T 272
+ ++ +P S+ GF F+ + A+ + +M N++L+G + A KS
Sbjct: 220 TSCVVMANPDGTSK--GFGFIAFEEPESAEKAVTEM--NNYELNGTNLYVGRAQKKSERI 275
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K +Y+KN+ D +++++ F + G +T KV+ G+S
Sbjct: 276 KELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVMTEGGRS- 334
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ E+DG+ P++V
Sbjct: 335 -KGFGFVCFSTPEEASKAIT-----EMDGRMIGSKPIYV 367
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ V++ ++ ++E L DL + G + +M + + G SKGF F++F E A+KA+
Sbjct: 193 TNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPD-GTSKGFGFIAFEEPESAEKAVT 251
Query: 167 ELHSKELKGKTIRCSLSETK-------------------NRL-----FIGNVPKNWTEDE 202
E+++ EL G + ++ K NR+ +I N+ + D
Sbjct: 252 EMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDR 311
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
RK G I K R++GF FV +
Sbjct: 312 LRKEFSQFG----AITSAKVMTEGGRSKGFGFVCF 342
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ V+I L + LR G + ++M E G SKGF FV F + E A KAI
Sbjct: 295 GANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVMT--EGGRSKGFGFVCFSTPEEASKAI 352
Query: 166 DELHSKELKGKTIRCSLSE 184
E+ + + K I +L++
Sbjct: 353 TEMDGRMIGSKPIYVALAQ 371
>gi|326432018|gb|EGD77588.1| hypothetical protein PTSG_08685 [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+ I LP +E DLR+L +P G + +++M D+ + +S G+ FV F + E A +AI +
Sbjct: 86 LIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVEFETAEEAARAIQAM 145
Query: 169 HSKELKGKTIRCSL------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+ ++ K ++ S+ S T L+I N+P+ TED+ R + G + + L+ D
Sbjct: 146 NGRQYMNKRLKVSIARPSSSSITGANLYIKNLPRTITEDQLRAIFNPFG-EIISARLLYD 204
Query: 223 PQNPSRNRGFSFVLYYNNACAD 244
P +G +FV + ACA+
Sbjct: 205 GDVP---KGIAFVRFDKRACAE 223
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 20/163 (12%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E +N L I +P + TE + R++ + G ++ I+++ D + ++ G+ FV + A
Sbjct: 81 EPRNNLIINYLPPSVTESDLRELFKPFG-TIKAIKIMTD-RYTHKSLGYGFVEFETAEEA 138
Query: 244 DYSRQKM-----LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
+ Q M +N K +S A P S+ A LY+KN+P + ++
Sbjct: 139 ARAIQAMNGRQYMNKRLK-------VSIARPSSSSITGAN------LYIKNLPRTITEDQ 185
Query: 299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
++ +F GE+ + + F+ + +R+ A +AV +
Sbjct: 186 LRAIFNPFGEIISARLLYDGDVPKGIAFVRFDKRACAERAVAE 228
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 31/317 (9%)
Query: 44 EENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALP 103
E N E + G++ ++Q A A D + EE+ ++ V E
Sbjct: 5 ETNQLQESMEKLNIGSTSEEQPAAATTTADQS---AEEQGESSGVAE------------- 48
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
N + +++G L +E L ++ PIG V +R+ +D S +S G+A+V++ E +K
Sbjct: 49 -NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEK 107
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
AI+EL+ ++G+ R S+ + R GN+ KN K + D I
Sbjct: 108 AIEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILS 167
Query: 220 IKDPQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K + +++ F FV Y A+ + + N N L N + S D +
Sbjct: 168 CKVAADEFGQSKCFGFVHY---ETAEAAEAAIENVNGMLL-NDREVFVGKHISKKDRESK 223
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI N S E ++LF +G++T + + + GK + FGF+++
Sbjct: 224 FEEMKANFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHD 283
Query: 334 SALKAVKDTEKYEIDGK 350
SA+KAV++ EI+G+
Sbjct: 284 SAVKAVEELNDKEINGQ 300
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + SEE L P G + + L KD++ G+SKGF
Sbjct: 217 KKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQD-GKSKGFG 275
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F + + A KA++EL+ KE+ G+ I ++ K
Sbjct: 276 FVNFENHDSAVKAVEELNDKEINGQKIYVGRAQKK 310
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G+SK F FV + + E A+ AI+ +
Sbjct: 141 IFIKNLHPAIDNKALHDTFSAFGKILSCKVAAD-EFGQSKCFGFVHYETAEAAEAAIENV 199
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ N++E+ F K+ G +
Sbjct: 200 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFAPYGK-I 258
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV + N+ A + +++ + +++G + A K
Sbjct: 259 TSIYLEKD--QDGKSKGFGFVNFENHDSAVKAVEELNDK--EINGQKIYVGRAQKKRERL 314
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ A Q L+VKN+ D +EK++E F+ G +T + +GK
Sbjct: 315 EELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGKS 374
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ + A KA+ + I+GK P++V
Sbjct: 375 KGFGFVCFTTPEEATKAITEMNTRMINGK-----PLYV 407
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + + G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 334 GVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVD-DAGKSKGFGFVCFTTPEEATKAI 392
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++++ + GK + +L++ K
Sbjct: 393 TEMNTRMINGKPLYVALAQRK 413
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 121/260 (46%), Gaps = 28/260 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L +E L+D+ +G V EVR++KD+ +G S G AFV F + A A+ +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 169 HSKELKGKTIRCSLSETK---------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+ + L K +R + K + +F+GN+ + + + + +G +
Sbjct: 67 NGRILYNKEVRIQWAFQKEKTENTASHSHIFVGNLSGDVADPVLLQAFQHLGE-CSDARV 125
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-------- 271
+ D + R++GF FV + A+ + +M A ++ WA K+
Sbjct: 126 MWD-HSTGRSKGFGFVSFRTKEAAEKALAEMDGA--QVGQWKIRCGWAHHKTEAVTGLDI 182
Query: 272 -TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYA 330
T D + A+ +YV N+P E ++ F +GE+T + P K G +GF+ Y
Sbjct: 183 DTVDRADPANT--NVYVGNLPTEVMEEDLRAAFGAYGEITG-LKPCHKGG---YGFVTYR 236
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+ S+A++A+ E+ GK
Sbjct: 237 DHSAAVQAIVGMNGKELKGK 256
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +F+G L D ++ L + +G+ + R+M D +G SKGF FVSFR+KE A+KA+
Sbjct: 94 SHIFVGNLSGDVADPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAAEKALA 153
Query: 167 ELHSKELKGKTIRCSLSETK-------------------NRLFIGNVPKNWTEDEFRKVI 207
E+ ++ IRC + K +++GN+P E++ R
Sbjct: 154 EMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTVDRADPANTNVYVGNLPTEVMEEDLRAAF 213
Query: 208 EDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISW 266
G I +K P G+ FV Y +++ A Q ++ N K L G SW
Sbjct: 214 GAYGE----ITGLK----PCHKGGYGFVTYRDHSAA---VQAIVGMNGKELKGKMVKCSW 262
Query: 267 A 267
Sbjct: 263 G 263
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P + V++G LP + EEDLR G E+ +K G G+ FV++R A +
Sbjct: 190 PANTNVYVGNLPTEVMEEDLR---AAFGAYGEITGLKPCHKG---GYGFVTYRDHSAAVQ 243
Query: 164 AIDELHSKELKGKTIRCS 181
AI ++ KELKGK ++CS
Sbjct: 244 AIVGMNGKELKGKMVKCS 261
>gi|310798506|gb|EFQ33399.1| CC1-like family splicing factor [Glomerella graminicola M1.001]
Length = 565
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 37/226 (16%)
Query: 72 DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG 131
DDD P + + T + EDE+D+ VF+ L DL+ E +G
Sbjct: 156 DDDRPEASSKREATPQLTEDERDRRT-----------VFVQQLAARLRTRDLKAFFEKVG 204
Query: 132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----- 186
V E +++KD+ S SKG +V F++++ +A+ +L ++L G I ++E +
Sbjct: 205 PVTEAQIVKDRISQRSKGVGYVEFKNEDSVTQAL-QLTGQKLLGIPIIVQMTEAEKNRQV 263
Query: 187 ---------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
+RL++GN+ N TE + + V E G +E ++L KD + R+RG
Sbjct: 264 RTTETTAAHPNSIPFHRLYVGNIHFNVTEQDLQAVFEPFGE-LEFVQLQKD--DNGRSRG 320
Query: 232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+ FV Y + A + +KM F L G + + K TP+ +A
Sbjct: 321 YGFVQYREASQAREALEKM--NGFDLAGRPIRVGLGNDKFTPESTA 364
>gi|403285233|ref|XP_003933936.1| PREDICTED: dead end protein homolog 1 [Saimiri boliviensis
boliviensis]
Length = 353
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 4/168 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI LH+ L+ T+ S K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCTLLVCRSTEKCELSVDGLPPNLTRRALLLALQPLGPGLQEARLLP 172
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 173 SP-GPTPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEPVAVEWLKP 218
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 118/251 (47%), Gaps = 26/251 (10%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E KKAI+
Sbjct: 40 ASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAIE 99
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIED---VGPGVE 215
+L+ +KG+ R S+ +FI KN D K + D V +
Sbjct: 100 KLNYTPIKGRLCRIMWSQRDPALRKKGSANIFI----KNLHSDIDNKALYDTFSVFGNIL 155
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACA----DYSRQKMLNANFKLDGNTPTISWADPKS 271
+ ++ D +++GF FV + ++ A D +LN G P +S + S
Sbjct: 156 SSKIATD--ETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVG--PHLSRKERDS 211
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
+ S A +YVKNI T+ E+ ELF ++G+V + + GK + FGF+ +
Sbjct: 212 QLEESKA--NFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFE 269
Query: 331 ERSSALKAVKD 341
A KAV++
Sbjct: 270 NHEDAAKAVEE 280
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 132/288 (45%), Gaps = 41/288 (14%)
Query: 101 ALPPNGS-EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
AL GS +FI L D + L D G++ ++ D E+G+SKGF FV F
Sbjct: 121 ALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNILSSKIATD-ETGKSKGFGFVHFEDDT 179
Query: 160 FAKKAIDELHSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRK 205
AK+AID L+ L G+ I L E+K +++ N+ T++EF +
Sbjct: 180 AAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKANFTNIYVKNINLETTDEEFTE 239
Query: 206 VIEDVGPGVET-IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ G + +E +D + +GF FV + N+ A + +++ + FK +
Sbjct: 240 LFSKYGKVLSAALEKTED----GKLKGFGFVDFENHEDAAKAVEELNGSQFK--DQELFV 293
Query: 265 SWADPK------------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV 312
S A K ++ A Q L++KN+ D+ EK+KE F +G +T V
Sbjct: 294 SRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPYGNITSV 353
Query: 313 VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ ++GK R FGF+ ++ A KA+ + + + GK P++V
Sbjct: 354 RVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 396
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L++ P G++ VR+M+ E+G+S+GF FV F + E A KAI
Sbjct: 323 GVNLFIKNLDDSIDDEKLKEEFAPYGNITSVRVMRT-ENGKSRGFGFVCFSTPEEATKAI 381
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 382 TEKNQQIVAGKPLYVAIAQRKD 403
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ +QL N + +++ + + ++E+ +L G V L K E G+ KGF F
Sbjct: 207 KERDSQLEESKANFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKT-EDGKLKGFGF 265
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
V F + E A KA++EL+ + K + + S ++ K
Sbjct: 266 VDFENHEDAAKAVEELNGSQFKDQELFVSRAQKK 299
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 20/257 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +A+E L D G V +R+ +D + S G+A+V+F+ E A++AID
Sbjct: 11 ASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAID 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ ELKGK IR S+ L +GN+ KN + K++ D I K
Sbjct: 71 TMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDG---NTPTISWADPKS----TPD 274
N + ++G+ FV + A + A KLDG N + KS +
Sbjct: 131 NVNLAGESKGYGFVHFETEEAA-------VKAIEKLDGMLMNDKKVFVGRFKSRGERVRE 183
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
+ A Q +++KN+P K+ E+F HG V V + ++GK R FGF+ +
Sbjct: 184 YGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHE 243
Query: 334 SALKAVKDTEKYEIDGK 350
A K V+ E +GK
Sbjct: 244 CAEKVVEKLHDKEFEGK 260
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 124/284 (43%), Gaps = 47/284 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ ++ + +GESKG+ FV F ++E A KAI++L
Sbjct: 101 IFIKNLDKTIDNKMLYDTFSAFGNILSCKVNVNL-AGESKGYGFVHFETEEAAVKAIEKL 159
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ K + +++ +FI N+P W + + +V + G V
Sbjct: 160 DGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHG-SV 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
++ L D SR F FV + + CA+ +K+ + F +G + A K+
Sbjct: 219 MSVALATDENGKSRQ--FGFVSFETHECAEKVVEKLHDKEF--EGKKIFVGRAQKKA--- 271
Query: 275 HSAAASQVKA---------------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
A +VK LYVKN+ D+ + + ++E F +G +T KV+
Sbjct: 272 ERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTD 331
Query: 318 KSGKRD--FGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
G R FGF+ + A KAV E++G+ P++V
Sbjct: 332 VEGTRSKGFGFVCFTSAEEATKAVT-----EMNGRIIASKPLYV 370
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 25/155 (16%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VFI LP + + L ++ G V V L D E+G+S+ F FVSF + E A+K ++
Sbjct: 192 TNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATD-ENGKSRQFGFVSFETHECAEKVVE 250
Query: 167 ELHSKELKGKTIRCSLSETKN------------------------RLFIGNVPKNWTEDE 202
+LH KE +GK I ++ K L++ N+ + T+D
Sbjct: 251 KLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDI 310
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
R+ G + + +R++GF FV +
Sbjct: 311 LREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCF 345
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK--ESGESKGFAFVSFRSKEFAKK 163
G +++ L +++ LR+ P G++ ++M D E SKGF FV F S E A K
Sbjct: 294 GVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATK 353
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
A+ E++ + + K + +L++ K+
Sbjct: 354 AVTEMNGRIIASKPLYVALAQRKD 377
>gi|380478594|emb|CCF43506.1| CC1-like family splicing factor [Colletotrichum higginsianum]
Length = 565
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 37/226 (16%)
Query: 72 DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG 131
DDD P + + T + EDE+D+ VF+ L DL+ E +G
Sbjct: 156 DDDRPETSSKREATPQLTEDERDRRT-----------VFVQQLAARLRTRDLKAFFEKVG 204
Query: 132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----- 186
V E +++KD+ S SKG +V F++++ +A+ +L ++L G I ++E +
Sbjct: 205 PVTEAQIVKDRISQRSKGVGYVEFKNEDSVTQAL-QLTGQKLLGIPIIVQMTEAEKNRQV 263
Query: 187 ---------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
+RL++GN+ N TE + + V E G +E ++L KD + R+RG
Sbjct: 264 RTTETTSAHPNSIPFHRLYVGNIHFNVTEQDLQAVFEPFGE-LEFVQLQKD--DNGRSRG 320
Query: 232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+ FV Y + A + +KM F L G + + K TP+ +A
Sbjct: 321 YGFVQYREASQAREALEKM--NGFDLAGRPIRVGLGNDKFTPESTA 364
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN----NA 241
+ +F+ + + + E VGP V +++KD + R++G +V + N
Sbjct: 179 RRTVFVQQLAARLRTRDLKAFFEKVGP-VTEAQIVKD-RISQRSKGVGYVEFKNEDSVTQ 236
Query: 242 CADYSRQKMLN---------ANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPD 292
+ QK+L A T + A P S P H LYV NI
Sbjct: 237 ALQLTGQKLLGIPIIVQMTEAEKNRQVRTTETTSAHPNSIPFHR--------LYVGNIHF 288
Query: 293 NTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
N + + ++ +F+ GE+ V + +G+ R +GF+ Y E S A +A++ +++ G+
Sbjct: 289 NVTEQDLQAVFEPFGELEFVQLQKDDNGRSRGYGFVQYREASQAREALEKMNGFDLAGR 347
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FV+F E A+KA+ ++ KE+ G+ + ++ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 20/261 (7%)
Query: 102 LPPNGS--EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
+PP+ S +++G L +D +E L ++ +G V +R+ +D + +S G+A+V++ +
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 160 FAKKAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVG 211
A++A+D L+ +KG+ R S +F+ N+ K G
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFG 128
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
+ + ++ D S+N G FV Y + A + +K+ +L + KS
Sbjct: 129 -NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKV--NGMQLGSKNVYVGHFIKKS 183
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE 331
+ + ++ LYVKN PD + +KELF +GE+T +++ + R F FI+Y++
Sbjct: 184 --ERATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIV-KSDNKNRKFCFINYSD 240
Query: 332 RSSALKAVKDTEKYEI--DGK 350
SA A+++ +I DGK
Sbjct: 241 ADSARNAMENLNGKKITEDGK 261
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L ++ L++L EP G + ++MKD + +SKGF FV F + E A KA+
Sbjct: 399 GVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEANKAV 457
Query: 166 DELHSKELKGKTIRCSLSETK 186
E+H K + GK + L+E +
Sbjct: 458 TEMHLKIINGKPLYVGLAEKR 478
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 9/164 (5%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++G++ ++ TE ++ VG V +I + +D ++ G+++V Y+N A A+ +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGH-VLSIRVCRDSV-TRKSLGYAYVNYHNLADAERALD 75
Query: 249 KMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ N K G + W S D S S ++VKN+ + + + F G
Sbjct: 76 TLNYTNIK--GQPARLMW----SHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGN 129
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ + + GK +++GF+HY + SA +A++ ++ K+
Sbjct: 130 ILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKN 173
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LY+KN+ D+ + +KELF+ +G +T VM K + FGF+ + A KAV +
Sbjct: 402 LYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 461
Query: 344 KYEIDGKSHLHFPVFV 359
I+GK P++V
Sbjct: 462 LKIINGK-----PLYV 472
>gi|148905888|gb|ABR16106.1| unknown [Picea sitchensis]
Length = 409
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 26/206 (12%)
Query: 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172
G+P D E L+D G++ +V +M+D+ +G S+GF + +F S E AKKA+D H
Sbjct: 12 GIPWDVDTEGLQDYMGKFGELDDVIVMRDRATGRSRGFGYATFSSVEDAKKALDSEHF-- 69
Query: 173 LKGKTIRCSLSETK----------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L G+ + ++ K R+F+ +P + TED FRK E+ G +E + + K+
Sbjct: 70 LNGRALEVKVATPKEEMKAPSKKITRIFVARIPPSVTEDAFRKYFEEFG-NIEDLYMPKE 128
Query: 223 PQNPSRNRGFSFVLYYNNACAD--YSRQKML-NANFKLDGNTP----TISWADPKSTP-- 273
+ +RG F+ + ++ D S ML A +D TP T WA P S
Sbjct: 129 -KGSKGHRGIGFITFESSGSVDRLMSETHMLGGATIAVDRATPKEESTKQWAKPVSGGYG 187
Query: 274 ---DHSAAASQVKALYVKNIPDNTST 296
+ AA++ AL + D+ S+
Sbjct: 188 AYNAYINAATRYGALGSATLYDHPSS 213
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 90/237 (37%), Gaps = 21/237 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +F+ +P +E+ R E G++ ++ + K+K S +G F++F S + +
Sbjct: 94 TRIFVARIPPSVTEDAFRKYFEEFGNIEDLYMPKEKGSKGHRGIGFITFESSGSVDRLMS 153
Query: 167 ELHSKELKGKTI---RCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDVGPGVETIELIKD 222
E H L G TI R + E + + V + + + G + + L
Sbjct: 154 ETH--MLGGATIAVDRATPKEESTKQWAKPVSGGYGAYNAYINAATRYGA-LGSATLYDH 210
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKML---NANFKLDGNTPTISWADPKSTPDHSAAA 279
P + R+ Y + Y A + G++ ++ P +
Sbjct: 211 PSSGFRDG------YASEVGGGYGSGNSWPPHGAGGMIGGSSYGMADRGAGYGPGSFSGP 264
Query: 280 ---SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAE 331
K ++V + + ++ F G V V +P +SG R FGF+ +AE
Sbjct: 265 PPRGMGKKIFVGRLSQEATAGDLRRYFSNFGTVVDVYVPKDARRSGHRGFGFVTFAE 321
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
R+RGF + + + A +K L++ L+G + A PK + A + ++ ++
Sbjct: 44 GRSRGFGYATFSSVEDA----KKALDSEHFLNGRALEVKVATPKE--EMKAPSKKITRIF 97
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTE 343
V IP + + + ++ F+ G + + MP G G R GFI + S + + +T
Sbjct: 98 VARIPPSVTEDAFRKYFEEFGNIEDLYMPKEKGSKGHRGIGFITFESSGSVDRLMSETH 156
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 103 PPNG--SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
PP G ++F+G L ++A+ DLR G V +V + KD +GF FV+F
Sbjct: 265 PPRGMGKKIFVGRLSQEATAGDLRRYFSNFGTVVDVYVPKDARRSGHRGFGFVTFAEDGV 324
Query: 161 AKKAIDELHSKELKGKTI 178
A + H E+ G+ +
Sbjct: 325 ADRVSRRSH--EILGQQV 340
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 124/256 (48%), Gaps = 14/256 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 45 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 104
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 105 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 164
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 165 KVAQDEHGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 220
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + + ++ ++LF++HG++T + GK R FGF++Y + +
Sbjct: 221 EEMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEA 280
Query: 335 ALKAVKDTEKYEIDGK 350
A AV+ E G+
Sbjct: 281 ASVAVETLNDTEFHGQ 296
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 137 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETAEAANNAIKHV 195
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ + T+DEFR + E G +
Sbjct: 196 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDDEFRDLFEKHG-DI 254
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+ + +D Q ++RGF FV Y + A + + + + F G + A K
Sbjct: 255 TSASIARDDQ--GKSRGFGFVNYIKHEAASVAVETLNDTEFH--GQKLYVGRAQKKHERE 310
Query: 272 ---TPDHSAAASQVKA------LYVKNIPDNTSTEKIKELFQRHGEVT 310
+ AA + ++ LY+KN+ D+ EK++++F G +T
Sbjct: 311 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTIT 358
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F + + A KA+ E++ K L+GK + +L++ K+
Sbjct: 424 GKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRKD 466
>gi|356565014|ref|XP_003550740.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 733
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 96/177 (54%), Gaps = 17/177 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +P+ ASEED+R L E G+V EV L+KDK++G+ +G F+ + + E A +AI
Sbjct: 86 AKLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIR 145
Query: 167 ELHSKE-LKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
LH++ L G +R + L + +LF+G++ K T E ++ G VE
Sbjct: 146 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYG-RVE 204
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTPTI-SWADPK 270
+ L++D + SR GF + + A A + LN + + G P I +ADPK
Sbjct: 205 DVYLMRDEKKQSRGCGFVKYSHRDMALAAIN---ALNGIYTMRGCEQPLIVRFADPK 258
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G+VP+ +E++ R + E+ G +E + LIKD + +++G F+ Y + AD +
Sbjct: 87 KLFVGSVPRTASEEDIRPLFEEHGNVIE-VALIKDKKT-GQHQGCCFIKYATSEEADQAI 144
Query: 248 QKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ + N + G P + +AD + A + K L+V ++ + ++++E+F ++
Sbjct: 145 RALHNQHTLPGGVGPIQVRYADGE---RERLGAVEYK-LFVGSLNKQATVKEVEEIFSKY 200
Query: 307 GEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
G V V +M K R GF+ Y+ R AL A+
Sbjct: 201 GRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAI 234
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 131/277 (47%), Gaps = 38/277 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ ++ D SG+SKG+ FV + S E A+KAI++L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSDEAAQKAIEKL 175
Query: 169 HSKELKGKTIRCS---------LSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L K + ++ K R +F+ N+ ++ E+E RK+ + G + +
Sbjct: 176 NGMLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGT-ITS 234
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
+ ++KD ++R F FV + N D +R +KLD + A KS
Sbjct: 235 VAVMKD--EDGKSRCFGFVNFEN--AEDAARAVEALNGYKLDNKDWFVGRAQKKSEREME 290
Query: 272 -------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKR 322
+ + SQ LY+KN+ D+ S +K+KELF +G +T KV+ P K
Sbjct: 291 LKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKG 350
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
GF+ ++ A +A+ E++GK + P++V
Sbjct: 351 S-GFVAFSTPEEASRALS-----EMNGKMVVSKPLYV 381
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L S++ L++L P G + ++M+D SG SKG FV+F + E A +A+
Sbjct: 308 GLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDP-SGVSKGSGFVAFSTPEEASRAL 366
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + K + +L++ K
Sbjct: 367 SEMNGKMVVSKPLYVALAQRK 387
>gi|50417808|gb|AAH78132.1| LOC398713 protein, partial [Xenopus laevis]
Length = 379
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +GSEVFIG +P+D E+ L L + +G ++E RLM SG ++GFA+ + S+ A
