Query 018143
Match_columns 360
No_of_seqs 277 out of 2382
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 10:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 3.1E-46 1.1E-50 332.9 25.4 240 104-357 20-261 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 5.4E-46 1.8E-50 332.7 26.7 248 100-357 35-288 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.5E-34 5.1E-39 246.2 18.8 165 105-357 14-178 (213)
4 1b7f_A Protein (SXL-lethal pro 100.0 2.7E-33 9.4E-38 229.5 18.4 162 105-356 2-167 (168)
5 3md3_A Nuclear and cytoplasmic 100.0 9.7E-33 3.3E-37 225.7 19.1 162 107-357 1-164 (166)
6 3nmr_A Cugbp ELAV-like family 100.0 3.7E-32 1.3E-36 224.2 18.8 164 105-357 2-174 (175)
7 3tyt_A Heterogeneous nuclear r 100.0 7.3E-31 2.5E-35 221.1 22.3 195 105-357 3-204 (205)
8 1fxl_A Paraneoplastic encephal 100.0 8E-31 2.7E-35 214.4 21.3 158 106-267 2-167 (167)
9 1l3k_A Heterogeneous nuclear r 100.0 3.7E-31 1.3E-35 222.4 17.7 167 102-274 9-187 (196)
10 2qfj_A FBP-interacting repress 100.0 1.4E-30 4.7E-35 222.3 20.6 167 105-275 27-210 (216)
11 3pgw_A U1-A; protein-RNA compl 100.0 6.1E-30 2.1E-34 227.3 24.4 243 103-357 6-280 (282)
12 2g4b_A Splicing factor U2AF 65 100.0 6.8E-31 2.3E-35 216.0 16.5 156 105-357 3-171 (172)
13 1fje_B Nucleolin RBD12, protei 100.0 1.9E-31 6.5E-36 220.0 12.1 163 102-357 9-171 (175)
14 2cjk_A Nuclear polyadenylated 100.0 1E-30 3.5E-35 213.9 15.0 159 105-270 2-166 (167)
15 2yh0_A Splicing factor U2AF 65 100.0 4.5E-30 1.5E-34 216.1 17.8 176 105-357 3-191 (198)
16 1l3k_A Heterogeneous nuclear r 100.0 5.1E-30 1.7E-34 215.4 18.0 168 184-357 11-180 (196)
17 2adc_A Polypyrimidine tract-bi 100.0 3.1E-29 1.1E-33 215.7 20.6 193 102-357 30-225 (229)
18 1fxl_A Paraneoplastic encephal 100.0 2.6E-29 8.7E-34 205.5 18.2 161 185-355 1-165 (167)
19 1qm9_A Polypyrimidine tract-bi 100.0 2.6E-29 8.8E-34 211.5 17.3 190 105-357 2-194 (198)
20 2cjk_A Nuclear polyadenylated 100.0 1.5E-29 5.1E-34 207.0 15.2 160 185-357 2-163 (167)
21 2qfj_A FBP-interacting repress 100.0 4.5E-29 1.5E-33 212.9 17.5 168 186-357 28-202 (216)
22 3sde_A Paraspeckle component 1 100.0 3.4E-28 1.2E-32 213.4 18.2 159 104-271 20-180 (261)
23 3smz_A Protein raver-1, ribonu 100.0 4.7E-28 1.6E-32 215.4 18.9 165 103-272 92-266 (284)
24 2ghp_A U4/U6 snRNA-associated 99.9 1.3E-27 4.6E-32 213.3 14.7 162 104-270 115-291 (292)
25 3sde_A Paraspeckle component 1 99.9 1.8E-26 6.1E-31 202.4 15.4 150 186-357 22-176 (261)
26 4f25_A Polyadenylate-binding p 99.9 9.5E-23 3.2E-27 155.4 10.0 97 104-202 3-113 (115)
27 2kn4_A Immunoglobulin G-bindin 99.9 1.2E-21 4.1E-26 158.3 16.7 138 217-357 3-147 (158)
28 4fxv_A ELAV-like protein 1; RN 99.9 3.3E-22 1.1E-26 147.8 11.0 83 104-186 17-99 (99)
29 3s8s_A Histone-lysine N-methyl 99.8 2.1E-20 7.2E-25 140.8 11.6 84 103-186 3-86 (110)
30 2lxi_A RNA-binding protein 10; 99.8 3.3E-21 1.1E-25 140.2 5.6 82 106-187 1-84 (91)
31 2lkz_A RNA-binding protein 5; 99.8 9E-21 3.1E-25 138.5 7.7 81 105-185 8-94 (95)
32 2i2y_A Fusion protein consists 99.8 5.3E-20 1.8E-24 147.2 12.4 125 227-357 10-145 (150)
33 3lqv_A PRE-mRNA branch site pr 99.8 2.5E-20 8.5E-25 142.2 9.3 106 102-212 4-109 (115)
34 3md1_A Nuclear and cytoplasmic 99.8 1.5E-19 5E-24 129.4 11.1 81 106-186 1-81 (83)
35 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8E-20 2.7E-24 131.4 9.7 82 103-184 4-85 (85)
36 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-19 4.3E-24 131.0 10.3 83 104-186 4-86 (87)
37 2dnz_A Probable RNA-binding pr 99.8 2E-19 7E-24 132.1 11.5 85 103-187 2-86 (95)
38 2x1f_A MRNA 3'-END-processing 99.8 8E-20 2.7E-24 134.6 8.9 85 105-189 1-85 (96)
39 4fxv_A ELAV-like protein 1; RN 99.8 1.1E-19 3.8E-24 134.2 9.6 77 281-357 18-96 (99)
40 2jrs_A RNA-binding protein 39; 99.8 1.7E-19 5.7E-24 135.6 10.4 84 103-186 23-106 (108)
41 1whw_A Hypothetical protein ri 99.8 2.4E-19 8.3E-24 132.8 10.9 86 103-188 5-90 (99)
42 2e5h_A Zinc finger CCHC-type a 99.8 2.3E-19 7.8E-24 131.6 10.5 83 102-184 12-94 (94)
43 3p5t_L Cleavage and polyadenyl 99.8 4.7E-20 1.6E-24 134.0 6.6 80 107-186 2-83 (90)
44 2cq0_A Eukaryotic translation 99.8 2.9E-19 9.9E-24 133.4 11.0 85 103-187 12-96 (103)
45 2cqc_A Arginine/serine-rich sp 99.8 2.2E-19 7.5E-24 132.0 10.2 83 103-185 12-94 (95)
46 2la6_A RNA-binding protein FUS 99.8 2.8E-19 9.5E-24 132.4 10.8 84 101-184 8-99 (99)
47 2dgs_A DAZ-associated protein 99.8 4.1E-19 1.4E-23 131.5 11.5 85 102-187 6-90 (99)
48 2kn4_A Immunoglobulin G-bindin 99.8 6.5E-19 2.2E-23 142.2 13.4 133 135-273 2-153 (158)
49 2do4_A Squamous cell carcinoma 99.8 5.2E-19 1.8E-23 131.3 11.7 84 103-187 14-97 (100)
50 1x5u_A Splicing factor 3B subu 99.8 3.7E-19 1.3E-23 133.3 10.2 86 102-187 11-96 (105)
51 2dnm_A SRP46 splicing factor; 99.8 2.5E-19 8.5E-24 133.8 9.2 85 102-186 9-93 (103)
52 1p27_B RNA-binding protein 8A; 99.8 3.7E-19 1.3E-23 133.5 10.1 83 104-186 21-103 (106)
53 3ns6_A Eukaryotic translation 99.8 6.1E-20 2.1E-24 136.1 5.7 82 105-186 5-93 (100)
54 1x5t_A Splicing factor 3B subu 99.8 2.4E-19 8.2E-24 132.0 8.8 83 104-186 3-86 (96)
55 1x4h_A RNA-binding protein 28; 99.8 5.7E-19 2E-23 133.7 10.7 84 103-186 12-101 (111)
56 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.2E-19 1.1E-23 132.9 9.0 85 103-187 9-93 (102)
57 2dgo_A Cytotoxic granule-assoc 99.8 7.3E-19 2.5E-23 134.0 11.2 85 103-187 12-96 (115)
58 1x5s_A Cold-inducible RNA-bind 99.8 3.3E-19 1.1E-23 132.9 9.0 86 102-187 8-93 (102)
59 3s7r_A Heterogeneous nuclear r 99.8 8E-19 2.7E-23 126.7 10.6 81 102-183 7-87 (87)
60 2cpf_A RNA binding motif prote 99.8 4E-19 1.4E-23 131.4 9.1 84 104-187 3-89 (98)
61 2cpz_A CUG triplet repeat RNA- 99.8 5.3E-19 1.8E-23 134.7 10.0 84 104-187 23-106 (115)
62 1x4e_A RNA binding motif, sing 99.8 2.1E-19 7.1E-24 129.2 7.2 82 103-184 2-83 (85)
63 4f25_A Polyadenylate-binding p 99.8 3.1E-19 1.1E-23 135.9 8.3 76 282-357 5-80 (115)
64 2kxn_B Transformer-2 protein h 99.8 6E-19 2.1E-23 136.8 9.8 86 101-186 41-126 (129)
65 1s79_A Lupus LA protein; RRM, 99.8 3.8E-19 1.3E-23 132.1 8.2 80 104-185 9-88 (103)
66 2cph_A RNA binding motif prote 99.8 8.8E-19 3E-23 131.7 10.3 86 103-188 12-99 (107)
67 1oo0_B CG8781-PA, drosophila Y 99.8 6.4E-19 2.2E-23 133.2 9.5 83 104-186 24-106 (110)
68 3ucg_A Polyadenylate-binding p 99.8 7.9E-19 2.7E-23 127.3 9.6 80 106-186 6-85 (89)
69 2ywk_A Putative RNA-binding pr 99.8 9.6E-19 3.3E-23 128.5 9.9 82 103-185 13-94 (95)
70 2div_A TRNA selenocysteine ass 99.8 6.1E-19 2.1E-23 130.6 8.8 84 103-186 6-94 (99)
71 2lxi_A RNA-binding protein 10; 99.8 4.2E-19 1.4E-23 129.0 7.7 75 282-356 1-79 (91)
72 2dnh_A Bruno-like 5, RNA bindi 99.8 1.8E-18 6.2E-23 129.5 11.4 82 104-186 13-97 (105)
73 2d9p_A Polyadenylate-binding p 99.8 1.6E-18 5.4E-23 129.4 11.0 82 104-187 13-94 (103)
74 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.6E-19 3.3E-23 142.1 10.5 85 102-186 68-152 (165)
75 2dng_A Eukaryotic translation 99.8 1.5E-18 5.1E-23 129.5 10.6 82 103-186 12-93 (103)
76 4a8x_A RNA-binding protein wit 99.8 8.1E-19 2.8E-23 127.0 8.7 82 105-186 3-85 (88)
77 3r27_A HnRNP L, heterogeneous 99.8 2E-18 6.7E-23 125.9 10.6 79 102-186 17-97 (100)
78 3ulh_A THO complex subunit 4; 99.8 1.8E-18 6.3E-23 130.0 10.8 83 101-184 24-106 (107)
79 2wbr_A GW182, gawky, LD47780P; 99.8 1.8E-18 6.2E-23 121.4 9.9 74 105-184 6-79 (89)
80 2dgv_A HnRNP M, heterogeneous 99.8 1.7E-18 5.8E-23 126.4 10.1 83 103-187 5-87 (92)
81 2dgp_A Bruno-like 4, RNA bindi 99.8 8.9E-19 3.1E-23 131.4 8.8 85 103-187 10-97 (106)
82 2fy1_A RNA-binding motif prote 99.8 1.5E-18 5E-23 132.2 10.1 83 103-186 4-86 (116)
83 3n9u_C Cleavage and polyadenyl 99.8 1.1E-18 3.7E-23 139.8 9.8 82 105-186 54-137 (156)
84 2khc_A Testis-specific RNP-typ 99.8 8.9E-19 3.1E-23 134.1 9.0 82 103-184 37-118 (118)
85 2mss_A Protein (musashi1); RNA 99.8 4.5E-19 1.5E-23 124.2 6.6 75 108-183 1-75 (75)
86 3s8s_A Histone-lysine N-methyl 99.8 1.4E-18 4.9E-23 130.7 9.7 78 280-357 4-83 (110)
87 2cpe_A RNA-binding protein EWS 99.8 1.4E-18 4.9E-23 131.9 9.7 84 104-187 13-104 (113)
88 1wi8_A EIF-4B, eukaryotic tran 99.8 1.7E-18 5.9E-23 129.4 9.8 81 104-186 13-94 (104)
89 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-18 3.8E-23 128.6 8.4 80 102-187 12-93 (105)
90 2dhg_A TRNA selenocysteine ass 99.8 1.3E-18 4.5E-23 130.1 9.0 83 103-186 6-90 (104)
91 2ek1_A RNA-binding protein 12; 99.8 6.7E-19 2.3E-23 129.3 7.2 82 104-185 13-94 (95)
92 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.8E-18 1.6E-22 126.7 12.0 78 280-357 13-90 (103)
93 1p1t_A Cleavage stimulation fa 99.8 1.2E-18 4E-23 130.3 8.3 82 105-186 7-88 (104)
94 2cqp_A RNA-binding protein 12; 99.8 9.8E-19 3.3E-23 129.2 7.8 83 104-186 13-95 (98)
95 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.9E-19 2.7E-23 130.2 7.3 82 103-186 16-98 (100)
96 2dh8_A DAZ-associated protein 99.8 1.1E-18 3.9E-23 130.6 8.1 84 103-187 13-96 (105)
97 2hvz_A Splicing factor, argini 99.8 1.2E-18 3.9E-23 129.6 8.0 84 107-195 1-100 (101)
98 2rs2_A Musashi-1, RNA-binding 99.8 2.1E-18 7.2E-23 129.9 9.4 83 103-186 22-104 (109)
99 3q2s_C Cleavage and polyadenyl 99.8 8.4E-19 2.9E-23 149.7 8.1 82 105-186 67-150 (229)
100 1x4d_A Matrin 3; structural ge 99.8 1.6E-18 5.3E-23 127.8 8.4 81 104-190 13-96 (102)
101 1s79_A Lupus LA protein; RRM, 99.8 1.9E-18 6.5E-23 128.3 8.9 76 280-356 9-85 (103)
102 2lkz_A RNA-binding protein 5; 99.8 1.5E-18 5E-23 126.7 8.1 77 281-357 8-92 (95)
103 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.4E-19 2.2E-23 124.1 5.9 76 107-183 1-76 (77)
104 2cq3_A RNA-binding protein 9; 99.8 6.8E-18 2.3E-22 125.9 11.9 79 279-357 12-90 (103)
105 2dgx_A KIAA0430 protein; RRM d 99.8 4.9E-18 1.7E-22 124.9 10.9 77 280-357 7-87 (96)
106 2cqd_A RNA-binding region cont 99.8 2.8E-18 9.5E-23 130.9 9.9 82 104-186 15-96 (116)
107 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.3E-18 1.5E-22 122.2 10.3 78 280-357 5-84 (85)
108 3ex7_B RNA-binding protein 8A; 99.8 2.1E-18 7.3E-23 133.6 9.3 84 103-186 19-102 (126)
109 2cq3_A RNA-binding protein 9; 99.8 7.6E-18 2.6E-22 125.6 11.8 83 103-187 12-94 (103)
110 2kt5_A RNA and export factor-b 99.8 5.5E-18 1.9E-22 130.9 11.2 85 103-188 32-116 (124)
111 2dgw_A Probable RNA-binding pr 99.8 4.8E-18 1.7E-22 123.7 10.3 82 102-186 6-87 (91)
112 2dgx_A KIAA0430 protein; RRM d 99.8 3.7E-18 1.3E-22 125.5 9.7 81 104-187 7-91 (96)
113 1u6f_A Tcubp1, RNA-binding pro 99.8 3.6E-18 1.2E-22 134.7 10.1 84 103-186 39-122 (139)
114 1wez_A HnRNP H', FTP-3, hetero 99.8 2.9E-18 9.8E-23 127.3 8.8 81 102-185 11-91 (102)
115 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.3E-18 2.2E-22 126.1 10.7 82 103-186 12-93 (103)
116 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.1E-18 1.8E-22 122.4 9.7 78 280-357 4-83 (87)
117 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-17 3.8E-22 122.5 11.7 78 280-357 14-93 (94)
118 2lea_A Serine/arginine-rich sp 99.7 2.1E-18 7.1E-23 135.0 8.2 117 232-357 6-124 (135)
119 2cpi_A CCR4-NOT transcription 99.7 5.4E-18 1.8E-22 128.1 10.2 86 104-189 13-104 (111)
120 2do0_A HnRNP M, heterogeneous 99.7 8.8E-18 3E-22 127.7 11.4 81 104-185 13-93 (114)
121 2cqg_A TDP-43, TAR DNA-binding 99.7 8.2E-18 2.8E-22 125.4 11.0 83 103-187 12-94 (103)
122 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.1E-18 2.4E-22 135.7 11.4 84 103-186 36-119 (156)
123 2wbr_A GW182, gawky, LD47780P; 99.7 6.4E-18 2.2E-22 118.6 9.6 71 282-356 7-77 (89)
124 2x1f_A MRNA 3'-END-processing 99.7 9.2E-18 3.1E-22 123.4 11.0 77 281-357 1-79 (96)
125 2m2b_A RNA-binding protein 10; 99.7 7.8E-19 2.7E-23 136.9 5.4 82 105-187 22-109 (131)
126 2cqc_A Arginine/serine-rich sp 99.7 8.4E-18 2.9E-22 123.4 10.6 79 279-357 12-92 (95)
127 3ns6_A Eukaryotic translation 99.7 2.4E-18 8.4E-23 127.4 7.8 77 281-357 5-90 (100)
128 1wg5_A Heterogeneous nuclear r 99.7 5.3E-18 1.8E-22 126.6 9.7 81 104-186 13-94 (104)
129 2ywk_A Putative RNA-binding pr 99.7 5.1E-18 1.8E-22 124.6 9.4 78 280-357 14-92 (95)
130 2ki2_A SS-DNA binding protein 99.7 5.7E-19 2E-23 128.3 4.2 80 107-187 2-81 (90)
131 2dis_A Unnamed protein product 99.7 3.6E-18 1.2E-22 128.8 8.8 85 103-187 5-93 (109)
132 1sjq_A Polypyrimidine tract-bi 99.7 4.8E-18 1.6E-22 125.2 9.1 73 280-356 14-88 (105)
133 1whw_A Hypothetical protein ri 99.7 1.2E-17 3.9E-22 123.7 11.2 78 280-357 6-85 (99)
134 2err_A Ataxin-2-binding protei 99.7 4.8E-18 1.7E-22 127.9 9.1 79 279-357 26-104 (109)
135 2nlw_A Eukaryotic translation 99.7 3E-18 1E-22 128.2 7.9 80 105-186 14-100 (105)
136 1x5o_A RNA binding motif, sing 99.7 1.3E-17 4.6E-22 126.7 11.6 82 104-186 23-112 (114)
137 2cpj_A Non-POU domain-containi 99.7 7.1E-18 2.4E-22 124.8 9.8 85 103-193 12-96 (99)
138 2cq4_A RNA binding motif prote 99.7 4.1E-18 1.4E-22 129.5 8.6 80 106-186 25-104 (114)
139 2krb_A Eukaryotic translation 99.7 3.3E-18 1.1E-22 121.6 7.5 72 283-354 2-80 (81)
140 2do4_A Squamous cell carcinoma 99.7 1.2E-17 4E-22 123.9 10.7 78 280-357 15-93 (100)
141 1x5u_A Splicing factor 3B subu 99.7 1.3E-17 4.3E-22 124.9 10.9 78 280-357 13-92 (105)
142 2i2y_A Fusion protein consists 99.7 1.6E-17 5.4E-22 132.8 12.1 117 145-271 10-149 (150)
143 3r27_A HnRNP L, heterogeneous 99.7 7.3E-18 2.5E-22 122.9 9.2 73 280-356 19-93 (100)
144 2hgl_A HNRPF protein, heteroge 99.7 3.1E-18 1.1E-22 133.4 7.7 82 102-185 40-124 (136)
145 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 6.9E-18 2.4E-22 133.3 9.8 81 103-183 60-140 (140)
146 2krb_A Eukaryotic translation 99.7 1.6E-18 5.6E-23 123.2 5.6 73 106-180 1-80 (81)
147 3md1_A Nuclear and cytoplasmic 99.7 8.7E-18 3E-22 120.1 9.4 76 282-357 1-78 (83)
148 1x4a_A Splicing factor, argini 99.7 1.2E-17 4.2E-22 125.8 10.7 82 103-187 19-100 (109)
149 2cpy_A RNA-binding protein 12; 99.7 2.9E-18 9.9E-23 130.3 7.2 82 103-186 12-94 (114)
150 1x4b_A Heterogeneous nuclear r 99.7 6.1E-18 2.1E-22 129.0 9.1 81 106-187 27-107 (116)
151 2err_A Ataxin-2-binding protei 99.7 6.3E-18 2.2E-22 127.3 8.9 82 103-186 26-107 (109)
152 2cq1_A PTB-like protein L; RRM 99.7 1.8E-17 6E-22 122.3 11.0 77 104-186 13-91 (101)
153 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.1E-17 3.9E-22 124.4 10.1 78 280-357 10-89 (102)
154 2dnz_A Probable RNA-binding pr 99.7 1.2E-17 4.1E-22 122.6 10.0 78 280-357 3-82 (95)
155 2a3j_A U1 small nuclear ribonu 99.7 7.9E-18 2.7E-22 129.6 9.4 82 103-187 26-111 (127)
156 2dnm_A SRP46 splicing factor; 99.7 1.1E-17 3.9E-22 124.6 10.0 78 280-357 11-90 (103)
157 1x5s_A Cold-inducible RNA-bind 99.7 1.3E-17 4.5E-22 124.1 10.3 79 279-357 9-89 (102)
158 1x4f_A Matrin 3; structural ge 99.7 5.4E-18 1.8E-22 126.7 8.1 84 103-192 22-108 (112)
159 2ad9_A Polypyrimidine tract-bi 99.7 1.2E-17 3.9E-22 126.3 9.9 78 103-186 28-107 (119)
160 1oo0_B CG8781-PA, drosophila Y 99.7 2.1E-17 7.1E-22 124.8 11.4 78 280-357 24-103 (110)
161 2db1_A Heterogeneous nuclear r 99.7 5.3E-18 1.8E-22 129.5 8.2 81 103-185 14-97 (118)
162 2lea_A Serine/arginine-rich sp 99.7 1.8E-18 6.3E-23 135.3 5.7 83 104-186 45-127 (135)
163 2jwn_A Embryonic polyadenylate 99.7 7.8E-18 2.7E-22 130.0 9.1 81 105-186 35-115 (124)
164 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9.6E-18 3.3E-22 136.2 9.8 79 280-358 70-150 (165)
165 1wg1_A KIAA1579 protein, homol 99.7 1.2E-17 3.9E-22 120.8 9.1 84 104-194 3-86 (88)
166 2kt5_A RNA and export factor-b 99.7 4.1E-17 1.4E-21 125.9 12.7 81 278-358 31-112 (124)
167 2cph_A RNA binding motif prote 99.7 2.8E-17 9.7E-22 123.4 11.5 78 280-357 13-94 (107)
168 2dgs_A DAZ-associated protein 99.7 2.2E-17 7.6E-22 122.1 10.7 77 280-357 8-86 (99)
169 2fc9_A NCL protein; structure 99.7 1.7E-17 5.9E-22 123.2 10.0 81 103-187 12-92 (101)
170 1wex_A Hypothetical protein (r 99.7 2E-17 6.9E-22 122.8 10.0 78 104-187 13-92 (104)
171 1x5t_A Splicing factor 3B subu 99.7 1.4E-17 4.8E-22 122.5 9.1 78 280-357 3-83 (96)
172 1x4h_A RNA-binding protein 28; 99.7 3.9E-17 1.3E-21 123.5 11.7 78 280-357 13-98 (111)
173 2dnn_A RNA-binding protein 12; 99.7 7.1E-18 2.4E-22 126.3 7.4 77 106-185 16-92 (109)
174 2la4_A Nuclear and cytoplasmic 99.7 2.6E-17 8.9E-22 122.2 10.5 82 98-185 19-100 (101)
175 1iqt_A AUF1, heterogeneous nuc 99.7 2.1E-18 7.3E-23 120.7 4.3 75 108-183 1-75 (75)
176 3p5t_L Cleavage and polyadenyl 99.7 3.2E-18 1.1E-22 124.2 5.4 75 283-357 2-80 (90)
177 2nlw_A Eukaryotic translation 99.7 1.8E-17 6.2E-22 123.9 9.5 78 280-357 13-97 (105)
178 1p27_B RNA-binding protein 8A; 99.7 1.8E-17 6E-22 124.3 9.5 78 280-357 21-100 (106)
179 1x4d_A Matrin 3; structural ge 99.7 1.1E-17 3.9E-22 123.2 8.2 74 280-357 13-89 (102)
180 2la6_A RNA-binding protein FUS 99.7 1.7E-17 5.8E-22 122.7 9.2 78 280-357 11-98 (99)
181 1wel_A RNA-binding protein 12; 99.7 3.1E-18 1.1E-22 132.2 5.4 82 103-185 22-103 (124)
182 4a8x_A RNA-binding protein wit 99.7 2E-17 6.9E-22 119.5 9.4 77 281-357 3-82 (88)
183 2cq0_A Eukaryotic translation 99.7 1.6E-17 5.4E-22 123.9 9.0 78 280-357 13-92 (103)
184 2dnh_A Bruno-like 5, RNA bindi 99.7 2.2E-17 7.4E-22 123.6 9.8 78 280-357 13-94 (105)
185 2dnn_A RNA-binding protein 12; 99.7 2.8E-17 9.4E-22 123.1 10.3 76 280-357 14-90 (109)
186 2dgo_A Cytotoxic granule-assoc 99.7 2.9E-17 1E-21 125.0 10.7 78 280-357 13-92 (115)
187 2dnq_A RNA-binding protein 4B; 99.7 3.1E-17 1.1E-21 119.1 10.3 77 103-187 5-81 (90)
188 2jrs_A RNA-binding protein 39; 99.7 1.6E-17 5.6E-22 124.7 8.9 78 280-357 24-103 (108)
189 1nu4_A U1A RNA binding domain; 99.7 8.6E-18 2.9E-22 123.9 7.2 83 103-188 5-91 (97)
190 2dgv_A HnRNP M, heterogeneous 99.7 1.3E-17 4.4E-22 121.6 8.0 78 280-357 6-83 (92)
191 1x4a_A Splicing factor, argini 99.7 6.2E-17 2.1E-21 121.9 12.0 77 280-357 20-96 (109)
192 3ulh_A THO complex subunit 4; 99.7 2.6E-17 8.9E-22 123.6 9.8 78 280-357 27-105 (107)
193 2cq1_A PTB-like protein L; RRM 99.7 4.2E-17 1.4E-21 120.3 10.7 74 280-357 13-88 (101)
194 2fc8_A NCL protein; structure 99.7 3.6E-17 1.2E-21 121.7 10.4 82 103-187 12-93 (102)
195 2dgp_A Bruno-like 4, RNA bindi 99.7 3.5E-17 1.2E-21 122.7 10.4 78 280-357 11-93 (106)
196 2cq4_A RNA binding motif prote 99.7 5E-17 1.7E-21 123.5 11.3 77 280-357 23-101 (114)
197 2cpz_A CUG triplet repeat RNA- 99.7 2.6E-17 8.8E-22 125.3 9.6 78 280-357 23-102 (115)
198 2d9p_A Polyadenylate-binding p 99.7 2E-17 6.9E-22 123.3 8.8 77 280-357 13-90 (103)
199 2lmi_A GRSF-1, G-rich sequence 99.7 4.5E-18 1.5E-22 127.7 5.3 81 103-185 8-91 (107)
200 1why_A Hypothetical protein ri 99.7 4.1E-17 1.4E-21 120.2 10.2 79 103-187 14-94 (97)
201 2cpf_A RNA binding motif prote 99.7 1.3E-17 4.4E-22 123.2 7.4 78 280-357 3-85 (98)
202 2fy1_A RNA-binding motif prote 99.7 2.6E-17 9E-22 125.2 9.3 78 280-357 5-83 (116)
203 2xnq_A Nuclear polyadenylated 99.7 5.2E-17 1.8E-21 119.4 10.6 78 101-186 17-95 (97)
204 2khc_A Testis-specific RNP-typ 99.7 4E-17 1.4E-21 124.8 10.4 77 280-356 38-116 (118)
205 3s7r_A Heterogeneous nuclear r 99.7 3.7E-17 1.2E-21 117.9 9.6 76 280-356 9-86 (87)
206 2mss_A Protein (musashi1); RNA 99.7 1.4E-17 4.9E-22 116.5 7.2 72 284-356 1-74 (75)
207 3ucg_A Polyadenylate-binding p 99.7 3.1E-17 1.1E-21 118.8 9.2 76 281-357 5-82 (89)
208 1whx_A Hypothetical protein ri 99.7 4.3E-17 1.5E-21 123.0 10.2 75 280-358 8-82 (111)
209 2do0_A HnRNP M, heterogeneous 99.7 4.8E-17 1.6E-21 123.6 10.6 78 280-357 13-91 (114)
210 2kxn_B Transformer-2 protein h 99.7 2.3E-17 8E-22 127.8 8.9 78 280-357 44-123 (129)
211 1x4g_A Nucleolysin TIAR; struc 99.7 4.6E-17 1.6E-21 122.6 10.3 81 101-187 20-100 (109)
212 2jvr_A Nucleolar protein 3; RN 99.7 1.7E-17 5.8E-22 124.5 7.6 81 101-185 23-104 (111)
213 1wi8_A EIF-4B, eukaryotic tran 99.7 6.5E-17 2.2E-21 120.7 10.8 76 280-357 13-91 (104)
