Query 018143
Match_columns 360
No_of_seqs 277 out of 2382
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:30:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.6E-46 5.6E-51 344.6 30.8 252 105-358 2-347 (352)
2 KOG0117 Heterogeneous nuclear 100.0 5.8E-45 1.3E-49 317.9 25.5 246 103-355 80-326 (506)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 6.5E-43 1.4E-47 329.1 27.9 247 103-357 55-304 (578)
4 KOG0145 RNA-binding protein EL 100.0 7.8E-42 1.7E-46 278.6 21.8 249 105-355 40-353 (360)
5 TIGR01628 PABP-1234 polyadenyl 100.0 8.5E-41 1.8E-45 325.2 28.8 243 108-356 2-257 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 5E-39 1.1E-43 312.8 28.1 249 105-357 87-361 (562)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.2E-38 1.1E-42 298.4 29.7 237 105-356 1-347 (481)
8 TIGR01622 SF-CC1 splicing fact 100.0 5.3E-38 1.2E-42 299.0 29.6 248 104-358 87-446 (457)
9 KOG0127 Nucleolar protein fibr 100.0 2.8E-38 6.1E-43 282.2 23.0 248 106-358 5-376 (678)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.2E-37 1.3E-41 295.6 27.5 243 104-357 173-499 (509)
11 TIGR01645 half-pint poly-U bin 100.0 5.9E-36 1.3E-40 282.4 29.3 161 104-268 105-282 (612)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.5E-35 7.5E-40 279.1 28.7 233 106-351 96-465 (481)
13 KOG0148 Apoptosis-promoting RN 100.0 2.2E-35 4.9E-40 242.3 17.5 221 104-356 4-234 (321)
14 KOG0144 RNA-binding protein CU 100.0 1.6E-34 3.5E-39 251.6 17.4 248 105-355 33-499 (510)
15 KOG0123 Polyadenylate-binding 100.0 2.7E-31 5.8E-36 240.2 22.1 237 107-356 2-242 (369)
16 TIGR01659 sex-lethal sex-letha 100.0 2.4E-30 5.3E-35 232.9 20.4 168 103-272 104-277 (346)
17 KOG0123 Polyadenylate-binding 100.0 2.2E-30 4.7E-35 234.2 19.9 245 105-357 75-346 (369)
18 KOG0124 Polypyrimidine tract-b 100.0 4.6E-30 9.9E-35 219.3 18.9 245 106-354 113-529 (544)
19 KOG0127 Nucleolar protein fibr 100.0 3.2E-30 6.9E-35 230.8 15.5 234 106-342 117-516 (678)
20 KOG0110 RNA-binding protein (R 100.0 6.3E-29 1.4E-33 229.5 17.6 246 104-358 383-691 (725)
21 TIGR01659 sex-lethal sex-letha 100.0 6E-28 1.3E-32 217.4 19.2 162 185-356 106-271 (346)
22 TIGR01645 half-pint poly-U bin 100.0 1.2E-27 2.5E-32 226.4 19.0 168 186-357 107-281 (612)
23 KOG0147 Transcriptional coacti 100.0 2.1E-28 4.5E-33 220.3 11.7 248 104-359 177-527 (549)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.5E-26 9.8E-31 210.0 20.6 163 105-271 88-350 (352)
25 KOG0148 Apoptosis-promoting RN 99.9 2.7E-26 5.9E-31 189.0 14.6 159 106-274 62-242 (321)
26 KOG4212 RNA-binding protein hn 99.9 8.7E-25 1.9E-29 191.1 23.1 144 105-252 43-278 (608)
27 TIGR01622 SF-CC1 splicing fact 99.9 5.7E-25 1.2E-29 209.5 19.4 169 184-357 87-263 (457)
28 TIGR01648 hnRNP-R-Q heterogene 99.9 3.2E-24 7E-29 202.9 17.5 196 104-311 136-370 (578)
29 KOG0131 Splicing factor 3b, su 99.9 1.8E-24 4E-29 168.2 11.2 167 105-274 8-181 (203)
30 KOG0144 RNA-binding protein CU 99.9 8.3E-24 1.8E-28 184.9 13.8 162 187-356 35-202 (510)
31 KOG0145 RNA-binding protein EL 99.9 1.5E-23 3.3E-28 171.8 11.8 162 184-355 39-204 (360)
32 KOG0110 RNA-binding protein (R 99.9 2.6E-23 5.6E-28 192.6 14.4 219 105-356 226-594 (725)
33 TIGR01642 U2AF_lg U2 snRNP aux 99.9 9E-23 1.9E-27 197.1 18.7 163 104-269 293-501 (509)
34 KOG0131 Splicing factor 3b, su 99.9 3.2E-22 7E-27 155.8 11.8 164 185-357 8-174 (203)
35 KOG0146 RNA-binding protein ET 99.9 6.9E-22 1.5E-26 162.7 13.9 249 103-354 16-359 (371)
36 KOG0109 RNA-binding protein LA 99.9 9.3E-22 2E-26 163.9 10.6 148 107-274 3-154 (346)
37 KOG0117 Heterogeneous nuclear 99.9 6.3E-21 1.4E-25 167.8 16.2 157 186-357 83-245 (506)
38 KOG0109 RNA-binding protein LA 99.9 9.8E-22 2.1E-26 163.8 9.5 143 187-355 3-145 (346)
39 KOG4206 Spliceosomal protein s 99.9 3.4E-20 7.3E-25 150.5 17.3 205 105-355 8-217 (221)
40 KOG1190 Polypyrimidine tract-b 99.8 1.2E-19 2.5E-24 158.1 15.7 238 104-356 26-369 (492)
41 KOG0124 Polypyrimidine tract-b 99.8 3.2E-20 6.9E-25 159.3 11.3 167 187-357 114-287 (544)
42 KOG4205 RNA-binding protein mu 99.8 4.4E-20 9.4E-25 161.5 9.8 233 105-344 5-256 (311)
43 KOG4211 Splicing factor hnRNP- 99.8 1E-18 2.2E-23 156.1 16.7 241 102-354 6-352 (510)
44 KOG0120 Splicing factor U2AF, 99.8 6.7E-19 1.5E-23 161.3 15.4 242 105-357 174-489 (500)
45 KOG4205 RNA-binding protein mu 99.8 3.3E-19 7.2E-24 156.0 10.0 167 185-357 5-173 (311)
46 KOG1548 Transcription elongati 99.8 6E-17 1.3E-21 138.6 18.8 197 103-354 131-346 (382)
47 KOG0147 Transcriptional coacti 99.8 2.1E-18 4.7E-23 156.1 10.0 166 187-357 180-355 (549)
48 PLN03134 glycine-rich RNA-bind 99.8 8.2E-18 1.8E-22 133.0 11.1 83 104-186 32-114 (144)
49 KOG0105 Alternative splicing f 99.7 1.1E-16 2.3E-21 125.2 13.6 146 104-261 4-181 (241)
50 KOG1365 RNA-binding protein Fu 99.7 7.5E-17 1.6E-21 139.5 13.7 251 103-359 57-361 (508)
51 KOG1190 Polypyrimidine tract-b 99.7 1.5E-15 3.3E-20 132.6 19.5 234 106-355 150-486 (492)
52 KOG1457 RNA binding protein (c 99.7 4.5E-16 9.8E-21 125.4 15.0 233 103-348 31-274 (284)
53 KOG1456 Heterogeneous nuclear 99.7 2.9E-15 6.2E-20 129.4 19.1 239 102-356 27-359 (494)
54 PLN03134 glycine-rich RNA-bind 99.7 3.2E-16 7E-21 123.9 11.3 78 280-357 32-111 (144)
55 KOG1456 Heterogeneous nuclear 99.7 2.1E-14 4.5E-19 124.2 21.9 231 106-350 120-475 (494)
56 PF00076 RRM_1: RNA recognitio 99.7 3.6E-16 7.8E-21 108.7 8.5 70 109-179 1-70 (70)
57 PF00076 RRM_1: RNA recognitio 99.7 4.7E-16 1E-20 108.1 8.1 69 285-353 1-70 (70)
58 KOG0122 Translation initiation 99.6 1E-15 2.2E-20 125.2 9.4 82 105-186 188-269 (270)
59 PF14259 RRM_6: RNA recognitio 99.6 2.8E-15 6.1E-20 104.1 9.2 70 109-179 1-70 (70)
60 KOG0125 Ataxin 2-binding prote 99.6 1.4E-15 2.9E-20 129.5 8.8 80 277-356 91-170 (376)
61 KOG4211 Splicing factor hnRNP- 99.6 1.4E-14 3.1E-19 129.8 14.0 163 187-358 11-180 (510)
62 KOG0149 Predicted RNA-binding 99.6 1.8E-15 4E-20 123.3 6.8 78 106-184 12-89 (247)
63 KOG0106 Alternative splicing f 99.6 2.8E-15 6.2E-20 123.3 7.7 164 107-354 2-165 (216)
64 PF14259 RRM_6: RNA recognitio 99.6 5.4E-15 1.2E-19 102.7 8.0 69 285-353 1-70 (70)
65 PLN03120 nucleic acid binding 99.6 1.1E-14 2.3E-19 123.2 10.0 74 282-357 4-77 (260)
66 KOG0105 Alternative splicing f 99.6 8.5E-14 1.8E-18 109.1 13.1 152 185-348 5-176 (241)
67 KOG0126 Predicted RNA-binding 99.6 5.7E-16 1.2E-20 120.9 1.0 80 104-183 33-112 (219)
68 COG0724 RNA-binding proteins ( 99.6 7.5E-14 1.6E-18 124.4 14.5 175 106-347 115-292 (306)
69 PLN03120 nucleic acid binding 99.6 2.1E-14 4.6E-19 121.3 10.1 76 106-185 4-79 (260)
70 KOG0113 U1 small nuclear ribon 99.5 1.5E-14 3.2E-19 121.8 8.4 81 104-184 99-179 (335)
71 KOG0121 Nuclear cap-binding pr 99.5 1.3E-14 2.8E-19 106.8 6.9 80 104-183 34-113 (153)
72 PLN03213 repressor of silencin 99.5 2.4E-14 5.3E-19 128.0 8.7 78 105-186 9-88 (759)
73 KOG0114 Predicted RNA-binding 99.5 7.8E-14 1.7E-18 98.7 9.0 74 281-355 17-90 (124)
74 KOG0114 Predicted RNA-binding 99.5 8.1E-14 1.8E-18 98.7 8.8 81 103-186 15-95 (124)
75 KOG0121 Nuclear cap-binding pr 99.5 4.7E-14 1E-18 103.8 6.9 77 280-356 34-112 (153)
76 KOG4212 RNA-binding protein hn 99.5 6E-13 1.3E-17 117.5 14.9 166 186-355 44-289 (608)
77 KOG0122 Translation initiation 99.5 1.2E-13 2.6E-18 113.2 9.6 76 281-356 188-265 (270)
78 PLN03121 nucleic acid binding 99.5 1.4E-13 3E-18 114.5 9.9 75 281-357 4-78 (243)
79 PLN03121 nucleic acid binding 99.5 1.5E-13 3.3E-18 114.3 10.0 77 104-184 3-79 (243)
80 smart00362 RRM_2 RNA recogniti 99.5 2E-13 4.2E-18 94.9 9.0 72 108-181 1-72 (72)
81 smart00362 RRM_2 RNA recogniti 99.5 2.6E-13 5.7E-18 94.2 9.6 72 284-355 1-72 (72)
82 KOG4207 Predicted splicing fac 99.5 5.7E-14 1.2E-18 112.1 6.1 81 104-184 11-91 (256)
83 KOG0130 RNA-binding protein RB 99.5 8.7E-14 1.9E-18 103.3 6.1 80 105-184 71-150 (170)
84 KOG0107 Alternative splicing f 99.5 1.5E-13 3.3E-18 107.0 7.4 76 105-185 9-84 (195)
85 KOG0125 Ataxin 2-binding prote 99.5 1.5E-13 3.2E-18 117.2 7.8 80 104-185 94-173 (376)
86 PLN03213 repressor of silencin 99.5 2E-13 4.4E-18 122.2 9.0 74 281-356 9-84 (759)
87 KOG0107 Alternative splicing f 99.5 1.8E-13 3.9E-18 106.6 7.2 72 282-356 10-81 (195)
88 KOG0130 RNA-binding protein RB 99.5 1.7E-13 3.8E-18 101.7 6.7 80 280-359 70-151 (170)
89 smart00360 RRM RNA recognition 99.4 4.1E-13 9E-18 92.9 8.2 71 111-181 1-71 (71)
90 KOG4207 Predicted splicing fac 99.4 2.3E-13 4.9E-18 108.7 7.0 74 282-355 13-88 (256)
91 cd00590 RRM RRM (RNA recogniti 99.4 2.2E-12 4.9E-17 90.0 9.5 74 108-182 1-74 (74)
92 KOG0111 Cyclophilin-type pepti 99.4 3.8E-13 8.2E-18 108.4 6.1 83 105-187 9-91 (298)
93 KOG0113 U1 small nuclear ribon 99.4 1.3E-12 2.7E-17 110.2 9.2 75 280-354 99-175 (335)
94 cd00590 RRM RRM (RNA recogniti 99.4 2.9E-12 6.3E-17 89.4 9.8 73 284-356 1-74 (74)
95 smart00360 RRM RNA recognition 99.4 1.6E-12 3.4E-17 89.9 8.2 69 287-355 1-71 (71)
96 KOG0129 Predicted RNA-binding 99.4 2.7E-11 5.8E-16 109.9 17.0 184 103-358 256-452 (520)
97 KOG0108 mRNA cleavage and poly 99.4 1.3E-12 2.8E-17 119.8 8.4 79 107-185 19-97 (435)
98 KOG0126 Predicted RNA-binding 99.4 1.1E-13 2.4E-18 108.2 1.1 77 281-357 34-112 (219)
99 PF13893 RRM_5: RNA recognitio 99.4 4.5E-12 9.7E-17 83.6 8.1 55 299-356 1-55 (56)
100 KOG0149 Predicted RNA-binding 99.3 2.1E-12 4.5E-17 105.7 6.7 76 281-357 11-88 (247)
101 KOG0128 RNA-binding protein SA 99.3 1.6E-13 3.5E-18 130.5 -0.6 218 104-349 569-804 (881)
102 KOG0120 Splicing factor U2AF, 99.3 1.1E-11 2.4E-16 114.3 10.7 166 101-269 284-491 (500)
103 smart00361 RRM_1 RNA recogniti 99.3 9.4E-12 2E-16 86.0 7.3 59 296-354 2-69 (70)
104 PF13893 RRM_5: RNA recognitio 99.3 1.7E-11 3.7E-16 80.8 7.8 56 123-183 1-56 (56)
105 smart00361 RRM_1 RNA recogniti 99.3 1.6E-11 3.4E-16 84.8 7.6 61 120-180 2-69 (70)
106 KOG4208 Nucleolar RNA-binding 99.3 2.3E-11 5E-16 97.7 8.4 84 103-186 46-130 (214)
107 COG0724 RNA-binding proteins ( 99.3 2.7E-11 5.7E-16 107.9 9.7 76 282-357 115-192 (306)
108 KOG4660 Protein Mei2, essentia 99.2 2.9E-11 6.3E-16 110.5 9.3 71 104-179 73-143 (549)
109 KOG0146 RNA-binding protein ET 99.2 1.1E-11 2.3E-16 103.0 5.2 86 102-187 281-366 (371)
110 KOG0111 Cyclophilin-type pepti 99.2 1.7E-11 3.8E-16 98.9 3.8 76 280-355 8-85 (298)
111 KOG0108 mRNA cleavage and poly 99.2 6.6E-11 1.4E-15 108.7 8.1 74 283-356 19-94 (435)
112 KOG0415 Predicted peptidyl pro 99.2 4.8E-11 1.1E-15 102.9 6.1 86 102-187 235-320 (479)
113 KOG4307 RNA binding protein RB 99.2 4.4E-10 9.5E-15 105.0 12.4 162 190-357 315-511 (944)
114 KOG4307 RNA binding protein RB 99.1 6.4E-10 1.4E-14 103.9 13.3 73 283-355 868-942 (944)
115 KOG1365 RNA-binding protein Fu 99.1 1.2E-09 2.6E-14 95.4 11.8 144 106-253 161-347 (508)
116 KOG4454 RNA binding protein (R 99.0 1.1E-10 2.3E-15 94.4 1.9 138 101-250 4-145 (267)
117 KOG0128 RNA-binding protein SA 99.0 3.6E-11 7.7E-16 114.9 -2.0 133 105-251 666-798 (881)
118 KOG4208 Nucleolar RNA-binding 99.0 1.6E-09 3.5E-14 87.2 7.3 78 280-357 47-127 (214)
119 KOG4206 Spliceosomal protein s 99.0 2.4E-09 5.2E-14 87.7 7.6 73 283-356 10-86 (221)
120 KOG0132 RNA polymerase II C-te 99.0 1.7E-09 3.8E-14 102.4 7.7 72 282-357 421-492 (894)
121 KOG4210 Nuclear localization s 98.9 1.5E-09 3.2E-14 95.4 6.2 164 186-354 88-258 (285)
122 KOG0153 Predicted RNA-binding 98.9 2.9E-09 6.2E-14 92.1 7.7 78 102-185 224-302 (377)
123 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.1E-09 4.7E-14 98.3 7.2 81 105-185 404-484 (940)
124 KOG0132 RNA polymerase II C-te 98.9 2.8E-09 6E-14 101.0 7.5 75 105-185 420-494 (894)
125 KOG0415 Predicted peptidyl pro 98.9 4.3E-09 9.3E-14 91.1 6.6 77 279-355 236-314 (479)
126 KOG0153 Predicted RNA-binding 98.9 6.6E-09 1.4E-13 89.9 7.7 73 280-356 226-299 (377)
127 KOG0112 Large RNA-binding prot 98.9 2.7E-09 5.9E-14 102.7 5.3 160 103-271 369-532 (975)
128 KOG4210 Nuclear localization s 98.8 4.2E-09 9.2E-14 92.5 5.8 162 105-271 87-265 (285)
129 KOG4676 Splicing factor, argin 98.8 1.6E-09 3.5E-14 94.9 2.6 203 106-348 7-214 (479)
130 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.2E-08 2.6E-13 93.6 7.6 78 280-357 403-482 (940)
131 KOG0112 Large RNA-binding prot 98.8 5.9E-09 1.3E-13 100.5 5.5 151 186-353 372-522 (975)
132 KOG3152 TBP-binding protein, a 98.8 3.7E-09 8E-14 87.7 3.2 75 105-179 73-159 (278)
133 KOG0533 RRM motif-containing p 98.8 2.6E-08 5.6E-13 84.4 8.2 80 105-185 82-161 (243)
134 PF04059 RRM_2: RNA recognitio 98.7 9.1E-08 2E-12 69.3 9.2 79 106-184 1-85 (97)
135 PF04059 RRM_2: RNA recognitio 98.7 4.8E-08 1E-12 70.8 7.6 66 283-348 2-71 (97)
136 KOG0116 RasGAP SH3 binding pro 98.7 1.8E-08 4E-13 92.2 6.8 80 105-185 287-366 (419)
137 KOG1457 RNA binding protein (c 98.7 6.3E-08 1.4E-12 78.8 8.9 76 280-355 32-113 (284)
138 KOG0533 RRM motif-containing p 98.7 5.4E-08 1.2E-12 82.5 8.4 76 281-356 82-158 (243)
139 KOG4660 Protein Mei2, essentia 98.7 1.4E-08 3E-13 93.3 5.1 72 279-353 72-143 (549)
140 KOG4209 Splicing factor RNPS1, 98.6 5.4E-08 1.2E-12 82.7 6.4 81 104-185 99-179 (231)
141 KOG0226 RNA-binding proteins [ 98.6 3.3E-08 7.1E-13 82.1 4.1 84 101-184 185-268 (290)
142 KOG1548 Transcription elongati 98.6 1.3E-07 2.8E-12 82.0 7.7 77 281-357 133-218 (382)
143 KOG0116 RasGAP SH3 binding pro 98.6 8.4E-08 1.8E-12 87.9 6.1 72 283-355 289-362 (419)
144 KOG0226 RNA-binding proteins [ 98.6 7.7E-08 1.7E-12 79.9 5.1 134 214-355 126-265 (290)
145 PF11608 Limkain-b1: Limkain b 98.6 4.9E-07 1.1E-11 62.2 7.9 67 283-357 3-74 (90)
146 KOG4454 RNA binding protein (R 98.5 5.5E-08 1.2E-12 79.0 3.0 78 280-357 7-84 (267)
147 PF11608 Limkain-b1: Limkain b 98.5 8.1E-07 1.7E-11 61.1 7.5 70 107-186 3-77 (90)
148 PF08777 RRM_3: RNA binding mo 98.4 6.2E-07 1.4E-11 66.6 6.0 71 283-357 2-77 (105)
149 KOG4209 Splicing factor RNPS1, 98.4 3.6E-07 7.7E-12 77.8 5.1 77 281-358 100-178 (231)
150 KOG0151 Predicted splicing reg 98.3 9E-07 1.9E-11 83.6 6.2 78 280-357 172-254 (877)
151 KOG0151 Predicted splicing reg 98.3 1.7E-06 3.7E-11 81.8 6.8 82 103-184 171-255 (877)
152 KOG0106 Alternative splicing f 98.3 7.9E-07 1.7E-11 73.8 4.0 67 284-356 3-69 (216)
153 COG5175 MOT2 Transcriptional r 98.2 3.7E-06 7.9E-11 72.8 6.4 90 105-194 113-212 (480)
154 KOG2193 IGF-II mRNA-binding pr 98.2 2.3E-07 4.9E-12 82.4 -1.0 151 187-355 2-152 (584)
155 PF08777 RRM_3: RNA binding mo 98.1 7.8E-06 1.7E-10 60.7 6.5 59 107-171 2-60 (105)
156 KOG2314 Translation initiation 98.0 2E-05 4.3E-10 72.9 8.1 74 282-355 58-139 (698)
157 PF05172 Nup35_RRM: Nup53/35/4 98.0 4.1E-05 8.9E-10 55.9 8.0 74 282-357 6-89 (100)
158 KOG1995 Conserved Zn-finger pr 98.0 6.6E-06 1.4E-10 72.2 4.2 78 280-357 64-151 (351)
159 KOG3152 TBP-binding protein, a 98.0 4.6E-06 1E-10 69.6 2.7 71 281-351 73-157 (278)
160 KOG1995 Conserved Zn-finger pr 97.9 1.2E-05 2.6E-10 70.6 4.1 84 104-187 64-155 (351)
161 KOG2193 IGF-II mRNA-binding pr 97.9 3.5E-06 7.5E-11 75.1 0.4 135 107-253 2-142 (584)
162 PF14605 Nup35_RRM_2: Nup53/35 97.8 6.5E-05 1.4E-09 48.2 5.7 52 283-339 2-53 (53)
163 KOG1855 Predicted RNA-binding 97.8 3.3E-05 7.1E-10 69.2 5.4 66 280-345 229-309 (484)
164 KOG4676 Splicing factor, argin 97.7 5E-05 1.1E-09 67.2 5.3 75 283-358 8-87 (479)
165 KOG2202 U2 snRNP splicing fact 97.7 2.1E-05 4.5E-10 66.0 2.3 63 297-359 83-147 (260)
166 KOG4849 mRNA cleavage factor I 97.7 7.5E-05 1.6E-09 65.1 5.2 80 105-184 79-160 (498)
167 COG5175 MOT2 Transcriptional r 97.6 0.00013 2.8E-09 63.5 6.5 74 282-355 114-198 (480)
168 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00016 3.6E-09 46.3 4.9 52 107-165 2-53 (53)
169 PF08952 DUF1866: Domain of un 97.6 0.00047 1E-08 53.5 8.1 53 297-356 51-103 (146)
170 KOG2416 Acinus (induces apopto 97.6 0.00015 3.2E-09 67.7 6.2 80 102-187 440-523 (718)
171 KOG0129 Predicted RNA-binding 97.5 0.00036 7.7E-09 64.4 8.2 64 104-167 368-432 (520)
172 KOG0115 RNA-binding protein p5 97.5 0.0002 4.4E-09 60.1 5.2 101 243-358 7-112 (275)
173 KOG0115 RNA-binding protein p5 97.4 0.00047 1E-08 58.0 6.5 91 159-253 5-95 (275)
174 KOG2314 Translation initiation 97.3 0.00063 1.4E-08 63.3 7.1 77 105-182 57-140 (698)
175 KOG1996 mRNA splicing factor [ 97.3 0.00062 1.3E-08 58.2 6.4 58 297-354 301-361 (378)
176 PF08952 DUF1866: Domain of un 97.3 0.0012 2.6E-08 51.2 7.0 74 103-185 24-106 (146)
177 KOG1855 Predicted RNA-binding 97.1 0.00041 8.9E-09 62.4 3.7 67 105-171 230-309 (484)
178 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0019 4E-08 47.3 6.4 78 105-184 5-90 (100)
179 KOG2416 Acinus (induces apopto 97.0 0.00075 1.6E-08 63.2 4.0 73 278-354 440-516 (718)
180 PF08675 RNA_bind: RNA binding 96.7 0.01 2.3E-07 41.2 6.7 55 283-344 10-64 (87)
181 PF15023 DUF4523: Protein of u 96.6 0.014 2.9E-07 44.9 7.6 72 280-357 84-159 (166)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.0036 7.8E-08 51.3 4.8 70 105-174 6-81 (176)
183 PF08675 RNA_bind: RNA binding 96.5 0.014 3E-07 40.6 6.5 57 105-170 8-64 (87)
184 KOG2202 U2 snRNP splicing fact 96.5 0.0013 2.8E-08 55.5 1.6 62 122-184 84-146 (260)
185 KOG1996 mRNA splicing factor [ 96.4 0.0085 1.8E-07 51.5 6.2 64 121-184 301-365 (378)
186 KOG2318 Uncharacterized conser 96.4 0.023 5.1E-07 53.5 9.1 76 103-178 171-298 (650)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 96.3 0.0052 1.1E-07 50.4 4.1 68 282-349 7-82 (176)
188 PF10309 DUF2414: Protein of u 96.3 0.027 5.9E-07 37.0 6.6 54 283-342 6-62 (62)
189 PF07576 BRAP2: BRCA1-associat 96.3 0.037 7.9E-07 41.4 8.2 68 282-349 13-81 (110)
190 KOG4849 mRNA cleavage factor I 96.1 0.0068 1.5E-07 53.3 4.1 77 282-358 80-160 (498)
191 KOG4285 Mitotic phosphoprotein 95.9 0.044 9.6E-07 47.5 7.9 69 283-357 198-267 (350)
192 KOG0804 Cytoplasmic Zn-finger 95.9 0.029 6.3E-07 51.3 7.0 68 282-349 74-142 (493)
193 KOG2253 U1 snRNP complex, subu 95.7 0.01 2.3E-07 56.7 3.6 70 280-356 38-107 (668)
194 PF15023 DUF4523: Protein of u 95.6 0.067 1.5E-06 41.2 7.2 74 103-184 83-160 (166)
195 KOG2068 MOT2 transcription fac 95.6 0.0066 1.4E-07 53.5 1.8 81 106-186 77-163 (327)
196 PF10309 DUF2414: Protein of u 95.4 0.079 1.7E-06 34.9 6.0 54 107-168 6-62 (62)
197 PF07576 BRAP2: BRCA1-associat 95.2 0.25 5.5E-06 36.9 8.8 67 107-175 14-81 (110)
198 PF04847 Calcipressin: Calcipr 94.7 0.11 2.4E-06 42.8 6.5 56 296-355 9-66 (184)
199 KOG2135 Proteins containing th 94.6 0.03 6.5E-07 51.5 3.3 74 281-359 371-445 (526)
200 KOG2135 Proteins containing th 94.4 0.028 6.1E-07 51.7 2.6 83 105-197 371-454 (526)
201 PF04847 Calcipressin: Calcipr 94.2 0.12 2.5E-06 42.6 5.5 61 119-185 8-70 (184)
202 KOG0804 Cytoplasmic Zn-finger 94.0 0.14 3.1E-06 46.9 6.2 70 104-175 72-142 (493)
203 KOG2591 c-Mpl binding protein, 93.8 0.1 2.3E-06 49.0 5.0 71 104-181 173-247 (684)
204 PF03880 DbpA: DbpA RNA bindin 93.8 0.34 7.4E-06 33.4 6.5 59 292-357 11-74 (74)
205 KOG2068 MOT2 transcription fac 93.2 0.049 1.1E-06 48.1 1.8 71 283-353 78-156 (327)
206 KOG4285 Mitotic phosphoprotein 93.2 0.26 5.7E-06 42.9 6.1 71 106-184 197-268 (350)
207 KOG2591 c-Mpl binding protein, 92.9 0.21 4.5E-06 47.1 5.3 68 281-353 174-245 (684)
208 KOG2318 Uncharacterized conser 91.1 1.1 2.4E-05 42.7 8.0 78 280-357 172-305 (650)
209 PF03880 DbpA: DbpA RNA bindin 90.5 1.4 3E-05 30.3 6.3 58 117-183 12-74 (74)
210 PF11767 SET_assoc: Histone ly 90.5 2 4.3E-05 28.8 6.7 56 292-354 10-65 (66)
211 KOG2253 U1 snRNP complex, subu 90.4 0.17 3.8E-06 48.7 2.2 70 104-182 38-107 (668)
212 PF14111 DUF4283: Domain of un 89.8 0.71 1.5E-05 36.7 5.1 96 229-327 54-150 (153)
213 KOG4574 RNA-binding protein (c 89.8 0.21 4.5E-06 49.5 2.2 72 108-185 300-373 (1007)
214 PF04147 Nop14: Nop14-like fam 89.7 0.59 1.3E-05 48.2 5.5 14 118-131 426-439 (840)
215 PF07292 NID: Nmi/IFP 35 domai 87.6 0.45 9.7E-06 33.9 2.1 70 233-303 1-73 (88)
216 KOG4574 RNA-binding protein (c 87.5 0.55 1.2E-05 46.7 3.4 67 285-355 301-369 (1007)
217 KOG1999 RNA polymerase II tran 87.0 3.5 7.6E-05 42.0 8.6 29 146-174 208-236 (1024)
218 PF11767 SET_assoc: Histone ly 86.7 3.5 7.5E-05 27.6 5.9 55 117-180 11-65 (66)
219 PF10567 Nab6_mRNP_bdg: RNA-re 86.6 22 0.00047 31.3 13.2 158 186-344 15-213 (309)
220 PF07292 NID: Nmi/IFP 35 domai 82.8 3.3 7.2E-05 29.5 4.7 58 151-208 1-74 (88)
221 KOG2891 Surface glycoprotein [ 80.7 2.9 6.4E-05 36.0 4.5 36 281-316 148-195 (445)
222 PF10567 Nab6_mRNP_bdg: RNA-re 79.9 4.4 9.5E-05 35.5 5.3 60 280-339 13-81 (309)
223 PF05285 SDA1: SDA1; InterPro 79.0 2.3 5.1E-05 38.6 3.7 9 118-126 190-198 (324)
224 PF03468 XS: XS domain; Inter 78.9 1 2.2E-05 34.1 1.1 49 284-333 10-67 (116)
225 KOG4483 Uncharacterized conser 78.8 1.2 2.7E-05 40.4 1.7 55 105-166 390-445 (528)
226 KOG2891 Surface glycoprotein [ 77.5 0.77 1.7E-05 39.5 0.1 68 106-173 149-247 (445)
227 KOG2295 C2H2 Zn-finger protein 77.4 0.32 6.9E-06 45.9 -2.4 72 106-177 231-302 (648)
228 KOG4483 Uncharacterized conser 77.0 7.3 0.00016 35.6 6.0 66 282-358 391-457 (528)
229 KOG4410 5-formyltetrahydrofola 76.6 5.3 0.00011 34.7 4.8 50 104-159 328-378 (396)
230 TIGR02542 B_forsyth_147 Bacter 74.3 13 0.00029 27.6 5.8 108 112-241 9-130 (145)
231 PF07530 PRE_C2HC: Associated 74.3 6 0.00013 26.7 3.7 64 121-187 2-66 (68)
232 KOG4410 5-formyltetrahydrofola 73.9 15 0.00032 32.1 6.8 47 282-332 330-377 (396)
233 PF02714 DUF221: Domain of unk 72.2 7.8 0.00017 35.2 5.3 56 151-208 1-56 (325)
234 KOG2141 Protein involved in hi 71.1 5.1 0.00011 39.6 3.8 31 323-353 622-652 (822)
235 KOG2038 CAATT-binding transcri 67.5 5.3 0.00011 39.9 3.1 18 109-126 958-975 (988)
236 PF15513 DUF4651: Domain of un 66.6 13 0.00029 24.4 3.9 18 121-138 9-26 (62)
237 PF14111 DUF4283: Domain of un 66.1 12 0.00025 29.6 4.5 96 117-219 28-137 (153)
238 smart00596 PRE_C2HC PRE_C2HC d 64.6 11 0.00025 25.3 3.4 63 121-186 2-65 (69)
239 KOG2141 Protein involved in hi 64.0 7 0.00015 38.7 3.3 13 290-302 552-564 (822)
240 PRK14548 50S ribosomal protein 63.3 30 0.00064 24.5 5.5 57 285-342 23-81 (84)
241 PRK14548 50S ribosomal protein 62.0 23 0.0005 25.0 4.8 57 109-168 23-81 (84)
242 KOG4213 RNA-binding protein La 61.2 13 0.00028 30.2 3.7 55 283-341 112-169 (205)
243 PF15513 DUF4651: Domain of un 61.1 18 0.00039 23.8 3.8 20 297-316 9-28 (62)
244 TIGR03636 L23_arch archaeal ri 61.1 26 0.00057 24.3 4.8 56 109-167 16-73 (77)
245 KOG1295 Nonsense-mediated deca 61.1 11 0.00024 34.4 3.8 65 283-347 8-77 (376)
246 KOG4019 Calcineurin-mediated s 60.1 8.5 0.00018 31.3 2.6 65 283-351 11-80 (193)
247 KOG4365 Uncharacterized conser 59.5 1.7 3.7E-05 40.0 -1.6 71 283-354 4-76 (572)
248 KOG2295 C2H2 Zn-finger protein 59.1 2 4.4E-05 40.8 -1.2 68 281-348 230-299 (648)
249 TIGR03636 L23_arch archaeal ri 58.1 46 0.001 23.0 5.7 56 285-341 16-73 (77)
250 PF14026 DUF4242: Protein of u 57.2 62 0.0013 22.4 6.9 63 285-348 3-72 (77)
251 KOG4019 Calcineurin-mediated s 57.1 9.6 0.00021 30.9 2.4 75 106-186 10-90 (193)
252 KOG1295 Nonsense-mediated deca 56.8 13 0.00028 34.0 3.4 68 106-173 7-77 (376)
253 PF03468 XS: XS domain; Inter 56.5 11 0.00024 28.5 2.6 55 108-165 10-74 (116)
254 PF02724 CDC45: CDC45-like pro 56.0 13 0.00028 37.2 3.7 14 238-251 399-412 (622)
255 TIGR03047 PS_II_psb28 photosys 55.4 21 0.00045 26.4 3.7 26 309-334 12-37 (109)
256 PF02724 CDC45: CDC45-like pro 54.9 9 0.00019 38.3 2.4 15 237-251 395-409 (622)
257 CHL00128 psbW photosystem II p 54.3 14 0.00031 27.4 2.7 26 309-334 15-40 (113)
258 PF09073 BUD22: BUD22; InterP 53.9 23 0.00049 33.7 4.9 23 331-353 408-430 (432)
259 PF05285 SDA1: SDA1; InterPro 53.8 11 0.00023 34.4 2.5 6 198-203 231-236 (324)
260 PRK13610 photosystem II reacti 51.7 22 0.00048 26.3 3.3 40 284-337 10-49 (113)
261 KOG4213 RNA-binding protein La 50.7 20 0.00042 29.2 3.2 58 106-167 111-169 (205)
262 cd04889 ACT_PDH-BS-like C-term 50.7 56 0.0012 20.4 5.0 42 297-339 13-55 (56)
263 COG5638 Uncharacterized conser 50.5 45 0.00097 30.8 5.8 38 104-141 144-186 (622)
264 COG4547 CobT Cobalamin biosynt 50.1 25 0.00053 33.1 4.2 14 169-182 422-435 (620)
265 KOG4365 Uncharacterized conser 49.8 3.1 6.8E-05 38.4 -1.5 78 107-185 4-81 (572)
266 PF11823 DUF3343: Protein of u 49.3 25 0.00054 23.9 3.3 28 323-350 2-29 (73)
267 COG5193 LHP1 La protein, small 47.0 9.9 0.00021 34.9 1.2 62 105-166 173-244 (438)
268 COG5638 Uncharacterized conser 46.0 69 0.0015 29.7 6.2 70 280-349 144-285 (622)
269 KOG2773 Apoptosis antagonizing 45.3 15 0.00033 34.3 2.1 16 285-300 384-399 (483)
270 TIGR01651 CobT cobaltochelatas 44.3 45 0.00097 32.8 5.1 14 106-119 295-308 (600)
271 TIGR02542 B_forsyth_147 Bacter 42.2 62 0.0013 24.2 4.4 43 290-332 82-129 (145)
272 KOG4008 rRNA processing protei 41.3 25 0.00054 29.9 2.6 35 280-314 38-72 (261)
273 KOG2187 tRNA uracil-5-methyltr 40.0 30 0.00066 33.2 3.2 35 322-356 63-97 (534)
274 KOG4008 rRNA processing protei 38.9 22 0.00048 30.2 1.9 36 102-137 36-71 (261)
275 KOG3130 Uncharacterized conser 38.7 33 0.00071 31.6 3.1 19 110-128 354-372 (514)
276 cd04883 ACT_AcuB C-terminal AC 36.5 1.2E+02 0.0027 19.8 6.6 53 295-348 14-69 (72)
277 PF03439 Spt5-NGN: Early trans 36.0 71 0.0015 22.4 4.0 34 132-170 33-66 (84)
278 PF00403 HMA: Heavy-metal-asso 34.0 1.3E+02 0.0028 19.2 6.2 54 284-341 1-58 (62)
279 COG4547 CobT Cobalamin biosynt 33.8 61 0.0013 30.7 4.1 10 296-305 563-572 (620)
280 PLN00039 photosystem II reacti 33.2 57 0.0012 24.2 3.1 27 309-335 14-40 (111)
281 PF03439 Spt5-NGN: Early trans 33.0 1.2E+02 0.0027 21.2 4.8 37 308-347 33-69 (84)
282 COG1369 POP5 RNase P/RNase MRP 32.7 1.5E+02 0.0032 22.7 5.3 36 322-359 67-102 (124)
283 cd04908 ACT_Bt0572_1 N-termina 32.3 1.4E+02 0.0031 19.3 8.0 48 296-346 15-63 (66)
284 cd04882 ACT_Bt0572_2 C-termina 32.2 1.4E+02 0.0029 19.0 5.6 48 297-345 14-62 (65)
285 KOG0156 Cytochrome P450 CYP2 s 31.7 1.1E+02 0.0024 29.7 5.7 59 286-352 36-97 (489)
286 PF09073 BUD22: BUD22; InterP 31.6 82 0.0018 30.0 4.8 7 159-165 321-327 (432)
287 KOG2773 Apoptosis antagonizing 31.1 35 0.00075 32.1 2.1 8 348-355 445-452 (483)
288 PF05764 YL1: YL1 nuclear prot 31.0 40 0.00087 29.2 2.4 9 196-204 183-191 (240)
289 COG5507 Uncharacterized conser 31.0 64 0.0014 23.3 2.9 21 148-168 66-86 (117)
290 PRK13612 photosystem II reacti 30.9 54 0.0012 24.5 2.7 27 309-335 17-43 (113)
291 TIGR00927 2A1904 K+-dependent 30.1 36 0.00077 35.5 2.2 10 107-116 905-914 (1096)
292 COG0150 PurM Phosphoribosylami 28.8 21 0.00045 32.3 0.3 48 296-345 275-322 (345)
293 TIGR01651 CobT cobaltochelatas 26.9 83 0.0018 31.0 3.9 11 296-306 542-552 (600)
294 PRK03717 ribonuclease P protei 25.9 1.4E+02 0.003 22.7 4.3 35 323-359 66-102 (120)
295 PRK05738 rplW 50S ribosomal pr 25.2 1.7E+02 0.0038 21.0 4.5 34 109-142 22-57 (92)
296 PF11823 DUF3343: Protein of u 24.5 2.3E+02 0.0049 19.1 5.5 61 149-211 2-63 (73)
297 KOG0650 WD40 repeat nucleolar 24.4 1.5E+02 0.0032 29.2 5.0 13 107-119 119-131 (733)
298 cd04879 ACT_3PGDH-like ACT_3PG 24.4 2E+02 0.0043 18.3 5.2 39 294-332 11-50 (71)
299 PF08734 GYD: GYD domain; Int 24.1 2.7E+02 0.0059 19.8 5.9 45 297-343 23-68 (91)
300 COG5193 LHP1 La protein, small 23.7 38 0.00082 31.3 1.0 58 283-340 175-244 (438)
301 PTZ00191 60S ribosomal protein 23.2 2.8E+02 0.0061 21.9 5.5 55 285-340 84-140 (145)
302 PF04026 SpoVG: SpoVG; InterP 22.7 1.7E+02 0.0036 20.7 3.9 26 132-157 2-27 (84)
303 PRK12280 rplW 50S ribosomal pr 22.6 2E+02 0.0044 23.0 4.7 35 108-142 23-59 (158)
304 cd04905 ACT_CM-PDT C-terminal 22.1 2.6E+02 0.0057 18.9 5.5 49 296-344 15-68 (80)
305 PF02994 Transposase_22: L1 tr 21.4 2E+02 0.0044 26.7 5.3 75 282-356 190-286 (370)
306 PF06014 DUF910: Bacterial pro 21.0 63 0.0014 21.3 1.3 17 296-312 4-20 (62)
307 cd04903 ACT_LSD C-terminal ACT 20.7 2.4E+02 0.0052 17.9 5.3 47 295-342 12-59 (71)
308 PF06613 KorB_C: KorB C-termin 20.4 1.2E+02 0.0026 19.8 2.4 21 136-157 20-40 (60)
309 PF08544 GHMP_kinases_C: GHMP 20.3 2.9E+02 0.0063 18.7 6.0 44 297-343 37-80 (85)
310 PF11061 DUF2862: Protein of u 20.2 2E+02 0.0042 19.2 3.5 38 290-332 12-52 (64)
311 KOG3130 Uncharacterized conser 20.1 74 0.0016 29.4 2.0 7 290-296 447-453 (514)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.6e-46 Score=344.60 Aligned_cols=252 Identities=21% Similarity=0.384 Sum_probs=220.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+.++|||+|||+.+|+++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|.+||..|||..+.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred C------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccC
Q 018143 185 T------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (360)
Q Consensus 185 ~------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~ 258 (360)
+ ..+|||+|||..+++++|+.+|++||. |..++++.+ ..++.++|||||.|.+.++|..|+..|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4 357999999999999999999999998 999999887 45778999999999999999999999988755544
Q ss_pred CCCCeeeecCCCCCCCc---------------------------------------------------------------
Q 018143 259 GNTPTISWADPKSTPDH--------------------------------------------------------------- 275 (360)
Q Consensus 259 ~~~~~v~~~~~~~~~~~--------------------------------------------------------------- 275 (360)
...+.+.|+........
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 46667776643321000
Q ss_pred -----------------------cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeC
Q 018143 276 -----------------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYA 330 (360)
Q Consensus 276 -----------------------~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~ 330 (360)
......+.+|||+|||+.+++++|+++|++||.|.+|+|+.+..++ ||||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 0000112369999999999999999999999999999999887433 999999999
Q ss_pred CHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018143 331 ERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 331 ~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
+.++|.+|+..|||..|+||.|+|.+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 9999999999999999999999998753
