BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018143
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKA-LYVKNIPDNTSTEKIKELFQRHGEV--T 310
+ LD T + P +S V ++V IP + +++ LF++ G +
Sbjct: 132 GYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDL 191
Query: 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+++M P R + F+ + + +A +AVK +EI H+ + V
Sbjct: 192 RLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ L +EE L G + V+ +KD +AF+ F ++ A KA++E+
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391
Query: 169 HSKELKGKTIRCSLSE 184
+ K+L+G+ I ++
Sbjct: 392 NGKDLEGENIEIVFAK 407
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 158 bits (400), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDG 349
+++G
Sbjct: 391 MNGKDLEG 398
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKA-LYVKNIPDNTSTEKIKELFQRHGEV--T 310
+ LD T + P +S V ++V IP + +++ LF++ G +
Sbjct: 132 GYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDL 191
Query: 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+++M P R + F+ + + +A +AVK +EI H+ + V
Sbjct: 192 RLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ L +EE L G + V+ +KD +AF+ F ++ A KA++E+
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391
Query: 169 HSKELKGKTIRCSLSE 184
+ K+L+G+ I ++
Sbjct: 392 NGKDLEGENIEIVFAK 407
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 157 bits (398), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 247 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 342 TEKYEIDG 349
+++G
Sbjct: 301 MNGKDLEG 308
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
++V IP + +++ LF++ G + +++M P R + F+ + + +A +AVK
Sbjct: 74 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 133
Query: 343 EKYEIDGKSHLHFPVFV 359
+EI H+ + V
Sbjct: 134 NNHEIRSGKHIGVCISV 150
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ L +EE L G + V+ +KD +AF+ F ++ A KA++E+
Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 301
Query: 169 HSKELKGKTIRCSLSE 184
+ K+L+G+ I ++
Sbjct: 302 NGKDLEGENIEIVFAK 317
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAM 391
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 255 FKLDGNTPTISWADPKSTPDHSAAASQVKA-LYVKNIPDNTSTEKIKELFQRHGEV--TK 311
+ LD T + P +S + ++V IP + +++ LF++ G + +
Sbjct: 136 YTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLR 195
Query: 312 VVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
++M P R + FI + + +A +AVK + YEI HL + V
Sbjct: 196 LMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISV 243
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 147/253 (58%), Gaps = 12/253 (4%)
Query: 101 ALPP-NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKV 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 146/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 146/250 (58%), Gaps = 11/250 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGKS 351
IDG S
Sbjct: 293 GKCIDGAS 300
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 140/246 (56%), Gaps = 11/246 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E+ L L G ++E RLM + SGE++G+AFV + +KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIR 119
Query: 167 ELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E+ +GK I +S RLFIG++P+ ++E + ++ V GV + + +
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV+Y ++ A +R+K++ F+L G+T ++WA P+ D +VK L
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEE-TMQKVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F R+ G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMSVMN 292
Query: 344 KYEIDG 349
IDG
Sbjct: 293 GRLIDG 298
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 138/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 137/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKRSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK+A+
Sbjct: 72 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAV 130
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 131 RELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 190
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 191 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 249
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+
Sbjct: 250 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNSL 303
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 304 NGTELEGSC 312
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 141/245 (57%), Gaps = 11/245 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + ++E A++AI
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQRAIQL 104
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L + E++ GK I +S RLFIG++PK+ ++E ++ + V GV + + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 164
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF+FV Y ++ A +R+K++ F+L G+T + WA+P+ D +V+ LY
Sbjct: 165 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEE-TMQRVRVLY 223
Query: 287 VKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
V+N+ +T+ E ++ F + G V +V D+ FIH+ R AL A++
Sbjct: 224 VRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALESMNG 277
Query: 345 YEIDG 349
IDG
Sbjct: 278 KVIDG 282
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGKS 351
E++G
Sbjct: 302 NGTELEGSC 310
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 136/289 (47%), Gaps = 34/289 (11%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