214 2ytc_A PRE-mRNA-splicing facto 99.7 3.6E-17 1.2E-21 117.4 9.1 76 103-184 9-85 (85)
215 1fj7_A Nucleolin RBD1, protein 99.7 1.9E-18 6.6E-23 128.4 2.3 81 104-186 15-95 (101)
216 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.5E-17 5E-22 123.3 7.1 77 279-357 16-95 (100)
217 1x4c_A Splicing factor, argini 99.7 6E-17 2.1E-21 121.7 10.5 78 103-187 12-94 (108)
218 1x4e_A RNA binding motif, sing 99.7 6.9E-18 2.4E-22 121.2 5.1 77 280-356 3-81 (85)
219 1wex_A Hypothetical protein (r 99.7 4E-17 1.4E-21 121.2 9.3 74 280-357 13-88 (104)
220 2ytc_A PRE-mRNA-splicing facto 99.7 5.1E-17 1.7E-21 116.6 9.6 74 280-357 10-84 (85)
221 2jvr_A Nucleolar protein 3; RN 99.7 5.7E-17 1.9E-21 121.6 10.0 75 281-357 27-102 (111)
222 2cpy_A RNA-binding protein 12; 99.7 4E-17 1.4E-21 123.9 9.2 77 280-357 13-91 (114)
223 2diu_A KIAA0430 protein; struc 99.7 6.5E-17 2.2E-21 114.5 9.5 80 104-193 7-91 (96)
224 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.6E-17 5.4E-22 116.9 6.4 75 283-358 1-77 (77)
225 2cpe_A RNA-binding protein EWS 99.7 6.8E-17 2.3E-21 122.6 10.3 78 280-357 13-100 (113)
226 1wg5_A Heterogeneous nuclear r 99.7 6E-17 2E-21 120.8 9.8 77 280-357 13-91 (104)
227 2j8a_A Histone-lysine N-methyl 99.7 2.4E-17 8.1E-22 123.5 7.5 79 107-185 3-95 (136)
228 2cqd_A RNA-binding region cont 99.7 1.1E-16 3.7E-21 122.0 11.4 77 280-357 15-93 (116)
229 3pgw_S U1-70K; protein-RNA com 99.7 6.2E-18 2.1E-22 157.7 5.3 78 280-357 100-179 (437)
230 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-16 3.9E-21 126.2 11.9 79 278-356 59-139 (140)
231 2div_A TRNA selenocysteine ass 99.7 3.5E-17 1.2E-21 121.0 8.3 78 280-357 7-91 (99)
232 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-17 4.9E-22 127.3 6.2 80 103-184 20-103 (123)
233 2e5j_A Methenyltetrahydrofolat 99.7 3.1E-17 1E-21 120.8 7.8 79 104-187 17-95 (97)
234 2dng_A Eukaryotic translation 99.7 6.3E-17 2.2E-21 120.6 9.6 76 280-357 13-90 (103)
235 2a3j_A U1 small nuclear ribonu 99.7 6.7E-17 2.3E-21 124.4 9.8 77 280-357 27-107 (127)
236 2dhg_A TRNA selenocysteine ass 99.7 3.3E-17 1.1E-21 122.3 7.9 78 280-357 7-87 (104)
237 2ad9_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 123.6 8.1 74 280-357 29-104 (119)
238 2cpx_A Hypothetical protein FL 99.7 7.8E-18 2.7E-22 128.2 4.3 80 104-187 23-106 (115)
239 3n9u_C Cleavage and polyadenyl 99.7 5.7E-17 1.9E-21 129.8 9.5 77 281-357 54-134 (156)
240 1p1t_A Cleavage stimulation fa 99.7 2.4E-17 8.1E-22 123.2 6.8 78 280-357 6-85 (104)
241 1fjc_A Nucleolin RBD2, protein 99.7 2.2E-17 7.5E-22 121.4 6.6 78 105-187 15-92 (96)
242 2cpi_A CCR4-NOT transcription 99.7 4.6E-17 1.6E-21 123.0 8.5 78 280-357 13-98 (111)
243 2jvo_A Nucleolar protein 3; nu 99.7 8.4E-17 2.9E-21 120.7 9.8 77 102-186 27-103 (108)
244 2dgw_A Probable RNA-binding pr 99.7 7.8E-17 2.7E-21 117.2 9.4 76 280-357 8-84 (91)
245 2f3j_A RNA and export factor b 99.7 4.9E-17 1.7E-21 133.1 9.2 86 102-188 84-169 (177)
246 2db1_A Heterogeneous nuclear r 99.7 3.9E-17 1.3E-21 124.7 8.1 77 280-357 15-95 (118)
247 2dnq_A RNA-binding protein 4B; 99.7 7.8E-17 2.7E-21 116.9 9.3 72 280-357 6-77 (90)
248 1whx_A Hypothetical protein ri 99.7 3.2E-17 1.1E-21 123.7 7.3 75 105-185 9-83 (111)
249 2cpj_A Non-POU domain-containi 99.7 6.9E-17 2.4E-21 119.4 9.0 74 280-357 13-86 (99)
250 2lcw_A RNA-binding protein FUS 99.5 1.5E-18 5.3E-23 132.3 0.0 83 104-186 5-95 (116)
251 2xnq_A Nuclear polyadenylated 99.7 1.4E-16 4.9E-21 117.1 10.6 73 279-357 19-92 (97)
252 3ex7_B RNA-binding protein 8A; 99.7 1.1E-16 3.8E-21 123.9 10.4 78 280-357 20-99 (126)
253 2dgt_A RNA-binding protein 30; 99.7 1.3E-16 4.4E-21 116.2 10.1 78 102-187 6-83 (92)
254 2rs2_A Musashi-1, RNA-binding 99.7 1.4E-16 5E-21 119.7 10.3 78 280-358 23-102 (109)
255 3lqv_A PRE-mRNA branch site pr 99.7 1.2E-16 4E-21 121.7 9.9 77 280-357 6-82 (115)
256 1why_A Hypothetical protein ri 99.7 2E-16 6.8E-21 116.5 10.8 74 280-357 15-90 (97)
257 2xs2_A Deleted in azoospermia- 99.7 1.6E-17 5.3E-22 123.7 4.7 79 105-186 8-86 (102)
258 2m2b_A RNA-binding protein 10; 99.7 3.7E-17 1.3E-21 127.4 6.9 77 280-357 21-105 (131)
259 2hgm_A HNRPF protein, heteroge 99.7 3.7E-17 1.3E-21 125.2 6.7 80 103-185 39-120 (126)
260 2cqp_A RNA-binding protein 12; 99.7 3.7E-17 1.3E-21 120.7 6.6 78 280-357 13-92 (98)
261 2dnp_A RNA-binding protein 14; 99.7 1.8E-16 6E-21 115.0 10.0 72 280-357 7-78 (90)
262 1u6f_A Tcubp1, RNA-binding pro 99.7 1.5E-16 5E-21 125.4 10.3 78 280-357 40-119 (139)
263 2dh8_A DAZ-associated protein 99.7 8E-17 2.7E-21 120.5 8.3 77 280-357 14-92 (105)
264 2dnp_A RNA-binding protein 14; 99.7 1.3E-16 4.4E-21 115.8 9.1 77 102-186 5-81 (90)
265 1wez_A HnRNP H', FTP-3, hetero 99.7 5E-17 1.7E-21 120.6 6.9 76 280-357 13-89 (102)
266 2ek1_A RNA-binding protein 12; 99.7 2.8E-17 9.6E-22 120.6 5.5 78 280-357 13-92 (95)
267 2dnl_A Cytoplasmic polyadenyla 99.7 1.7E-16 5.9E-21 120.4 10.0 79 104-185 6-87 (114)
268 1x4g_A Nucleolysin TIAR; struc 99.7 1.7E-16 5.8E-21 119.5 9.8 74 280-357 23-96 (109)
269 1wf1_A RNA-binding protein RAL 99.7 2E-16 6.7E-21 119.4 10.2 91 258-357 6-97 (110)
270 2hgn_A Heterogeneous nuclear r 99.7 1.8E-17 6E-22 129.5 4.5 81 103-186 43-123 (139)
271 1x4c_A Splicing factor, argini 99.7 3.4E-16 1.2E-20 117.6 11.4 73 280-357 13-90 (108)
272 2kvi_A Nuclear polyadenylated 99.7 8.5E-17 2.9E-21 118.2 7.8 76 103-186 7-83 (96)
273 3md3_A Nuclear and cytoplasmic 99.7 2.7E-16 9.1E-21 127.6 11.5 82 103-184 84-165 (166)
274 2jvo_A Nucleolar protein 3; nu 99.7 1.4E-16 4.9E-21 119.5 9.1 73 279-357 28-100 (108)
275 2dgu_A Heterogeneous nuclear r 99.7 2.6E-16 9.1E-21 117.2 10.5 72 280-357 9-80 (103)
276 1x4b_A Heterogeneous nuclear r 99.7 2.1E-16 7.2E-21 120.4 10.2 77 280-357 25-103 (116)
277 2ki2_A SS-DNA binding protein 99.7 3.4E-17 1.1E-21 118.9 5.4 74 283-357 2-77 (90)
278 2hgl_A HNRPF protein, heteroge 99.7 4.3E-17 1.5E-21 126.9 6.3 77 280-357 42-122 (136)
279 2lmi_A GRSF-1, G-rich sequence 99.7 5.1E-17 1.7E-21 121.9 6.4 77 280-357 9-89 (107)
280 1iqt_A AUF1, heterogeneous nuc 99.7 7.2E-17 2.5E-21 112.9 6.8 72 284-356 1-74 (75)
281 2fc9_A NCL protein; structure 99.7 2.5E-16 8.5E-21 116.9 10.1 75 280-357 13-88 (101)
282 2dgu_A Heterogeneous nuclear r 99.7 1.7E-16 6E-21 118.1 9.2 76 104-187 9-84 (103)
283 2cpd_A Apobec-1 stimulating pr 99.7 3.5E-16 1.2E-20 115.6 10.6 76 104-187 13-90 (99)
284 2dgt_A RNA-binding protein 30; 99.7 3.8E-16 1.3E-20 113.7 10.6 72 280-357 8-79 (92)
285 2la4_A Nuclear and cytoplasmic 99.7 1.5E-16 5.3E-21 118.0 8.5 73 281-357 26-98 (101)
286 3egn_A RNA-binding protein 40; 99.7 2.3E-17 7.8E-22 130.7 4.1 84 103-186 42-130 (143)
287 2e44_A Insulin-like growth fac 99.7 1.2E-16 4.1E-21 117.5 7.7 79 104-186 13-92 (96)
288 2cqg_A TDP-43, TAR DNA-binding 99.7 4.2E-16 1.4E-20 116.1 10.7 76 280-357 13-90 (103)
289 1nu4_A U1A RNA binding domain; 99.7 1.4E-16 4.8E-21 117.3 7.9 76 280-357 6-86 (97)
290 2hgn_A Heterogeneous nuclear r 99.7 4.2E-17 1.4E-21 127.4 5.2 76 280-357 44-120 (139)
291 2dis_A Unnamed protein product 99.7 2.7E-16 9.1E-21 118.5 9.5 78 280-357 6-89 (109)
292 2cq2_A Hypothetical protein LO 99.7 2.6E-16 8.8E-21 117.6 9.1 73 280-356 23-102 (114)
293 1x4f_A Matrin 3; structural ge 99.7 9.5E-17 3.2E-21 119.9 6.7 74 280-357 23-99 (112)
294 2cqh_A IGF-II mRNA-binding pro 99.7 9.6E-17 3.3E-21 117.2 6.6 77 103-186 5-83 (93)
295 2kvi_A Nuclear polyadenylated 99.7 2.2E-16 7.5E-21 116.0 8.4 72 280-357 8-80 (96)
296 2cpd_A Apobec-1 stimulating pr 99.7 8.5E-16 2.9E-20 113.5 11.6 72 280-357 13-86 (99)
297 2e5g_A U6 snRNA-specific termi 99.7 2.8E-16 9.7E-21 114.9 8.9 77 104-186 6-82 (94)
298 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.4E-16 1.2E-20 125.8 10.1 78 280-357 37-116 (156)
299 2hvz_A Splicing factor, argini 99.7 1.4E-16 4.7E-21 118.3 7.2 72 283-357 1-72 (101)
300 2jwn_A Embryonic polyadenylate 99.7 1.3E-16 4.5E-21 123.1 7.1 77 280-357 34-112 (124)
301 2hzc_A Splicing factor U2AF 65 99.7 5.1E-16 1.7E-20 111.8 9.8 71 280-355 4-85 (87)
302 3zzy_A Polypyrimidine tract-bi 99.7 4.9E-16 1.7E-20 118.8 10.1 80 103-187 25-107 (130)
303 2cpx_A Hypothetical protein FL 99.7 3.3E-16 1.1E-20 119.2 9.1 76 280-357 23-102 (115)
304 2hgm_A HNRPF protein, heteroge 99.7 2.9E-16 9.9E-21 120.2 8.4 76 280-357 40-118 (126)
305 1wf1_A RNA-binding protein RAL 99.6 3.1E-16 1E-20 118.3 8.4 74 105-186 26-100 (110)
306 1x5o_A RNA binding motif, sing 99.6 5.9E-16 2E-20 117.5 10.0 77 280-356 23-108 (114)
307 2g4b_A Splicing factor U2AF 65 99.6 4.5E-16 1.5E-20 127.2 9.9 79 105-183 93-171 (172)
308 2e5j_A Methenyltetrahydrofolat 99.6 3.7E-16 1.3E-20 115.0 8.3 75 280-357 17-91 (97)
309 2e44_A Insulin-like growth fac 99.6 7.2E-16 2.5E-20 113.2 9.9 76 280-357 13-89 (96)
310 3beg_B Splicing factor, argini 99.6 1.7E-16 5.7E-21 120.6 6.6 74 280-358 14-87 (115)
311 1wel_A RNA-binding protein 12; 99.6 1.3E-16 4.6E-21 123.0 6.1 77 280-357 23-101 (124)
312 2voo_A Lupus LA protein; RNA-b 99.6 9.8E-16 3.3E-20 127.2 11.6 117 240-357 64-184 (193)
313 2dha_A FLJ20171 protein; RRM d 99.6 1.6E-16 5.3E-21 121.5 6.1 76 281-357 22-102 (123)
314 3pgw_S U1-70K; protein-RNA com 99.6 4.9E-16 1.7E-20 144.9 10.6 82 105-186 101-182 (437)
315 3d2w_A TAR DNA-binding protein 99.6 7.3E-16 2.5E-20 111.3 9.2 76 102-186 7-84 (89)
316 2pe8_A Splicing factor 45; RRM 99.6 1.1E-15 3.6E-20 113.7 10.2 83 103-185 5-93 (105)
317 4f02_A Polyadenylate-binding p 99.6 5.6E-16 1.9E-20 131.3 9.7 78 280-357 13-92 (213)
318 1sjr_A Polypyrimidine tract-bi 99.6 7.5E-16 2.6E-20 122.3 9.6 80 104-187 44-125 (164)
319 1x5p_A Negative elongation fac 99.6 1.3E-15 4.6E-20 112.0 10.3 77 103-187 12-88 (97)
320 2yh0_A Splicing factor U2AF 65 99.6 7.7E-16 2.6E-20 128.8 10.2 85 103-187 111-195 (198)
321 2xs2_A Deleted in azoospermia- 99.6 3.2E-16 1.1E-20 116.5 6.9 76 280-357 7-83 (102)
322 2f3j_A RNA and export factor b 99.6 9.1E-16 3.1E-20 125.5 9.9 80 279-358 85-165 (177)
323 2cq2_A Hypothetical protein LO 99.6 4.9E-16 1.7E-20 116.1 7.5 78 101-184 20-104 (114)
324 2dnl_A Cytoplasmic polyadenyla 99.6 8.8E-16 3E-20 116.5 8.9 78 280-358 6-99 (114)
325 2e5i_A Heterogeneous nuclear r 99.6 1.9E-15 6.5E-20 115.1 10.7 75 107-187 26-103 (124)
326 2e5g_A U6 snRNA-specific termi 99.6 7.7E-16 2.6E-20 112.6 8.1 73 281-357 7-79 (94)
327 1fjc_A Nucleolin RBD2, protein 99.6 4.2E-16 1.4E-20 114.5 6.7 75 280-357 14-88 (96)
328 1fj7_A Nucleolin RBD1, protein 99.6 1.7E-16 5.9E-21 117.7 4.3 76 280-357 15-92 (101)
329 3q2s_C Cleavage and polyadenyl 99.6 5.3E-16 1.8E-20 132.3 7.8 77 281-357 67-147 (229)
330 1b7f_A Protein (SXL-lethal pro 99.6 2.3E-15 7.8E-20 122.4 11.1 80 104-183 87-168 (168)
331 2cqh_A IGF-II mRNA-binding pro 99.6 6.8E-16 2.3E-20 112.6 7.0 73 280-357 6-80 (93)
332 2hzc_A Splicing factor U2AF 65 99.6 8.9E-16 3E-20 110.6 7.4 72 104-182 4-86 (87)
333 3beg_B Splicing factor, argini 99.6 8.1E-16 2.8E-20 116.8 7.4 75 104-185 14-93 (115)
334 1wg1_A KIAA1579 protein, homol 99.6 8.2E-16 2.8E-20 110.9 7.0 72 281-357 4-75 (88)
335 1x5p_A Negative elongation fac 99.6 4.5E-15 1.5E-19 109.1 11.0 72 280-357 13-84 (97)
336 2pe8_A Splicing factor 45; RRM 99.6 3.1E-15 1.1E-19 111.1 9.8 78 280-357 6-91 (105)
337 3d2w_A TAR DNA-binding protein 99.6 4.5E-15 1.5E-19 107.1 10.1 71 280-357 9-81 (89)
338 2diu_A KIAA0430 protein; struc 99.6 2.4E-15 8.3E-20 106.5 8.3 68 281-356 7-80 (96)
339 2fc8_A NCL protein; structure 99.6 2.4E-15 8.1E-20 111.8 8.4 76 279-357 12-89 (102)
340 1sjr_A Polypyrimidine tract-bi 99.6 2.8E-15 9.6E-20 119.0 9.0 75 280-356 44-120 (164)
341 2voo_A Lupus LA protein; RNA-b 99.6 3.9E-15 1.3E-19 123.6 10.1 78 106-185 109-186 (193)
342 3tyt_A Heterogeneous nuclear r 99.6 4.3E-15 1.5E-19 124.7 10.3 74 281-357 3-77 (205)
343 2e5i_A Heterogeneous nuclear r 99.6 6.6E-15 2.2E-19 112.2 10.3 71 282-356 25-98 (124)
344 2lcw_A RNA-binding protein FUS 99.4 9.7E-17 3.3E-21 122.3 0.0 78 280-357 5-92 (116)
345 3v4m_A Splicing factor U2AF 65 99.6 6.3E-15 2.2E-19 109.5 9.6 78 280-357 3-94 (105)
346 3egn_A RNA-binding protein 40; 99.6 1.1E-15 3.8E-20 121.0 5.8 77 280-357 43-127 (143)
347 1wf0_A TDP-43, TAR DNA-binding 99.6 1.3E-15 4.4E-20 109.9 5.6 77 104-187 3-79 (88)
348 2j8a_A Histone-lysine N-methyl 99.6 2.6E-15 9E-20 112.5 6.9 73 283-355 3-91 (136)
349 3nmr_A Cugbp ELAV-like family 99.6 7.8E-15 2.7E-19 120.0 10.5 79 105-184 94-175 (175)
350 3zzy_A Polypyrimidine tract-bi 99.6 6.2E-15 2.1E-19 112.7 9.1 73 281-356 27-102 (130)
351 2bz2_A Negative elongation fac 99.6 6.2E-15 2.1E-19 112.7 9.1 77 102-186 35-111 (121)
352 1fje_B Nucleolin RBD12, protei 99.6 6.1E-15 2.1E-19 120.8 9.1 77 105-186 98-174 (175)
353 2dit_A HIV TAT specific factor 99.5 3.1E-14 1.1E-18 107.5 10.2 85 102-190 11-106 (112)
354 2adc_A Polypyrimidine tract-bi 99.5 2.5E-14 8.4E-19 122.5 10.7 79 276-357 28-107 (229)
355 2bz2_A Negative elongation fac 99.5 1.4E-14 4.7E-19 110.8 8.0 72 280-357 37-108 (121)
356 1wf0_A TDP-43, TAR DNA-binding 99.5 8.8E-15 3E-19 105.5 6.3 72 281-357 4-75 (88)
357 2dit_A HIV TAT specific factor 99.5 3.9E-14 1.3E-18 106.9 10.2 76 280-357 13-99 (112)
358 3u1l_A PRE-mRNA-splicing facto 99.5 1.8E-14 6.1E-19 122.2 9.0 99 253-357 107-226 (240)
359 3u1l_A PRE-mRNA-splicing facto 99.5 1.9E-14 6.6E-19 122.0 8.5 79 102-186 130-229 (240)
360 3v4m_A Splicing factor U2AF 65 99.5 4.1E-14 1.4E-18 105.1 8.0 81 105-185 4-96 (105)
361 1jmt_A Splicing factor U2AF 35 99.5 1.4E-14 4.8E-19 107.5 4.6 71 287-357 20-103 (104)
362 3ue2_A Poly(U)-binding-splicin 99.5 4.5E-14 1.5E-18 106.9 6.7 79 280-358 18-107 (118)
363 1qm9_A Polypyrimidine tract-bi 99.5 6.1E-14 2.1E-18 117.3 8.1 73 282-357 3-76 (198)
364 1jmt_A Splicing factor U2AF 35 99.5 1.5E-14 5.1E-19 107.3 3.7 73 111-184 20-104 (104)
365 3pgw_A U1-A; protein-RNA compl 99.5 1.6E-13 5.6E-18 121.2 10.7 77 280-357 7-87 (282)
366 3ue2_A Poly(U)-binding-splicin 99.5 1.4E-13 4.7E-18 104.2 8.3 81 105-185 19-108 (118)
367 3s6e_A RNA-binding protein 39; 99.5 3.4E-13 1.2E-17 101.3 9.9 77 280-358 5-91 (114)
368 3tht_A Alkylated DNA repair pr 99.4 7.3E-13 2.5E-17 118.4 10.1 71 280-354 16-91 (345)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 7.2E-12 2.5E-16 91.7 10.2 75 105-186 9-90 (100)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.4E-12 1.9E-16 92.3 8.9 61 292-357 27-87 (100)
371 3s6e_A RNA-binding protein 39; 99.3 9.3E-12 3.2E-16 93.4 9.3 79 103-185 4-92 (114)
372 3tht_A Alkylated DNA repair pr 99.3 7E-12 2.4E-16 112.0 8.5 77 102-184 14-97 (345)
373 1owx_A Lupus LA protein, SS-B, 99.3 2.3E-11 7.9E-16 91.3 9.2 74 280-357 16-93 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.2 8.9E-11 3E-15 82.4 8.1 70 280-356 5-82 (91)
375 2dnr_A Synaptojanin-1; RRM dom 99.2 7.8E-11 2.7E-15 82.7 7.5 74 104-186 5-86 (91)
376 1owx_A Lupus LA protein, SS-B, 99.2 1.4E-10 4.7E-15 87.1 9.3 74 104-183 16-93 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 2.2E-10 7.6E-15 80.7 5.4 70 280-356 13-91 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.0 9.3E-10 3.2E-14 77.5 5.8 75 101-184 10-93 (95)
379 2l9w_A U4/U6 snRNA-associated- 99.0 4.5E-09 1.5E-13 75.4 9.3 72 282-357 21-97 (117)
380 3dxb_A Thioredoxin N-terminall 98.9 1.6E-09 5.6E-14 91.9 5.9 65 294-358 141-211 (222)
381 3dxb_A Thioredoxin N-terminall 98.9 7.1E-09 2.4E-13 87.9 8.8 82 104-185 122-212 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.5 7.3E-07 2.5E-11 64.0 8.7 72 105-182 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.3 9.7E-06 3.3E-10 57.8 10.6 87 104-199 6-99 (104)
384 1wwh_A Nucleoporin 35, nucleop 98.2 1.3E-05 4.5E-10 59.1 9.1 73 280-358 22-95 (119)
385 2dhx_A Poly (ADP-ribose) polym 98.1 1E-05 3.5E-10 57.7 8.0 71 281-358 7-82 (104)
386 1uw4_A UPF3X; nonsense mediate 97.9 4.3E-05 1.5E-09 53.9 7.2 67 283-349 2-72 (91)
387 1uw4_A UPF3X; nonsense mediate 97.9 4.9E-05 1.7E-09 53.6 7.4 68 107-174 2-71 (91)
388 1wey_A Calcipressin 1; structu 97.9 3.9E-05 1.3E-09 55.0 6.6 70 282-355 5-79 (104)
389 1wey_A Calcipressin 1; structu 97.8 2.5E-05 8.4E-10 56.0 5.5 74 106-185 5-83 (104)
390 3p3d_A Nucleoporin 53; structu 97.7 7.7E-05 2.6E-09 55.8 5.8 73 283-357 8-96 (132)
391 1whv_A Poly(A)-specific ribonu 97.5 0.00025 8.6E-09 49.9 6.8 58 103-169 13-70 (100)
392 1whv_A Poly(A)-specific ribonu 97.4 0.00035 1.2E-08 49.1 6.4 54 283-343 17-70 (100)
393 2l08_A Regulator of nonsense t 97.3 0.00041 1.4E-08 49.1 5.3 68 282-349 9-80 (97)
394 3ctr_A Poly(A)-specific ribonu 97.3 0.00026 8.9E-09 50.0 4.2 54 283-343 7-60 (101)
395 2l08_A Regulator of nonsense t 97.3 0.00035 1.2E-08 49.5 4.9 69 106-174 9-79 (97)
396 1wwh_A Nucleoporin 35, nucleop 97.0 0.0022 7.4E-08 47.3 7.0 71 105-183 23-94 (119)
397 3ctr_A Poly(A)-specific ribonu 96.8 0.0015 5.1E-08 46.1 4.7 54 107-169 7-60 (101)
398 3pq1_A Poly(A) RNA polymerase; 96.2 0.0023 7.8E-08 59.2 3.0 56 282-341 53-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 96.0 0.0034 1.2E-07 58.0 3.3 56 105-166 52-107 (464)
400 3p3d_A Nucleoporin 53; structu 95.7 0.0089 3E-07 44.7 3.7 78 105-184 6-97 (132)
401 3d45_A Poly(A)-specific ribonu 89.0 1.3 4.3E-05 41.8 8.3 55 282-343 440-494 (507)
402 4eyt_A Telomerase associated p 86.7 4.8 0.00016 27.4 7.7 58 281-344 11-68 (129)
403 3d45_A Poly(A)-specific ribonu 86.4 2 6.7E-05 40.4 8.0 56 106-170 440-495 (507)
404 2g0c_A ATP-dependent RNA helic 82.7 3.7 0.00013 27.2 6.0 59 292-357 11-74 (76)
405 4e8u_A Putative uncharacterize 72.2 3.7 0.00013 32.1 3.9 49 283-332 13-72 (172)
406 4eyt_A Telomerase associated p 68.5 25 0.00085 23.9 8.2 59 104-170 10-68 (129)
407 4e8u_A Putative uncharacterize 51.9 29 0.001 27.1 5.5 55 108-165 14-80 (172)
408 3j21_T 50S ribosomal protein L 38.9 67 0.0023 21.8 5.1 56 285-341 25-82 (86)
409 3fry_A Probable copper-exporti 27.5 1.2E+02 0.004 19.0 5.7 54 283-341 7-60 (73)
410 3h7h_B Transcription elongatio 26.1 74 0.0025 22.5 3.8 36 308-346 40-75 (106)
411 1vq8_S 50S ribosomal protein L 24.0 1.1E+02 0.0037 20.7 4.1 55 285-340 24-80 (85)
412 1xn9_A 30S ribosomal protein S 23.2 2E+02 0.0067 20.1 5.8 49 116-165 28-81 (101)
413 1igq_A Transcriptional repress 22.8 91 0.0031 19.6 3.2 22 135-157 21-42 (62)
414 2i9x_A Putative septation prot 22.5 1.2E+02 0.0039 20.7 4.0 25 132-156 5-29 (87)
415 2exu_A Transcription initiatio 21.4 1.1E+02 0.0036 24.6 4.3 44 309-357 139-182 (200)
416 3ts2_A Protein LIN-28 homolog 21.2 20 0.00068 27.3 -0.0 28 297-330 2-29 (148)
417 3mfb_A Uncharacterized protein 20.2 1.4E+02 0.0048 22.8 4.5 36 118-153 3-41 (157)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.1e-46 Score=332.90 Aligned_cols=240 Identities=21% Similarity=0.377 Sum_probs=221.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.++++|||+|||+++|+++|+++|+.|| |..+.+ ++++|||||+|.+.++|.+|+..|++..+.|++|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4679999999999999999999999999 999988 567899999999999999999999999999999999999
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCe
Q 018143 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
.+..+|||+|||+.+++++|+.+|++||. |..+.++++ ..++.++|||||.|.+.++|..|+..+++. .+.|+.+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEE
Confidence 99999999999999999999999999999 999999988 567899999999999999999999999864 67899999
Q ss_pred eeecCCCCCCCccccccccceEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHh
Q 018143 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNT-STEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~ 341 (360)
+.|+.+..... .....++|||+|||..+ ++++|+++|++||.|..|.|+.+..+. +|||||+|.++++|.+|+..