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.8e-45 Score=317.95 Aligned_cols=246 Identities=41% Similarity=0.739 Sum_probs=235.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc-CCeEEEEe
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL-KGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~-~g~~l~v~ 181 (360)
++.++.|||+.||.++.+++|.-||...|+|-.++|++++.+|.++|||||.|.+++.|+.|++.||+..| .|+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred ecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCC
Q 018143 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (360)
Q Consensus 182 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (360)
.+..+++|||+|+|++++.++|.+.+++.++.|..|-+...+....+.||||||.|.+...|..|.+.|....+++.|..
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018143 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
+.|.|+.|....... .....+.|||+||+.++|++.|..+|++||.|.+|+.++ .||||.|.+.++|.+|++.
T Consensus 240 ~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r------DYaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR------DYAFVHFAEREDAVKAMKE 312 (506)
T ss_pred ceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc------ceeEEeecchHHHHHHHHH
Confidence 999999999888777 447789999999999999999999999999999999885 4999999999999999999
Q ss_pred hCCceeCCeeEeEE
Q 018143 342 TEKYEIDGKSHLHF 355 (360)
Q Consensus 342 lng~~~~G~~l~v~ 355 (360)
+||+.|+|..|-|.
T Consensus 313 ~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 313 TNGKELDGSPIEVT 326 (506)
T ss_pred hcCceecCceEEEE
Confidence 99999999999874
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=6.5e-43 Score=329.15 Aligned_cols=247 Identities=34% Similarity=0.617 Sum_probs=221.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccC-CeEEEEe
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 181 (360)
+...++|||+|||+++++++|+.+|++||.|..++|+++ .+|+++|||||+|.+.++|.+||..||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 78999999999999999999999999998885 8999999
Q ss_pred ecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCC
Q 018143 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (360)
Q Consensus 182 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (360)
.+...++|||+|||+.++.++|.+.|.+++..+..+.+...+...++++|||||.|.+..+|..|+..++...+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99999999999999999999999999999865766666555455678899999999999999999999887777889999
Q ss_pred CeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHH
Q 018143 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (360)
+.|.|+.+........ ....++|||+|||..+++++|+++|++| |.|.+|.+++ +||||+|.+.++|.+|+
T Consensus 214 I~VdwA~p~~~~d~~~-~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDV-MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEEeecccccccccc-cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec------CeEEEEeCCHHHHHHHH
Confidence 9999998875443222 2446799999999999999999999999 9999998763 79999999999999999
Q ss_pred HhhCCceeCCeeEeEEee
Q 018143 340 KDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 340 ~~lng~~~~G~~l~v~p~ 357 (360)
..|||..|.|+.|.|.+.
T Consensus 287 ~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLA 304 (578)
T ss_pred HHhCCCEECCEEEEEEEc
Confidence 999999999999999753
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.8e-42 Score=278.62 Aligned_cols=249 Identities=22% Similarity=0.389 Sum_probs=223.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..+.|.|.-||..+|+++|+.||...|.|.+|++++++.+|.+.||+||.|..+++|.+|+..|||..+..++|+|.+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccC
Q 018143 185 TK------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (360)
Q Consensus 185 ~~------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~ 258 (360)
|+ ..|||++||+.+++.+|..+|++||. |..-++.-+ ..++.++|.+||.|..+..|..|+..+|+......
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 86 47999999999999999999999999 777777777 67899999999999999999999999998876666
Q ss_pred CCCCeeeecCCCCCCCc---------------------------------------------------------cccccc
Q 018143 259 GNTPTISWADPKSTPDH---------------------------------------------------------SAAASQ 281 (360)
Q Consensus 259 ~~~~~v~~~~~~~~~~~---------------------------------------------------------~~~~~~ 281 (360)
.-+|.|.++..+..... ++....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 66777777655432210 000111
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++|||.||.+++.+.-|.++|++||.|..|+++++-.+. ||||||.+.+-+.|..|+..|||+.+++|.|.|.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 5899999999999999999999999999999999988755 9999999999999999999999999999999875
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=8.5e-41 Score=325.22 Aligned_cols=243 Identities=27% Similarity=0.475 Sum_probs=218.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC--
Q 018143 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET-- 185 (360)
Q Consensus 108 ~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~-- 185 (360)
+|||+|||+++|+++|+++|++||.|.+|+++++..|++++|||||+|.+.++|.+|+..+|+..+.|++|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCC
Q 018143 186 ------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (360)
Q Consensus 186 ------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 259 (360)
..+|||+|||..++.+.|+.+|+.||. |..|+++.+ .+++++|||||.|.+.++|.+|+..+++. .+.+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~-i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~--~~~~ 156 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN-ILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGM--LLND 156 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCC-cceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhccc--EecC
Confidence 257999999999999999999999998 999999887 46778999999999999999999998754 6678
Q ss_pred CCCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHH
Q 018143 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338 (360)
Q Consensus 260 ~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A 338 (360)
+.+.+....+..... .......++|||+|||..+|+++|+++|+.||.|.++.+..+..+. +|||||.|.++++|.+|
T Consensus 157 ~~i~v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~A 235 (562)
T TIGR01628 157 KEVYVGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKA 235 (562)
T ss_pred ceEEEeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHH
Confidence 888887655443322 1123445789999999999999999999999999999998887665 89999999999999999
Q ss_pred HHhhCCceeC----CeeEeEEe
Q 018143 339 VKDTEKYEID----GKSHLHFP 356 (360)
Q Consensus 339 ~~~lng~~~~----G~~l~v~p 356 (360)
+..|||..|. |+.|.|.+
T Consensus 236 v~~l~g~~i~~~~~g~~l~v~~ 257 (562)
T TIGR01628 236 VEEMNGKKIGLAKEGKKLYVGR 257 (562)
T ss_pred HHHhCCcEecccccceeeEeec
Confidence 9999999999 99888754
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5e-39 Score=312.81 Aligned_cols=249 Identities=26% Similarity=0.454 Sum_probs=217.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+++++++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|+..+||..+.|+.|.|....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 35689999999999999999999999999999999875 58899999999999999999999999999999999986543
Q ss_pred C-----------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhcc
Q 018143 185 T-----------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (360)
Q Consensus 185 ~-----------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~ 253 (360)
. .++|||+|||..+++++|+++|+.||. |..+.++++ .+++++|||||.|.+.++|.+|+..+++.
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 2 256999999999999999999999998 999999987 46788999999999999999999999866
Q ss_pred Cccc--CCCCCeeeecCCCCCCC------------ccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC
Q 018143 254 NFKL--DGNTPTISWADPKSTPD------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS 319 (360)
Q Consensus 254 ~~~~--~~~~~~v~~~~~~~~~~------------~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~ 319 (360)
.+.. .++.+.+.++....... ........++|||+|||..+++++|+++|++||.|.+|+++.+..
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~ 322 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK 322 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC
Confidence 4321 17788887765554321 011123457899999999999999999999999999999988865
Q ss_pred CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 320 GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 320 ~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+. +|||||+|.+.++|.+|+..|||+.|+|++|.|.+.
T Consensus 323 g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 323 GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 55 999999999999999999999999999999999764
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.2e-38 Score=298.36 Aligned_cols=237 Identities=22% Similarity=0.252 Sum_probs=199.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHh--cCCccCCeEEEEee
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL--HSKELKGKTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~ 182 (360)
++++|||+|||+.+|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..+ ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999853 689999999999999999864 77899999999998
Q ss_pred cCCc------------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHH
Q 018143 183 SETK------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (360)
Q Consensus 183 ~~~~------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (360)
+... .+|+|.||++.++.+.|+++|+.||. |..+.++++. .+++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~~-----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTKN-----NVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEecC-----CceEEEEEECCHHHHH
Confidence 7421 15899999999999999999999998 9999988752 2468999999999999
Q ss_pred HHHHHHhccCcccCCCCCeeeecCCCCC--------C-----------------------Cc------------------
Q 018143 245 YSRQKMLNANFKLDGNTPTISWADPKST--------P-----------------------DH------------------ 275 (360)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-----------------------~~------------------ 275 (360)
+|+..|++..+.-.+..+.+.|+.+..- . ..
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 9999999876543334454444432110 0 00
Q ss_pred ----------------------------------------cccccccceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEc
Q 018143 276 ----------------------------------------SAAASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVM 314 (360)
Q Consensus 276 ----------------------------------------~~~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i 314 (360)
.....++++|||+|||. .+|+++|+.+|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 00012457999999997 6999999999999999999999
Q ss_pred CCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 315 PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 315 ~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+.++ +|||||+|.++++|.+|+..|||..|.|++|.|.+
T Consensus 309 ~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 309 MKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred EeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 8764 48999999999999999999999999999999975
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5.3e-38 Score=298.96 Aligned_cols=248 Identities=26% Similarity=0.389 Sum_probs=213.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|.+||. |+|..+.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 457899999999999999999999999999999999999999999999999999999999995 8999999999999875
Q ss_pred CC------------------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHH
Q 018143 184 ET------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245 (360)
Q Consensus 184 ~~------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~ 245 (360)
.. ..+|||+|||..+++++|+.+|++||. |..+.++++ ..++.++|||||.|.+.+.|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRD-PETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHHH
Confidence 32 267999999999999999999999998 999999988 5678899999999999999999
Q ss_pred HHHHHhccCcccCCCCCeeeecCCCCCCC---------------------------------------------------
Q 018143 246 SRQKMLNANFKLDGNTPTISWADPKSTPD--------------------------------------------------- 274 (360)
Q Consensus 246 a~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------------- 274 (360)
|+..|++ +.+.|+.+.|.|+.......
T Consensus 244 A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T TIGR01622 244 ALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIAL 321 (457)
T ss_pred HHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhh
Confidence 9999986 57789999998843110000
Q ss_pred ---------------------------------ccccccccceEEEcCCCCCCCH----------HHHHHHHhhcCCeeE
Q 018143 275 ---------------------------------HSAAASQVKALYVKNIPDNTST----------EKIKELFQRHGEVTK 311 (360)
Q Consensus 275 ---------------------------------~~~~~~~~~~l~V~nlp~~~t~----------~~L~~~f~~~G~v~~ 311 (360)
.......+++|+|.||....+. ++|++.|++||.|..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~ 401 (457)
T TIGR01622 322 MQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVH 401 (457)
T ss_pred hccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeE
Confidence 0001134578999999644442 689999999999999
Q ss_pred EEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018143 312 VVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 312 v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
|.+..... .|++||+|.++++|.+|++.|||+.|+|+.|.+..+.
T Consensus 402 v~v~~~~~--~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 402 IYVDTKNS--AGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred EEEeCCCC--ceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 99874432 4999999999999999999999999999999998764
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.8e-38 Score=282.21 Aligned_cols=248 Identities=23% Similarity=0.451 Sum_probs=218.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
+.||||++||+.++.++|.++|+.+|+|..+.++.++.++.++|||||.|.-.+++++|+..+++..+.|+.|+|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred c--------------------------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEE
Q 018143 186 K--------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFS 233 (360)
Q Consensus 186 ~--------------------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~ 233 (360)
+ .+|+|+||||.+....|..+|+.||. |..+.|++. ..++-.|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 2 36999999999999999999999998 999999865 445555999
Q ss_pred EEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCcccc-----------------------------------
Q 018143 234 FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA----------------------------------- 278 (360)
Q Consensus 234 ~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------------------------------- 278 (360)
||+|....+|..|+..+|+. .+.||++.|.|+.+.........
T Consensus 162 FV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 99999999999999999765 78999999999876642211000
Q ss_pred -------------------------------------------------ccccceEEEcCCCCCCCHHHHHHHHhhcCCe
Q 018143 279 -------------------------------------------------ASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309 (360)
Q Consensus 279 -------------------------------------------------~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v 309 (360)
.....+|||+|||+++|+++|.+.|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 0002789999999999999999999999999
Q ss_pred eEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhh-----CC-ceeCCeeEeEEeee
Q 018143 310 TKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT-----EK-YEIDGKSHLHFPVF 358 (360)
Q Consensus 310 ~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l-----ng-~~~~G~~l~v~p~~ 358 (360)
.++.|+.++.+. +|.|||.|.+..+|+.||... .| ..+.||.|.|.+..
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAV 376 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeecc
Confidence 999999888766 999999999999999999987 24 78999999987754
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=6.2e-37 Score=295.61 Aligned_cols=243 Identities=22% Similarity=0.375 Sum_probs=200.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccC------------CCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCC
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPI------------GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~------------G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~ 171 (360)
...++|||+|||+.+|+++|+.+|.+| +.|..+.+ ++.+|||||+|.+.++|..|| .|+|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 356799999999999999999999875 34444544 456899999999999999999 59999
Q ss_pred ccCCeEEEEeecC-----------------------------------CccceecCCCCCCCCHHHHHHHHHhhCCceeE
Q 018143 172 ELKGKTIRCSLSE-----------------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216 (360)
Q Consensus 172 ~~~g~~l~v~~~~-----------------------------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~ 216 (360)
.+.|+.|.|.... ..++|||+|||+.+++++|+++|+.||. |..
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~ 324 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKA 324 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeE
Confidence 9999999986321 1257999999999999999999999998 999
Q ss_pred EEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCc---------------------
Q 018143 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH--------------------- 275 (360)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------------- 275 (360)
+.++++ ..++.++|||||.|.+...|..|+..|++. .+.|+.+.|.++........
T Consensus 325 ~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (509)
T TIGR01642 325 FNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSI 401 (509)
T ss_pred EEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccCCCCCCccccccccccccccccchhhh
Confidence 999988 568899999999999999999999999754 67888898888754322110
Q ss_pred -cccccccceEEEcCCCCCC----------CHHHHHHHHhhcCCeeEEEcCCCCC----C-CCCeEEEEeCCHHHHHHHH
Q 018143 276 -SAAASQVKALYVKNIPDNT----------STEKIKELFQRHGEVTKVVMPPGKS----G-KRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 276 -~~~~~~~~~l~V~nlp~~~----------t~~~L~~~f~~~G~v~~v~i~~~~~----~-~kg~afV~F~~~~~A~~A~ 339 (360)
.....++++|+|.|++..- ..++|+++|++||.|..|.|+.... + ..|+|||+|.+.++|.+|+
T Consensus 402 ~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~ 481 (509)
T TIGR01642 402 LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAM 481 (509)
T ss_pred ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHH
Confidence 0012356889999996321 1268999999999999999986521 1 2689999999999999999
Q ss_pred HhhCCceeCCeeEeEEee
Q 018143 340 KDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 340 ~~lng~~~~G~~l~v~p~ 357 (360)
..|||+.|+|+.|.+..+
T Consensus 482 ~~lnGr~~~gr~v~~~~~ 499 (509)
T TIGR01642 482 EGMNGRKFNDRVVVAAFY 499 (509)
T ss_pred HHcCCCEECCeEEEEEEe
Confidence 999999999999988765
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=5.9e-36 Score=282.41 Aligned_cols=161 Identities=22% Similarity=0.427 Sum_probs=146.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+++++|+.+|.+||.|.+|+++.++.||+++|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CC-----------------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHH
Q 018143 184 ET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (360)
Q Consensus 184 ~~-----------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a 246 (360)
.. .++|||+|||..+++++|+++|+.||. |..++++++ ..+++++|||||.|.+.++|.+|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEec-CCCCCcCCeEEEEECCHHHHHHH
Confidence 31 258999999999999999999999998 999999998 46788999999999999999999
Q ss_pred HHHHhccCcccCCCCCeeeecC
Q 018143 247 RQKMLNANFKLDGNTPTISWAD 268 (360)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~ 268 (360)
+..+|+. .++|+.++|.++.
T Consensus 263 I~amNg~--elgGr~LrV~kAi 282 (612)
T TIGR01645 263 IASMNLF--DLGGQYLRVGKCV 282 (612)
T ss_pred HHHhCCC--eeCCeEEEEEecC
Confidence 9999744 6677777766544
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.5e-35 Score=279.05 Aligned_cols=233 Identities=17% Similarity=0.254 Sum_probs=196.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC--eEEEEeec
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLS 183 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 183 (360)
..+|||+||++.+|+++|+++|+.||.|.+|.+.++.. +|+|||+|.+.++|.+|+..|||..|.| +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 45799999999999999999999999999999987542 4789999999999999999999999864 35655443
Q ss_pred C-------------------------------------------------------------------------------
Q 018143 184 E------------------------------------------------------------------------------- 184 (360)
Q Consensus 184 ~------------------------------------------------------------------------------- 184 (360)
+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------CccceecCCCCC-CCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHH
Q 018143 185 ----------------------TKNRLFIGNVPK-NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (360)
Q Consensus 185 ----------------------~~~~l~v~nl~~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~ 241 (360)
+..+|||+|||+ .++++.|+.+|+.||. |..++++++ .+|+|||+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 124799999998 6999999999999998 999999886 3689999999999
Q ss_pred HHHHHHHHHhccCcccCCCCCeeeecCCCCCCCc-------------------------c------ccccccceEEEcCC
Q 018143 242 CADYSRQKMLNANFKLDGNTPTISWADPKSTPDH-------------------------S------AAASQVKALYVKNI 290 (360)
Q Consensus 242 ~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------~------~~~~~~~~l~V~nl 290 (360)
+|..|+..|++. .+.|+.+.|.++........ . ....++++|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999865 66899999987644211000 0 00134679999999
Q ss_pred CCCCCHHHHHHHHhhcCC--eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018143 291 PDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 291 p~~~t~~~L~~~f~~~G~--v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
|..+++++|+++|+.||. |..|++.....+++|+|||+|.+.++|.+||..|||+.|.|+.
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 999999999999999998 8888887665555799999999999999999999999999885
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-35 Score=242.33 Aligned_cols=221 Identities=20% Similarity=0.377 Sum_probs=184.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...+||||+||...+|++-|..||++.|+|..++++.+.. -|...+.. ....+....+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~--------~v~wa~~p-------~nQsk~t~~~------- 61 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL--------KVNWATAP-------GNQSKPTSNQ------- 61 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh--------ccccccCc-------ccCCCCcccc-------
Confidence 3578999999999999999999999999999999987621 00000000 0000110111
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCe
Q 018143 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
.-.+||+.|...++.+.|++.|.+||+ |..++++|| ..+++++||+||.|.+..+|++|+..|++. .+++|.|+
T Consensus 62 --hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IR 135 (321)
T KOG0148|consen 62 --HFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIR 135 (321)
T ss_pred --ceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eeccceee
Confidence 234789999999999999999999999 999999999 689999999999999999999999999866 88999999
Q ss_pred eeecCCCCCCCcccc----------ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHH
Q 018143 264 ISWADPKSTPDHSAA----------ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333 (360)
Q Consensus 264 v~~~~~~~~~~~~~~----------~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~ 333 (360)
..|+.++........ ....++|||+||+..+|++.|++.|+.||.|..||+.+++ |||||.|.+++
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q----GYaFVrF~tkE 211 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ----GYAFVRFETKE 211 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc----ceEEEEecchh
Confidence 999988863222111 2236899999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHhhCCceeCCeeEeEEe
Q 018143 334 SALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 334 ~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+|.+||..+||..|.|+.|+|.|
T Consensus 212 aAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEec
Confidence 99999999999999999999976
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=251.55 Aligned_cols=248 Identities=27% Similarity=0.495 Sum_probs=213.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc-cCC--eEEEEe
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKG--KTIRCS 181 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~-~~g--~~l~v~ 181 (360)
+..++||+.||..+++.+|+.+|.+||.|..|.|++|+.|+.++|+|||.|.+.++|.+|+.+||+.. |-| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 45679999999999999999999999999999999999999999999999999999999999998754 544 678888
Q ss_pred ecCC-------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccC
Q 018143 182 LSET-------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254 (360)
Q Consensus 182 ~~~~-------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~ 254 (360)
++.. .++|||+.|++.+++.+++++|++||. |+.|.|+++ ..+.+||++||.|.+++.|..|++.||+..
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhccce
Confidence 8764 467899999999999999999999999 999999998 578899999999999999999999998642
Q ss_pred -cccCCCCCeeeecCCCCCCCcccc-------------------------------------------------------
Q 018143 255 -FKLDGNTPTISWADPKSTPDHSAA------------------------------------------------------- 278 (360)
Q Consensus 255 -~~~~~~~~~v~~~~~~~~~~~~~~------------------------------------------------------- 278 (360)
+.....++.|.|+++.........
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 334445667777776652210000
Q ss_pred --------------------------c--------------c---------c----------------------------
Q 018143 279 --------------------------A--------------S---------Q---------------------------- 281 (360)
Q Consensus 279 --------------------------~--------------~---------~---------------------------- 281 (360)
. . .
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence 0 0 0
Q ss_pred --------------------------------------------------------------------------cceEEE
Q 018143 282 --------------------------------------------------------------------------VKALYV 287 (360)
Q Consensus 282 --------------------------------------------------------------------------~~~l~V 287 (360)
...|||
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfi 429 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFI 429 (510)
T ss_pred ccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceee
Confidence 256999
Q ss_pred cCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 288 ~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.+||...-+.+|...|..||.|.+..+..++.++ ++|+||.|++..+|..||..|||+.++++++.|-
T Consensus 430 yhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQ 499 (510)
T KOG0144|consen 430 YHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQ 499 (510)
T ss_pred eeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEE
Confidence 9999999999999999999999988777777666 9999999999999999999999999999998763
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-31 Score=240.17 Aligned_cols=237 Identities=25% Similarity=0.450 Sum_probs=211.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCCc
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
.+|||+ +++|+..|.++|+++|+|.+++++++. | +.|||||.|.++.+|.+||..+|...+.|+++++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999999 6 9999999999999999999999999999999999998754
Q ss_pred -cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeee
Q 018143 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 187 -~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
..+||.||+..++...|..+|+.||+ |.+|++..+.. | ++|| ||+|.+...|.+|+..+|+. .+.+..+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~~~--g-~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATDEN--G-SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEcCC--C-ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEe
Confidence 45999999999999999999999999 99999999833 3 8999 99999999999999999865 5678888887
Q ss_pred ecCCCCCCCccc--cccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhh
Q 018143 266 WADPKSTPDHSA--AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 266 ~~~~~~~~~~~~--~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l 342 (360)
...+........ ....-+.++|.|++..+++..|..+|+.+|.|.++.++.+..+. +|||||.|.++++|..|+..|
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhc
Confidence 666554322111 23445789999999999999999999999999999999888876 999999999999999999999
Q ss_pred CCceeCCeeEeEEe
Q 018143 343 EKYEIDGKSHLHFP 356 (360)
Q Consensus 343 ng~~~~G~~l~v~p 356 (360)
|+..+.|..+.|.+
T Consensus 229 ~~~~~~~~~~~V~~ 242 (369)
T KOG0123|consen 229 NGKIFGDKELYVGR 242 (369)
T ss_pred cCCcCCccceeecc
Confidence 99999998888765
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.4e-30 Score=232.88 Aligned_cols=168 Identities=23% Similarity=0.441 Sum_probs=154.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+++|+++|+++|+.||.|..|+|++++.|++++|||||+|.+.++|.+|+..|++..+.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcc
Q 018143 183 SET------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256 (360)
Q Consensus 183 ~~~------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~ 256 (360)
+.+ ..+|||+|||+.+++++|+++|++||. |..++++++ ..+++++|||||+|.+.++|.+|+..|++..+.