+EE+ PT + E K + +G+ +++G L SE L D+ PIG V +R
Sbjct: 17 IEEQTAPTTTESETPK--------VETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIR 68
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRL 189
+ +D + S G+A+V+F E KAI++L+ +KGK R S+ +
Sbjct: 69 VCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI 128
Query: 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249
+I N+ + G + + ++ D S RGF FV + N + A
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFG-NILSCKVATDENGVS--RGFGFVHFENESDAR----- 180
Query: 250 MLNANFKLDG---NTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKEL 302
+A +DG N + A S D + +VKA +YVKNI TS E+ +EL
Sbjct: 181 --DAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEEL 238
Query: 303 FQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
F ++G++T V+ GK R FGF+++ + ++A KAV + + E G+
Sbjct: 239 FGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQ 287
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 120/278 (43%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I L + L + G++ ++ D E+G S+GF FV F ++ A+ AI+ +
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + + +L +K +++ N+ + +++EF ++ G +
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGK-I 245
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + RGF FV + ++A A + ++ FK G + A K
Sbjct: 246 TSAVLEKDSE--GKLRGFGFVNFEDHAAAAKAVDELNELEFK--GQKLYVGRAQKKYERL 301
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ A Q L+VKN+ D+ EK+KE F G +T VM
Sbjct: 302 QELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
R FGF+ ++ A KA+ + + + GK P++V
Sbjct: 362 RGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 394
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +F+ L +E L++ P G + ++M+D E+G S+GF FV F + E A KA
Sbjct: 320 QGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKA 378
Query: 165 IDELHSKELKGKTIRCSLSETK 186
I E + + + GK + ++++ K
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRK 400
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++L + + V++ + ++ S+E+ +L G + L KD E G+ +GF
Sbjct: 204 KKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE-GKLRGFG 262
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F A KA+DEL+ E KG+ + ++ K
Sbjct: 263 FVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKK 297
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 18/255 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KAI+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KG+ R S+ L GN+ KN D K + D V + + ++
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI 157
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D +++GF FV + A ++ ++A + N I A S + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDG 349
A+KAV+ E++G
Sbjct: 272 AVKAVEALNDSELNG 286
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 394
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ +QL + + +++ + + ++E ++L G + L KD + G+ KGF F
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGF 263
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
V++ E A KA++ L+ EL G+ + ++ KN
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN 298
>sp|Q8IYX4|DND1_HUMAN Dead end protein homolog 1 OS=Homo sapiens GN=DND1 PE=1 SV=1
Length = 353
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 14/256 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + + E +ELF++HG++T + GK R FGF++Y +
Sbjct: 222 EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEA 281
Query: 335 ALKAVKDTEKYEIDGK 350
A AV E G+
Sbjct: 282 AAVAVDHLNDIEFKGQ 297
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ ++ + N + +++ + D ++ED R+L E GD+ + +D + G+S+GF
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFG 272
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV++ E A A+D L+ E KG+ +L++G K E+E RK E
Sbjct: 273 FVNYIRHEAAAVAVDHLNDIEFKGQ-----------KLYVGRAQKKHEREEELRKQYE 319
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F + + A KA+ E++ K ++GK + +L++ K+
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKD 464
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 11/252 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++DP +++GF FV Y + A+ + ++M N K + G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM---NGKEISGKIIFVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVGSKPLYV 365
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 21/257 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL + K+ D A
Sbjct: 129 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCK-VFVGRFKNRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGK 350
+A KAV++ +I+G+
Sbjct: 242 AAKKAVEEMNGRDINGQ 258
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 35/258 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAV 339
+ FG I ++ A KA+
Sbjct: 332 KGFGLICFSSPEDATKAM 349
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR+ G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 350 TEMNGRILGSKPLSIALAQ 368
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 25/259 (9%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L + +E L D+ P+G + +R+ +D + S G+A+V++ E KKA
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
I EL+ E+ G+ R SE +FI N+ + G V +
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGE-VLS 166
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
++ D SR GF FV + + A + + + ++G ++ PK D
Sbjct: 167 CKVALDENGNSR--GFGFVHFKEESDAKDAIEAV--NGMLMNGLEVYVAMHVPKK--DRI 220