T Consensus 169 v~~a~~~~~~~---~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 245 (284)
T 3smz_A 169 VHWTDAGQLTP---ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQ 245 (284)
T ss_dssp EEECCGGGCCT---TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHH
T ss_pred EEECCCCCCCc---ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHH
Confidence 99998765432 22457899999999995 999999999999999999998887766 89999999999999999999
Q ss_pred hCCceeCCeeEeEEee
Q 018143 342 TEKYEIDGKSHLHFPV 357 (360)
Q Consensus 342 lng~~~~G~~l~v~p~ 357 (360)
|||+.|+|+.|.|.+.
T Consensus 246 l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 246 ADGLSLGGSHLRVSFC 261 (284)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred hCCCccCCeEEEEEEe
Confidence 9999999999999764
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=5.4e-46 Score=332.73 Aligned_cols=248 Identities=18% Similarity=0.300 Sum_probs=211.7
Q ss_pred hcCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 100 ~~~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
...++..++|||+|||+++|+++|+.+|+.||.|..|.+++++. .++|||||+|.+.++|.+|+. +++..+.|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 34456789999999999999999999999999999999999874 358999999999999999994 899999999999
Q ss_pred EeecCCccceecCCCCCCCCHHHHHHHHHhhC-CceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccC
Q 018143 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (360)
Q Consensus 180 v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~ 258 (360)
|.++. .++|||+|||+.++.++|+.+|++|| . |..+.++++.. +.++|||||.|.+.++|.+|+..+++. .+.
T Consensus 112 v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~ 185 (292)
T 2ghp_A 112 VSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGL--KIE 185 (292)
T ss_dssp EEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EET
T ss_pred EEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCC--EeC
Confidence 99985 78999999999999999999999999 7 99999988733 778999999999999999999999865 678
Q ss_pred CCCCeeeecCCCCCCCcc-ccccccceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEcCCCCC--CC-CCeEEEEeCCHH
Q 018143 259 GNTPTISWADPKSTPDHS-AAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAERS 333 (360)
Q Consensus 259 ~~~~~v~~~~~~~~~~~~-~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~--~~-kg~afV~F~~~~ 333 (360)
|+.+.+.|+.+....... ......++|||+|||.. +++++|+++|++||.|..|+|+.+.. +. +|||||+|.+++
T Consensus 186 g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 186 GYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp TEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 999999999887665544 44566789999999999 99999999999999999999998876 54 899999999999
Q ss_pred HHHHHHHhhCCceeCCeeEeEEee
Q 018143 334 SALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 334 ~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+|.+|+ .|||+.|+|++|.|.+.
T Consensus 266 ~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 266 SAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp HHHHHG-GGTTEEETTEEEEEEEC
T ss_pred HHHHHH-HhcCCEECCcEEEEEEe
Confidence 999999 99999999999999864
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.5e-34 Score=246.20 Aligned_cols=165 Identities=21% Similarity=0.436 Sum_probs=147.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred CccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCee
Q 018143 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
.... ..
T Consensus 94 ~~~~-----------------------------------------------------------~~--------------- 99 (213)
T 4f02_A 94 RDPS-----------------------------------------------------------LR--------------- 99 (213)
T ss_dssp CCTH-----------------------------------------------------------HH---------------
T ss_pred cccc-----------------------------------------------------------cc---------------
Confidence 2110 00
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC
Q 018143 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng 344 (360)
....++|||+|||..+|+++|+++|++||.|..|+|+.+..+.+|||||+|.+.++|.+|+..|||
T Consensus 100 --------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 100 --------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp --------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred --------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 011247999999999999999999999999999999888766699999999999999999999999
Q ss_pred ceeCCeeEeEEee
Q 018143 345 YEIDGKSHLHFPV 357 (360)
Q Consensus 345 ~~~~G~~l~v~p~ 357 (360)
..|+|++|.|.+.
T Consensus 166 ~~~~g~~i~V~~a 178 (213)
T 4f02_A 166 MLLNDRKVFVGRF 178 (213)
T ss_dssp CEETTEECEEEEC
T ss_pred CEECCEEEEEEEc
Confidence 9999999999763
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.7e-33 Score=229.47 Aligned_cols=162 Identities=24% Similarity=0.458 Sum_probs=147.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
++++|||+|||+++|+++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|++..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999886
Q ss_pred CccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCee
Q 018143 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3210
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhh
Q 018143 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l 342 (360)
....++|+|+|||..+++++|+++|++||.|..+.++.++. +. +|||||+|.+.++|.+|+..|
T Consensus 86 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 86 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp --------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 01236899999999999999999999999999999988763 33 899999999999999999999
Q ss_pred CCceeCC--eeEeEEe
Q 018143 343 EKYEIDG--KSHLHFP 356 (360)
Q Consensus 343 ng~~~~G--~~l~v~p 356 (360)
||..|.| ++|.|..
T Consensus 152 ~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCCCTTCSSCCEEEE
T ss_pred cCCEecCCCeEEEEEe
Confidence 9999988 8888864
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-33 Score=225.65 Aligned_cols=162 Identities=17% Similarity=0.336 Sum_probs=144.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCCc
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
++|||+|||+++|+++|+++|++||.|.++.+++++. |+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999875 789999999999999999999999999999999999887532
Q ss_pred cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeee
Q 018143 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred cCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCC
Q 018143 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng 344 (360)
....+.++|||+|||..+++++|+++|++||.|..+.++.+..+ . +|||||+|.+.++|.+|+..|||
T Consensus 82 ----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 82 ----------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp ----------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred ----------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 00123468999999999999999999999999999999877543 3 89999999999999999999999
Q ss_pred ceeCCeeEeEEee
Q 018143 345 YEIDGKSHLHFPV 357 (360)
Q Consensus 345 ~~~~G~~l~v~p~ 357 (360)
..|+|++|.|.+.
T Consensus 152 ~~~~g~~i~v~~a 164 (166)
T 3md3_A 152 QDLNGRPLRINWA 164 (166)
T ss_dssp CEETTEECEEEES
T ss_pred CccCCcEEEEEec
Confidence 9999999999764
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.7e-32 Score=224.22 Aligned_cols=164 Identities=24% Similarity=0.467 Sum_probs=140.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCC--CcceEEEEEecCHHHHHHHHHHhcCCccC---CeEEE
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIR 179 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~a~v~f~~~~~a~~a~~~l~~~~~~---g~~l~ 179 (360)
+.++|||+|||+++|+++|+++|++||.|..+++++++.+| +++|||||+|.+.++|.+|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999999877 89999999999999999999999987764 34444
Q ss_pred EeecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCC
Q 018143 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (360)
Q Consensus 180 v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 259 (360)
+.++.+...
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 444321100
Q ss_pred CCCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHH
Q 018143 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338 (360)
Q Consensus 260 ~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A 338 (360)
.....++|||+|||..+|+++|+++|++||.|..|+++.+..+. +|||||+|.+.++|.+|
T Consensus 91 ------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 91 ------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp ------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred ------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 01235689999999999999999999999999999998887766 99999999999999999
Q ss_pred HHhhCCceeC---CeeEeEEee
Q 018143 339 VKDTEKYEID---GKSHLHFPV 357 (360)
Q Consensus 339 ~~~lng~~~~---G~~l~v~p~ 357 (360)
+..|||..+. |++|.|.+.
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHhcCCcccCCCCCCeEEEec
Confidence 9999998776 499998753
No 7
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=7.3e-31 Score=221.11 Aligned_cols=195 Identities=19% Similarity=0.252 Sum_probs=144.4
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 105 NGSEVFIGGLP-KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nlp-~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
++++|||+||| +.+|+++|+.+|++||.|.+|+++++ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 3799999999999999999999999999999999998
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCe
Q 018143 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
+.... .|..... ..-+. ... ++.......+ |.....+
T Consensus 78 ~~~~~-----~p~~~~~-------~~~~~-~~~----~~~~~~~~~r------~~~~~~~-------------------- 114 (205)
T 3tyt_A 78 KQPAI-----MPGQSYG-------LEDGS-CSY----KDFSESRNNR------FSTPEQA-------------------- 114 (205)
T ss_dssp SCSCC-----CCCSCCB-------CTTSC-BSE----EECTTCTTCS------CSSHHHH--------------------
T ss_pred cCCcc-----CCCcccc-------cccCC-ccc----cccCCCcccc------ccCcccc--------------------
Confidence 75432 1111000 00000 000 0000000000 0000000
Q ss_pred eeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCe--eEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018143 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v--~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
.. .....++++|||+|||..+|+++|+++|++||.| ..|++..++.+++|||||+|.+.++|.+|+..
T Consensus 115 ----~~------~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 115 ----AK------NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp ----TT------SCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHH
T ss_pred ----cc------cccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHH
Confidence 00 0011346799999999999999999999999999 89999887755579999999999999999999
Q ss_pred hCCceeCCe----eEeEEee
Q 018143 342 TEKYEIDGK----SHLHFPV 357 (360)
Q Consensus 342 lng~~~~G~----~l~v~p~ 357 (360)
|||..|.|+ ++.|+.+
T Consensus 185 lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 185 LNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HTTCEECCSSSSSCEECEEE
T ss_pred hCCCCccCCCCCcceEEEec
Confidence 999999988 4666654
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=8e-31 Score=214.43 Aligned_cols=158 Identities=27% Similarity=0.492 Sum_probs=146.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
+++|||+|||+++|+++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999998999999999999999999999999999999999999999875
Q ss_pred c------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCC
Q 018143 186 K------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (360)
Q Consensus 186 ~------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 259 (360)
. ++|||+|||..+++++|+.+|++||. |..++++++ ..++.++|||||+|.+.++|.+|+..+++. .+.|
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g 157 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSG 157 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--CCTT
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCC-EeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHhcCC--ccCC
Confidence 4 67999999999999999999999998 999999988 567889999999999999999999999876 4556
Q ss_pred C--CCeeeec
Q 018143 260 N--TPTISWA 267 (360)
Q Consensus 260 ~--~~~v~~~ 267 (360)
+ ++.+.||
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 5 4677664
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=3.7e-31 Score=222.39 Aligned_cols=167 Identities=24% Similarity=0.485 Sum_probs=148.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+++|+++|+.+|++||.|..|.+++++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345678999999999999999999999999999999999999999999999999999999999965 9999999999999
Q ss_pred ecCCc------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHH
Q 018143 182 LSETK------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (360)
Q Consensus 182 ~~~~~------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 249 (360)
++.+. ++|||+|||+.+++++|+++|++||. |..++++++ ..++.++|||||.|.+.++|.+|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK-IEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEEeec-CCCCCccceEEEEECCHHHHHHHHHh
Confidence 88643 68999999999999999999999998 999999998 56788999999999999999999975
Q ss_pred HhccCcccCCCCCeeeecCCCCCCC
Q 018143 250 MLNANFKLDGNTPTISWADPKSTPD 274 (360)
Q Consensus 250 ~~~~~~~~~~~~~~v~~~~~~~~~~ 274 (360)
+ +..+.|+.+.|.|+.+.....
T Consensus 166 -~--~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -K--YHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -S--CCEETTEECEEEECC------
T ss_pred -C--CcEECCEEEEEEecCChhHhc
Confidence 3 568899999999998876544
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.4e-30 Score=222.29 Aligned_cols=167 Identities=23% Similarity=0.431 Sum_probs=151.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+++|+++|+++|+.||.|..|.+++++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999998875
Q ss_pred Cc-----------------cceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHH
Q 018143 185 TK-----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (360)
Q Consensus 185 ~~-----------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 247 (360)
.. ++|||+|||..+++++|+++|++||. |..++++++ ..+++++|||||.|.+.++|.+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK-IKSATLARD-PTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC-eeEEEEEec-CCCCCcCceEEEEecCHHHHHHHH
Confidence 43 68999999999999999999999998 999999998 567889999999999999999999
Q ss_pred HHHhccCcccCCCCCeeeecCCCCCCCc
Q 018143 248 QKMLNANFKLDGNTPTISWADPKSTPDH 275 (360)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 275 (360)
..+++. .+.|+.+.|.|+.+......
T Consensus 185 ~~l~g~--~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 185 SSMNLF--DLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HHHTTC--BCSSSBCEEEECSSCSSTTS
T ss_pred HHccCC--EeCCcEEEEEEecCCCCCCC
Confidence 999865 67999999999988755443
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=6.1e-30 Score=227.33 Aligned_cols=243 Identities=16% Similarity=0.231 Sum_probs=150.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.++.++|||+|||+++|+++|+ .+|++||.|..|++++ +|+++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999977 8999999999999886 58899999999999999999999999999999999
Q ss_pred EEeecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEE--ecCHHHHHHHHHHHhccCcc
Q 018143 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL--YYNNACADYSRQKMLNANFK 256 (360)
Q Consensus 179 ~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~--f~~~~~a~~a~~~~~~~~~~ 256 (360)
+|.++............... .......-..... ...................+.+. ......+..+... ...
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFV-ERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRI----MHH 156 (282)
T ss_pred EEEEeccCcchhhhhcCCcc-cchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccc----ccc
Confidence 99999765432221111110 0000000000000 00000000000000000000000 0000000000000 000
Q ss_pred cCCCCCeeee--cCCCC-----------------------CCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 018143 257 LDGNTPTISW--ADPKS-----------------------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK 311 (360)
Q Consensus 257 ~~~~~~~v~~--~~~~~-----------------------~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~ 311 (360)
..|....... ..+.. .........++++|||+|||..+++++|+++|++||.|..
T Consensus 157 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~ 236 (282)
T 3pgw_A 157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE 236 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE
Confidence 0000000000 00000 0000112235689999999999999999999999999999
Q ss_pred EEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC-CeeEeEEee
Q 018143 312 VVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID-GKSHLHFPV 357 (360)
Q Consensus 312 v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~-G~~l~v~p~ 357 (360)
|+++.++ +|||||+|.+.++|.+|+..|||+.|. |+.|+|.+.
T Consensus 237 v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 237 VRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred EEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 9998655 489999999999999999999999999 999999763
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=6.8e-31 Score=216.04 Aligned_cols=156 Identities=19% Similarity=0.407 Sum_probs=137.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 173 (360)
+.++|||+|||+++|+++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 77777774 55899999999999999999 8999999
Q ss_pred CCeEEEEeecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhcc
Q 018143 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (360)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~ 253 (360)
.|++|.|.++..... .
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------~------------------------ 91 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------L------------------------ 91 (172)
T ss_dssp TTEECEEECCSSCCC----------------------------------------C------------------------
T ss_pred cCceeeecCCcccCC----------------------------------------C------------------------
Confidence 999999987642110 0
Q ss_pred CcccCCCCCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCC
Q 018143 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAE 331 (360)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~ 331 (360)
...++|||+|||..+++++|+++|++||.|..|.++.++. +. +|||||+|.+
T Consensus 92 --------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 92 --------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp --------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred --------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 0046899999999999999999999999999999988853 33 8999999999
Q ss_pred HHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 332 RSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 332 ~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++|.+|+..|||..|+|++|.|.+.
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999875
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.9e-31 Score=220.05 Aligned_cols=163 Identities=22% Similarity=0.354 Sum_probs=139.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+++|+++|+.+|.+||.+.. .++.+..+|+++|||||+|.+.++|.+|+ .|++..+.|++|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 4557899999999999999999999999997766 34455567899999999999999999999 599999999999999
Q ss_pred ecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCC
Q 018143 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (360)
Q Consensus 182 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (360)
++.+...
T Consensus 87 ~~~~~~~------------------------------------------------------------------------- 93 (175)
T 1fje_B 87 KPKGRDS------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCCSSC-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 8864210
Q ss_pred CeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018143 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
......++|||+|||..+++++|+++|++||.|..+ ......+|||||+|.+.++|.+|+..
T Consensus 94 ---------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 94 ---------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp ---------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred ---------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 000245799999999999999999999999998877 22223389999999999999999999
Q ss_pred hCCceeCCeeEeEEee
Q 018143 342 TEKYEIDGKSHLHFPV 357 (360)
Q Consensus 342 lng~~~~G~~l~v~p~ 357 (360)
|||..|+|+.|.|.+.
T Consensus 156 l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYT 171 (175)
T ss_dssp HTEEEETTEEEEEEEC
T ss_pred hCCCEECCeEEEEEec
Confidence 9999999999999764
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1e-30 Score=213.90 Aligned_cols=159 Identities=27% Similarity=0.520 Sum_probs=147.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
++++|||+|||+++|+++|+.+|++||.|.+|.+++++.+|+++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999997 4678999999999886
Q ss_pred C------ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccC
Q 018143 185 T------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (360)
Q Consensus 185 ~------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~ 258 (360)
+ .++|||+|||+.+++++|+++|++||. |..++++++ ..++.++|||||.|.+.++|.+|+. + .+..+.
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~ 154 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT-IIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-N--KFIDFK 154 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSC-CSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-C--SEECSS
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCcc-EEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-C--CCEEeC
Confidence 5 468999999999999999999999998 999999988 5678999999999999999999987 4 456889
Q ss_pred CCCCeeeecCCC
Q 018143 259 GNTPTISWADPK 270 (360)
Q Consensus 259 ~~~~~v~~~~~~ 270 (360)
|+.+.|.|+.|+
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999875
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=4.5e-30 Score=216.10 Aligned_cols=176 Identities=18% Similarity=0.368 Sum_probs=140.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 173 (360)
..++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|+ .||+..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 47899999999999999999999999 5 5666666 566899999999999999999 8999999
Q ss_pred CCeEEEEeecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhcc
Q 018143 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (360)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~ 253 (360)
.|+.|+|.++.......- . . .. .
T Consensus 76 ~g~~i~v~~~~~~~~~~~------~-----------------------~----~~------------------------~ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPG------M-----------------------S----EN------------------------P 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCC------S-----------------------S----SC------------------------S
T ss_pred cCceEEEeCCCCCCCCCC------C-----------------------c----CC------------------------C
Confidence 999999998864321000 0 0 00 0
Q ss_pred CcccCCCCCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCC
Q 018143 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAE 331 (360)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~ 331 (360)
.....+ ..........++|||+|||..+++++|+++|++||.|..|+++.++. +. +|||||+|.+
T Consensus 99 ~~~~~~-------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~ 165 (198)
T 2yh0_A 99 SVYVPG-------------VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 165 (198)
T ss_dssp SCCCTT-------------SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred cCCCCC-------------CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECC
Confidence 000000 00011124568999999999999999999999999999999988763 33 8999999999
Q ss_pred HHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 332 RSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 332 ~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++|.+|+..|||..|+|+.|.|.+.
T Consensus 166 ~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 166 INVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp SSHHHHHHHHHTTCEETTEECEEEES
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 99999999999999999999999864
No 16
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=5.1e-30 Score=215.42 Aligned_cols=168 Identities=23% Similarity=0.411 Sum_probs=143.6
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCe
Q 018143 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
...++|||+|||+.+++++|+.+|++||. |..+.++++ ..+++++|||||.|.+.++|.+|+.. .+..+.|+.+.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~---~~~~~~g~~l~ 85 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGT-LTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNA---RPHKVDGRVVE 85 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHT---CSCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEEc-CCCCCccceEEEEeCCHHHHHHHHhc---CCCEECCEEee
Confidence 34679999999999999999999999998 999999998 56788999999999999999999975 35678999999
Q ss_pred eeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHh
Q 018143 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~ 341 (360)
+.++.+.............++|||+|||..+|+++|+++|++||.|..|.++.+... . +|||||+|.+.++|.+|+..
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 999887766555555566789999999999999999999999999999999887643 3 89999999999999999996
Q ss_pred hCCceeCCeeEeEEee
Q 018143 342 TEKYEIDGKSHLHFPV 357 (360)
Q Consensus 342 lng~~~~G~~l~v~p~ 357 (360)
+|..|+|+.|.|.+.