Sbjct: 81 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMT-FSGLNRGFAYARYISRRQAI 139
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L+ E+ KG I S K+ L + +P N+ E+ + V+++V GV +I L
Sbjct: 140 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHP 199
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
P S+ + V Y ++ A +++ + + L G T++W
Sbjct: 200 SPTKESQV--LAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 242
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 125/268 (46%), Gaps = 29/268 (10%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E DL + PIG V +R+ +D + S G+ +V+F S+ ++A++
Sbjct: 52 ASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALE 111
Query: 167 ELHSKELKGKTIRCSLSETK----------NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
EL+ E+KG +RC L ++ +FI N+ G V +
Sbjct: 112 ELNYAEIKG--VRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFG-KVLS 168
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQK----MLNANFKLDGNTPTISWADPKST 272
++ D S +GF FV Y ++ A + + +LN G P ++ D +S
Sbjct: 169 CKVATDENGNS--KGFGFVHYESDEAAQAAIENINGMLLNGREIYVG--PHLAKKDRESR 224
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAE 331
++VKN ++ ++++ELF+ +G +T + + G + FGF+++AE
Sbjct: 225 --FQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAE 282
Query: 332 RSSALKAVKDTEKYEIDGKSHLHFPVFV 359
A+KAV+ E GK P++V
Sbjct: 283 HDDAVKAVEALNDKEYKGK-----PLYV 305
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G V ++ D E+G SKGF FV + S E A+ AI+ +
Sbjct: 142 IFIKNLDPAIENKTLHDTFSSFGKVLSCKVATD-ENGNSKGFGFVHYESDEAAQAAIENI 200
Query: 169 HSKELKGKTIRCS--------------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + + +F+ N TEDE R++ E GP +
Sbjct: 201 NGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGP-I 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+I L D + N+GF FV + + A + + + + +K G + A K+
Sbjct: 260 TSIHLQVDSE--GHNKGFGFVNFAEHDDAVKAVEALNDKEYK--GKPLYVGRAQKKNERV 315
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H Q L++KN+ ++ +++E F+ G +T + ++GK
Sbjct: 316 HELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R FGF+ + A KA+ + + + K P++V
Sbjct: 376 RGFGFVCLSTPEEATKAISEMNQRMVANK-----PLYV 408
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 33/218 (15%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + VF+ +++E++LR+L E G + + L D E G +KGF
Sbjct: 218 KKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSE-GHNKGFG 276
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + A KA++ L+ KE KGK + ++ KN
Sbjct: 277 FVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSV 336
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
LFI N+ ++ + + + G + + +++ D ++RGF FV + + +
Sbjct: 337 NLFIKNLDESIDDARLEEEFKPFG-TITSAKVMLDEN--GKSRGFGFVCL---STPEEAT 390
Query: 248 QKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKA 284
+ + N ++ N P ++ A PK+ S A Q++A
Sbjct: 391 KAISEMNQRMVANKPLYVALAQPKAI-RRSQLAQQIQA 427
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 126/263 (47%), Gaps = 20/263 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK+IR S+ L IGNV KN + K + + I K
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKILSSKV 129
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP-KSTPDHSA---- 277
+ + +RG++FV + + AD + + M A K + P K+ D A
Sbjct: 130 MSDDAGSRGYAFVHFQSQTAADRAIEAMNGALLK-----GCRLFVGPFKNRKDRQAELQN 184
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSAL 336
A++ +Y+KN D+ E++KE+F G++ V VM + + FGF+ + +A
Sbjct: 185 KANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQ 244
Query: 337 KAVKDTEKYEIDGKSHLHFPVFV 359
+AV+ ++ G+ P+FV
Sbjct: 245 RAVEIMNGKDLSGQ-----PLFV 262
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 121/271 (44%), Gaps = 37/271 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D ++G S+G+AFV F+S+ A +AI+ +
Sbjct: 100 VFIKNLHKSIDNKTLYEHFSAFGKILSSKVMSD-DAG-SRGYAFVHFQSQTAADRAIEAM 157
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LKG R + KNR ++I N + ++ +++ G
Sbjct: 158 NGALLKG--CRLFVGPFKNRKDRQAELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGK 215
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS- 271
+ +++++ D + R++GF FV + ++ A + + M + L G + A K+
Sbjct: 216 -ILSVKVMTDSRG--RSKGFGFVSFDSHEAAQRAVEIMNGKD--LSGQPLFVGRAQKKAE 270
Query: 272 -TPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ Q+K LY+KN+ D+ E+++ F G +++V + +
Sbjct: 271 RQAELKLMFEQMKQERYRRFRGVKLYIKNLDDSIDDERLRREFSSFGSISRVKVMKEEGR 330
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ FG I ++ A KA+ + + KS
Sbjct: 331 SKGFGLICFSSPEEATKAMVEMNGRILGSKS 361
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + V+I D +E L+++ G + V++M D G SKG
Sbjct: 173 KNRKDRQAELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSR-GRSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVSF S E A++A++ ++ K+L G+ + ++ K
Sbjct: 232 FGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRFR 291
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ + ++ R+ G +I +K + R++GF + +
Sbjct: 292 GVKLYIKNLDDSIDDERLRREFSSFG----SISRVKVMKEEGRSKGFGLICF 339
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR G + V++MK E G SKGF + F S E A KA+
Sbjct: 292 GVKLYIKNLDDSIDDERLRREFSSFGSISRVKVMK--EEGRSKGFGLICFSSPEEATKAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K++ +L++
Sbjct: 350 VEMNGRILGSKSLNIALAQ 368
>gi|405963038|gb|EKC28647.1| CUG-BP- and ETR-3-like factor 2 [Crassostrea gigas]
Length = 647
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 18/158 (11%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +P+ E DLR + E G V+++ +++DK +G+SKG FV+F +++ A
Sbjct: 63 PDAIKMFVGQIPRSMDENDLRKMFEEFGAVYQLNVLRDKATGQSKGCCFVTFYTRKAALD 122
Query: 164 AIDELHS-KELKGK----TIRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A + LH+ K + G ++ + SE +N +LF+G + K +E + + + G +E
Sbjct: 123 AQNALHNIKTMSGMHHPIQMKPADSEKRNEERKLFVGMISKKCSESDVKMMFAPFGS-IE 181
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253
+++D QN ++RG +FV Y N RQ LNA
Sbjct: 182 DCTILRD-QN-GQSRGCAFVTYAN-------RQSALNA 210
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
++F+G +P++ E++ RK+ E+ G V + +++D + +++G FV + Y+R
Sbjct: 67 KMFVGQIPRSMDENDLRKMFEEFG-AVYQLNVLRD-KATGQSKGCCFVTF-------YTR 117
Query: 248 QKMLNANFKLDGNTPTISWAD--PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ L+A L N T+S + P S ++ + L+V I S +K +F
Sbjct: 118 KAALDAQNALH-NIKTMSGMHHPIQMKPADSEKRNEERKLFVGMISKKCSESDVKMMFAP 176
Query: 306 HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
G + + ++G+ R F+ YA R SAL A+K+
Sbjct: 177 FGSIEDCTILRDQNGQSRGCAFVTYANRQSALNAIKN 213
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+G+ +FI LP++ S++DL P G V ++ DK++ SK F FVS+ + A+
Sbjct: 559 PDGANLFIYHLPQEFSDQDLMQTFIPFGTVISAKVFIDKQTNLSKCFGFVSYDNALSAQA 618
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 619 AIQAMNGFQIGMKRLKVQLKRPKS 642
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G + K SE D++ + P G + + +++D ++G+S+G AFV++ +++ A AI
Sbjct: 155 KLFVGMISKKCSESDVKMMFAPFGSIEDCTILRD-QNGQSRGCAFVTYANRQSALNAIKN 213
Query: 168 L-HSKELKG 175
+ HS+ ++G
Sbjct: 214 MHHSQTMEG 222
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V + + +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKVIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|269859758|ref|XP_002649603.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
gi|220066966|gb|EED44435.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
Length = 484
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 134/257 (52%), Gaps = 24/257 (9%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+ +G + + + +L+++ + + +V + +MK +G+ FAFV F S A++A+ +
Sbjct: 23 IHVGDISLNTTANELKEVFKGL-NVTNI-IMKKTLNGQY-AFAFVKFDSANAAQEAVQKY 79
Query: 169 HSKELKGKTIRCSLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+ L GK I ++S+T+ + +F+ N+P + + + ++ ++ GP V + ++ +
Sbjct: 80 NYTMLNGKEILLTISDTQFKYSQSANIFVNNIPTDMSAKDLEEIFKNFGP-VLSCKISRT 138
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNA-NFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S+ G+ +V+Y N A ++ + N N K++ N + + +P+ SA S+
Sbjct: 139 SEGKSK--GYGYVMYKNLKSA---KKAVTNCQNVKINENILFVDFYNPQK----SARNSE 189
Query: 282 VKAL---YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
KA + KN P N + ++K L +++GE+T + P GK F ++YA SA++
Sbjct: 190 NKAFTNCFCKNFPPNYTEAELKNLLKKYGEITTIYFPTKSDGKPVGFACVNYAHPESAVR 249
Query: 338 AVKDTEKYEIDGKSHLH 354
A+ + +I + +
Sbjct: 250 AIDELHNKQIFNNNQMQ 266
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 124/277 (44%), Gaps = 38/277 (13%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +F+ +P D S +DL ++ + G V ++ + E G+SKG+ +V +++ + AKKA+
Sbjct: 103 SANIFVNNIPTDMSAKDLEEIFKNFGPVLSCKISRTSE-GKSKGYGYVMYKNLKSAKKAV 161
Query: 166 DELHSKELK-----------GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ ++ K+ R S ++ F N P N+TE E + +++ G
Sbjct: 162 TNCQNVKINENILFVDFYNPQKSARNSENKAFTNCFCKNFPPNYTEAELKNLLKKYG--- 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYN-----NACADYSRQKMLNANFKLDGNT-----PTI 264
E + ++ + GF+ V Y + A + +++ N N ++ +T P
Sbjct: 219 EITTIYFPTKSDGKPVGFACVNYAHPESAVRAIDELHNKQIFNNN-QMQKDTKFAIEPFY 277
Query: 265 SWADPKSTPDHSAAASQV-----------KALYVKNIPDNTSTEKIKELFQRHGEVTKVV 313
+ K S + L+++N+P + S +++ E+ ++ G +T
Sbjct: 278 IQKNEKKKEREQILKSFYGNSVGFRNKLKRNLFIQNVPTSFSEDELLEILKKFGNITDFK 337
Query: 314 MPPGKSG-KRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ ++ FG++ Y+ A A++ +++ +DG
Sbjct: 338 LKLDTLHPEKQFGYVCYSTIEEAAVALEKSKQVLLDG 374
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 42/213 (19%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ F P + +E +L++L + G++ + K G+ GFA V++ E A +AID
Sbjct: 194 TNCFCKNFPPNYTEAELKNLLKKYGEITTIYF-PTKSDGKPVGFACVNYAHPESAVRAID 252
Query: 167 ELHSKEL-----KGKTIRCSL-----------------------------SETKNRLFIG 192
ELH+K++ K + ++ ++ K LFI
Sbjct: 253 ELHNKQIFNNNQMQKDTKFAIEPFYIQKNEKKKEREQILKSFYGNSVGFRNKLKRNLFIQ 312
Query: 193 NVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252
NVP +++EDE ++++ G + +L D +P + G+ A + K +
Sbjct: 313 NVPTSFSEDELLEILKKFG-NITDFKLKLDTLHPEKQFGYVCYSTIEEAAVALEKSKQV- 370
Query: 253 ANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
LDGN +S KS + S +S + L
Sbjct: 371 ---LLDGNQLELSIY--KSKYERSTESSYIMKL 398
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
N + +G++ N T +E ++V + G V I ++K N F+FV + + A +
Sbjct: 21 NVIHVGDISLNTTANELKEVFK--GLNVTNI-IMKKTLNGQY--AFAFVKFDSANAAQEA 75
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
QK N+ L+G ++ +D + SA ++V NIP + S + ++E+F+
Sbjct: 76 VQKY---NYTMLNGKEILLTISDTQFKYSQSAN------IFVNNIPTDMSAKDLEEIFKN 126
Query: 306 HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEID 348
G V + GK + +G++ Y SA KAV + + +I+
Sbjct: 127 FGPVLSCKISRTSEGKSKGYGYVMYKNLKSAKKAVTNCQNVKIN 170
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 19/260 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 175 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 230
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 288
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+ +A AV+ +YE+ G+
Sbjct: 289 DHEAASAAVEGLNEYELKGQ 308
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +D ++E+ R L E G++ L +D E+G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F E A A++ L+ ELKG+ +L++G K E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEGLNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE 330
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
K G+SKGF FV F + + A KA+ E++ + + GK + +L++ K+
Sbjct: 439 KHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKD 484
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 124/257 (48%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK IR S+ L FI N+ K+ + G + + +
Sbjct: 169 TMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 227
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q +RG++FV + N AD + ++M A K + K+ D A
Sbjct: 228 VMSDDQG---SRGYAFVHFQNQNAADRAIEEMNGALLK----DCRLFVGRFKNRKDREAE 280
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++ +YVKN D+ E++KE+F ++G+ V + GK + FGF+ +
Sbjct: 281 LQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHE 340
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +++G+
Sbjct: 341 AAKKAVEEMNGKDVNGQ 357
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + V++ D +E L+++ G V++M D G+SKG
Sbjct: 272 KNRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SGGKSKG 330
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
F FVSF S E AKKA++E++ K++ G+ + ++ K+
Sbjct: 331 FGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKS 368
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 121/279 (43%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + S+G+AFV F+++ A +AI+E+
Sbjct: 199 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQNAADRAIEEM 256
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + KNR +++ N + ++ ++V G
Sbjct: 257 NGALLK--DCRLFVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGK 314
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS- 271
+ +++++ D + +++GF FV + ++ A + ++M + ++G + A KS
Sbjct: 315 TL-SVKVMTD--SGGKSKGFGFVSFDSHEAAKKAVEEMNGKD--VNGQLLFVGRAQKKSE 369
Query: 272 -----------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
Q LY+KN+ D EK+ F G +++V + +
Sbjct: 370 RQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEGR 429
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FG I ++ A KA+ E++G+ P+++
Sbjct: 430 SKGFGLICFSSPEEATKAMA-----EMNGRILGSKPLYI 463
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 121/253 (47%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + + A
Sbjct: 131 ACDKHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRRERAAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V + SG+ R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-NSGRSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FV+F E A+KA+ ++ KE+ G+ + S ++ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKR 269
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 122/278 (43%), Gaps = 40/278 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ DK S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTI--------RCSLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + R +E R +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFG-KM 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D N R+R F FV + + + +++ +++ N K + G S A +
Sbjct: 218 LSVKVMRD--NSGRSRCFGFVNFEKH---EEAQKAVVHMNGKEVSGRLLYASRAQKRVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q LYVKN+ D+ +K+++ F +G +T + S
Sbjct: 273 QNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGSHS 332
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 KGFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGSHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 7/251 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E ++ELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGKS 351
+ E+ GKS
Sbjct: 250 EMNGKEMSGKS 260
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+LR+L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK+I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D +++GF FV Y + A+ + ++M N K + G + + A K
Sbjct: 219 -SVKVMRDCSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEMSGKSIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + ++ELF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L++L G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 113/290 (38%), Gaps = 64/290 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E +++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFG-KM 217
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
VM G K FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|34327791|gb|AAQ63637.1| dead end protein [Xenopus laevis]
Length = 354
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +GSEVFIG +P+D E+ L L + +G ++E RLM SG ++GFA+ + S+ A
Sbjct: 56 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMT-FSGLNRGFAYARYISRRQAI 114
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L+ E+ KG I S K+ L + +P N+ E+ + V+++V GV +I L
Sbjct: 115 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHP 174
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
P S+ + V Y ++ A +++ + + L G T++W
Sbjct: 175 SPTKESQV--LAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 217
>gi|66802807|ref|XP_635247.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60463542|gb|EAL61727.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 489
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 103/172 (59%), Gaps = 15/172 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +PK +EE++++L I ++ V L+K+K + E +G AFVS S+E A +AI+
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 167 ELH-SKELKGKT----IRCSLSE---TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+LH SK+ +G ++ + SE ++LF+G +P+++ E++ R++ E G VE I
Sbjct: 63 QLHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGV-VEDIC 121
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWAD 268
+++ P + S+ GF + ++N + S LN KLDG N + +AD
Sbjct: 122 ILRGPNSESKGCGF---IKFDNRESALSAIATLNG-MKLDGSPNPLVVKFAD 169
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P GS +F+ +P S+ DL L + G V ++ DK +G SKGF FVS+ + A
Sbjct: 400 PQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANL 459
Query: 164 AIDELHSKELKGKTIRCSLSET 185
AI LH + + GK ++ SL +T
Sbjct: 460 AISNLHGQMMAGKKLKVSLKQT 481
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G +PK++ E+E + + ++ +E++ LIK+ + + +G +FV + AD +
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIA-NIESVSLIKN-KTTNEPQGCAFVSVPSREEADRAI 61
Query: 248 QKMLNANFKLDG--NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+++ N+ K G N + +AD + AS+ L+V +P + E+I+ELF+
Sbjct: 62 EQLHNSK-KFQGVLNNLQVKYADS----EQEKLASK---LFVGMLPRSYEEEQIRELFEP 113
Query: 306 HGEVTKVVMPPG-KSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
HG V + + G S + GFI + R SAL A+ ++DG
Sbjct: 114 HGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDG 158
>gi|62529296|gb|AAX84947.1| dead end [Xenopus laevis]
Length = 354
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +GSEVFIG +P+D E+ L L + +G ++E RLM SG ++GFA+ + S+ A
Sbjct: 56 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMT-FSGLNRGFAYARYISRRQAI 114
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L+ E+ KG I S K+ L + +P N+ E+ + V+++V GV +I L
Sbjct: 115 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHP 174
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
P S+ + V Y ++ A +++ + + L G T++W
Sbjct: 175 SPTKESQV--LAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 217
>gi|60389570|sp|Q6DCB7.2|DND1_XENLA RecName: Full=Dead end protein homolog 1
Length = 371
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +GSEVFIG +P+D E+ L L + +G ++E RLM SG ++GFA+ + S+ A
Sbjct: 73 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMT-FSGLNRGFAYARYISRRQAI 131
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L+ E+ KG I S K+ L + +P N+ E+ + V+++V GV +I L
Sbjct: 132 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHP 191
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
P S+ + V Y ++ A +++ + + L G T++W
Sbjct: 192 SPTKESQV--LAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 234
>gi|356521753|ref|XP_003529516.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 737
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 17/179 (9%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N +++F+G +P+ A+EED+R L E G+V EV L+KDK++G+ +G F+ + + E A +A
Sbjct: 84 NFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQA 143
Query: 165 IDELHSKE-LKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
I LH++ L G +R + L + +LF+G++ K T E ++ G
Sbjct: 144 IRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYG-R 202
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPK 270
VE + L++D + SR GF + + A A + LN + + G + +ADPK
Sbjct: 203 VEDVYLMRDEKKQSRGCGFVKYSHRDMALAAIN---ALNGIYTMRGCEQPLIVRFADPK 258
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G+VP+ TE++ R + E+ G +E + LIKD + +++G F+ Y + AD +
Sbjct: 87 KLFVGSVPRTATEEDIRPLFEEHGNVIE-VALIKDKKT-GQHQGCCFIKYATSEEADQAI 144
Query: 248 QKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ + N + G P + +AD + A + K L+V ++ + ++++E+F ++
Sbjct: 145 RALHNQHTLPGGVGPIQVRYADGE---RERLGAVEYK-LFVGSLNKQATVKEVEEIFSKY 200
Query: 307 GEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
G V V +M K R GF+ Y+ R AL A+
Sbjct: 201 GRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAI 234
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 7/251 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E ++ELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGKS 351
+ E+ GKS
Sbjct: 250 EMNGKEMSGKS 260
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+LR+L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK+I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D +++GF FV Y + A+ + ++M N K + G + + A K
Sbjct: 219 -SVKVMRDCSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEMSGKSIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 21/245 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L + +E L +L + V +R+ +D+ +S G+A+V+F S + A A++
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 167 ELHSKELKGKTIRCSLSETKNR-----------LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
L+ + GK IR +S NR +FI N+ + R G V
Sbjct: 95 HLNFTPVNGKPIRIMIS---NRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT-VL 150
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ D S +G+ FV + + A+ S +K+ N L + +
Sbjct: 151 SCKVAVDSNGQS--KGYGFVQFESEESAEISIEKL---NGMLLNDKQVYVGHFIRHQERI 205
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
A SQ +YVKN+P+ T+ + +K LF HG +T ++ +GK + FGF+++ S
Sbjct: 206 RANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDS 265
Query: 335 ALKAV 339
A AV
Sbjct: 266 AAAAV 270
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 36/278 (12%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VFI L + LRD G V ++ D +G+SKG+ FV F S+E A+ +I+
Sbjct: 123 ANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVD-SNGQSKGYGFVQFESEESAEISIE 181
Query: 167 ELHSKELKGKT------------IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+L+ L K IR + S+ N +++ N+P+ T+D+ + + G
Sbjct: 182 KLNGMLLNDKQVYVGHFIRHQERIRANGSQFTN-VYVKNLPETTTDDDLKNLFAPHGTIT 240
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
I + + +++ F FV + N A + +K L+ D T + A K+ +
Sbjct: 241 SAIVMT---DSNGKSKCFGFVNFQNTDSAAAAVEK-LDGTVLGDDKTLYVGRAQRKAERE 296
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A Q LY+KN+ D+ EK+KELF +G +T VM
Sbjct: 297 AELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLS 356
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ GF+ ++ A KA+ E++GK P++V
Sbjct: 357 KGSGFVAFSSPDEATKALN-----EMNGKMKGRKPLYV 389
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ ++I L +E L++L G + ++M D+ G SKG FV+F S + A KA+
Sbjct: 316 GANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQH-GLSKGSGFVAFSSPDEATKAL 374
Query: 166 DELHSKELKGKTIRCSLSETK 186
+E++ K K + ++++ K
Sbjct: 375 NEMNGKMKGRKPLYVAVAQRK 395
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 19/260 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 175 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 230
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 288
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+ +A AV+ +YE+ G+
Sbjct: 289 DHEAASAAVEALNEYELKGQ 308
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +D ++E+ R L E G++ L +D E+G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F E A A++ L+ ELKG+ +L++G K E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE 330