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ + KA +YVKNI T+ E+ ++LF ++GE+ + GK + FGF+++ +
Sbjct: 221 SKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVD 280
Query: 332 RSSALKAVKDTEKYEIDGK 350
++A KAV+ E++GK
Sbjct: 281 HNAAAKAVE-----ELNGK 294
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L + G+V ++ D E+G S+GF FV F+ + AK AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + G + ++ K +++ N+ T++EF ++ G +
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGE-I 257
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + +GF FV + ++ A + +++ FK + A K
Sbjct: 258 VSAALEKDAE--GKPKGFGFVNFVDHNAAAKAVEELNGKEFK--SQALYVGRAQKKYERA 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A Q L++KN+ D+ EK+KE F +G +T VM +
Sbjct: 314 EELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 374 KGFGFVCFSSPEEATKAMTEKNQQIVAGK-----PLYV 406
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L++ P G + R+M+D+E G SKGF FV F S E A KA+
Sbjct: 333 GVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAM 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 392 TEKNQQIVAGKPLYVAIAQRKD 413
>sp|Q6DCB7|DND1_XENLA Dead end protein homolog 1 OS=Xenopus laevis GN=dnd1 PE=2 SV=2
Length = 371
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +GSEVFIG +P+D E+ L L + +G ++E RLM SG ++GFA+ + S+ A
Sbjct: 73 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMT-FSGLNRGFAYARYISRRQAI 131
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L+ E+ KG I S K+ L + +P N+ E+ + V+++V GV +I L
Sbjct: 132 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHP 191
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
P S+ + V Y ++ A +++ + + L G T++W
Sbjct: 192 SPTKESQV--LAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 234
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 135/283 (47%), Gaps = 16/283 (5%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
E + ++SV D ++ + + N + +++G L +E L ++ PIG V +R+
Sbjct: 39 ESSDATSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRV 98
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV- 194
+D S +S G+A+V++ E +KAI+EL+ ++G+ R S+ + R GN+
Sbjct: 99 CRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIF 158
Query: 195 PKNWTEDEFRKVIEDVGPGVETIELIK-DPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253
KN K + D I +K + +++ F FV Y A Q + +
Sbjct: 159 IKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAA----QAAIES 214
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEK-IKELFQRHGE 308
+ N + S D + ++KA +YVKNI D TEK +ELF G+
Sbjct: 215 VNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNI-DLAYTEKEFEELFAPFGK 273
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+T + + GK + FGF+++ E +A KAV++ EI+G+
Sbjct: 274 ITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQ 316
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + V++ D + G+SK F FV + ++E A+ AI+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + L E K +++ N+ +TE EF ++ G +
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK-I 274
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + +++GF FV + + A + +++ + +++G + A K
Sbjct: 275 TSIYLEKDAE--GKSKGFGFVNFEEHEAAAKAVEELNDK--EINGQKIYVGRAQKKRERT 330
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L+VKN+ + +EK++E F+ G +T + +GK
Sbjct: 331 EELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKS 390
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + ++GK P++V
Sbjct: 391 KGFGFVCFSTPEEATKAITEMNQRMVNGK-----PLYV 423
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++L + N + +++ + +E++ +L P G + + L KD E G+SKGF
Sbjct: 233 KKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFG 291
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F E A KA++EL+ KE+ G+ I ++ K
Sbjct: 292 FVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKK 326
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L + E L + +P G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 350 GVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTPEEATKAI 408
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + GK + +L++ K
Sbjct: 409 TEMNQRMVNGKPLYVALAQRK 429
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 133/282 (47%), Gaps = 48/282 (17%)
Query: 28 EQVEEDPEEEGGDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTAS 87
E+ +E+P E +F+ + D++Y ++A A+++D E ++ D + + +S
Sbjct: 57 ERTKENPFREEPGADFDRSGSDQQYS-AEAEANQEDDLNETSQQAPDPSSYDIRGQALSS 115
Query: 88 V-------GEDEKDKHA--QLLALPPNGS-------------------EVFIGGLPKDAS 119
GE+ K+ + AL +G+ ++FIGGL + +
Sbjct: 116 ATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETT 175
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKT 177
++ LRD E G+V + +M+D +G S+GF F++F++ K ++E+ SKE L GK
Sbjct: 176 DDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN----PKCVNEVMSKEHHLDGKI 231
Query: 178 IRCSLS------ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNR 230
I + E ++F+G VP + TE+EFR G ++ T+ + KD P R
Sbjct: 232 IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRP---R 288
Query: 231 GFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GF FV Y N + + + M + G + A PK++
Sbjct: 289 GFGFVTYENESAVEAT---MSQPYITIHGKPVEVKRATPKAS 327
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 124/258 (48%), Gaps = 14/258 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 61 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGE 120