T Consensus 166 -~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -SCCEETTEECEEEEC
T ss_pred -CCcEECCEEEEEEec
Confidence 899999999999874
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=3.1e-29 Score=215.69 Aligned_cols=193 Identities=23% Similarity=0.314 Sum_probs=145.6
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 102 LPPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
..+++++|||+|||+ .+|+++|+++|++||.|..|++++++ +|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345789999999999 99999999999999999999999865 789999999999999999999999999999999
Q ss_pred eecCCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCC
Q 018143 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260 (360)
Q Consensus 181 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~ 260 (360)
.++.+..... +..... .....+ .|. .... .+
T Consensus 105 ~~a~~~~~~~----~~~~~~------------------------~~~~~~-----~~~-------------~~~~---~~ 135 (229)
T 2adc_A 105 TLSKHQNVQL----PREGQE------------------------DQGLTK-----DYG-------------NSPL---HR 135 (229)
T ss_dssp ECCSCCCCCC----CCSSSS------------------------TTTTEE-----ECT-------------TCSS---CC
T ss_pred EEecCccccC----cccccc------------------------cccccc-----ccc-------------cCcc---cc
Confidence 9987543211 100000 000000 000 0000 00
Q ss_pred CCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHH
Q 018143 261 TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 261 ~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (360)
+..+ ..........++++|||+|||..+++++|+++|++|| .|..|++.... +|||||+|.+.++|.+|+
T Consensus 136 -----~~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 136 -----FKKP-GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp -----CCST-TSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEEESSHHHHHHHH
T ss_pred -----cCCc-cccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEEECCHHHHHHHH
Confidence 0000 0000011123568999999999999999999999999 99999995532 489999999999999999
Q ss_pred HhhCCceeC-CeeEeEEee
Q 018143 340 KDTEKYEID-GKSHLHFPV 357 (360)
Q Consensus 340 ~~lng~~~~-G~~l~v~p~ 357 (360)
..|||..|. |++|.|.+.
T Consensus 207 ~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 207 IDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp HHHTTCBSSSSCBCEEEEC
T ss_pred HHHCCCccCCCCeEEEEEe
Confidence 999999999 999998763
No 18
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.6e-29 Score=205.46 Aligned_cols=161 Identities=25% Similarity=0.481 Sum_probs=143.8
Q ss_pred CccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCee
Q 018143 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
++++|||+|||+.+++++|+.+|++||. |..++++++ ..++.++|||||.|.+.++|..|+..+++ ..+.|+.+.+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTLNG--LRLQTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC-CCCCcceeEEEEEECCHHHHHHHHHHcCC--CccCCceEEE
Confidence 3578999999999999999999999998 999999998 56788999999999999999999999876 4678999999
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhh
Q 018143 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l 342 (360)
.++.+... ....++|+|+|||..+++++|+++|++||.|..++++.+.. +. +|||||+|.+.++|.+|+..|
T Consensus 77 ~~~~~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 77 SYARPSSA------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp EECCCCCG------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EecCCCcc------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Confidence 99876542 24567899999999999999999999999999999987763 33 899999999999999999999
Q ss_pred CCceeCCee--EeEE
Q 018143 343 EKYEIDGKS--HLHF 355 (360)
Q Consensus 343 ng~~~~G~~--l~v~ 355 (360)
||..|.|+. |.|.
T Consensus 151 ~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 151 NGQKPSGATEPITVK 165 (167)
T ss_dssp TTCCCTTCSSCCEEE
T ss_pred cCCccCCCccceEEE
Confidence 999999986 5554
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=2.6e-29 Score=211.49 Aligned_cols=190 Identities=23% Similarity=0.324 Sum_probs=144.5
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 105 NGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+++|||+|||+ .+|+++|+.+|++||.|..|++++++ +|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998765 789999999999999999999999999999999998
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCe
Q 018143 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
.+.... +|..... ..+..+++ .. ... ++
T Consensus 77 ~~~~~~----~~~~~~~------------------------~~~~~~~~-----~~-------------~~~---~r--- 104 (198)
T 1qm9_A 77 KHQNVQ----LPREGQE------------------------DQGLTKDY-----GN-------------SPL---HR--- 104 (198)
T ss_dssp CCCSCC----CSSSSSS------------------------SSSCEEES-----SC-------------CCT---TS---
T ss_pred cCCCcC----CCCcCCc------------------------cccccccc-----cC-------------Cch---hh---
Confidence 754321 1110000 00000000 00 000 00
Q ss_pred eeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 018143 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (360)
+..+.. ........++++|||+|||..+++++|+++|++|| .|..|++.+.. +|||||+|.+.++|.+|+..|
T Consensus 105 --~~~~~~-~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 105 --FKKPGS-KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp --SSSCCC-CCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHH
T ss_pred --ccCccc-cccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHh
Confidence 000000 00111124578999999999999999999999999 99999996543 489999999999999999999
Q ss_pred CCceeC-CeeEeEEee
Q 018143 343 EKYEID-GKSHLHFPV 357 (360)
Q Consensus 343 ng~~~~-G~~l~v~p~ 357 (360)
||..|+ |++|.|.+.
T Consensus 179 ~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 179 HNHDLGENHHLRVSFS 194 (198)
T ss_dssp TSSCCSSCCSCCEEEE
T ss_pred cCCccCCCCeEEEEee
Confidence 999999 999998763
No 20
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.5e-29 Score=206.98 Aligned_cols=160 Identities=21% Similarity=0.412 Sum_probs=143.0
Q ss_pred CccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCee
Q 018143 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
+.++|||+|||+.+++++|+++|++||. |..++++++ ..+++++|||||.|.+.++|..|+.. ...+.|+.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT-VTDLKIMKD-PATGRSRGFGFLSFEKPSSVDEVVKT----QHILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC-EEEEECCCC-TTTSSCCSCEEEEESSTHHHHHHHHS----CCEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEEC-CCCCCccceEEEEEccHHHHHHHHhc----ccccCCeEccc
Confidence 4678999999999999999999999998 999999988 56889999999999999999999884 34788999988
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhh
Q 018143 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l 342 (360)
.++.+.. ...+.++|||+|||..+++++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+. +
T Consensus 76 ~~~~~~~------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 76 KRAIPRD------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp EECCCHH------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred ccccchh------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 8876532 234567999999999999999999999999999999998864 33 8999999999999999998 8
Q ss_pred CCceeCCeeEeEEee
Q 018143 343 EKYEIDGKSHLHFPV 357 (360)
Q Consensus 343 ng~~~~G~~l~v~p~ 357 (360)
||..|+|++|.|.+.
T Consensus 149 ~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 149 KFIDFKDRKIEIKRA 163 (167)
T ss_dssp SEECSSSSCEEEEEC
T ss_pred CCEEeCCeEEEEeec
Confidence 999999999999874
No 21
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=4.5e-29 Score=212.88 Aligned_cols=168 Identities=21% Similarity=0.421 Sum_probs=144.9
Q ss_pred ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeee
Q 018143 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.++|||+|||+.+++++|+++|+.||. |..++++++ ..+++++|||||.|.+.++|.+|+..+++. .+.|+.+.+.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~ 103 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWD-SVTMKHKGFAFVEYEVPEAAQLALEQMNSV--MLGGRNIKVG 103 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSC-EEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHHSSC--CCC-CCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCC-EEEEEEeec-CCCCccCceEEEEeCCHHHHHHHHHHccCC--eeCCeeEEEe
Confidence 468999999999999999999999998 999999988 567889999999999999999999988754 6789999998
Q ss_pred ecCCCCCCCcc-----ccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHH
Q 018143 266 WADPKSTPDHS-----AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKA 338 (360)
Q Consensus 266 ~~~~~~~~~~~-----~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A 338 (360)
++......... ......++|||+|||..+++++|+++|++||.|..|+++.+... . +|||||+|.+.++|.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 87665422111 12245689999999999999999999999999999999887543 3 89999999999999999
Q ss_pred HHhhCCceeCCeeEeEEee
Q 018143 339 VKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 339 ~~~lng~~~~G~~l~v~p~ 357 (360)
+..|||..|+|+.|.|.+.
T Consensus 184 ~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 184 VSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp HHHHTTCBCSSSBCEEEEC
T ss_pred HHHccCCEeCCcEEEEEEe
Confidence 9999999999999999864
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=3.4e-28 Score=213.37 Aligned_cols=159 Identities=23% Similarity=0.390 Sum_probs=145.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+++|+++|+.+|++||.|..|.+.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4568999999999999999999999999999999954 4799999999999999999999999999999999999
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcc--cCCCC
Q 018143 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNT 261 (360)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~--~~~~~ 261 (360)
.+.++|||+|||+.++.++|+.+|+.||. |..+.++++ .+++++|||||.|.+..+|.+|+..+++..+. ..+++
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~ 170 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGP-VEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP 170 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCC-eEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce
Confidence 99999999999999999999999999998 999999998 47889999999999999999999999764432 34788
Q ss_pred CeeeecCCCC
Q 018143 262 PTISWADPKS 271 (360)
Q Consensus 262 ~~v~~~~~~~ 271 (360)
+.|.++.+..
T Consensus 171 i~v~~~~~~~ 180 (261)
T 3sde_A 171 VIVEPMEQFD 180 (261)
T ss_dssp CEEEECCCEE
T ss_pred EEEeeccccC
Confidence 8998887654
No 23
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=4.7e-28 Score=215.36 Aligned_cols=165 Identities=20% Similarity=0.387 Sum_probs=153.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
.+..++|||+|||+.+|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc---------cceecCCCCCCC-CHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhc
Q 018143 183 SETK---------NRLFIGNVPKNW-TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (360)
Q Consensus 183 ~~~~---------~~l~v~nl~~~~-~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~ 252 (360)
+.+. ++|||+|||+.+ ++++|+.+|++||. |..+++++++ ++.++|+|||.|.+.++|.+|+..+++
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8753 579999999996 99999999999998 9999999873 688999999999999999999999986
Q ss_pred cCcccCCCCCeeeecCCCCC
Q 018143 253 ANFKLDGNTPTISWADPKST 272 (360)
Q Consensus 253 ~~~~~~~~~~~v~~~~~~~~ 272 (360)
. .+.|+.+.|.|+.+...
T Consensus 249 ~--~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 249 L--SLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp C--EETTEECEEEECCSSSC
T ss_pred C--ccCCeEEEEEEecCCCc
Confidence 5 56999999999988764
No 24
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1.3e-27 Score=213.29 Aligned_cols=162 Identities=23% Similarity=0.389 Sum_probs=141.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...++|||+|||+.+|+++|+.+|++|| .|..|.++.++. |+++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3678999999999999999999999999 999999998876 88999999999999999999999999999999999998
Q ss_pred cCC-------------ccceecCCCCCC-CCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHH
Q 018143 183 SET-------------KNRLFIGNVPKN-WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248 (360)
Q Consensus 183 ~~~-------------~~~l~v~nl~~~-~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~ 248 (360)
+.+ .++|||+|||+. ++.++|+.+|++||. |..++++++...++.++|||||.|.+.++|.+|+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 754 267999999999 999999999999998 9999999874335899999999999999999999
Q ss_pred HHhccCcccCCCCCeeeecCCC
Q 018143 249 KMLNANFKLDGNTPTISWADPK 270 (360)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~~~~~ 270 (360)
.+++. .+.|+.+.|.|+.++
T Consensus 272 ~l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GGTTE--EETTEEEEEEECCCC
T ss_pred HhcCC--EECCcEEEEEEecCC
Confidence 88765 678999999999875
No 25
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=1.8e-26 Score=202.40 Aligned_cols=150 Identities=26% Similarity=0.453 Sum_probs=134.9
Q ss_pred ccceecCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeee
Q 018143 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.++|||+|||+.+++++|+.+|++||. |..+.+.+ ++|||||.|.+..+|..|+..+++. .+.|+.+.+.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~-------~kg~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v~ 91 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGE-PSEVFINR-------DRGFGFIRLESRTLAEIAKAELDGT--ILKSRPLRIR 91 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCC-CSEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCC-EEEEEEeC-------CCcEEEEEECCHHHHHHHHHHcCCc--EECCceeEee
Confidence 468999999999999999999999998 99999865 3799999999999999999988765 6789999999
Q ss_pred ecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCC
Q 018143 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng 344 (360)
++.+ .++|||+|||..+|+++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+
T Consensus 92 ~a~~------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 92 FATH------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp ECCC------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eccc------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 9865 4589999999999999999999999999999998886665 89999999999999999999954
Q ss_pred -ceeC---CeeEeEEee
Q 018143 345 -YEID---GKSHLHFPV 357 (360)
Q Consensus 345 -~~~~---G~~l~v~p~ 357 (360)
..+. |++|.|.|.
T Consensus 160 ~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 160 GAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp SCEESSSSCCBCEEEEC
T ss_pred CeEEecCCCceEEEeec
Confidence 4444 999999875
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=9.5e-23 Score=155.42 Aligned_cols=97 Identities=23% Similarity=0.440 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 356789999999999999999999999999999999986 558999999999999999999999999999999999988
Q ss_pred CCc--------------cceecCCCCCCCCHHH
Q 018143 184 ETK--------------NRLFIGNVPKNWTEDE 202 (360)
Q Consensus 184 ~~~--------------~~l~v~nl~~~~~~~~ 202 (360)
.++ ++|||+|||+.+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 653 4699999999998753
No 27
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=1.2e-21 Score=158.32 Aligned_cols=138 Identities=20% Similarity=0.318 Sum_probs=108.5
Q ss_pred EEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccC-----cccCCCCCeeeecCCCCCCCccccccccceEEEcCCC
Q 018143 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-----FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP 291 (360)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp 291 (360)
+.++.+ ..+++||+||.|.+...|.+|+..+++.. ....+.......................++|||+|||
T Consensus 3 ~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 3 YKLILN---GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEE---CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred EEEEec---CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 445554 23689999999999999999998877532 2223333333333333333333344567899999999
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 292 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 99999999999999999999999988643 3 999999999999999999999999999999999874
No 28
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=147.84 Aligned_cols=83 Identities=31% Similarity=0.598 Sum_probs=79.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
-.+++|||+|||+++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|+..|||..|.|++|+|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
+|+
T Consensus 97 kPS 99 (99)
T 4fxv_A 97 RPS 99 (99)
T ss_dssp CBC
T ss_pred eCC
Confidence 863
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=140.78 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+++.++|||+|||+.+|+++|+++|++||.|..|.|++++.||+++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8753
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=3.3e-21 Score=140.22 Aligned_cols=82 Identities=35% Similarity=0.566 Sum_probs=76.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHh-cCCccCCeEEEEeec
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCSLS 183 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~ 183 (360)
+++|||+|||+++|+++|+++|++|| .|.+|++++++.||+++|||||+|.+.++|.+|++.+ ++..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999876 456799999999999
Q ss_pred CCcc
Q 018143 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8754
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=9e-21 Score=138.47 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCC--eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCC----ccCCeEE
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK----ELKGKTI 178 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~----~~~g~~l 178 (360)
.-.||||+|||+.+|+++|+++|++||. |.+|++++++.||+++|||||+|.+.++|.+|++.||+. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999995 679999999999999999999999999999999999997 4899999
Q ss_pred EEeecCC
Q 018143 179 RCSLSET 185 (360)
Q Consensus 179 ~v~~~~~ 185 (360)
.|.+|++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 32
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=5.3e-20 Score=147.23 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=105.2
Q ss_pred CCCccEEEEEecCHHHHHHHHHHH-hccCcccCCCCCeeeecCCCC----------CCCccccccccceEEEcCCCCCCC
Q 018143 227 SRNRGFSFVLYYNNACADYSRQKM-LNANFKLDGNTPTISWADPKS----------TPDHSAAASQVKALYVKNIPDNTS 295 (360)
Q Consensus 227 ~~~~g~~~v~f~~~~~a~~a~~~~-~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~~~~~~l~V~nlp~~~t 295 (360)
...+|++++.|.+.+.|.+|+..+ ++. .+.| .+.+.++.... ...........++|||+|||..+|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~--~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDN--GVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHH--TCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCC--CCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 356899999999999999999998 765 5567 77777765421 112233345678999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 296 TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 296 ~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+++|+++|++||.|..|+|+.+ .+|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 9999999999999999999887 3599999999999999999999999999999999864
No 33
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=2.5e-20 Score=142.16 Aligned_cols=106 Identities=19% Similarity=0.321 Sum_probs=96.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+..+++|||+|||+.+|+++|+.+|++||.|..|.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3556889999999999999999999999999999999876 5669999999999999999999999999999999999
Q ss_pred ecCCccceecCCCCCCCCHHHHHHHHHhhCC
Q 018143 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212 (360)
Q Consensus 182 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 212 (360)
++.+.... .+++...++++|.++|++||-
T Consensus 81 ~a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 99875543 778888899999999999994
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.5e-19 Score=129.39 Aligned_cols=81 Identities=27% Similarity=0.540 Sum_probs=77.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
+.+|||+|||+.+++++|+.+|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 018143 186 K 186 (360)
Q Consensus 186 ~ 186 (360)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=8e-20 Score=131.40 Aligned_cols=82 Identities=33% Similarity=0.601 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+.+.++|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 018143 183 SE 184 (360)
Q Consensus 183 ~~ 184 (360)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 36
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=130.99 Aligned_cols=83 Identities=31% Similarity=0.525 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+.++|||+|||+.+|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=132.15 Aligned_cols=85 Identities=32% Similarity=0.643 Sum_probs=80.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+++.++|||+|||+.+|+++|+.+|++||.|..|.+++++.+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 97653
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=8e-20 Score=134.57 Aligned_cols=85 Identities=32% Similarity=0.666 Sum_probs=80.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
++++|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cccce
Q 018143 185 TKNRL 189 (360)
Q Consensus 185 ~~~~l 189 (360)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 76544
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=134.24 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+|+++|+++|++||.|..|+|+.++.++ +|||||+|.++++|.+|+..|||..|.|++|+|.+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999998876543 899999999999999999999999999999999753
No 40
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=135.61 Aligned_cols=84 Identities=32% Similarity=0.636 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
++..++|||+|||+.+|+++|+.+|++||.|..|.+++++.+|+++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9865
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=132.80 Aligned_cols=86 Identities=30% Similarity=0.444 Sum_probs=81.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..+.++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCccc
Q 018143 183 SETKNR 188 (360)
Q Consensus 183 ~~~~~~ 188 (360)
+.+...
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987543
No 42
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=131.61 Aligned_cols=83 Identities=34% Similarity=0.594 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+++.++|||+|||+.+++++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 018143 182 LSE 184 (360)
Q Consensus 182 ~~~ 184 (360)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 43
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4.7e-20 Score=134.04 Aligned_cols=80 Identities=31% Similarity=0.559 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
.+|||+|||+++|+++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred Cc
Q 018143 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 44
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=133.38 Aligned_cols=85 Identities=29% Similarity=0.514 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..+.++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98653
No 45
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=131.98 Aligned_cols=83 Identities=33% Similarity=0.482 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+.+.++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 018143 183 SET 185 (360)
Q Consensus 183 ~~~ 185 (360)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=132.44 Aligned_cols=84 Identities=32% Similarity=0.491 Sum_probs=79.7
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc
Q 018143 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 101 ~~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
..+...++|||+|||+++|+++|+.+|++||.|.. ++++.++.+|+++|||||+|.+.++|.+|+..|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45667899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCeEEEEeecC
Q 018143 173 LKGKTIRCSLSE 184 (360)
Q Consensus 173 ~~g~~l~v~~~~ 184 (360)
+.|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 47
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=131.53 Aligned_cols=85 Identities=26% Similarity=0.619 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.....++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+. |++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ecCCcc
Q 018143 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.+..
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 998653
No 48
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=6.5e-19 Score=142.22 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=108.5
Q ss_pred EEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee-------------------cCCccceecCCCC
Q 018143 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL-------------------SETKNRLFIGNVP 195 (360)
Q Consensus 135 ~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~-------------------~~~~~~l~v~nl~ 195 (360)
++.+..+. .+++|||||+|.+.+.|.+|+..+++....+..+.+.. ..+..+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 45666665 36899999999999999999988775432222222211 1224789999999
Q ss_pred CCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCCCCC
Q 018143 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273 (360)
Q Consensus 196 ~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~ 273 (360)
+.+++++|+.+|++||. |..++++++ ..+++++|||||.|.+.++|.+|+..|++. .+.|+.+.|.|+.+....
T Consensus 80 ~~~~~~~l~~~F~~~G~-v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR-VGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSC-EEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHSTTE--ESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCC-eEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCCC
Confidence 99999999999999998 999999988 568899999999999999999999998764 678999999999876543
No 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.2e-19 Score=131.26 Aligned_cols=84 Identities=26% Similarity=0.596 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..+.++|||+|||+.+|+++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98653
No 50
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.7e-19 Score=133.29 Aligned_cols=86 Identities=33% Similarity=0.488 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 018143 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998654
No 51
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=133.75 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.....++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 99764
No 52
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.7e-19 Score=133.55 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..+++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 53
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=6.1e-20 Score=136.12 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC-eE
Q 018143 105 NGSEVFIGGLPK------DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KT 177 (360)
Q Consensus 105 ~~~~i~v~nlp~------~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g-~~ 177 (360)
..++|||+|||+ ++++++|+.+|++||.|.+|+|++++.||+++|||||+|.+.++|.+|+..|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeecCCc
Q 018143 178 IRCSLSETK 186 (360)
Q Consensus 178 l~v~~~~~~ 186 (360)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998754
No 54
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=132.03 Aligned_cols=83 Identities=30% Similarity=0.544 Sum_probs=79.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV-RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
.+.++|||+|||+.+|+++|+.+|++||.|..+ ++++++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 9764
No 55
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.7e-19 Score=133.69 Aligned_cols=84 Identities=31% Similarity=0.513 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhc------CCccCCe
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH------SKELKGK 176 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~------~~~~~g~ 176 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEeecCCc
Q 018143 177 TIRCSLSETK 186 (360)
Q Consensus 177 ~l~v~~~~~~ 186 (360)
.|+|.++.++
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999999765
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=132.95 Aligned_cols=85 Identities=32% Similarity=0.576 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+.+.++|||+|||+.+|+++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97653
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=7.3e-19 Score=133.98 Aligned_cols=85 Identities=34% Similarity=0.576 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.+++++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 97653
No 58
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=132.87 Aligned_cols=86 Identities=30% Similarity=0.593 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+.+.++|||+|||+++|+++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..|.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 018143 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.+..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987643
No 59
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=8e-19 Score=126.70 Aligned_cols=81 Identities=28% Similarity=0.578 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.....++|||+|||+++|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+. +++..+.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34568899999999999999999999999999999999999999999999999999999999995 58889999999998
Q ss_pred ec
Q 018143 182 LS 183 (360)
Q Consensus 182 ~~ 183 (360)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4e-19 Score=131.36 Aligned_cols=84 Identities=27% Similarity=0.467 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCC---CCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE---SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
.+.++|||+|||+++|+++|+.+|++||.|..|.++.++. |++++|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 6799999999999999999999999999999999999
Q ss_pred eecCCcc
Q 018143 181 SLSETKN 187 (360)
Q Consensus 181 ~~~~~~~ 187 (360)
.++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997653
No 61
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=5.3e-19 Score=134.73 Aligned_cols=84 Identities=31% Similarity=0.563 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..++|||+|||+++|+++|+.+|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCcc
Q 018143 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.++.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8653
No 62
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-19 Score=129.21 Aligned_cols=82 Identities=28% Similarity=0.556 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+.+.++|||+|||+++++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cC
Q 018143 183 SE 184 (360)
Q Consensus 183 ~~ 184 (360)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 63
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=3.1e-19 Score=135.86 Aligned_cols=76 Identities=13% Similarity=0.379 Sum_probs=71.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+++|||+|||+.+|+++|+++|++||.|.+|+|+.++.+.+|||||+|.+.++|.+|+..|||..|+|++|.|.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4689999999999999999999999999999999887666899999999999999999999999999999999763
No 64
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=6e-19 Score=136.84 Aligned_cols=86 Identities=35% Similarity=0.493 Sum_probs=81.2
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
..+.+.++|||+|||+++|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCc
Q 018143 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.++.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 999764
No 65
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=132.11 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+++|+++|+.+|++||.|.+|++++++. |+++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999987 9999999999999999999997 8999999999999987
Q ss_pred CC
Q 018143 184 ET 185 (360)
Q Consensus 184 ~~ 185 (360)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 66
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.8e-19 Score=131.72 Aligned_cols=86 Identities=30% Similarity=0.558 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecC-CCCCCcceEEEEEecCHHHHHHHHHHh-cCCccCCeEEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v 180 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++++ +.+|+++|||||+|.+.++|.+|+..| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346789999999999999999999999999999999999 788999999999999999999999999 999999999999
Q ss_pred eecCCccc
Q 018143 181 SLSETKNR 188 (360)
Q Consensus 181 ~~~~~~~~ 188 (360)
.++.+...
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987543
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=6.4e-19 Score=133.18 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+.++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 754
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=7.9e-19 Score=127.32 Aligned_cols=80 Identities=28% Similarity=0.512 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+.+|+++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999999999999999999999999999 8999999999999999976
Q ss_pred c
Q 018143 186 K 186 (360)
Q Consensus 186 ~ 186 (360)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=9.6e-19 Score=128.51 Aligned_cols=82 Identities=33% Similarity=0.471 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+++++|+++|++||.|..|.++.++. |+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44678999999999999999999999999999999999886 99999999999999999999999999999999999999
Q ss_pred cCC
Q 018143 183 SET 185 (360)
Q Consensus 183 ~~~ 185 (360)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 70
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.1e-19 Score=130.63 Aligned_cols=84 Identities=19% Similarity=0.420 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeE-EEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeE----
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF-EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT---- 177 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~---- 177 (360)
....++|||+|||+++|+++|+.+|++||.|. .|++++++.+|+++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44689999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeecCCc
Q 018143 178 IRCSLSETK 186 (360)
Q Consensus 178 l~v~~~~~~ 186 (360)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998764
No 71
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=129.04 Aligned_cols=75 Identities=19% Similarity=0.369 Sum_probs=68.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhC-CceeCCeeEeEEe
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE-KYEIDGKSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~ln-g~~~~G~~l~v~p 356 (360)
+++|||+|||+.+|+++|+++|++|| .|..|+|+.++.++ +|||||+|.+.++|.+|+..|+ +..|+|++|+|..
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 46899999999999999999999999 89999999887543 9999999999999999999874 5689999999975
No 72
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.8e-18 Score=129.52 Aligned_cols=82 Identities=33% Similarity=0.520 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC---eEEEE
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG---KTIRC 180 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g---~~l~v 180 (360)
...++|||+|||+.+|+++|+.+|++||.|..|.|+.++ +|+++|||||+|.+.++|.+|+..||+..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999988 79999999999999999999999999999998 99999
Q ss_pred eecCCc
Q 018143 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.++.+.
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 999764
No 73
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=129.35 Aligned_cols=82 Identities=29% Similarity=0.521 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+.++|||+|||+.+|+++|+.+|++||.|..|.++.+ +|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46789999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred CCcc
Q 018143 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.+..