T Consensus 184 a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~-V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 184 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ-IVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ccccccccccceeEEeCCCCcccHHHHHHHHHhcCC-EEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 764 467999999999999999999999998 999999988 678899999999999999999999999987666
Q ss_pred cCCCCCeeeecCCCCC
Q 018143 257 LDGNTPTISWADPKST 272 (360)
Q Consensus 257 ~~~~~~~v~~~~~~~~ 272 (360)
..++.+.|.++.....
T Consensus 262 g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 262 GGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCceeEEEEECCcccc
Confidence 6667888988876543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.2e-30 Score=234.25 Aligned_cols=245 Identities=28% Similarity=0.487 Sum_probs=212.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+.+.|||.||+++++...|.++|+.||.|.+|++..+.. | ++|| ||+|.+.+.|.+|+..+||..+.|++|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 344499999999999999999999999999999999876 5 9999 999999999999999999999999999996654
Q ss_pred C--------------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHH
Q 018143 185 T--------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250 (360)
Q Consensus 185 ~--------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~ 250 (360)
. -..+++.|++...++..|..+|+.+|+ |..+.++.+ ..+.+++|+||.|.+.+.|..|+..+
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhc
Confidence 3 256899999999999999999999999 999999987 56669999999999999999999999
Q ss_pred hccCcccCCCCCeeeecCCCCCCC------------ccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC
Q 018143 251 LNANFKLDGNTPTISWADPKSTPD------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK 318 (360)
Q Consensus 251 ~~~~~~~~~~~~~v~~~~~~~~~~------------~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~ 318 (360)
++..+ .+..+.+..+....... ..........|+|+||+..++.+.|+.+|+.||.|.+++|..+.
T Consensus 229 ~~~~~--~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 229 NGKIF--GDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred cCCcC--CccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 87654 35666665554422111 11113346789999999999999999999999999999998887
Q ss_pred CCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 319 SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 319 ~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+. +|||||.|.+.++|.+|+..+||..+.|+.|.|.+.
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~ 346 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVA 346 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHH
Confidence 777 999999999999999999999999999998887653
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.6e-30 Score=219.32 Aligned_cols=245 Identities=20% Similarity=0.392 Sum_probs=206.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
-++|||+.|.+.+.++.|+..|.+||+|++|.+.-++.|++.+|||||+|.-++.|+.|++.|||..++||.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999976432
Q ss_pred -----------------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHH
Q 018143 186 -----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248 (360)
Q Consensus 186 -----------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~ 248 (360)
-+++||..+....++++|+.+|+.||+ |..|.+.+.+ ..+..+||+|++|.+..+...|+.
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeeccC-CCCCccceeeEEeccccchHHHhh
Confidence 378999999999999999999999999 9999999984 456789999999999999999998
Q ss_pred HHhccCcccCCCCCeeeecCCCCCCCccc---------------------------------------------------
Q 018143 249 KMLNANFKLDGNTPTISWADPKSTPDHSA--------------------------------------------------- 277 (360)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------------------------------------------- 277 (360)
.+| -+.++|+.++|..+-.....--.+
T Consensus 271 sMN--lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 271 SMN--LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hcc--hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 875 557777777665442221000000
Q ss_pred ------------------------ccc-----------------------------------------------------
Q 018143 278 ------------------------AAS----------------------------------------------------- 280 (360)
Q Consensus 278 ------------------------~~~----------------------------------------------------- 280 (360)
+..
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence 000
Q ss_pred ----------------ccceEEEcCC--CCCCCH---HHHHHHHhhcCCeeEEEcCCCCCCC------CCeEEEEeCCHH
Q 018143 281 ----------------QVKALYVKNI--PDNTST---EKIKELFQRHGEVTKVVMPPGKSGK------RDFGFIHYAERS 333 (360)
Q Consensus 281 ----------------~~~~l~V~nl--p~~~t~---~~L~~~f~~~G~v~~v~i~~~~~~~------kg~afV~F~~~~ 333 (360)
.++.|.++|. |.++++ .+|++.|++||.|.+|.|...+.+. ---.||+|....
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 0467888985 556554 6889999999999999998877654 113699999999
Q ss_pred HHHHHHHhhCCceeCCeeEeE
Q 018143 334 SALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 334 ~A~~A~~~lng~~~~G~~l~v 354 (360)
.+.+|...|+|+.|+||++..
T Consensus 509 e~~rak~ALdGRfFgGr~VvA 529 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVA 529 (544)
T ss_pred HHHHHHHhhccceecCceeeh
Confidence 999999999999999999864
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.2e-30 Score=230.84 Aligned_cols=234 Identities=23% Similarity=0.404 Sum_probs=193.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.-+|.|+||||.|...+|+.+|++||.|..|.|++.+. |+..|||||.|....+|..|+..+|+..|.||+|-|.||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 56899999999999999999999999999999998777 56669999999999999999999999999999999999843
Q ss_pred c-------------------------------------------------------------------------------
Q 018143 186 K------------------------------------------------------------------------------- 186 (360)
Q Consensus 186 ~------------------------------------------------------------------------------- 186 (360)
+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 2
Q ss_pred -----------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHH
Q 018143 187 -----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (360)
Q Consensus 187 -----------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 249 (360)
.++||+|||+.++++.|.+.|++||+ |..+.++.+ ..+++++|.|||.|.+...+..|+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHh
Confidence 37999999999999999999999999 999999999 68999999999999999999999987
Q ss_pred H---hccC-cccCCCCCeeeecCCCCCCCcc-------------------------------------------------
Q 018143 250 M---LNAN-FKLDGNTPTISWADPKSTPDHS------------------------------------------------- 276 (360)
Q Consensus 250 ~---~~~~-~~~~~~~~~v~~~~~~~~~~~~------------------------------------------------- 276 (360)
. ++.+ +.+.||.+.+..+.+.......
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 6 2233 7788888888776554321100
Q ss_pred ------ccccccceEEEcCCCCCCCHHHHHHHHhh----c-CCee-EEEcCCC-----CCCCCCeEEEEeCCHHHHHHHH
Q 018143 277 ------AAASQVKALYVKNIPDNTSTEKIKELFQR----H-GEVT-KVVMPPG-----KSGKRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 277 ------~~~~~~~~l~V~nlp~~~t~~~L~~~f~~----~-G~v~-~v~i~~~-----~~~~kg~afV~F~~~~~A~~A~ 339 (360)
....+.++|.|+|||..+++..|..++.. | +.+. -++.+.. ++.+.||+|+.|..++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 00111377999999999999999888754 2 2232 2232222 2334799999999999999999
Q ss_pred Hhh
Q 018143 340 KDT 342 (360)
Q Consensus 340 ~~l 342 (360)
..+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 965
No 20
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=6.3e-29 Score=229.46 Aligned_cols=246 Identities=21% Similarity=0.328 Sum_probs=203.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..+.|+|+|||..+..+.|..+|..||.|.++.+++. |. .|+|+|.++.+|.+|+..|....+...++.+.|+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 35689999999999999999999999999999966532 22 3999999999999999999887776666655443
Q ss_pred CCc--------------------------------------------------------cceecCCCCCCCCHHHHHHHH
Q 018143 184 ETK--------------------------------------------------------NRLFIGNVPKNWTEDEFRKVI 207 (360)
Q Consensus 184 ~~~--------------------------------------------------------~~l~v~nl~~~~~~~~l~~~f 207 (360)
+.. +.||+.||++..+.+.+...|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 210 249999999999999999999
Q ss_pred HhhCCceeEEEEeeCCC--CCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCCC--CCC-cccccccc
Q 018143 208 EDVGPGVETIELIKDPQ--NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--TPD-HSAAASQV 282 (360)
Q Consensus 208 ~~~g~~i~~~~~~~~~~--~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~~~~~~~~ 282 (360)
...|. |.++.|...+. ....+.|||||+|.+.++|..|++.|++. .+.|+.+.+.++.... ... ........
T Consensus 537 ~k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 537 SKQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HhcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEeccCcccccccccccccccc
Confidence 99998 88888865432 24467899999999999999999999754 7899999999888111 111 11122235
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
+.|+|+|||+..+-.+++++|..||.|..|+||...... +|||||.|-++..|.+|+.+|.++.+-||+|.+.|..
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 789999999999999999999999999999999873332 9999999999999999999999999999999988753
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=6e-28 Score=217.42 Aligned_cols=162 Identities=18% Similarity=0.381 Sum_probs=144.1
Q ss_pred CccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCee
Q 018143 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
..++|||+|||+.+++++|+++|+.||+ |..|+++++ ..+++++|||||+|.+.++|.+|+..|++. .+.++.+.+
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~-V~~v~i~~d-~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~--~l~gr~i~V 181 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGP-INTCRIMRD-YKTGYSFGYAFVDFGSEADSQRAIKNLNGI--TVRNKRLKV 181 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCccCcEEEEEEccHHHHHHHHHHcCCC--ccCCceeee
Confidence 4679999999999999999999999999 999999998 578899999999999999999999998754 678999999
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhh
Q 018143 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l 342 (360)
.|+.+.... ...++|||+|||..+|+++|+++|++||.|..|+|+.++.+. +|||||+|.++++|.+||..|
T Consensus 182 ~~a~p~~~~------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 182 SYARPGGES------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred ecccccccc------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 998764321 235689999999999999999999999999999998876433 899999999999999999999
Q ss_pred CCceeCC--eeEeEEe
Q 018143 343 EKYEIDG--KSHLHFP 356 (360)
Q Consensus 343 ng~~~~G--~~l~v~p 356 (360)
|+..+.| +.|.|+.
T Consensus 256 ng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRL 271 (346)
T ss_pred CCCccCCCceeEEEEE
Confidence 9999876 6777764
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=1.2e-27 Score=226.37 Aligned_cols=168 Identities=21% Similarity=0.441 Sum_probs=146.2
Q ss_pred ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeee
Q 018143 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.++|||+|||+.+++++|+++|.+||+ |..++++++ +.+++++|||||.|.+.++|.+|+..+++ ..+.|+.+.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG--~~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCC--eEEecceeeec
Confidence 468999999999999999999999998 999999998 57889999999999999999999999875 46789999988
Q ss_pred ecCCCCCCCc-----cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHH
Q 018143 266 WADPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKA 338 (360)
Q Consensus 266 ~~~~~~~~~~-----~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A 338 (360)
++........ .......++|||+|||..+++++|+++|+.||.|.+++|+.+..++ ||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 6543322111 1112245799999999999999999999999999999999886543 99999999999999999
Q ss_pred HHhhCCceeCCeeEeEEee
Q 018143 339 VKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 339 ~~~lng~~~~G~~l~v~p~ 357 (360)
+..|||..|+|+.|+|.+.
T Consensus 263 I~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred HHHhCCCeeCCeEEEEEec
Confidence 9999999999999999754
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=2.1e-28 Score=220.33 Aligned_cols=248 Identities=26% Similarity=0.412 Sum_probs=209.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..+|+|+-.|+..+++-+|..||+.+|+|..|+++.+..+++++|.|||+|.+.+....|+ .|+|..+.|.+|.|+.+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 46789999999999999999999999999999999999999999999999999999999999 69999999999999775
Q ss_pred CC--------------------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHH
Q 018143 184 ET--------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (360)
Q Consensus 184 ~~--------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a 243 (360)
.. -..|||+||++++++..|+.+|++||. |..+.+.++ ..+|+++||||++|.+...|
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHHH
Confidence 32 134899999999999999999999998 999999998 56999999999999999999
Q ss_pred HHHHHHHhccCcccCCCCCeeeecCCCCCCC-------------------------------------------------
Q 018143 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPD------------------------------------------------- 274 (360)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------------------------------------- 274 (360)
.+|+..||+ +.+.|+.+.|..........
T Consensus 334 r~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 334 RKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLL 411 (549)
T ss_pred HHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHh
Confidence 999999986 88899888764322111000
Q ss_pred -----------------ccccc-------cccceEEEcCC--CCCCCH--------HHHHHHHhhcCCeeEEEcCCCCCC
Q 018143 275 -----------------HSAAA-------SQVKALYVKNI--PDNTST--------EKIKELFQRHGEVTKVVMPPGKSG 320 (360)
Q Consensus 275 -----------------~~~~~-------~~~~~l~V~nl--p~~~t~--------~~L~~~f~~~G~v~~v~i~~~~~~ 320 (360)
...+. .++.|+.++|+ |...|+ +++.+.|++||+|..|.+.+...
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~- 490 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA- 490 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-
Confidence 00001 22456667775 333333 67888999999999999877664
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018143 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 321 ~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
|+.||.|.+.+.|..|+.+|||++|.||.|....+.+
T Consensus 491 --g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 491 --GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred --ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 8999999999999999999999999999999887754
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=4.5e-26 Score=210.00 Aligned_cols=163 Identities=23% Similarity=0.474 Sum_probs=147.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC--eEEEEee
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~ 182 (360)
..++|||+|||+.+++++|+.+|++||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..+.| ++|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45789999999999999999999999999999999998889999999999999999999999999999877 5677776
Q ss_pred cCCc----------------------------------------------------------------------------
Q 018143 183 SETK---------------------------------------------------------------------------- 186 (360)
Q Consensus 183 ~~~~---------------------------------------------------------------------------- 186 (360)
+...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 5311
Q ss_pred ----------------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHH
Q 018143 187 ----------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (360)
Q Consensus 187 ----------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (360)
.+|||+|||+.++++.|+++|++||. |..++++++ ..++.++|||||.|.+.++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~-v~~v~i~~d-~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGA-VQNVKIIRD-LTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCC-eEEEEEeEc-CCCCCccceEEEEECCHHHHH
Confidence 14999999999999999999999998 999999998 578999999999999999999
Q ss_pred HHHHHHhccCcccCCCCCeeeecCCCC
Q 018143 245 YSRQKMLNANFKLDGNTPTISWADPKS 271 (360)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~ 271 (360)
+|+..|++. .+.|+.|.|.|.....
T Consensus 326 ~Ai~~lnG~--~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 326 MAILSLNGY--TLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHhCCC--EECCeEEEEEEccCCC
Confidence 999999864 7799999999987653
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.7e-26 Score=188.97 Aligned_cols=159 Identities=30% Similarity=0.578 Sum_probs=148.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
..-+||+.|.+.++-+.|++.|.+||.|..++++++..|+++||||||.|.++++|..||..|||.-|++|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ----------------------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHH
Q 018143 186 ----------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (360)
Q Consensus 186 ----------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a 243 (360)
++++|++|++...+++.+++.|++||+ |..||+.++ +||+||.|.+.++|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhH
Confidence 268999999999999999999999999 999999987 78999999999999
Q ss_pred HHHHHHHhccCcccCCCCCeeeecCCCCCCC
Q 018143 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPD 274 (360)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 274 (360)
.+|+..+|+. .+.|..+++.|-.......
T Consensus 214 ahAIv~mNnt--ei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 214 AHAIVQMNNT--EIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HHHHHHhcCc--eeCceEEEEeccccCCCCC
Confidence 9999999876 7789999999987665443
No 26
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=8.7e-25 Score=191.15 Aligned_cols=144 Identities=26% Similarity=0.462 Sum_probs=127.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcc-CCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..+.+||.|||+++.+++|++||+. .|.|..|.++.+.. |+++|+|.|+|++++.+++|++.||.+.+.||+|.|..-
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4456999999999999999999965 78999999998875 999999999999999999999999999999999999653
Q ss_pred CCc-----------------------------------------------------------------------------
Q 018143 184 ETK----------------------------------------------------------------------------- 186 (360)
Q Consensus 184 ~~~----------------------------------------------------------------------------- 186 (360)
...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 210
Q ss_pred --------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhc
Q 018143 187 --------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (360)
Q Consensus 187 --------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~ 252 (360)
.++||.||.+.+....|.+.|.-.|. +..+.+..+ ..+.++|++.++|.++-.|-.|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 36889999999999999999999998 999988777 3458889999999999999999988764
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=5.7e-25 Score=209.54 Aligned_cols=169 Identities=18% Similarity=0.359 Sum_probs=144.3
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCe
Q 018143 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
...++|||+|||+.+++.+|+++|++||. |..++++.+ ..+++++|||||.|.+.++|.+|+. ++ +..+.|+.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~--g~~~~g~~i~ 161 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LT--GQMLLGRPII 161 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hC--CCEECCeeeE
Confidence 34678999999999999999999999997 999999998 6788999999999999999999986 44 4467888888
Q ss_pred eeecCCCCCCCc------cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHH
Q 018143 264 ISWADPKSTPDH------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSA 335 (360)
Q Consensus 264 v~~~~~~~~~~~------~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A 335 (360)
+.++........ .......++|||+|||..+|+++|+++|++||.|..|.|+.+..+ . +|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 877543321111 111123689999999999999999999999999999999887765 3 89999999999999
Q ss_pred HHHHHhhCCceeCCeeEeEEee
Q 018143 336 LKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 336 ~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+|+..|||..|.|+.|.|.+.
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEc
Confidence 9999999999999999999873
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=3.2e-24 Score=202.85 Aligned_cols=196 Identities=20% Similarity=0.349 Sum_probs=162.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEe-cCCCCCCcceEEEEEecCHHHHHHHHHHhcC--CccCCeEEE
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLM-KDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (360)
...++|||+|||+.+|+++|.++|+.++. +..+.+. ....+++++|||||+|.+.++|..|+..|+. ..+.|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35689999999999999999999999863 4444333 3334578899999999999999999988764 457899999
Q ss_pred EeecCCc-----------cceecCCCCCCCCHHHHHHHHHhh--CCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHH
Q 018143 180 CSLSETK-----------NRLFIGNVPKNWTEDEFRKVIEDV--GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (360)
Q Consensus 180 v~~~~~~-----------~~l~v~nl~~~~~~~~l~~~f~~~--g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a 246 (360)
|.|+.+. ++|||+|||+.+++++|+++|++| |. |..+.+++ +||||+|.+.++|.+|
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~-I~rV~~~r---------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK-VERVKKIR---------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc-eEEEEeec---------CeEEEEeCCHHHHHHH
Confidence 9998652 569999999999999999999999 98 98887754 4999999999999999
Q ss_pred HHHHhccCcccCCCCCeeeecCCCCCCCc----------------------cccccccceEEEcCCCCCCCHHHHHHHHh
Q 018143 247 RQKMLNANFKLDGNTPTISWADPKSTPDH----------------------SAAASQVKALYVKNIPDNTSTEKIKELFQ 304 (360)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~~~~l~V~nlp~~~t~~~L~~~f~ 304 (360)
+..+++. .+.++.+.|.|+.+...... ......+.++++.|+|+..++.-++.+|.
T Consensus 286 i~~lnG~--~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~ 363 (578)
T TIGR01648 286 MDELNGK--ELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPR 363 (578)
T ss_pred HHHhCCC--EECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccc
Confidence 9998765 77999999999987543200 01122468999999999999999999999
Q ss_pred hcCCeeE
Q 018143 305 RHGEVTK 311 (360)
Q Consensus 305 ~~G~v~~ 311 (360)
.+|.|..
T Consensus 364 ~~g~~~~ 370 (578)
T TIGR01648 364 MPGPIRG 370 (578)
T ss_pred cCccccC
Confidence 9997653
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=168.23 Aligned_cols=167 Identities=26% Similarity=0.411 Sum_probs=151.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
...||||+||+..++++-|.++|-+.|+|.++++++++.+...+||||++|.+.++|..|++-||...+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCccc
Q 018143 185 T-------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257 (360)
Q Consensus 185 ~-------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~ 257 (360)
. ..++||+||.+.+++..|...|+.||.-+..-.++++ ..++.++|++|+-|.+.+.+.+|+..+++. .+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~ngq--~l 164 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSMNGQ--YL 164 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHhccc--hh
Confidence 2 2579999999999999999999999986666677887 578999999999999999999999999865 67
Q ss_pred CCCCCeeeecCCCCCCC
Q 018143 258 DGNTPTISWADPKSTPD 274 (360)
Q Consensus 258 ~~~~~~v~~~~~~~~~~ 274 (360)
..+++.+.++.......
T Consensus 165 ~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDTKG 181 (203)
T ss_pred cCCceEEEEEEecCCCc
Confidence 88999999887665544
No 30
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=8.3e-24 Score=184.92 Aligned_cols=162 Identities=24% Similarity=0.476 Sum_probs=138.7
Q ss_pred cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCC--Cee
Q 018143 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT--PTI 264 (360)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~--~~v 264 (360)
-++||+-+|..|++.+|+++|++||. |..|.+++| +.++.++|+|||.|.++.+|.+|+.++++.. .+.|.. +.+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~k-tlpG~~~pvqv 111 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQK-TLPGMHHPVQV 111 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhccc-ccCCCCcceee
Confidence 47999999999999999999999998 999999999 7889999999999999999999999998653 444444 455
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhC
Q 018143 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~ln 343 (360)
.+++...... ...++|||+-|+..+|+.+++.+|++||.|..++|.++..+. ||||||+|.+.+.|..|++.||
T Consensus 112 k~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 112 KYADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred cccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhc
Confidence 5555443221 335789999999999999999999999999999999998877 9999999999999999999999
Q ss_pred Cc-eeCC--eeEeEEe
Q 018143 344 KY-EIDG--KSHLHFP 356 (360)
Q Consensus 344 g~-~~~G--~~l~v~p 356 (360)
|. .+.| .+|.|++
T Consensus 187 g~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKF 202 (510)
T ss_pred cceeeccCCCceEEEe
Confidence 85 4555 4556554
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.5e-23 Score=171.81 Aligned_cols=162 Identities=24% Similarity=0.444 Sum_probs=143.1
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCe
Q 018143 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
..+..|.|.-||..+|+++++.+|...|+ |++|+++|+ +.+|.+-||+||.|.++.+|.+|+..+| ++++..++|.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlN--GLrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLN--GLRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhc--ceeeccceEE
Confidence 34577899999999999999999999999 999999999 7899999999999999999999999997 5688999999
Q ss_pred eeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHh
Q 018143 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~ 341 (360)
|.++.|...... ...|||++||..+|..+|.++|++||.|.--+|..+.-+. ||.|||.|+....|..||..
T Consensus 115 VSyARPSs~~Ik------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSDSIK------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChhhhc------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 999998775433 3569999999999999999999999999877777666544 99999999999999999999
Q ss_pred hCCceeCCe--eEeEE
Q 018143 342 TEKYEIDGK--SHLHF 355 (360)
Q Consensus 342 lng~~~~G~--~l~v~ 355 (360)
|||..=-|. +|.|+
T Consensus 189 lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVK 204 (360)
T ss_pred ccCCCCCCCCCCeEEE
Confidence 999876553 34443
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=2.6e-23 Score=192.56 Aligned_cols=219 Identities=25% Similarity=0.360 Sum_probs=175.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
...+|||+|||+.+++++|+.+| |||.|..+..|.+|...++|..+.||-|+|.+..
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~ 282 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSK 282 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcc
Confidence 57789999999999999999998 8999999999999999999999999999986643
Q ss_pred Cc------------------------------------------------------------------------------
Q 018143 185 TK------------------------------------------------------------------------------ 186 (360)
Q Consensus 185 ~~------------------------------------------------------------------------------ 186 (360)
..
T Consensus 283 ~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~ 362 (725)
T KOG0110|consen 283 EKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQ 362 (725)
T ss_pred hhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhch
Confidence 21
Q ss_pred -----------------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHH
Q 018143 187 -----------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (360)
Q Consensus 187 -----------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a 243 (360)
+.++++|||.....+.|..+|..||. |..+.+++ ....++|.|.++.+|
T Consensus 363 e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp~-------~G~~aiv~fl~p~eA 434 (725)
T KOG0110|consen 363 EVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLPP-------GGTGAIVEFLNPLEA 434 (725)
T ss_pred hhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecCc-------ccceeeeeecCccch
Confidence 24789999999999999999999998 88884432 123489999999999
Q ss_pred HHHHHHHhccCcccCCCCCeeeecCCCCCC-------C----c---------------------cc------------cc
Q 018143 244 DYSRQKMLNANFKLDGNTPTISWADPKSTP-------D----H---------------------SA------------AA 279 (360)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~----~---------------------~~------------~~ 279 (360)
.+|++.+.... +...++++.|++...-. . . .. ..
T Consensus 435 r~Afrklaysr--~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~ 512 (725)
T KOG0110|consen 435 RKAFRKLAYSR--FKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDE 512 (725)
T ss_pred HHHHHHhchhh--hccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhcc
Confidence 99999986543 23334444443211110 0 0 00 00
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-----CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-----RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-----kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
...++|||+||++.+|.++|...|.+.|.|.++.|...+... .|||||+|.++++|++|++.|+|+.++|+.|.|
T Consensus 513 ~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 513 ETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred ccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 012349999999999999999999999999999988766442 699999999999999999999999999999998
Q ss_pred Ee
Q 018143 355 FP 356 (360)
Q Consensus 355 ~p 356 (360)
+-
T Consensus 593 k~ 594 (725)
T KOG0110|consen 593 KI 594 (725)
T ss_pred Ee
Confidence 74
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=9e-23 Score=197.15 Aligned_cols=163 Identities=20% Similarity=0.359 Sum_probs=140.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+++|+.||.|..+.++++..+|.++|||||+|.+.+.|..|+..|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CC----------------------------------ccceecCCCCCCC----------CHHHHHHHHHhhCCceeEEEE
Q 018143 184 ET----------------------------------KNRLFIGNVPKNW----------TEDEFRKVIEDVGPGVETIEL 219 (360)
Q Consensus 184 ~~----------------------------------~~~l~v~nl~~~~----------~~~~l~~~f~~~g~~i~~~~~ 219 (360)
.. ...|++.|+.... ..++|+++|.+||. |..|.|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~-v~~v~i 451 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP-LINIVI 451 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC-eeEEEe
Confidence 31 2346777775432 23578999999999 999999
Q ss_pred eeCC--CCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCC
Q 018143 220 IKDP--QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269 (360)
Q Consensus 220 ~~~~--~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~ 269 (360)
++.. ..++.+.|++||.|.+.++|.+|+..|++. .+.|+.+.+.|...
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr--~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR--KFNDRVVVAAFYGE 501 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEeCH
Confidence 8752 234567899999999999999999999876 56899888887654
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=3.2e-22 Score=155.78 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=143.3
Q ss_pred CccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCee
Q 018143 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
...+|||+||+..++++.|+++|-+.|+ |..+.++++ +-+...+||||++|.+.++|.-|++.|+ ..++.|++|++
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagp-Vv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikiln--~VkLYgrpIrv 83 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGP-VVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKILN--MVKLYGRPIRV 83 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCc-eeeeecchh-hhcccccceeEEEEechhhhHHHHHHHH--HHHhcCceeEE
Confidence 4578999999999999999999999999 999999999 6788899999999999999999999998 67999999999
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EcCCCCCCC--CCeEEEEeCCHHHHHHHHHh
Q 018143 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~~--kg~afV~F~~~~~A~~A~~~ 341 (360)
..+....... ..+..|||+||.+.+++..|.+.|+.||.+... .|.++..++ +|||||.|.+.+.+.+|+..
T Consensus 84 ~kas~~~~nl-----~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 84 NKASAHQKNL-----DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred Eecccccccc-----cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 9887333222 234689999999999999999999999988763 444555433 89999999999999999999
Q ss_pred hCCceeCCeeEeEEee
Q 018143 342 TEKYEIDGKSHLHFPV 357 (360)
Q Consensus 342 lng~~~~G~~l~v~p~ 357 (360)
+||..++.++++|--.
T Consensus 159 ~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYA 174 (203)
T ss_pred hccchhcCCceEEEEE
Confidence 9999999999988644
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=6.9e-22 Score=162.73 Aligned_cols=249 Identities=21% Similarity=0.359 Sum_probs=154.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc-cCC--eEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKG--KTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~-~~g--~~l~ 179 (360)
+.+.++|||+-|...-.+++++.+|..||.|.+|.+.+.+. |.+||+|||.|.+.-+|..||..|||.. +-| ..|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 33678899999999999999999999999999999999887 9999999999999999999999999854 444 6788
Q ss_pred EeecCCccc---------------------------------------eecCC----CCCCCCH----HHHHHHHHhhCC
Q 018143 180 CSLSETKNR---------------------------------------LFIGN----VPKNWTE----DEFRKVIEDVGP 212 (360)
Q Consensus 180 v~~~~~~~~---------------------------------------l~v~n----l~~~~~~----~~l~~~f~~~g~ 212 (360)
|.++...+. +.-.+ |...++. -++...++-.|-
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 888875410 00001 1111110 011111111111
Q ss_pred ---ceeEEEEeeCC------CCCCCC-----ccE-EEEEecCHHHHHHHHHHHhccCcccCCCCCee-------------
Q 018143 213 ---GVETIELIKDP------QNPSRN-----RGF-SFVLYYNNACADYSRQKMLNANFKLDGNTPTI------------- 264 (360)
Q Consensus 213 ---~i~~~~~~~~~------~~~~~~-----~g~-~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v------------- 264 (360)
.|....-...+ ...+.+ .|| +...+.+..-+..++-.. .-.........+
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~n--g~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYAN--GLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhc--CCccCCCCCccccchhhhhhhhHHH
Confidence 01000000000 000111 111 111222222222222110 000000000000
Q ss_pred --------------eecCCC-CCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEE
Q 018143 265 --------------SWADPK-STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFI 327 (360)
Q Consensus 265 --------------~~~~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV 327 (360)
.+..+. .-..........+.|||..||..+.+.+|.++|-.||.|++.++..++.++ |+||||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 000000 001112223457899999999999999999999999999988877776555 999999
Q ss_pred EeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 328 HYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 328 ~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.|+++.+|+.||..|||++|+-++|.|
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 999999999999999999999888775
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=9.3e-22 Score=163.95 Aligned_cols=148 Identities=30% Similarity=0.551 Sum_probs=135.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCCc
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
..|||+|||..+++.+|+.+|.+||+|..|-|+++ ||||...+...|..|+..||+..|+|..|.|..++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999966 8999999999999999999999999999999887755
Q ss_pred ----cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCC
Q 018143 187 ----NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (360)
Q Consensus 187 ----~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~ 262 (360)
.+|+|+|+.+.++.++|+..|++||+ +..|.|+++ |+||+|...++|..|++.|++. .+.|+++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygp-viecdivkd---------y~fvh~d~~eda~~air~l~~~--~~~gk~m 142 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGP-VIECDIVKD---------YAFVHFDRAEDAVEAIRGLDNT--EFQGKRM 142 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCC-ceeeeeecc---------eeEEEEeeccchHHHHhccccc--cccccee
Confidence 67999999999999999999999999 999999887 9999999999999999999876 6789999
Q ss_pred eeeecCCCCCCC
Q 018143 263 TISWADPKSTPD 274 (360)
Q Consensus 263 ~v~~~~~~~~~~ 274 (360)
.|+.+.......
T Consensus 143 ~vq~stsrlrta 154 (346)
T KOG0109|consen 143 HVQLSTSRLRTA 154 (346)
T ss_pred eeeeeccccccC
Confidence 998877665443
No 37
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=6.3e-21 Score=167.80 Aligned_cols=157 Identities=23% Similarity=0.391 Sum_probs=135.1
Q ss_pred ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeee
Q 018143 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.+.|||+.||..+.+++|.-+|++.|+ |-.+|++++ +.+|.++|||||.|.+.+.|+.|++.||+..++ .|+.|.|.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRLMmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc 159 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGK-IYELRLMMD-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVC 159 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccc-eeeEEEeec-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEE
Confidence 468999999999999999999999999 999999999 688999999999999999999999999987654 67777777
Q ss_pred ecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCC---CCCCCCeEEEEeCCHHHHHHHHHh
Q 018143 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPG---KSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~---~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
.+. ..++|||+|||.+.+.++|.+.+++.+ .|..|.++.. +..+||||||+|.++..|..|-+.
T Consensus 160 ~Sv------------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 160 VSV------------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred Eee------------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 553 356899999999999999999999987 4666666543 333499999999999999999988
Q ss_pred hCC--ceeCCeeEeEEee
Q 018143 342 TEK--YEIDGKSHLHFPV 357 (360)
Q Consensus 342 lng--~~~~G~~l~v~p~ 357 (360)
|-. .++.|+.+.|-|.