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 121 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 180
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N N L+ + + PK D +
Sbjct: 181 SCKVAQDENGNSKGYGFVHYETDEAAAQAI-KHVN-NMLLNEKKVYVGYHIPKK--DRQS 236
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI + E+ ++LF ++G+VT + GK R FGF+++
Sbjct: 237 KFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTH 296
Query: 333 SSALKAVKDTEKYEIDGK 350
A KAV++ E G+
Sbjct: 297 ECAAKAVEELNGKEFRGQ 314
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
++ L K + K +++ N+ T++EFR + G V
Sbjct: 214 NNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DV 272
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D + ++RGF FV + + CA + +++ F+ G + A K
Sbjct: 273 TSSSLARDSE--GKSRGFGFVNFTTHECAAKAVEELNGKEFR--GQDLYVGRAQKKHERE 328
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A Q LY+KN+ D+ +K++++F +G +T
Sbjct: 329 EELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPIT 376
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
D+ G+SKGF FV F + + A KA+ E++ + ++GK + +L++ K
Sbjct: 427 DRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRK 472
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 28/263 (10%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L ++ PIG V +R+ +D S +S G+A+V++ E +KA
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGN----VPKNWTEDEFRKVIEDVGP 212
I+EL+ ++G+ R S+ +FI N + D F + +
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC 169
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
V T E +++ F FV Y A+ + + N N L N + S
Sbjct: 170 KVATDEF-------GQSKCFGFVHY---ETAEAAEAAIENVNGMLL-NDREVFVGKHISK 218
Query: 273 PDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFI 327
D + ++KA +YVKNI N S E ++LF G++T + + + GK + FGF+
Sbjct: 219 KDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFV 278
Query: 328 HYAERSSALKAVKDTEKYEIDGK 350
++ + SA+KAV++ EI+G+
Sbjct: 279 NFEDHESAVKAVEELNDKEINGQ 301
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + SEE L P G + + L KD++ G+SKGF
Sbjct: 218 KKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GKSKGFG 276
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F E A KA++EL+ KE+ G+ I ++ K
Sbjct: 277 FVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKK 311
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G+SK F FV + + E A+ AI+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ N++E+ F K+ G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-I 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV + ++ A + +++ + +++G + A K
Sbjct: 260 TSIYLEKD--QDGKSKGFGFVNFEDHESAVKAVEELNDK--EINGQKIYVGRAQKKRERL 315
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ A Q L+VKN+ D +EK++E F+ G +T + ++GK
Sbjct: 316 EELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ + A KA+ + I+GK P++V
Sbjct: 376 KGFGFVCFTTPEEATKAITEMNTRMINGK-----PLYV 408
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + +P G + ++M D E+G+SKGF FV F + E A KAI
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAI 393
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++++ + GK + +L++ K
Sbjct: 394 TEMNTRMINGKPLYVALAQRK 414
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 85/141 (60%), Gaps = 10/141 (7%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DL+ + E G ++E+ ++KDK +G KG AF+++ ++E A KA +
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 168 LH-SKELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
LH K L G + I+ ++++ R LF+G + K ++ + RK+ E G +E ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFG-SIEECTVL 126
Query: 221 KDPQNPSRNRGFSFVLYYNNA 241
+ P S +G +FV Y +NA
Sbjct: 127 RGPDGAS--KGCAFVKYQSNA 145
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ ++ + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 364 PEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQA 423
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 424 AIQAMNGFQIGMKRLKVQLKRPKD 447
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K S+ D+R + EP G + E +++ + G SKG AFV ++S A+ AI
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISA 153
Query: 168 LH-SKELKGKT 177
LH S+ L G +
Sbjct: 154 LHGSRTLPGAS 164
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVVHMNGKEVSGR 259
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 112/290 (38%), Gaps = 64/290 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
VM G K FGF+ ++ A KAV E++G+ P++V
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVT-----EMNGRIVGTKPLYV 365
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D E+G+SKGF +V F E A +AID L
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I +K ++I N+ T+ EF +++ G
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGK-T 242
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++ L + P+ N+GF FV + N+ A +++ N FK G ++ A K
Sbjct: 243 DSVVLERTPE--GENKGFGFVNFVNHEDAVKCVEELNNTEFK--GQPLYVNRAQKKYERQ 298
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T A Q L++KN+ D+ +K++E F +G +T + ++GK
Sbjct: 299 QELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKS 358
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + + GK P++V
Sbjct: 359 KGFGFVCFSTPEEATKAITEKNQQIVAGK-----PLYV 391
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 19/263 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F + AK AI+
Sbjct: 35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIE 94
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