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8653
No 74
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=9.6e-19 Score=142.10 Aligned_cols=85 Identities=25% Similarity=0.437 Sum_probs=79.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.+.|.+||..|||..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 148 ~a~~~ 152 (165)
T 1rk8_A 148 WCFVK 152 (165)
T ss_dssp ESEEC
T ss_pred EecCC
Confidence 98753
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.5e-18 Score=129.46 Aligned_cols=82 Identities=23% Similarity=0.498 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++|| |..|.+++++.+|+++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9764
No 76
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=8.1e-19 Score=126.96 Aligned_cols=82 Identities=20% Similarity=0.438 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCC-cceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE-SKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..++|||+|||+++|+++|+.+|++||.|..+.++.+..++. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999887766 8999999999999999999999999999999999998
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 77
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=125.93 Aligned_cols=79 Identities=24% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc--cCCeEEE
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIR 179 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~--~~g~~l~ 179 (360)
..+++++|||+|||+.+|+++|+.+|++||.|.++++++ ++|||||+|.+.++|.+|+..|++.. +.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345789999999999999999999999999999999975 37899999999999999999999876 7899999
Q ss_pred EeecCCc
Q 018143 180 CSLSETK 186 (360)
Q Consensus 180 v~~~~~~ 186 (360)
|.+++++
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999864
No 78
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.8e-18 Score=129.96 Aligned_cols=83 Identities=27% Similarity=0.377 Sum_probs=78.3
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
......++|||+|||+.+|+++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344578999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eecC
Q 018143 181 SLSE 184 (360)
Q Consensus 181 ~~~~ 184 (360)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 79
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.8e-18 Score=121.42 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
.+..|||+||++.+|+++|+.+|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|..|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 578899999999999999999999999999999965 69999999999999999999999999999999999883
No 80
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=1.7e-18 Score=126.38 Aligned_cols=83 Identities=25% Similarity=0.442 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+++|+++|+.+|++||.|..+.++++ +|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999984 689999999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 97653
No 81
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=8.9e-19 Score=131.44 Aligned_cols=85 Identities=29% Similarity=0.592 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc---CCeEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~---~g~~l~ 179 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|+++.++.+|+++|||||+|.+.++|.+|+..||+..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EeecCCcc
Q 018143 180 CSLSETKN 187 (360)
Q Consensus 180 v~~~~~~~ 187 (360)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997654
No 82
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=132.24 Aligned_cols=83 Identities=33% Similarity=0.604 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+++|+++|+.+|++||.|..|.++.+. +|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 83 a~~~ 86 (116)
T 2fy1_A 83 AKKP 86 (116)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 83
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=139.83 Aligned_cols=82 Identities=24% Similarity=0.456 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..++|||+|||+++|+++|+.+|++|| .|..|+++.++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 84
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=8.9e-19 Score=134.13 Aligned_cols=82 Identities=30% Similarity=0.545 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+++|+++|+.+|++||.|..|++++++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 018143 183 SE 184 (360)
Q Consensus 183 ~~ 184 (360)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=4.5e-19 Score=124.18 Aligned_cols=75 Identities=32% Similarity=0.675 Sum_probs=72.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 108 ~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+|||+|||+++|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+. +++..+.|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999997 9999999999999875
No 86
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=130.72 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=71.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|...
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999998887633 999999999999999999999999999999998753
No 87
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=131.91 Aligned_cols=84 Identities=30% Similarity=0.502 Sum_probs=79.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
...++|||+|||+.+|+++|+.+|++||.|. .|+++.++.+|+++|||||+|.+.++|.+|+..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4678999999999999999999999999998 69999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCcc
Q 018143 176 KTIRCSLSETKN 187 (360)
Q Consensus 176 ~~l~v~~~~~~~ 187 (360)
+.|+|.++.+..
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999998653
No 88
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=129.36 Aligned_cols=81 Identities=25% Similarity=0.491 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCC-CCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...++|||+|||+.+|+++|+.+|++|| |..|.++.++.+ |+++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999999988 999999999999999999999 9999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.++
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9764
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=128.60 Aligned_cols=80 Identities=26% Similarity=0.388 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcC--CccCCeEEE
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (360)
.+.+.++|||+|||+.+|+++|+.+|++||.|.+|+++++ +|||||+|.+.++|.+|+..|++ ..+.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567899999999999999999999999999999999864 79999999999999999998864 689999999
Q ss_pred EeecCCcc
Q 018143 180 CSLSETKN 187 (360)
Q Consensus 180 v~~~~~~~ 187 (360)
|.+++++.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99998643
No 90
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=130.05 Aligned_cols=83 Identities=25% Similarity=0.376 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcc-CCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc-cCCeEEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~-~~g~~l~v 180 (360)
+...++|||+|||+++|+++|+.+|++ ||.|..|.++.++ +|+++|||||+|.+.++|.+|+..|++.. +.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred eecCCc
Q 018143 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.++.+.
T Consensus 85 ~~a~~~ 90 (104)
T 2dhg_A 85 SVAIPK 90 (104)
T ss_dssp CBCCCC
T ss_pred EEccCC
Confidence 998754
No 91
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=6.7e-19 Score=129.35 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..++|||+|||+++|+++|+.+|.+||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 018143 184 ET 185 (360)
Q Consensus 184 ~~ 185 (360)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 92
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.8e-18 Score=126.72 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=73.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+.+|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 456899999999999999999999999999999999987767899999999999999999999999999999999864
No 93
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=130.32 Aligned_cols=82 Identities=32% Similarity=0.675 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35889999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred Cc
Q 018143 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
+.
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 94
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9.8e-19 Score=129.25 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|.+||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999998888998899999999999999999999999999999999999999998
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 653
No 95
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=7.9e-19 Score=130.16 Aligned_cols=82 Identities=23% Similarity=0.482 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCC-CCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
....++|||+|||+++|+++|+.+|++|| |..|+++.++ .+|+++|||||+|.+.++|.+|+ .|+|..+.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45689999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99764
No 96
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=130.63 Aligned_cols=84 Identities=26% Similarity=0.524 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+.. ++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87653
No 97
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=129.61 Aligned_cols=84 Identities=29% Similarity=0.457 Sum_probs=77.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCCc
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
++|||+|||+++|+++|+.+|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6899999999999999999999999999999999998653
Q ss_pred ----------------cceecCCCC
Q 018143 187 ----------------NRLFIGNVP 195 (360)
Q Consensus 187 ----------------~~l~v~nl~ 195 (360)
.++||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 468888875
No 98
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.1e-18 Score=129.87 Aligned_cols=83 Identities=31% Similarity=0.527 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|++++++.+|+++|||||+|.+.++|.+|+..+ +..+.|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 446789999999999999999999999999999999999999999999999999999999999865 5899999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.++
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8764
No 99
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=8.4e-19 Score=149.72 Aligned_cols=82 Identities=29% Similarity=0.546 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..++|||+|||+++|+++|+++|++|| .|..|+|++++.+|+++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8753
No 100
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=127.81 Aligned_cols=81 Identities=23% Similarity=0.305 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCC--ccCCeEEEE
Q 018143 104 PNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRC 180 (360)
Q Consensus 104 ~~~~~i~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~--~~~g~~l~v 180 (360)
.++++|||+|||+ .+|+++|+.+|++||.|.+|+|+++ +|||||+|.+.++|.+|+..|++. .|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999999999999864 589999999999999999998865 499999999
Q ss_pred eecCCcccee
Q 018143 181 SLSETKNRLF 190 (360)
Q Consensus 181 ~~~~~~~~l~ 190 (360)
.+++....+.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x4d_A 87 HLSQKYKRIK 96 (102)
T ss_dssp EEECCCTTSS
T ss_pred EECCCCCCCC
Confidence 9998765543
No 101
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=128.32 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=70.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+. +||..|+|+.|.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 346799999999999999999999999999999999887655 9999999999999999999 899999999999976
No 102
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=126.69 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=69.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCc----eeCCeeE
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKY----EIDGKSH 352 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~--v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~----~~~G~~l 352 (360)
.-++|||+|||+.+|+++|+++|++||. |..|++++++.++ ||||||+|.++++|.+|++.|||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3579999999999999999999999995 6689999887644 999999999999999999999996 5999999
Q ss_pred eEEee
Q 018143 353 LHFPV 357 (360)
Q Consensus 353 ~v~p~ 357 (360)
.|.+.
T Consensus 88 ~V~~A 92 (95)
T 2lkz_A 88 GVDFA 92 (95)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 98764
No 103
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-19 Score=124.11 Aligned_cols=76 Identities=33% Similarity=0.556 Sum_probs=73.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
++|||+|||+++|+++|+.+|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..++ ..+.|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999888 9999999999886
No 104
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.8e-18 Score=125.87 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=73.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....++|||+|||..+++++|+++|++||.|..|.|+.+..+.+|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3557899999999999999999999999999999999887667899999999999999999999999999999999875
No 105
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-18 Score=124.85 Aligned_cols=77 Identities=25% Similarity=0.324 Sum_probs=72.4
Q ss_pred cccceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...++|||+|||..+++++|+ .+|++||.|..|+|+.++.+ +|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456799999999999999999 99999999999999988777 8999999999999999999999999999999998
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 86 ~a 87 (96)
T 2dgx_A 86 LA 87 (96)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 106
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=130.94 Aligned_cols=82 Identities=26% Similarity=0.560 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++ .|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4678999999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.+.
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 653
No 107
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=4.3e-18 Score=122.24 Aligned_cols=78 Identities=18% Similarity=0.377 Sum_probs=71.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++.++..+ +|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999998775443 899999999999999999999999999999999863
No 108
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.1e-18 Score=133.61 Aligned_cols=84 Identities=25% Similarity=0.489 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8653
No 109
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.6e-18 Score=125.62 Aligned_cols=83 Identities=23% Similarity=0.489 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|.++.++. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44679999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 97653
No 110
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=5.5e-18 Score=130.88 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+++++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCCccc
Q 018143 183 SETKNR 188 (360)
Q Consensus 183 ~~~~~~ 188 (360)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 976543
No 111
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=123.65 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+++|+++|+++|++| .|..|+++++ .+|+++|||||+|.+.++|.+|+. ||+..|.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 779999999999999999999999 99999999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98764
No 112
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=125.50 Aligned_cols=81 Identities=23% Similarity=0.280 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 104 PNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
.+.++|||+|||+.+++++|+ .+|++||.|..|+++.++.+ +|||||+|.+.++|.+|+..|||..+.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 467899999999999999999 99999999999999998765 88999999999999999999999999999999
Q ss_pred EeecCCcc
Q 018143 180 CSLSETKN 187 (360)
Q Consensus 180 v~~~~~~~ 187 (360)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 113
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=134.70 Aligned_cols=84 Identities=27% Similarity=0.490 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+++|+++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9764
No 114
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=127.31 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+++|+++|+++|++||.+ .|+|+.++ +|+++|||||+|.+.++|.+|| .+|+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 34567899999999999999999999999955 99999998 8999999999999999999999 579999999999998
Q ss_pred ecCC
Q 018143 182 LSET 185 (360)
Q Consensus 182 ~~~~ 185 (360)
++.+
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8764
No 115
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.3e-18 Score=126.07 Aligned_cols=82 Identities=18% Similarity=0.406 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.+++++. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34678999999999999999999999999999999999864 4689999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9764
No 116
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=122.43 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=70.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4567999999999999999999999999999999988753 33 899999999999999999999999999999999864
No 117
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=122.51 Aligned_cols=78 Identities=19% Similarity=0.367 Sum_probs=72.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456899999999999999999999999999999999887643 899999999999999999999999999999999763
No 118
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=2.1e-18 Score=134.96 Aligned_cols=117 Identities=19% Similarity=0.309 Sum_probs=74.7
Q ss_pred EEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 018143 232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK 311 (360)
Q Consensus 232 ~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~ 311 (360)
+.|++|.....+..|+..+++.... ++. ...+..+ .......++|||+|||..+|+++|+++|++||.|..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~--g~~-~~~~~~~------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM--GRG-SMSYGRP------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 76 (135)
T ss_dssp --------------------------------CCSCCS------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCC--CCC-CCCcCCC------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 5677788888888888887764322 211 1122222 223355789999999999999999999999999999
Q ss_pred EEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 312 VVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 312 v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 9999876433 899999999999999999999999999999999864
No 119
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=128.15 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---HhhccCCCeEEEEEecCCCCC---CcceEEEEEecCHHHHHHHHHHhcCCccCCeE
Q 018143 104 PNGSEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKESG---ESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~~~---~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~ 177 (360)
...++|||+|||+.+++++|+ .+|++||.|..|.++++..++ +++|||||+|.+.++|.+|+..||+..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 357899999999999999999 999999999999999887654 56699999999999999999999999999999
Q ss_pred EEEeecCCccce
Q 018143 178 IRCSLSETKNRL 189 (360)
Q Consensus 178 l~v~~~~~~~~l 189 (360)
|+|.++.++...
T Consensus 93 l~V~~a~~k~~~ 104 (111)
T 2cpi_A 93 LKASLGTTKYCS 104 (111)
T ss_dssp EEEESCCCCSCS
T ss_pred EEEEeccccccc
Confidence 999999877643
No 120
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.8e-18 Score=127.75 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..++|||+|||+.+|+++|+.+|.+||.|..|.++.++ +|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999987 5999999999999999999999999999999999999998
Q ss_pred CC
Q 018143 184 ET 185 (360)
Q Consensus 184 ~~ 185 (360)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 121
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.2e-18 Score=125.43 Aligned_cols=83 Identities=31% Similarity=0.582 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999997 57789999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 97653
No 122
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=7.1e-18 Score=135.72 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9754
No 123
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=6.4e-18 Score=118.64 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=66.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+.-|+|+||++.+|+++|+.+|.+||+|.++++... ||||||+|.+.++|.+|++.|||..+.||+|+|..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~----kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN----QGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC----CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 567999999999999999999999999999999774 49999999999999999999999999999999864
No 124
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=9.2e-18 Score=123.45 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=71.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
++++|||+|||..+++++|+++|++||.|..|+|+.++.++ +|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 35799999999999999999999999999999999886533 899999999999999999999999999999999764
No 125
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-19 Score=136.94 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEE--EEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCC----ccCCeEE
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK----ELKGKTI 178 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~--~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~----~~~g~~l 178 (360)
..++|||+|||+++|+++|+.+|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..||+. .+.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 5689999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred EEeecCCcc
Q 018143 179 RCSLSETKN 187 (360)
Q Consensus 179 ~v~~~~~~~ 187 (360)
+|.++.+.+
T Consensus 101 ~V~~a~~~~ 109 (131)
T 2m2b_A 101 NVEFAKGSK 109 (131)
T ss_dssp CCEECCCSC
T ss_pred EEEECCCCC
Confidence 999998754
No 126
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.4e-18 Score=123.45 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=72.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3567899999999999999999999999999999998776543 89999999999999999999999999999999986
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 92 a 92 (95)
T 2cqc_A 92 P 92 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 127
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=2.4e-18 Score=127.41 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=71.7
Q ss_pred ccceEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCC-ee
Q 018143 281 QVKALYVKNIPD------NTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG-KS 351 (360)
Q Consensus 281 ~~~~l~V~nlp~------~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G-~~ 351 (360)
..++|||+|||. .+++++|+++|++||.|..|+|+.++.++ +|||||+|.+.++|.+|+..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999888643 9999999999999999999999999999 99
Q ss_pred EeEEee
Q 018143 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|.|.+.
T Consensus 85 l~V~~a 90 (100)
T 3ns6_A 85 LFLYTM 90 (100)
T ss_dssp CEEEES
T ss_pred EEEEEC
Confidence 999764
No 128
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.3e-18 Score=126.60 Aligned_cols=81 Identities=31% Similarity=0.383 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE-VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...++|||+|||+.+|+++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45789999999999999999999999999987 888888 7899999999999999999999986 99999999999998
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8654
No 129
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=124.58 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=72.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 456899999999999999999999999999999998887655 899999999999999999999999999999999764
No 130
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=5.7e-19 Score=128.34 Aligned_cols=80 Identities=31% Similarity=0.654 Sum_probs=74.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCCc
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
++|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.+ |.+|+..|||..+.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999764
Q ss_pred c
Q 018143 187 N 187 (360)
Q Consensus 187 ~ 187 (360)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 131
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=128.77 Aligned_cols=85 Identities=26% Similarity=0.446 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEe-cCCCCCCcceEEEEEecCHHHHHHHHHHhc--CCccCCeEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLM-KDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~--~~~~~g~~l 178 (360)
+.+.++|||+|||+.+|+++|+.+|.+||. |..+.++ .++.+|+++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 446789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEeecCCcc
Q 018143 179 RCSLSETKN 187 (360)
Q Consensus 179 ~v~~~~~~~ 187 (360)
+|.++.+..
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998654
No 132
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-18 Score=125.18 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=67.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC--CceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~~~G~~l~v~p 356 (360)
.+.++|||+|||+.+|+++|+++|++||.|..|+|+.++ |||||+|.+.++|.+|+..|+ +..|.|++|+|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k----GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 456899999999999999999999999999999998864 999999999999999999886 4789999998865
No 133
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=123.68 Aligned_cols=78 Identities=23% Similarity=0.413 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..|||..|.|++|.|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4568999999999999999999999999999999998873 33 899999999999999999999999999999999875
No 134
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-18 Score=127.91 Aligned_cols=79 Identities=23% Similarity=0.372 Sum_probs=73.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....++|||+|||..+++++|+.+|++||.|..|.|+.++.+.+|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3567899999999999999999999999999999999887666899999999999999999999999999999999864
No 135
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=128.16 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCe-E
Q 018143 105 NGSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-T 177 (360)
Q Consensus 105 ~~~~i~v~nlp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~-~ 177 (360)
..++|||+|||+.+ |+++|+.+|++||.|..|.++ +.+|+++|||||+|.+.++|.+|+..|||..|.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 46799999999999999999999999999999998 9
Q ss_pred EEEeecCCc
Q 018143 178 IRCSLSETK 186 (360)
Q Consensus 178 l~v~~~~~~ 186 (360)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998753
No 136
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=126.70 Aligned_cols=82 Identities=26% Similarity=0.566 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc--------CC
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--------KG 175 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~--------~g 175 (360)
...++|||+|||+.+|+++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+..|||..+ .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 357899999999999999999999999999999999998 899999999999999999999999999999 57
Q ss_pred eEEEEeecCCc
Q 018143 176 KTIRCSLSETK 186 (360)
Q Consensus 176 ~~l~v~~~~~~ 186 (360)
++|.|.++.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999988754
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=124.79 Aligned_cols=85 Identities=35% Similarity=0.561 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..+.++|||+|||+.+|+++|+.+|++||.|..|.+.++ +|||||+|.+.++|.+|+..|++..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346789999999999999999999999999999999753 78999999999999999999999999999999999
Q ss_pred cCCccceecCC
Q 018143 183 SETKNRLFIGN 193 (360)
Q Consensus 183 ~~~~~~l~v~n 193 (360)
+.++..+.+++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99988877765
No 138
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=129.53 Aligned_cols=80 Identities=31% Similarity=0.449 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+++|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 579999999999999999999999999999999999999999999999999999999999 9999999999999999865
Q ss_pred c
Q 018143 186 K 186 (360)
Q Consensus 186 ~ 186 (360)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 139
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=3.3e-18 Score=121.64 Aligned_cols=72 Identities=24% Similarity=0.497 Sum_probs=65.6
Q ss_pred ceEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCe-eEeE
Q 018143 283 KALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK-SHLH 354 (360)
Q Consensus 283 ~~l~V~nlp~~~------t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~-~l~v 354 (360)
++|||+|||..+ ++++|+++|++||.|..|.|++..+..+|||||+|.+.++|.+|+..|||..|+|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 77999999999999999999854333489999999999999999999999999999 8875
No 140
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=123.86 Aligned_cols=78 Identities=19% Similarity=0.380 Sum_probs=72.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999998887555 899999999999999999999999999999999764
No 141
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=124.90 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=72.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.. . +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 55789999999999999999999999999999999988643 3 899999999999999999999999999999999864
No 142
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=1.6e-17 Score=132.75 Aligned_cols=117 Identities=15% Similarity=0.263 Sum_probs=106.1
Q ss_pred CCcceEEEEEecCHHHHHHHHHHh-cCCccCCeEEEEeecCC----------------------ccceecCCCCCCCCHH
Q 018143 145 GESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCSLSET----------------------KNRLFIGNVPKNWTED 201 (360)
Q Consensus 145 ~~~~g~a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~~----------------------~~~l~v~nl~~~~~~~ 201 (360)
...+|+++|+|.+.+.|.+|+..+ |+..+.| .+.+.++.. .++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467999999999999999999999 9999999 999988653 3689999999999999
Q ss_pred HHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecCHHHHHHHHHHHhccCcccCCCCCeeeecCCCC
Q 018143 202 EFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271 (360)
Q Consensus 202 ~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~ 271 (360)
+|+.+|++||. |..++++++ ++|||||.|.+.++|..|+..+++. .+.|+.+.|.|+.+..
T Consensus 89 ~l~~~F~~~G~-i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGP-LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGR--TLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSC-EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSS--CSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCC-EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEcCCCC
Confidence 99999999998 999999875 5899999999999999999999865 5789999999988754
No 143
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=7.3e-18 Score=122.91 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=67.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce--eCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~--~~G~~l~v~p 356 (360)
.++++|||+|||..+|+++|+.+|++||.|.+|++++.+ |||||+|.+.++|.+|+..|||.. |.||+|.|..
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k----g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK----RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 467899999999999999999999999999999998654 999999999999999999999875 7899998864
No 144
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=3.1e-18 Score=133.41 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.+...++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|.+|+. +|+..|.|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999987 9999999999999999999998 99999999999
Q ss_pred EEeecCC
Q 018143 179 RCSLSET 185 (360)
Q Consensus 179 ~v~~~~~ 185 (360)
.|.++.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999854
No 145
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=6.9e-18 Score=133.28 Aligned_cols=81 Identities=33% Similarity=0.604 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..+++++++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 018143 183 S 183 (360)
Q Consensus 183 ~ 183 (360)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 146
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=123.19 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=68.1
Q ss_pred CCEEEEcCCCCCC------CHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCe-EE
Q 018143 106 GSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TI 178 (360)
Q Consensus 106 ~~~i~v~nlp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~-~l 178 (360)
+++|||+|||+.+ |+++|+.+|++||.|..+.++ +.+|+++|||||+|.+.++|.+|+..|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999987 46799999999999999999999999999999999 88
Q ss_pred EE
Q 018143 179 RC 180 (360)
Q Consensus 179 ~v 180 (360)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 147
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=8.7e-18 Score=120.06 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=69.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+.+|||+|||..+++++|+.+|++||.|..|.++.++..+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 3689999999999999999999999999999998775433 899999999999999999999999999999999864
No 148
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=125.83 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+++|+++|+.+|++||.|..|.+..+ ++++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 97643
No 149
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=130.29 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
+...++|||+|||+.+|+++|+.+|++||.| ..|+|+.++ +|+++|||||+|.+.++|.+||.. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3467899999999999999999999999999 899999998 899999999999999999999976 9999999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 150
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=129.01 Aligned_cols=81 Identities=28% Similarity=0.514 Sum_probs=77.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+++|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+.. ++..|.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 58999999999999999999999999999999999999999999999999999999999987 99999999999999986
Q ss_pred cc
Q 018143 186 KN 187 (360)
Q Consensus 186 ~~ 187 (360)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 151
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=127.26 Aligned_cols=82 Identities=23% Similarity=0.499 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++.++ +.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999885 45899999999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 152
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=122.31 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhc--CCccCCeEEEEe
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~--~~~~~g~~l~v~ 181 (360)
+++++|||+|||+.+|+++|+.+|++||.|..|.++++ +|||||+|.+.++|.+|+..|+ +..+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998864 7999999999999999999774 677999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.++
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99754
No 153
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=124.44 Aligned_cols=78 Identities=18% Similarity=0.377 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 567899999999999999999999999999999998875533 899999999999999999999999999999999864
No 154
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=122.60 Aligned_cols=78 Identities=21% Similarity=0.450 Sum_probs=72.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++++|||+|||..+++++|+++|++||.|..|.++.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456899999999999999999999999999999998876533 899999999999999999999999999999999875
No 155
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=7.9e-18 Score=129.57 Aligned_cols=82 Identities=21% Similarity=0.411 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.++.++|||+|||+.+++++|+ .+|++||.|..|.+.+ +|+++|||||+|.+.++|..|+..|||..+.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3467899999999999999876 6999999999998854 58899999999999999999999999999999999
Q ss_pred EEeecCCcc
Q 018143 179 RCSLSETKN 187 (360)
Q Consensus 179 ~v~~~~~~~ 187 (360)
+|.++.++.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998654
No 156
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=124.65 Aligned_cols=78 Identities=26% Similarity=0.433 Sum_probs=72.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 456899999999999999999999999999999999876533 899999999999999999999999999999999864
No 157
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=124.09 Aligned_cols=79 Identities=22% Similarity=0.415 Sum_probs=72.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999876543 89999999999999999999999999999999987
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 89 a 89 (102)
T 1x5s_A 89 A 89 (102)
T ss_dssp E
T ss_pred C
Confidence 5
No 158
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.4e-18 Score=126.73 Aligned_cols=84 Identities=26% Similarity=0.429 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcC--CccCCeEEE
Q 018143 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (360)
..++++|||+|||++ +|+++|+.+|++||.|.+|+|++ ++|||||+|.+.++|.+|+..|++ ..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346889999999998 99999999999999999999964 479999999999999999998864 569999999
Q ss_pred EeecCCccceecC
Q 018143 180 CSLSETKNRLFIG 192 (360)
Q Consensus 180 v~~~~~~~~l~v~ 192 (360)
|.+++....+..+
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999887776554
No 159
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=126.35 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhc--CCccCCeEEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~--~~~~~g~~l~v 180 (360)
.+++++|||+|||+++|+++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..++ +..+.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456789999999999999999999999999999999875 7999999999999999999887 46899999999
Q ss_pred eecCCc
Q 018143 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.+++++
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 999764
No 160
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=2.1e-17 Score=124.81 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=72.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999998876433 899999999999999999999999999999999864
No 161
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=5.3e-18 Score=129.51 Aligned_cols=81 Identities=26% Similarity=0.309 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
+...++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||. +|+..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999998 89999999987 9999999999999999999998 999999999999
Q ss_pred EeecCC
Q 018143 180 CSLSET 185 (360)
Q Consensus 180 v~~~~~ 185 (360)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998853
No 162
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=1.8e-18 Score=135.27 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.+.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 163
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=7.8e-18 Score=130.05 Aligned_cols=81 Identities=22% Similarity=0.489 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+++|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999999999999999999999999999999999999999 799999999999999987
Q ss_pred Cc
Q 018143 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 164
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=9.6e-18 Score=136.15 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=71.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++.+|+.+|++||.|..|.|+.++.+. +|||||+|.+..+|.+||..|||..|.|+.|.|.+.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456789999999999999999999999999999998875443 899999999999999999999999999999999875
Q ss_pred e
Q 018143 358 F 358 (360)
Q Consensus 358 ~ 358 (360)
.