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
K G+SKGF FV F + + A KA+ E++ + + GK + +L++ K+
Sbjct: 437 KHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKD 482
>gi|197260810|gb|ACH56905.1| heterogeneous nuclear ribonucleoprotein r [Simulium vittatum]
Length = 252
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 229 NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVK 288
NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+VK LYV+
Sbjct: 2 NRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDE-GTMSKVKVLYVR 60
Query: 289 NIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
N+ + S EK+KE F+ +G V +V +D+ F+HY +R + + A++D + +I
Sbjct: 61 NLTHDISEEKLKEHFENYGRVERV------KKIKDYAFVHYEDRDNTVLAMRDLDGKDIG 114
Query: 349 G 349
G
Sbjct: 115 G 115
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 120/250 (48%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D EK++ELF ++G + + ++GK R FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKEMNGK 259
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I + +E LR+L G+ +R+M D E+G+S+G
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KE+ GK + ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 125/280 (44%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N +++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAM 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
+I ++ D ++RGF FV + + A + +M N K ++G + A K
Sbjct: 219 -SIRVMTDENG--KSRGFGFVSFERHEDAQKAVDEM---NGKEMNGKLMYVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
Q LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 273 QTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVATKPLYV 365
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 124/252 (49%), Gaps = 17/252 (6%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER-- 332
++KA +YVKNI + S E ++LF++HG++T + GK R FGF++Y +
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEA 281
Query: 333 -SSALKAVKDTE 343
S+A+ A+ DT+
Sbjct: 282 ASAAVDALNDTD 293
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ ++ + N + +++ + D S+ED RDL E GD+ + +D + G+S+GF
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARD-DQGKSRGFG 272
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV++ E A A+D L+ + +G+ +L++G K E+E RK E
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQ-----------KLYVGRAQKKHEREEELRKQYE 319
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 50/131 (38%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD------------------------ 141
G ++I L D +E LRD+ P G + ++M+D
Sbjct: 331 GVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDESKEESEE 390
Query: 142 --------------------------KESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175
K G+SKGF FV F + + A KA+ E++ K ++
Sbjct: 391 AKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEN 450
Query: 176 KTIRCSLSETK 186
K + +L++ K
Sbjct: 451 KPLYVALAQRK 461
>gi|348529973|ref|XP_003452486.1| PREDICTED: CUGBP Elav-like family member 3-like [Oreochromis
niloticus]
Length = 453
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 88/146 (60%), Gaps = 11/146 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++FIG +P++ E+DL+ + E G ++E+ ++KDK +G KG AF+++ ++E A K
Sbjct: 4 PDAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALK 63
Query: 164 AIDELH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A + LH K L G + I+ +++++R LF+G + K T+ + RK+ E G +E
Sbjct: 64 AQNALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDADVRKMFEPFG-SIE 122
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNA 241
+++ P S +G +FV + +NA
Sbjct: 123 ECTVLRGPDGTS--KGCAFVKFQSNA 146
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ ++ + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 365 PEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQT 424
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 425 AIQAMNGFQIGMKRLKVQLKRPKD 448
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K ++ D+R + EP G + E +++ + G SKG AFV F+S A+ AI+
Sbjct: 96 KLFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPD-GTSKGCAFVKFQSNAEAQAAINA 154
Query: 168 LH-SKELKGKT 177
LH S+ L G +
Sbjct: 155 LHGSRTLPGAS 165
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 21/245 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L + +E L +L + V +R+ +D+ +S G+A+V+F S + A A++
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 167 ELHSKELKGKTIRCSLSETKNR-----------LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
L+ + GK IR +S NR +FI N+ + R G V
Sbjct: 95 HLNFTPVNGKPIRIMIS---NRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT-VL 150
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ D S +G+ FV + + A+ S +K+ N L + +
Sbjct: 151 SCKVAVDSNGQS--KGYGFVQFESEESAEISIEKL---NGMLLNDKQVYVGHFIRHQERI 205
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
A SQ +YVKN+P+ T+ + +K LF HG +T ++ +GK + FGF+++ S
Sbjct: 206 RANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDS 265
Query: 335 ALKAV 339
A AV
Sbjct: 266 AAAAV 270
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 36/278 (12%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VFI L + LRD G V ++ D +G+SKG+ FV F S+E A+ +I+
Sbjct: 123 ANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVD-SNGQSKGYGFVQFESEESAEISIE 181
Query: 167 ELHSKELKGKT------------IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+L+ L K IR + S+ N +++ N+P+ T+D+ + + G
Sbjct: 182 KLNGMLLNDKQVYVGHFIRHQERIRANGSQFTN-VYVKNLPETTTDDDLKNLFAPHGTIT 240
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
I + + +++ F FV + N A + +K L+ D T + A K+ +
Sbjct: 241 SAIVMT---DSNGKSKCFGFVNFQNTDSAAAAVEK-LDGTVLGDDKTLYVGRAQRKAERE 296
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A Q LY+KN+ D+ EK+KELF +G +T VM
Sbjct: 297 AELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLS 356
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ GF+ ++ A KA+ E++GK P++V
Sbjct: 357 KGSGFVAFSSPDEATKALN-----EMNGKMKGRKPLYV 389
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ ++I L +E L++L G + ++M D+ G SKG FV+F S + A KA+
Sbjct: 316 GANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQH-GLSKGSGFVAFSSPDEATKAL 374
Query: 166 DELHSKELKGKTIRCSLSETK 186
+E++ K K + ++++ K
Sbjct: 375 NEMNGKMKGRKPLYVAVAQRK 395
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 123/257 (47%), Gaps = 14/257 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P + +++G L +E L ++ +G V +R+ +D + +S G+A+V++ + + +K
Sbjct: 76 PKNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEK 135
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A++EL+ +KG+ R S+ + + GN+ KN K + D TI
Sbjct: 136 ALEELNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILS 195
Query: 220 IKDPQNPSRN-RGFSFVLYYN----NACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
K + N +G+ FV + + NA ++ +LN G+ +S D +S
Sbjct: 196 CKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGH--HVSRRDRQS--K 251
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A + +Y+KNI + E+ LF++ G +T + +SGK R FGF+++
Sbjct: 252 FEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHE 311
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV + YE GK
Sbjct: 312 AAQKAVDEMNDYEFHGK 328
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 114/278 (41%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G SKG+ FV F S + A AI+ +
Sbjct: 169 IFIKNLDPAIDNKALHDTFSAFGTILSCKVALD-EYGNSKGYGFVHFASIDSANAAIEHV 227
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + ++ ++I N+ T++EF + E G +
Sbjct: 228 NGMLLNDKKVYVGHHVSRRDRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFG-AI 286
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L+KD + RGF FV + ++ A + +M +++ G + A + +
Sbjct: 287 TSFSLVKD--ESGKPRGFGFVNFESHEAAQKAVDEM--NDYEFHGKKLYVGRAQKRHERE 342
Query: 275 ------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ Q L++KN+ D +K F G +T + ++GK
Sbjct: 343 AELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKS 402
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ Y+ A KA+ + + + GK P++V
Sbjct: 403 KGFGFVCYSSPEEATKAIAEMNQRMLAGK-----PLYV 435
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
+D+ ++ A+ N + V+I + + ++E+ L E G + L+KD ESG+ +GF F
Sbjct: 246 RDRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKD-ESGKPRGFGF 304
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
V+F S E A+KA+DE++ E GK +L++G K E E RK E +
Sbjct: 305 VNFESHEAAQKAVDEMNDYEFHGK-----------KLYVGRAQKRHEREAELRKRYEQM 352
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L + + L+ G + ++M D E+G+SKGF FV + S E A KAI
Sbjct: 362 GVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTD-ENGKSKGFGFVCYSSPEEATKAI 420
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + L GK + +L++ K+
Sbjct: 421 AEMNQRMLAGKPLYVALAQRKD 442
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 131/278 (47%), Gaps = 39/278 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K +++L D G + ++ D E+G SKG+ FV F ++E AK+AI ++
Sbjct: 92 IFIKNLAKTIEQKELYDTFSLFGRILSCKIAMD-ENGNSKGYGFVHFENEECAKRAIQKV 150
Query: 169 HSKELKGKTIRC------SLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
++ + GK + S +++NR +++ N P +++ +++ + G +++
Sbjct: 151 NNMSICGKVVYVGNFIPRSDRKSQNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGE-IKS 209
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------ 270
++KD + +++GF FV Y N A+ + M ++ G + S A K
Sbjct: 210 ACVMKDSE--GKSKGFGFVCYLNPEHAEAAVAAMHGK--EIGGRSLYASRAQRKEERQEE 265
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
S S V LYVKN+ D E++KE+F ++G ++ VM +
Sbjct: 266 LKLRLEKQKAERRSKYVSNVN-LYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRS 324
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ + A KAV E +G+ P++V
Sbjct: 325 KGFGFVCFTNPEQATKAVT-----EANGRVEYSKPLYV 357
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++G++ + +D+ R ++GP V + +D + ++ G+ +V + + A+ + +
Sbjct: 4 LYVGDLHPDINDDQLRMKFSEIGP-VAVAHVCRDVTS-RKSLGYGYVNFEDPKDAERALE 61
Query: 249 KMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
+M N+++ P I W S D S S + +++KN+ +++ + F G
Sbjct: 62 QM---NYEVVMGRPIRIMW----SQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFG 114
Query: 308 EVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+ + ++G + +GF+H+ A +A++ I GK
Sbjct: 115 RILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGK 158
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 125/256 (48%), Gaps = 14/256 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E K A
Sbjct: 38 NSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVA 97
Query: 165 IDELHSKELKGKTIRCSLSETKNRLFI---GNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
I+ L+ +KG+ R S+ L GN+ KN D K + D I
Sbjct: 98 IERLNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFSVFGNILSS 157
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGN----TPTISWADPKSTPDH 275
K + + N +GF FV ++ A LN L+G P +S + S +
Sbjct: 158 KIATDENGNSKGFGFV-HFEEEAAAKEAIDALNGML-LNGQEIYVAPHLSRKERDSQLEK 215
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ A +YVKN+P +T+ E+ KELF++ G+ + +V+ G+ GK + FGF++Y
Sbjct: 216 TRA--NFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHED 273
Query: 335 ALKAVKDTEKYEIDGK 350
ALKAV++ E G+
Sbjct: 274 ALKAVEELNNTEFKGQ 289
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 134/282 (47%), Gaps = 39/282 (13%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
NG+ +FI L D + L D G++ ++ D E+G SKGF FV F + AK+A
Sbjct: 127 NGN-IFIKNLNADIDNKALYDTFSVFGNILSSKIATD-ENGNSKGFGFVHFEEEAAAKEA 184
Query: 165 IDELHSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDV 210
ID L+ L G+ I + L +T+ +++ NVP + TE+EF+++ E
Sbjct: 185 IDALNGMLLNGQEIYVAPHLSRKERDSQLEKTRANFTNVYVKNVPLDTTEEEFKELFEKP 244
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
G +T ++ + + +GF FV Y N+ A + +++ N FK G + A K
Sbjct: 245 G---KTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEELNNTEFK--GQELYVGRAQKK 299
Query: 271 ------------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK 318
+T A Q L++KN+ D+ EK+KE F G +T + +
Sbjct: 300 YERMQALKQQYEATRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTE 359
Query: 319 SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+GK + FGF+ ++ A KA+ + + + GK P++V
Sbjct: 360 NGKSKGFGFVCFSSPEEATKAITEKNQQIVAGK-----PLYV 396
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L++ P G + ++M+ E+G+SKGF FV F S E A KAI
Sbjct: 323 GVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRT-ENGKSKGFGFVCFSSPEEATKAI 381
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 382 TEKNQQIVAGKPLYVAIAQRK 402
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ +QL N + V++ +P D +EE+ ++L E G + L K E G+ KGF F
Sbjct: 207 KERDSQLEKTRANFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKG-EDGKLKGFGF 265
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
V++ + E A KA++EL++ E KG+ + ++ K
Sbjct: 266 VNYENHEDALKAVEELNNTEFKGQELYVGRAQKK 299
>gi|390176612|ref|XP_002132720.2| GA25725, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858697|gb|EDY70122.2| GA25725, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 818
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +PK E LR++ E G V + +++DK +G SKG FV+F ++ A K
Sbjct: 360 PDNIKMFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFFTRRAALK 419
Query: 164 AIDELHS-KELKGK--TIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
A D LH+ K L G I+ ++++NR LF+G + K E++ RK+ E G +E
Sbjct: 420 AQDALHNVKTLAGMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-NIEE 478
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
+++D QN +++G +FV + A + + L+ N ++G T
Sbjct: 479 CTVLRD-QN-GQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCT 521
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 730 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 789
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 790 AIKAMNGFQVGTKRLKVQLKKPK 812
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 123/259 (47%), Gaps = 12/259 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ EK++++F ++G + + SGK R FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGKSHLHFPVFV 359
+ E++GK P++V
Sbjct: 250 EMNGKEMNGK-----PIYV 263
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D EE LRD+ G+ +R+M D +SG+S+G
Sbjct: 174 KSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTD-DSGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KE+ GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKK 269
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 126/280 (45%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + E++ R V G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAM 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
+I ++ D + ++RGF FV + + A + +M N K ++G + A K
Sbjct: 219 -SIRVMTD--DSGKSRGFGFVSFERHEDAQKAVDEM---NGKEMNGKPIYVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
Q LYVKN+ D E++++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVATKPLYV 365
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVML--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 112/290 (38%), Gaps = 64/290 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGK-M 217
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
VM G K FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 7/251 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E ++ELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGKS 351
+ E+ GKS
Sbjct: 250 EMNGKEMSGKS 260
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+LR+L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK+I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D +++GF FV Y + A+ + ++M N K + G + + A K
Sbjct: 219 -SVKVMRDCSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEMSGKSIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 15/244 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + +E L ++ IG V +R+ +D + +S G+A+V++ + A++A++
Sbjct: 41 ASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARRALE 100
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDV-GPGVETIELIK 221
L E+ GK +R S L GNV KN E K + D P + +
Sbjct: 101 ALKYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSPYGQILSCKV 160
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN-----TPTISWAD-PKSTPDH 275
R+RG+ FV + A A + + +AN GN P + ++ ST
Sbjct: 161 ATDETGRSRGYGFVHFDTEANAT---RAISDANGMQLGNKKIFVAPFVRRSERVSSTKLE 217
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSA 335
+ LYV+N P+N + E +KE F GE+T ++M G R F FI+YAE S A
Sbjct: 218 DGVDEKFTNLYVRNFPENWNEEILKENFSPFGEITSMMMKSDPLG-RKFAFINYAENSMA 276
Query: 336 LKAV 339
A+
Sbjct: 277 KAAI 280
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 56/296 (18%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI + + + L D P G + ++ D E+G S+G+ FV F ++ A +AI +
Sbjct: 131 VFIKNIDESIDTKALYDAFSPYGQILSCKVATD-ETGRSRGYGFVHFDTEANATRAISDA 189
Query: 169 HSKELKGKTIRCS--------LSETK---------NRLFIGNVPKNWTEDEFRKVIEDVG 211
+ +L K I + +S TK L++ N P+NW E+ ++ G
Sbjct: 190 NGMQLGNKKIFVAPFVRRSERVSSTKLEDGVDEKFTNLYVRNFPENWNEEILKENFSPFG 249
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTPTISWADP- 269
+ ++ + DP R F+F+ Y N+ A + + M +F + G+ TI D
Sbjct: 250 E-ITSMMMKSDPLG----RKFAFINYAENSMAKAAIETMNGKDFSIKSGDKSTIEGEDTD 304
Query: 270 KSTPDHSAAASQVKA-------------------------LYVKNIPDNTSTEKIKELFQ 304
KS A Q +A LY+KN+ D+ + +++ELF+
Sbjct: 305 KSETKLLVCAHQDRARRHAMLKAKYDSMHAENKSKYQGVNLYIKNLDDSINDAELRELFE 364
Query: 305 RHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
G +T VM FGF+ + A AV + + K P++V
Sbjct: 365 GFGLITSCKVMVDEHGASLGFGFVCFVSPEDATHAVSEMHLKLVHNK-----PLYV 415
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L ++ +LR+L E G + ++M D E G S GF FV F S E A A+
Sbjct: 342 GVNLYIKNLDDSINDAELRELFEGFGLITSCKVMVD-EHGASLGFGFVCFVSPEDATHAV 400
Query: 166 DELHSKELKGKTIRCSLSETK----NRL 189
E+H K + K + L+E + NRL
Sbjct: 401 SEMHLKLVHNKPLYVGLAEKREQRLNRL 428
>gi|34555650|gb|AAQ74973.1| flowering time control protein isoform OsFCA-4 [Oryza sativa Indica
Group]
Length = 626
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 17/179 (9%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N ++FIG +P+ A+E+D+R L E GDV EV L+KD+++GE +G FV + + E A++A
Sbjct: 19 NYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERA 78
Query: 165 IDELHSK-ELKGKT----IRCSLSE------TKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
I LH++ L G +R + E +++LF+ ++ K T E ++ G
Sbjct: 79 IRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG-H 137
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPK 270
VE + ++KD SR GF A A S L+ N+ + G I +ADPK
Sbjct: 138 VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMS---ALSGNYVMRGCEQPLIIRFADPK 193
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIG+VP+ TED+ R + E+ G VE + LIKD + +G FV Y + A+ +
Sbjct: 22 KLFIGSVPRTATEDDVRPLFEEHGDVVE-VALIKD-RKTGEQQGCCFVKYATSEEAERAI 79
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + H A + L+V ++ + ++I+E+F
Sbjct: 80 RALHN-QYTLPGAMGPIQVRYADGERE-RHGAIEHK---LFVASLNKQATAKEIEEIFAP 134
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
+G V V +M G R GF+ ++ R AL A+
Sbjct: 135 YGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAM 169
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 7/251 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 88 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 147
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 148 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 206
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 207 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 266
Query: 341 DTEKYEIDGKS 351
+ E+ GK+
Sbjct: 267 EMNGKEMSGKA 277
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ + +L++L G V++M+D SG+SKG
Sbjct: 191 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 249
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 250 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 309
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ R+ G +++D R++GF FV +
Sbjct: 310 GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF 357
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 128/279 (45%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 175
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 235
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++D + +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 236 -SVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEM-NGK-EMSGKAIFVGRAQKKVERQ 290
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK++ F G +T KV++ G+S
Sbjct: 291 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRS- 349
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 350 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 382
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 310 GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 367
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 368 TEMNGRIVGSKPLYVALAQRK 388
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 46/282 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID++
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDKV 159
Query: 169 HSKELKGKTIRCS-----------LSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDH------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
+ Q LYVKN+ D+ + E+++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMMEDG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+S + FGF+ ++ A KAV E++G+ + P++V
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVT-----EMNGRIIVTKPLYV 367
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 126/254 (49%), Gaps = 19/254 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S K+ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDKV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMP-PGKSGKRDFGFIHYAERSSAL 336
+YVKN ++ + +K+KE+F+++G +T KV++ GKS R FGF+ + + +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS--RGFGFVAFEDPDAAE 246
Query: 337 KAVKDTEKYEIDGK 350
+AV E++GK
Sbjct: 247 QAV-----LELNGK 255
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSINDERLRREFAPFGTITSAKVMM--EDGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 120/250 (48%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D EK++ELF ++G + + ++GK R FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKEMNGK 259
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I + +E LR+L G+ +R+M D E+G+S+G
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KE+ GK + ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 125/280 (44%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N +++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAM 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
+I ++ D ++RGF FV + + A + +M N K ++G + A K
Sbjct: 219 -SIRVMTDENG--KSRGFGFVSFERHEDAQKAVDEM---NGKEMNGKLMYVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
Q LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 273 QTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVATKPLYV 365
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 127/257 (49%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 287 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALD 346
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ ++GK+IR S+ L FI N+ K+ + G + + +
Sbjct: 347 TMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGR-ILSSK 405
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL KS D A
Sbjct: 406 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLQGCKVFV-GRFKSRQDREAE 458
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 459 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 518