+L+ +KGK R S+ L GN+ KN D K + D I K
Sbjct: 95 KLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKV 154
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ + +++GF +V + D S + ++A + N I S + + +
Sbjct: 155 ATDETGKSKGFGYVHFEE----DESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEE 210
Query: 282 VKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
+KA +Y+KNI T+ ++ +EL + G+ VV+ G+ + FGF+++ A+
Sbjct: 211 MKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAV 270
Query: 337 KAVKDTEKYEIDGKSHLHFPVFV 359
K V++ E G+ P++V
Sbjct: 271 KCVEELNNTEFKGQ-----PLYV 288
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L ++ L + P G + ++M E+G+SKGF FV F + E A KAI
Sbjct: 318 GINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTT-ENGKSKGFGFVCFSTPEEATKAI 376
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 377 TEKNQQIVAGKPLYVAIAQRK 397
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ ++ + N + V+I + + ++++ +L G V L + E GE+KGF
Sbjct: 201 KKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPE-GENKGFG 259
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F + E A K ++EL++ E KG+ + + ++ K
Sbjct: 260 FVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKK 294
>sp|Q6DGV1|CELF4_DANRE CUGBP Elav-like family member 4 OS=Danio rerio GN=celf4 PE=2 SV=1
Length = 520
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 84/142 (59%), Gaps = 11/142 (7%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DLR L E G ++E+ ++KD+ +G KG AF+++ ++E A KA
Sbjct: 48 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTA 107
Query: 168 LH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G + I+ +++++R LF+G + K ED+ R++ E G +E +
Sbjct: 108 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFG-SIEECTI 166
Query: 220 IKDPQNPSRNRGFSFVLYYNNA 241
++ P S +G +FV Y +A
Sbjct: 167 LRGPDGNS--KGCAFVKYSTHA 186
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ + +L + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 432 PEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQA 491
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 492 AIQSMNGFQIGMKRLKVQLKRPKD 515
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K E+D+R L E G + E +++ + G SKG AFV + + A+ AI
Sbjct: 136 KLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSTHAEAQAAISA 194
Query: 168 LHSKE 172
LH +
Sbjct: 195 LHGSQ 199
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 14/254 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 165
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 166 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 221
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + + E+ +ELF++ GE+T + + GK R FGF++++
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 334 SALKAVKDTEKYEI 347
SA AV + + EI
Sbjct: 282 SAQAAVDEMNEKEI 295
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V+I + +D +EE+ R+L E G++ L +D+E G+S+GF
Sbjct: 215 KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F + E A+ A+DE++ KE++ +L++G K E+E RK E
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIR-----------TQKLYVGRAQKKHEREEELRKQYE 320
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
K G+SKGF FV F S + A KA+ E++ + + GK + +L++ K
Sbjct: 427 KGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 471
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 14/257 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 165 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 220
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KN+ S E+ +++F++ GE+T + + GK R FGF++Y+
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 334 SALKAVKDTEKYEIDGK 350
SA AV + E+ G+
Sbjct: 281 SAQAAVDEMNDKEVKGQ 297
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ + +E+EFR++ E G +
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGE-I 255
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D + ++RGF FV Y + A + +M + K G + A K
Sbjct: 256 TSATLSRDQE--GKSRGFGFVNYSTHDSAQAAVDEMNDKEVK--GQKLYVGRAQKKHERE 311
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A+ Q LYVKN+ D+ EK++E+F +G +T
Sbjct: 312 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTIT 359
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 420 GKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKD 462
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 122/257 (47%), Gaps = 20/257 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 167
Query: 220 IKDPQNPSRN-RGFSFVLY-----YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273
K Q+ N +G+ FV Y NNA + +LN G+ IS D +S
Sbjct: 168 CKVAQDEFGNSKGYGFVHYETAEAANNAI-KHVNGMLLNDKKVFVGH--HISKKDRQSKF 224
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM---PPGKSGKRDFGFIHYA 330
D A +Y+KNI + + E+ +++F++ GE+T + P GKS R FGF++Y+
Sbjct: 225 DEMKA--NFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKS--RGFGFVNYS 280
Query: 331 ERSSALKAVKDTEKYEI 347
SA AV + E+
Sbjct: 281 THESAQAAVDEMHDKEV 297
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + D +EE+ R + E G++ L +D E G+S+GF
Sbjct: 217 KKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFG 275
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV++ + E A+ A+DE+H KE+K +L++G K E+E RK E
Sbjct: 276 FVNYSTHESAQAAVDEMHDKEVK-----------TQKLYVGRAQKKHEREEELRKQYE 322
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 425 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 467