T Consensus 150 ~ 150 (165)
T 1rk8_A 150 F 150 (165)
T ss_dssp E
T ss_pred c
Confidence 3
No 165
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.2e-17 Score=120.77 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..++|||+|||+.+++++|+.+|++| .|..+++. +++|||||+|.+.++|.+|+..||+..+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 67899999999999999999999999999999999999
Q ss_pred CCccceecCCC
Q 018143 184 ETKNRLFIGNV 194 (360)
Q Consensus 184 ~~~~~l~v~nl 194 (360)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 98888888764
No 166
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=4.1e-17 Score=125.94 Aligned_cols=81 Identities=27% Similarity=0.354 Sum_probs=74.3
Q ss_pred cccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 278 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.....++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34567899999999999999999999999999999998887554 89999999999999999999999999999999987
Q ss_pred ee
Q 018143 357 VF 358 (360)
Q Consensus 357 ~~ 358 (360)
..
T Consensus 111 a~ 112 (124)
T 2kt5_A 111 VA 112 (124)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 167
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=123.40 Aligned_cols=78 Identities=27% Similarity=0.487 Sum_probs=71.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCC-C-CCC-CCeEEEEeCCHHHHHHHHHhh-CCceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-K-SGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-~-~~~-kg~afV~F~~~~~A~~A~~~l-ng~~~~G~~l~v~ 355 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.+ + .+. +|||||+|.+.++|.+|+..| ||..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 55789999999999999999999999999999999987 3 233 899999999999999999999 9999999999998
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 93 ~a 94 (107)
T 2cph_A 93 WA 94 (107)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 168
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=122.12 Aligned_cols=77 Identities=31% Similarity=0.473 Sum_probs=71.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++... +|||||+|.+.++|.+|+. |||..|.|+.|.|.+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999876533 8999999999999999999 9999999999999874
No 169
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=123.19 Aligned_cols=81 Identities=28% Similarity=0.524 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.| +++.+ .+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4468999999999999999999999999987 55555 6799999999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 97653
No 170
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=122.77 Aligned_cols=78 Identities=24% Similarity=0.271 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCC--ccCCeEEEEe
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~--~~~g~~l~v~ 181 (360)
++.++|||+|||+.+|+++|+.+|++||.|..|.+++. +|||||+|.+.++|.+|+..|++. .+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999999763 789999999999999999988764 5999999999
Q ss_pred ecCCcc
Q 018143 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.++.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998643
No 171
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=122.49 Aligned_cols=78 Identities=10% Similarity=0.198 Sum_probs=71.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+.++|||+|||..+++++|+.+|++||.|..| +|+.++.. . +|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 99887443 3 89999999999999999999999999999999987
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 83 a 83 (96)
T 1x5t_A 83 A 83 (96)
T ss_dssp S
T ss_pred e
Confidence 4
No 172
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=123.50 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=72.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhC------CceeCCee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE------KYEIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~ln------g~~~~G~~ 351 (360)
.+.++|||+|||..+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|| |..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999886543 8999999999999999999999 99999999
Q ss_pred EeEEee
Q 018143 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|.|.+.
T Consensus 93 l~v~~a 98 (111)
T 1x4h_A 93 LKVDLA 98 (111)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999864
No 173
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.1e-18 Score=126.27 Aligned_cols=77 Identities=26% Similarity=0.339 Sum_probs=72.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+++|+++|+++|++| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+|+..|.||.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999876 999999999999999999999 6899999999999988864
No 174
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.6e-17 Score=122.21 Aligned_cols=82 Identities=24% Similarity=0.467 Sum_probs=74.9
Q ss_pred hhhcCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeE
Q 018143 98 QLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (360)
Q Consensus 98 ~~~~~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~ 177 (360)
.....++..++|||+|||+++|+++|+.+|++||.|..+++. +++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 19 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 19 IIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp HHTTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred hhhcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344556678999999999999999999999999999999997 45899999999999999999999999999999
Q ss_pred EEEeecCC
Q 018143 178 IRCSLSET 185 (360)
Q Consensus 178 l~v~~~~~ 185 (360)
|+|.++++
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99999875
No 175
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=2.1e-18 Score=120.71 Aligned_cols=75 Identities=25% Similarity=0.539 Sum_probs=71.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 108 ~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+|||+|||+++|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+. +++..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999997 5899999999999875
No 176
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=3.2e-18 Score=124.24 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=67.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+|||+|||..+|+++|+++|++|| .|..|+++.++.+ . +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999887643 3 999999999999999999999999999999999764
No 177
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=123.90 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=69.7
Q ss_pred cccceEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCe-eE
Q 018143 280 SQVKALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK-SH 352 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~------t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~-~l 352 (360)
...++|||+|||..+ |+++|+.+|++||.|..|.|+...+..+|||||+|.+.++|.+|+..|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346799999999999 78999999999999999999843333389999999999999999999999999998 99
Q ss_pred eEEee
Q 018143 353 LHFPV 357 (360)
Q Consensus 353 ~v~p~ 357 (360)
.|.+.
T Consensus 93 ~V~~a 97 (105)
T 2nlw_A 93 RVNLF 97 (105)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 98764
No 178
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=124.31 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=72.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456899999999999999999999999999999998776533 899999999999999999999999999999999864
No 179
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=123.16 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=67.7
Q ss_pred cccceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc--eeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY--EIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~--~~~G~~l~v~p 356 (360)
.++++|||+|||+ .+|+++|+.+|++||.|..|+|++++ |||||+|.+.++|.+|+..||+. .|.||+|+|..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 4578999999999 99999999999999999999998765 89999999999999999999864 59999999875
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 89 a 89 (102)
T 1x4d_A 89 S 89 (102)
T ss_dssp E
T ss_pred C
Confidence 4
No 180
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=122.74 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=71.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
.+.++|||+|||..+++++|+++|++||.|.. |+++.++.+ . +|||||+|.+.++|.+|+..|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 55789999999999999999999999999999 998887543 3 8999999999999999999999999999
Q ss_pred eeEeEEee
Q 018143 350 KSHLHFPV 357 (360)
Q Consensus 350 ~~l~v~p~ 357 (360)
+.|+|...
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999764
No 181
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-18 Score=132.23 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..+.++.+..+|+++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467899999999999999999999999999887777777789999999999999999999998 999999999999999
Q ss_pred cCC
Q 018143 183 SET 185 (360)
Q Consensus 183 ~~~ 185 (360)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 182
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=119.52 Aligned_cols=77 Identities=19% Similarity=0.399 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC---CCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG---KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~---~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+++++|+.+|++||.|..|.|+.+..+ .+|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3579999999999999999999999999999999877642 3799999999999999999999999999999999875
No 183
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=123.87 Aligned_cols=78 Identities=19% Similarity=0.379 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.. . +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45789999999999999999999999999999999887643 3 899999999999999999999999999999999864
No 184
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=2.2e-17 Score=123.59 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=72.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCC---eeEeEE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDG---KSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G---~~l~v~ 355 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 457899999999999999999999999999999999887655 8999999999999999999999999998 999997
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 93 ~a 94 (105)
T 2dnh_A 93 FA 94 (105)
T ss_dssp ES
T ss_pred EC
Confidence 64
No 185
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=123.05 Aligned_cols=76 Identities=12% Similarity=0.238 Sum_probs=70.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||+.+|+++|+++|+.| .|..|+|+.++.++ +|||||+|.+.++|.+|| .||+..|+||.|.|.+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 89999999887766 999999999999999999 69999999999999875
No 186
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=2.9e-17 Score=125.02 Aligned_cols=78 Identities=19% Similarity=0.332 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4578999999999999999999999999999999988753 33 899999999999999999999999999999999874
No 187
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=119.06 Aligned_cols=77 Identities=35% Similarity=0.628 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+.+.++|||+|||+++|+++|+.+|++||.|..+.++ +|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4578999999999999999999999999999999997 57999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 97653
No 188
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=124.69 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999998776543 899999999999999999999999999999999864
No 189
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=8.6e-18 Score=123.88 Aligned_cols=83 Identities=18% Similarity=0.385 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.+++++|||+|||+++++++|+ .+|++||.|..|.+.+ +|+++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4578999999999999999999 9999999999999874 47889999999999999999999999999999999
Q ss_pred EEeecCCccc
Q 018143 179 RCSLSETKNR 188 (360)
Q Consensus 179 ~v~~~~~~~~ 188 (360)
+|.++.+...
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987543
No 190
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=1.3e-17 Score=121.65 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=71.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.+....+|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999998753333899999999999999999999999999999998764
No 191
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.2e-17 Score=121.94 Aligned_cols=77 Identities=21% Similarity=0.380 Sum_probs=70.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+|+++|+++|++||.|..|.|+.+.. .+|||||+|.+.++|.+|+..||+..|.|+.|.|.+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4568999999999999999999999999999999976532 4799999999999999999999999999999999764
No 192
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.6e-17 Score=123.62 Aligned_cols=78 Identities=27% Similarity=0.364 Sum_probs=72.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|...
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 557899999999999999999999999999999998887555 899999999999999999999999999999999864
No 193
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=120.28 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=67.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC--CceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~~~G~~l~v~p~ 357 (360)
.++++|||+|||..+++++|+.+|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|+ +..+.|++|.|...
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 46789999999999999999999999999999999876 4999999999999999999874 67899999998753
No 194
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=121.70 Aligned_cols=82 Identities=32% Similarity=0.573 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+++|+++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45689999999999999999999999885 677888888899999999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98653
No 195
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=3.5e-17 Score=122.70 Aligned_cols=78 Identities=23% Similarity=0.397 Sum_probs=71.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCcee---CCeeEeE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEI---DGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~---~G~~l~v 354 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 456899999999999999999999999999999999886533 89999999999999999999999988 8999999
Q ss_pred Eee
Q 018143 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
.+.
T Consensus 91 ~~a 93 (106)
T 2dgp_A 91 KPA 93 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 875
No 196
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5e-17 Score=123.52 Aligned_cols=77 Identities=10% Similarity=0.287 Sum_probs=71.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+ .|||..|.|+.|.|.+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 456899999999999999999999999999999999887633 899999999999999999 99999999999999864
No 197
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=2.6e-17 Score=125.32 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=71.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.. . +|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999887643 3 899999999999999999999999999999999764
No 198
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=123.30 Aligned_cols=77 Identities=27% Similarity=0.440 Sum_probs=71.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+|+++|+++|++||.|..|.|+.+ .+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46789999999999999999999999999999999887 444 899999999999999999999999999999999864
No 199
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-18 Score=127.69 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
+...++|||+|||+++|+++|+.+|+.||. |..|+|+.++. |+++|||||+|.+.++|.+|+. +++..++|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999987 9999999999999999999998 999999999999
Q ss_pred EeecCC
Q 018143 180 CSLSET 185 (360)
Q Consensus 180 v~~~~~ 185 (360)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998864
No 200
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-17 Score=120.18 Aligned_cols=79 Identities=18% Similarity=0.370 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccC--CeEEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--GKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~--g~~l~v 180 (360)
+.+.++|||+|||+++|+++|+.+|++||.|..|.+... +|||||+|.+.++|.+|+..||+..+. |++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 446789999999999999999999999999999999753 789999999999999999999999999 999999
Q ss_pred eecCCcc
Q 018143 181 SLSETKN 187 (360)
Q Consensus 181 ~~~~~~~ 187 (360)
.++.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998653
No 201
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=123.20 Aligned_cols=78 Identities=27% Similarity=0.446 Sum_probs=71.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC--C---CCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--G---KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~--~---~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++. + .+|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3467999999999999999999999999999999987654 2 2899999999999999999999999999999999
Q ss_pred Eee
Q 018143 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
.+.
T Consensus 83 ~~a 85 (98)
T 2cpf_A 83 RIS 85 (98)
T ss_dssp ECS
T ss_pred EEc
Confidence 864
No 202
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=125.23 Aligned_cols=78 Identities=23% Similarity=0.449 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 346799999999999999999999999999999999887555 899999999999999999999999999999999764
No 203
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=5.2e-17 Score=119.44 Aligned_cols=78 Identities=26% Similarity=0.463 Sum_probs=71.5
Q ss_pred cCCCCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 101 ALPPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 101 ~~~~~~~~i~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
..++..++|||+|||+ ++++++|+.+|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456789999999998 99999999999999999999983 78999999999999999999999999999999
Q ss_pred EeecCCc
Q 018143 180 CSLSETK 186 (360)
Q Consensus 180 v~~~~~~ 186 (360)
|.++.++
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998764
No 204
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=4e-17 Score=124.84 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=71.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|+.|+|.+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45689999999999999999999999999999999887643 3 89999999999999999999999999999999876
No 205
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=3.7e-17 Score=117.90 Aligned_cols=76 Identities=22% Similarity=0.425 Sum_probs=69.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+. +++..|+|+.|.|++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 45689999999999999999999999999999999877653 3 8999999999999999996 588899999999975
No 206
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.4e-17 Score=116.46 Aligned_cols=72 Identities=24% Similarity=0.401 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+|||+|||..+++++|+++|++||.|..|.++.++.+ . +|||||+|.+.++|.+|+. |||..|+|++|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 5899999999999999999999999999999887643 3 8999999999999999998 999999999999976
No 207
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=3.1e-17 Score=118.83 Aligned_cols=76 Identities=20% Similarity=0.447 Sum_probs=69.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+++++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+ .|||..|.|+.|.|.+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 457999999999999999999999999999999987753 33 899999999999999999 89999999999999874
No 208
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=123.04 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=69.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+..
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG----GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS----SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34679999999999999999999999999999999864 4899999999999999999999999999999998753
No 209
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=123.63 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=72.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 456899999999999999999999999999999998887665 899999999999999999999999999999999754
No 210
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=2.3e-17 Score=127.84 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=72.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|.|.+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 557899999999999999999999999999999998876533 899999999999999999999999999999998764
No 211
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=122.63 Aligned_cols=81 Identities=25% Similarity=0.609 Sum_probs=75.2
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
..+...++|||+|||+.+|+++|+.+|++||.|..|.++.+ +|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999875 789999999999999999999999999999999
Q ss_pred eecCCcc
Q 018143 181 SLSETKN 187 (360)
Q Consensus 181 ~~~~~~~ 187 (360)
.++.+..
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4g_A 94 YWGKESP 100 (109)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9998754
No 212
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.7e-17 Score=124.46 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=72.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 101 ~~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
..++..++|||+|||+++|+++|+++|++|| .|..+.+.. ++++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3456788999999999999999999999999 899998853 35799999999999999999999999999999999
Q ss_pred EeecCC
Q 018143 180 CSLSET 185 (360)
Q Consensus 180 v~~~~~ 185 (360)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999864
No 213
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.5e-17 Score=120.75 Aligned_cols=76 Identities=22% Similarity=0.391 Sum_probs=70.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC--C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~--~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+.++|||+|||..+++++|+.+|++|| |..|.|+.++.. . +|||||+|.+.++|.+|+ .|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999988753 3 899999999999999999 9999999999999986
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 91 a 91 (104)
T 1wi8_A 91 A 91 (104)
T ss_dssp C
T ss_pred c
Confidence 4
No 214
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=117.37 Aligned_cols=76 Identities=18% Similarity=0.410 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHh-cCCccCCeEEEEe
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v~ 181 (360)
....++|||+|||+.+|+++|+.+|++||.|..+.+++ ++|||||+|.+.++|.+|+..| ++..+.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34678999999999999999999999999999999986 3789999999999999999988 9999999999999
Q ss_pred ecC
Q 018143 182 LSE 184 (360)
Q Consensus 182 ~~~ 184 (360)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 215
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-18 Score=128.39 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+++|+++|+.+|++||.|.. .++.+..+|+++|||||+|.+.++|.+|++ ||+..+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999887 677777789999999999999999999998 9999999999999999
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 216
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=123.27 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=68.2
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC--CCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~--~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
....++|||+|||..+++++|+++|++|| |..|+|+.++ .+. +|||||+|.+.++|.+|+ .|||..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35678999999999999999999999999 9999999886 344 999999999999999999 899999999999987
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 94 ~a 95 (100)
T 2j76_E 94 VA 95 (100)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 217
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6e-17 Score=121.72 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC-----eE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-----KT 177 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g-----~~ 177 (360)
+...++|||+|||+++|+++|+.+|++||.|..|.|+.+ |||||+|.+.++|.+|+..||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346789999999999999999999999999999999875 899999999999999999999999999 99
Q ss_pred EEEeecCCcc
Q 018143 178 IRCSLSETKN 187 (360)
Q Consensus 178 l~v~~~~~~~ 187 (360)
|+|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998643
No 218
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.9e-18 Score=121.15 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=70.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 456899999999999999999999999999999998876433 89999999999999999999999999999988753
No 219
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=121.18 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=67.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc--eeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY--EIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~--~~~G~~l~v~p~ 357 (360)
.++++|||+|||..+++++|+.+|++||.|..|.|+++ ||||||+|.+.++|.+|+..||+. .|.|++|.|.+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45789999999999999999999999999999999875 499999999999999999998764 599999998753
No 220
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=116.59 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=69.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhh-CCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l-ng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++.++ |||||+|.+.++|.+|+..| ||..|.|++|.|.+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k----g~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ----QCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG----TEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC----CEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 456899999999999999999999999999999998754 99999999999999999999 999999999999763
No 221
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=5.7e-17 Score=121.59 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=68.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||+.+++++|+++|++|| .|..+.++... .+|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~--~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD--FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS--SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC--CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 357999999999999999999999999 89999997542 4699999999999999999999999999999999763
No 222
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=123.93 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=71.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||+.+|+++|+++|+.||.| ..|+|+.++.+. +|||||+|.+.++|.+||.. ||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456899999999999999999999999999 889998888655 99999999999999999997 999999999999875
No 223
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=114.54 Aligned_cols=80 Identities=20% Similarity=0.372 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHH----HHHhhccCC-CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 018143 104 PNGSEVFIGGLPKDASEED----LRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~----l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
+..+.|||+|||+.+++++ |+.+|.+|| .|..| || |+|||.|.+.++|.+|++.|+|..+.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3344499999999999988 458999995 99988 34 999999999999999999999999999999
Q ss_pred EEeecCCccceecCC
Q 018143 179 RCSLSETKNRLFIGN 193 (360)
Q Consensus 179 ~v~~~~~~~~l~v~n 193 (360)
+|.+|+.++.++...
T Consensus 77 ~v~~A~~~sd~~~~~ 91 (96)
T 2diu_A 77 IVSFTPKNRELCETS 91 (96)
T ss_dssp EEESSCCSCCCCCCC
T ss_pred EEEecCCCcceeEec
Confidence 999999887776543
No 224
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=116.89 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=69.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
++|||+|||..+++++|+++|++||.|..|.++.++.++ +|||||+|.+.++|.+|+..++ ..++|++|.|.+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 479999999999999999999999999999998876433 8999999999999999999999 99999999998753
No 225
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.8e-17 Score=122.58 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
...++|||+|||..+++++|+++|++||.|. .|+|+.++.. . +|||||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4568999999999999999999999999999 6999887543 3 8999999999999999999999999999
Q ss_pred eeEeEEee
Q 018143 350 KSHLHFPV 357 (360)
Q Consensus 350 ~~l~v~p~ 357 (360)
+.|+|.+.
T Consensus 93 ~~l~V~~a 100 (113)
T 2cpe_A 93 SKLKVSLA 100 (113)
T ss_dssp EECEEECS
T ss_pred CEEEEEEC
Confidence 99999764
No 226
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6e-17 Score=120.83 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=70.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||+.+|+++|+++|++||.|.. |+|+.+..+. +|||||+|.+.++|.+|+.. |+..|+||.|.|.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45689999999999999999999999999987 8888876555 99999999999999999997 999999999999775
No 227
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.4e-17 Score=123.54 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=71.9
Q ss_pred CEEEEcCC----CCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecC----HHH----HHHHHH--HhcCCc
Q 018143 107 SEVFIGGL----PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS----KEF----AKKAID--ELHSKE 172 (360)
Q Consensus 107 ~~i~v~nl----p~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~----~~~----a~~a~~--~l~~~~ 172 (360)
+.|||+|| |+.+++..|+++|++||.|.+|.++.++.||+++|||||+|.+ +.. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 323 788887 689999
Q ss_pred cCCeEEEEeecCC
Q 018143 173 LKGKTIRCSLSET 185 (360)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (360)
|.|++|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 228
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=122.00 Aligned_cols=77 Identities=23% Similarity=0.483 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..||+ .|.|+.|.|.+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 456899999999999999999999999999999999886533 89999999999999999999999 899999999875
No 229
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=6.2e-18 Score=157.65 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=71.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.+. +|||||+|.+.++|.+||..|||..|.|+.|.|.+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999998875433 899999999999999999999999999999999865
No 230
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=126.21 Aligned_cols=79 Identities=19% Similarity=0.387 Sum_probs=72.4
Q ss_pred cccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 278 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...+.++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33567899999999999999999999999999999999885433 8999999999999999999999999999999987
Q ss_pred e
Q 018143 356 P 356 (360)
Q Consensus 356 p 356 (360)
.
T Consensus 139 ~ 139 (140)
T 2ku7_A 139 L 139 (140)
T ss_dssp C
T ss_pred e
Confidence 5
No 231
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=121.03 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=71.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCee-EEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCee----E
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKS----H 352 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~----l 352 (360)
...++|||+|||..+++++|+++|++||.|. .|+|+.++... +|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 99998876433 899999999999999999999999999999 7
Q ss_pred eEEee
Q 018143 353 LHFPV 357 (360)
Q Consensus 353 ~v~p~ 357 (360)
+|.+.
T Consensus 87 ~v~~a 91 (99)
T 2div_A 87 KLNYA 91 (99)
T ss_dssp CEEET
T ss_pred EEeec
Confidence 77653
No 232
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=127.29 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCe----EEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
....++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+||.. |+..|.||.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3467899999999999999999999999975 689999884 799999999999999999999975 9999999999
Q ss_pred EEeecC
Q 018143 179 RCSLSE 184 (360)
Q Consensus 179 ~v~~~~ 184 (360)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 998874
No 233
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=120.85 Aligned_cols=79 Identities=28% Similarity=0.485 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|. +.++. ++++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999996 66654 577999999999999999999999999999999999999
Q ss_pred CCcc
Q 018143 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 234
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=6.3e-17 Score=120.57 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=69.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++|| |..|+|+.++.+. +|||||+|.+.++|.+|+ .|||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999997 9999998887533 899999999999999999 89999999999999864
No 235
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=6.7e-17 Score=124.36 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=68.1
Q ss_pred cccceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++++|||+|||..+++++|+ .+|++||.|..|.+... ...+|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 456899999999999999876 69999999999988652 2238999999999999999999999999999999987
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 106 ~a 107 (127)
T 2a3j_A 106 FS 107 (127)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 236
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=122.34 Aligned_cols=78 Identities=12% Similarity=0.239 Sum_probs=72.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCce-eCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~-~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~-~~G~~l~v~p 356 (360)
.+.++|||+|||..+|+++|+.+|++ ||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||.. |.|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45689999999999999999999999 9999999998887555 8999999999999999999999999 9999999876
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 87 a 87 (104)
T 2dhg_A 87 A 87 (104)
T ss_dssp C
T ss_pred c
Confidence 4
No 237
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=123.60 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=67.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC--ceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng--~~~~G~~l~v~p~ 357 (360)
.++++|||+|||+.+|+++|+++|++||.|..|+|+.++ |||||+|.+.++|.+|+..|++ ..|.|++|.|...
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k----G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG----TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----CEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 456899999999999999999999999999999998764 9999999999999999999984 6899999998753
No 238
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.8e-18 Score=128.25 Aligned_cols=80 Identities=25% Similarity=0.450 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCe----EEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
.+.++|||+|||+.+|+++|+.+|++||.| ..+.+. +|+++|||||+|.+.++|.+|+..||+..|.|+.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 467899999999999999999999999998 455444 689999999999999999999999999999999999
Q ss_pred EeecCCcc
Q 018143 180 CSLSETKN 187 (360)
Q Consensus 180 v~~~~~~~ 187 (360)
|.++.+..
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 99997643
No 239
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=129.77 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=70.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..++|||+|||+.+|+++|+++|++|| .|..|+|+.++.++ +|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999998876433 89999999999999999999999999999999987
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 5
No 240
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=123.18 Aligned_cols=78 Identities=22% Similarity=0.468 Sum_probs=71.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++..+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 456899999999999999999999999999999998775433 899999999999999999999999999999999864
No 241
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-17 Score=121.42 Aligned_cols=78 Identities=23% Similarity=0.450 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+|+++|+.+|++||.|..+ ..+|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 57899999999999999999999999988766 3468999999999999999999999999999999999999997
Q ss_pred Ccc
Q 018143 185 TKN 187 (360)
Q Consensus 185 ~~~ 187 (360)
++.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 242
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.6e-17 Score=122.98 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=71.1
Q ss_pred cccceEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEcCCCCCC-----CCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018143 280 SQVKALYVKNIPDNTSTEKIK---ELFQRHGEVTKVVMPPGKSG-----KRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~---~~f~~~G~v~~v~i~~~~~~-----~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
...++|||+|||..+++++|+ ++|++||.|..|.|+.++.+ .+|||||+|.+.++|.+|+..|||..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346799999999999999999 99999999999999887652 2699999999999999999999999999999
Q ss_pred EeEEee
Q 018143 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|.|.+.