T Consensus 228 l~~g~~klwgn~~tVdWA 245 (506)
T KOG0117|consen 228 LMPGKIKLWGNAITVDWA 245 (506)
T ss_pred ccCCceeecCCcceeecc
Confidence 763 4667888888763
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=9.8e-22 Score=163.81 Aligned_cols=143 Identities=25% Similarity=0.479 Sum_probs=132.5
Q ss_pred cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeee
Q 018143 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
..|||+|||...+..+|+.+|++||+ |..|.|++. ||||+..+...+..|++.|+ .+.++|..|.|..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk-VlECDIvKN---------YgFVHiEdktaaedairNLh--gYtLhg~nInVea 70 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK-VLECDIVKN---------YGFVHIEDKTAAEDAIRNLH--GYTLHGVNINVEA 70 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc-eEeeeeecc---------cceEEeecccccHHHHhhcc--cceecceEEEEEe
Confidence 36899999999999999999999999 999999876 99999999999999999886 5688999999988
Q ss_pred cCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce
Q 018143 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
+..+. ..+++|+|+||.+.++..+|+..|.+||+|..+.|.+ +|+||.|.-.++|..|++.|+|+.
T Consensus 71 SksKs--------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 71 SKSKS--------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred ccccC--------CCccccccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEeeccchHHHHhcccccc
Confidence 77763 4578999999999999999999999999999999986 699999999999999999999999
Q ss_pred eCCeeEeEE
Q 018143 347 IDGKSHLHF 355 (360)
Q Consensus 347 ~~G~~l~v~ 355 (360)
|.|++++|.
T Consensus 137 ~~gk~m~vq 145 (346)
T KOG0109|consen 137 FQGKRMHVQ 145 (346)
T ss_pred cccceeeee
Confidence 999999974
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.86 E-value=3.4e-20 Score=150.50 Aligned_cols=205 Identities=17% Similarity=0.317 Sum_probs=148.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHH----hhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 105 NGSEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~----~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
+..||||.||+..+..++|+. +|++||.|..|...+. .+.+|.|||.|.+.+.|..|+..|+|..+.|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999988 9999999999988764 688999999999999999999999999999999999
Q ss_pred eecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCC
Q 018143 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260 (360)
Q Consensus 181 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~ 260 (360)
+||..++.++.+--+..+.. ++.....++.+.+ ... ..++........
T Consensus 85 qyA~s~sdii~~~~~~~v~~----------~~k~~~~~~~~~~-~~~---------------------~~ng~~~~~~~~ 132 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEK----------EKKINGEILARIK-QPL---------------------DTNGHFYNMNRM 132 (221)
T ss_pred ecccCccchhhccCceeccc----------cCccccccccccC-Ccc---------------------cccccccccccc
Confidence 99998776654422111110 1101111111110 000 001100000000
Q ss_pred CCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHH
Q 018143 261 TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 261 ~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (360)
.+ ..+. . .....+..+||+.|||..++.+.|..+|..|+....|+++.... +.|||+|.+...|..|..
T Consensus 133 ~~----p~p~---~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~---~iAfve~~~d~~a~~a~~ 201 (221)
T KOG4206|consen 133 NL----PPPF---L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS---GIAFVEFLSDRQASAAQQ 201 (221)
T ss_pred cC----CCCc---c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC---ceeEEecchhhhhHHHhh
Confidence 00 0000 1 22346678999999999999999999999999999999988664 899999999999999999
Q ss_pred hhCCceeC-CeeEeEE
Q 018143 341 DTEKYEID-GKSHLHF 355 (360)
Q Consensus 341 ~lng~~~~-G~~l~v~ 355 (360)
.|+|..+. ...+.+.
T Consensus 202 ~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 202 ALQGFKITKKNTMQIT 217 (221)
T ss_pred hhccceeccCceEEec
Confidence 99998886 6666654
No 40
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.83 E-value=1.2e-19 Score=158.08 Aligned_cols=238 Identities=22% Similarity=0.241 Sum_probs=182.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCC--ccCCeEEEEe
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~--~~~g~~l~v~ 181 (360)
.+++.|.+||||+++++.+|..++.+||.|..+.+.+.+ + .||++|.+...|...+..+... .+.|+.|-|+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk----n--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK----N--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc----h--hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 368899999999999999999999999999999988743 3 6999999999998855443332 2567777776
Q ss_pred ecCCc----------------------------------------------cceecCCCCCCCCHHHHHHHHHhhCCcee
Q 018143 182 LSETK----------------------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215 (360)
Q Consensus 182 ~~~~~----------------------------------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~ 215 (360)
++... -+++|.|+-+.++-+-|.++|++||. |.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eE
Confidence 64211 14678999999999999999999998 66
Q ss_pred EEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCC------------------CCCC---
Q 018143 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------------------STPD--- 274 (360)
Q Consensus 216 ~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~------------------~~~~--- 274 (360)
++..... ...-.|.|+|.....|..|...|.+.++.-+.-++++.++.-. ....
T Consensus 179 KIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 179 KIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred EEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 6654432 1233489999999999999999887766544434433332100 0000
Q ss_pred ----------------------------------cccccc--ccceEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEcCCC
Q 018143 275 ----------------------------------HSAAAS--QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPG 317 (360)
Q Consensus 275 ----------------------------------~~~~~~--~~~~l~V~nlp-~~~t~~~L~~~f~~~G~v~~v~i~~~ 317 (360)
...... .+..|.|.||. ..+|.+-|..+|+-||.|.+|.|...
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 000000 13678888886 88999999999999999999999887
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 318 ~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+. .-|.|.|.+..+|+.|+..|+|..|.|++|+|.+
T Consensus 334 kk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 334 KK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred CC---cceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 74 5799999999999999999999999999999865
No 41
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3.2e-20 Score=159.27 Aligned_cols=167 Identities=22% Similarity=0.447 Sum_probs=147.5
Q ss_pred cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeee
Q 018143 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
+++||+.+.+...++.||..|.+||+ |.++.+.++ ..+++.+||+||+|.-++.|..|+..+|+. -++||.+.|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 67999999999999999999999999 999999999 689999999999999999999999999865 67999999886
Q ss_pred cCCCCCCCcc-----ccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHH
Q 018143 267 ADPKSTPDHS-----AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAV 339 (360)
Q Consensus 267 ~~~~~~~~~~-----~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~ 339 (360)
........+. .....-++|||..+..++++++|+..|.-||.|.++.+.+...++ ||||||+|.+..+...|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 5544433321 122345899999999999999999999999999999999888766 999999999999999999
Q ss_pred HhhCCceeCCeeEeEEee
Q 018143 340 KDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 340 ~~lng~~~~G~~l~v~p~ 357 (360)
..||-+.++|.-|+|-.+
T Consensus 270 asMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hhcchhhcccceEecccc
Confidence 999999999999998543
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=4.4e-20 Score=161.47 Aligned_cols=233 Identities=23% Similarity=0.423 Sum_probs=179.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+.++|||++|+|.++++.|+.+|.+||.|..|.+++++.+++++||+||.|.+.....+++. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999999999995 57788999999988876
Q ss_pred Cc------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhc
Q 018143 185 TK------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (360)
Q Consensus 185 ~~------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~ 252 (360)
++ ..+||+.||..+++..++..|.++|. |..+.++.+ ..+.+.+||+||.|.+.+.+.+++..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~-v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~--- 158 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGK-VADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ--- 158 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccce-eEeeEEeec-ccccccccceeeEeccccccceeccc---
Confidence 54 37999999999999999999999996 999999998 78899999999999999999977654
Q ss_pred cCcccCCCCCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEc-------CCCCCCCCCeE
Q 018143 253 ANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM-------PPGKSGKRDFG 325 (360)
Q Consensus 253 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i-------~~~~~~~kg~a 325 (360)
..+.+.++.+.|..|.|......... .........|++...+--.|..+|..||.+..... .-......+.+
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~~~~~-~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~g 237 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQSTKS-SVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFNGGSG 237 (311)
T ss_pred ceeeecCceeeEeeccchhhcccccc-ccccccccccccccccccccchhccccCccccccccccccccccccccCCCcc
Confidence 56789999999999988865443322 11112222244444444445555666655431100 00011125788
Q ss_pred EEEeCCHHHHHHHHHhhCC
Q 018143 326 FIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 326 fV~F~~~~~A~~A~~~lng 344 (360)
|..|.+.....-+-..+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~ 256 (311)
T KOG4205|consen 238 YPEFGNSGLGFGYGNKLNR 256 (311)
T ss_pred ccccCccccccccccccCC
Confidence 9999877666655554443
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.81 E-value=1e-18 Score=156.15 Aligned_cols=241 Identities=17% Similarity=0.251 Sum_probs=176.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.......|.+++|||.+|+++|.+||+.++ |.++.+.+. +|+..|-|||+|.+.+++.+|++ .+-..+..|.|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 344567899999999999999999999996 666555544 59999999999999999999996 57788888999987
Q ss_pred ecCC-----------------ccceecCCCCCCCCHHHHHHHHHhhCCcee-EEEEeeCCCCCCCCccEEEEEecCHHHH
Q 018143 182 LSET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACA 243 (360)
Q Consensus 182 ~~~~-----------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~-~~~~~~~~~~~~~~~g~~~v~f~~~~~a 243 (360)
.+.. ...|.++.||+.|++++|.++|+..-- +. .+.++.+ ..+++.|-|||+|.+.+.|
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I-v~~gi~l~~d--~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI-VPDGILLPMD--QRGRPTGEAFVQFESQESA 158 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc-cccceeeecc--CCCCcccceEEEecCHHHH
Confidence 6632 246889999999999999999997653 22 2444454 4567899999999999999
Q ss_pred HHHHHHHhccCcccCCCCCeeeec-----------------------C------------CCC-----------------
Q 018143 244 DYSRQKMLNANFKLDGNTPTISWA-----------------------D------------PKS----------------- 271 (360)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~-----------------------~------------~~~----------------- 271 (360)
++|+..-.. .++.+.|.|-.+ . ...
T Consensus 159 e~Al~rhre---~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g 235 (510)
T KOG4211|consen 159 EIALGRHRE---NIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYG 235 (510)
T ss_pred HHHHHHHHH---hhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccc
Confidence 999865321 122222211000 0 000
Q ss_pred ------------------------CC---Cc-------cccccc-cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCC
Q 018143 272 ------------------------TP---DH-------SAAASQ-VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP 316 (360)
Q Consensus 272 ------------------------~~---~~-------~~~~~~-~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~ 316 (360)
.. .+ .....+ ...+..++||+..+..+|..+|+..-++ .|+|..
T Consensus 236 ~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~i 314 (510)
T KOG4211|consen 236 FSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEI 314 (510)
T ss_pred cccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEe
Confidence 00 00 000000 2568889999999999999999985544 788887
Q ss_pred CCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 317 GKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 317 ~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
...++ .|-|+|+|.|+++|..|+.. ++..+..+-|-.
T Consensus 315 g~dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVEl 352 (510)
T KOG4211|consen 315 GPDGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVEL 352 (510)
T ss_pred CCCCccCCcceeecccchhhHhhhcc-CCcccCcceeee
Confidence 87777 89999999999999999985 666666555544
No 44
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=6.7e-19 Score=161.35 Aligned_cols=242 Identities=20% Similarity=0.408 Sum_probs=189.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC-----------C-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----------G-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~-----------G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
..+.++|+++|+.++++.+..+|..- | .+..+.+. ..+.|||++|.+...|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhh-cccchh
Confidence 55689999999999999999988653 3 46666664 44679999999999999999 578888
Q ss_pred cCCeEEEEeecC-----------------------------CccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC
Q 018143 173 LKGKTIRCSLSE-----------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223 (360)
Q Consensus 173 ~~g~~l~v~~~~-----------------------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~ 223 (360)
+.|+.+++.... ....+++++||...++.+++++...+|. +....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d- 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKD- 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeecc-
Confidence 888877764321 1257999999999999999999999998 999999998
Q ss_pred CCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCc------------------cccccccceE
Q 018143 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH------------------SAAASQVKAL 285 (360)
Q Consensus 224 ~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------~~~~~~~~~l 285 (360)
..++.++||+|..|.++.....|+..+++. .+++..+.++.+.+...... .....++.+|
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm--~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGM--QLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchh--hhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 567899999999999999999999998754 66777777776654432221 2222344566
Q ss_pred EEcCCC--CCCCH--------HHHHHHHhhcCCeeEEEcCCC-CCCC----CCeEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018143 286 YVKNIP--DNTST--------EKIKELFQRHGEVTKVVMPPG-KSGK----RDFGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 286 ~V~nlp--~~~t~--------~~L~~~f~~~G~v~~v~i~~~-~~~~----kg~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
.+.|+= ..+.+ ++++..|++||.|..|.|+.. .... -|..||+|.+.+++++|..+|+|++|.||
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 666631 11111 466778899999999999887 3222 56779999999999999999999999999
Q ss_pred eEeEEee
Q 018143 351 SHLHFPV 357 (360)
Q Consensus 351 ~l~v~p~ 357 (360)
.|....+
T Consensus 483 tVvtsYy 489 (500)
T KOG0120|consen 483 TVVASYY 489 (500)
T ss_pred EEEEEec
Confidence 9987654
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=3.3e-19 Score=155.96 Aligned_cols=167 Identities=25% Similarity=0.423 Sum_probs=149.1
Q ss_pred CccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCee
Q 018143 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
...++||++|+|..+++.|+..|.+||. |..|.++++ +.+++++||+||.|.+......++.. ..+.+.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Ge-v~d~~vm~d-~~t~rsrgFgfv~f~~~~~v~~vl~~---~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGE-VTDCVVMRD-PSTGRSRGFGFVTFATPEGVDAVLNA---RTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCc-eeeEEEecc-CCCCCcccccceecCCCcchheeecc---cccccCCccccc
Confidence 4578999999999999999999999999 999999999 56799999999999999988866654 577899999999
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhh
Q 018143 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l 342 (360)
..+.+.............++|||++||..+++++|+++|.+||.|..+.++.+.... +|||||.|.+.+++.+++. .
T Consensus 80 k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 80 KRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred eeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 999888877766665678899999999999999999999999999988888777655 9999999999999999888 5
Q ss_pred CCceeCCeeEeEEee
Q 018143 343 EKYEIDGKSHLHFPV 357 (360)
Q Consensus 343 ng~~~~G~~l~v~p~ 357 (360)
.-+.|+|+.+.|+..
T Consensus 159 ~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeeecCceeeEeec
Confidence 888999999998754
No 46
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.76 E-value=6e-17 Score=138.62 Aligned_cols=197 Identities=21% Similarity=0.359 Sum_probs=141.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccC
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
+.-++.|||+|||.++|.+++..+|++||.|. .|+|.++.. |+.+|=|.+.|--.+++..|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44567799999999999999999999999774 477888877 999999999999999999999999999999
Q ss_pred CeEEEEeecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccC
Q 018143 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254 (360)
Q Consensus 175 g~~l~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~ 254 (360)
|+.|+|..|+ |+..|..- .+++.++-+ .-.+-+..+....
T Consensus 210 g~~~rVerAk----------------------fq~Kge~~----------~~~k~k~k~--------~~~kk~~k~q~k~ 249 (382)
T KOG1548|consen 210 GKKLRVERAK----------------------FQMKGEYD----------ASKKEKGKC--------KDKKKLKKQQQKL 249 (382)
T ss_pred CcEEEEehhh----------------------hhhccCcC----------ccccccccc--------ccHHHHHHHHHhh
Confidence 9999999986 33333200 001100000 0011111122111
Q ss_pred cccCCCCCeeeecCCCCCCCccccccccceEEEcCCC----CCCC-------HHHHHHHHhhcCCeeEEEcCCCCCCCCC
Q 018143 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP----DNTS-------TEKIKELFQRHGEVTKVVMPPGKSGKRD 323 (360)
Q Consensus 255 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp----~~~t-------~~~L~~~f~~~G~v~~v~i~~~~~~~kg 323 (360)
+. |.... .........++|.++|+= ...+ .++|++-+.+||.|.+|.+....+. |
T Consensus 250 ~d---------w~pd~---~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPd--G 315 (382)
T KOG1548|consen 250 LD---------WRPDR---DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPD--G 315 (382)
T ss_pred cc---------cCCCc---cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCC--c
Confidence 11 11111 111122456789999973 2223 2577788999999999998755443 8
Q ss_pred eEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 324 FGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 324 ~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.+-|.|.+...|..||+.|+|+.|+||+|..
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A 346 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQLTA 346 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceEEEE
Confidence 9999999999999999999999999999975
No 47
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=2.1e-18 Score=156.06 Aligned_cols=166 Identities=19% Similarity=0.407 Sum_probs=137.5
Q ss_pred cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeee
Q 018143 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
+++|+.-++...+.-+|.++|+.+|+ |..++++.+ +.+++++|.+||.|.+..+...|+. |+ +..+.|.++.++.
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~aia-Ls--Gqrllg~pv~vq~ 254 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAIA-LS--GQRLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHhh-hc--CCcccCceeEecc
Confidence 67888888888899999999999999 999999999 8999999999999999999988884 34 3466777777765
Q ss_pred cCCCCCC--------CccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC-CCC-CCeEEEEeCCHHHHH
Q 018143 267 ADPKSTP--------DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSAL 336 (360)
Q Consensus 267 ~~~~~~~--------~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-kg~afV~F~~~~~A~ 336 (360)
....... .......+...|+|+||-+++++.+|+.+|..||.|..|.++.+. .|. +|||||+|.+.++|.
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 4322111 111112223349999999999999999999999999999999986 344 999999999999999
Q ss_pred HHHHhhCCceeCCeeEeEEee
Q 018143 337 KAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 337 ~A~~~lng~~~~G~~l~v~p~ 357 (360)
+|+..|||+.+.|+.|+|--+
T Consensus 335 ~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred HHHHHhccceecCceEEEEEe
Confidence 999999999999999997544
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=8.2e-18 Score=133.01 Aligned_cols=83 Identities=36% Similarity=0.677 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..+++|||+|||+.+|+++|+++|.+||.|.++.++.++.|++++|||||+|.+.++|..|+..||+..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.1e-16 Score=125.23 Aligned_cols=146 Identities=23% Similarity=0.433 Sum_probs=127.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||.++.+.+|.++|.+||.|..|.+... ....+||||+|.++-+|..|+..-+|..++|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 46789999999999999999999999999999988543 244679999999999999999999999999999999987
Q ss_pred CCc--------------------------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcc
Q 018143 184 ETK--------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231 (360)
Q Consensus 184 ~~~--------------------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g 231 (360)
... ..+.|+.||.+.++++|+......|. +....+.++ |
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGd-vCfadv~rD--------g 151 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGD-VCFADVQRD--------G 151 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCC-eeeeeeecc--------c
Confidence 431 36899999999999999999999998 888888776 4
Q ss_pred EEEEEecCHHHHHHHHHHHhccCcccCCCC
Q 018143 232 FSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (360)
Q Consensus 232 ~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (360)
++.|.|.+.+++.-|+..|....+.-.|-.
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~~seGe~ 181 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKFRSEGET 181 (241)
T ss_pred ceeeeeeehhhHHHHHHhhccccccCcCcE
Confidence 899999999999999999876655444443
No 50
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.73 E-value=7.5e-17 Score=139.53 Aligned_cols=251 Identities=17% Similarity=0.219 Sum_probs=185.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..+...|..++|||..+..+|..+|+-.....-.+.+-...-|+..|.|.|.|.+.+.-.-|++. +.+-+.++.+.|..
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 44678899999999999999999998653222222222222378889999999999999999975 77778889888876
Q ss_pred cCCc----------------------cceecCCCCCCCCHHHHHHHHHh---hCCceeEEEEeeCCCCCCCCccEEEEEe
Q 018143 183 SETK----------------------NRLFIGNVPKNWTEDEFRKVIED---VGPGVETIELIKDPQNPSRNRGFSFVLY 237 (360)
Q Consensus 183 ~~~~----------------------~~l~v~nl~~~~~~~~l~~~f~~---~g~~i~~~~~~~~~~~~~~~~g~~~v~f 237 (360)
+... --+.+++||+.++..++..+|.+ .+.....+-+++. ..|+..|-|||.|
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDAFVLF 213 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccceEEEe
Confidence 5432 13667899999999999999963 3323667777764 5789999999999
Q ss_pred cCHHHHHHHHHHHhccCcccCCCCCee----------------------eecCCCC---CCCccccccccceEEEcCCCC
Q 018143 238 YNNACADYSRQKMLNANFKLDGNTPTI----------------------SWADPKS---TPDHSAAASQVKALYVKNIPD 292 (360)
Q Consensus 238 ~~~~~a~~a~~~~~~~~~~~~~~~~~v----------------------~~~~~~~---~~~~~~~~~~~~~l~V~nlp~ 292 (360)
.....|..|+..-.. .++.|.+.+ ....+.. ............+|.+++||+
T Consensus 214 a~ee~aq~aL~khrq---~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy 290 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQ---NIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPY 290 (508)
T ss_pred cCHHHHHHHHHHHHH---HHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCCh
Confidence 999999998865221 112222110 0000000 111111223367999999999
Q ss_pred CCCHHHHHHHHhhcCC-eeE--EEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018143 293 NTSTEKIKELFQRHGE-VTK--VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 293 ~~t~~~L~~~f~~~G~-v~~--v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
..+-++|..+|..|.. |.. |++..+..|+ .|-|||+|.+.+.|.+|....++....+|-|.|+|+.|
T Consensus 291 ~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 291 EATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred hhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 9999999999999873 443 8888777777 89999999999999999999999888999999999875
No 51
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=1.5e-15 Score=132.62 Aligned_cols=234 Identities=18% Similarity=0.218 Sum_probs=180.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceE-EEEEecCHHHHHHHHHHhcCCccC--CeEEEEee
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELK--GKTIRCSL 182 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-a~v~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~ 182 (360)
--+++|.|+-+.+|-+-|..+|++||.|..|.-... +.|| |.|+|.+...|..|...|+|..|- ...|+|.+
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 347899999999999999999999999977755432 2333 899999999999999999998763 35777766
Q ss_pred cCC---------------------------------------------------------------------ccceecCC
Q 018143 183 SET---------------------------------------------------------------------KNRLFIGN 193 (360)
Q Consensus 183 ~~~---------------------------------------------------------------------~~~l~v~n 193 (360)
++- ...|.|.|
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 421 02355666
Q ss_pred C-CCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCCCC
Q 018143 194 V-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272 (360)
Q Consensus 194 l-~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~ 272 (360)
| +..+|.+.|..+|.-||. |..++|.... +-.|.|+|.+...|..|+..|.+. .+.|+.+++.++.-..-
T Consensus 305 ln~~~VT~d~LftlFgvYGd-VqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~--~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFGVYGD-VQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGH--KLYGKKLRVTLSKHTNV 375 (492)
T ss_pred CchhccchhHHHHHHhhhcc-eEEEEeeecC------CcceeeeecchhHHHHHHHHhhcc--eecCceEEEeeccCccc
Confidence 6 445899999999999999 9999998862 357999999999999999999754 77888888877543221
Q ss_pred CCc-----------------------------cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCC
Q 018143 273 PDH-----------------------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD 323 (360)
Q Consensus 273 ~~~-----------------------------~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg 323 (360)
..+ ....+++.+|.+.|+|.++++++|+.+|..-|..........+. +.
T Consensus 376 qlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd--~k 453 (492)
T KOG1190|consen 376 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD--RK 453 (492)
T ss_pred cCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC--cc
Confidence 100 00123467999999999999999999999988765443222221 36
Q ss_pred eEEEEeCCHHHHHHHHHhhCCceeCCe-eEeEE
Q 018143 324 FGFIHYAERSSALKAVKDTEKYEIDGK-SHLHF 355 (360)
Q Consensus 324 ~afV~F~~~~~A~~A~~~lng~~~~G~-~l~v~ 355 (360)
+|++.+.+.+.|..|+-.++++.+++. .|+|-
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 999999999999999999999988755 66653
No 52
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.71 E-value=4.5e-16 Score=125.39 Aligned_cols=233 Identities=15% Similarity=0.184 Sum_probs=133.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCC-CcceEEEEEecCHHHHHHHHHHhcCCccC---CeEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG-ESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~-~~~g~a~v~f~~~~~a~~a~~~l~~~~~~---g~~l 178 (360)
+..-+||||.+||.++...+|..||+.|-.-..+.+......+ -.+.+||+.|.+...|..|+..|||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457899999999999999999999998766666554433222 24579999999999999999999999885 7899
Q ss_pred EEeecCCccceecCCCCCCCC-HHHHHHHHHhhCCcee-EEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcc
Q 018143 179 RCSLSETKNRLFIGNVPKNWT-EDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256 (360)
Q Consensus 179 ~v~~~~~~~~l~v~nl~~~~~-~~~l~~~f~~~g~~i~-~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~ 256 (360)
++..++.+.+.--......-. ...+-.. .++..+. ......+ .+....+ .......| .|+... ....
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~--~~~~~qr~sa~~qhd---~~l~~p~---~l~~~~~a-~al~~~--~~t~ 179 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVID--NRNKEQRKSADDQHD---EGLSDPD---ELQEPGNA-DALKEN--DTTK 179 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCcccccc--ccChhhcccchhhcc---ccccCcc---ccCCcccc-ccCCCc--cccc
Confidence 999998654432221111000 0000000 0000000 0000000 0000000 00000000 000000 0000
Q ss_pred cCCCCCeeeecCCCC-----CCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCC
Q 018143 257 LDGNTPTISWADPKS-----TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE 331 (360)
Q Consensus 257 ~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~ 331 (360)
-....-..+|+.+.. ...-........||||-||..++|+++|+++|+.|.....++|....+ ...||+.|.+
T Consensus 180 ~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g--~~vaf~~~~~ 257 (284)
T KOG1457|consen 180 SEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG--MPVAFADFEE 257 (284)
T ss_pred hhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC--cceEeecHHH
Confidence 000000001111110 000011223457899999999999999999999998888777754432 3789999999
Q ss_pred HHHHHHHHHhhCCceeC
Q 018143 332 RSSALKAVKDTEKYEID 348 (360)
Q Consensus 332 ~~~A~~A~~~lng~~~~ 348 (360)
.+.|..|+..|+|..+-
T Consensus 258 ~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 258 IEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHHHHhhcceec
Confidence 99999999999998773
No 53
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.69 E-value=2.9e-15 Score=129.42 Aligned_cols=239 Identities=19% Similarity=0.193 Sum_probs=188.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHh--cCCccCCeEEE
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL--HSKELKGKTIR 179 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l--~~~~~~g~~l~ 179 (360)
.+..+-.|.|++|-..+++.+|.+.++.||+|..+.++.. +..|.|+|.+.+.|..|+... +...+.|+.--
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhh
Confidence 4556789999999999999999999999999999988654 447999999999999998532 34556776665
Q ss_pred EeecCC-------------ccc--eecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHH
Q 018143 180 CSLSET-------------KNR--LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (360)
Q Consensus 180 v~~~~~-------------~~~--l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (360)
+.++.+ ++. +.|-|--+.+|-+-|..+..+.|+ |..+.|++. ..-.|+|+|.+.+.|.
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVAQ 173 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHHH
Confidence 555422 122 345666778999999999999998 888888774 2346999999999999
Q ss_pred HHHHHHhccCcccCCCCCeeeecCCCCCC---------------------------------------------------
Q 018143 245 YSRQKMLNANFKLDGNTPTISWADPKSTP--------------------------------------------------- 273 (360)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------------------------------------- 273 (360)
+|...||+..+.-+--++.+.++.|....
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 99999998766555555555555443200
Q ss_pred -------------------------CccccccccceEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEE
Q 018143 274 -------------------------DHSAAASQVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFI 327 (360)
Q Consensus 274 -------------------------~~~~~~~~~~~l~V~nlp-~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV 327 (360)
..+....+...++|.+|. ..++-+.|+.+|..||.|.+|.+++.+. |-|+|
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamV 330 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMV 330 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEE
Confidence 000111235789999999 5667789999999999999999998876 78999
Q ss_pred EeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 328 HYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 328 ~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
++.+....++|+..||+..+.|.+|.|.+
T Consensus 331 emgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 331 EMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred EcCcHHHHHHHHHHhccCccccceEEEee
Confidence 99999999999999999999999999875
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=3.2e-16 Score=123.91 Aligned_cols=78 Identities=18% Similarity=0.409 Sum_probs=71.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..+++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|+|+.|.|.+.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 446789999999999999999999999999999998876543 899999999999999999999999999999999864
No 55
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.67 E-value=2.1e-14 Score=124.19 Aligned_cols=231 Identities=18% Similarity=0.267 Sum_probs=179.5
Q ss_pred CCEEEEc--CCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc--CCeEEEEe
Q 018143 106 GSEVFIG--GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--KGKTIRCS 181 (360)
Q Consensus 106 ~~~i~v~--nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~--~g~~l~v~ 181 (360)
...|.+. |--+.+|.+-|..+..+.|+|.+|.|.+. +--.|.|+|.+.+.|++|...|||..| +..+|+|.
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 3344444 44456999999999999999999998864 233699999999999999999999876 45788998
Q ss_pred ecCCc---------------------------------------------------------------------------
Q 018143 182 LSETK--------------------------------------------------------------------------- 186 (360)
Q Consensus 182 ~~~~~--------------------------------------------------------------------------- 186 (360)
+|++.
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 88763
Q ss_pred -------------cceecCCCCC-CCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhc
Q 018143 187 -------------NRLFIGNVPK-NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (360)
Q Consensus 187 -------------~~l~v~nl~~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~ 252 (360)
..+.|.+|.. .++-+.|..+|-.||. |..+++++. ..|.|+|++.+....++|+..|++
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN-V~rvkFmkT------k~gtamVemgd~~aver~v~hLnn 347 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN-VERVKFMKT------KPGTAMVEMGDAYAVERAVTHLNN 347 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCc-eeeEEEeec------ccceeEEEcCcHHHHHHHHHHhcc
Confidence 1234444533 3678899999999999 999999986 356899999999999999999986
Q ss_pred cCcccCCCCCeeeecCCCCCC-------------------------------CccccccccceEEEcCCCCCCCHHHHHH
Q 018143 253 ANFKLDGNTPTISWADPKSTP-------------------------------DHSAAASQVKALYVKNIPDNTSTEKIKE 301 (360)
Q Consensus 253 ~~~~~~~~~~~v~~~~~~~~~-------------------------------~~~~~~~~~~~l~V~nlp~~~t~~~L~~ 301 (360)
.. +.|.++.+..+....-. .......++++|..-|.|..+|++.|..
T Consensus 348 ~~--lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~ 425 (494)
T KOG1456|consen 348 IP--LFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIG 425 (494)
T ss_pred Cc--cccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHH
Confidence 54 46666665444322110 0112233578999999999999999999
Q ss_pred HHhhcCC-eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018143 302 LFQRHGE-VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 302 ~f~~~G~-v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
+|...+. ..+|++...+..+...|.++|++..+|..||..||++.+.|.
T Consensus 426 i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 426 ICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred HhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCC
Confidence 9998763 467888777765566789999999999999999999998754
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=3.6e-16 Score=108.66 Aligned_cols=70 Identities=44% Similarity=0.872 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 109 i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
|||+|||+++|+++|+.+|++||.|..+.+..+ .+++++|+|||+|.+.++|.+|+..|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 5689999999999999999999999999999999985
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=4.7e-16 Score=108.06 Aligned_cols=69 Identities=25% Similarity=0.594 Sum_probs=64.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018143 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
|||+|||..+|+++|+++|++||.|..+.+..+..+. +|+|||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999988864444 89999999999999999999999999999986
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1e-15 Score=125.22 Aligned_cols=82 Identities=37% Similarity=0.590 Sum_probs=79.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+..+|.|.|||.++++.+|++||.+||.|.++.+.+++.||.++|||||.|.+.++|.+||..|||.-++.--|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 018143 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=2.8e-15 Score=104.10 Aligned_cols=70 Identities=49% Similarity=0.851 Sum_probs=65.2
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 109 i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
|||+|||+++++++|+++|+.||.|..+.+..++. |.++|+|||+|.+.++|.+|+..+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 99999999999999999999999998999999884
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.4e-15 Score=129.45 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=74.6
Q ss_pred ccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 277 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
......++|+|+|||+..-+-||+.+|.+||+|.+|.|+.+..|+||||||+|+++++|.+|-.+|+|..+.||+|.|.-
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 33345689999999999999999999999999999999999999999999999999999999999999999999999863
No 61
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.60 E-value=1.4e-14 Score=129.84 Aligned_cols=163 Identities=16% Similarity=0.222 Sum_probs=128.2
Q ss_pred cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeee
Q 018143 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
..|.++.|||++|.++|..+|+.++ |..+.+.+. +++..|-|||+|.+.+++.+|++.- ...+..+.|.|-.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~Alkkd---R~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG--IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKD---RESMGHRYIEVFT 82 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc--eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhh---HHHhCCceEEEEc
Confidence 3467799999999999999999998 898777654 7899999999999999999999863 3356677776654
Q ss_pred cCCCCCCC---cccc--ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEcCCCCCCC-CCeEEEEeCCHHHHHHHH
Q 018143 267 ADPKSTPD---HSAA--ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAV 339 (360)
Q Consensus 267 ~~~~~~~~---~~~~--~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~-kg~afV~F~~~~~A~~A~ 339 (360)
+.+..... +... ..+...|.+++||+.+|+++|.++|+-.-.|.. |.++.+..++ .|-|||+|.+.+.|++|+
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 43322111 1111 135578999999999999999999998765655 6677777666 899999999999999999
Q ss_pred HhhCCceeCCeeEeEEeee
Q 018143 340 KDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 340 ~~lng~~~~G~~l~v~p~~ 358 (360)
.. |...|..|-|-|++..