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 20/257 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L ++ PIG V +R+ +D S +S G+A+V++ E +KAI+
Sbjct: 52 ASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIE 111
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
EL+ ++G+ R S+ +FI N+ G + + +
Sbjct: 112 ELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGK-ILSCK 170
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ D S+ GF ++Y A A + + +N N + S D +
Sbjct: 171 VATDDMGQSKCFGF---VHYETAEAAEAAIENVNGMLL---NDREVFVGKHISKKDRESK 224
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI S E +K+LF +G +T + + GK + FGF++Y
Sbjct: 225 FEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHE 284
Query: 334 SALKAVKDTEKYEIDGK 350
+A+KAV++ EI+G+
Sbjct: 285 AAVKAVEELNDKEINGQ 301
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + SEEDL+ L P G + + L KD E G+SKGF
Sbjct: 218 KKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFG 276
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV++ E A KA++EL+ KE+ G+ I ++ K
Sbjct: 277 FVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKK 311
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L E L + +P G + R+M D E+G+SKGF FV F S E A KAI
Sbjct: 335 GVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSPEEATKAI 393
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + GK + +L++ K+
Sbjct: 394 TEMNQRMFFGKPLYVALAQRKD 415
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 126/278 (45%), Gaps = 38/278 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D + G+SK F FV + + E A+ AI+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSTFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAAIENV 200
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ ++E++ +K+ G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYG-AI 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + +++GF FV Y + A + +++ + +++G + A K
Sbjct: 260 TSIYLEKDAE--GKSKGFGFVNYEGHEAAVKAVEELNDK--EINGQKIYVGRAQKKRERM 315
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T + Q L++KN+ D +EK++E F+ G +T + ++GK
Sbjct: 316 EELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KA+ + + GK P++V
Sbjct: 376 KGFGFVCFSSPEEATKAITEMNQRMFFGK-----PLYV 408
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 117/250 (46%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ +RG+ FV + A+ + Q M N D + + ++ A +
Sbjct: 131 VCDEYGSRGYGFVHFETQEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ +++KE+F G V + SG+ R FGF++Y A KAV
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 341 DTEKYEIDGK 350
+ E++G+
Sbjct: 250 EMNGKEVNGR 259
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 122/279 (43%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D GD+ +++ D E G S+G+ FV F ++E A +AI +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ + +++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFG-NT 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--S 271
+++++ D N R+RGF FV Y N+ A + +M N K ++G + A +
Sbjct: 218 LSVKVMMD--NSGRSRGFGFVNYGNHEEAQKAVTEM---NGKEVNGRMVYVGRAQKRIER 272
Query: 272 TPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D +++++ F +G +T VM G
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
K FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 K-GFGFVCFSSPEEATKAVT-----EMNGRIVSTKPLYV 365
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ V+I +D ++ L+++ G+ V++M D SG S+GF FV++ + E A+KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 167 ELHSKELKGKTIRCSLSETK-------------------NR-----LFIGNVPKNWTEDE 202
E++ KE+ G+ + ++ + NR L++ N+ +D
Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
RK G TI K ++GF FV +
Sbjct: 310 LRKEFSPYG----TITSTKVMTEGGHSKGFGFVCF 340
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVSTKPLYVALAQRK 371
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 122/255 (47%), Gaps = 20/255 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P S +++G L + SE+ L ++ +G V +R+ +D + S +A+V++ + A++
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 164 AIDELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+D L++ ++GK R S+ L FI N+ K G +
Sbjct: 67 ALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG-NIL 125
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ +++ D N S +GF FV Y AD + K+ ++G + P +
Sbjct: 126 SCKVVTDDGNSS--KGFGFVHYETQESADKAIAKV--NGMMINGQK---VFVGPFKSSKE 178
Query: 276 SAAASQVK--ALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAER 332
++VK ++ KN+ ++ +++KEL Q++GE+T + +M K + FGF ++ E
Sbjct: 179 RGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANF-ES 237
Query: 333 SSALKAVKDTEKYEI 347
+ A K V + E +I
Sbjct: 238 AEAAKNVVENENGKI 252
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 31/270 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D + SKGF FV + ++E A KAI ++
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKV 158
Query: 169 HSKELKGKTI----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+ + G+ + R +E K +F N+ ++ D+ +++++ G + I
Sbjct: 159 NGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGE-ITNI 217
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
++ D + S+ GF+ N A+ ++ + N N K+ P + K +
Sbjct: 218 TIMADDKGKSKGFGFA-----NFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272
Query: 278 ------AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGK-SGKRDFGFIHY 329
Q LY+KNI D+ +K++E+F + G +T +VM K + + FGF+ Y