T Consensus 93 l~V~~a 98 (111)
T 2cpi_A 93 LKASLG 98 (111)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 999764
No 243
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=8.4e-17 Score=120.72 Aligned_cols=77 Identities=31% Similarity=0.575 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.....++|||+|||+++|+++|+.+|++||.|..|.++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999999999997 6899999999999999999999999999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 99764
No 244
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=117.19 Aligned_cols=76 Identities=12% Similarity=0.269 Sum_probs=70.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++| .|..|+|+.+..+. +|||||+|.+.++|.+|+. |||..|.|+.|.|.+.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 456899999999999999999999999 89999998886555 8999999999999999999 9999999999999875
No 245
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=4.9e-17 Score=133.08 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+.+++++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCccc
Q 018143 182 LSETKNR 188 (360)
Q Consensus 182 ~~~~~~~ 188 (360)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9976543
No 246
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=3.9e-17 Score=124.66 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=71.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.++.+. +|||||+|.+.++|.+||. |||..|+||.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45689999999999999999999999999 8899998877766 9999999999999999999 99999999999998
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 94 ~a 95 (118)
T 2db1_A 94 KS 95 (118)
T ss_dssp EE
T ss_pred EC
Confidence 75
No 247
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=116.93 Aligned_cols=72 Identities=22% Similarity=0.533 Sum_probs=67.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456899999999999999999999999999999998 389999999999999999999999999999999864
No 248
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-17 Score=123.73 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+|+++|+.+|++||.|..|.+++ ++|||||+|.+.++|.+|+..|||..+.|++|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998864 57899999999999999999999999999999999986
Q ss_pred C
Q 018143 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 249
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.9e-17 Score=119.42 Aligned_cols=74 Identities=27% Similarity=0.447 Sum_probs=69.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+.+|++||.|..|.++.++ |||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k----g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK----GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT----TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC----CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 456899999999999999999999999999999998764 99999999999999999999999999999999864
No 250
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-18 Score=132.33 Aligned_cols=83 Identities=33% Similarity=0.523 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
.+.++|||+|||+.+|+++|+.+|++||.|.. |.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred eEEEEeecCCc
Q 018143 176 KTIRCSLSETK 186 (360)
Q Consensus 176 ~~l~v~~~~~~ 186 (360)
+.|+|.++.++
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998754
No 251
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.4e-16 Score=117.09 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=67.9
Q ss_pred ccccceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 279 ASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 279 ~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...+++|||+|||. .+++++|+.+|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 35678999999998 99999999999999999999994 489999999999999999999999999999999764
No 252
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1.1e-16 Score=123.89 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=71.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+|+++|+.+|++||.|..|.|+.++... +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 446799999999999999999999999999999998876433 899999999999999999999999999999999865
No 253
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=116.25 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+.+|+++|+.+|++||.|..|.+++ +||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345789999999999999999999999999999999973 499999999999999999999999999999999
Q ss_pred ecCCcc
Q 018143 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998654
No 254
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=1.4e-16 Score=119.73 Aligned_cols=78 Identities=22% Similarity=0.406 Sum_probs=69.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|+.||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..+ |..|+|+.|.|.+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 45689999999999999999999999999999999988653 3 999999999999999999976 59999999999875
Q ss_pred e
Q 018143 358 F 358 (360)
Q Consensus 358 ~ 358 (360)
.
T Consensus 102 ~ 102 (109)
T 2rs2_A 102 F 102 (109)
T ss_dssp C
T ss_pred c
Confidence 3
No 255
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=1.2e-16 Score=121.66 Aligned_cols=77 Identities=16% Similarity=0.357 Sum_probs=70.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++++|||+|||..+++++|+.+|++||.|..|.|+.+... +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET-RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT-TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC-CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45679999999999999999999999999999999865432 799999999999999999999999999999999764
No 256
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2e-16 Score=116.46 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=68.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC--CeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID--GKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~--G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|||..|. |+.|+|.+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 44689999999999999999999999999999999876 489999999999999999999999999 999999764
No 257
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=1.6e-17 Score=123.67 Aligned_cols=79 Identities=29% Similarity=0.542 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+++|+++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 56899999999999999999999999999999999998 89999999999999999999997 9999999999998886
Q ss_pred Cc
Q 018143 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
+.
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 258
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=3.7e-17 Score=127.40 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=70.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCc----eeCCee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--VVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKY----EIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~----~~~G~~ 351 (360)
...++|||+|||+.+|+++|+++|++||.|.. |+|+.++. +. ||||||+|.+. +|.+|+..|||. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 55689999999999999999999999999976 99998874 33 99999999999 999999999999 999999
Q ss_pred EeEEee
Q 018143 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|.|.+.
T Consensus 100 l~V~~a 105 (131)
T 2m2b_A 100 INVEFA 105 (131)
T ss_dssp CCCEEC
T ss_pred EEEEEC
Confidence 998754
No 259
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=3.7e-17 Score=125.24 Aligned_cols=80 Identities=29% Similarity=0.441 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeE--EEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~--~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
+...++|||+|||+++|+++|+++|++| .|. .|+|+.++. |+++|||||+|.+.++|.+|+. +++..|.||.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4467899999999999999999999999 566 999999987 9999999999999999999997 5789999999999
Q ss_pred eecCC
Q 018143 181 SLSET 185 (360)
Q Consensus 181 ~~~~~ 185 (360)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 260
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-17 Score=120.67 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=68.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..+.++.++.. . +|||||+|.+.++|.+|+..|||..|.|+.|.|...
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44679999999999999999999999999986655544333 3 899999999999999999999999999999999764
No 261
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=115.04 Aligned_cols=72 Identities=21% Similarity=0.393 Sum_probs=67.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+|+++|+.+|++||.|..|.+++ +||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4568999999999999999999999999999999984 69999999999999999999999999999999864
No 262
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=125.41 Aligned_cols=78 Identities=23% Similarity=0.420 Sum_probs=72.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|+.||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999998876543 899999999999999999999999999999999764
No 263
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8e-17 Score=120.47 Aligned_cols=77 Identities=22% Similarity=0.440 Sum_probs=70.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+.. |+..|.|+.|.|.+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 456899999999999999999999999999999998875433 89999999999999999998 999999999998764
No 264
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=115.76 Aligned_cols=77 Identities=35% Similarity=0.542 Sum_probs=71.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+++|+++|+.+|++||.|..+.+++ +||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345688999999999999999999999999999999973 489999999999999999999999999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99765
No 265
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5e-17 Score=120.59 Aligned_cols=76 Identities=14% Similarity=0.264 Sum_probs=68.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||+.+|+++|+++|++||.| .|+|+.++.+. +|||||+|.+.++|.+||. +|+..|+||.|.|.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456799999999999999999999999954 99998887665 9999999999999999995 7999999999999875
No 266
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=2.8e-17 Score=120.62 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=68.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.. . +|||||+|.+.++|.+|+..|||..|.|+.|.|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999987766654433 3 899999999999999999999999999999998753
No 267
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=120.39 Aligned_cols=79 Identities=30% Similarity=0.486 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCC---CCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
...++|||+|||+++|+++|+.+|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|+..|++ ++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4678999999999999999999999999999 888888877 79999999999999999999998843 66776666
Q ss_pred eecCC
Q 018143 181 SLSET 185 (360)
Q Consensus 181 ~~~~~ 185 (360)
..+.+
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65543
No 268
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=119.52 Aligned_cols=74 Identities=15% Similarity=0.349 Sum_probs=69.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 34679999999999999999999999999999999887 399999999999999999999999999999999864
No 269
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=2e-16 Score=119.37 Aligned_cols=91 Identities=13% Similarity=0.262 Sum_probs=75.6
Q ss_pred CCCCCeeeecCCCCCCCccccccccceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHH
Q 018143 258 DGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336 (360)
Q Consensus 258 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~ 336 (360)
.|..+.+..+.+.... ......++|||+|||.. +++++|+++|++||.|..|.| .+|||||+|.+.++|.
T Consensus 6 ~g~~~~~~~s~~~~~~---~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN---DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSC---CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCC---CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHH
Confidence 4555555555443322 22244689999999999 999999999999999999999 2489999999999999
Q ss_pred HHHHhhCCceeCCeeEeEEee
Q 018143 337 KAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 337 ~A~~~lng~~~~G~~l~v~p~ 357 (360)
+|+..|||..|+|+.|.|.+.
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp HHHHHHTTCEETTEECCEEES
T ss_pred HHHHHcCCCEECCeEEEEEEC
Confidence 999999999999999999864
No 270
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.8e-17 Score=129.51 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+++|+++|+++|++|| |..|.|+.++. |+++|||||+|.+.++|.+|| .+|+..|.|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999 66999999986 999999999999999999999 7899999999999988
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8653
No 271
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.4e-16 Score=117.59 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=68.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCC-----eeEeE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG-----KSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G-----~~l~v 354 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.| +.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 45689999999999999999999999999999999876 799999999999999999999999999 88888
Q ss_pred Eee
Q 018143 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
.+.
T Consensus 88 ~~a 90 (108)
T 1x4c_A 88 KVD 90 (108)
T ss_dssp EES
T ss_pred EeC
Confidence 753
No 272
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.5e-17 Score=118.18 Aligned_cols=76 Identities=28% Similarity=0.513 Sum_probs=69.9
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 103 PPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.++.++|||+|||+ .+|+++|+.+|++||.|..|.+. +|||||+|.+.++|.+|+..||+..+.|++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45689999999999 99999999999999999999984 7899999999999999999999999999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98654
No 273
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.7e-16 Score=127.64 Aligned_cols=82 Identities=27% Similarity=0.549 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|++|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 018143 183 SE 184 (360)
Q Consensus 183 ~~ 184 (360)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 274
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.4e-16 Score=119.46 Aligned_cols=73 Identities=19% Similarity=0.350 Sum_probs=68.2
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....++|||+|||..+++++|+.+|++||.|..|.++ +|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 3557899999999999999999999999999999998 489999999999999999999999999999999764
No 275
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=2.6e-16 Score=117.15 Aligned_cols=72 Identities=26% Similarity=0.552 Sum_probs=67.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+|+++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4568999999999999999999999999999999873 79999999999999999999999999999999875
No 276
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=120.43 Aligned_cols=77 Identities=21% Similarity=0.410 Sum_probs=71.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+.. |+..|.|+.|.|.+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 456899999999999999999999999999999999876533 89999999999999999998 999999999999874
No 277
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=3.4e-17 Score=118.89 Aligned_cols=74 Identities=26% Similarity=0.467 Sum_probs=69.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
++|||+|||..+++++|+++|++||.|..|.++.++.++ +|||||+|.+.+ |.+|+..|||..|+|+.|.|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 589999999999999999999999999999999886533 899999999999 99999999999999999999874
No 278
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=4.3e-17 Score=126.93 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...++|||+|||+.+|+++|+++|++||. |..|+|+.++.++ +|||||+|.+.++|.+|+. |||..|+||.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 44679999999999999999999999999 8899998887766 9999999999999999999 99999999999998
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 121 ~a 122 (136)
T 2hgl_A 121 KS 122 (136)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 279
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=5.1e-17 Score=121.89 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.++.+. +|||||+|.+.++|.+|+. |||..|+||.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45679999999999999999999999998 8999999888765 9999999999999999999 99999999999988
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 88 ~a 89 (107)
T 2lmi_A 88 EI 89 (107)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 280
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=7.2e-17 Score=112.85 Aligned_cols=72 Identities=24% Similarity=0.381 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+|||+|||..+++++|+++|++||.|..|.++.++.++ +|||||+|.+.++|.+|+.. ++..+.|++|.|++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 58999999999999999999999999999998876533 89999999999999999995 99999999999875
No 281
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=116.89 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=66.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.| +++.+..+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 457899999999999999999999999987 555554444 899999999999999999999999999999999864
No 282
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=1.7e-16 Score=118.14 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+.++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 457899999999999999999999999999999987 459999999999999999999999999999999999
Q ss_pred CCcc
Q 018143 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.+..
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7643
No 283
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=115.61 Aligned_cols=76 Identities=28% Similarity=0.426 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccC--CCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPI--GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
...++|||+|||+.+|+++|+.+|++| |.|..+.+. +|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357899999999999999999999999 899998775 6799999999999999999999999999999999
Q ss_pred ecCCcc
Q 018143 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.+..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998654
No 284
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=113.74 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=67.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4568999999999999999999999999999999983 69999999999999999999999999999999864
No 285
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.5e-16 Score=118.02 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=67.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+++++|+.+|++||.|..|++... +|||||+|.+.++|.+|+..|||..|+|+.|+|.+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE----KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3579999999999999999999999999999999844 499999999999999999999999999999998763
No 286
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=130.71 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEE-----ecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL-----MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~-----~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~ 177 (360)
..+.++|||+|||+.+|+++|+.+|++||.|..+.+ ++...+|+++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 346789999999999999999999999998876411 111235899999999999999999999999999999999
Q ss_pred EEEeecCCc
Q 018143 178 IRCSLSETK 186 (360)
Q Consensus 178 l~v~~~~~~ 186 (360)
|+|.++.+.
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999753
No 287
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=117.46 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV-RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...++|||+|||+.+|+++|+.+|++||.|..+ .++.++.+ |.|||+|.+.++|.+|+..|||..+.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999 47777654 3499999999999999999999999999999999
Q ss_pred cCCc
Q 018143 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9865
No 288
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.2e-16 Score=116.07 Aligned_cols=76 Identities=26% Similarity=0.428 Sum_probs=69.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+.+|++||.|..|+|+.++. +. +|||||+|.+.++|.+|+. ++..|+|+.|.|.+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 4568999999999999999999999999999999988765 33 8999999999999999999 578999999999864
No 289
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=1.4e-16 Score=117.34 Aligned_cols=76 Identities=21% Similarity=0.395 Sum_probs=69.0
Q ss_pred cccceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.++++|||+|||..+++++|+ .+|++||.|..|.++. .+. +|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 457899999999999999999 9999999999999973 222 799999999999999999999999999999999
Q ss_pred Eee
Q 018143 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
.+.
T Consensus 84 ~~a 86 (97)
T 1nu4_A 84 QYA 86 (97)
T ss_dssp EEC
T ss_pred EEc
Confidence 764
No 290
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=4.2e-17 Score=127.37 Aligned_cols=76 Identities=13% Similarity=0.253 Sum_probs=69.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||+.+|+++|+++|++|| |..|+|+.++.+. +|||||+|.+.++|.+|| .+|+..|.||.|.|.+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4568999999999999999999999999 7799999888766 999999999999999999 78999999999998764
No 291
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=118.46 Aligned_cols=78 Identities=22% Similarity=0.271 Sum_probs=69.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEcC-CCCCC--CCCeEEEEeCCHHHHHHHHHhhC--CceeCCeeEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMP-PGKSG--KRDFGFIHYAERSSALKAVKDTE--KYEIDGKSHL 353 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~-~~~~~--~kg~afV~F~~~~~A~~A~~~ln--g~~~~G~~l~ 353 (360)
...++|||+|||..+++++|+.+|++||. |..|.++ .++.+ .+|||||+|.+.++|.+|+..|| +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34679999999999999999999999998 9999998 55543 28999999999999999999996 5999999999
Q ss_pred EEee
Q 018143 354 HFPV 357 (360)
Q Consensus 354 v~p~ 357 (360)
|.+.
T Consensus 86 V~~a 89 (109)
T 2dis_A 86 VDWA 89 (109)
T ss_dssp EEES
T ss_pred EEEc
Confidence 9764
No 292
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=117.63 Aligned_cols=73 Identities=16% Similarity=0.304 Sum_probs=64.6
Q ss_pred cccceEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCcee-----CCeeE
Q 018143 280 SQVKALYV--KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI-----DGKSH 352 (360)
Q Consensus 280 ~~~~~l~V--~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~-----~G~~l 352 (360)
.++++||| +|||..+++++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|||..| .|+.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 34678999 669999999999999999999999999865 49999999999999999999999988 56666
Q ss_pred eEEe
Q 018143 353 LHFP 356 (360)
Q Consensus 353 ~v~p 356 (360)
.|..
T Consensus 99 ~v~~ 102 (114)
T 2cq2_A 99 YLNF 102 (114)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 293
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=9.5e-17 Score=119.95 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=66.8
Q ss_pred cccceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC--ceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng--~~~~G~~l~v~p 356 (360)
.++++|||+|||+. +++++|+.+|++||.|..|+|++. ||||||+|.+.++|.+|+..||+ ..|.||+|+|..
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45789999999998 999999999999999999999765 49999999999999999998864 569999999875
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 99 a 99 (112)
T 1x4f_A 99 S 99 (112)
T ss_dssp E
T ss_pred C
Confidence 3
No 294
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.6e-17 Score=117.20 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcC-CccCCeEEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~-~~~~g~~l~v 180 (360)
+...++|||+|||+++|+++|+.+|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666552 478999999999999999999999 9999999999
Q ss_pred eecCCc
Q 018143 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.++.++
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999764
No 295
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.2e-16 Score=115.96 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=67.1
Q ss_pred cccceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||. .+++++|+.+|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..+.|++|.|.+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4578999999998 99999999999999999999995 489999999999999999999999999999999875
No 296
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.5e-16 Score=113.50 Aligned_cols=72 Identities=35% Similarity=0.498 Sum_probs=67.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+.+|++| |.|..|.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 457899999999999999999999999 999999886 379999999999999999999999999999999764
No 297
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=114.91 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+++|+++|+.+|++||.|..| +.++.+|+ ||||+|.+.+.|.+|+. |++..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456899999999999999999999999999987 55555565 99999999999999998 9999999999999988
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.+.
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 298
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=3.4e-16 Score=125.84 Aligned_cols=78 Identities=28% Similarity=0.373 Sum_probs=72.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+|+++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999998887543 899999999999999999999999999999999875
No 299
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=118.30 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=67.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
++|||+|||..+|+++|+++|++||.|..|.++.+ .+|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 47999999999999999999999999999999887 4599999999999999999999999999999999864
No 300
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=1.3e-16 Score=123.09 Aligned_cols=77 Identities=19% Similarity=0.416 Sum_probs=70.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.. . +|||||+|.+.++|.+|+ .|||..|.|+.|.|.+.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35689999999999999999999999999999999876533 3 899999999999999999 79999999999999864
No 301
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=5.1e-16 Score=111.82 Aligned_cols=71 Identities=24% Similarity=0.411 Sum_probs=66.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRH----G-------EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~----G-------~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
.+.++|||+|||..+++++|+++|++| | .|..+.++.++ |||||+|.+.++|.+|+ .|||..|.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k----g~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----NFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS----SEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC----cEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 457899999999999999999999999 8 89999998764 99999999999999999 99999999
Q ss_pred CeeEeEE
Q 018143 349 GKSHLHF 355 (360)
Q Consensus 349 G~~l~v~ 355 (360)
|+.|.|.
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999986
No 302
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=4.9e-16 Score=118.84 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceE-EEEEecCHHHHHHHHHHhcCCccCC--eEEE
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~ 179 (360)
+..--.|||+|||+.+|+++|+.+|++||.|.+|+++.. ++|| |||+|.+.++|.+|+..|||..|.| +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 344457889999999999999999999999999998763 2677 9999999999999999999999988 9999
Q ss_pred EeecCCcc
Q 018143 180 CSLSETKN 187 (360)
Q Consensus 180 v~~~~~~~ 187 (360)
|.++++.+
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99998764
No 303
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=119.18 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=67.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v----~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++++|||+|||..+|+++|+.+|++||.| ..+.+..+ ..+|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTG--RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECS--SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCC--ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999998 55555522 237999999999999999999999999999999998
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 101 ~a 102 (115)
T 2cpx_A 101 FG 102 (115)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 304
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=2.9e-16 Score=120.25 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=69.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCee--EEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
...++|||+|||+.+|+++|+++|++| .|. .|+|+.++.++ +|||||+|.+.++|.+|+.. ++..|+||.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 446789999999999999999999999 576 89999888766 99999999999999999995 78999999999987
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 118 a 118 (126)
T 2hgm_A 118 S 118 (126)
T ss_dssp E
T ss_pred C
Confidence 5
No 305
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=3.1e-16 Score=118.30 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 105 NGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..++|||+|||+. +|+++|+.+|++||.|..|.+ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999998 4789999999999999999999999999999999999
Q ss_pred CCc
Q 018143 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.+.
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 306
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.9e-16 Score=117.55 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=68.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeC--------Ce
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEID--------GK 350 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~--------G~ 350 (360)
...++|||+|||..+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|. |+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 346799999999999999999999999999999998887555 899999999999999999999999994 56
Q ss_pred eEeEEe
Q 018143 351 SHLHFP 356 (360)
Q Consensus 351 ~l~v~p 356 (360)
+|.|+.
T Consensus 103 ~l~v~~ 108 (114)
T 1x5o_A 103 PLLCKF 108 (114)
T ss_dssp CBEEEE
T ss_pred ceeEEc
Confidence 666654
No 307
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=4.5e-16 Score=127.19 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..++|||+|||+.+|+++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4789999999999999999999999999999999999989999999999999999999999999999999999999987
No 308
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=115.00 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=66.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|. +.++.+ ..+|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4467999999999999999999999999996 555543 23699999999999999999999999999999999764
No 309
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.2e-16 Score=113.24 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=68.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..| .|+.++.+ |.|||+|.+.++|.+|+..|||..|.|++|.|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346799999999999999999999999999999 47776654 45999999999999999999999999999999864
No 310
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=1.7e-16 Score=120.61 Aligned_cols=74 Identities=12% Similarity=0.197 Sum_probs=65.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|+|+.|.+..+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 34679999999999999999999999999999999876 899999999999999999999999999995554443
No 311
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=122.98 Aligned_cols=77 Identities=17% Similarity=0.336 Sum_probs=67.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||+.+|+++|+.+|+.||.|.. +.+.....+. +|||||+|.+.++|.+||. |||..|+|+.|.|.+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999977 4444444444 8999999999999999999 9999999999999875
No 312
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=9.8e-16 Score=127.21 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCc---cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCC
Q 018143 240 NACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH---SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP 316 (360)
Q Consensus 240 ~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~ 316 (360)
...+..|+.......+.+.+....+........+.. .......++|||+|||..+|+++|+.+|++||.|..|+|+.
T Consensus 64 ~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 64 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred HHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 344555555432245566666666655532221111 01223568999999999999999999999999999999998
Q ss_pred CCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 317 GKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 317 ~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+..+. +|||||+|.+.++|.+|+..++ ..|+|+.|.|.+-
T Consensus 144 ~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 144 TLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp CTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred CCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 77666 9999999999999999998665 5999999999863
No 313
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=121.50 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=68.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v----~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
..++|||+|||+.+|+++|+++|++||.| ..|+|+.+..++ +|||||+|.+.++|.+||.. |+..|.||.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 35799999999999999999999999975 688888776666 99999999999999999996 9999999999987
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 101 ~a 102 (123)
T 2dha_A 101 RS 102 (123)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 314
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=4.9e-16 Score=144.86 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=78.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred Cc
Q 018143 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
+.
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 54
No 315
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=7.3e-16 Score=111.26 Aligned_cols=76 Identities=32% Similarity=0.541 Sum_probs=63.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc--cCCeEEE
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIR 179 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~--~~g~~l~ 179 (360)
.+.+.++|||+|||+++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3457899999999999999999999999999999999874 69999999999999983 45544 5699999
Q ss_pred EeecCCc
Q 018143 180 CSLSETK 186 (360)
Q Consensus 180 v~~~~~~ 186 (360)
|.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9999764
No 316
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=1.1e-15 Score=113.66 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHhhccCCCeEEEEEecCCCC-CCcceEEEEEecCHHHHHHHHHHhcCCccCCe
Q 018143 103 PPNGSEVFIGGLPK-----DASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (360)
Q Consensus 103 ~~~~~~i~v~nlp~-----~~t~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~ 176 (360)
+.++++|+|+||.. +-++++|+.+|++||.|.+|.+++++.+ ++++|||||+|.+.++|.+|+..|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34688999999963 2478999999999999999999998754 68999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 018143 177 TIRCSLSET 185 (360)
Q Consensus 177 ~l~v~~~~~ 185 (360)
.|+|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999874
No 317
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=5.6e-16 Score=131.26 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=70.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+|+++|+++|++||.|.+|+|+.++.++ +|||||+|.+.++|.+|+..+|+..+.|+.|++.+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999998876543 899999999999999999999999999999988753
No 318
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=7.5e-16 Score=122.29 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC--eEEEEe
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~ 181 (360)
....+|||+|||+.+|+++|+.+|++||.|.+|.+... +++|||||+|.+.++|.+|+..|||..|.| ++|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34467899999999999999999999999999999753 358899999999999999999999999965 999999
Q ss_pred ecCCcc
Q 018143 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
+++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998764
No 319
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=111.99 Aligned_cols=77 Identities=21% Similarity=0.492 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|| ++|+++|+.+|++||.|..|.+. +++|||||+|.+.++|.+|+..||+..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999996 89999999999999999999984 5689999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98654
No 320
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=7.7e-16 Score=128.79 Aligned_cols=85 Identities=27% Similarity=0.524 Sum_probs=80.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEee
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 018143 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98653
No 321
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=3.2e-16 Score=116.49 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=69.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|+.||.|..|+|+.++.+. +|||||+|.+.++|.+|+. +|..|+|+.|.|.+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456899999999999999999999999999999999887554 8999999999999999999 999999999997654
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=9.1e-16 Score=125.50 Aligned_cols=80 Identities=28% Similarity=0.356 Sum_probs=73.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..+.++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3557899999999999999999999999999999999887554 899999999999999999999999999999999875
Q ss_pred e
Q 018143 358 F 358 (360)
Q Consensus 358 ~ 358 (360)
.
T Consensus 165 ~ 165 (177)
T 2f3j_A 165 A 165 (177)
T ss_dssp S
T ss_pred c
Confidence 4
No 323
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.9e-16 Score=116.11 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=69.0
Q ss_pred cCCCCCCEEEE--cCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc-----
Q 018143 101 ALPPNGSEVFI--GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL----- 173 (360)
Q Consensus 101 ~~~~~~~~i~v--~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~----- 173 (360)
....++++||| +|||+++|+++|+++|++||.|..|.++. .+|||||+|.+.++|.+|+..|||..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456789999 77999999999999999999999998864 278999999999999999999999987
Q ss_pred CCeEEEEeecC
Q 018143 174 KGKTIRCSLSE 184 (360)
Q Consensus 174 ~g~~l~v~~~~ 184 (360)
.|++|.|.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 68889888765
No 324
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.8e-16 Score=116.48 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=67.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC----C-CCeEEEEeCCHHHHHHHHHhh---CCc------
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----K-RDFGFIHYAERSSALKAVKDT---EKY------ 345 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~----~-kg~afV~F~~~~~A~~A~~~l---ng~------ 345 (360)
...++|||+|||..+++++|+++|++||.|. +.++.+..+ . +|||||+|.+.++|.+|+..| +|+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 3468999999999999999999999999999 888776543 3 899999999999999999998 676
Q ss_pred --eeCCeeEeEEeee
Q 018143 346 --EIDGKSHLHFPVF 358 (360)
Q Consensus 346 --~~~G~~l~v~p~~ 358 (360)
.+.++.+.|+|..