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 519 AAKKAVEEMNGRDINGQ 535
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 119/260 (45%), Gaps = 35/260 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 377 VFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 434
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K L+G + R SE N ++I N + ++ + V G
Sbjct: 435 NGKLLQGCKVFVGRFKSRQDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 493
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D + +++GF FV + ++ A + ++M + ++G ++ A K
Sbjct: 494 L-SVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVARAQKKVER 548
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ QV LYVKN+ D EK+++ F G +++V + +
Sbjct: 549 QAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEGQS 608
Query: 322 RDFGFIHYAERSSALKAVKD 341
+ FG I ++ ALKA+ +
Sbjct: 609 KGFGLICFSSPEDALKAMTE 628
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +D+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 450 KSRQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 508
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I + ++ K
Sbjct: 509 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQ 568
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L++ N+ +++ RK G +I +K Q +++GF + +
Sbjct: 569 VVKLYVKNLDDTIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF 616
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++++ L +E LR G + V++M+ E G+SKGF + F S E A KA+ E
Sbjct: 571 KLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDALKAMTE 628
Query: 168 LHSKELKGKTIRCSLSE 184
++ + L K + +L++
Sbjct: 629 MNGRILGSKPLSIALAQ 645
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 124/252 (49%), Gaps = 17/252 (6%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER-- 332
++KA +YVKNI + S + ++LF++HG++T + GK R FGF++Y +
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEA 281
Query: 333 -SSALKAVKDTE 343
S+A+ A+ DT+
Sbjct: 282 ASAAVDALNDTD 293
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ ++ + N + +++ + D S++D RDL E GD+ + +D + G+S+GF
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARD-DQGKSRGFG 272
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV++ E A A+D L+ + +G+ +L++G K E+E RK E
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQ-----------KLYVGRAQKKHEREEELRKQYE 319
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 20/255 (7%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L +E L DL PIG V +R+ +D + S G+A+V+F + AI++L
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 169 HSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
+ +KG+ R S+ +FI N+ G + + ++
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFG-NILSCKIA 160
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG----NTPTISWADPKSTPDHS 276
D SR GF +++ A +N L+G P +S D +S D
Sbjct: 161 TDETGKSRKFGF---VHFEEEEAAKEAIDAINGML-LNGLEVYVAPHVSKKDRQSKLDE- 215
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335
S +YVKNI T+ E+ +++F +G +T V+ GK R FGF+++ + ++A
Sbjct: 216 -VKSNFTNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAA 274
Query: 336 LKAVKDTEKYEIDGK 350
LKA ++ + G+
Sbjct: 275 LKACEELNDTDFKGQ 289
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 127/278 (45%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ D E+G+S+ F FV F +E AK+AID +
Sbjct: 130 VFIKNLHPAIDNKALHDTFSVFGNILSCKIATD-ETGKSRKFGFVHFEEEEAAKEAIDAI 188
Query: 169 HSKELKGKTIRCS-----------LSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G + + L E K+ +++ N+ T++EF K+ + G +
Sbjct: 189 NGMLLNGLEVYVAPHVSKKDRQSKLDEVKSNFTNVYVKNIDSETTQEEFEKMFSNYG-AI 247
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D N + RGF FV + ++ A + +++ + +FK G + A K
Sbjct: 248 TSAVLERD--NEGKLRGFGFVNFEDHNAALKACEELNDTDFK--GQKLYVGRAQKKYERL 303
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
S+ A Q L+VKN+ D+ +K++E F G +T V VM
Sbjct: 304 QELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRDEAGNS 363
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 364 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 396
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L ++ L + P G + V++M+D E+G SKGF FV F + E A KAI
Sbjct: 323 GVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRD-EAGNSKGFGFVCFSTPEEATKAI 381
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 382 TEKNQQIVAGKPLYVAIAQRK 402
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++L + N + V++ + + ++E+ + G + L +D E G+ +GF
Sbjct: 206 KKDRQSKLDEVKSNFTNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNE-GKLRGFG 264
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F A KA +EL+ + KG+ + ++ K
Sbjct: 265 FVNFEDHNAALKACEELNDTDFKGQKLYVGRAQKK 299
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 135/283 (47%), Gaps = 16/283 (5%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
E + ++SV D ++ + + N + +++G L +E L ++ PIG V +R+
Sbjct: 39 ESSDATSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRV 98
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV- 194
+D S +S G+A+V++ E +KAI+EL+ ++G+ R S+ + R GN+
Sbjct: 99 CRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIF 158
Query: 195 PKNWTEDEFRKVIEDVGPGVETIELIK-DPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253
KN K + D I +K + +++ F FV Y A Q + +
Sbjct: 159 IKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAA----QAAIES 214
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEK-IKELFQRHGE 308
+ N + S D + ++KA +YVKNI D TEK +ELF G+
Sbjct: 215 VNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNI-DLAYTEKEFEELFAPFGK 273
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+T + + GK + FGF+++ E +A KAV++ EI+G+
Sbjct: 274 ITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQ 316
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + V++ D + G+SK F FV + ++E A+ AI+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + L E K +++ N+ +TE EF ++ G +
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK-I 274
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + +++GF FV + + A + +++ + +++G + A K
Sbjct: 275 TSIYLEKDAE--GKSKGFGFVNFEEHEAAAKAVEELNDK--EINGQKIYVGRAQKKRERT 330
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L+VKN+ + +EK++E F+ G +T + +GK
Sbjct: 331 EELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKS 390
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + ++GK P++V
Sbjct: 391 KGFGFVCFSTPEEATKAITEMNQRMVNGK-----PLYV 423
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++L + N + +++ + +E++ +L P G + + L KD E G+SKGF
Sbjct: 233 KKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFG 291
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F E A KA++EL+ KE+ G+ I ++ K
Sbjct: 292 FVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKK 326
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L + E L + +P G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 350 GVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTPEEATKAI 408
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + GK + +L++ K
Sbjct: 409 TEMNQRMVNGKPLYVALAQRK 429
>gi|19111886|ref|NP_595094.1| mRNA cleavage factor complex subunit (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74676196|sp|O94432.1|YHKF_SCHPO RecName: Full=Uncharacterized RNA-binding protein C660.15
gi|4049514|emb|CAA22535.1| mRNA cleavage factor complex subunit (predicted)
[Schizosaccharomyces pombe]
Length = 474
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 133/282 (47%), Gaps = 48/282 (17%)
Query: 28 EQVEEDPEEEGGDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTAS 87
E+ +E+P E +F+ + D++Y ++A A+++D E ++ D + + +S
Sbjct: 57 ERTKENPFREEPGADFDRSGSDQQYS-AEAEANQEDDLNETSQQAPDPSSYDIRGQALSS 115
Query: 88 V-------GEDEKDKHA--QLLALPPNGS-------------------EVFIGGLPKDAS 119
GE+ K+ + AL +G+ ++FIGGL + +
Sbjct: 116 ATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETT 175
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKT 177
++ LRD E G+V + +M+D +G S+GF F++F++ K ++E+ SKE L GK
Sbjct: 176 DDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN----PKCVNEVMSKEHHLDGKI 231
Query: 178 IRCSLS------ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNR 230
I + E ++F+G VP + TE+EFR G ++ T+ + KD P R
Sbjct: 232 IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRP---R 288
Query: 231 GFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GF FV Y N + + + M + G + A PK++
Sbjct: 289 GFGFVTYENESAVEAT---MSQPYITIHGKPVEVKRATPKAS 327
>gi|430811054|emb|CCJ31450.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 484
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 121/256 (47%), Gaps = 49/256 (19%)
Query: 46 NDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN 105
+D+ +EYD S+K + + + + P V EE + + EDE+D+
Sbjct: 71 DDERDEYD------SKKHRRSRSPVTRESRPPVREE---SPKLTEDERDRRT-------- 113
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
VF+ L +L E +G V + +++KD+ SG SKG +V FR +E KAI
Sbjct: 114 ---VFVQQLAARLRTRELIAFFEKVGPVRDAQVVKDRVSGRSKGVGYVEFRDEESVHKAI 170
Query: 166 DELHSKELKGKTIRCSLSETK----------------------NRLFIGNVPKNWTEDEF 203
+ + + L G I L+E + +RL++GN+ N TED+
Sbjct: 171 N-MTGQRLLGIPIIVQLTEAEKNRQAKAEAMLSSGGRQSDAPFHRLYVGNIHFNLTEDDL 229
Query: 204 RKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263
R++ E G +E ++L K+P + R+RG+ FV + A A + +KM F+L G
Sbjct: 230 RQIFEPFGE-LEFVQLQKEP-DTGRSRGYGFV--QDPAQARDALEKM--NGFELAGRAIR 283
Query: 264 ISWADPKSTPDHSAAA 279
+ + K TP+ ++A
Sbjct: 284 VGLGNDKFTPESTSAV 299
>gi|432858764|ref|XP_004068927.1| PREDICTED: CUGBP Elav-like family member 4-like [Oryzias latipes]
Length = 505
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 87/142 (61%), Gaps = 11/142 (7%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DLR L E G ++E+ ++KD+ +G KG AF+++ ++E A KA +
Sbjct: 52 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQNA 111
Query: 168 LH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G + I+ +++++R LF+G + K +ED+ R++ E G +E +
Sbjct: 112 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFESFG-SIEECTI 170
Query: 220 IKDPQNPSRNRGFSFVLYYNNA 241
++ P ++G +FV Y ++A
Sbjct: 171 LRGPDG--NSKGCAFVKYSSHA 190
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K SE+D+R L E G + E +++ + G SKG AFV + S A+ AI
Sbjct: 140 KLFVGMLNKQQSEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAISA 198
Query: 168 LHSKE 172
LH +
Sbjct: 199 LHGSQ 203
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIG +P+N E + R + E+ G + + ++KD + ++G +F+ Y CA S
Sbjct: 52 KLFIGQIPRNLDEKDLRPLFEEFGK-IYELTVLKD-RFTGMHKGCAFLTY----CARESA 105
Query: 248 QKMLNA---NFKLDG-NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
K NA L G N P + P S + + + L+V + S + ++ LF
Sbjct: 106 LKAQNALHEQKTLPGMNRPI------QVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLF 159
Query: 304 QRHGEVTKVVMPPGKSG-KRDFGFIHY---AERSSALKAVKDTE 343
+ G + + + G G + F+ Y AE +A+ A+ ++
Sbjct: 160 ESFGSIEECTILRGPDGNSKGCAFVKYSSHAEAQAAISALHGSQ 203
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 124/250 (49%), Gaps = 23/250 (9%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L +E L ++ IG V +R+ +D + S G+A+V++ + A++
Sbjct: 55 PNTS-LYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAER 113
Query: 164 AIDELHSKELKGKTIRC-------SLSET-KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+++L+ +K K R SL +T + +FI KN E K + D
Sbjct: 114 ALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFI----KNLDETIDNKALHDTFAAFG 169
Query: 216 TIELIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
I K + + ++G+ FV Y A+ + K +N +L+ + P+ +
Sbjct: 170 DILSCKVAMDSTGASKGYGFVHYVTAESAE-AAIKGVN-GMQLNDKVVFVGIHVPRR--E 225
Query: 275 HSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHY 329
A +V+A LY+KN+P +TE++ E+F ++G VT + +SGK R FGF++Y
Sbjct: 226 RQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNY 285
Query: 330 AERSSALKAV 339
SA KAV
Sbjct: 286 ENHESASKAV 295
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 119/278 (42%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D GD+ ++ D +G SKG+ FV + + E A+ AI +
Sbjct: 147 IFIKNLDETIDNKALHDTFAAFGDILSCKVAMD-STGASKGYGFVHYVTAESAEAAIKGV 205
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ +L K + + + L+I N+P T +E ++ GP V
Sbjct: 206 NGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGP-V 264
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + D ++RGF FV Y N+ A + + + + ++K GN ++ A + D
Sbjct: 265 TSAAVQAD--ESGKHRGFGFVNYENHESASKAVEALHDKDYK--GNILYVARAQKRVERD 320
Query: 275 ------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ Q LY+KN+ D EK++ F G +T VM K
Sbjct: 321 AELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKDDKGVS 380
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R FGF+ ++ A KAV E++GK P++V
Sbjct: 381 RGFGFVCFSAPDEATKAVA-----EMNGKMLGSKPLYV 413
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 31/180 (17%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++I LP + + E+L ++ G V + D ESG+ +GF FV++ + E A KA++
Sbjct: 238 TNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQAD-ESGKHRGFGFVNYENHESASKAVE 296
Query: 167 ELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDE 202
LH K+ KG + + ++ + L+I N+ + +++
Sbjct: 297 ALHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEK 356
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262
+ G + + +++KD + S RGF FV + + D + + + N K+ G+ P
Sbjct: 357 LQAEFLPFG-TITSCKVMKDDKGVS--RGFGFVCF---SAPDEATKAVAEMNGKMLGSKP 410
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 16/180 (8%)
Query: 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNAC 242
S+ L++G + TE ++ +GP V +I + +D R+ G+++V Y N A
Sbjct: 53 SQPNTSLYVGELDPTVTEAMLYEIFSMIGP-VSSIRVCRDAVT-RRSLGYAYVNYLNAAD 110
Query: 243 ADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKE 301
A+ + +++ N+ L N I W S D S + +++KN+ + + + +
Sbjct: 111 AERALEQL---NYSLIKNKACRIMW----SQRDPSLRKTGQGNIFIKNLDETIDNKALHD 163
Query: 302 LFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK---SHLHFP 356
F G++ KV M + +GF+HY SA A+K +++ K +H P
Sbjct: 164 TFAAFGDILSCKVAMD-STGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVP 222
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L + +E L+ P G + ++MKD + G S+GF FV F + + A KA+
Sbjct: 340 GVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKD-DKGVSRGFGFVCFSAPDEATKAV 398
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ K L K + SL++ K+
Sbjct: 399 AEMNGKMLGSKPLYVSLAQRKD 420
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 7/251 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 88 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 147
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 148 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 206
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 207 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 266
Query: 341 DTEKYEIDGKS 351
+ E+ GK+
Sbjct: 267 EMNGKEMSGKA 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ + +L++L G V++M+D SG+SKG
Sbjct: 191 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 249
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 250 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 309
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ R+ G +++D R++GF FV +
Sbjct: 310 GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF 357
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 128/280 (45%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 175
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 235
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D + +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 236 -SVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEM---NGKEMSGKAIFVGRAQKKVER 289
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK++ F G +T KV++ G+S
Sbjct: 290 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRS 349
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 350 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 382
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 309 QGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 366
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 367 VTEMNGRIVGSKPLYVALAQRK 388
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 46/282 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID++
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDKV 159
Query: 169 HSKELKGKTIRCS-----------LSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDH------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
+ Q LYVKN+ D+ + E+++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMMEDG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+S + FGF+ ++ A KAV E++G+ + P++V
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVT-----EMNGRIIVTKPLYV 367
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 126/254 (49%), Gaps = 19/254 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S K+ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDKV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMP-PGKSGKRDFGFIHYAERSSAL 336
+YVKN ++ + +K+KE+F+++G +T KV++ GKS R FGF+ + + +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS--RGFGFVAFEDPDAAE 246
Query: 337 KAVKDTEKYEIDGK 350
+AV E++GK
Sbjct: 247 QAV-----LELNGK 255
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSINDERLRREFAPFGTITSAKVMM--EDGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|307940742|gb|ADN95985.1| G-strand specific single-stranded telomere-binding protein 3
[Nicotiana tabacum]
Length = 339
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 19/183 (10%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIGGL K+ + E E G++ + +MKD+ +G +GF F+++ I E
Sbjct: 16 KIFIGGLAKETTLEQFVKYFEKYGEIIDSVIMKDRHTGRPRGFGFITYEDPSVVDTVIAE 75
Query: 168 LH-----SKELKGKTIRCSLSETKN----RLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
H E+K +TI +E+K+ ++F+G +P TEDEF+ G V E
Sbjct: 76 YHIINDKQVEIK-RTIPKGSAESKDFKTKKIFVGGIPTTMTEDEFKNFFSKFGK-VTEYE 133
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD--GNTPTISWADPKSTPDHS 276
+I+D R+RGF F+++ N D +L ++D G I A+PK P +
Sbjct: 134 IIRD-HVSKRSRGFGFIVFDNEQVVD----NLLAEGNRIDMMGTQVEIKKAEPKK-PSNP 187
Query: 277 AAA 279
A+A
Sbjct: 188 ASA 190
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 94 DKHAQLLALPPNGS---------EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES 144
DK ++ P GS ++F+GG+P +E++ ++ G V E +++D S
Sbjct: 81 DKQVEIKRTIPKGSAESKDFKTKKIFVGGIPTTMTEDEFKNFFSKFGKVTEYEIIRDHVS 140
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
S+GF F+ F +++ + E + ++ G + +E K
Sbjct: 141 KRSRGFGFIVFDNEQVVDNLLAEGNRIDMMGTQVEIKKAEPK 182
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
++FIG + K T ++F K E G ++++ ++KD ++ R RGF F+ Y + + D
Sbjct: 15 GKIFIGGLAKETTLEQFVKYFEKYGEIIDSV-IMKD-RHTGRPRGFGFITYEDPSVVD-- 70
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
++ ++ I PK + + + + K ++V IP + ++ K F +
Sbjct: 71 --TVIAEYHIINDKQVEIKRTIPKGSAE--SKDFKTKKIFVGGIPTTMTEDEFKNFFSKF 126
Query: 307 GEVT--KVVMPPGKSGKRDFGFI 327
G+VT +++ R FGFI
Sbjct: 127 GKVTEYEIIRDHVSKRSRGFGFI 149
>gi|115478012|ref|NP_001062601.1| Os09g0123200 [Oryza sativa Japonica Group]
gi|34555646|gb|AAQ74971.1| flowering time control protein isoform OsFCA-3 [Oryza sativa Indica
Group]
gi|113630834|dbj|BAF24515.1| Os09g0123200 [Oryza sativa Japonica Group]
Length = 637
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 17/179 (9%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N ++FIG +P+ A+E+D+R L E GDV EV L+KD+++GE +G FV + + E A++A
Sbjct: 19 NYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERA 78
Query: 165 IDELHSK-ELKGKT----IRCSLSE------TKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
I LH++ L G +R + E +++LF+ ++ K T E ++ G
Sbjct: 79 IRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG-H 137
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPK 270
VE + ++KD SR GF A A S L+ N+ + G I +ADPK
Sbjct: 138 VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMS---ALSGNYVMRGCEQPLIIRFADPK 193
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIG+VP+ TED+ R + E+ G VE + LIKD + +G FV Y + A+ +
Sbjct: 22 KLFIGSVPRTATEDDVRPLFEEHGDVVE-VALIKD-RKTGEQQGCCFVKYATSEEAERAI 79
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + H A + L+V ++ + ++I+E+F
Sbjct: 80 RALHN-QYTLPGAMGPIQVRYADGERE-RHGAIEHK---LFVASLNKQATAKEIEEIFAP 134
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
+G V V +M G R GF+ ++ R AL A+
Sbjct: 135 YGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAM 169
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 7/251 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGKS 351
+ E+ GK+
Sbjct: 250 EMNGKEMSGKA 260
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ + +L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 129/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D + +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEM---NGKEMSGKAIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 120/250 (48%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ EK+KE+F ++G + + SGK + FGF+ + A +AV
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKEMNGK 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
K++ A++ A + V+I +D +E L+++ G +R+M D +SG+SKGF
Sbjct: 176 RKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFG 234
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FVSF E A++A+DE++ KE+ GK + ++ K
Sbjct: 235 FVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKK 269
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 105/234 (44%), Gaps = 35/234 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F + E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ +++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+I ++ D + +++GF FV + + A + +M N +++G + A K
Sbjct: 219 -SIRVMTD--DSGKSKGFGFVSFERHEDAQRAVDEM-NGK-EMNGKQVYVGRAQKKGERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVM 314
Q LYVKN+ D E++++ F G +T KV+M
Sbjct: 274 TELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM 327
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 7/251 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGKS 351
+ E+ GK+
Sbjct: 250 EMNGKEMSGKA 260
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ + +L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ R+ G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 128/280 (45%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D + +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEM---NGKEMSGKAIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 121/256 (47%), Gaps = 18/256 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L A+E L IG V R+ +D + S G+ +V+F + A++A++
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + G+ IR S+ K +FI N+ K + + +G + + +
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIG-KILSCK 119
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ D S+ G+ FV + CA+ + +K+ ++ + P S ++
Sbjct: 120 IAMDEHGNSK--GYGFVHFEKEECAERAIEKI--NGMMINDRVVYVGKFIPSSDRKSASG 175
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM---PPGKSGKRDFGFIHYAERSSA 335
+ +YVKN P +T+ EK++++F GE+ + P GKS + FGF+ + + A
Sbjct: 176 KLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKS--KGFGFVCFHDPDHA 233
Query: 336 LKAVKDTEKYEIDGKS 351
+AV+ EI+G++
Sbjct: 234 EQAVRVMHGKEINGRA 249
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 127/278 (45%), Gaps = 39/278 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K ++ L D IG + ++ D E G SKG+ FV F +E A++AI+++
Sbjct: 91 IFIKNLDKTIDQKQLYDTFSFIGKILSCKIAMD-EHGNSKGYGFVHFEKEECAERAIEKI 149