Sbjct: 273 LKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 330 AERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
A +AV E++G+ P++V
Sbjct: 333 TAPDEATRAVT-----EMNGRMIGTKPLYV 357
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++G++ +E ++ VG V I + +D N R+ +++V YYN A A+ +
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGL-VSNIRVCRD-TNTRRSLSYAYVNYYNGADAERALD 69
Query: 249 KMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ N + G I W S D S S V +++KN+ + + + F G
Sbjct: 70 TLNNTPIR--GKACRIMW----SQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGN 123
Query: 309 V--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+ KVV G S K FGF+HY + SA KA+ I+G+
Sbjct: 124 ILSCKVVTDDGNSSK-GFGFVHYETQESADKAIAKVNGMMINGQ 166
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I + + LR++ G + +MKD ++ SKGF FV + + + A +A+
Sbjct: 283 GVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAV 342
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 343 TEMNGRMIGTKPLYVALAQRK 363
>sp|Q7T1H5|DND1_DANRE Dead end protein 1 OS=Danio rerio GN=dnd PE=1 SV=1
Length = 411
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G EVFI +P D E+ L L + IG ++E RLM + SG+++GFA+ + A A
Sbjct: 58 SGCEVFISQIPNDVYEDRLIPLFQSIGTIYEFRLMMN-FSGQTRGFAYAKYGDPLTASAA 116
Query: 165 IDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ LH L +G + S K +L +G++P + E + V++ + GVE + L P
Sbjct: 117 VTTLHQYRLPEGGCLTVRRSTEKRQLRLGDLPVSMNESKLLMVLQMLSDGVEDVLL--KP 174
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD 268
P + V Y ++ A +++ ++ A G + T+ W
Sbjct: 175 PGPKGKEVVALVNYTSHYAASMAKKVLVEAFRNRYGISITVRWTS 219
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 115/250 (46%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN E K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ +RG+ FV + A+ + Q M N D + + ++ A +
Sbjct: 131 VCDEHGSRGYGFVHFETQEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+KN ++ ++++E+F G V VM R FGF++Y A KAV
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 341 DTEKYEIDGK 350
+ E++G+
Sbjct: 250 EMNGKEVNGR 259
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ V+I +D ++ LR++ G+ V++M D ++G S+GF FV++ + E A+KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 167 ELHSKELKGKTIRCSLSETK-------------------NR-----LFIGNVPKNWTEDE 202
E++ KE+ G+ I ++ + NR L++ N+ +D
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
RK G TI K ++GF FV +
Sbjct: 310 LRKEFSPYG----TITSAKVMTEGGHSKGFGFVCF 340
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 119/279 (42%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L D G++ +++ D+ S+G+ FV F ++E A +AI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ + R++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--S 271
++ D R+RGF FV Y N+ A + +M N K ++G + A +
Sbjct: 219 SVKVMMDDT---GRSRGFGFVNYGNHEEAQKAVSEM---NGKEVNGRMIYVGRAQKRIER 272
Query: 272 TPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D +++++ F +G +T VM G
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
K FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 K-GFGFVCFSSPEEATKAVT-----EMNGRIVSTKPLYV 365
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVSTKPLYVALAQRK 371
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 121/253 (47%), Gaps = 7/253 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ + E++KE+F ++G V + +GK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGKSHL 353
+ +++GKS
Sbjct: 250 EMNGKDMNGKSMF 262
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 128/279 (45%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AID++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ D + +++GF FV + + A + +M + ++G + + A K
Sbjct: 219 -SVKVMTD--DNGKSKGFGFVSFERHEDAQKAVDEMNGKD--MNGKSMFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
Q LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 -KGFGFVCFSSPEEATKAVT-----EMNGRIVATKPLYV 365
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D ++E L+++ G V++M D ++G+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ K++ GK++ ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>sp|Q4R535|CELF4_MACFA CUGBP Elav-like family member 4 OS=Macaca fascicularis GN=CELF4
PE=2 SV=1
Length = 474
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 85/141 (60%), Gaps = 10/141 (7%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DL+ L E G ++E+ ++KD+ +G KG AF+++ +E A KA
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 168 LH-SKELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
LH K L G + I+ +++++R LF+G + K +ED+ R++ E G +E ++
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG-NIEECTIL 173
Query: 221 KDPQNPSRNRGFSFVLYYNNA 241
+ P ++G +FV Y ++A
Sbjct: 174 RGPDG--NSKGCAFVKYSSHA 192
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K SE+D+R L E G++ E +++ + G SKG AFV + S A+ AI+
Sbjct: 142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 200
Query: 168 LHSKE 172
LH +
Sbjct: 201 LHGSQ 205
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 265 SWADPKSTP--DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
S +P + P DH A +K L++ IP N + +K LF+ G++ ++ V+ +G
Sbjct: 39 SPGNPSTIPMKDHDA----IK-LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGM 93
Query: 322 -RDFGFIHYAERSSALKA 338
+ F+ Y ER SALKA
Sbjct: 94 HKGCAFLTYCERESALKA 111
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 14/254 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ ++