T Consensus 163 ~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 163 GR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred HH-HHHhhccceEEeehhH
Confidence 95 7778888888887654
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.8e-15 Score=123.31 Aligned_cols=78 Identities=33% Similarity=0.681 Sum_probs=72.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
-++|||+||||.++.+.|+++|.+||.|..+.++.++.||+|+|||||.|++.++|.+|++. -+-.|+||+..|.++.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999964 4567899999887763
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.8e-15 Score=123.32 Aligned_cols=164 Identities=27% Similarity=0.438 Sum_probs=128.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCCc
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
..+||++||+.+.+.+|..||..||.+..+.+. .||+||+|.+..+|..|+..+++..|.|..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999999775 568999999999999999999999999988888887532
Q ss_pred cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeee
Q 018143 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
.. . .+.+.+ +++.. |
T Consensus 74 ~~-----------------------~-------------~g~~~~--------------------------g~r~~---~ 88 (216)
T KOG0106|consen 74 RR-----------------------G-------------RGRPRG--------------------------GDRRS---D 88 (216)
T ss_pred cc-----------------------c-------------cCCCCC--------------------------CCccc---h
Confidence 10 0 001100 00000 0
Q ss_pred cCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce
Q 018143 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
.... .......+.|+|.|++..+.+.+|...|.++|.+....+. .++|||+|.+..+|.+|+..|+|..
T Consensus 89 ~~~~-----~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~------~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRRY-----RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR------RNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhcc-----CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh------ccccceeehhhhhhhhcchhccchh
Confidence 0000 0111345689999999999999999999999999665552 2789999999999999999999999
Q ss_pred eCCeeEeE
Q 018143 347 IDGKSHLH 354 (360)
Q Consensus 347 ~~G~~l~v 354 (360)
+.|+.|.+
T Consensus 158 ~~~~~l~~ 165 (216)
T KOG0106|consen 158 LNGRRISV 165 (216)
T ss_pred hcCceeee
Confidence 99999987
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=5.4e-15 Score=102.66 Aligned_cols=69 Identities=32% Similarity=0.628 Sum_probs=63.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018143 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
|+|+|||..+++++|+.+|+.||.|..|++...+.+. +|+|||+|.++++|.+|+..++|..|+|++|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999887655 89999999999999999999999999999984
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=123.18 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=68.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++|||+|||+.+|+.+|+++|+.||.|.+|.|+.++. .+|||||+|.++.+|..||. |||..|.|+.|.|.|.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEec
Confidence 46999999999999999999999999999999988764 36999999999999999996 9999999999999885
No 66
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=8.5e-14 Score=109.12 Aligned_cols=152 Identities=17% Similarity=0.320 Sum_probs=127.0
Q ss_pred CccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCee
Q 018143 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
...+|||+|||..+-+.+|..+|.+||. |..|.+.. .....+||||.|.++.+|..|+..- .++...+..++|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~-i~~ieLK~----r~g~ppfafVeFEd~RDAeDAiygR--dGYdydg~rLRV 77 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGR-IREIELKN----RPGPPPFAFVEFEDPRDAEDAIYGR--DGYDYDGCRLRV 77 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcc-eEEEEecc----CCCCCCeeEEEecCccchhhhhhcc--cccccCcceEEE
Confidence 4578999999999999999999999998 99998844 3456789999999999999998764 466788889998
Q ss_pred eecCCCCCCCc--------------------cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCe
Q 018143 265 SWADPKSTPDH--------------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF 324 (360)
Q Consensus 265 ~~~~~~~~~~~--------------------~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~ 324 (360)
.++........ .+.......+.|++||.+-++++|++...+-|.|....+.++ |+
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~ 152 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GV 152 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cc
Confidence 88765532111 122233578999999999999999999999999999888777 78
Q ss_pred EEEEeCCHHHHHHHHHhhCCceeC
Q 018143 325 GFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 325 afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
+.|+|...++..=|+..|....+.
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeeeehhhHHHHHHhhcccccc
Confidence 999999999999999999987664
No 67
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=5.7e-16 Score=120.91 Aligned_cols=80 Identities=31% Similarity=0.651 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.++.-|||+|||+.+|+.+|.-.|++||.|..|.+++++.||+|+||||+.|.++.+...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999764
No 68
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=7.5e-14 Score=124.37 Aligned_cols=175 Identities=34% Similarity=0.613 Sum_probs=126.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+.+|+++|..+|.+||.|..+.+..++.+|+++|||||.|.+.+.|..|+..+++..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred -ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCee
Q 018143 186 -KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 186 -~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
... +...... .........
T Consensus 195 ~~~~-----------------------------------~~~~~~~---------------~~~~~~~~~---------- 214 (306)
T COG0724 195 ASQP-----------------------------------RSELSNN---------------LDASFAKKL---------- 214 (306)
T ss_pred cccc-----------------------------------ccccccc---------------cchhhhccc----------
Confidence 000 0000000 000000000
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhh
Q 018143 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l 342 (360)
.............+++.+++..++...+...|..+|.+..+.+....... ....++.+.....+..+....
T Consensus 215 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T COG0724 215 -------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRG 287 (306)
T ss_pred -------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccc
Confidence 00001111345689999999999999999999999999887777665543 333445555555555555544
Q ss_pred CCcee
Q 018143 343 EKYEI 347 (360)
Q Consensus 343 ng~~~ 347 (360)
++...
T Consensus 288 ~~~~~ 292 (306)
T COG0724 288 NKKKI 292 (306)
T ss_pred cceee
Confidence 44333
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=2.1e-14 Score=121.34 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.++. ++|||||+|.+.+.|..|| .|+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 5799999999999999999 5999999999999999864
No 70
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.5e-14 Score=121.75 Aligned_cols=81 Identities=28% Similarity=0.487 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+-+||||+.|++++++..|+..|..||+|+.|+|+++..||+++|||||+|....++..|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 36689999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 018143 184 E 184 (360)
Q Consensus 184 ~ 184 (360)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 5
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.3e-14 Score=106.79 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+.++||||+||++.+|++.|.+||+.+|+|..|.+=.++.+..+.|||||+|.+.++|..|+..++++.+..++|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999999999998999999999999999999999999999999999999875
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=2.4e-14 Score=128.00 Aligned_cols=78 Identities=23% Similarity=0.489 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCH--HHHHHHHHHhcCCccCCeEEEEee
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK--EFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...+||||||++.+|+++|+.+|..||.|.+|.|+ +.|| +|||||+|.+. ..+.+||..|||..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35789999999999999999999999999999999 4457 99999999987 789999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9874
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=7.8e-14 Score=98.74 Aligned_cols=74 Identities=23% Similarity=0.449 Sum_probs=68.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
-++.|||+|||+.+|.+++.++|.+||.|..|+|-..+.+ +|-|||.|.+..+|.+|+..|+|.-++++-|.|-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 4578999999999999999999999999999999877654 5999999999999999999999999999998874
No 74
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=8.1e-14 Score=98.66 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
|.-.+.|||+|||+.+|.+++.++|..||.|..|++=..+ ..+|.|||.|.+..+|++|+..|+|..+.++.|.|.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3457889999999999999999999999999999996654 4589999999999999999999999999999999998
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
.++.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 8754
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.7e-14 Score=103.85 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=71.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..++||||+||.+.++++.|.++|+++|.|..|.|-.++.+. -|||||+|-+.++|..|++.+||+.++.+.|++-+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 346899999999999999999999999999999998877665 89999999999999999999999999999998754
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.50 E-value=6e-13 Score=117.47 Aligned_cols=166 Identities=19% Similarity=0.349 Sum_probs=134.9
Q ss_pred ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeee
Q 018143 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.+.+||.|+|+.+.+++|+.+|......|..|.+..+ ..++++|+|.|+|+.++.+++|+..|+ .+.+.+|++.+.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~ln--k~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLN--KYEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhh--hccccCceEEEe
Confidence 4569999999999999999999876555999999997 689999999999999999999999997 457788887665
Q ss_pred ecCCCCCCC-----------------------------------------------------------------------
Q 018143 266 WADPKSTPD----------------------------------------------------------------------- 274 (360)
Q Consensus 266 ~~~~~~~~~----------------------------------------------------------------------- 274 (360)
-.......+
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 332210000
Q ss_pred --------ccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCc
Q 018143 275 --------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 275 --------~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
+...++....+||.||.+.+....|.+.|.-.|.|..|.+..++.+. +|||.++|..+-.|..||..|++.
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 00001114679999999999999999999999999999999888877 999999999999999999999976
Q ss_pred eeCCeeEeEE
Q 018143 346 EIDGKSHLHF 355 (360)
Q Consensus 346 ~~~G~~l~v~ 355 (360)
-+..++.+++
T Consensus 280 g~~~~~~~~R 289 (608)
T KOG4212|consen 280 GLFDRRMTVR 289 (608)
T ss_pred CCccccceee
Confidence 6666665554
No 77
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.2e-13 Score=113.24 Aligned_cols=76 Identities=22% Similarity=0.405 Sum_probs=71.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..++|.|.||+.++++.+|+++|.+||.|.+|.+.+++.++ ||||||.|.+.++|.+||..|||+-++.--|+|.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 46789999999999999999999999999999999998877 99999999999999999999999999988888876
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.4e-13 Score=114.45 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=68.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...+|+|+||++.+|+++|+++|+.||.|.+|+|+.+.. .++||||+|.++.+|..|+. |||..|.|+.|.|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 357999999999999999999999999999999998843 35899999999999999996 9999999999999884
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.5e-13 Score=114.26 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+.+.+|||+||++.+|+.+|++||+.||.|.+|+|+++ +.++|||||+|.++..|..|+ .|+|..|.+++|.|.+.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 35789999999999999999999999999999999998 455689999999999999999 69999999999999886
Q ss_pred C
Q 018143 184 E 184 (360)
Q Consensus 184 ~ 184 (360)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2e-13 Score=94.87 Aligned_cols=72 Identities=46% Similarity=0.803 Sum_probs=67.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 108 ~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
+|||+|||+.++.++|+.+|.+||.|..+.+...+ +.++|+|||+|.+...|..|+..+++..+.|+++.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7889999999999999999999999999999998873
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2.6e-13 Score=94.23 Aligned_cols=72 Identities=25% Similarity=0.526 Sum_probs=66.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
+|+|+|||..++..+|+.+|++||.|..+.+.......+|+|||+|.+..+|.+|+..++|..|.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999887763338999999999999999999999999999999863
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.48 E-value=5.7e-14 Score=112.08 Aligned_cols=81 Identities=30% Similarity=0.500 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..-.+|.|-||-+-+|.++|+.+|.+||.|..|.|..++.|+.++|||||.|....+|+.|+.+|+|.+|+|+.|+|+.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 018143 184 E 184 (360)
Q Consensus 184 ~ 184 (360)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 5
No 83
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=8.7e-14 Score=103.34 Aligned_cols=80 Identities=30% Similarity=0.534 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
.+-.|||.++...+|+++|.+.|..||+|+.+++-.++.||..+|||.|+|.+.+.|++|+..+||..|.|++|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999983
No 84
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.5e-13 Score=106.99 Aligned_cols=76 Identities=29% Similarity=0.493 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
-.++|||+||+..++..+|...|..||+|..|+|-.++ .|||||+|.++-+|..|+..|+|..|.|..|+|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36889999999999999999999999999999998755 7999999999999999999999999999999999875
Q ss_pred C
Q 018143 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=117.20 Aligned_cols=80 Identities=26% Similarity=0.482 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|+|+|||+...+.||+.+|.+||.|.+|.|+-+. --|||||||.|.+.++|.+|.+.|||..+.||+|.|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345789999999999999999999999999999999875 368999999999999999999999999999999999988
Q ss_pred CC
Q 018143 184 ET 185 (360)
Q Consensus 184 ~~ 185 (360)
..
T Consensus 172 Ta 173 (376)
T KOG0125|consen 172 TA 173 (376)
T ss_pred ch
Confidence 64
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=2e-13 Score=122.21 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=67.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCH--HHHHHHHHhhCCceeCCeeEeEEe
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER--SSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~--~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
...+|||+||++.+++++|+.+|+.||.|.+|.|++..+ ||||||+|.+. .++.+||..|||..|.|+.|+|-.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 346899999999999999999999999999999994433 89999999987 789999999999999999999865
No 87
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.8e-13 Score=106.57 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=66.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+.|||+||+..++..+|..+|..||.|..|-|...+. |||||+|+++.+|..|+..|+|..|+|..|+|.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 57899999999999999999999999999988876554 8999999999999999999999999999999864
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.7e-13 Score=101.74 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=75.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...+.|||+++...+|+++|.+.|..||.|+.+++..++.+. ||||+|+|.+...|++|+..|||..+.|.+|.|-||
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 456899999999999999999999999999999998887665 999999999999999999999999999999999999
Q ss_pred ec
Q 018143 358 FV 359 (360)
Q Consensus 358 ~v 359 (360)
+|
T Consensus 150 Fv 151 (170)
T KOG0130|consen 150 FV 151 (170)
T ss_pred Ee
Confidence 97
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=4.1e-13 Score=92.86 Aligned_cols=71 Identities=48% Similarity=0.863 Sum_probs=67.3
Q ss_pred EcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 111 v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
|+|||+.++.++|+.+|++||.|..+.+...+.++.++|+|||+|.+.+.|..|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988889999999999999999999999999999999998873
No 90
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.44 E-value=2.3e-13 Score=108.67 Aligned_cols=74 Identities=23% Similarity=0.470 Sum_probs=70.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
..+|.|-||.+.++.++|+.+|.+||.|..|.||.+..+. +|||||.|....+|+.|+.+|.|..++|+.|+|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 4689999999999999999999999999999999998876 9999999999999999999999999999999874
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=2.2e-12 Score=89.96 Aligned_cols=74 Identities=47% Similarity=0.846 Sum_probs=68.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 108 ~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+|+|+|||+.+++++|+.+|+.||.|..+.+...+.+ ..+|+|||+|.+.+.|..|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987764 7789999999999999999999999999999998864
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.8e-13 Score=108.37 Aligned_cols=83 Identities=34% Similarity=0.613 Sum_probs=80.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||++|...+|+.-|...|-+||.|..|.++.+..+++.+|||||+|.-.++|..|+..||+..|.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccc
Q 018143 185 TKN 187 (360)
Q Consensus 185 ~~~ 187 (360)
|.+
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 754
No 93
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.3e-12 Score=110.23 Aligned_cols=75 Identities=25% Similarity=0.469 Sum_probs=70.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.+-+||||..|++.+++..|+..|+.||.|+.|+|+.++-++ +|||||+|.+..+..+|++...|.+|+|+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 556899999999999999999999999999999999986544 999999999999999999999999999999987
No 94
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.40 E-value=2.9e-12 Score=89.40 Aligned_cols=73 Identities=27% Similarity=0.507 Sum_probs=67.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+|+|+|||..+++.+|+++|+.||.|..+.+.....+. +|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999998776544 79999999999999999999999999999998864
No 95
>smart00360 RRM RNA recognition motif.
Probab=99.40 E-value=1.6e-12 Score=89.89 Aligned_cols=69 Identities=29% Similarity=0.562 Sum_probs=62.8
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 287 V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
|+|||..++.++|+++|+.||.|..+.++..+. +. +|+|||+|.++++|.+|+..|++..+.|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999887764 23 8999999999999999999999999999998863
No 96
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.7e-11 Score=109.87 Aligned_cols=184 Identities=19% Similarity=0.321 Sum_probs=122.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCC--Ccce---EEEEEecCHHHHHHHHHHhcCCccCCeE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKG---FAFVSFRSKEFAKKAIDELHSKELKGKT 177 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g---~a~v~f~~~~~a~~a~~~l~~~~~~g~~ 177 (360)
+.-++.||||+||++++++.|...|..||.+..=.-.+....+ ..+| |+|+.|.+...++.-+.++.- ....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 3457799999999999999999999999987433221111111 2355 999999999999888876653 2222
Q ss_pred EEEeecCCc-cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcc
Q 018143 178 IRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256 (360)
Q Consensus 178 l~v~~~~~~-~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~ 256 (360)
+-+..+.+. +...|. |...++... .+.
T Consensus 333 ~yf~vss~~~k~k~VQ---------------------IrPW~laDs-------------------------------~fv 360 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQ---------------------IRPWVLADS-------------------------------DFV 360 (520)
T ss_pred eEEEEecCccccccee---------------------EEeeEeccc-------------------------------hhh
Confidence 222211110 000000 222211100 000
Q ss_pred cCCCCCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEcCCCCC-CC-CCeEEEEeCCHH
Q 018143 257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ-RHGEVTKVVMPPGKS-GK-RDFGFIHYAERS 333 (360)
Q Consensus 257 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~-~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~ 333 (360)
+. ......+.+||||++||..++..+|..+|. -||.|..|-|-.+.. +. +|-|-|+|.+..
T Consensus 361 ~d----------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqq 424 (520)
T KOG0129|consen 361 LD----------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQ 424 (520)
T ss_pred hc----------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccH
Confidence 00 011114567999999999999999999999 599999999998843 44 999999999999
Q ss_pred HHHHHHHh----hCCceeCCeeEeEEeee
Q 018143 334 SALKAVKD----TEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 334 ~A~~A~~~----lng~~~~G~~l~v~p~~ 358 (360)
+-.+||.+ |++..| .++|.|+|..
T Consensus 425 sYi~AIsarFvql~h~d~-~KRVEIkPYv 452 (520)
T KOG0129|consen 425 AYIKAISARFVQLDHTDI-DKRVEIKPYV 452 (520)
T ss_pred HHHHHHhhheEEEecccc-ceeeeeccee
Confidence 99999985 334444 4589999864
No 97
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.37 E-value=1.3e-12 Score=119.76 Aligned_cols=79 Identities=37% Similarity=0.718 Sum_probs=77.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
+.|||||||++++++.|..+|+..|.|.+++++.|+.||+++||||++|.+.+.|.+|++.|||..+.||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999864
No 98
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.1e-13 Score=108.22 Aligned_cols=77 Identities=21% Similarity=0.368 Sum_probs=72.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.-|||+|||+.+|+.+|.-+|++||.|+.|.+++++.++ +||||+.|++..+...|+..|||..|.||.|+|-.|
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35679999999999999999999999999999999998766 999999999999999999999999999999998665
No 99
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.36 E-value=4.5e-12 Score=83.57 Aligned_cols=55 Identities=27% Similarity=0.452 Sum_probs=50.2
Q ss_pred HHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 299 L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
|+.+|++||.|..|.+...+ +++|||+|.+.++|.+|+..|||..|.|++|.|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68899999999999998776 48999999999999999999999999999999875
No 100
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=2.1e-12 Score=105.65 Aligned_cols=76 Identities=22% Similarity=0.437 Sum_probs=66.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.-++|||++||..+..+.|+++|.+||.|....++.++.+. ||||||+|.+.++|.+|++-. +-.|+||+..|.-.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 34689999999999999999999999999998888887655 999999999999999999964 45789988776543
No 101
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1.6e-13 Score=130.51 Aligned_cols=218 Identities=16% Similarity=0.189 Sum_probs=178.5
Q ss_pred CCCCEEEEcCCCCCCCHH-HHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 104 PNGSEVFIGGLPKDASEE-DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~-~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
-..+...+.++-+..... ..+..|+.+|.|..+++......-....++++.+.....+..|.. ..+..+.++...|..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCC
Confidence 355667788887766555 567889999999999998743323334489999999999999985 588888889888877
Q ss_pred cCCc----------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHH
Q 018143 183 SETK----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (360)
Q Consensus 183 ~~~~----------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a 246 (360)
+.+. .++|++||+..+...+|...|.++|. +..+++... ...++.+|+||+.|.....+.+|
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhhh
Confidence 7653 36899999999999999999999997 777777633 56788999999999999999988
Q ss_pred HHHHhccCcccCCCCCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeE
Q 018143 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFG 325 (360)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~a 325 (360)
+....+. +.| ...++|+|+|+..|.+.|+.+|+++|.+..++++..+.|. +|.|
T Consensus 726 V~f~d~~---~~g----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a 780 (881)
T KOG0128|consen 726 VAFRDSC---FFG----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKA 780 (881)
T ss_pred hhhhhhh---hhh----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccce
Confidence 8754321 111 2479999999999999999999999999999999888888 9999
Q ss_pred EEEeCCHHHHHHHHHhhCCceeCC
Q 018143 326 FIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 326 fV~F~~~~~A~~A~~~lng~~~~G 349 (360)
+|.|.+..+|.+++....+..+.-
T Consensus 781 ~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 781 RVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred eccCCCcchhhhhcccchhhhhhh
Confidence 999999999999998877665543
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.1e-11 Score=114.28 Aligned_cols=166 Identities=26% Similarity=0.471 Sum_probs=131.0
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
..+-....|||++||...++..+++++..||++....++.+..+|.++||||.+|.+......|+..|||..+.++.|.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 34446778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcc------------------------------ceecCCC--CCC-CC-------HHHHHHHHHhhCCceeEEEEe
Q 018143 181 SLSETKN------------------------------RLFIGNV--PKN-WT-------EDEFRKVIEDVGPGVETIELI 220 (360)
Q Consensus 181 ~~~~~~~------------------------------~l~v~nl--~~~-~~-------~~~l~~~f~~~g~~i~~~~~~ 220 (360)
+.+-... .|++.|+ |.. .. -++++.-+.+||. |..|.+.
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ip 442 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIP 442 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecC
Confidence 8874321 1111111 000 01 2344455678887 9999998
Q ss_pred eC-C-CCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCC
Q 018143 221 KD-P-QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269 (360)
Q Consensus 221 ~~-~-~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~ 269 (360)
++ . .....+.|..||+|.+.+++.+|...|+|. ++.++.+...|...
T Consensus 443 r~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr--KF~nRtVvtsYyde 491 (500)
T KOG0120|consen 443 RPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGR--KFANRTVVASYYDE 491 (500)
T ss_pred CCCCCCCcCCCcccEEEEecChHHHHHHHHHccCc--eeCCcEEEEEecCH
Confidence 87 2 223456778999999999999999999866 66788776666543
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=9.4e-12 Score=85.98 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=50.0
Q ss_pred HHHHHHHHh----hcCCeeEEE-cCCCC----CCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 296 TEKIKELFQ----RHGEVTKVV-MPPGK----SGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 296 ~~~L~~~f~----~~G~v~~v~-i~~~~----~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
+++|+++|+ +||.|.+|. ++.++ +..+|||||+|.+.++|.+|+..|||+.|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999885 43333 223999999999999999999999999999999986
No 104
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=1.7e-11 Score=80.78 Aligned_cols=56 Identities=38% Similarity=0.705 Sum_probs=51.0
Q ss_pred HHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 123 LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 123 l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
|+++|++||.|..+.+.... +++|||+|.+.++|..|+..|||..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998764 589999999999999999999999999999999885
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.28 E-value=1.6e-11 Score=84.84 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=55.4
Q ss_pred HHHHHHhhc----cCCCeEEEE-EecCCCC--CCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 120 EEDLRDLCE----PIGDVFEVR-LMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 120 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
+++|+.+|+ .||.|.++. ++.++.+ |+++|||||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888998 999999996 6666666 899999999999999999999999999999999976
No 106
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.26 E-value=2.3e-11 Score=97.65 Aligned_cols=84 Identities=27% Similarity=0.485 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccC-CCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPI-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
......++|..+|..+-+..+..+|.+| |.|.++++.+++.||.|+|||||+|.+.+.|.-|.+.||+..|.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3466789999999999999999999998 789999999999999999999999999999999999999999999999998
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87654
No 107
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.25 E-value=2.7e-11 Score=107.87 Aligned_cols=76 Identities=29% Similarity=0.569 Sum_probs=71.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++|||+|||..+++++|+.+|.+||.|..|.+..++. +. +|||||.|.+..+|..|+..++|..|.|++|.|.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 58999999999999999999999999999999988863 33 999999999999999999999999999999999875
No 108
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=2.9e-11 Score=110.52 Aligned_cols=71 Identities=27% Similarity=0.491 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
-..++|+|-|||..++.++|+.+|..||.|..|+.-+ ..+|.+||+|.+.-.|++|++.|++..+.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3678999999999999999999999999999976644 4478999999999999999999999999998887
No 109
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.1e-11 Score=103.00 Aligned_cols=86 Identities=27% Similarity=0.515 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.-+++|.|||-.||....+.+|..+|-+||.|.+.++..++.|+.+|.|+||.|.|+.+|+.||..|||+.|+=++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCcc
Q 018143 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
.-+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 877653
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.7e-11 Score=98.87 Aligned_cols=76 Identities=22% Similarity=0.473 Sum_probs=70.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...++|||++|...+|+.-|...|-+||.|..|.||.+.... ||||||+|.-.++|.+|+..||+..+.||.|+|-
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 345799999999999999999999999999999999887554 9999999999999999999999999999999985
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.17 E-value=6.6e-11 Score=108.68 Aligned_cols=74 Identities=22% Similarity=0.403 Sum_probs=70.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+.+||+|||+.++++.|..+|+..|.|.++++..++.++ +||||++|.+.++|.+|++.|||..+.||+|+|-+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 789999999999999999999999999999999888765 99999999999999999999999999999999864
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.8e-11 Score=102.90 Aligned_cols=86 Identities=21% Similarity=0.450 Sum_probs=81.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
..++...|||.-|.+-+|.++|.-+|+.||+|.+|.++++..||-+..||||+|.+.+++.+|+=.|++..|..+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 018143 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++++-.
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 987543
No 113
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.15 E-value=4.4e-10 Score=104.97 Aligned_cols=162 Identities=13% Similarity=0.058 Sum_probs=107.7
Q ss_pred ecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCee-----
Q 018143 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI----- 264 (360)
Q Consensus 190 ~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v----- 264 (360)
-++..+++....+++++|...- +....+..+ ...+...|.++|.|...+.+.+|+..-+ ...-.|.+.+
T Consensus 315 ~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~---~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 315 NYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNP---SDDVNRPFQTGPPGN 388 (944)
T ss_pred eecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCc---hhhhhcceeecCCCc
Confidence 3456677778888888887433 444444433 2223347889999999999999976421 1111111111
Q ss_pred ----------------------------eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEcC
Q 018143 265 ----------------------------SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMP 315 (360)
Q Consensus 265 ----------------------------~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~ 315 (360)
..+.....+..........+|||..||..++...+.++|...-.|+. |.|-
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 00000001111112223589999999999999999999999777765 7776
Q ss_pred CCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 316 PGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 316 ~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....+. ++.|||.|..+.++..|...-..+-++-|.|+|.++
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 666655 899999999999999999876666777788888775
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.15 E-value=6.4e-10 Score=103.93 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=65.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
+.|.+.|+|++++-++|.++|..|-.+ .+|+|..+..+. .|-|+|-|++.+.|.+|...|+++.|..|+|.++
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 589999999999999999999999866 467777776666 8999999999999999999999999999998875
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=1.2e-09 Score=95.40 Aligned_cols=144 Identities=22% Similarity=0.304 Sum_probs=112.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccC----CCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC------
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPI----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG------ 175 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g------ 175 (360)
.-.|.+++||+++|+.++..||.+- |....|.+++.++ |+..|-|||.|...+.|+.||.. |...|+-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 4578999999999999999999743 3455677777655 99999999999999999999965 2222211
Q ss_pred -------------------------------eEEEEeecCCccceecCCCCCCCCHHHHHHHHHhhCCceeE--EEEeeC
Q 018143 176 -------------------------------KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET--IELIKD 222 (360)
Q Consensus 176 -------------------------------~~l~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~--~~~~~~ 222 (360)
-...|...+++..|.+++||+..+.++|..+|..|...|.. +.++-.
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 22233444556789999999999999999999999876665 666654
Q ss_pred CCCCCCCccEEEEEecCHHHHHHHHHHHhcc
Q 018143 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (360)
Q Consensus 223 ~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~ 253 (360)
..|++.|-|||+|.+.+.|..|...-+++
T Consensus 319 --~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 319 --GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred --CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 67899999999999999999888766544
No 116
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.1e-10 Score=94.44 Aligned_cols=138 Identities=25% Similarity=0.384 Sum_probs=115.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
+.++..+||||.|+-..++++-|.++|-+.|+|..|.|..... ++.+ ||||.|.+.-...-|++.+||..+.++.+.|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 3455678999999999999999999999999999999988776 5556 9999999999999999999999999999877
Q ss_pred eecCCccceecCC----CCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHH
Q 018143 181 SLSETKNRLFIGN----VPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250 (360)
Q Consensus 181 ~~~~~~~~l~v~n----l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~ 250 (360)
.+ +.++ |...++.+.+...|+..|+ +..+++.++ ..++.+.++++.+...-..-.++..+
T Consensus 82 ~~-------r~G~shapld~r~~~ei~~~v~s~a~p-~~~~R~~~~--~d~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 82 TL-------RCGNSHAPLDERVTEEILYEVFSQAGP-IEGVRIPTD--NDGRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred cc-------ccCCCcchhhhhcchhhheeeecccCC-CCCcccccc--ccCCccCccchhhhhhhcCcHHhhhh
Confidence 54 3444 6666888889999999998 999999886 34788888888887766666666554
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=3.6e-11 Score=114.86 Aligned_cols=133 Identities=24% Similarity=0.303 Sum_probs=117.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
...++||+||++.+...+|...|..+|.+..+++......++.+|+||+.|...+.+.+|+....+..++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 4568999999999999999999999999988888877778999999999999999999999765555444
Q ss_pred CccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 018143 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251 (360)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~ 251 (360)
+..++|+|+|+..|.+.++.++..+|. +...+++.. ..|+++|.++|.|.+..++.++.....
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccch
Confidence 678999999999999999999999998 888886664 568899999999999999988776543
No 118
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.97 E-value=1.6e-09 Score=87.16 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=68.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~-G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.....++|..+|..+.+..|..+|.+| |.|..+++.+++. |+ ||||||+|.+.+.|.-|-..||++.|.|+.|.|..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345679999999999999999999998 7788889855554 44 99999999999999999999999999999999876
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
+
T Consensus 127 m 127 (214)
T KOG4208|consen 127 M 127 (214)
T ss_pred e
Confidence 5
No 119
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.95 E-value=2.4e-09 Score=87.68 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=65.4
Q ss_pred ceEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 283 KALYVKNIPDNTSTEKIKE----LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~----~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.||||.||+..+..++|+. +|+.||.|..|....... -||-|||.|++...|..|+.+|+|+.|-|+.+++-+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~K-mRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPK-MRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCC-ccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999988 999999999988765432 269999999999999999999999999999998754
No 120
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.95 E-value=1.7e-09 Score=102.39 Aligned_cols=72 Identities=24% Similarity=0.451 Sum_probs=69.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
++||||+.||..+++.+|.++|..||.|.+|.+...+ |+|||.+....+|.+|+.+|++..+.++.|+++|.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 7999999999999999999999999999999987765 89999999999999999999999999999999985
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.93 E-value=1.5e-09 Score=95.35 Aligned_cols=164 Identities=16% Similarity=0.251 Sum_probs=122.5
Q ss_pred ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeee
Q 018143 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
..++|++++.+.+.......++..+|. ...+.+... .....++|++++.|.....+..++...... .+.++.+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~-~~~~~~S~~-~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~--~~~~~~~~~d 163 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGL-RVDARSSSL-EDSLSSKGGLSVHFAGKSQFFAALEESGSK--VLDGNKGEKD 163 (285)
T ss_pred cccccccccccchhhccccccchhhcC-cccchhhhh-ccccccccceeeccccHHHHHHHHHhhhcc--ccccccccCc
Confidence 567889999999988888888888887 444444433 466788999999999999999998875432 2233333222
Q ss_pred ecCCCC----CCCccccccccce-EEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHH
Q 018143 266 WADPKS----TPDHSAAASQVKA-LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKA 338 (360)
Q Consensus 266 ~~~~~~----~~~~~~~~~~~~~-l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A 338 (360)
...... ............+ ++|+||++.++..+|+..|..+|.|..++++....+. +|||||.|.+...+.+|
T Consensus 164 l~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 164 LNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred ccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 222211 1111111223344 4499999999999999999999999999999888766 99999999999999999
Q ss_pred HHhhCCceeCCeeEeE
Q 018143 339 VKDTEKYEIDGKSHLH 354 (360)
Q Consensus 339 ~~~lng~~~~G~~l~v 354 (360)
+.. ++..+.|+++++
T Consensus 244 ~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 244 LND-QTRSIGGRPLRL 258 (285)
T ss_pred hhc-ccCcccCccccc
Confidence 998 888888887765
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=2.9e-09 Score=92.08 Aligned_cols=78 Identities=27% Similarity=0.487 Sum_probs=69.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHh-cCCccCCeEEEE
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRC 180 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v 180 (360)
......+|||++|-..+++.+|+++|.+||.|.+++++.. +++|||.|.+..+|..|.... +...|+|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3446679999999889999999999999999999999865 558999999999999988654 667789999999
Q ss_pred eecCC
Q 018143 181 SLSET 185 (360)
Q Consensus 181 ~~~~~ 185 (360)
.|+.+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99987
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.93 E-value=2.1e-09 Score=98.32 Aligned_cols=81 Identities=25% Similarity=0.501 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
.++.|||.+|...+...+|++||++||+|.-++++.+..+.-.++|+||.+.+...|.+||..||.+.|.|+-|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 56799999999999999999999999999999999998888889999999999999999999999999999999998875
Q ss_pred C
Q 018143 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 3
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.91 E-value=2.8e-09 Score=101.04 Aligned_cols=75 Identities=28% Similarity=0.566 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
-++||||++||..+++.+|..+|..||.|.+|.++. ++|+|||.+....+|.+|+.+|++..+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 578999999999999999999999999999999864 47899999999999999999999999999999999986
Q ss_pred C
Q 018143 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.3e-09 Score=91.08 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=71.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++.+.|||.-|.+-+|.++|.-+|+.||+|.++.++++..++ -.||||+|.+.+++.+|+-.|.+..|+.++|+|-
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3566899999999999999999999999999999988887665 7799999999999999999999999999999973
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=6.6e-09 Score=89.89 Aligned_cols=73 Identities=25% Similarity=0.411 Sum_probs=65.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh-hCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD-TEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~-lng~~~~G~~l~v~p 356 (360)
...++|||++|-..+++.+|++.|-+||.|.+|++...+ ++|||+|.+..+|..|... +|...|+|++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 456899999999999999999999999999999998887 8999999999999988766 556788999999987
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=2.7e-09 Score=102.71 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=135.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...++|||++||+..+++.+|+..|..+|.|..|.|-.-+. +.-..||||.|-+...+-+|+..+.+..|..-.+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34778999999999999999999999999999999866543 45566899999999999999988888887655555555
Q ss_pred c----CCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccC
Q 018143 183 S----ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (360)
Q Consensus 183 ~----~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~ 258 (360)
. .+.+.+++++|+.-+....|...|..||+ |..|.+-+ ...|+|+.|.+...+..|...+.+..+.-.