Query: 169 HSKELK------GKTIRCSLSETK------NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ + GK I S ++ N +++ N P + T+++ R + + G +++
Sbjct: 150 NGMMINDRVVYVGKFIPSSDRKSASGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGE-IKS 208
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDH 275
+ K+P+ +++GF FV +++ D++ Q + + K ++G S A K
Sbjct: 209 CCVEKNPEG--KSKGFGFVCFHD---PDHAEQAVRVMHGKEINGRALYASRAQRKEERQE 263
Query: 276 SAAASQVKA-------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
K LYVKN+ DN E++KE F +G +T VM
Sbjct: 264 ELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRS 323
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ + + A +AV + + K P++V
Sbjct: 324 KGFGFVCFTQPEQAARAVTEMNATLVGSK-----PLYV 356
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L + +E L++ G + ++M D +G SKGF FV F E A +A+
Sbjct: 283 GVNLYVKNLDDNIDDERLKEAFSHYGPITSAKVMTD-ANGRSKGFGFVCFTQPEQAARAV 341
Query: 166 DELHSKELKGKTIRCSLSETK 186
E+++ + K + +L++ K
Sbjct: 342 TEMNATLVGSKPLYVALAQRK 362
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 14/271 (5%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E ++ +L + N + +++G L +E L ++ PIG V +R+ +D + +S G
Sbjct: 46 EPSSEEQGELGGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLG 105
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRK 205
+A+V++ E +KAIDEL+ ++G+ R S+ + R GN+ KN K
Sbjct: 106 YAYVNYHKFEDGEKAIDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNK 165
Query: 206 VIEDVGPGVETIELIKDPQ-NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ D I K + +++ F FV Y A+ + + N N L N +
Sbjct: 166 ALHDTFSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAA---IENVNGMLL-NDREV 221
Query: 265 SWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
S D + ++KA +YVKNI + ++ +ELF +G++T + + + G
Sbjct: 222 FVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDG 281
Query: 321 K-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
K + FGF++Y E SA+ AV+ EI+G+
Sbjct: 282 KSKGFGFVNYEEHKSAVDAVEALNDKEINGQ 312
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 123/278 (44%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D + G+SK F FV + + E A+ AI+ +
Sbjct: 153 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-DMGQSKCFGFVHYETGEAAEAAIENV 211
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + E+K +++ N+ +TE EF ++ G +
Sbjct: 212 NGMLLNDREVFVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGK-I 270
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV Y + A + + + + +++G + A K
Sbjct: 271 TSIYLEKD--QDGKSKGFGFVNYEEHKSAVDAVEALNDK--EINGQKIYVGRAQKKRERT 326
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L++KN+ D +EK++E F+ G +T + +GK
Sbjct: 327 EELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKS 386
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + I+GK P++V
Sbjct: 387 KGFGFVCFSTPEEATKAITEMNQRMINGK-----PLYV 419
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L E L + +P G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 346 GVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVD-DAGKSKGFGFVCFSTPEEATKAI 404
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + +L++ K+
Sbjct: 405 TEMNQRMINGKPLYVALAQRKD 426
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +E++ +L P G + + L KD++ G+SKGF
Sbjct: 229 KKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQD-GKSKGFG 287
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV++ + A A++ L+ KE+ G+ I ++ K
Sbjct: 288 FVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKK 322
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 127/274 (46%), Gaps = 34/274 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D + G SKG+ FV + + E A AI ++
Sbjct: 100 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVTDGK-GNSKGYGFVHYETSEAADSAIAKV 158
Query: 169 HSKELKGKTIRC------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ K L GK + S E ++I N+ + +TE++ ++ G V++
Sbjct: 159 NGKMLNGKIVYVGRFIARKERTPGSDPEKFTNIYIKNLGEAYTEEDLKRDFGAFGT-VQS 217
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
L+KDP++ R F+FV + ++ A + ++ LN KL + A KS
Sbjct: 218 AVLMKDPRDIGRQ--FAFVNFEDHEAAHRATEE-LNGR-KLGDKEVYVGRAQKKSERESF 273
Query: 272 ---TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR--HGEVTKV-VMPPGKSGKRDFG 325
+ A Q LY+KN+ D + E++ +LF G++T VM K R FG
Sbjct: 274 LRKLREERAQKYQGINLYIKNLDDTVNDEELHKLFSALPFGQITSCKVMSDDKGNSRGFG 333
Query: 326 FIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
F+ Y A KAV E++GK + P++V
Sbjct: 334 FVCYTNPEDASKAVS-----EMNGKMVANKPIYV 362
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 22/252 (8%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + +++G L +E L ++ + +G V +R+ +D + S G+A+V+F + A+
Sbjct: 6 PYQSASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAE 65
Query: 163 KAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+A+D L+ +KG+ R S + +FI N+ K+ G +
Sbjct: 66 RALDTLNYTLIKGRPCRIMWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFG-NI 124
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYS----RQKMLNANFKLDGNTPTISWADPK 270
+ +++ D + S +G+ FV Y + AD + KMLN G P
Sbjct: 125 LSCKVVTDGKGNS--KGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKERTPG 182
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHY 329
S P+ + +Y+KN+ + + E +K F G V + V+M + R F F+++
Sbjct: 183 SDPE------KFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNF 236
Query: 330 AERSSALKAVKD 341
+ +A +A ++
Sbjct: 237 EDHEAAHRATEE 248
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCE--PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
G ++I L ++E+L L P G + ++M D + G S+GF FV + + E A K
Sbjct: 287 GINLYIKNLDDTVNDEELHKLFSALPFGQITSCKVMSD-DKGNSRGFGFVCYTNPEDASK 345
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
A+ E++ K + K I +L+E K+
Sbjct: 346 AVSEMNGKMVANKPIYVALAERKD 369
>gi|328871825|gb|EGG20195.1| hypothetical protein DFA_07315 [Dictyostelium fasciculatum]
Length = 551
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 95/163 (58%), Gaps = 19/163 (11%)
Query: 106 GSEVFIGGLPKDASEEDLRDL-CEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++FIG +PK +E+DLR++ + + + E++++++K + E +G AF++ + + A+K+
Sbjct: 4 GVKIFIGQIPKSFTEDDLREMFADFVDSIEEIKVIRNKATQEPQGCAFITMTNPDVAEKS 63
Query: 165 IDELH-SKELKGKT----IRCSLSE---TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
I +LH SK+ G + ++ + SE +LF+G +PK + ED+ RK+ D G V+
Sbjct: 64 IQQLHNSKKFPGVSNFLQVKYADSEQEKLSTKLFVGMLPKEYNEDDVRKLFSDYG-DVDE 122
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259
I +++ P N S++ GF SR+ LNA L+G
Sbjct: 123 ICILRGPNNQSKSCGF---------IKFQSRESCLNAISSLNG 156
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD--PQNPSRNRGFSFVLYYNNACADY 245
++FIG +PK++TED+ R++ D +E I++I++ Q P +G +F+ N A+
Sbjct: 6 KIFIGQIPKSFTEDDLREMFADFVDSIEEIKVIRNKATQEP---QGCAFITMTNPDVAEK 62
Query: 246 SRQKMLNA-NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
S Q++ N+ F N + +AD S L+V +P + + +++LF
Sbjct: 63 SIQQLHNSKKFPGVSNFLQVKYAD-------SEQEKLSTKLFVGMLPKEYNEDDVRKLFS 115
Query: 305 RHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSH 352
+G+V ++ + G + + + GFI + R S L A+ I H
Sbjct: 116 DYGDVDEICILRGPNNQSKSCGFIKFQSRESCLNAISSLNGIRIPPSPH 164
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+GS +F+ +P ++ +L L +P G V ++ DK +G SKGF FVSF + A
Sbjct: 465 PSGSNLFVYNIPNFYTDVELSVLFDPFGAVISSKVFIDKNTGTSKGFGFVSFDNPNSATT 524
Query: 164 AIDELHSKELKGKTIRCSL 182
AI L+ L GK ++ ++
Sbjct: 525 AITNLNGMMLNGKKLKVTV 543
>gi|348508140|ref|XP_003441613.1| PREDICTED: CUGBP Elav-like family member 4-like [Oreochromis
niloticus]
Length = 524
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 87/142 (61%), Gaps = 11/142 (7%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DLR L E G ++E+ ++KD+ +G KG AF+++ ++E A KA +
Sbjct: 52 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQNA 111
Query: 168 LH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G + I+ +++++R LF+G + K +ED+ R++ E G +E +
Sbjct: 112 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFESFG-SIEECTI 170
Query: 220 IKDPQNPSRNRGFSFVLYYNNA 241
++ P S +G +FV Y ++A
Sbjct: 171 LRGPDGNS--KGCAFVKYSSHA 190
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ + +L + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 436 PEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQA 495
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 496 AIQSMNGFQIGMKRLKVQLKRPKD 519
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K SE+D+R L E G + E +++ + G SKG AFV + S A+ AI
Sbjct: 140 KLFVGMLNKQQSEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAISA 198
Query: 168 LHSKE 172
LH +
Sbjct: 199 LHGSQ 203
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIG +P+N E + R + E+ G + + ++KD + ++G +F+ Y CA S
Sbjct: 52 KLFIGQIPRNLDEKDLRPLFEEFGK-IYELTVLKD-RFTGMHKGCAFLTY----CARESA 105
Query: 248 QKMLNA---NFKLDG-NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
K NA L G N P + P S + + + L+V + S + ++ LF
Sbjct: 106 LKAQNALHEQKTLPGMNRPI------QVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLF 159
Query: 304 QRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAV 339
+ G + + + G G + F+ Y+ + A A+
Sbjct: 160 ESFGSIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI 196
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 7/251 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E ++ELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGKS 351
+ E+ GKS
Sbjct: 250 EMNGKEMSGKS 260
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+LR+L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK+I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D +++GF FV Y + A+ + ++M N K + G + + A K
Sbjct: 219 -SVKVMRDCSG--KSKGFGFVSYEKHEDANKAVEEM---NGKEMSGKSIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 46/282 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRCS-----------LSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+S + FGF+ ++ A KAV E++G+ + P++V
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVT-----EMNGRIIVTKPLYV 367
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 126/254 (49%), Gaps = 19/254 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMP-PGKSGKRDFGFIHYAERSSAL 336
+YVKN ++ + +K+KE+F+++G +T KV++ GKS R FGF+ + + +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS--RGFGFVAFEDPDAAE 246
Query: 337 KAVKDTEKYEIDGK 350
+AV E++GK
Sbjct: 247 QAV-----LELNGK 255
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMM--EEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 7/251 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGKS 351
+ E+ GK+
Sbjct: 250 EMNGKEMSGKA 260
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ + +L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ R+ G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 128/280 (45%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D + +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEM---NGKEMSGKAIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 15/245 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L + +E L DL + V +R+ +D+ S G+A+V+F + + A
Sbjct: 21 PN-SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAAN 79
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A++ L+ L GK IR +S +FI N+ + ++ GP V
Sbjct: 80 AMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGP-VL 138
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ D N +++G+ FV + N A + + LN D + + +
Sbjct: 139 SCKVAVD--NNGQSKGYGFVQFENEEAAQSAINR-LNGMLINDKEVFVGRFVRHQERIE- 194
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ + + +YVKN+ + TS E +K+ F +G +T ++ +SGK + FGF+++ S
Sbjct: 195 ATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDS 254
Query: 335 ALKAV 339
A AV
Sbjct: 255 AAAAV 259
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 121/276 (43%), Gaps = 32/276 (11%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VFI L + L++ G V ++ D +G+SKG+ FV F ++E A+ AI+
Sbjct: 111 ANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVD-NNGQSKGYGFVQFENEEAAQSAIN 169
Query: 167 ELHSKELK------GKTIR------CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
L+ + G+ +R + S +++ N+ + ++++ +K + G
Sbjct: 170 RLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSIT 229
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
I ++KD +++GF FV + + A + +K+ F + + A K +
Sbjct: 230 SAI-VMKD--QSGKSKGFGFVNFQSPDSAAAAVEKLNGTTF--NDKVWYVGRAQRKGERE 284
Query: 275 HSAAAS----------QVKA--LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A ++KA LY+KN+ D EK+KELF G +T VM +
Sbjct: 285 AELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLS 344
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
+ GF+ ++ A +A+ I GK L+ V
Sbjct: 345 KGSGFVAFSTPEEASRALNGMNGKMI-GKKPLYVAV 379
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P + V++ L + S+EDL+ G + +MKD +SG+SKGF FV+F+S + A
Sbjct: 199 PKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKD-QSGKSKGFGFVNFQSPDSAAA 257
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
A+++L+ K ++ K
Sbjct: 258 AVEKLNGTTFNDKVWYVGRAQRK 280
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 31/266 (11%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P + +++G L + ++ L D+ +G V VR+ +D + S G+ +V++ S + A
Sbjct: 32 VPYMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDA 91
Query: 162 KKAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+A+D L+ K IR S +FI N+ K G
Sbjct: 92 ARALDILNFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFG-N 150
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273
+ + ++ D + ++RG+ FV + N A NA KL+G + D +
Sbjct: 151 ILSCKVATD--SSGQSRGYGFVQFDNEEAAQ-------NAIDKLNG----MLLNDKQVYV 197
Query: 274 DH--------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDF 324
H SA+ + +YVKN+ ++T+ E +K +F +GE+T V+ GK + F
Sbjct: 198 GHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCF 257
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGK 350
GF+++ +A KAV+ +ID K
Sbjct: 258 GFVNFENTDAAAKAVESLNGKKIDDK 283
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 130/277 (46%), Gaps = 39/277 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ ++ D SG+S+G+ FV F ++E A+ AID+L
Sbjct: 127 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATD-SSGQSRGYGFVQFDNEEAAQNAIDKL 185
Query: 169 HSKELKGKTI----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+ L K + R S S K N +++ N+ ++ TE++ + + + G + +
Sbjct: 186 NGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGE-ITSA 244
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS------ 271
+++D +++ F FV + N A + + LN K+D + A KS
Sbjct: 245 VIMRDADG--KSKCFGFVNFENTDAAAKAVES-LNGK-KIDDKEWYVGKAQKKSERELEL 300
Query: 272 ------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKR 322
+ + Q LY+KN+ D+ S E +KELF G +T VM P G S R
Sbjct: 301 KSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGIS--R 358
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
GF+ ++ A +A+ E++GK + P++V
Sbjct: 359 GSGFVAFSTPEEASRALA-----EMNGKMVVSKPLYV 390
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L S+E+L++L G + ++M+D SG S+G FV+F + E A +A+
Sbjct: 317 GVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDP-SGISRGSGFVAFSTPEEASRAL 375
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + K + +L++ K
Sbjct: 376 AEMNGKMVVSKPLYVALAQRK 396
>gi|218201679|gb|EEC84106.1| hypothetical protein OsI_30426 [Oryza sativa Indica Group]
Length = 758
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 17/179 (9%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N ++FIG +P+ A+E+D+R L E GDV EV L+KD+++GE +G FV + + E A++A
Sbjct: 120 NYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERA 179
Query: 165 IDELHSK-ELKGKT----IRCSLSE------TKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
I LH++ L G +R + E +++LF+ ++ K T E ++ G
Sbjct: 180 IRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG-H 238
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPK 270
VE + ++KD SR GF A A S L+ N+ + G I +ADPK
Sbjct: 239 VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMS---ALSGNYVMRGCEQPLIIRFADPK 294
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIG+VP+ TED+ R + E+ G VE + LIKD + +G FV Y + A+ +
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVE-VALIKD-RKTGEQQGCCFVKYATSEEAERAI 180
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + H A + L+V ++ + ++I+E+F
Sbjct: 181 RALHN-QYTLPGAMGPIQVRYADGERE-RHGAIEHK---LFVASLNKQATAKEIEEIFAP 235
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
+G V V +M G R GF+ ++ R AL A+
Sbjct: 236 YGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAM 270
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 46/282 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRCS-----------LSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+S + FGF+ ++ A KAV E++G+ + P++V
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVT-----EMNGRIIVTKPLYV 367
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 126/254 (49%), Gaps = 19/254 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMP-PGKSGKRDFGFIHYAERSSAL 336
+YVKN ++ + +K+KE+F+++G +T KV++ GKS R FGF+ + + +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS--RGFGFVAFEDPDAAE 246
Query: 337 KAVKDTEKYEIDGK 350
+AV E++GK
Sbjct: 247 QAV-----LELNGK 255
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMM--EEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 125/261 (47%), Gaps = 20/261 (7%)
Query: 102 LPPNGS--EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
+PP+ S +++G L +D +E L ++ +G V +R+ +D + +S G+A+V++ +
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 160 FAKKAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVG 211
A++A+D L+ +KG+ R S +F+ N+ K G
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFG 128
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
+ + ++ D S+N G FV Y + A + +K+ +L + KS
Sbjct: 129 -NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKV--NGMQLGSKNVYVGHFIKKS 183
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE 331
+ + ++ LYVKN PD + +K+LF +GE+T +++ + R F FI+Y++
Sbjct: 184 --ERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV-KSDNKNRKFCFINYSD 240
Query: 332 RSSALKAVKDTEKYEI--DGK 350
SA A+++ +I DGK
Sbjct: 241 ADSARNAMENLNGKKITEDGK 261
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +++ L++L EP G + ++MKD + +SKGF FV F + E A KA+
Sbjct: 406 GVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEANKAV 464
Query: 166 DELHSKELKGKTIRCSLSETK 186
E+H K + GK + L+E +
Sbjct: 465 TEMHLKIINGKPLYVGLAEKR 485
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 9/164 (5%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++G++ ++ TE ++ VG V +I + +D ++ G+++V Y+N A A+ +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVG-HVLSIRVCRDSVT-RKSLGYAYVNYHNLADAERALD 75
Query: 249 KMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ N K G + W S D S S ++VKN+ + + + F G
Sbjct: 76 TLNYTNIK--GQPARLMW----SHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGN 129
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ + + GK +++GF+HY + SA +A++ ++ K+
Sbjct: 130 ILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKN 173
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LY+KN+ D+ + + +KELF+ +G +T VM K + FGF+ + A KAV +
Sbjct: 409 LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 468
Query: 344 KYEIDGKSHLHFPVFV 359
I+GK P++V
Sbjct: 469 LKIINGK-----PLYV 479
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 19/258 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ + +
Sbjct: 110 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGE 169
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 170 KALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 229
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + + PK D +
Sbjct: 230 SCKVAQDENGNSKGYGFVHYETDEAAANAI-KHVNGML-LNEKKVYVGYHIPKK--DRQS 285
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNIP + E+ +ELF ++G+VT + GK R FGF+++
Sbjct: 286 KFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTH 345
Query: 333 SSALKAVKDTEKYEIDGK 350
+A KAV+ E++GK
Sbjct: 346 EAASKAVE-----ELNGK 358
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A AI +
Sbjct: 204 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAANAIKHV 262
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + K +++ N+P T++EFR++ G V
Sbjct: 263 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYG-DV 321
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L + + ++RGF FV + + A + +++ +F+ G + A K +
Sbjct: 322 TSSSLARS--DEGKSRGFGFVNFTTHEAASKAVEELNGKDFR--GQELYVGRAQKKHERE 377
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
AA Q KA LY+KN+ D+ +K++++F +G +T
Sbjct: 378 EELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGPIT 425
>gi|294460252|gb|ADE75708.1| unknown [Picea sitchensis]
Length = 396
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 21/148 (14%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
++FIGG+ D SE+ L+D G V +V +MKD+ +G ++GF FV F A + I
Sbjct: 6 GKIFIGGISWDTSEDRLKDYFGNYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVADRVIQ 65
Query: 167 ELHSKELKGKTIRC----------SLSETKN-------RLFIGNVPKNWTEDEFRKVIED 209
E H+ + G+ + ++ T N ++F+G + TED+FRK E
Sbjct: 66 EKHT--IDGRAVEAKRVVPRDEQQNVQRTSNMAGPRTKKIFVGGLAPTVTEDDFRKYFEQ 123
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLY 237
G + + ++ D R+RGF F+ Y
Sbjct: 124 FG-NITDVVVMYD-HTTQRHRGFGFITY 149
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P ++F+GGL +E+D R E G++ +V +M D + +GF F+++ S++ K
Sbjct: 98 PRTKKIFVGGLAPTVTEDDFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDK 157
Query: 164 AIDELHSKELKGKTI 178
+ + +LK KT+
Sbjct: 158 VLQQTF-HQLKEKTV 171
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 124/258 (48%), Gaps = 14/258 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 61 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGE 120
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 121 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 180
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N N L+ + + PK D +
Sbjct: 181 SCKVAQDENGNSKGYGFVHYETDEAAAQAI-KHVN-NMLLNEKKVYVGYHIPKK--DRQS 236
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI + E+ ++LF ++G+VT + GK R FGF+++
Sbjct: 237 KFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTH 296
Query: 333 SSALKAVKDTEKYEIDGK 350
A KAV++ E G+
Sbjct: 297 ECAAKAVEELNGKEFRGQ 314
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
++ L K + K +++ N+ T++EFR + G V
Sbjct: 214 NNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DV 272
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D + ++RGF FV + + CA + +++ F+ G + A K
Sbjct: 273 TSSSLARDSE--GKSRGFGFVNFTTHECAAKAVEELNGKEFR--GQDLYVGRAQKKHERE 328
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A Q LY+KN+ D+ +K++++F +G +T
Sbjct: 329 EELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPIT 376
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
D+ G+SKGF FV F + + A KA+ E++ + ++GK + +L++ K
Sbjct: 427 DRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRK 472
>gi|33390912|gb|AAQ17123.1| flowering time control protein isoform OsFCA-1 [Oryza sativa Indica
Group]
gi|47496990|dbj|BAD20100.1| Flowering time control protein FCA gamma-like [Oryza sativa
Japonica Group]
gi|50261763|gb|AAT72462.1| FCA gamma protein [Oryza sativa Japonica Group]
gi|58003966|gb|AAW62371.1| FCA [Oryza sativa Japonica Group]
Length = 738
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 17/179 (9%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N ++FIG +P+ A+E+D+R L E GDV EV L+KD+++GE +G FV + + E A++A
Sbjct: 120 NYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERA 179