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+DEL+ +KGK R S+ + GNV KN K + D I
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 220 IKDPQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ ++G+ FV +Y A A + K +N N + S D +
Sbjct: 159 CKVAQDEFGVSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 214
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI E+ ++LF++ GE+T + GK R FGF++++
Sbjct: 215 FEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHE 274
Query: 334 SALKAVKDTEKYEI 347
SA AV++ E+
Sbjct: 275 SAQAAVEEMNDKEV 288
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + + +E+ R L E G++ L +D E G+S+GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F + E A+ A++E++ KE++ + +L++G K E+E RK E
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYE 313
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 456
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 128/280 (45%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
+++++ D +++GF FV + + A + +M N K L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM---NGKELNGKQIYVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
Q LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 273 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVATKPLYV 365
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 17/176 (9%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+ A+EE++R E G+V EV L+KDK +G+ +G FV + + + A +AI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 168 LHSK-ELKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
LH++ L G T +R + + + +LF+G++ K TE E ++ G VE
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVED 239
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTPTI-SWADPK 270
+ L++D ++RG FV Y + A + LN + + G N P I +A+PK
Sbjct: 240 VYLMRDEYR--QSRGCGFVKYSSKETA-MAAIDGLNGTYTMRGCNQPLIVRFAEPK 292
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG--FIHYAE 331
D S +S VK L+V ++P + E+I+ F++HG V +V + K + G F+ YA
Sbjct: 112 DVSDRSSTVK-LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT 170
Query: 332 RSSALKAVK 340
A +A++
Sbjct: 171 SKDADRAIR 179
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 120/250 (48%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L DA+E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 127/280 (45%), Gaps = 44/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
+++++ D +++GF FV + + A + +M N K L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM---NGKELNGKQIYVGRAQKKVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
Q LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 273 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
+ FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 --KGFGFVCFSSPEEATKAVT-----EMNGRIVATKPLYV 365
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>sp|Q6VY05|DND1_MOUSE Dead end protein homolog 1 OS=Mus musculus GN=Dnd1 PE=1 SV=1
Length = 352
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP+GSEV+IG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPSGSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELK--GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ +L+ + + C +E K L + +P + ++ GP ++ L+
Sbjct: 113 AAIATLHNHQLRPSCQLLVCRSTE-KCELTVDGLPLSLNRRALLLALQPFGPCLQETLLL 171
Query: 221 KDPQN-PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P + PS+ + + + + A +++ ++ +L G + W P
Sbjct: 172 PSPGSAPSQ---IALLKFSTHRAAAMAKKALVEGQSRLCGEQVAVEWLKP 218
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 117/250 (46%), Gaps = 7/250 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L D +E L + P G + +R+ +D + S +A+++F+ A++A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN E K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ +RG+ FV + + A+ + Q M N D + + ++ A +
Sbjct: 131 VCDEHGSRGYGFVHFETHEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ ++++E+F G V + SG+ R FGF++Y A KAV
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 341 DTEKYEIDGK 350
+ E++G+
Sbjct: 250 EMNGKEVNGR 259
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ V+I +D ++ LR++ G+ V++M D +SG S+GF FV++ + E A+KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 167 ELHSKELKGKTIRCSLSETK 186
E++ KE+ G+ I ++ +
Sbjct: 250 EMNGKEVNGRMIYVGRAQKR 269
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 118/279 (42%), Gaps = 42/279 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L D G++ +++ D+ S+G+ FV F + E A +AI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ + R++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--S 271
++ D R+RGF FV Y N+ A + +M N K ++G + A +
Sbjct: 219 SVKVMMDDS---GRSRGFGFVNYGNHEEAQKAVSEM---NGKEVNGRMIYVGRAQKRIER 272
Query: 272 TPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D +++++ F +G +T VM G
Sbjct: 273 QSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359
K FGF+ ++ A KAV E++G+ P++V
Sbjct: 333 K-GFGFVCFSSPEEATKAVT-----EMNGRIVSTKPLYV 365
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVSTKPLYVALAQRK 371
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,874,793
Number of Sequences: 539616
Number of extensions: 7162568
Number of successful extensions: 75734
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1674
Number of HSP's successfully gapped in prelim test: 1321
Number of HSP's that attempted gapping in prelim test: 36644
Number of HSP's gapped (non-prelim): 20583
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)