T Consensus 448 G~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp-ir~Idy~h-------gq~yayi~yes~~~aq~a~~~~rgap~G~P 519 (975)
T KOG0112|consen 448 GQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP-IRIIDYRH-------GQPYAYIQYESPPAAQAATHDMRGAPLGGP 519 (975)
T ss_pred cccccccceeeccCCCCCCChHHHHHHHhhccCc-ceeeeccc-------CCcceeeecccCccchhhHHHHhcCcCCCC
Confidence 4 34678999999999999999999999998 88877643 356999999999999999999998887777
Q ss_pred CCCCeeeecCCCC
Q 018143 259 GNTPTISWADPKS 271 (360)
Q Consensus 259 ~~~~~v~~~~~~~ 271 (360)
.+.+++.++.+..
T Consensus 520 ~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 520 PRRLRVDLASPPG 532 (975)
T ss_pred CcccccccccCCC
Confidence 7888888876554
No 128
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.84 E-value=4.2e-09 Score=92.53 Aligned_cols=162 Identities=20% Similarity=0.336 Sum_probs=130.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec-
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS- 183 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~- 183 (360)
..++.|++++.+.+...++..++..+|....+.+........++|++++.|...+.+..||.......+.++.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 5788999999999999999999999998888888887777999999999999999999999653333444443322211
Q ss_pred ---------------CCcccee-cCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHH
Q 018143 184 ---------------ETKNRLF-IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (360)
Q Consensus 184 ---------------~~~~~l~-v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 247 (360)
.+..+++ +++++..++.++|...|..+|. |..+++... ..++..+||+|+.|.....+.+++
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~-i~~~r~~~~-~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGE-ITSVRLPTD-EESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCc-ceeeccCCC-CCccchhhhhhhhhhhchhHHHHh
Confidence 1123444 9999999999999999999998 999999887 688999999999999999998877
Q ss_pred HHHhccCcccCCCCCeeeecCCCC
Q 018143 248 QKMLNANFKLDGNTPTISWADPKS 271 (360)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~~~~~~ 271 (360)
.. ....+.++++.+....+..
T Consensus 245 ~~---~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 245 ND---QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hc---ccCcccCcccccccCCCCc
Confidence 65 3446778878777766654
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.83 E-value=1.6e-09 Score=94.86 Aligned_cols=203 Identities=14% Similarity=0.177 Sum_probs=127.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCC---CCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE---SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...|-|.||.+.+|.+++..||...|.|..+.|+.+.. ..-....|||.|.+...+..|- .|.++++-++.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 34899999999999999999999999999999887432 2334568999999999988777 5788888888888866
Q ss_pred cCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCC
Q 018143 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (360)
Q Consensus 183 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~ 262 (360)
+... +-.... .|..++..-.-..+... .| |.|... .+..-|...
T Consensus 86 ~~~~-----------~~p~r~--af~~l~~~navprll~p---dg-------~Lp~~~-------------~lt~~nh~p 129 (479)
T KOG4676|consen 86 YGDE-----------VIPDRF--AFVELADQNAVPRLLPP---DG-------VLPGDR-------------PLTKINHSP 129 (479)
T ss_pred cCCC-----------CCccHH--HHHhcCcccccccccCC---CC-------ccCCCC-------------ccccccCCc
Confidence 5321 111111 44444320100111100 00 111000 000000000
Q ss_pred eeeecCCCCCCC--ccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHH
Q 018143 263 TISWADPKSTPD--HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 263 ~v~~~~~~~~~~--~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (360)
..-.-.|...+. ........++++|.+|+..+-..++...|..+|.|.+.++..+.. ..+|.|.|....+...|+.
T Consensus 130 ~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~--s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 130 NAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR--SSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred cceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC--CcchhhhHhhhhhHHHHHH
Confidence 000011111111 111112247899999999999999999999999999888765543 3688899999999999998
Q ss_pred hhCCceeC
Q 018143 341 DTEKYEID 348 (360)
Q Consensus 341 ~lng~~~~ 348 (360)
. +|+.+.
T Consensus 208 ~-~gre~k 214 (479)
T KOG4676|consen 208 S-HGRERK 214 (479)
T ss_pred h-cchhhh
Confidence 4 665554
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.81 E-value=1.2e-08 Score=93.56 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=69.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC--CCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~--~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...+.|||.+|...+-..+|+.+|++||+|+-..++.+.. +.++||||++.+.+.|.+||..|+.+.+.|+.|.|...
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3467899999999999999999999999999877765543 33899999999999999999999999999999998653
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=5.9e-09 Score=100.48 Aligned_cols=151 Identities=19% Similarity=0.340 Sum_probs=123.8
Q ss_pred ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeee
Q 018143 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.++||++||+..++..+|+..|..+|. +..+.|-+. ..++...|+||.|.+...+..|...+.+..+.-+ .+.+.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gk-ve~VDiKtP--~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g--~~r~g 446 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGK-VEEVDIKTP--HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG--THRIG 446 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhcc-ccccccccC--CCCcccchhhhhhhccccCcccchhhcCCccccC--ccccc
Confidence 478999999999999999999999998 999998664 3455566899999999999888887766544333 22222
Q ss_pred ecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc
Q 018143 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
+..+ ....++.+++++|+..+....|.+.|..||.|..|.+..+. .||+|.|.+...|+.|+..|-|.
T Consensus 447 lG~~--------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 447 LGQP--------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred cccc--------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccchhhHHHHhcC
Confidence 2222 22456789999999999999999999999999999887776 79999999999999999999999
Q ss_pred eeCCeeEe
Q 018143 346 EIDGKSHL 353 (360)
Q Consensus 346 ~~~G~~l~ 353 (360)
.|+|-.-+
T Consensus 515 p~G~P~~r 522 (975)
T KOG0112|consen 515 PLGGPPRR 522 (975)
T ss_pred cCCCCCcc
Confidence 99875443
No 132
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.78 E-value=3.7e-09 Score=87.72 Aligned_cols=75 Identities=25% Similarity=0.383 Sum_probs=65.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCC--------CCcce----EEEEEecCHHHHHHHHHHhcCCc
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------GESKG----FAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~--------~~~~g----~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
....||+++||+.+....|+++|++||.|-+|.+.+...+ |.+++ -|||+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999999999999999876654 33332 38999999999999999999999
Q ss_pred cCCeEEE
Q 018143 173 LKGKTIR 179 (360)
Q Consensus 173 ~~g~~l~ 179 (360)
|+|++-+
T Consensus 153 Iggkk~S 159 (278)
T KOG3152|consen 153 IGGKKKS 159 (278)
T ss_pred cCCCCCC
Confidence 9997643
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.78 E-value=2.6e-08 Score=84.38 Aligned_cols=80 Identities=25% Similarity=0.460 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
-.++|+|.|||+.++..+|++||..||.+..+.+-.++. |++.|.|-|.|...++|.+|++.+++..++|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 347899999999999999999999999888887777664 9999999999999999999999999999999999887765
Q ss_pred C
Q 018143 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.75 E-value=9.1e-08 Score=69.29 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=67.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcc--CCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccC----CeEEE
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK----GKTIR 179 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~----g~~l~ 179 (360)
.+||.|+|||...|...|.+++.. .|...-+.++.+..++.+.|||||-|.+++.|.+....++|..|. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 479999999999999999988754 367777888899999999999999999999999999999998885 34556
Q ss_pred EeecC
Q 018143 180 CSLSE 184 (360)
Q Consensus 180 v~~~~ 184 (360)
|.+|+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66654
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.74 E-value=4.8e-08 Score=70.76 Aligned_cols=66 Identities=15% Similarity=0.359 Sum_probs=58.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018143 283 KALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~--~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
+||+|+|||...|.++|.+++.. .|....+.+|.+-..+ .|||||.|.++..|.+-...++|+.|.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 68999999999999999999876 4677788888876544 899999999999999999999999986
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.74 E-value=1.8e-08 Score=92.16 Aligned_cols=80 Identities=23% Similarity=0.461 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
...+|||+|||++++...|+++|+.||.|+...|......+++.+||||+|.+...+..||.+ +...++|++|.|..-+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999999998877654456669999999999999999975 6888999999997655
Q ss_pred C
Q 018143 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
+
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 137
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.74 E-value=6.3e-08 Score=78.85 Aligned_cols=76 Identities=20% Similarity=0.355 Sum_probs=63.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCC-CCCC--CCeEEEEeCCHHHHHHHHHhhCCceeC---CeeEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-KSGK--RDFGFIHYAERSSALKAVKDTEKYEID---GKSHL 353 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~---G~~l~ 353 (360)
...+||||.+||.++...+|..+|..|-......|... +.++ +.+|||+|.++..|..|++.|||..|+ |..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999977776555433 3333 789999999999999999999999996 66666
Q ss_pred EE
Q 018143 354 HF 355 (360)
Q Consensus 354 v~ 355 (360)
+.
T Consensus 112 iE 113 (284)
T KOG1457|consen 112 IE 113 (284)
T ss_pred ee
Confidence 54
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.72 E-value=5.4e-08 Score=82.45 Aligned_cols=76 Identities=24% Similarity=0.367 Sum_probs=70.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
...+|+|.|||+.|+..+|+++|..||.+..+-+-.++.+. .|.|-|.|...++|.+|++.+||..++|+.|.+.-
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 34689999999999999999999999999999998888877 89999999999999999999999999999987653
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.4e-08 Score=93.31 Aligned_cols=72 Identities=26% Similarity=0.425 Sum_probs=65.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018143 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
..+..+|+|.|||..|+..+|..+|+.||.|..|+.-+.+ +|..||+|-+..+|++|+++||++.|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3567899999999999999999999999999998776655 48999999999999999999999999999886
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.65 E-value=5.4e-08 Score=82.73 Aligned_cols=81 Identities=30% Similarity=0.455 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+...+||+|+.+.+|.+++...|+.||.|..+.++.++.+|.++|||||+|.+.+.+..++. |++..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356789999999999999999999999999999999999999999999999999999999997 9999999999999876
Q ss_pred CC
Q 018143 184 ET 185 (360)
Q Consensus 184 ~~ 185 (360)
+.
T Consensus 178 r~ 179 (231)
T KOG4209|consen 178 RT 179 (231)
T ss_pred ee
Confidence 53
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.62 E-value=3.3e-08 Score=82.08 Aligned_cols=84 Identities=25% Similarity=0.448 Sum_probs=77.7
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
..+....+||.+.|...++.+.|...|++|-.....++++++.||+++||+||.|.+..++.+|+..|+|..++.+.|.+
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred eecC
Q 018143 181 SLSE 184 (360)
Q Consensus 181 ~~~~ 184 (360)
+.+.
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 6554
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.61 E-value=1.3e-07 Score=81.98 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=70.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
..+.|||+|||.++|.+++.++|++||.|. .|.|..+..|. +|=|.+.|-..+++..|++.|++..|.|++
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 356799999999999999999999999775 47888888888 999999999999999999999999999999
Q ss_pred EeEEee
Q 018143 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|+|...
T Consensus 213 ~rVerA 218 (382)
T KOG1548|consen 213 LRVERA 218 (382)
T ss_pred EEEehh
Confidence 998653
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.58 E-value=8.4e-08 Score=87.91 Aligned_cols=72 Identities=21% Similarity=0.463 Sum_probs=62.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.+|||+|||.+++..+|.++|..||.|+...|.....+. .+||||+|.+..+++.||.+ +-..++|++|.|.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 459999999999999999999999999987776544222 48999999999999999996 5888999999886
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.57 E-value=7.7e-08 Score=79.90 Aligned_cols=134 Identities=11% Similarity=0.258 Sum_probs=90.8
Q ss_pred eeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeee----ecCCCCCCCccccccccceEEEcC
Q 018143 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS----WADPKSTPDHSAAASQVKALYVKN 289 (360)
Q Consensus 214 i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~~~l~V~n 289 (360)
+..-.++++ ..+.-++++|+.|.....-.++-..-+++ .+..+.++.. |.++.. ..-.....+||.+-
T Consensus 126 L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~K--ki~~~~VR~a~gtswedPsl----~ew~~~DfRIfcgd 197 (290)
T KOG0226|consen 126 LVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKK--KIGKPPVRLAAGTSWEDPSL----AEWDEDDFRIFCGD 197 (290)
T ss_pred hhhhhhhhc--CCCccCcccccCcchhhhhhhhccccccc--cccCcceeeccccccCCccc----ccCccccceeeccc
Confidence 333444443 34455677887776655444443332222 2222222221 222221 11123457899999
Q ss_pred CCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 290 IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 290 lp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
|...++++-|...|.+|-.....++++++.+. +|||||.|.++.++.+|+..|||.-++.|.|.++
T Consensus 198 lgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 198 LGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 99999999999999999888777777776554 9999999999999999999999999999888765
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.56 E-value=4.9e-07 Score=62.18 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=47.1
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 283 KALYVKNIPDNTSTEK----IKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~----L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..|+|.|||...+... |++++..|| .|..|. + +.|+|.|.+++.|.+|++.|+|-.+.|++|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---~-----~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---G-----GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T-----T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---C-----CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4699999999998865 566777886 566663 1 67999999999999999999999999999998753
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=5.5e-08 Score=78.96 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=71.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...+||||.|+-..++++-|.++|-.-|+|..|.|+.++.+.-.||||.|.+.-+..-|++.+||..+.|+.+.+.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345799999999999999999999999999999999999888349999999999999999999999999999888763
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.49 E-value=8.1e-07 Score=61.14 Aligned_cols=70 Identities=26% Similarity=0.528 Sum_probs=48.7
Q ss_pred CEEEEcCCCCCCCHHHHH----HhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 107 SEVFIGGLPKDASEEDLR----DLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~----~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
+.|+|.|||.+.....|+ .|+..+| .|..|. .+.|+|.|.+++.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999999888765 4555776 676651 3569999999999999999999999999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++...
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98643
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.42 E-value=6.2e-07 Score=66.61 Aligned_cols=71 Identities=28% Similarity=0.394 Sum_probs=47.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC-----ceeCCeeEeEEee
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-----YEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng-----~~~~G~~l~v~p~ 357 (360)
..|.|.+++..++.++|+..|+.||.|.+|.+..+. ..|||.|.+++.|++|+..+.- ..+.+..+.+..|
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 468999999999999999999999999999998876 6899999999999999998764 3667777766544
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=3.6e-07 Score=77.76 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
..+.+||+|+.+.+|.+++...|+.||.|..|.|+.++... +|||||+|.+...+..|+. |||..|.|+.+.+.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 45689999999999999999999999999999999988764 9999999999999999999 99999999999987654
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.33 E-value=9e-07 Score=83.61 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=67.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-----CCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-----GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-----~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
+.++.|||+||++.+++..|...|+.||+|.+|+|+-.+. ..+.+|||-|-+..+|.+|+..|+|..+.+..+.+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 4568899999999999999999999999999888764331 12789999999999999999999999999888877
Q ss_pred Eee
Q 018143 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
-|-
T Consensus 252 gWg 254 (877)
T KOG0151|consen 252 GWG 254 (877)
T ss_pred ccc
Confidence 553
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.28 E-value=1.7e-06 Score=81.77 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCC---CCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK---ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~---~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
.+..+.|||+||++.+++..|...|..||+|.+++|+--+ ...+.+-+|||.|-+..+|.+|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3467889999999999999999999999999999886321 2234456899999999999999999999999999999
Q ss_pred EeecC
Q 018143 180 CSLSE 184 (360)
Q Consensus 180 v~~~~ 184 (360)
+-|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98874
No 152
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=7.9e-07 Score=73.77 Aligned_cols=67 Identities=21% Similarity=0.435 Sum_probs=61.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+||++||+.+.+.+|..+|..||.|..|.+.. |||||.|.+..+|.-|+..|||..|.|-.+.+.+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEH 69 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeec
Confidence 689999999999999999999999999888754 7999999999999999999999999998866544
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.19 E-value=3.7e-06 Score=72.78 Aligned_cols=90 Identities=21% Similarity=0.409 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCCHHH----H--HHhhccCCCeEEEEEecCCCCCCc-ce--EEEEEecCHHHHHHHHHHhcCCccCC
Q 018143 105 NGSEVFIGGLPKDASEED----L--RDLCEPIGDVFEVRLMKDKESGES-KG--FAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~----l--~~~f~~~G~i~~~~~~~~~~~~~~-~g--~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
...-+||-+||+.+..++ | .++|.+||.|..|.+-+...+..+ .+ -.||.|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345789999999887776 3 369999999998877654322222 12 24999999999999999999999999
Q ss_pred eEEEEeecCCc-cceecCCC
Q 018143 176 KTIRCSLSETK-NRLFIGNV 194 (360)
Q Consensus 176 ~~l~v~~~~~~-~~l~v~nl 194 (360)
|.|+..+...+ .+.|++|+
T Consensus 193 r~lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNA 212 (480)
T ss_pred ceEeeecCchHHHHHHHcCC
Confidence 99999887654 33444443
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.18 E-value=2.3e-07 Score=82.43 Aligned_cols=151 Identities=18% Similarity=0.280 Sum_probs=117.4
Q ss_pred cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeee
Q 018143 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
+.+|++||....+..+|..+|....-....-.++ ..||+||.+.....|.+|+..++++ ..+.|....+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--------k~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--------KSGYAFVDCPDQQWANKAIETLSGK-VELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--------ecceeeccCCchhhhhhhHHhhchh-hhhcCceeeccc
Confidence 4689999999999999999998653212222222 3579999999999999999998764 567888877776
Q ss_pred cCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce
Q 018143 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
..+.. -.++.+-|+|+|...-++.|-.++..||.|..+........ .-..-|+|.+.+.++.|+..|||.+
T Consensus 73 sv~kk--------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e-tavvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 73 SVPKK--------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE-TAVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred hhhHH--------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH-HHHHHHHHHHHHHHHHHHHhhcchH
Confidence 66554 34567999999999999999999999999988765433211 1233578999999999999999999
Q ss_pred eCCeeEeEE
Q 018143 347 IDGKSHLHF 355 (360)
Q Consensus 347 ~~G~~l~v~ 355 (360)
+....+.+-
T Consensus 144 ~en~~~k~~ 152 (584)
T KOG2193|consen 144 LENQHLKVG 152 (584)
T ss_pred hhhhhhhcc
Confidence 987766653
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.13 E-value=7.8e-06 Score=60.75 Aligned_cols=59 Identities=25% Similarity=0.439 Sum_probs=39.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCC
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~ 171 (360)
+.|+|.+++..++.++|+.+|++||.|..|-+.+... .|||.|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999998876432 6999999999999999876544
No 156
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=2e-05 Score=72.91 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=60.7
Q ss_pred cceEEEcCCCCCCC--H----HHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeC-CeeEe
Q 018143 282 VKALYVKNIPDNTS--T----EKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEID-GKSHL 353 (360)
Q Consensus 282 ~~~l~V~nlp~~~t--~----~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~-G~~l~ 353 (360)
..+|+|-|+|---. - .-|.++|+++|+|..+.+|.+..|+ +||.|++|.+..+|..|++.|||+.|+ .++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 46899999983222 2 3456789999999999999888777 999999999999999999999999886 55555
Q ss_pred EE
Q 018143 354 HF 355 (360)
Q Consensus 354 v~ 355 (360)
|+
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 54
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.00 E-value=4.1e-05 Score=55.95 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=50.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-cCCCC--------CCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeE
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVV-MPPGK--------SGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSH 352 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~-i~~~~--------~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l 352 (360)
.+.|.|-+.|... -..|.+.|++||.|.... +.... ........|+|.++.+|.+||.. ||..|.|.-|
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 4568888999885 567788999999998765 11110 01136889999999999999995 9999998644
Q ss_pred -eEEee
Q 018143 353 -LHFPV 357 (360)
Q Consensus 353 -~v~p~ 357 (360)
.|+|+
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 46665
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.99 E-value=6.6e-06 Score=72.24 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=68.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
....+|||.+||..++..+|..+|.++|.|. .|.|..++.+. ||-|.|.|.++..|+.|+..++++.|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4457899999999999999999999999876 25566666554 8999999999999999999999999999
Q ss_pred eeEeEEee
Q 018143 350 KSHLHFPV 357 (360)
Q Consensus 350 ~~l~v~p~ 357 (360)
..|.|.++
T Consensus 144 n~ikvs~a 151 (351)
T KOG1995|consen 144 NTIKVSLA 151 (351)
T ss_pred CCchhhhh
Confidence 98888765
No 159
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.96 E-value=4.6e-06 Score=69.63 Aligned_cols=71 Identities=21% Similarity=0.445 Sum_probs=60.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC----------C--CC--eEEEEeCCHHHHHHHHHhhCCce
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----------K--RD--FGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~----------~--kg--~afV~F~~~~~A~~A~~~lng~~ 346 (360)
.+-.||++|||+.+....|+++|+.||.|-+|.+-+.... + .- -|+|+|.+...|.++...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999998654322 1 11 27999999999999999999999
Q ss_pred eCCee
Q 018143 347 IDGKS 351 (360)
Q Consensus 347 ~~G~~ 351 (360)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99986
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.89 E-value=1.2e-05 Score=70.59 Aligned_cols=84 Identities=32% Similarity=0.510 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
....+|||.+||..++...|..+|.++|.|. .|.|.+++.|++.+|-|.|.|.+...|+.|+.-+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3567899999999999999999999999873 36678888999999999999999999999999999999999
Q ss_pred eEEEEeecCCcc
Q 018143 176 KTIRCSLSETKN 187 (360)
Q Consensus 176 ~~l~v~~~~~~~ 187 (360)
.+|.|..+...+
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998886544
No 161
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.87 E-value=3.5e-06 Score=75.10 Aligned_cols=135 Identities=22% Similarity=0.338 Sum_probs=104.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc-cCCeEEEEeecC
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIRCSLSE 184 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~~~ 184 (360)
..+|++||.+.++..+|..+|.... +...-.++ ..|||||.+.+..-|.+|++.++|.. +.|+++.|..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 3589999999999999999997652 11111222 25799999999999999999999865 899999998776
Q ss_pred C----ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhcc
Q 018143 185 T----KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (360)
Q Consensus 185 ~----~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~ 253 (360)
+ .+.+-++|+|....++-|..+..+||. +..|..+.. ..-.-..-|+|.+.+.+..|+..+++.
T Consensus 75 ~kkqrsrk~Qirnippql~wevld~Ll~qyg~-ve~~eqvnt----~~etavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 75 PKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT-VENCEQVNT----DSETAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred hHHHHhhhhhHhcCCHHHHHHHHHHHHhccCC-HhHhhhhcc----chHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 5 467999999999999999999999998 888866432 111122345777888888888877654
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.82 E-value=6.5e-05 Score=48.22 Aligned_cols=52 Identities=23% Similarity=0.496 Sum_probs=43.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHH
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (360)
+.|.|.+.|....+ .+...|..||.|..+.++... ..++|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 56889999977754 555588899999999998444 68999999999999985
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.80 E-value=3.3e-05 Score=69.23 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=56.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCC---CC---C---------CCCeEEEEeCCHHHHHHHHHhhCC
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG---KS---G---------KRDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~---~~---~---------~kg~afV~F~~~~~A~~A~~~lng 344 (360)
-++++|.+.|||.+-..+.|.+||+.||.|..|+|+.. .. + .+-+|+|+|.+...|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46899999999999999999999999999999999765 11 0 145789999999999999998864
Q ss_pred c
Q 018143 345 Y 345 (360)
Q Consensus 345 ~ 345 (360)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 164
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.72 E-value=5e-05 Score=67.25 Aligned_cols=75 Identities=13% Similarity=0.246 Sum_probs=65.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-----CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-----RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-----kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..|.|.||.+++|.+.++.+|+..|.|..+.|++..... .-.|||.|.+..++..|.. |.++.|=++.|.|.|+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 389999999999999999999999999999887754322 4579999999999998877 8888999999999997
Q ss_pred e
Q 018143 358 F 358 (360)
Q Consensus 358 ~ 358 (360)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 4
No 165
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.69 E-value=2.1e-05 Score=66.00 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=54.3
Q ss_pred HHHHHHHh-hcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018143 297 EKIKELFQ-RHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 297 ~~L~~~f~-~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
++|...|+ +||.|..+.+..+-.-. .|-+||.|...++|.+|+..|||+.|.|++|++.-+.|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 46666666 89999999887665544 78899999999999999999999999999999887766
No 166
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.65 E-value=7.5e-05 Score=65.14 Aligned_cols=80 Identities=19% Similarity=0.385 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....+||+||-|++|.++|.+.+...| .+..++++.++..|.++|||.|...+....++.+.-|-...|.|+.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345899999999999999999998887 678889999999999999999999999999999999999999998777755
Q ss_pred cC
Q 018143 183 SE 184 (360)
Q Consensus 183 ~~ 184 (360)
+.
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 53
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.65 E-value=0.00013 Score=63.47 Aligned_cols=74 Identities=23% Similarity=0.453 Sum_probs=59.9
Q ss_pred cceEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEcCCCCCCC---CC-eE-EEEeCCHHHHHHHHHhhCCceeCCe
Q 018143 282 VKALYVKNIPDNTSTEKI------KELFQRHGEVTKVVMPPGKSGK---RD-FG-FIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L------~~~f~~~G~v~~v~i~~~~~~~---kg-~a-fV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
.+-+||-+||+.+-.++. .++|++||.|..|.+-+..... .+ +| ||+|.+.++|.+||.+..|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999988877763 4799999999999886654211 23 32 9999999999999999999999999
Q ss_pred eEeEE
Q 018143 351 SHLHF 355 (360)
Q Consensus 351 ~l~v~ 355 (360)
.|+..
T Consensus 194 ~lkat 198 (480)
T COG5175 194 VLKAT 198 (480)
T ss_pred eEeee
Confidence 99764
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.00016 Score=46.33 Aligned_cols=52 Identities=19% Similarity=0.511 Sum_probs=42.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~ 165 (360)
+.|-|.|.|+...+ .+..+|.+||.|..+.+.. ....+||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 57889999988765 5556889999999988862 2447999999999999985
No 169
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.57 E-value=0.00047 Score=53.51 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 297 EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 297 ~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..|.+.|..||.|.=||+..+ .-+|+|.+-.+|.+|+. ++|.+++|+.|.|++
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred HHHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 367788899999988888764 47999999999999999 799999999999986
No 170
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.56 E-value=0.00015 Score=67.72 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=65.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcc-CCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc---CCeE
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKT 177 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~---~g~~ 177 (360)
..+.+..|+|.||-...|.-.|+.|+.. .|.|...+|- +-+..|||.|.+.+.|...+.+|||..| +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD------kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD------KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH------HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456789999999999999999999985 5677777542 2255799999999999999999999987 6789
Q ss_pred EEEeecCCcc
Q 018143 178 IRCSLSETKN 187 (360)
Q Consensus 178 l~v~~~~~~~ 187 (360)
|.+.|.....
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 9998876543
No 171
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00036 Score=64.38 Aligned_cols=64 Identities=31% Similarity=0.440 Sum_probs=59.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhc-cCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHH
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~ 167 (360)
.+.+|||||+||.-++..+|..+|. -||.|..+-|-.|+.-+..+|-|=|.|.+..+-.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4688999999999999999999998 699999999999988789999999999999999999975
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.47 E-value=0.0002 Score=60.08 Aligned_cols=101 Identities=21% Similarity=0.338 Sum_probs=76.5
Q ss_pred HHHHHHHHhccCcccCCCCCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-
Q 018143 243 ADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321 (360)
Q Consensus 243 a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~- 321 (360)
|..|...|.+ ....++.+.+.++.. ..|+|.||+..++.+.|.+.|+.||.|....+..+-.+.
T Consensus 7 ae~ak~eLd~--~~~~~~~lr~rfa~~-------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~ 71 (275)
T KOG0115|consen 7 AEIAKRELDG--RFPKGRSLRVRFAMH-------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP 71 (275)
T ss_pred HHHHHHhcCC--CCCCCCceEEEeecc-------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc
Confidence 3444455543 356788888887754 379999999999999999999999999876555554444
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCC----ceeCCeeEeEEeee
Q 018143 322 RDFGFIHYAERSSALKAVKDTEK----YEIDGKSHLHFPVF 358 (360)
Q Consensus 322 kg~afV~F~~~~~A~~A~~~lng----~~~~G~~l~v~p~~ 358 (360)
.+-++|.|...-.|.+|+..++- ....|+...|.|+-
T Consensus 72 t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 72 TREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred cccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 67899999999999999998852 34567777666653
No 173
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.40 E-value=0.00047 Score=57.97 Aligned_cols=91 Identities=18% Similarity=0.274 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCccCCeEEEEeecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEec
Q 018143 159 EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238 (360)
Q Consensus 159 ~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~ 238 (360)
.-|..|-..|.+....|+.++|.++.. ..|+|.||+..+..+.+.+.|+.||+ |....++-+ ..+++.+-++|.|.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFA 80 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhh
Confidence 346666777899999999999999987 99999999999999999999999998 777766665 35667778899999
Q ss_pred CHHHHHHHHHHHhcc
Q 018143 239 NNACADYSRQKMLNA 253 (360)
Q Consensus 239 ~~~~a~~a~~~~~~~ 253 (360)
....+.+|+...+..