Query: 165 IDELHSK-ELKGKT----IRCSLSE------TKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
I LH++ L G +R + E +++LF+ ++ K T E ++ G
Sbjct: 180 IRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG-H 238
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPK 270
VE + ++KD SR GF A A S L+ N+ + G I +ADPK
Sbjct: 239 VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMS---ALSGNYVMRGCEQPLIIRFADPK 294
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIG+VP+ TED+ R + E+ G VE + LIKD + +G FV Y + A+ +
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVE-VALIKD-RKTGEQQGCCFVKYATSEEAERAI 180
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + H A + L+V ++ + ++I+E+F
Sbjct: 181 RALHN-QYTLPGAMGPIQVRYADGERE-RHGAIEHK---LFVASLNKQATAKEIEEIFAP 235
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
+G V V +M G R GF+ ++ R AL A+
Sbjct: 236 YGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAM 270
>gi|145539558|ref|XP_001455469.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423277|emb|CAK88072.1| unnamed protein product [Paramecium tetraurelia]
Length = 823
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 130/252 (51%), Gaps = 25/252 (9%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI LPK+ + ++ L G E R++KDK SKGFA+V F S E A++A++ L
Sbjct: 546 IFIKYLPKELTANEVIALIPNCG-ALECRIVKDKNQV-SKGFAYVDFTSDEDAQQAVNIL 603
Query: 169 HSKELKGKTIRCSLS-------ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
++K + G+ + ++S + K L++ N+P + TE +++ G GV+ I ++K
Sbjct: 604 NNKMVGGEKLYAAISKPPKLYQDDKLTLYLDNLPYSITE---QQLAAKAGEGVKQIRIVK 660
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP--KSTPDHSAAA 279
D + + RG++++ YN + ++LN + +DG + +D K +H
Sbjct: 661 DSK--GKPRGYAYI-EYNEEEDKQNGLELLNQDPYIDGRKYFVKLSDSLEKIKQNH---- 713
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
Q ++ +KN+P +I+++F +T++ +P + GK + F FI + E+ LK
Sbjct: 714 -QNNSIIIKNLPFKVREIEIRQIFDGMN-ITQIEIPKNEQGKPKGFAFIEF-EKQKHLKL 770
Query: 339 VKDTEKYEIDGK 350
D E G+
Sbjct: 771 ALDLNGIEFKGR 782
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + + + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKCRREREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN ++ E++KE F ++G+ V VM P GKS + FGF+ + A KA
Sbjct: 190 FTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKS--KGFGFVSFERHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V D +++GK
Sbjct: 248 VDDMNGKDVNGK 259
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 126/279 (45%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTI-----RCSLSE-----TKNRLFIGNVPKNWTED----EFRKVIEDVGPGV 214
+ L + + +C K + F KN+ ED ++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + M + ++G + A K
Sbjct: 219 -SVKVMTDPSG--KSKGFGFVSFERHEDANKAVDDMNGKD--VNGKIMFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+++ A+L A + V+I +D +E L++ G V++M D SG+SKGF
Sbjct: 176 RREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTD-PSGKSKGFG 234
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSL--------SETKNR--------------- 188
FVSF E A KA+D+++ K++ GK + +E K R
Sbjct: 235 FVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGV 294
Query: 189 -LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G ++++ R++GF FV +
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE----GRSKGFGFVCF 340
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 119/244 (48%), Gaps = 18/244 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L ++ +G V +R+ +D + S G+A+V++ + + A +A++
Sbjct: 24 TSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALE 83
Query: 167 ELHSKELKGKTIRCSLSE---------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
L+ + GK IR S T N +FI N+ K+ K + D TI
Sbjct: 84 LLNFNAVNGKPIRIMFSHRDPSIRKSGTAN-IFIKNLDKSIDN----KALHDTFAAFGTI 138
Query: 218 ELIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
K +PS +++G+ FV + A + +K+ L+ + + D S
Sbjct: 139 LSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKV--NGMLLNDKQVFVGPFVRRQERDQS 196
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335
S+ +YVKN+ D+T+ +++K++F+ +G ++ V+ GK + FGF+++ A
Sbjct: 197 GVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDA 256
Query: 336 LKAV 339
KAV
Sbjct: 257 AKAV 260
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 128/282 (45%), Gaps = 44/282 (15%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +FI L K + L D G + ++ D SG+SKG+ FV F +E A+ AI+
Sbjct: 112 ANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDP-SGQSKGYGFVQFEQEESAQTAIE 170
Query: 167 ELHSKELKGKTI------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+++ L K + + + N +++ N+ + T+DE +KV E GP +
Sbjct: 171 KVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGP-I 229
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM--LNANFKLDGNTPTISWADPKST 272
+ +++D N +++ F FV N AD + + + LN K D + A KS
Sbjct: 230 SSAVVMRD--NEGKSKCFGFV---NFEHADDAAKAVEALNGK-KFDEKEWYVGRAQKKSE 283
Query: 273 PDHSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPG 317
+ A Q LY+KN+ D EK++E+F +G + VM P G
Sbjct: 284 REAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQG 343
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+S R GF+ ++ A +AV E++GK P++V
Sbjct: 344 QS--RGSGFVAFSSPDEATRAVT-----EMNGKMVGSKPLYV 378
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR++ G + ++M+D + G+S+G FV+F S + A +A+
Sbjct: 305 GVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQ-GQSRGSGFVAFSSPDEATRAV 363
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E++ K + K + +L++ K +N + F + VGP V T + P
Sbjct: 364 TEMNGKMVGSKPLYVALAQRKEER------RNRLQAAFAQRTP-VGPAVPTSLPMYHPAG 416
Query: 226 PSRNRGFSF 234
P G S+
Sbjct: 417 PGMGPGMSY 425
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 14/247 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 KALEELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + ++G+ FV Y + A + K +N L+ + + PK D +
Sbjct: 175 SCKVAQDETGASKGYGFVHYETDEAAAQAI-KHVNGML-LNEKKVYVGYHIPKK--DRQS 230
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI + + + +ELF+++G+VT + + GK R FGF+++
Sbjct: 231 KFEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTH 290
Query: 333 SSALKAV 339
+A KAV
Sbjct: 291 EAAYKAV 297
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 80/155 (51%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + D ++ + R+L E GDV L +D+E G+S+GF
Sbjct: 225 KKDRQSKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQE-GKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A KA+DEL+ + +G+ + ++ K+
Sbjct: 284 FVNFTTHEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGV 343
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +D+ R++ + GP + + ++++D
Sbjct: 344 NLYIKNLDDDVDDDKLRQMFSEFGP-ITSAKVMRD 377
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ETGASKGYGFVHYETDEAAAQAIKHV 207
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + K +++ N+ + T++EFR++ E G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYG-DV 266
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D + ++RGF FV + + A Y LN N G + A K
Sbjct: 267 TSSSLARDQE--GKSRGFGFVNFTTHEAA-YKAVDELNGN-DFRGQELYVGRAQKKHERE 322
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A+ Q LY+KN+ D+ +K++++F G +T
Sbjct: 323 EELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPIT 370
>gi|298710156|emb|CBJ31866.1| trinucleotide repeat containing 4, isoform CRA_d [Ectocarpus
siliculosus]
Length = 494
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 86/153 (56%), Gaps = 17/153 (11%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +PK EEDLR + E G++F++ +++DK SG +G AF+++ ++ A AI
Sbjct: 45 KLFVGQIPKHMEEEDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARVSADAAIAA 104
Query: 168 LHSKEL--KGKT---IRCS--LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
LH + +G+ +R + +E +N+LF+G PK+ EDE R V G + I +I
Sbjct: 105 LHGQRRLDRGQNPLQVRPAEGQAEQENKLFVGMAPKSANEDEIRAVFAPYGT-LREIHVI 163
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253
++ N+G +FV Y +RQ L+A
Sbjct: 164 RN--QDGTNKGCAFVKY-------TTRQSALDA 187
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP+D S+ DL P G V ++ D+ SGESKGF FVS+ A+
Sbjct: 367 PPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYSLPSHAEA 426
Query: 164 AIDELHSKELKGKTIRC 180
AI +++ ++ K ++
Sbjct: 427 AIAQMNGFQIGSKRLKV 443
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G PK A+E+++R + P G + E+ ++++++ G +KG AFV + +++ A AI+
Sbjct: 132 KLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQD-GTNKGCAFVKYTTRQSALDAIEA 190
Query: 168 LH 169
LH
Sbjct: 191 LH 192
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 46/282 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRCS-----------LSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+S + FGF+ ++ A KAV E++G+ + P++V
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVT-----EMNGRIIVTKPLYV 367
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 126/254 (49%), Gaps = 19/254 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMP-PGKSGKRDFGFIHYAERSSAL 336
+YVKN ++ + +K+KE+F+++G +T KV++ GKS R FGF+ + + +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS--RGFGFVAFEDPDAAE 246
Query: 337 KAVKDTEKYEIDGK 350
+AV E++GK
Sbjct: 247 QAV-----LELNGK 255
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMM--EEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|169599154|ref|XP_001793000.1| hypothetical protein SNOG_02393 [Phaeosphaeria nodorum SN15]
gi|160704547|gb|EAT90605.2| hypothetical protein SNOG_02393 [Phaeosphaeria nodorum SN15]
Length = 544
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 88 VGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGES 147
V ED++DK +F+ + + A L E +G V E +++KD+ +G S
Sbjct: 142 VTEDDRDKRT-----------IFVQQISQRALTHHLLAFFETVGPVIEAQIVKDRVTGRS 190
Query: 148 KGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK--------------------- 186
KG +V F+ +E KA+ EL ++LKG I L+E +
Sbjct: 191 KGVGYVEFKDEESVAKAL-ELTGQKLKGVPIIAQLTEAEKNRAARPSEGGAAPGANGAPF 249
Query: 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
+RL++GN+ + TE + + G +E + L +D NP+R++G+ FV + + A +
Sbjct: 250 HRLYVGNIHFSVTEQDLHTIFAPFGE-LEQVTLQRDETNPARSKGYGFVQFVDPTKAKEA 308
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+M F+L G + + K TP+ +A+
Sbjct: 309 LAEM--NGFELAGRQIRVGLGNDKFTPESTAS 338
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S L +GN+ KN K + D +I K
Sbjct: 134 TMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 193
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST----PDHSAA 278
N +RGF FV + + A QK +N + N + KS + A
Sbjct: 194 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 249
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 250 ALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQK 309
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 310 AVDHMNGKEVRGQ 322
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + V++ L D E+ L+DL G + V++M+D +G+S+G
Sbjct: 237 KSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRD-SNGQSRG 295
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL--------SETKNR------------- 188
F FV+F E A+KA+D ++ KE++G+ + SE K R
Sbjct: 296 FGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQ 355
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + ++ ++V G I K S ++GF FV +
Sbjct: 356 GVNLYVKNLDDSINDERLKEVFSAYG----VITSAKVMTESSHSKGFGFVCF 403
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 114/289 (39%), Gaps = 62/289 (21%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + +++ ++ S+GF FV F + E A+KAI+ +
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 221
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ + +++ N+ + E + + G +
Sbjct: 222 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGK-M 280
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
+++++++D SR GF FV LY A RQ
Sbjct: 281 QSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSE 338
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ + E++KE+F +G +T
Sbjct: 339 LKRRFE--------------QVKQERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVIT 384
Query: 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ S + FGF+ ++ A KAV E++G+ P++V
Sbjct: 385 SAKVMTESSHSKGFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 428
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 39 GDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
G NFE++++ ++ G + Q R E ++ V ++ ++++
Sbjct: 297 GFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRY-- 354
Query: 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
G +++ L ++E L+++ G + ++M ES SKGF FV F S
Sbjct: 355 ------QGVNLYVKNLDDSINDERLKEVFSAYGVITSAKVMT--ESSHSKGFGFVCFSSP 406
Query: 159 EFAKKAIDELHSKELKGKTIRCSLSETK 186
E A KA+ E++ + + K + +L++ K
Sbjct: 407 EEATKAVTEMNGRIVGTKPLYVALAQRK 434
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 46/282 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRCS-----------LSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+S + FGF+ ++ A KAV E++G+ + P++V
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVT-----EMNGRIIVTKPLYV 367
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 126/254 (49%), Gaps = 19/254 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMP-PGKSGKRDFGFIHYAERSSAL 336
+YVKN ++ + +K+KE+F+++G +T KV++ GKS R FGF+ + + +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS--RGFGFVAFEDPDAAE 246
Query: 337 KAVKDTEKYEIDGK 350
+AV E++GK
Sbjct: 247 QAV-----LELNGK 255
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMM--EEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|290985168|ref|XP_002675298.1| hypothetical protein NAEGRDRAFT_80404 [Naegleria gruberi]
gi|284088893|gb|EFC42554.1| hypothetical protein NAEGRDRAFT_80404 [Naegleria gruberi]
Length = 641
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 11/151 (7%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFAKKAIDE 167
VF+ LP S+EDLR+L P G++ +M DK S GF FV F ++ A+ AI
Sbjct: 124 VFVKYLPPHFSDEDLRELFTPFGEIVSCHVMTDKTRENSSLGFGFVRFSNENEAQDAIQG 183
Query: 168 LHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
L+ K + K + C LS + ++ LFI N+P ++ E+ ++ E GP + +++
Sbjct: 184 LNEKSIGNKRLLCKLSNSAGNKEKDQQSNLFIRNIPPHYDEETLKQAFEVFGP-ISKVKI 242
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
+ D N R++ + F + N A + QKM
Sbjct: 243 MID-INTQRSKCYGFCKFENRKDALSAIQKM 272
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 271 STP-DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFI 327
S+P D ++ + + L++ ++P + K+ ELF + GE+ KV+ P + + +GF+
Sbjct: 463 SSPEDKNSKSGETANLFIFHLPGDVDDSKLMELFSKFGEIESVKVIRDPKTNLSKGYGFV 522
Query: 328 HYAERSSALKAVKDTEKYEIDGKSHL 353
Y SA++AV Y+I GK HL
Sbjct: 523 KYCNIDSAMEAVSKMNSYKI-GKKHL 547
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 45/76 (59%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +FI LP D + L +L G++ V++++D ++ SKG+ FV + + + A +A+
Sbjct: 476 ANLFIFHLPGDVDDSKLMELFSKFGEIESVKVIRDPKTNLSKGYGFVKYCNIDSAMEAVS 535
Query: 167 ELHSKELKGKTIRCSL 182
+++S ++ K ++ S
Sbjct: 536 KMNSYKIGKKHLKVSF 551
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 40/278 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D SG+SKGF FV F ++E A KAI++L
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAIEKL 177
Query: 169 HSKELKGKTI----------RCSLSE-TK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L K + R S+SE TK N +F+ N+ + +E++ + + + GP + +
Sbjct: 178 NGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP-ITS 236
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
+ +++D + S+ GF + + NA + LN K+DG + A KS
Sbjct: 237 VVVMRDGEGKSKCFGF---VNFENADDAARSVEALNGK-KVDGKEWYVGKAQKKSEREVE 292
Query: 272 -------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGK 321
+ +A Q LYVKN+ D+ +K+KELF G +T VM P G S
Sbjct: 293 LKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGIS-- 350
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R GF+ ++ A +A+ E++G+ + P++V
Sbjct: 351 RGSGFVAFSSPEEAARALA-----EMNGRMIVSKPLYV 383
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ +++ L ++ L++L G + ++M+D +G S+G FV+F S E A +A+
Sbjct: 310 GANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDP-NGISRGSGFVAFSSPEEAARAL 368
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 369 AEMNGRMIVSKPLYVALAQRK 389
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 40/278 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D SG+SKGF FV F ++E A KAI++L
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAIEKL 177
Query: 169 HSKELKGKTI----------RCSLSE-TK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L K + R S+SE TK N +F+ N+ + +E++ + + + GP + +
Sbjct: 178 NGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP-ITS 236
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
+ +++D + S+ GF + + NA + LN K+DG + A KS
Sbjct: 237 VVVMRDGEGKSKCFGF---VNFENADDAARSVEALNGK-KVDGKEWYVGKAQKKSEREVE 292
Query: 272 -------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGK 321
+ +A Q LYVKN+ D+ +K+KELF G +T VM P G S
Sbjct: 293 LKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGIS-- 350
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R GF+ ++ A +A+ E++G+ + P++V
Sbjct: 351 RGSGFVAFSSPEEAARALA-----EMNGRMIVSKPLYV 383
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ +++ L ++ L++L G + ++M+D +G S+G FV+F S E A +A+
Sbjct: 310 GANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRD-PNGISRGSGFVAFSSPEEAARAL 368
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 369 AEMNGRMIVSKPLYVALAQRK 389
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 112/290 (38%), Gaps = 64/290 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KM 217
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
VM G K FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 122/261 (46%), Gaps = 22/261 (8%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN + +++G L +E L +L IG V +R+ +D + S G+A+V++ S ++
Sbjct: 52 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSE--------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A++EL+ +KGK R S+ + +FI N+ G +
Sbjct: 112 ALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 170
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPD 274
+ ++ D S +G+ FV Y +D + Q + + N L+ + PK D
Sbjct: 171 SCKVAVDEHGNS--KGYGFVHY---ETSDAANQAIKSVNGMLLNEKKVFVGHHIPKK--D 223
Query: 275 HSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHY 329
+ ++KA +YVKNI T+ ++ +ELF+++G++T + GK R FGF+++
Sbjct: 224 RMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNF 283
Query: 330 AERSSALKAVKDTEKYEIDGK 350
A KAV + + G+
Sbjct: 284 IRHEDAAKAVDELNDLDFKGQ 304
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ D E G SKG+ FV + + + A +AI +
Sbjct: 145 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAVD-EHGNSKGYGFVHYETSDAANQAIKSV 203
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ T+DEFR++ E G +
Sbjct: 204 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQ-I 262
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L D Q + RGF FV + + A + ++ + +FK G + A K
Sbjct: 263 TSASLAHDDQ--GKVRGFGFVNFIRHEDAAKAVDELNDLDFK--GQKLYVGRAQKKHERE 318
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ +A Q LYVKN+ D E+++++F+ +G +T
Sbjct: 319 EELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELRKIFEPYGAIT 366
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 74/155 (47%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + ++++ R+L E G + L D + G+ +GF
Sbjct: 221 KKDRMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHD-DQGKVRGFG 279
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F E A KA+DEL+ + KG+ + ++ K+
Sbjct: 280 FVNFIRHEDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGV 339
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L++ N+ ++E RK+ E G + + ++++D
Sbjct: 340 NLYVKNLADEIDDEELRKIFEPYG-AITSAKVMRD 373
>gi|18150431|gb|AAL61622.1|AF414188_1 FCA gamma [Brassica napus]
Length = 715
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 17/176 (9%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+ A+EE++R E G+V EV +KDK +G+ +G FV + + E A +AI
Sbjct: 103 KLFVGSVPRTATEEEVRPFFEQHGNVLEVAFIKDKRTGQQQGCCFVKYATSEDADRAIRA 162
Query: 168 LHSK-ELKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
LH++ L G T +R + + + +LF+G++ K TE+E ++ G VE
Sbjct: 163 LHNQITLPGGTGLVQVRYADGERERIGAVEFKLFVGSLNKQATENEVEELFLQFG-RVED 221
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTPTI-SWADPK 270
+ L++D ++RG FV Y + A + LN + + G N P I +ADPK
Sbjct: 222 VYLMRDEYR--QSRGCGFVKYSSKETA-MAAIDGLNGTYTMRGCNQPLIVRFADPK 274
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 125/261 (47%), Gaps = 20/261 (7%)
Query: 102 LPPNGS--EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
+PP+ S +++G L +D +E L ++ +G V +R+ +D + +S G+A+V++ +
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 160 FAKKAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVG 211
A++A+D L+ +KG+ R S +F+ N+ K G
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFG 128
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
+ + ++ D S+N G FV Y + A + +K+ +L + KS
Sbjct: 129 -NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKV--NGMQLGSKNVYVGHFIKKS 183
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE 331
+ + ++ LYVKN PD + +K+LF +GE+T +++ + R F FI+Y++
Sbjct: 184 --ERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV-KSDNKNRKFCFINYSD 240
Query: 332 RSSALKAVKDTEKYEI--DGK 350
SA A+++ +I DGK
Sbjct: 241 ADSARNAMENLNGKKITEDGK 261
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +++ L++L EP G + ++MKD + +SKGF FV F + E A KA+
Sbjct: 409 GVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEANKAV 467
Query: 166 DELHSKELKGKTIRCSLSETK 186
E+H K + GK + L+E +
Sbjct: 468 TEMHLKIINGKPLYVGLAEKR 488
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 9/164 (5%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++G++ ++ TE ++ VG V +I + +D ++ G+++V Y+N A A+ +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVG-HVLSIRVCRDSVT-RKSLGYAYVNYHNLADAERALD 75
Query: 249 KMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ N K G + W S D S S ++VKN+ + + + F G
Sbjct: 76 TLNYTNIK--GQPARLMW----SHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGN 129
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ + + GK +++GF+HY + SA +A++ ++ K+
Sbjct: 130 ILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKN 173
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LY+KN+ D+ + + +KELF+ +G +T VM K + FGF+ + A KAV +
Sbjct: 412 LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 471
Query: 344 KYEIDGKSHLHFPVFV 359
I+GK P++V
Sbjct: 472 LKIINGK-----PLYV 482
>gi|449296279|gb|EMC92299.1| hypothetical protein BAUCODRAFT_38330 [Baudoinia compniacensis UAMH
10762]
Length = 634
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 26/193 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VF+ L ++L+ E +G V E +++KD+ SG SKG +V F+ +E +KAI +L
Sbjct: 249 VFVQQLAARLRTKELQAFFEAVGPVVEAQIVKDRVSGRSKGVGYVEFKDEESVQKAI-QL 307
Query: 169 HSKELKGKTIRCSLSETK--------------------NRLFIGNVPKNWTEDEFRKVIE 208
++L G I L+E + +RL++GN+ + TED+ + V E
Sbjct: 308 TGQKLLGIPIIAQLTEAEKNRQARHTEGTATQSNGIPFHRLYVGNIHFSITEDDLKNVFE 367
Query: 209 DVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD 268
G +E ++L K+ Q R++G+ FV + + A A + +KM F+L G + +
Sbjct: 368 PFGE-LEFVQLQKEEQ--GRSKGYGFVQFIDPAQAKEALEKM--NGFELAGRPIRVGLGN 422
Query: 269 PKSTPDHSAAASQ 281
K TP+ + + Q
Sbjct: 423 DKFTPESTQSLLQ 435
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
+ +F+ + E + E VGP VE +++KD + R++G +V + + +
Sbjct: 246 RRTVFVQQLAARLRTKELQAFFEAVGPVVEA-QIVKD-RVSGRSKGVGYVEFKD----EE 299
Query: 246 SRQKMLNANFKLDGNTPTISW---ADPKSTPDHS-AAASQVKA-----LYVKNIPDNTST 296
S QK + + P I+ A+ H+ A+Q LYV NI + +
Sbjct: 300 SVQKAIQLTGQKLLGIPIIAQLTEAEKNRQARHTEGTATQSNGIPFHRLYVGNIHFSITE 359
Query: 297 EKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+ +K +F+ GE+ V + + G+ + +GF+ + + + A +A++ +E+ G+
Sbjct: 360 DDLKNVFEPFGELEFVQLQKEEQGRSKGYGFVQFIDPAQAKEALEKMNGFELAGR 414
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L P G + +R+ +D + S G+A+V+F+ A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GN+ KN E K + D I K
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ ++G+ FV + A+ + + M N D + K + + A +
Sbjct: 131 VCDEKGSKGYGFVHFETQEAANRAIETM-NGMLLNDRKVFVGHFKSRKEREVEFGSKAMK 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+KN ++ + EK+KE+F G V VM K R FGF++YA A KAV
Sbjct: 190 FTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVN 249
Query: 341 DTEKYEIDGK 350
+ EI+GK
Sbjct: 250 EMNGKEINGK 259
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 130/279 (46%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI + + + L D G++ +++ D++ SKG+ FV F ++E A +AI+ +
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDEKG--SKGYGFVHFETQEAANRAIETM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N +++T+++ ++V G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN-ANFK-LDGNTPTISWADPK-- 270
++ ++KD + R+RGF FV Y ++ A QK +N N K ++G + A +
Sbjct: 219 -SVRVMKDEKG--RSRGFGFVNYAHHEDA----QKAVNEMNGKEINGKILYVGRAQKRLE 271
Query: 271 STPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ Q+K LYVKN+ D+ E++++ F +G +T + S
Sbjct: 272 RQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGSQ 331
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 332 SKGFGFVCFSSPEEATKAVT-----EMNGRIVATKPLYV 365
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ V+I +D ++E L+++ G VR+MKD E G S+GF FV++ E A+KA++
Sbjct: 191 TNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKD-EKGRSRGFGFVNYAHHEDAQKAVN 249
Query: 167 ELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDE 202
E++ KE+ GK + ++ + L++ N+ + ++
Sbjct: 250 EMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDER 309
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
RK G TI K + S+++GF FV +
Sbjct: 310 LRKEFAPYG----TITSAKVMTDGSQSKGFGFVCF 340
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M D +SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTD--GSQSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ +
Sbjct: 351 TEMNGRIVATKPLYVALAQRR 371
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 125/267 (46%), Gaps = 23/267 (8%)
Query: 98 QLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS 157
Q + P S +++G L KD +E L +L +G V +R+ +D + S G+A+V++ S
Sbjct: 14 QPASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNS 73
Query: 158 K---EFAKKAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKV 206
+ A +A++ L+ + GK +R S +FI N+ K
Sbjct: 74 ALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDT 133
Query: 207 IEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTIS 265
G + + ++ D S +G+ FV + + A AD + Q + N K ++G +
Sbjct: 134 FSAFGK-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTV---NQKEIEGKIVYVG 187
Query: 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDF 324
++ + ++VKN+P + +++ ++ HGE+T VVM K G + F
Sbjct: 188 PFQKRADRPQDVYTN----VFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGF 243
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGKS 351
GFI++ + SA K V+ + E+ GK+
Sbjct: 244 GFINFKDAESAAKCVEYLNEREMSGKT 270
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 28/270 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D +G SKG+ FV F + A +AI +
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQAAADRAIQTV 174
Query: 169 HSKELKGKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
+ KE++GK + + + +F+ N+P + +DE K+ + G + + ++
Sbjct: 175 NQKEIEGKIVYVGPFQKRADRPQDVYTNVFVKNLPADIGDDELGKMATEHGE-ITSAVVM 233
Query: 221 KDPQNPSRNRGFSFVLYYNN----ACADYSRQKMLNANFKLDGNTP--TISWADPKSTPD 274
KD + S+ GF F+ + + C +Y ++ ++ G T A + +
Sbjct: 234 KDDKGGSK--GFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAE 291
Query: 275 HSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHY 329
S +K LYVKN+ D + ++ELF G +T VM G + FGF+ +
Sbjct: 292 ESKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCF 351
Query: 330 AERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
A +AV + + GK P++V
Sbjct: 352 TSHDEATRAVTEMNGKMVKGK-----PLYV 376
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 28/158 (17%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VF+ LP D +++L + G++ +MKD + G SKGF F++F+ E A K ++
Sbjct: 201 TNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGG-SKGFGFINFKDAESAAKCVE 259
Query: 167 ELHSKELKGKTIRCSLSETKN------------------------RLFIGNVPKNWTEDE 202
L+ +E+ GKT+ ++ K L++ N+ +D
Sbjct: 260 YLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDEVDDDA 319
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
R++ + G + + +++KD +++GF FV + ++
Sbjct: 320 LRELFANSGT-ITSCKVMKD--GSGKSKGFGFVCFTSH 354
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L + ++ LR+L G + ++MKD SG+SKGF FV F S + A +A+
Sbjct: 303 GMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDG-SGKSKGFGFVCFTSHDEATRAV 361
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ K +KGK + +L++ K+
Sbjct: 362 TEMNGKMVKGKPLYVALAQRKD 383
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 112/290 (38%), Gaps = 64/290 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KM 217
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
VM G K FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|7670536|dbj|BAA95118.1| Etr-1 [Danio rerio]
Length = 452
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 85/141 (60%), Gaps = 10/141 (7%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DL+ + E G ++E+ ++KDK +G KG AF+++ ++E A KA +
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 168 LH-SKELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
LH K L G + I+ ++++ R LF+G + K ++ + RK+ E G +E ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFG-SIEECTVL 126
Query: 221 KDPQNPSRNRGFSFVLYYNNA 241
+ P S +G +FV Y +NA
Sbjct: 127 RGPDGAS--KGCAFVKYQSNA 145
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ ++ + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 364 PEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQA 423
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 424 AIQAMNGFQIGMKRLKVQLKRPKD 447
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K S+ D+R + EP G + E +++ + G SKG AFV ++S A+ AI
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISA 153
Query: 168 LH-SKELKGKT 177
LH S+ L G +
Sbjct: 154 LHGSRTLPGAS 164
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 28/263 (10%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L ++ PIG V +R+ +D S +S G+A+V++ E +KA
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGN----VPKNWTEDEFRKVIEDVGP 212
I+EL+ ++G+ R S+ +FI N + D F + +
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC 169
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
V T E +++ F FV Y A+ + + N N L N + S
Sbjct: 170 KVATDEF-------GQSKCFGFVHY---ETAEAAEAAIENVNGMLL-NDREVFVGKHISK 218
Query: 273 PDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFI 327
D + ++KA +YVKNI N S E ++LF G++T + + + GK + FGF+
Sbjct: 219 KDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFV 278
Query: 328 HYAERSSALKAVKDTEKYEIDGK 350
++ + SA+KAV++ EI+G+
Sbjct: 279 NFEDHESAVKAVEELNDKEINGQ 301
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + SEE L P G + + L KD++ G+SKGF
Sbjct: 218 KKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GKSKGFG 276
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F E A KA++EL+ KE+ G+ I ++ K
Sbjct: 277 FVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKK 311
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G+SK F FV + + E A+ AI+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ N++E+ F K+ G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-I 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV + ++ A + +++ + +++G + A K
Sbjct: 260 TSIYLEKD--QDGKSKGFGFVNFEDHESAVKAVEELNDK--EINGQKIYVGRAQKKRERL 315
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ A Q L+VKN+ D +EK++E F+ G +T + ++GK
Sbjct: 316 EELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ + A KA+ + I+GK P++V
Sbjct: 376 KGFGFVCFTTPEEATKAITEMNTRMINGK-----PLYV 408
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + +P G + ++M D E+G+SKGF FV F + E A KAI
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAI 393
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++++ + GK + +L++ K
Sbjct: 394 TEMNTRMINGKPLYVALAQRK 414
>gi|156352255|ref|XP_001622676.1| predicted protein [Nematostella vectensis]
gi|156209270|gb|EDO30576.1| predicted protein [Nematostella vectensis]
Length = 455
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 97/173 (56%), Gaps = 12/173 (6%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N ++F+G +P+ E+DLR + EP G ++E+ ++KDK +G+ KG AF++F S++ A
Sbjct: 18 NSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKGCAFLTFCSRDACNAA 77
Query: 165 IDELHSKE-LKGK----TIRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
LH K+ L G ++ + SETK+ +LF+G + K+ E++ R + G +E
Sbjct: 78 QKHLHEKKTLPGMHHPIQVKPADSETKSDDRKLFVGMISKHAKEEDLRVMFSPFGT-IEE 136
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP-TISWAD 268
+ ++++ S ++G +F+ + N A + M N+ ++P + +AD
Sbjct: 137 LTVLRNAD--STSKGCAFIKFANRMQAQNAIATMHNSTTMEGCSSPLVVKFAD 187
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+GS +FI LP++ ++ DL +P G V ++ DK++ SK F FVS+ + A+
Sbjct: 367 PDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQN 426
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L K
Sbjct: 427 AIQHMNGFQIGAKRLKVQLKRPK 449
>gi|391344304|ref|XP_003746441.1| PREDICTED: ELAV-like protein 4-like [Metaseiulus occidentalis]
Length = 394
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 97/203 (47%), Gaps = 24/203 (11%)
Query: 41 GNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLL 100
GN+ + D +Y+ + G + QS ++ P P+ G E K
Sbjct: 18 GNYRTSMPDLDYEMN--GIENQAQS----QSQSPGPQTNGLHSPSQQAGAGEDSK----- 66
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
+ + + LP+ ++E++R L IG+V +L++DK +G+S G+ FV++ E
Sbjct: 67 ------TNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVCAEA 120
Query: 161 AKKAIDELHSKELKGKTIRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGPGV 214
A+KAI+ L+ L+ KTI+ S + + L++ +PK+ T+ + ++ G G+
Sbjct: 121 AEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKSMTQQDLEQLFAPYG-GI 179
Query: 215 ETIELIKDPQNPSRNRGFSFVLY 237
T ++ D ++G FV +
Sbjct: 180 ITSRILCDNITAGLSKGVGFVRF 202
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
++K L + +P+ T++E R + +G VE+ +LI+D + ++ G+ FV N CA
Sbjct: 64 DSKTNLIVNYLPQTMTQEEIRSLFSSIGE-VESCKLIRD-KVTGQSLGYGFV---NYVCA 118
Query: 244 DYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302
+ + + + N +L T +S+A P S+ A + LYV +P + + + +++L
Sbjct: 119 EAAEKAINTLNGLRLQNKTIKVSYARP------SSEAIKGANLYVSGLPKSMTQQDLEQL 172
Query: 303 FQRHGEV--TKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
F +G + ++++ +G + GF+ + +R A +A+K
Sbjct: 173 FAPYGGIITSRILCDNITAGLSKGVGFVRFDQRVEAERAIK 213
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A+ G +F+ L D E L L P G V V++++D ++ + KGF FV+ + +
Sbjct: 306 AINGTGWCIFVYNLAPDTEENLLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDE 365
Query: 161 AKKAIDELHSKELKGKTIRCSLSETKNR 188
A AI L+ L + ++ S K +
Sbjct: 366 AVVAIQTLNGYTLGNRVLQVSFKTNKGK 393
>gi|170585852|ref|XP_001897696.1| RNA recognition motif containing protein [Brugia malayi]
gi|312066609|ref|XP_003136351.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|158595003|gb|EDP33580.1| RNA recognition motif containing protein, putative [Brugia malayi]
gi|307768478|gb|EFO27712.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|402585724|gb|EJW79663.1| RNA-binding protein [Wuchereria bancrofti]
Length = 300
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GG+ D + EDL G+V + ++ D+ +G S+GFAFV F + E + A++
Sbjct: 39 KIFVGGIAYDVTNEDLSQYFSQYGEVAQAQVKYDRNTGRSRGFAFVEFTTGEACRAALN- 97
Query: 168 LHSKELKGKTIRCSLSETK--NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
+ LKGKT+ ++++ ++F+G +P + E+E R E G VE IE D Q
Sbjct: 98 AREQSLKGKTVEVKPAKSRENKKVFVGGLPADHPEEELRAHFEQYGK-VEDIEWPFDKQT 156
Query: 226 PSRNRGFSFVLY 237
+R R F+F+++
Sbjct: 157 KAR-RNFAFIVF 167
>gi|42476252|ref|NP_571569.2| CUGBP Elav-like family member 3 [Danio rerio]
gi|152013393|sp|Q9IBD1.2|CELF3_DANRE RecName: Full=CUGBP Elav-like family member 3; Short=CELF-3;
AltName: Full=Bruno-like protein 1; AltName:
Full=CUG-BP- and ETR-3-like factor 3; AltName:
Full=ELAV-type RNA-binding protein 1; Short=ETR-1;
AltName: Full=RNA-binding protein BRUNOL-1; AltName:
Full=Trinucleotide repeat-containing gene 4 protein
gi|38173873|gb|AAH60923.1| Trinucleotide repeat containing 4 [Danio rerio]
Length = 452
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 85/141 (60%), Gaps = 10/141 (7%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DL+ + E G ++E+ ++KDK +G KG AF+++ ++E A KA +
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 168 LH-SKELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
LH K L G + I+ ++++ R LF+G + K ++ + RK+ E G +E ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFG-SIEECTVL 126
Query: 221 KDPQNPSRNRGFSFVLYYNNA 241
+ P S +G +FV Y +NA
Sbjct: 127 RGPDGAS--KGCAFVKYQSNA 145
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ ++ + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 364 PEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQA 423
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 424 AIQAMNGFQIGMKRLKVQLKRPKD 447
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K S+ D+R + EP G + E +++ + G SKG AFV ++S A+ AI
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISA 153
Query: 168 LH-SKELKGKT 177
LH S+ L G +
Sbjct: 154 LHGSRTLPGAS 164
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 19/260 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 175 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 230
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 288
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+ +A AV+ +YE+ G+
Sbjct: 289 DHEAASAAVEALNEYELKGQ 308
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +D ++E+ R L E G++ L +D E+G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F E A A++ L+ ELKG+ +L++G K E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE 330
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
K G+SKGF FV F + + A KA+ E++ + + GK + +L++ K+
Sbjct: 437 KHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKD 482
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 19/260 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 71 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 130
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 131 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 190
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 191 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 246
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 247 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 304
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+ +A AV+ +YE+ G+
Sbjct: 305 DHEAASAAVEALNEYELKGQ 324
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +D ++E+ R L E G++ L +D E+G+S+GF
Sbjct: 240 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 299
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F E A A++ L+ ELKG+ +L++G K E+E RK E
Sbjct: 300 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE 346
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
K G+SKGF FV F + + A KA+ E++ + + GK + +L++ K+
Sbjct: 453 KHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKD 498
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 112/290 (38%), Gaps = 64/290 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
VM G K FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 131/282 (46%), Gaps = 46/282 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRCS-----------LSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ + + E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+S + FGF+ ++ A KAV E++G+ + P++V
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVT-----EMNGRIIVTKPLYV 367
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 126/254 (49%), Gaps = 19/254 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMP-PGKSGKRDFGFIHYAERSSAL 336
+YVKN ++ + +K+K++F+++G +T KV++ GKS R FGF+ + + +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKS--RGFGFVAFEDPDAAE 246
Query: 337 KAVKDTEKYEIDGK 350
+AV E++GK
Sbjct: 247 QAV-----LELNGK 255
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMM--EEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 122/258 (47%), Gaps = 25/258 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D SE L ++ +G V +R+ +D + S +A++++ + A++A+D
Sbjct: 8 SSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALD 67
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L++ +KGK R S+ L FI N+ K G + + +
Sbjct: 68 TLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFG-NILSCK 126
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQK---MLNANFKLDGNTPTISWADPKSTPDH 275
++ D N S +GF FV Y + A+ + K M+ N K+ + P +
Sbjct: 127 VVTDETNTS--KGFGFVHYESQESAEKAIAKVNGMMINNQKV--------FVGPFKSSKE 176
Query: 276 SAAASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
A +VK +++KN+ ++ S +++ +L Q HG++T + + + GK + FGF ++
Sbjct: 177 RGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHA 236
Query: 333 SSALKAVKDTEKYEIDGK 350
+A AV++ GK
Sbjct: 237 DAAKGAVENENGKMFSGK 254
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 123/270 (45%), Gaps = 31/270 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+ SKGF FV + S+E A+KAI ++
Sbjct: 98 IFIKNLDKTVDHKALYDTFSAFGNILSCKVVTD-ETNTSKGFGFVHYESQESAEKAIAKV 156
Query: 169 HSKELKGKTI----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+ + + + R + E K +FI N+ ++ +E + +++ G + +
Sbjct: 157 NGMMINNQKVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHG-KITNL 215
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTPTISWADPKSTPDHS 276
++ D + S+ GF+ N AD ++ + N N K+ G + A K +
Sbjct: 216 CIMTDEKGKSKGFGFA-----NFEHADAAKGAVENENGKMFSGKVIYVGRAQKKLEREAE 270
Query: 277 A-----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHY 329
Q LY+KN+ D+ ++K++ F +G +T KV+ S + FGF+ Y
Sbjct: 271 LKHKFETKYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCY 330
Query: 330 AERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ A KAV + + K P++V
Sbjct: 331 STPDEASKAVAEMHGRMVGSK-----PLYV 355
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VFI L +D SE+ L DL + G + + +M D E G+SKGF F +F + AK A++
Sbjct: 186 TNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTD-EKGKSKGFGFANFEHADAAKGAVE 244
Query: 167 ELHSKELKGKTIRCSLS--------------ETKNR---LFIGNVPKNWTEDEFRKVIED 209
+ K GK I + ETK + L+I N+ + D+ R
Sbjct: 245 NENGKMFSGKVIYVGRAQKKLEREAELKHKFETKYQGVNLYIKNLDDSIDSDKLRATFSA 304
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLY 237
G + + ++++D + S ++GF FV Y
Sbjct: 305 YG-TITSSKVMRDDKG-SSSKGFGFVCY 330
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L + LR G + ++M+D + SKGF FV + + + A KA+
Sbjct: 281 GVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAV 340
Query: 166 DELHSKELKGKTIRCSLSETK 186
E+H + + K + + ++ K
Sbjct: 341 AEMHGRMVGSKPLYVAFAQRK 361
>gi|349942059|dbj|GAA29907.1| ELAV like protein 2/3/4 [Clonorchis sinensis]
Length = 645
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 74 DTPH-VEEEEKPTASVGEDEKDKHAQLL-------ALPPNGSEVFIGGLPKDASEEDLRD 125
TPH + KP AS K++ + + P N + + I LP + S+E++R
Sbjct: 79 STPHALATCTKPFASTSPTVTSKNSGPVNNTAVTNSPPENKTNLIINYLPPNMSQEEVRA 138
Query: 126 LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185
L IG+V +L+++K SGES G+AFV F A KAI L+ L+ KT++ SL+
Sbjct: 139 LFSSIGEVESCKLVREKTSGESLGYAFVKFYDPLDAGKAIKTLNGLRLQNKTVKVSLARP 198
Query: 186 KN------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+ L+I +P+ T+ E K+ G + T ++ D + +RG +F+ Y
Sbjct: 199 SSEAIKGANLYICGLPRKMTQPELEKLFSACG-HIITARILYDTKT-GLSRGVAFIRY 254
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
AL G +F+ L D E L L P G V V++++D + + KGF FV+ + E
Sbjct: 524 ALTATGWCIFVYNLAPDTEESTLWQLFGPFGAVQTVKVIRDPITSKCKGFGFVTMSNYEE 583
Query: 161 AKKAIDELHSKELKGKTIRCSLSETKN 187
A AI L+ L + ++ S T N
Sbjct: 584 ALLAIHSLNGFNLGNRVLQVSFKTTPN 610
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 17/254 (6%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L +E L +L IG V +R+ +D + S G+A+V++ ++A++EL
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 169 HSKELKGKTIRCSLSETKNRL---FIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ +KG+ R S+ L GNV KN K + D I K Q
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 174
Query: 225 NPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQV 282
+ + N +G+ FV Y A+ + Q + N N L+ + PK D + ++
Sbjct: 175 DENANSKGYGFVHY---ETAEAANQAIKNVNGMLLNEKKVFVGHHIPKK--DRMSKVEEM 229
Query: 283 KA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP-GKSGK-RDFGFIHYAERSSAL 336
KA +YVKNI T+ + +ELF+++G++T + +SGK R FGF++Y A
Sbjct: 230 KANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAY 289
Query: 337 KAVKDTEKYEIDGK 350
KAV++ + G+
Sbjct: 290 KAVEELNDSDFKGQ 303
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 31/228 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+ SKG+ FV + + E A +AI +
Sbjct: 143 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-ENANSKGYGFVHYETAEAANQAIKNV 201
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ T++EFR++ E G +
Sbjct: 202 NGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELFEKYGD-I 260
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L D ++ +NRGF FV Y + A + +++ +++FK G + A K +
Sbjct: 261 TSASLAHDNES-GKNRGFGFVNYIRHEDAYKAVEELNDSDFK--GQKLYVGRAQKKHERE 317
Query: 275 -----HSAAASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
AA Q K+ LYVKN+ D ++++++F+ +G +T
Sbjct: 318 EELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGAIT 365
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 77/155 (49%), Gaps = 25/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ +++ + N + +++ + + ++ + R+L E GD+ L D ESG+++GF
Sbjct: 219 KKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFG 278
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV++ E A KA++EL+ + KG+ + ++ K+
Sbjct: 279 FVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGV 338
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L++ N+ +DE RKV E G + + ++++D
Sbjct: 339 NLYVKNLADEIDDDELRKVFEPYG-AITSAKVMRD 372
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
G+SKGF FV F + + A KA+ EL+ K + GK + +L++ K
Sbjct: 426 GKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRK 467
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 19/260 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 175 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 230
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 288
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+ +A AV+ +YE+ G+
Sbjct: 289 DHEAASAAVEALNEYELKGQ 308
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +D ++E+ R L E G++ L +D E+G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F E A A++ L+ ELKG+ +L++G K E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE 330
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
K G+SKGF FV F + + A KA+ E++ + + GK + +L++ K+