T Consensus 81 ~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 81 KKPNARKAARRCREG 95 (275)
T ss_pred cchhHHHHHHHhccC
Confidence 999999999877543
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00063 Score=63.31 Aligned_cols=77 Identities=31% Similarity=0.404 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCCC--CCHH----HHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccC-CeE
Q 018143 105 NGSEVFIGGLPKD--ASEE----DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKT 177 (360)
Q Consensus 105 ~~~~i~v~nlp~~--~t~~----~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~-g~~ 177 (360)
-...|+|-|+|-- ..-+ -|.++|+++|+|....++.+..+ .++||.|++|.+..+|..|++.|||..|. +++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4678999999853 2222 24578999999999999988874 49999999999999999999999998876 455
Q ss_pred EEEee
Q 018143 178 IRCSL 182 (360)
Q Consensus 178 l~v~~ 182 (360)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66543
No 175
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.32 E-value=0.00062 Score=58.23 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCeeEEEcCCCCCCC---CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 297 EKIKELFQRHGEVTKVVMPPGKSGK---RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 297 ~~L~~~f~~~G~v~~v~i~~~~~~~---kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.++...|.+||.|..|.|.-..+.. ---.||+|...++|.+|+-.|||+.|+||.+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 5678899999999988765443221 223699999999999999999999999998864
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.26 E-value=0.0012 Score=51.25 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=52.7
Q ss_pred CCCCCEEEEcCCCC-----CCCHH----HHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc
Q 018143 103 PPNGSEVFIGGLPK-----DASEE----DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (360)
Q Consensus 103 ~~~~~~i~v~nlp~-----~~t~~----~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 173 (360)
-++..||.|+=+.+ ..-.+ .|.+.|..||.+.-++++.+ .-||.|.+-.+|.+|+. ++|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 34556777766551 12232 56678899999988888864 39999999999999995 899999
Q ss_pred CCeEEEEeecCC
Q 018143 174 KGKTIRCSLSET 185 (360)
Q Consensus 174 ~g~~l~v~~~~~ 185 (360)
+|+.|+|+.-.+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999988654
No 177
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.14 E-value=0.00041 Score=62.43 Aligned_cols=67 Identities=28% Similarity=0.418 Sum_probs=56.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC---CC--CCCc--------ceEEEEEecCHHHHHHHHHHhcCC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD---KE--SGES--------KGFAFVSFRSKEFAKKAIDELHSK 171 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~---~~--~~~~--------~g~a~v~f~~~~~a~~a~~~l~~~ 171 (360)
.+++|.+-|||.+-.-+.|.++|..+|.|..|+|+.- +. .+.. +-+|+|+|.....|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6789999999999888999999999999999999875 22 2222 335999999999999999877543
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.12 E-value=0.0019 Score=47.30 Aligned_cols=78 Identities=10% Similarity=0.203 Sum_probs=51.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe-cCC------CCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeE
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLM-KDK------ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~-~~~------~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~ 177 (360)
..+.|.|-+.|+. ....|..+|++||.|.+..-. ++. ..........|.|.++.+|.+||. .||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567999999988 455888999999999777511 100 001123468999999999999996 5999998865
Q ss_pred EE-EeecC
Q 018143 178 IR-CSLSE 184 (360)
Q Consensus 178 l~-v~~~~ 184 (360)
+. |.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 54 55553
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.98 E-value=0.00075 Score=63.22 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=58.9
Q ss_pred cccccceEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCcee---CCeeEe
Q 018143 278 AASQVKALYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI---DGKSHL 353 (360)
Q Consensus 278 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~-~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~---~G~~l~ 353 (360)
....++.|+|.||-..+|.-.|+.++.+ +|.|...-|-.- |..|||.|.+.+.|.....+|||.+| +++.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 4466899999999999999999999995 666665533222 36799999999999999999999998 455555
Q ss_pred E
Q 018143 354 H 354 (360)
Q Consensus 354 v 354 (360)
+
T Consensus 516 a 516 (718)
T KOG2416|consen 516 A 516 (718)
T ss_pred e
Confidence 4
No 180
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.67 E-value=0.01 Score=41.15 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=41.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng 344 (360)
...+|+ .|..+-..+|.++|+.||.|. |..+.+ .-|||...+.+.|..|+..++-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-----TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-----CcEEEEeecHHHHHHHHHHhcc
Confidence 345555 999999999999999999875 555555 4799999999999999988763
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.61 E-value=0.014 Score=44.87 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=56.0
Q ss_pred cccceEEEcCCCCCCCH-HH---HHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDNTST-EK---IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~-~~---L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.+-.||.|+-|..++.. ++ +.+.++.||+|.+|.+.-. ..|.|.|.+..+|=+|+.++.. ..-|..+++.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 34568999888877754 34 4556788999999988533 4799999999999999998776 5677888776
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
|.
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 64
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.58 E-value=0.0036 Score=51.28 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=46.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcc-CCCe---EEEEEecCCCC-C-CcceEEEEEecCHHHHHHHHHHhcCCccC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEP-IGDV---FEVRLMKDKES-G-ESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~-~G~i---~~~~~~~~~~~-~-~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
....|-||+||+++|++++...+++ ++.. ..+.-.....+ + .....|||.|.+.+++......++|..+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4678999999999999999998888 7766 33331122111 1 12345999999999999999999987763
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.52 E-value=0.014 Score=40.59 Aligned_cols=57 Identities=23% Similarity=0.475 Sum_probs=42.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
-....+|. .|..+...+|.++|++||.|.--.| .+. .|||...+.+.|..++..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-NDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34566676 9999999999999999999854444 332 599999999999999987653
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.48 E-value=0.0013 Score=55.53 Aligned_cols=62 Identities=27% Similarity=0.425 Sum_probs=51.4
Q ss_pred HHHHhhc-cCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 122 DLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 122 ~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+|...|. +||.|..+.+..+.. -...|-+||.|...++|.+|++.||+.-+.|++|...++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3443344 899999997776543 4568899999999999999999999999999999998875
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.44 E-value=0.0085 Score=51.48 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=51.5
Q ss_pred HHHHHhhccCCCeEEEEEecCCCCCCc-ceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 121 EDLRDLCEPIGDVFEVRLMKDKESGES-KGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 121 ~~l~~~f~~~G~i~~~~~~~~~~~~~~-~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
.+++.-+.+||.|..|.|...+.-.-. .---||+|...+.|.+|+-.|||..|+||.++..+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 356778899999999988876532221 2237999999999999999999999999999887654
No 186
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.023 Score=53.45 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=58.9
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhccC----CCeEEEEEecCC----------CCCC---------------------
Q 018143 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKDK----------ESGE--------------------- 146 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~-~t~~~l~~~f~~~----G~i~~~~~~~~~----------~~~~--------------------- 146 (360)
...+++|-|-|+.|+ +...+|.-+|+.| |.|.+|.|+... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 346789999999998 7888999888766 589999887431 1122
Q ss_pred ----------------cceEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 018143 147 ----------------SKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 147 ----------------~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
..-||.|+|.+...|.+.+..|.|..+.....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 12479999999999999999999998864433
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.30 E-value=0.0052 Score=50.35 Aligned_cols=68 Identities=9% Similarity=0.054 Sum_probs=46.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEE--cCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQR-HGEV---TKVV--MPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~-~G~v---~~v~--i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
...|.|++||+++|++++...++. ++.- .++. ........ ..-|||.|.+.+++..-...++|+.|-.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 458999999999999999987776 5554 3333 22222111 3468999999999999999999987753
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.28 E-value=0.027 Score=37.05 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=45.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRH---GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~---G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (360)
..|+|+++. .++..+|+.+|..| ....+|..+.+. .|-|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHcC
Confidence 479999985 58889999999998 135578888775 5999999999999999865
No 189
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.27 E-value=0.037 Score=41.37 Aligned_cols=68 Identities=9% Similarity=0.066 Sum_probs=51.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
+..+.+-..|+-++-..|..+.+.+- .|..++|+++....+-.+.+.|.+..+|..-...+||+.|+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34455555556666667766666654 567888988876667789999999999999999999999863
No 190
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.13 E-value=0.0068 Score=53.28 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=62.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEcCCCC-CCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~--v~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++||+||-..+|+++|.+.+...|- +-.+++.-++ +|+ ||||+|...+..+.++.+..|-.+.|.|..-.|.++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 358999999999999999999887773 3344444333 344 999999999999999999999999999998888776
Q ss_pred e
Q 018143 358 F 358 (360)
Q Consensus 358 ~ 358 (360)
.
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 3
No 191
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.91 E-value=0.044 Score=47.48 Aligned_cols=69 Identities=32% Similarity=0.434 Sum_probs=53.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeE-eEEee
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSH-LHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l-~v~p~ 357 (360)
.=|.|.++|..- -.-|..+|.+||.|........ + .+..|.|.+..+|.+||.. ||+.|+|..+ -|+||
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n--g--NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN--G--NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC--C--ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 346666777554 3467789999999998877733 2 6899999999999999995 9999987654 45664
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.86 E-value=0.029 Score=51.28 Aligned_cols=68 Identities=7% Similarity=0.167 Sum_probs=60.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
++.|+|-.+|..+|-.+|..++..|- .|..++|+++....+-.++|.|.+..+|..-.+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77999999999999999999998764 577899988766667778999999999999999999999874
No 193
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.66 E-value=0.01 Score=56.65 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=62.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+..++||+|+-..+..+-++.++..||.|.++.... |||..|..+..+.+|+..|+-..++|..+.+.+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456999999999999999999999999998887654 899999999999999999999999999888765
No 194
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.64 E-value=0.067 Score=41.17 Aligned_cols=74 Identities=27% Similarity=0.370 Sum_probs=55.5
Q ss_pred CCCCCEEEEcCCCCCCCH-HH---HHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 018143 103 PPNGSEVFIGGLPKDASE-ED---LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~-~~---l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.++-.||.|+=|..++.. ++ |...++.||+|.+|.++ |+. .|.|.|.+..+|-+|+.++.. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Grq--savVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GRQ--SAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CCc--eEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 446678999877766533 33 44567889999999886 444 499999999999999988765 5567777
Q ss_pred EEeecC
Q 018143 179 RCSLSE 184 (360)
Q Consensus 179 ~v~~~~ 184 (360)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 776653
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.56 E-value=0.0066 Score=53.47 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=62.9
Q ss_pred CCEEEEcCCCCCCCHHHHH---HhhccCCCeEEEEEecCCC--CCC-cceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 106 GSEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKE--SGE-SKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~--~~~-~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
..-+||-+||.....+.+. .+|.+||.|..|.+.++.. ++. ...-+||.|...++|..||...+|..+.|+.+.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4568899999887665554 5899999999998887662 111 122389999999999999999999999999987
Q ss_pred EeecCCc
Q 018143 180 CSLSETK 186 (360)
Q Consensus 180 v~~~~~~ 186 (360)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7665543
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.42 E-value=0.079 Score=34.89 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=43.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccC---CCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHh
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPI---GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~---G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l 168 (360)
.+|+|+|+. +++.++|+.+|..| ....+|.-+-+. .|=|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999995 58888999999998 134467776664 3999999999999999754
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.16 E-value=0.25 Score=36.90 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=48.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
..+-+-..|+-++.+.|..+...+- .|..++|+++.. .++-.+.+.|.++..|......+||..++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444445555566666666654 678899988753 356678999999999999999999987753
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.72 E-value=0.11 Score=42.79 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC--CceeCCeeEeEE
Q 018143 296 TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGKSHLHF 355 (360)
Q Consensus 296 ~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~~~G~~l~v~ 355 (360)
...|+.+|..|+.+..+...+.- +-..|.|.+.+.|.+|...|+ +..|.|..+++-
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~y 66 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVY 66 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE
T ss_pred HHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEE
Confidence 47899999999988877665544 458999999999999999999 999999998774
No 199
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.65 E-value=0.03 Score=51.48 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=61.5
Q ss_pred ccceEEEcCCCCCCCH-HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018143 281 QVKALYVKNIPDNTST-EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~-~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
..+.|-+.-.|+.++. .+|-..|.+||.|..|.+.... -.|.|+|.+...|-+|.. ..+..|+||-|.|+|..+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 3456777777777644 7899999999999988876553 468999999999999988 589999999999999865
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.45 E-value=0.028 Score=51.68 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 105 NGSEVFIGGLPKDA-SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nlp~~~-t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+.+.|-+.-.|+.. |-.+|..+|.+||.|..|.+-.. .-.|.|.|.+...|-.|. +.++..|+||.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 45567777777764 56788999999999999988543 235999999999998888 46999999999999998
Q ss_pred CCccceecCCCCCC
Q 018143 184 ETKNRLFIGNVPKN 197 (360)
Q Consensus 184 ~~~~~l~v~nl~~~ 197 (360)
++.. +.|+|.-
T Consensus 444 nps~---~tn~pav 454 (526)
T KOG2135|consen 444 NPSP---VTNIPAV 454 (526)
T ss_pred cCCc---ccCcccC
Confidence 8765 4555443
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.17 E-value=0.12 Score=42.64 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=46.2
Q ss_pred CHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhc--CCccCCeEEEEeecCC
Q 018143 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCSLSET 185 (360)
Q Consensus 119 t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~ 185 (360)
....|+.+|..|+.+..+.+++.. +-..|.|.+.+.|.+|...|+ +..+.|..+++.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 347899999999999888887653 359999999999999999999 8999999999998853
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.04 E-value=0.14 Score=46.94 Aligned_cols=70 Identities=17% Similarity=0.383 Sum_probs=60.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
..++.|.|=.+|..+|..+|..|+..+- .|..++++++.. .++-.+.|.|.+..+|......+||..+..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3488999999999999999999988765 789999999642 344468999999999999999999988764
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.81 E-value=0.1 Score=49.00 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=58.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcc--CCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcC--CccCCeEEE
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (360)
...+.|.|+-||..+-.+.|+.||+. +-++.+|.+-.+.. =||.|.+..+|+.|+..|.. ..|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 46788999999999999999999976 67888998866543 79999999999999988764 457777765
Q ss_pred Ee
Q 018143 180 CS 181 (360)
Q Consensus 180 v~ 181 (360)
.+
T Consensus 246 AR 247 (684)
T KOG2591|consen 246 AR 247 (684)
T ss_pred hh
Confidence 43
No 204
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.78 E-value=0.34 Score=33.37 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHhhcC-----CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 292 DNTSTEKIKELFQRHG-----EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 292 ~~~t~~~L~~~f~~~G-----~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++..+|..++...+ .|-.|.|.. .|+||+-.. +.|..++..|++..+.|++|.|++.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5678889988888765 445677765 489999886 5899999999999999999999874
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.25 E-value=0.049 Score=48.14 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=55.6
Q ss_pred ceEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEcCCCCC--CC---CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018143 283 KALYVKNIPDNTSTEKIK---ELFQRHGEVTKVVMPPGKS--GK---RDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~---~~f~~~G~v~~v~i~~~~~--~~---kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
+-+||-+||..+-.+.+. .+|.+||.|..|.+..+.. .. ..-++|+|...++|.+||...+|..++|+.|.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457788888777555553 5889999999998877652 11 33479999999999999999999999998743
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.21 E-value=0.26 Score=42.85 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=52.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEE-EEeecC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI-RCSLSE 184 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l-~v~~~~ 184 (360)
..=|.|-++|+... .-|..+|.+||.|...... +...+-+|.|.+.-+|.+||. .||+.|+|..+ =|..|.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 45577778887654 3677899999998776553 334479999999999999996 59999887644 344443
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.86 E-value=0.21 Score=47.14 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=55.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC--ceeCCeeEe
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGKSHL 353 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~--~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng--~~~~G~~l~ 353 (360)
..+.+.|+-||.++..+.++-||.. |-+++++.+-.+. -=||+|.+..+|+.|++.|.. ..|.|+.|-
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3467788999999999999999986 7778888775543 259999999999999999874 567787764
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.13 E-value=1.1 Score=42.73 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=60.5
Q ss_pred cccceEEEcCCC-CCCCHHHHHHHHhhc----CCeeEEEcCCCCCC----------------------------------
Q 018143 280 SQVKALYVKNIP-DNTSTEKIKELFQRH----GEVTKVVMPPGKSG---------------------------------- 320 (360)
Q Consensus 280 ~~~~~l~V~nlp-~~~t~~~L~~~f~~~----G~v~~v~i~~~~~~---------------------------------- 320 (360)
..+++|-|-|+. ..+...+|+-+|+.| |.|.+|.|++..-|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 557899999999 677889999999876 58889988643100
Q ss_pred -------------C--CCeEEEEeCCHHHHHHHHHhhCCceeC--CeeEeEEee
Q 018143 321 -------------K--RDFGFIHYAERSSALKAVKDTEKYEID--GKSHLHFPV 357 (360)
Q Consensus 321 -------------~--kg~afV~F~~~~~A~~A~~~lng~~~~--G~~l~v~p~ 357 (360)
+ --||.|+|.+...|.+.+..+.|..|. |..|-+|.+
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0 237999999999999999999999996 555555443
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.53 E-value=1.4 Score=30.33 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=35.2
Q ss_pred CCCHHHHHHhhccCC-----CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 117 DASEEDLRDLCEPIG-----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 117 ~~t~~~l~~~f~~~G-----~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.++..+|..++...+ .|-.+.+..+ |+||+-... .|..++..|++..+.|++++|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477788888776653 5677877644 689987765 788888899999999999999764
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.51 E-value=2 Score=28.77 Aligned_cols=56 Identities=7% Similarity=0.082 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 292 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
..++-.+|+..+.+|+.. .|+ .++. | -||.|.+..+|.+|+...+|+.+.+..|..
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~I~--~d~t---G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-RIR--DDRT---G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc-eEE--ecCC---E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 457788999999999743 333 3442 3 389999999999999999999998877653
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.40 E-value=0.17 Score=48.66 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=62.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
++..++||+|+...+..+-++.++..+|-|.++.... |||..|.....+.+|+..++...++|+.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4677999999999999999999999999998876653 899999999999999999999999998887654
No 212
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=89.76 E-value=0.71 Score=36.73 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=65.2
Q ss_pred CccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCccccccccceEEEcCCCCC-CCHHHHHHHHhhcC
Q 018143 229 NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHG 307 (360)
Q Consensus 229 ~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G 307 (360)
+.++..+.|.+..++.+++.. .+..+.+..+.+..-.+.............-=|.|.|||.. .+++-|+.+.+.+|
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~---~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG---GPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred CCCeEEEEEEeccceeEEEec---ccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 356889999999999877653 45566677666665544433222222222334778999954 68889999999999
Q ss_pred CeeEEEcCCCCCCCCCeEEE
Q 018143 308 EVTKVVMPPGKSGKRDFGFI 327 (360)
Q Consensus 308 ~v~~v~i~~~~~~~kg~afV 327 (360)
.+..+...........||-|
T Consensus 131 ~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 131 EPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred CeEEEEcCCCCcccccEEEE
Confidence 99999887665444445554
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.76 E-value=0.21 Score=49.52 Aligned_cols=72 Identities=31% Similarity=0.422 Sum_probs=59.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc--CCeEEEEeecCC
Q 018143 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--KGKTIRCSLSET 185 (360)
Q Consensus 108 ~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~~ 185 (360)
+..+.|.+-..+...|..+|.+||.|.+++.+++.. .|.|+|.+.+.|..|+.+++|..+ -|-+.+|..++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 344555566778888999999999999999988754 699999999999999999999764 577888887764
No 214
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=89.68 E-value=0.59 Score=48.19 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.1
Q ss_pred CCHHHHHHhhccCC
Q 018143 118 ASEEDLRDLCEPIG 131 (360)
Q Consensus 118 ~t~~~l~~~f~~~G 131 (360)
.|-++|..++..|-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 47788999988775
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.57 E-value=0.45 Score=33.87 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=45.3
Q ss_pred EEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCCC---CCCccccccccceEEEcCCCCCCCHHHHHHHH
Q 018143 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS---TPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303 (360)
Q Consensus 233 ~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f 303 (360)
|.|+|....-|.+.++.- .....+++....+...+... ..-........++|.|+|||..+.++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~-~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKK-KHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCC-EEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 578899998888777652 23445555555554332222 22223334557899999999999999998653
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.53 E-value=0.55 Score=46.67 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=53.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCcee--CCeeEeEE
Q 018143 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI--DGKSHLHF 355 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~--~G~~l~v~ 355 (360)
..+.|.+-..+-.-|.-+|++||.|.++...++- ..|.|.|.+.+.|..|+.+|+|+.+ -|-+.+|.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 4445566677778999999999999998876665 4799999999999999999999865 35555544
No 217
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=86.96 E-value=3.5 Score=42.01 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=25.1
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCCccC
Q 018143 146 ESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 146 ~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
.-+||-||+-.-+.....||+.+-+....
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 45999999999999999999988776665
No 218
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.72 E-value=3.5 Score=27.63 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=42.3
Q ss_pred CCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 117 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
.++-.+|+..++.|+-. . |..++ .| =||.|.+..+|.+|....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999999843 2 22332 22 589999999999999999998887776654
No 219
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=86.62 E-value=22 Score=31.34 Aligned_cols=158 Identities=15% Similarity=0.216 Sum_probs=92.9
Q ss_pred ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC------CCCCCCccEEEEEecCHHHHHHH----HHHHhccCc
Q 018143 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP------QNPSRNRGFSFVLYYNNACADYS----RQKMLNANF 255 (360)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~------~~~~~~~g~~~v~f~~~~~a~~a----~~~~~~~~~ 255 (360)
.+.|.+.|+...++--.+...|-+||+ |+++.++.+. ...........+.|-++..+... ++.++.-..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~p-IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGP-IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCc-eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 467788999988998889999999999 9999998874 11122334567788888777532 233332233
Q ss_pred ccCCCCCeeeecCCCCCC-----C---------------ccccccccceEEEcCCCCCCCHHHHHHH---HhhcC----C
Q 018143 256 KLDGNTPTISWADPKSTP-----D---------------HSAAASQVKALYVKNIPDNTSTEKIKEL---FQRHG----E 308 (360)
Q Consensus 256 ~~~~~~~~v~~~~~~~~~-----~---------------~~~~~~~~~~l~V~nlp~~~t~~~L~~~---f~~~G----~ 308 (360)
.+....+.+.+..-.... . .-.....++.|.|.=-.....++-|.+. +..-+ .
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEE
Confidence 455556655544321110 0 0111123456666433222233322222 22223 2
Q ss_pred eeEEEcCCCCCCC----CCeEEEEeCCHHHHHHHHHhhCC
Q 018143 309 VTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 309 v~~v~i~~~~~~~----kg~afV~F~~~~~A~~A~~~lng 344 (360)
|.+|.|+...... +.||.++|-+...|...+..|..
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 4567666443222 78999999999999999887763
No 220
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.78 E-value=3.3 Score=29.50 Aligned_cols=58 Identities=21% Similarity=0.435 Sum_probs=41.5
Q ss_pred EEEEecCHHHHHHHHHHh-cCCccCCeEEEE---------------eecCCccceecCCCCCCCCHHHHHHHHH
Q 018143 151 AFVSFRSKEFAKKAIDEL-HSKELKGKTIRC---------------SLSETKNRLFIGNVPKNWTEDEFRKVIE 208 (360)
Q Consensus 151 a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v---------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 208 (360)
|.|.|.....|++.++.- +...+++..+.| ....+++++.+.|+|....++.|+...+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999642 122344544444 3344578999999999999998876533
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=80.73 E-value=2.9 Score=36.05 Aligned_cols=36 Identities=22% Similarity=0.514 Sum_probs=28.0
Q ss_pred ccceEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEcCC
Q 018143 281 QVKALYVKNIPDN------------TSTEKIKELFQRHGEVTKVVMPP 316 (360)
Q Consensus 281 ~~~~l~V~nlp~~------------~t~~~L~~~f~~~G~v~~v~i~~ 316 (360)
...||++-+||-. -++.-|+..|..||.|..|.||.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3567888888732 24578999999999999998873
No 222
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=79.91 E-value=4.4 Score=35.51 Aligned_cols=60 Identities=12% Similarity=0.251 Sum_probs=49.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC--------CCC-CCeEEEEeCCHHHHHHHH
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--------SGK-RDFGFIHYAERSSALKAV 339 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~--------~~~-kg~afV~F~~~~~A~~A~ 339 (360)
..++.|.+.|+...++-..+...|-+||+|.+|.+..+. ... .....+.|-+.+.+..-.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 557889999999999999999999999999999998766 111 456799999987765443
No 223
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=79.04 E-value=2.3 Score=38.58 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=5.1
Q ss_pred CCHHHHHHh
Q 018143 118 ASEEDLRDL 126 (360)
Q Consensus 118 ~t~~~l~~~ 126 (360)
+|.+++..+
T Consensus 190 LT~eDF~kI 198 (324)
T PF05285_consen 190 LTPEDFAKI 198 (324)
T ss_pred CCHHHHHHH
Confidence 466666543
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=78.93 E-value=1 Score=34.06 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=28.6
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHH
Q 018143 284 ALYVKNIPDN---------TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333 (360)
Q Consensus 284 ~l~V~nlp~~---------~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~ 333 (360)
++.|-|+|.. ++...|++.|+.|.+++ |+...+..+.+|+++|.|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCCh
Confidence 5677777643 34589999999999875 5555666666899999999753
No 225
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.77 E-value=1.2 Score=40.36 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=45.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~ 166 (360)
-.+.|-|.++|....-++|...|..|| .=..|..+-+. .|+-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 467899999999988889999999987 33455555554 49999999999999995
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.46 E-value=0.77 Score=39.51 Aligned_cols=68 Identities=28% Similarity=0.472 Sum_probs=46.5
Q ss_pred CCEEEEcCCCCC------------CCHHHHHHhhccCCCeEEEEEecC-----CCCCCcce-----E---------EEEE
Q 018143 106 GSEVFIGGLPKD------------ASEEDLRDLCEPIGDVFEVRLMKD-----KESGESKG-----F---------AFVS 154 (360)
Q Consensus 106 ~~~i~v~nlp~~------------~t~~~l~~~f~~~G~i~~~~~~~~-----~~~~~~~g-----~---------a~v~ 154 (360)
..||++.+||-. -++.-|+..|..||.|..|.|+.- .-+|+..| | |||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 357999999843 366789999999999988877542 12344433 3 4566
Q ss_pred ecCHHHHHHHHHHhcCCcc
Q 018143 155 FRSKEFAKKAIDELHSKEL 173 (360)
Q Consensus 155 f~~~~~a~~a~~~l~~~~~ 173 (360)
|.....-..|+..|.|..|
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 7666666777777777654
No 227
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=77.42 E-value=0.32 Score=45.92 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=56.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeE
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~ 177 (360)
.+++|++|++++++-++|..+++.+-.+.++.+.....-.+...++||.|.---...-|+-+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 678999999999999999999999887777766554333445678999998887777777778876665433
No 228
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.99 E-value=7.3 Score=35.61 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=51.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
...|-|.++|...-.++|...|..||.= -.|..+.+ ..||-.|.+...|..||-. .--.|+++||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-----thalaVFss~~~AaeaLt~------kh~~lKiRpLa 457 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-----THALAVFSSVNRAAEALTL------KHDWLKIRPLA 457 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-----ceeEEeecchHHHHHHhhc------cCceEEeeehh
Confidence 4679999999888889999999999743 35666666 4799999999999999883 34456777763
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.63 E-value=5.3 Score=34.74 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=37.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEecCCCCCCcceEEEEEecCHH
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKE 159 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~a~v~f~~~~ 159 (360)
+..+-|+++|||.++...+|+.-+...|.+ .++... ...|-||+.|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 345569999999999999999998887733 333332 23567999997753
No 230
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=74.31 E-value=13 Score=27.58 Aligned_cols=108 Identities=20% Similarity=0.279 Sum_probs=62.3
Q ss_pred cCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc--cCCeEEEEeecCCccce
Q 018143 112 GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRCSLSETKNRL 189 (360)
Q Consensus 112 ~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~~~l 189 (360)
.-||+-++ .|-++|..-|+|.+|..+..-.. ..|+-.++|.. ++|. |++-..+....+
T Consensus 9 qVlPPYTn--KLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV 68 (145)
T TIGR02542 9 QVLPPYTN--KLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTPASV 68 (145)
T ss_pred EecCCccc--hhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCcccE
Confidence 34777664 58899999999988876543211 11222334432 3443 444444433333
Q ss_pred ecC---------CCCCCCCHHHHHHHHHhh---CCceeEEEEeeCCCCCCCCccEEEEEecCHH
Q 018143 190 FIG---------NVPKNWTEDEFRKVIEDV---GPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (360)
Q Consensus 190 ~v~---------nl~~~~~~~~l~~~f~~~---g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~ 241 (360)
++. --|+..|..+++++|+.- .. |..-.+.++ ..+..+...||..|....
T Consensus 69 ~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQG-ITReQV~rd-GLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 69 RIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQG-ITREQVQRD-GLPEGSYRICFRLFNATQ 130 (145)
T ss_pred EEecCCCCCceecCceeeeHHHHHHHHhhhhhhcc-ccHHHHhhc-CCCCCceEEEEEEeccch
Confidence 333 247788999999999853 22 444445555 233345567888886653
No 231
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=74.26 E-value=6 Score=26.70 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=47.1
Q ss_pred HHHHHhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCCcc
Q 018143 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187 (360)
Q Consensus 121 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 187 (360)
++|++-|...| +|..+.-+..+.++.....-||++........++ +=..+.|..+.|.....++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCCC
Confidence 46777788888 7888888877766777778899887776644433 4567889999998876543
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.86 E-value=15 Score=32.06 Aligned_cols=47 Identities=13% Similarity=0.309 Sum_probs=36.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCee-EEEcCCCCCCCCCeEEEEeCCH
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGKRDFGFIHYAER 332 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~kg~afV~F~~~ 332 (360)
.+.|+++|||.++--.+|+..+.+.|.+- ++..- |..|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCc
Confidence 36699999999999999999999988653 33332 2247799999874
No 233
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=72.22 E-value=7.8 Score=35.18 Aligned_cols=56 Identities=27% Similarity=0.340 Sum_probs=46.1
Q ss_pred EEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCCccceecCCCCCCCCHHHHHHHHH
Q 018143 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208 (360)
Q Consensus 151 a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 208 (360)
|||.|.+..+|..|++.+.... ++.+++..|++.+.++=.||........+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998654433 4667999999999999999988888877776544
No 234
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=71.06 E-value=5.1 Score=39.59 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=21.5
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018143 323 DFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 323 g~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
.-.|+.--+.++-.-|+..|-...+.|++.+
T Consensus 622 r~IFcsImsaeDyiDAFEklLkL~LK~~Q~r 652 (822)
T KOG2141|consen 622 RAIFCSIMSAEDYIDAFEKLLKLSLKGKQER 652 (822)
T ss_pred hhheeeeecchHHHHHHHHHHhccCCCcchH
Confidence 3456666777777777777777777776544
No 235
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=67.51 E-value=5.3 Score=39.85 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=8.6
Q ss_pred EEEcCCCCCCCHHHHHHh
Q 018143 109 VFIGGLPKDASEEDLRDL 126 (360)
Q Consensus 109 i~v~nlp~~~t~~~l~~~ 126 (360)
..++.+|-.++.++...+
T Consensus 958 k~~~d~pvFAsaeey~hl 975 (988)
T KOG2038|consen 958 KGLNDSPVFASAEEYAHL 975 (988)
T ss_pred hccccchhhhhHHHHHHH
Confidence 445555544444444443
No 236
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=66.57 E-value=13 Score=24.37 Aligned_cols=18 Identities=11% Similarity=0.466 Sum_probs=14.5
Q ss_pred HHHHHhhccCCCeEEEEE
Q 018143 121 EDLRDLCEPIGDVFEVRL 138 (360)
Q Consensus 121 ~~l~~~f~~~G~i~~~~~ 138 (360)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999865544
No 237
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=66.13 E-value=12 Score=29.62 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=64.8
Q ss_pred CCCHHHHHHhhcc-CCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCCcc--------
Q 018143 117 DASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN-------- 187 (360)
Q Consensus 117 ~~t~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~-------- 187 (360)
..+-..|...+.. .+....+.+..- ..++..+.|.+.+++.+++. .....+.|..+.+..-.+..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccccee
Confidence 3556666654433 232223333321 14679999999999999995 45666778777776544321
Q ss_pred ----ceecCCCCCC-CCHHHHHHHHHhhCCceeEEEE
Q 018143 188 ----RLFIGNVPKN-WTEDEFRKVIEDVGPGVETIEL 219 (360)
Q Consensus 188 ----~l~v~nl~~~-~~~~~l~~~f~~~g~~i~~~~~ 219 (360)
=+.+.+||.. ++.+-++.+.+.+|. +..+..
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~-~i~vD~ 137 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE-PIEVDE 137 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC-eEEEEc
Confidence 1668899998 888999999999998 666654
No 238
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=64.56 E-value=11 Score=25.28 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=45.6
Q ss_pred HHHHHhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCCc
Q 018143 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 121 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
.+|++-|+.+| ++..++-+..+.++.....-+|+......-.. -++=..++|+++.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 36778888888 88888888888777777778888766543333 23556788999998876543
No 239
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=64.03 E-value=7 Score=38.68 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=7.3
Q ss_pred CCCCCCHHHHHHH
Q 018143 290 IPDNTSTEKIKEL 302 (360)
Q Consensus 290 lp~~~t~~~L~~~ 302 (360)
+|..+|.++|...
T Consensus 552 ~~l~vTledll~a 564 (822)
T KOG2141|consen 552 LPLSVTLEDLLHA 564 (822)
T ss_pred ccccccHHHhhCh
Confidence 4555666666544
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=63.30 E-value=30 Score=24.46 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=41.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 018143 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (360)
-++-..+..++..+|++.++. || .|.+|.....+.+. --|||++..-..|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~-KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-EEEEEEeCCCCcHHHHHHhh
Confidence 344456778999999999988 66 56777655444332 35999999988888776543
No 241
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.04 E-value=23 Score=25.01 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=42.4
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHh
Q 018143 109 VFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168 (360)
Q Consensus 109 i~v~nlp~~~t~~~l~~~f~~-~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l 168 (360)
-|.--.+..++..+|+..+.. || .|..|+....+. |.. -|||.+.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~K--KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEK--KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcE--EEEEEeCCCCcHHHHHHhh
Confidence 444456788999999998877 77 788888776652 222 4999999998888776543
No 242
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=61.25 E-value=13 Score=30.18 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=38.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC--C-CCeEEEEeCCHHHHHHHHHh
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~--~-kg~afV~F~~~~~A~~A~~~ 341 (360)
++++.. |......+|.+.-+ |.+..|.+....++ . +|-.||+|.+..+|.+.+..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456655 33334455555555 78888888766554 2 88899999999999987764
No 243
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.14 E-value=18 Score=23.76 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=16.3
Q ss_pred HHHHHHHhhcCCeeEEEcCC
Q 018143 297 EKIKELFQRHGEVTKVVMPP 316 (360)
Q Consensus 297 ~~L~~~f~~~G~v~~v~i~~ 316 (360)
.+||++|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999998666643
No 244
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=61.10 E-value=26 Score=24.26 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=41.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHH
Q 018143 109 VFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (360)
Q Consensus 109 i~v~nlp~~~t~~~l~~~f~~-~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~ 167 (360)
-|+-..+..++..+|+..+.. || .|..|+....+. +.. -|||.+.....|......