Sbjct: 437 KHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKD 482
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 131/282 (46%), Gaps = 46/282 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRCS-----------LSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ + + E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+S + FGF+ ++ A KAV E++G+ + P++V
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVT-----EMNGRIIVTKPLYV 367
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 126/254 (49%), Gaps = 19/254 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMP-PGKSGKRDFGFIHYAERSSAL 336
+YVKN ++ + +K+K++F+++G +T KV++ GKS R FGF+ + + +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKS--RGFGFVAFEDPDAAE 246
Query: 337 KAVKDTEKYEIDGK 350
+AV E++GK
Sbjct: 247 QAV-----LELNGK 255
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMM--EEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 19/260 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 175 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 230
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 288
Query: 331 ERSSALKAVKDTEKYEIDGK 350
+ +A AV+ +YE+ G+
Sbjct: 289 DHEAASAAVEALNEYELKGQ 308
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +D ++E+ R L E G++ L +D E+G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F E A A++ L+ ELKG+ +L++G K E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE 330
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F + + A KA+ E++ + + GK + +L++ K+
Sbjct: 439 GKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKD 481
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + A Q+ +N + N + KS + + A
Sbjct: 131 VCDEHGSRGFGFVHFETYEAA----QQAINTMNGMLLNDRKVFVGHFKSRRERAAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V + SG+ R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-SSGRSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FV+F E A+KA+ ++ KE+ G+ + S ++ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKR 269
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 122/278 (43%), Gaps = 40/278 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETYEAAQQAINTM 158
Query: 169 HSKELKGKTI--------RCSLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + R +E R +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFG-KM 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D + R+R F FV + + + +++ +++ N K + G S A +
Sbjct: 218 LSVKVMRD--SSGRSRCFGFVNFEKH---EEAQKAVVHMNGKEVSGRLLYASRAQKRVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q LYVKN+ D+ K+++ F +G +T + S
Sbjct: 273 QNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMTEGSHS 332
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 KGFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L + LR P G + ++M E SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMT--EGSHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 24/256 (9%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L D ++ L DL + V VR+ +D + +S G+ +V+F + A KAID L
Sbjct: 26 LYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDVL 85
Query: 169 HSKELKGKTIRC--SLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
+ L GKTIR S+ + R +FI N+ K G + + ++
Sbjct: 86 NFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFG-NILSCKIA 144
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG---NTPTISWADPKSTPDHSA 277
D S+ GF S + NA KL+G N + + D +
Sbjct: 145 TDASGQSKGHGF---------VQFESEESAQNAIDKLNGMLINDKQVYVGPFQRKQDRES 195
Query: 278 AASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
A S K +YVKN+ + T+ +K +F +G +T V+ GK + FGF+++A
Sbjct: 196 ALSGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVED 255
Query: 335 ALKAVKDTEKYEIDGK 350
A KAV+ DGK
Sbjct: 256 AAKAVEALNGKNFDGK 271
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 126/280 (45%), Gaps = 40/280 (14%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VFI L K + L D G++ ++ D SG+SKG FV F S+E A+ AID
Sbjct: 112 ANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDA-SGQSKGHGFVQFESEESAQNAID 170
Query: 167 ELHSKELKGKTIRC-----------SLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+L+ + K + +LS TK N +++ N+ + TE + + + + G +
Sbjct: 171 KLNGMLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYG-AI 229
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+ +++D +++GF FV + N A + + + NF DG + A KS
Sbjct: 230 TSAVVMRDVDG--KSKGFGFVNFANVEDAAKAVEALNGKNF--DGKEWYVGKAQKKSERE 285
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKS 319
+ + LY+KN+ D+ E+++ELF G +T VM P G S
Sbjct: 286 LELKERNEQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGIS 345
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R GF+ ++ A A+ + + GK P++V
Sbjct: 346 --RGSGFVAFSIAEGASWALGEMNGKMVAGK-----PLYV 378
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G+ ++I L +E+LR+L G + ++M+D SG S+G FV+F E A A
Sbjct: 304 HGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRD-PSGISRGSGFVAFSIAEGASWA 362
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ K + GK + +L++ K
Sbjct: 363 LGEMNGKMVAGKPLYVALAQRK 384
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV ED K + D I K
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ ++ + N + KS + A
Sbjct: 131 VCDDHGSRGFGFVHFETHEAA----QQAISTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A+ +YVKN+P + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV D ++ G+
Sbjct: 247 AVMDMNGMQVSGR 259
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP E L+DL G + V++M+D +SG S+G
Sbjct: 174 KSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRD-DSGHSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ +++ ++ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVMDMNGMQVSGRLL 261
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 119/279 (42%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ +++ D S+GF FV F + E A++AI +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAISTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGK-M 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKS-- 271
++++++D + +RGF FV + + + +++ +++ N ++ G + A +
Sbjct: 218 LSVKVMRD--DSGHSRGFGFVNFEKH---EEAQKAVMDMNGMQVSGRLLYVGRAQKRGER 272
Query: 272 ----------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
T Q LYVKN+ D+ EK+++ F +G +T VM G
Sbjct: 273 QNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
K FGF+ ++ A KAV + I K P++V
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIIGTK-----PLYV 365
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIIGTKPLYVALAQRK 371
>gi|307940740|gb|ADN95984.1| G-strand specific single-stranded telomere-binding protein 2
[Nicotiana tabacum]
Length = 337
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIGGL K+ + E E G++ + +MKD+ +G +GF F+++ I E
Sbjct: 16 KIFIGGLAKETTLEQFVKYFEKYGEIIDSVIMKDRHTGRPRGFGFITYEDPSVVDTVIAE 75
Query: 168 LH-----SKELKGKTIRCSLSETKN----RLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
H E+K +TI +E+K+ ++F+G +P TEDEF+ G V E
Sbjct: 76 NHIINDKQVEIK-RTIPKGSAESKDFKTKKIFVGGIPTTMTEDEFKNFFSKFGK-VTEYE 133
Query: 219 LIKDPQNPSRNRGFSFVLYYN-----NACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273
+I+D R+RGF F+++ N N A+ +R M+ ++ P ++P S P
Sbjct: 134 IIRD-HVSKRSRGFGFIVFDNEQVVDNLLAEGNRTDMMGTQVEIKKAEPK-KPSNPASAP 191
Query: 274 DHSA 277
+ +
Sbjct: 192 AYGS 195
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
++FIG + K T ++F K E G ++++ ++KD ++ R RGF F+ Y + + D
Sbjct: 15 GKIFIGGLAKETTLEQFVKYFEKYGEIIDSV-IMKD-RHTGRPRGFGFITYEDPSVVD-- 70
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
++ N ++ I PK + + + + K ++V IP + ++ K F +
Sbjct: 71 --TVIAENHIINDKQVEIKRTIPKGSAE--SKDFKTKKIFVGGIPTTMTEDEFKNFFSKF 126
Query: 307 GEVT--KVVMPPGKSGKRDFGFIHY 329
G+VT +++ R FGFI +
Sbjct: 127 GKVTEYEIIRDHVSKRSRGFGFIVF 151
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 94 DKHAQLLALPPNGS---------EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES 144
DK ++ P GS ++F+GG+P +E++ ++ G V E +++D S
Sbjct: 81 DKQVEIKRTIPKGSAESKDFKTKKIFVGGIPTTMTEDEFKNFFSKFGKVTEYEIIRDHVS 140
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
S+GF F+ F +++ + E + ++ G + +E K
Sbjct: 141 KRSRGFGFIVFDNEQVVDNLLAEGNRTDMMGTQVEIKKAEPK 182
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 24/249 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + + L D+ +G V VR+ +D S +S G+A+V++ ++ A +A++
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 167 ELHSKELKGKTIRCSLS--------ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + GK IR S +FI N+ K+ G + + +
Sbjct: 95 LLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG-NILSCK 153
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG---NTPTISWADPKSTPDH 275
+ DP S RG+ FV + D S Q ++ KL+G N + D
Sbjct: 154 IATDPSGES--RGYGFVQFEK----DESAQSAID---KLNGMLINDKKVFVGPFVRKQDR 204
Query: 276 SAAASQVK--ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
+S +K +YVKN+ D + +++KE+F ++G +T V+ GK R FGF+++
Sbjct: 205 ENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENA 264
Query: 333 SSALKAVKD 341
+A +AV++
Sbjct: 265 DAAAQAVQE 273
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D E+G+SKGF +V F E A +AID L
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I +K ++I N+ T+ EF +++ G
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGK-T 242
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++ L + P+ N+GF FV + N+ A +++ N FK G ++ A K
Sbjct: 243 DSVVLERTPE--GENKGFGFVNFVNHEDAVKCVEELNNTEFK--GQPLYVNRAQKKYERQ 298
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T A Q L++KN+ D+ +K++E F +G +T + ++GK
Sbjct: 299 QELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKS 358
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 359 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 391
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 19/263 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F + AK AI+
Sbjct: 35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIE 94
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
+L+ +KGK R S+ L GN+ KN D K + D I K
Sbjct: 95 KLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKV 154
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ + +++GF +V + D S + ++A + N I S + + +
Sbjct: 155 ATDETGKSKGFGYVHFEE----DESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEE 210
Query: 282 VKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
+KA +Y+KNI T+ ++ +EL + G+ VV+ G+ + FGF+++ A+
Sbjct: 211 MKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAV 270
Query: 337 KAVKDTEKYEIDGKSHLHFPVFV 359
K V++ E G+ P++V
Sbjct: 271 KCVEELNNTEFKGQ-----PLYV 288
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L ++ L + P G + ++M E+G+SKGF FV F + E A KAI
Sbjct: 318 GINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTT-ENGKSKGFGFVCFSTPEEATKAI 376
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 377 TEKNQQIVAGKPLYVAIAQRK 397
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ ++ + N + V+I + + ++++ +L G V L + E GE+KGF
Sbjct: 201 KKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPE-GENKGFG 259
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F + E A K ++EL++ E KG+ + + ++ K
Sbjct: 260 FVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKK 294
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 VCDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 113/290 (38%), Gaps = 64/290 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KM 217
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
VM G K FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 VCDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 113/290 (38%), Gaps = 64/290 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KM 217
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
VM G K FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|34555648|gb|AAQ74972.1| flowering time control protein isoform OsFCA-2 [Oryza sativa Indica
Group]
Length = 649
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 17/179 (9%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N ++FIG +P+ A+E+D+R L E GDV EV L+KD+++GE +G FV + + E A++A
Sbjct: 120 NYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERA 179
Query: 165 IDELHSK-ELKGKT----IRCSLSE------TKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
I LH++ L G +R + E +++LF+ ++ K T E ++ G
Sbjct: 180 IRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYG-H 238
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPK 270
VE + ++KD SR GF A A S L+ N+ + G I +ADPK
Sbjct: 239 VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMS---ALSGNYVMRGCEQPLIIRFADPK 294
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIG+VP+ TED+ R + E+ G VE + LIKD + +G FV Y + A+ +
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVE-VALIKD-RKTGEQQGCCFVKYATSEEAERAI 180
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + H A + L+V ++ + ++I+E+F
Sbjct: 181 RALHN-QYTLPGAMGPIQVRYADGERE-RHGAIEHK---LFVASLNKQATAKEIEEIFAP 235
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
+G V V +M G R GF+ ++ R AL A+
Sbjct: 236 YGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAM 270
>gi|449468578|ref|XP_004151998.1| PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
gi|449509419|ref|XP_004163583.1| PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
Length = 436
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIGG+ D SEE LRD G+V + +M+DK +G +GF FV F + + +
Sbjct: 7 KLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSLLDQVLQD 66
Query: 168 LH-------------SKELKGKTIRCSLSETKN-----------RLFIGNVPKNWTEDEF 203
H S+E + + R ++ + ++F+G +P TED F
Sbjct: 67 KHTIDGRQVEAKRALSREEQQTSTRSGINNSGRSSGGSGYFRTKKIFVGGLPSALTEDGF 126
Query: 204 RKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
R+ E G V + ++ D QN R RGF F+ + N D
Sbjct: 127 RQYFESYGQ-VTDVVIMYD-QNTQRPRGFGFITFDNEDAVD 165
Score = 37.7 bits (86), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
L++ I +TS EK+++ F + GEV + V+M +G+ R FGF+ +++ S + ++D
Sbjct: 8 LFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSLLDQVLQD- 66
Query: 343 EKYEIDGK 350
K+ IDG+
Sbjct: 67 -KHTIDGR 73
>gi|50540190|ref|NP_001002562.1| CUGBP Elav-like family member 4 [Danio rerio]
gi|82235921|sp|Q6DGV1.1|CELF4_DANRE RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|49904554|gb|AAH76238.1| Zgc:92761 [Danio rerio]
Length = 520
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 84/142 (59%), Gaps = 11/142 (7%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DLR L E G ++E+ ++KD+ +G KG AF+++ ++E A KA
Sbjct: 48 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTA 107
Query: 168 LH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G + I+ +++++R LF+G + K ED+ R++ E G +E +
Sbjct: 108 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFG-SIEECTI 166
Query: 220 IKDPQNPSRNRGFSFVLYYNNA 241
++ P S +G +FV Y +A
Sbjct: 167 LRGPDGNS--KGCAFVKYSTHA 186
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ + +L + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 432 PEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQA 491
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 492 AIQSMNGFQIGMKRLKVQLKRPKD 515
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K E+D+R L E G + E +++ + G SKG AFV + + A+ AI
Sbjct: 136 KLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSTHAEAQAAISA 194
Query: 168 LHSKE 172
LH +
Sbjct: 195 LHGSQ 199
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 135/297 (45%), Gaps = 32/297 (10%)
Query: 64 QSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDL 123
QS N ND TP+ S +H+ + +++G L +E L
Sbjct: 36 QSESGNDNDASTPY---------SASPSTAAQHS---------ASLYVGELDPSVTEAML 77
Query: 124 RDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183
+L IG V +R+ +D + S G+A+V++ + ++A+++L+ +KG+ R S
Sbjct: 78 FELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTSIKGRPCRIMWS 137
Query: 184 E---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRN-RGFSFVLYY 238
+ + GNV KN K + D I K Q+ N +G+ FV Y
Sbjct: 138 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCKVAQDELGNSKGYGFVHY- 196
Query: 239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNT 294
A+ + Q + + N L N + + D + ++KA +Y+KNI ++
Sbjct: 197 --ETAEAANQAIKSVNGMLL-NDKKVFVGHHIAKRDRQSKLEEMKANFTNVYIKNIDESV 253
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
S E+ +LF+ +GEV + ++GK R FGF+++A SA KAV++ E GK
Sbjct: 254 SDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEELNDKEFHGK 310
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
++D+ ++L + N + V+I + + S+E+ L EP G+V + +D E+G+S+GF
Sbjct: 227 KRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRD-ENGKSRGFG 285
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F S E A KA++EL+ KE GK +L++G K E+E R+ E
Sbjct: 286 FVNFASHESAAKAVEELNDKEFHGK-----------KLYVGRAQKKHEREEELRRQYE 332
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
G+SKGF FV F + + A KA+ E++ K + GK + +L++ K
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRK 481
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 VCDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 113/290 (38%), Gaps = 64/290 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KM 217
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
VM G K FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|390176614|ref|XP_003736147.1| GA25725, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388858698|gb|EIM52220.1| GA25725, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 595
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +PK E LR++ E G V + +++DK +G SKG FV+F ++ A K
Sbjct: 137 PDNIKMFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFFTRRAALK 196
Query: 164 AIDELHS-KELKGK--TIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
A D LH+ K L G I+ ++++NR LF+G + K E++ RK+ E G +E
Sbjct: 197 AQDALHNVKTLAGMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-NIEE 255
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
+++D QN +++G +FV + A + + L+ N ++G T
Sbjct: 256 CTVLRD-QN-GQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCT 298
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 507 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 566
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 567 AIKAMNGFQVGTKRLKVQLKKPK 589
>gi|224112006|ref|XP_002316051.1| predicted protein [Populus trichocarpa]
gi|222865091|gb|EEF02222.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 17/177 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +P+ A+E D+R L E G+V EV L+KDK +G+ +G F+ + + E A +AI
Sbjct: 88 AKLFVGSVPRTATEMDIRPLFEEHGNVIEVALIKDKRTGQQQGCCFIKYATSEEADRAIR 147
Query: 167 ELHS-KELKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
LH+ + L G +R + L + +LF+G++ K TE E ++ G VE
Sbjct: 148 ALHNQRTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFTPYG-RVE 206
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPK 270
+ L++D SR GF + + A A + LN + + G T+ +ADPK
Sbjct: 207 DVYLMRDEMKQSRGCGFVKYSHRDMALAAING---LNGIYTMRGCEQPLTVRFADPK 260
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 119/252 (47%), Gaps = 18/252 (7%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ + ++ G L +E L +L IG V +R+ +D + S G+A+V+F+ A +A
Sbjct: 30 SATSLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARA 89
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
ID L+ + + GK IR S+ +FI N+ K G + +
Sbjct: 90 IDALNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFG-NIVS 148
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP-KSTPDH 275
++ D Q S +G+ FV + A + +K +N D + P + +
Sbjct: 149 AKVATDLQGQS--KGYGFVQFDTEEGAQSAIEK-VNGMLLNDKQV----YVGPFQKRNER 201
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ +YVKN+ ++ + EK++E+F++ G +T VV+ GK + FGF+ Y + +
Sbjct: 202 GGGPTTFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEA 261
Query: 335 ALKAVKDTEKYE 346
A K+V++ + Y+
Sbjct: 262 AGKSVEELDGYD 273
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 43/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K+ + L D G++ ++ D + G+SKG+ FV F ++E A+ AI+++
Sbjct: 122 IFIKNLDKEIDNKALYDTFAQFGNIVSAKVATDLQ-GQSKGYGFVQFDTEEGAQSAIEKV 180
Query: 169 HSKELKGKTI----------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+ L K + R T N +++ N+ ++ TE++ R+V E G + ++
Sbjct: 181 NGMLLNDKQVYVGPFQKRNERGGGPTTFNNVYVKNLHESVTEEKLREVFEKFG-ALTSVV 239
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++KD + +++GF FV Y + A S ++ L+ K++ + A KS +
Sbjct: 240 VMKDAEG--KSKGFGFVCYEDAEAAGKSVEE-LDGYDKIEDKAWVVCRAQKKSERE---- 292
Query: 279 ASQVKA-----------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+++KA LY+KN+ D K++ELF G +T VM
Sbjct: 293 -AELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDTAGA 351
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R F+ ++ A +AV E++GK P++V
Sbjct: 352 SRGSAFVAFSSADEATRAVT-----EMNGKMAGQKPLYV 385
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 32/185 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + V++ L + +EE LR++ E G + V +MKD E G+SKGF FV + E A
Sbjct: 205 PTTFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAE-GKSKGFGFVCYEDAEAAG 263
Query: 163 KAIDEL--HSKELKGKTIRCSLSETKNR-----------------------LFIGNVPKN 197
K+++EL + K + C + R L+I N+
Sbjct: 264 KSVEELDGYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDT 323
Query: 198 WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257
+ + R++ + G + + +++D S RG +FV + + AD + + + N K+
Sbjct: 324 VDDAKLRELFAEFGT-ITSCRVMRDTAGAS--RGSAFVAF---SSADEATRAVTEMNGKM 377
Query: 258 DGNTP 262
G P
Sbjct: 378 AGQKP 382
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ ++I L + LR+L G + R+M+D +G S+G AFV+F S + A +A+
Sbjct: 312 GANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDT-AGASRGSAFVAFSSADEATRAV 370
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K K + +L++ K
Sbjct: 371 TEMNGKMAGQKPLYVALAQRK 391
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 46/288 (15%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
LPP +++++G LP+ L L + G V V +++++E+G S+GFAFV+ + + A
Sbjct: 89 LPPRRTKLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEA 148
Query: 162 KKAIDELHSKELKGKTIRC---------------SLSETKNRLFIGNVPKNWTEDEFRKV 206
K AI++L +L G+ + S ET +LF+GN+ + ++ + +
Sbjct: 149 KSAIEKLQGSDLGGRDMIVNFPAKVLSKKKETDDSYIETPYQLFVGNLAWSVKKEILKSL 208
Query: 207 IEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN-----NACADYSRQKMLNANFKLDGNT 261
G V ++I + R F FV + +A ++ N K+
Sbjct: 209 FSQHG-NVSAAKVIYSGKG-GVPRAFGFVCLSSQSEMEDAIVSLHGKEFHGRNLKVRQAR 266
Query: 262 PTI----------SWADPKSTPDHSAAASQVKA--------LYVKNIPDNTSTEKIKELF 303
PT + A P + + S + VKA +YV N+ + + + ELF
Sbjct: 267 PTSKDMVVSDVEENIAKPSTMVEDSMTET-VKATFVGSAYGVYVSNLSLSVKNKALSELF 325
Query: 304 QRHGEVTKV-VMPPGKSGK-RDFGFIHY---AERSSALKAVKDTEKYE 346
+HG V V+ K+G+ R +GF+++ AE +A+ A+ E YE
Sbjct: 326 SQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAALDKKEFYE 373
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.309 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,274,852,619
Number of Sequences: 23463169
Number of extensions: 290002728
Number of successful extensions: 2688515
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 24393
Number of HSP's successfully gapped in prelim test: 20749
Number of HSP's that attempted gapping in prelim test: 1974684
Number of HSP's gapped (non-prelim): 389229
length of query: 360
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 217
effective length of database: 9,003,962,200
effective search space: 1953859797400
effective search space used: 1953859797400
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 77 (34.3 bits)