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~K--KA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEK--KAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHHh
Confidence 566667889999999998877 77 777887766542 222 499999988888776644
No 245
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=61.07 E-value=11 Score=34.35 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=46.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCC----CCeEEEEeCCHHHHHHHHHhhCCcee
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEI 347 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~----kg~afV~F~~~~~A~~A~~~lng~~~ 347 (360)
..+.|.+||..++...|.+-..+|- .|....+.+...+. .+.|||.|....+...-....+|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4789999999999999987777754 23333443222111 56789999999998877777777765
No 246
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=60.11 E-value=8.5 Score=31.26 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCH-----HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018143 283 KALYVKNIPDNTST-----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 283 ~~l~V~nlp~~~t~-----~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
+++.+.+++..+-. .....+|..|-...-..+.+.. ++..|-|.++..|..|...++++.|.|+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf----rrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF----RRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh----ceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 45677777644432 2334556555544433444333 45678999999999999999999999983
No 247
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.55 E-value=1.7 Score=40.04 Aligned_cols=71 Identities=7% Similarity=0.009 Sum_probs=53.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
...++..+|...+..++.-+|..||.|..+.+-+..+++ +-.+||.-.+ .+|.-+++.+.-..+.|.++++
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~ 76 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRK 76 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhh
Confidence 456788899999999999999999999988877666655 5577887775 4677777766655555555543
No 248
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=59.08 E-value=2 Score=40.77 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=52.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
..++||++|++++++-.+|..+|+.+-.+..+-+.....-+ .-+++|+|+---...-|+-+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 35789999999999999999999998767666554433222 346899999888888888888887654
No 249
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=58.06 E-value=46 Score=23.04 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=40.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018143 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
-|+-.++..+|..+|+..++. || .|..|....-+.+. --|||++..-..|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~-KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE-KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-eEEEEEECCCCcHHHHHHh
Confidence 455667889999999999988 66 56666554443322 2599999988888776554
No 250
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=57.19 E-value=62 Score=22.36 Aligned_cols=63 Identities=8% Similarity=0.122 Sum_probs=43.3
Q ss_pred EEEcCCCCCCCHHHHHHHHh-------hcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018143 285 LYVKNIPDNTSTEKIKELFQ-------RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~-------~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
|..++||..+|.++|..... .+..|..++-.......+.||+..=.+.+...++.+. .|..++
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~d 72 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLPAD 72 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCCcc
Confidence 56688998899999876654 4445766665555444457888887888777777765 465543
No 251
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=57.07 E-value=9.6 Score=30.94 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=54.9
Q ss_pred CCEEEEcCCCCCCCH-----HHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCe-EEE
Q 018143 106 GSEVFIGGLPKDASE-----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TIR 179 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~-----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~-~l~ 179 (360)
.+++++.+++..+-. .....+|.+|.+..-..+++ +.++.-|.|.++..|..|.-.+++..+.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 356777777765321 23456788777665555553 355688899999999999999999999998 888
Q ss_pred EeecCCc
Q 018143 180 CSLSETK 186 (360)
Q Consensus 180 v~~~~~~ 186 (360)
..++++.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 8887764
No 252
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=56.80 E-value=13 Score=33.98 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=48.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEecCCCC--CCcceEEEEEecCHHHHHHHHHHhcCCcc
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~--~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 173 (360)
...+.|++||+..+..+|..-..+|-.- ....+.....+ ....+.|||.|.++.+........+|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4679999999999999999888876532 22223211110 11256799999999998888877787654
No 253
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=56.50 E-value=11 Score=28.53 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=29.2
Q ss_pred EEEEcCCCCC---------CCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCH-HHHHHHH
Q 018143 108 EVFIGGLPKD---------ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK-EFAKKAI 165 (360)
Q Consensus 108 ~i~v~nlp~~---------~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~-~~a~~a~ 165 (360)
++.|-|+|.. .+.+.|++.|+.|.++. ++.+..+ .-..|++.|+|..- ..-..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 3556666543 35578999999999875 5555554 35688999999765 3344444
No 254
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=56.00 E-value=13 Score=37.19 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=7.1
Q ss_pred cCHHHHHHHHHHHh
Q 018143 238 YNNACADYSRQKML 251 (360)
Q Consensus 238 ~~~~~a~~a~~~~~ 251 (360)
-+..++..|+.++.
T Consensus 399 lSA~D~v~al~ALL 412 (622)
T PF02724_consen 399 LSASDVVYALTALL 412 (622)
T ss_pred eeHHHHHHHHHHHh
Confidence 34455555555554
No 255
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=55.42 E-value=21 Score=26.42 Aligned_cols=26 Identities=8% Similarity=0.313 Sum_probs=22.6
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHH
Q 018143 309 VTKVVMPPGKSGKRDFGFIHYAERSS 334 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~ 334 (360)
|..|++.+.+.+..|.|...|.++..
T Consensus 12 ip~VrLtRsrdg~~g~a~f~F~~p~a 37 (109)
T TIGR03047 12 IPDVRLTRSRDGGTGTALFRFENPKA 37 (109)
T ss_pred CCceEEEEccCCCceEEEEEECCchh
Confidence 67889999998889999999999855
No 256
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=54.92 E-value=9 Score=38.26 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=7.2
Q ss_pred ecCHHHHHHHHHHHh
Q 018143 237 YYNNACADYSRQKML 251 (360)
Q Consensus 237 f~~~~~a~~a~~~~~ 251 (360)
|...-+|..+...+.
T Consensus 395 y~~~lSA~D~v~al~ 409 (622)
T PF02724_consen 395 YRGKLSASDVVYALT 409 (622)
T ss_pred CCCceeHHHHHHHHH
Confidence 344445555555443
No 257
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=54.28 E-value=14 Score=27.42 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=22.7
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHH
Q 018143 309 VTKVVMPPGKSGKRDFGFIHYAERSS 334 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~ 334 (360)
|..|++.+.+.+..|.|...|.++..
T Consensus 15 ip~VrLtRsrdg~~g~a~f~F~~p~a 40 (113)
T CHL00128 15 IPDVRLTRSRDGSTGTATFRFKNPNI 40 (113)
T ss_pred CCceEEEEccCCCceEEEEEECCchh
Confidence 67889999998889999999999855
No 258
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=53.89 E-value=23 Score=33.71 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=14.6
Q ss_pred CHHHHHHHHHhhCCceeCCeeEe
Q 018143 331 ERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 331 ~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
+.+++++|-..+....|.|++|+
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI~ 430 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKIV 430 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCccc
Confidence 45666666666666666776664
No 259
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=53.79 E-value=11 Score=34.35 Aligned_cols=6 Identities=0% Similarity=0.064 Sum_probs=2.2
Q ss_pred CCHHHH
Q 018143 198 WTEDEF 203 (360)
Q Consensus 198 ~~~~~l 203 (360)
++..+|
T Consensus 231 v~~~dI 236 (324)
T PF05285_consen 231 VDPSDI 236 (324)
T ss_pred CCHHHH
Confidence 333333
No 260
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=51.69 E-value=22 Score=26.32 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=30.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHH
Q 018143 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~ 337 (360)
.=|+.+++..+ |..|++.+.+.|..|.|+..|.++..-..
T Consensus 10 IQF~~Gi~E~~--------------vp~VrLtRsrdG~tG~A~f~F~~p~~l~~ 49 (113)
T PRK13610 10 IQFVKGENEKD--------------QPEIRLFRNLDGKKGKAVYKFYKPKTITL 49 (113)
T ss_pred EEEecCCCCCc--------------CCceEEEEccCCCccEEEEEECCchhccc
Confidence 44667776554 67889999998889999999999865433
No 261
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=50.75 E-value=20 Score=29.15 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=40.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCC-CCcceEEEEEecCHHHHHHHHHH
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDE 167 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~a~v~f~~~~~a~~a~~~ 167 (360)
.+++|.. |.+..-++|..+-+ |.+..+.+.+.... ...+|..||.|.+.+.|.+++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4567766 33444444545444 78888888765432 25688999999999999998864
No 262
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=50.71 E-value=56 Score=20.44 Aligned_cols=42 Identities=10% Similarity=0.308 Sum_probs=29.9
Q ss_pred HHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHH
Q 018143 297 EKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 297 ~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (360)
..+...|.+.| .|.++...... +.++...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 56667788776 67777765543 33577788888988888776
No 263
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=50.50 E-value=45 Score=30.82 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=29.6
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHhhccC----CCeEEEEEecC
Q 018143 104 PNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKD 141 (360)
Q Consensus 104 ~~~~~i~v~nlp~~-~t~~~l~~~f~~~----G~i~~~~~~~~ 141 (360)
..+.+|-|-||.|+ +...+|...|+.| |+|..|.|...
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 35678999999997 7778888887765 47888888654
No 264
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=50.12 E-value=25 Score=33.14 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=8.4
Q ss_pred cCCccCCeEEEEee
Q 018143 169 HSKELKGKTIRCSL 182 (360)
Q Consensus 169 ~~~~~~g~~l~v~~ 182 (360)
|.-.+.||+|.|-.
T Consensus 422 nSGSMrGRpItvAa 435 (620)
T COG4547 422 NSGSMRGRPITVAA 435 (620)
T ss_pred cCCCcCCcceehhH
Confidence 34456777777643
No 265
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.78 E-value=3.1 Score=38.37 Aligned_cols=78 Identities=6% Similarity=-0.120 Sum_probs=58.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.+.|+..||..+++.++.-+|..||.|..+-+.+.-+.|...-.+||.-.+ ..+..|+..+.-..+.|..+++..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456788999999999999999999999888877766556666677776543 456666666666667777777776654
No 266
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=49.33 E-value=25 Score=23.92 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=23.3
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018143 323 DFGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 323 g~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
.+++|.|.+..+|.+|-+.|...-+.++
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4789999999999999998887666443
No 267
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=46.96 E-value=9.9 Score=34.89 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=51.8
Q ss_pred CCCEEEEcCCCCCCCHH--------HHHHhhcc--CCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q 018143 105 NGSEVFIGGLPKDASEE--------DLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~--------~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~ 166 (360)
..+.+|+.+.+...+.. ++..+|.. .+++..++..++.....++|..|++|.....|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45678888887765555 89999998 6788999998888778889999999999999998873
No 268
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=46.04 E-value=69 Score=29.65 Aligned_cols=70 Identities=19% Similarity=0.376 Sum_probs=52.0
Q ss_pred cccceEEEcCCC-CCCCHHHHHHHHhhc----CCeeEEEcCCCCC-----------------------------------
Q 018143 280 SQVKALYVKNIP-DNTSTEKIKELFQRH----GEVTKVVMPPGKS----------------------------------- 319 (360)
Q Consensus 280 ~~~~~l~V~nlp-~~~t~~~L~~~f~~~----G~v~~v~i~~~~~----------------------------------- 319 (360)
.+++.|-|-|+. ..+...+|+.+|+.| |+|..|.|.+..-
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 557789999998 567778999999875 5777777743200
Q ss_pred -------------CCCC-------------------eEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 320 -------------GKRD-------------------FGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 320 -------------~~kg-------------------~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
+-+| ||.|++.+...+...+..+.|..+..
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYEN 285 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccc
Confidence 0022 68999999999999999999987753
No 269
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.26 E-value=15 Score=34.27 Aligned_cols=16 Identities=6% Similarity=-0.172 Sum_probs=8.4
Q ss_pred EEEcCCCCCCCHHHHH
Q 018143 285 LYVKNIPDNTSTEKIK 300 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~ 300 (360)
+-+.-.|..+...++.
T Consensus 384 ~~~~ldpeifDD~DFY 399 (483)
T KOG2773|consen 384 SPESLDPEIFDDSDFY 399 (483)
T ss_pred cccccCccccCcHHHH
Confidence 3334456666666553
No 270
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=44.33 E-value=45 Score=32.78 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=7.4
Q ss_pred CCEEEEcCCCCCCC
Q 018143 106 GSEVFIGGLPKDAS 119 (360)
Q Consensus 106 ~~~i~v~nlp~~~t 119 (360)
.-+||-.-...-+.
T Consensus 295 ~Y~vfTt~fDe~i~ 308 (600)
T TIGR01651 295 DYKVFTTAFDETVD 308 (600)
T ss_pred cceecchhhhhhcc
Confidence 45566655554443
No 271
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=42.21 E-value=62 Score=24.20 Aligned_cols=43 Identities=12% Similarity=0.265 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHhh---cCCeeEEEcCCC--CCCCCCeEEEEeCCH
Q 018143 290 IPDNTSTEKIKELFQR---HGEVTKVVMPPG--KSGKRDFGFIHYAER 332 (360)
Q Consensus 290 lp~~~t~~~L~~~f~~---~G~v~~v~i~~~--~~~~kg~afV~F~~~ 332 (360)
-|+.+|..+|+++|+. |-.|.+=.+.++ ..|.-..||.-|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 5789999999999985 555553222222 122224688888765
No 272
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=41.26 E-value=25 Score=29.89 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=29.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEc
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i 314 (360)
....+||+-|+|...|++-|..+.+.+|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34579999999999999999999999997765544
No 273
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=39.95 E-value=30 Score=33.21 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=31.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 322 kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..++++.|.+...+.+|+..++|..+.|..+++.+
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~ 97 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQL 97 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhh
Confidence 57999999999999999999999999888776643
No 274
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=38.92 E-value=22 Score=30.23 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEE
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~ 137 (360)
......++|+-|+|..+|++.|..+.++.|.+..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 344677899999999999999999999998654443
No 275
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.74 E-value=33 Score=31.62 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=9.1
Q ss_pred EEcCCCCCCCHHHHHHhhc
Q 018143 110 FIGGLPKDASEEDLRDLCE 128 (360)
Q Consensus 110 ~v~nlp~~~t~~~l~~~f~ 128 (360)
|--.||.--+..+|...|-
T Consensus 354 fAq~lp~i~~p~d~y~~F~ 372 (514)
T KOG3130|consen 354 FAQELPTIRTPADIYRAFV 372 (514)
T ss_pred ccccCCccCCcchhhhhhe
Confidence 4444554445555544433
No 276
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.47 E-value=1.2e+02 Score=19.83 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=30.8
Q ss_pred CHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeC--CHHHHHHHHHhhCCceeC
Q 018143 295 STEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYA--ERSSALKAVKDTEKYEID 348 (360)
Q Consensus 295 t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~--~~~~A~~A~~~lng~~~~ 348 (360)
.-..|.++|..+| .|.++..........+..+|.+. +.+.+.++|.. +|+.+-
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~v~ 69 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR-AGYEVL 69 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH-CCCeee
Confidence 3457788888887 56677654432222334455554 55566676664 455443
No 277
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.04 E-value=71 Score=22.42 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=23.7
Q ss_pred CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcC
Q 018143 132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 132 ~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
.|.++..+ ...+||-||+=.++.++..|+..+.+
T Consensus 33 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAP-----DSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE------TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEe-----CCCceEEEEEeCCHHHHHHHHhcccc
Confidence 45555554 34699999999999999999976654
No 278
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.96 E-value=1.3e+02 Score=19.21 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=40.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCH----HHHHHHHHh
Q 018143 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER----SSALKAVKD 341 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~----~~A~~A~~~ 341 (360)
|+.|.|+.-.--...|.+.+...-.|..+.+-... +.+-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~----~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET----KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT----TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC----CEEEEEEecCCCCHHHHHHHHHH
Confidence 46777777666778899999998889988887665 6789999854 455555554
No 279
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=33.82 E-value=61 Score=30.68 Aligned_cols=10 Identities=0% Similarity=0.378 Sum_probs=5.2
Q ss_pred HHHHHHHHhh
Q 018143 296 TEKIKELFQR 305 (360)
Q Consensus 296 ~~~L~~~f~~ 305 (360)
+..|+.+...
T Consensus 563 erHLRaViee 572 (620)
T COG4547 563 ERHLRAVIEE 572 (620)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 280
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=33.25 E-value=57 Score=24.25 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.0
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHHH
Q 018143 309 VTKVVMPPGKSGKRDFGFIHYAERSSA 335 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~A 335 (360)
|..|++.+.+.+..|.|...|.++..-
T Consensus 14 vp~VrLtRsrdg~~g~a~f~F~~p~~l 40 (111)
T PLN00039 14 VPDVRLTRSRDGTNGTAIFVFDQPSVF 40 (111)
T ss_pred CCceEEEEccCCCccEEEEEECCchhh
Confidence 678899888888889999999998653
No 281
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=33.02 E-value=1.2e+02 Score=21.16 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=25.7
Q ss_pred CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCcee
Q 018143 308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347 (360)
Q Consensus 308 ~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~ 347 (360)
.|.++..+.+ .+||-||+=.+..++..|+..+.+...
T Consensus 33 ~I~Si~~~~~---lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDS---LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TT---STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCC---CceEEEEEeCCHHHHHHHHhcccceee
Confidence 4666666654 359999999999999999998776443
No 282
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=32.66 E-value=1.5e+02 Score=22.71 Aligned_cols=36 Identities=14% Similarity=-0.011 Sum_probs=26.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018143 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 322 kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
+|+--+.=.....+.+|+..+. .++|+++.+.|+=|
T Consensus 67 ~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv~I~~lgv 102 (124)
T COG1369 67 TGIVRCRREYVDLVRAALMLAR--EVNGKRVIIVVLGV 102 (124)
T ss_pred ceEEEEechhHHHHHHHHHHHH--HhCCceEEEEEeec
Confidence 3444444456677888887665 79999999998754
No 283
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=32.26 E-value=1.4e+02 Score=19.33 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce
Q 018143 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 296 ~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
-.+|..+|.+.| .|.++....... +++..+.+.+.+.|.++|.. +|+.
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSE--FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 367888888877 677777644332 35666667777777777775 4443
No 284
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.21 E-value=1.4e+02 Score=19.00 Aligned_cols=48 Identities=10% Similarity=0.235 Sum_probs=28.1
Q ss_pred HHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc
Q 018143 297 EKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 297 ~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
.+|..+|..+| .|.++..............+...+.+.+.++++. +|+
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~-~G~ 62 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE-RGV 62 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH-CCc
Confidence 56777788876 5666654333222223445666677777777764 444
No 285
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.75 E-value=1.1e+02 Score=29.71 Aligned_cols=59 Identities=10% Similarity=0.176 Sum_probs=43.8
Q ss_pred EEcCCCCCC---CHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeE
Q 018143 286 YVKNIPDNT---STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSH 352 (360)
Q Consensus 286 ~V~nlp~~~---t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l 352 (360)
+|+||+.-. ....|..+-.+||+|-.+++-... .|.-.+.+.|..|+.. ++..|.||..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~-------~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVP-------VVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCce-------EEEECCHHHHHHHHHh-CCccccCCCC
Confidence 566665222 335666777789999988885432 7777899999999995 7889988875
No 286
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=31.56 E-value=82 Score=30.00 Aligned_cols=7 Identities=43% Similarity=0.605 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 018143 159 EFAKKAI 165 (360)
Q Consensus 159 ~~a~~a~ 165 (360)
+-|.++|
T Consensus 321 QrAR~~i 327 (432)
T PF09073_consen 321 QRARRAI 327 (432)
T ss_pred HHHHHHH
Confidence 3344443
No 287
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.09 E-value=35 Score=32.06 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=3.9
Q ss_pred CCeeEeEE
Q 018143 348 DGKSHLHF 355 (360)
Q Consensus 348 ~G~~l~v~ 355 (360)
.||+|+.-
T Consensus 445 KgRKLrY~ 452 (483)
T KOG2773|consen 445 KGRKLRYH 452 (483)
T ss_pred cCceeeee
Confidence 35555543
No 288
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.98 E-value=40 Score=29.17 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=4.1
Q ss_pred CCCCHHHHH
Q 018143 196 KNWTEDEFR 204 (360)
Q Consensus 196 ~~~~~~~l~ 204 (360)
..+|+++|.
T Consensus 183 ~~lTQeElL 191 (240)
T PF05764_consen 183 RPLTQEELL 191 (240)
T ss_pred CCCCHHHHH
Confidence 334554444
No 289
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=30.95 E-value=64 Score=23.31 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=17.4
Q ss_pred ceEEEEEecCHHHHHHHHHHh
Q 018143 148 KGFAFVSFRSKEFAKKAIDEL 168 (360)
Q Consensus 148 ~g~a~v~f~~~~~a~~a~~~l 168 (360)
--|.|++|.+.+.+.+|...+
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 347999999999999888653
No 290
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=30.93 E-value=54 Score=24.47 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=23.0
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHHH
Q 018143 309 VTKVVMPPGKSGKRDFGFIHYAERSSA 335 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~A 335 (360)
|..|++.+.+.+..|.|...|.++..-
T Consensus 17 ip~VrLtRsrdg~~g~a~f~F~~p~al 43 (113)
T PRK13612 17 VPDIRLTRSRDGRTGQATFYFEQPQAL 43 (113)
T ss_pred CCceEEEEccCCCeeEEEEEECCcccc
Confidence 678899888888889999999998653
No 291
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=30.14 E-value=36 Score=35.47 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=5.4
Q ss_pred CEEEEcCCCC
Q 018143 107 SEVFIGGLPK 116 (360)
Q Consensus 107 ~~i~v~nlp~ 116 (360)
+.+||-.+|.
T Consensus 905 ~~~wvl~~Pi 914 (1096)
T TIGR00927 905 QAIYLFLLPI 914 (1096)
T ss_pred eeEeEEecch
Confidence 4456655554
No 292
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=28.77 E-value=21 Score=32.31 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc
Q 018143 296 TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 296 ~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
...|++.+.+.|.|..-.+.+--+ .|.|||-.-..+++.++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFN--mGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFN--MGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhc--CccceEEEEcHHHHHHHHHHHHhc
Confidence 467888888999887544433222 278999999999999999998864
No 293
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=26.88 E-value=83 Score=31.01 Aligned_cols=11 Identities=0% Similarity=0.277 Sum_probs=6.0
Q ss_pred HHHHHHHHhhc
Q 018143 296 TEKIKELFQRH 306 (360)
Q Consensus 296 ~~~L~~~f~~~ 306 (360)
+.+|+.+...+
T Consensus 542 ~~hLr~vi~~~ 552 (600)
T TIGR01651 542 ERHLRAVIEEI 552 (600)
T ss_pred HHHHHHHHHHH
Confidence 45566665543
No 294
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=25.87 E-value=1.4e+02 Score=22.70 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=23.4
Q ss_pred CeEEEEeC--CHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018143 323 DFGFIHYA--ERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 323 g~afV~F~--~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
+.|.|.-. ..+.+..||..++ .++|+++.++++.|
T Consensus 66 ~~gIlRc~R~~~~~v~aAL~li~--~i~~~~v~ir~l~v 102 (120)
T PRK03717 66 QTGIVRCDRKHVEELRFALTLVT--EINGSKAIIRTLGV 102 (120)
T ss_pred CEEEEEcCchhHHHHHHHHHHHH--hCCCeeEEEEEeec
Confidence 56766654 3445666666555 47889999998876
No 295
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=25.24 E-value=1.7e+02 Score=20.97 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=25.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-CeEEEEEecCC
Q 018143 109 VFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDK 142 (360)
Q Consensus 109 i~v~nlp~~~t~~~l~~~f~~-~G-~i~~~~~~~~~ 142 (360)
.++-..+..+|..+|+..+.. || .|..|+.+..+
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~ 57 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVK 57 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeC
Confidence 455557789999999999977 77 77777765543
No 296
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.53 E-value=2.3e+02 Score=19.07 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=34.8
Q ss_pred eEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC-CccceecCCCCCCCCHHHHHHHHHhhC
Q 018143 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE-TKNRLFIGNVPKNWTEDEFRKVIEDVG 211 (360)
Q Consensus 149 g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~-~~~~l~v~nl~~~~~~~~l~~~f~~~g 211 (360)
.+.+|.|.+...|.+|-+.|....+.++-+-+-..- ....+.+.- + .-+.+.+..+++..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~-~-~~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRF-E-PEDLEKIKEILEENG 63 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEE-C-hhhHHHHHHHHHHCC
Confidence 368999999999999998887766544433221110 111121111 1 135566666766665
No 297
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=24.40 E-value=1.5e+02 Score=29.24 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=8.6
Q ss_pred CEEEEcCCCCCCC
Q 018143 107 SEVFIGGLPKDAS 119 (360)
Q Consensus 107 ~~i~v~nlp~~~t 119 (360)
.+=.|+|||-.+-
T Consensus 119 ~rntvgnipl~wY 131 (733)
T KOG0650|consen 119 TRNTVGNIPLKWY 131 (733)
T ss_pred hhcccCCcccccc
Confidence 4556888887543
No 298
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=24.38 E-value=2e+02 Score=18.28 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCH
Q 018143 294 TSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAER 332 (360)
Q Consensus 294 ~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~ 332 (360)
-.-.+|..+|+++| .|.++..........+...+.+.+.
T Consensus 11 g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~ 50 (71)
T cd04879 11 GVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP 50 (71)
T ss_pred CHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC
Confidence 34567888999887 6777766544312223445555553
No 299
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=24.14 E-value=2.7e+02 Score=19.82 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC
Q 018143 297 EKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 297 ~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln 343 (360)
+.++++++.+| .+.++.+..+... ....+++.+.+.|.++...+.
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~yD--~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGEYD--FVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCCCC--EEEEEEcCCHHHHHHHHHHHH
Confidence 56777888875 7888888777643 567889999998887776554
No 300
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.70 E-value=38 Score=31.27 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=43.2
Q ss_pred ceEEEcCCCCCCCH--------HHHHHHHhh--cCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHH
Q 018143 283 KALYVKNIPDNTST--------EKIKELFQR--HGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 283 ~~l~V~nlp~~~t~--------~~L~~~f~~--~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~ 340 (360)
+.+|+.+.+...+. +++...|.+ +|++..|++.++.. .. +|..|++|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 56677776644444 489999999 56777777776652 22 7889999999999999875
No 301
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.17 E-value=2.8e+02 Score=21.90 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=37.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHH
Q 018143 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (360)
-++-.++...+-.+|++.++. || .|..|.......+. --|||.+..-.+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~-KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL-KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc-eEEEEEECCCCcHHHHHH
Confidence 455557778999999999988 65 56667655444433 259999987766654433
No 302
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.73 E-value=1.7e+02 Score=20.69 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCCCcceEEEEEecC
Q 018143 132 DVFEVRLMKDKESGESKGFAFVSFRS 157 (360)
Q Consensus 132 ~i~~~~~~~~~~~~~~~g~a~v~f~~ 157 (360)
.|..+++..-...|+.+|||-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36778887766669999999998765
No 303
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=22.63 E-value=2e+02 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhcc-CC-CeEEEEEecCC
Q 018143 108 EVFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDK 142 (360)
Q Consensus 108 ~i~v~nlp~~~t~~~l~~~f~~-~G-~i~~~~~~~~~ 142 (360)
..|+-..++.++..+|+..|.. || .|..|+.+..+
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~ 59 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVD 59 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecC
Confidence 3577778899999999999977 77 77788776543
No 304
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=22.10 E-value=2.6e+02 Score=18.93 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcC-CeeEEEcCCCCCCCCC-eEEEEeCC---HHHHHHHHHhhCC
Q 018143 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRD-FGFIHYAE---RSSALKAVKDTEK 344 (360)
Q Consensus 296 ~~~L~~~f~~~G-~v~~v~i~~~~~~~kg-~afV~F~~---~~~A~~A~~~lng 344 (360)
-..+.+.|.++| .|.++...+....... .-||.+.. ......++..|..
T Consensus 15 L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 15 LYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 467788898886 5677765544333222 34566663 5666777777665
No 305
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.40 E-value=2e+02 Score=26.70 Aligned_cols=75 Identities=19% Similarity=0.371 Sum_probs=38.0
Q ss_pred cceEEEcCCCCCCC--HHHHHHHHh-----hcC--------CeeEEEc-CCCC--CCCCC-eEEEEeC---CHHHHHHHH
Q 018143 282 VKALYVKNIPDNTS--TEKIKELFQ-----RHG--------EVTKVVM-PPGK--SGKRD-FGFIHYA---ERSSALKAV 339 (360)
Q Consensus 282 ~~~l~V~nlp~~~t--~~~L~~~f~-----~~G--------~v~~v~i-~~~~--~~~kg-~afV~F~---~~~~A~~A~ 339 (360)
.+.|.|.+||.... ...+..+|. .|+ .|.+++- +... .+.+. --+|.|. +.+...+|-
T Consensus 190 RnNiRIiGiPEg~e~~~k~~~~~l~~ii~e~~p~L~~e~~i~IerahR~~~~~~~~~~~PR~iIvKfl~f~~KE~IL~aA 269 (370)
T PF02994_consen 190 RNNIRIIGIPEGEEEEGKGPENFLEEIIPENFPNLPKETDIEIERAHRSPRPKPPKGQRPRPIIVKFLRFQDKEKILKAA 269 (370)
T ss_dssp TTEEEEES----TT--HHHHHHHHHHHHHHH-CHHHHHT---EEEEEEESSSS-TTSSS--EEEEEESSHHHHHHHHHHH
T ss_pred CCceeEEecCCCccccccCHHHHHHHHHHHhCcCcccccchhhhhhhcccCCCCCccCCcCeEEEEecCcccHHHHHHHH
Confidence 45799999998754 234443332 232 3555542 2221 12222 2344455 555556665
Q ss_pred HhhCCceeCCeeEeEEe
Q 018143 340 KDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 340 ~~lng~~~~G~~l~v~p 356 (360)
.......|.|++|.+.|
T Consensus 270 R~~~~~~~~g~~I~if~ 286 (370)
T PF02994_consen 270 REKGQLTYKGKRIRIFP 286 (370)
T ss_dssp HHHS-EEETTEEEEEEC
T ss_pred HhcCceeeCCCceEEeC
Confidence 65667899999999987
No 306
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=21.04 E-value=63 Score=21.30 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=10.1
Q ss_pred HHHHHHHHhhcCCeeEE
Q 018143 296 TEKIKELFQRHGEVTKV 312 (360)
Q Consensus 296 ~~~L~~~f~~~G~v~~v 312 (360)
-=++.+++.+||.+..+
T Consensus 4 lyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 4 LYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp HHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHCCEEEEe
Confidence 34789999999976644
No 307
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.74 E-value=2.4e+02 Score=17.93 Aligned_cols=47 Identities=9% Similarity=0.224 Sum_probs=24.7
Q ss_pred CHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 018143 295 STEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 295 t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (360)
.-.+|..+|+.+| .|.++.......+..++..+...+. ....++..|
T Consensus 12 ~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~l 59 (71)
T cd04903 12 AIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-IDEEVIEEI 59 (71)
T ss_pred hHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-CCHHHHHHH
Confidence 4567888888886 5666665432112123344555543 333444443
No 308
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=20.43 E-value=1.2e+02 Score=19.81 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=13.2
Q ss_pred EEEecCCCCCCcceEEEEEecC
Q 018143 136 VRLMKDKESGESKGFAFVSFRS 157 (360)
Q Consensus 136 ~~~~~~~~~~~~~g~a~v~f~~ 157 (360)
++++.++. ..+.|+|||.|.+
T Consensus 20 arllLnrR-ps~~G~~WiKyED 40 (60)
T PF06613_consen 20 ARLLLNRR-PSSEGLAWIKYED 40 (60)
T ss_dssp EEE-TTB---SSTTEEEEEETT
T ss_pred hhhhhccC-CCcCCeEEEEEcc
Confidence 44555543 4678999999976
No 309
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=20.29 E-value=2.9e+02 Score=18.70 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=30.4
Q ss_pred HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC
Q 018143 297 EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 297 ~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln 343 (360)
..|.+.+..+| +....+.-... .++.|+-+.+...|.++...+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~--G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGG--GPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSS--SSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCC--CCeEEEEECCHHHHHHHHHHHH
Confidence 46777788899 44455533211 2678888889999888888764
No 310
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=20.18 E-value=2e+02 Score=19.18 Aligned_cols=38 Identities=16% Similarity=0.415 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHhh--cCCeeEEEcCCCCCCCCCeE-EEEeCCH
Q 018143 290 IPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGKRDFG-FIHYAER 332 (360)
Q Consensus 290 lp~~~t~~~L~~~f~~--~G~v~~v~i~~~~~~~kg~a-fV~F~~~ 332 (360)
+-..++. +|...+.+ .|.|...++..++ |+| +|+|.+.
T Consensus 12 irDRi~~-~l~~~l~~~~~g~I~~fKmtDG~----giG~vv~~~ng 52 (64)
T PF11061_consen 12 IRDRIPK-ELVDKLGKNPIGTIKGFKMTDGS----GIGVVVEFSNG 52 (64)
T ss_pred hhhhccH-HHHHHhccCCcEEEEEEEEecCC----cEEEEEEecCC
Confidence 3334433 55556666 8999999998887 776 5677653
No 311
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.07 E-value=74 Score=29.43 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=2.7
Q ss_pred CCCCCCH
Q 018143 290 IPDNTST 296 (360)
Q Consensus 290 lp~~~t~ 296 (360)
+|.+|+.
T Consensus 447 ~P~~V~~ 453 (514)
T KOG3130|consen 447 LPLSVTP 453 (514)
T ss_pred CCCcccc
Confidence 3444433
Done!