T Consensus 85 ~~~~~~~~~~v~p~~ 99 (114)
T 2dnl_A 85 SPTIKDKPVQIRPWN 99 (114)
T ss_dssp CSSSCSEEEEEECCC
T ss_pred CCCcCCCeeeccCCc
Confidence 5567788888754
No 325
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.9e-15 Score=115.14 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=68.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceE-EEEEecCHHHHHHHHHHhcCCccCC--eEEEEeec
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLS 183 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 183 (360)
..|||+|||+.+|+++|+.+|++||.|.+|+++.. .|| |||+|.+.++|..|+..|||..|.| ++|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35689999999999999999999999999999752 286 9999999999999999999999987 69999999
Q ss_pred CCcc
Q 018143 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8765
No 326
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.7e-16 Score=112.57 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=64.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+++++|+.+|++||.|..|.+ ++...+ ||||+|.+.++|.+|+. |||..|+|+.|.|.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~--~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM--DKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE--CSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE--cCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 4579999999999999999999999999999833 222223 99999999999999999 9999999999998764
No 327
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-16 Score=114.50 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=65.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..+ ......+|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 456899999999999999999999999988766 122222799999999999999999999999999999999864
No 328
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-16 Score=117.74 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=66.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+|+++|+.+|++||.|.. .++.+.. +. +|||||+|.+.++|.+|+. |||..|.|+.|.|.+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999999877 4444432 23 8999999999999999999 9999999999999764
No 329
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=5.3e-16 Score=132.34 Aligned_cols=77 Identities=21% Similarity=0.350 Sum_probs=70.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..++|||+|||+.+|+++|+++|++|| .|..|+|+.++.+ . +|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 9999999988643 3 99999999999999999999999999999999986
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 330
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=2.3e-15 Score=122.40 Aligned_cols=80 Identities=23% Similarity=0.526 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC--eEEEEe
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~ 181 (360)
...++|||+|||+.+|+++|+.+|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|||..+.| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 357899999999999999999999999999999999999889999999999999999999999999999988 999998
Q ss_pred ec
Q 018143 182 LS 183 (360)
Q Consensus 182 ~~ 183 (360)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 331
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.8e-16 Score=112.65 Aligned_cols=73 Identities=21% Similarity=0.394 Sum_probs=65.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC-ceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng-~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+|+++|+++|++||. |..+.+. .+|||||+|.+.++|.+|+..||| ..|.|+.|.|.+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 45679999999999999999999999999 6656553 249999999999999999999999 9999999999864
No 332
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=8.9e-16 Score=110.55 Aligned_cols=72 Identities=25% Similarity=0.530 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
...++|||+|||+++|+++|+.+|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999998643 899999999999999999 999999
Q ss_pred cCCeEEEEee
Q 018143 173 LKGKTIRCSL 182 (360)
Q Consensus 173 ~~g~~l~v~~ 182 (360)
+.|+.|+|.+
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 333
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=8.1e-16 Score=116.80 Aligned_cols=75 Identities=28% Similarity=0.446 Sum_probs=66.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeE-----E
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT-----I 178 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~-----l 178 (360)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999765 89999999999999999999999999988 6
Q ss_pred EEeecCC
Q 018143 179 RCSLSET 185 (360)
Q Consensus 179 ~v~~~~~ 185 (360)
+|..+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6666554
No 334
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=8.2e-16 Score=110.92 Aligned_cols=72 Identities=15% Similarity=0.325 Sum_probs=66.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+++++|+++|++| .|..|+++ ..+|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 45799999999999999999999999 99999885 23699999999999999999999999999999999764
No 335
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-15 Score=109.12 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=65.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|| .+|+++|+.+|++||.|..|.|... +|||||+|.+.++|.+|+..|||..|.|++|.|.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45689999996 8999999999999999999999643 499999999999999999999999999999999764
No 336
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=3.1e-15 Score=111.14 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=67.8
Q ss_pred cccceEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEcCCCCC--C-CCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018143 280 SQVKALYVKNIPD-----NTSTEKIKELFQRHGEVTKVVMPPGKS--G-KRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp~-----~~t~~~L~~~f~~~G~v~~v~i~~~~~--~-~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
.++++|+|+|+.. .-++++|+++|++||.|.+|.|+.++. + .+|||||+|.++++|.+|+..|||+.|+||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 236899999999999999999987653 2 3899999999999999999999999999999
Q ss_pred EeEEee
Q 018143 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|.|...
T Consensus 86 i~v~~a 91 (105)
T 2pe8_A 86 VKACFY 91 (105)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 998764
No 337
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=4.5e-15 Score=107.10 Aligned_cols=71 Identities=23% Similarity=0.372 Sum_probs=60.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce--eCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~--~~G~~l~v~p~ 357 (360)
.+.++|||+|||+.+|+++|+++|++||.|..|+|+.+ .||||||+|.+.++|.+ |+|.. +.|++|.|...
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 45689999999999999999999999999999999875 46999999999999984 45554 45999988753
No 338
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=106.50 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=60.2
Q ss_pred ccce-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 281 QVKA-LYVKNIPDNTSTEK----IKELFQRH-GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 281 ~~~~-l~V~nlp~~~t~~~----L~~~f~~~-G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
++.| |||+|||..++.++ |+++|++| |.|..|. + |+|||.|.+.++|.+|++.|||..+.||+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------g--G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------G--CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------T--TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------c--CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 3445 99999999999987 55899999 5999982 1 89999999999999999999999999999998
Q ss_pred Ee
Q 018143 355 FP 356 (360)
Q Consensus 355 ~p 356 (360)
..
T Consensus 79 ~~ 80 (96)
T 2diu_A 79 SF 80 (96)
T ss_dssp ES
T ss_pred Ee
Confidence 53
No 339
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=111.76 Aligned_cols=76 Identities=26% Similarity=0.427 Sum_probs=64.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..+.++|||+|||..+++++|+++|+.|+ .|.++.++. +. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35678999999999999999999999885 444444432 23 89999999999999999999999999999999986
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 89 a 89 (102)
T 2fc8_A 89 A 89 (102)
T ss_dssp C
T ss_pred e
Confidence 4
No 340
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=2.8e-15 Score=119.02 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=66.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCC--eeEeEEe
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG--KSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G--~~l~v~p 356 (360)
....+|||+|||+.+|+++|+++|++||.|.+|+|.... .+|||||+|.+.++|.+|+..|||..|.| ++|+|.+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 345679999999999999999999999999999986443 25899999999999999999999999965 9999865
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=3.9e-15 Score=123.58 Aligned_cols=78 Identities=27% Similarity=0.452 Sum_probs=71.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecCC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+++|+++|+.+|++||.|..|+++++.. |+++|||||+|.+.++|.+|+..+ +..+.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 58999999999999999999999999999999998864 999999999999999999999755 5689999999998764
No 342
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=4.3e-15 Score=124.65 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=68.9
Q ss_pred ccceEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp-~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
++++|||+||| ..+++++|+.+|++||.|.+|+|+.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 899999999999999999999998764 599999999999999999999999999999999853
No 343
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=6.6e-15 Score=112.16 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=63.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCe-EEEEeCCHHHHHHHHHhhCCceeCC--eeEeEEe
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--KSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~-afV~F~~~~~A~~A~~~lng~~~~G--~~l~v~p 356 (360)
...|||+|||+.+|+++|+++|++||.|..|+|... .|| |||+|.+.++|.+|+..|||..|.| +.|+|..
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345679999999999999999999999999998653 286 9999999999999999999999988 5888753
No 344
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=9.7e-17 Score=122.28 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=70.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
.+.++|||+|||..+++++|+++|++||.|.. |.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35679999999999999999999999999998 888877543 3 8999999999999999999999999999
Q ss_pred eeEeEEee
Q 018143 350 KSHLHFPV 357 (360)
Q Consensus 350 ~~l~v~p~ 357 (360)
+.|.|.+.
T Consensus 85 ~~l~V~~a 92 (116)
T 2lcw_A 85 NPIKVSFA 92 (116)
Confidence 99998764
No 345
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.59 E-value=6.3e-15 Score=109.51 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=67.9
Q ss_pred cccceEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEcCCCCCC----CCCeEEEEeCCHHHHHHHHHhhCCc
Q 018143 280 SQVKALYVKNI--PDNTS--------TEKIKELFQRHGEVTKVVMPPGKSG----KRDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 280 ~~~~~l~V~nl--p~~~t--------~~~L~~~f~~~G~v~~v~i~~~~~~----~kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
.++++|.|.|+ |..+. .++|++.|++||.|.+|+|+.+..+ .+|+|||+|.++++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 43443 3699999999999999999987653 3899999999999999999999999
Q ss_pred eeCCeeEeEEee
Q 018143 346 EIDGKSHLHFPV 357 (360)
Q Consensus 346 ~~~G~~l~v~p~ 357 (360)
.|+||.|+|...
T Consensus 83 ~f~GR~i~v~~~ 94 (105)
T 3v4m_A 83 KFANRVVVTKYC 94 (105)
T ss_dssp EETTEECEEEEE
T ss_pred EeCCCEEEEEEe
Confidence 999999999765
No 346
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=120.96 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=66.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEE--------EcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV--------VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v--------~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
.++++|||+|||..+|+++|+.+|++||.|..+ ++.. ....+|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456899999999999999999999999998763 3321 2223799999999999999999999999999999
Q ss_pred EeEEee
Q 018143 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|.|.+.
T Consensus 122 l~V~~a 127 (143)
T 3egn_A 122 MVVQFA 127 (143)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 999764
No 347
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-15 Score=109.93 Aligned_cols=77 Identities=31% Similarity=0.522 Sum_probs=66.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeec
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+++|+++|+.+|++||.|..|+++.+ ++|||||+|.+.++|.+|+. ....+.|++|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35789999999999999999999999999999999864 68999999999999986532 234568999999998
Q ss_pred CCcc
Q 018143 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 348
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.6e-15 Score=112.51 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=65.9
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCC----HHH----HHHHHH--hhCCce
Q 018143 283 KALYVKNI----PDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAE----RSS----ALKAVK--DTEKYE 346 (360)
Q Consensus 283 ~~l~V~nl----p~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~----~~~----A~~A~~--~lng~~ 346 (360)
+.|||+|| |+.+++..|+.+|+.||.|.++.++.++.+. +|||||+|.+ +.. |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999998875 9999999996 323 899999 899999
Q ss_pred eCCeeEeEE
Q 018143 347 IDGKSHLHF 355 (360)
Q Consensus 347 ~~G~~l~v~ 355 (360)
|+|++|+|.
T Consensus 83 I~Gr~irV~ 91 (136)
T 2j8a_A 83 IMGFKFEVI 91 (136)
T ss_dssp ETTEEEEEE
T ss_pred ecCcEEEEE
Confidence 999999985
No 349
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=7.8e-15 Score=120.01 Aligned_cols=79 Identities=27% Similarity=0.568 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccC---CeEEEEe
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIRCS 181 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~---g~~l~v~ 181 (360)
..++|||+|||+.+|+++|+.+|++||.|..+.+++++ +|+++|||||+|.+.++|.+|+..|||..+. |++|+|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56899999999999999999999999999999999986 4999999999999999999999999998776 4999999
Q ss_pred ecC
Q 018143 182 LSE 184 (360)
Q Consensus 182 ~~~ 184 (360)
+|.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 350
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=6.2e-15 Score=112.70 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=65.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCe-EEEEeCCHHHHHHHHHhhCCceeCC--eeEeEEe
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--KSHLHFP 356 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~-afV~F~~~~~A~~A~~~lng~~~~G--~~l~v~p 356 (360)
+.-.|||+|||+.+|+++|+++|++||.|.+|+|+... +|| |||+|.+.++|.+|+..|||..|.| +.|+|..
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 34568899999999999999999999999999987643 477 9999999999999999999999998 8888754
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=6.2e-15 Score=112.71 Aligned_cols=77 Identities=21% Similarity=0.490 Sum_probs=70.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEe
Q 018143 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|| ++|+++|+.+|++||.|..|.+. +++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999996 69999999999999999999985 568999999999999999999999999999999999
Q ss_pred ecCCc
Q 018143 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99865
No 352
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=6.1e-15 Score=120.80 Aligned_cols=77 Identities=23% Similarity=0.454 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEEeecC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+|+++|+.+|++||.|..+ ..+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56899999999999999999999999988766 5568999999999999999999999999999999999999997
Q ss_pred Cc
Q 018143 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.1e-14 Score=107.50 Aligned_cols=85 Identities=26% Similarity=0.325 Sum_probs=72.4
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcC
Q 018143 102 LPPNGSEVFIGGLPKDAS-----------EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~t-----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
.+.++++|+|+||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999954432 5799999999999999966 443 3799999999999999999999999
Q ss_pred CccCCeEEEEeecCCcccee
Q 018143 171 KELKGKTIRCSLSETKNRLF 190 (360)
Q Consensus 171 ~~~~g~~l~v~~~~~~~~l~ 190 (360)
..+.|++|+|.++.+....-
T Consensus 87 ~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp CEETTEECEEEECCSCCCSS
T ss_pred CEECCcEEEEEEeCCCCCcc
Confidence 99999999999998765443
No 354
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2.5e-14 Score=122.50 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=72.2
Q ss_pred cccccccceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018143 276 SAAASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 276 ~~~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.....++++|||+|||. .+++++|+++|++||.|..|+|+.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 28 ~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 28 GLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34445678999999999 99999999999999999999999876 589999999999999999999999999999999
Q ss_pred Eee
Q 018143 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
.+.
T Consensus 105 ~~a 107 (229)
T 2adc_A 105 TLS 107 (229)
T ss_dssp ECC
T ss_pred EEe
Confidence 754
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=1.4e-14 Score=110.80 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=65.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|| .+++++|+.+|++||.|..|.|... +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~----kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT----TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 6999999999999999999999733 499999999999999999999999999999999764
No 356
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.8e-15 Score=105.50 Aligned_cols=72 Identities=21% Similarity=0.385 Sum_probs=61.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+++|||+|||..+++++|+.+|++||.|..|+|+.+ .+|||||+|.+.++|.+|+.. +..+.|++|.|.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 4689999999999999999999999999999999865 369999999999999864332 34568999988753
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.9e-14 Score=106.91 Aligned_cols=76 Identities=9% Similarity=0.166 Sum_probs=65.5
Q ss_pred cccceEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018143 280 SQVKALYVKNIPDNTS-----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t-----------~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
.++++|+|+||..... +++|+.+|++||.|..|.|+... .+|||||+|.+.++|.+|+..|||+.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~--~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRH--PDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTC--TTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCC--CCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5678999999954432 57999999999999999774332 4799999999999999999999999999
Q ss_pred CeeEeEEee
Q 018143 349 GKSHLHFPV 357 (360)
Q Consensus 349 G~~l~v~p~ 357 (360)
||+|.|...
T Consensus 91 gr~l~v~~a 99 (112)
T 2dit_A 91 GRQITAQAW 99 (112)
T ss_dssp TEECEEEEC
T ss_pred CcEEEEEEe
Confidence 999999764
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.8e-14 Score=122.23 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=76.6
Q ss_pred cCcccCCCCCeeeecCCCCCCCccccccccceEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEcCCCCCCCCC
Q 018143 253 ANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT---------STEKIKELFQRHGEVTKVVMPPGKSGKRD 323 (360)
Q Consensus 253 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~---------t~~~L~~~f~~~G~v~~v~i~~~~~~~kg 323 (360)
......|+.....+....... .......++|||+|||..+ ++++|+.+|++||.|..|+|+..+ |
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~--gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k----G 180 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGI--GSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK----N 180 (240)
T ss_dssp SSBCTTSSBCGGGTC-----------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG----T
T ss_pred cCcccccchhcccchhcccCc--CccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC----C
Confidence 344455665444443332221 1223567899999999998 799999999999999999998654 9
Q ss_pred eEEEEeCCHHHHHHHHHhhCCcee------------CCeeEeEEee
Q 018143 324 FGFIHYAERSSALKAVKDTEKYEI------------DGKSHLHFPV 357 (360)
Q Consensus 324 ~afV~F~~~~~A~~A~~~lng~~~------------~G~~l~v~p~ 357 (360)
||||+|.+.++|..|+..|||..| .|+.|.|++.
T Consensus 181 ~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA 226 (240)
T 3u1l_A 181 CGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWA 226 (240)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEc
Confidence 999999999999999999999999 8999999875
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=1.9e-14 Score=121.98 Aligned_cols=79 Identities=20% Similarity=0.409 Sum_probs=71.4
Q ss_pred CCCCCCEEEEcCCCCCC---------CHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc
Q 018143 102 LPPNGSEVFIGGLPKDA---------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 102 ~~~~~~~i~v~nlp~~~---------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
.....++|||+|||+.+ ++++|+.+|++||.|.+|+++. ++|||||.|.+.++|..|+..|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34578999999999998 7999999999999999999985 48999999999999999999999999
Q ss_pred c------------CCeEEEEeecCCc
Q 018143 173 L------------KGKTIRCSLSETK 186 (360)
Q Consensus 173 ~------------~g~~l~v~~~~~~ 186 (360)
| .|+.|.|.+|...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EeccccccccccCCCCEEEEEEccCC
Confidence 9 8999999999764
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=4.1e-14 Score=105.07 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=71.7
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHhhccCCCeEEEEEecCCCC--CCcceEEEEEecCHHHHHHHHHHhcCCc
Q 018143 105 NGSEVFIGGL--PKDAS--------EEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 105 ~~~~i~v~nl--p~~~t--------~~~l~~~f~~~G~i~~~~~~~~~~~--~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
++++|.|.|+ |..+. .++|+..|++||.|.+|.|++++.+ ++++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5789999998 44443 3689999999999999999988764 4689999999999999999999999999
Q ss_pred cCCeEEEEeecCC
Q 018143 173 LKGKTIRCSLSET 185 (360)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (360)
+.||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998864
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.4e-14 Score=107.51 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=60.9
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018143 287 VKNIPDNTSTEKIKELF------------QRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 287 V~nlp~~~t~~~L~~~f------------~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
+.|||..+++++|++.| ++||.|.+|.|+.+..+. +|||||+|.++++|.+|+..|||+.|+||.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566677777666655 999999999999887655 99999999999999999999999999999999
Q ss_pred EEee
Q 018143 354 HFPV 357 (360)
Q Consensus 354 v~p~ 357 (360)
|...
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8754
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=4.5e-14 Score=106.87 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=67.2
Q ss_pred cccceEEEcCCCC--CC---CHHHHHHHHhhcCCeeEEEcCCCCCC-----C-CCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018143 280 SQVKALYVKNIPD--NT---STEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 280 ~~~~~l~V~nlp~--~~---t~~~L~~~f~~~G~v~~v~i~~~~~~-----~-kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
.++++|+|+|+-. .+ .+++|++.|++||.|.+|+|+.++.+ . +|+|||+|.++++|.+|+..|||+.|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3578999999842 22 35899999999999999999877542 2 699999999999999999999999999
Q ss_pred CeeEeEEeee
Q 018143 349 GKSHLHFPVF 358 (360)
Q Consensus 349 G~~l~v~p~~ 358 (360)
||.|+|....
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999997653
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=6.1e-14 Score=117.26 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=68.8
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 282 VKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+++|||+|||. .+++++|+.+|++||.|..|+++.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 47999999999 99999999999999999999999876 589999999999999999999999999999999764
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.5e-14 Score=107.32 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=64.3
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 018143 111 IGGLPKDASEEDLRDLC------------EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 111 v~nlp~~~t~~~l~~~f------------~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
+.|||+.+++++|+++| ++||.|.+|.++++.. |+++|||||+|.+.++|.+|+..|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777787777666 9999999999998765 8999999999999999999999999999999999
Q ss_pred EEeecC
Q 018143 179 RCSLSE 184 (360)
Q Consensus 179 ~v~~~~ 184 (360)
+|.+++
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 998863
No 365
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.47 E-value=1.6e-13 Score=121.22 Aligned_cols=77 Identities=17% Similarity=0.352 Sum_probs=69.5
Q ss_pred cccceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++++|||+|||..+++++|+ ++|++||.|..|+++. ....+|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 557899999999999999976 8999999999999886 22238999999999999999999999999999999997
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 86 ~a 87 (282)
T 3pgw_A 86 YA 87 (282)
T ss_pred Ee
Confidence 64
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=1.4e-13 Score=104.19 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCC--C---CCHHHHHHhhccCCCeEEEEEecCCC----CCCcceEEEEEecCHHHHHHHHHHhcCCccCC
Q 018143 105 NGSEVFIGGLPK--D---ASEEDLRDLCEPIGDVFEVRLMKDKE----SGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 105 ~~~~i~v~nlp~--~---~t~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
++++|+|+|+-. . -.+++|+..|++||.|.+|.|++++. +++++|+|||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999942 2 23689999999999999999998865 46788999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 018143 176 KTIRCSLSET 185 (360)
Q Consensus 176 ~~l~v~~~~~ 185 (360)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.46 E-value=3.4e-13 Score=101.29 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=65.7
Q ss_pred cccceEEEcCCCCCCC----------HHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 280 SQVKALYVKNIPDNTS----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t----------~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
.++++|.|+|+=..-. +++|++.|++||.|.+|.|+++. .+|+|||+|.+.++|.+|+..|||+.|+|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4578999999743222 25889999999999999997764 36999999999999999999999999999
Q ss_pred eeEeEEeee
Q 018143 350 KSHLHFPVF 358 (360)
Q Consensus 350 ~~l~v~p~~ 358 (360)
|.|+|....
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999998754
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=7.3e-13 Score=118.41 Aligned_cols=71 Identities=20% Similarity=0.380 Sum_probs=62.6
Q ss_pred cccceEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCcee---CCeeEeE
Q 018143 280 SQVKALYVKN--IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI---DGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~n--lp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~---~G~~l~v 354 (360)
.++++|||+| |++.+|+++|+++|++||.|..|.++.+ ||||||+|.+.++|.+|+..|||..+ .|+.+.+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT----CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 5678999999 5789999999999999999999999864 49999999999999999999999987 3665433
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=7.2e-12 Score=91.67 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=63.8
Q ss_pred CCCEEEEcCCC-------CCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeE
Q 018143 105 NGSEVFIGGLP-------KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (360)
Q Consensus 105 ~~~~i~v~nlp-------~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~ 177 (360)
...+|.|.-.+ ..+|+++|+.+|++||.|..|.|+ ++++|||||+|.+.++|..|+..++ .+.|++
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCe
Confidence 35567777655 458999999999999999999998 4779999999999999999998644 467999
Q ss_pred EEEeecCCc
Q 018143 178 IRCSLSETK 186 (360)
Q Consensus 178 l~v~~~~~~ 186 (360)
|+|.++.+.
T Consensus 82 l~V~~a~~~ 90 (100)
T 2d9o_A 82 LKISWLEGQ 90 (100)
T ss_dssp CEEECSSCC
T ss_pred EEEEEccCC
Confidence 999998764
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5.4e-12 Score=92.34 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 292 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..+++++|+.+|++||.|..|+|+. ..+|||||+|.+.++|.+|+..+++ +.|+.|+|.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 5689999999999999999999983 2379999999999999999998655 67999998764
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=9.3e-12 Score=93.41 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=67.3
Q ss_pred CCCCCEEEEcCCCCCC----------CHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCc
Q 018143 103 PPNGSEVFIGGLPKDA----------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~----------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
|.++++|.|.|+=... .+++|+..|++||.|.+|.+.++. ++|+|||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568899999993322 234789999999999999997653 48999999999999999999999999
Q ss_pred cCCeEEEEeecCC
Q 018143 173 LKGKTIRCSLSET 185 (360)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (360)
++||.|+|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999853
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=7e-12 Score=112.05 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=66.1
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCcc---CCe
Q 018143 102 LPPNGSEVFIGG--LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGK 176 (360)
Q Consensus 102 ~~~~~~~i~v~n--lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~---~g~ 176 (360)
...++.+|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|+..|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 355788999999 588999999999999999999988753 479999999999999999999999877 355
Q ss_pred --EEEEeecC
Q 018143 177 --TIRCSLSE 184 (360)
Q Consensus 177 --~l~v~~~~ 184 (360)
.|.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56777764
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2.3e-11 Score=91.27 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=67.5
Q ss_pred cccceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCC-HHHHHHHHHhhC--CceeCCeeEeEE
Q 018143 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE-RSSALKAVKDTE--KYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~-~~~A~~A~~~ln--g~~~~G~~l~v~ 355 (360)
.+...|+|+||+.. ++.++|+.+|++||.|.+|.+..+. ..|||+|.+ ..+|..|+..|| |..|+|..+.+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 44679999999999 9999999999999999999999887 579999999 799999999995 889999999887
Q ss_pred ee
Q 018143 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
.|
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=8.9e-11 Score=82.38 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=60.0
Q ss_pred cccceEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018143 280 SQVKALYVKNIP----DNTST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp----~~~t~----~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
++..||+|...| ..+-+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|+. |||..++||.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 445688888877 23333 6789999999999999999865 8999999999999998 9999999999
Q ss_pred EeEEe
Q 018143 352 HLHFP 356 (360)
Q Consensus 352 l~v~p 356 (360)
|+|..
T Consensus 78 LkV~l 82 (91)
T 2dnr_A 78 ITIAL 82 (91)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99975
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=7.8e-11 Score=82.67 Aligned_cols=74 Identities=24% Similarity=0.412 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC
Q 018143 104 PNGSEVFIGGLPK----DASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 104 ~~~~~i~v~nlp~----~~t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
++..||+|.-.|. ..-. .+|...|++||.|..++++.++ +||+|.+.++|.+|+. |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4667899988772 3333 5688999999999999999864 9999999999999997 99999999
Q ss_pred eEEEEeecCCc
Q 018143 176 KTIRCSLSETK 186 (360)
Q Consensus 176 ~~l~v~~~~~~ 186 (360)
|.|+|+++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998753
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.4e-10 Score=87.07 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecC-HHHHHHHHHHhc--CCccCCeEEE
Q 018143 104 PNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS-KEFAKKAIDELH--SKELKGKTIR 179 (360)
Q Consensus 104 ~~~~~i~v~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~-~~~a~~a~~~l~--~~~~~g~~l~ 179 (360)
+.++.|+|+|||+. ++.++|+.+|++||.|..|.+.++.. .|||.|.+ ...|..|+..++ +..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 56899999999999 99999999999999999999988754 59999999 899999999984 6788998888
Q ss_pred Eeec
Q 018143 180 CSLS 183 (360)
Q Consensus 180 v~~~ 183 (360)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7654
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=2.2e-10 Score=80.71 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=60.6
Q ss_pred cccceEEEcCCCCC------CCH---HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018143 280 SQVKALYVKNIPDN------TST---EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 280 ~~~~~l~V~nlp~~------~t~---~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
++..||+|..++.. ..+ .+|.+.|+.||.|..|++..++ +||+|.+.++|.+|+. |||..++||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 45569999998743 222 5688999999999999999875 9999999999999999 999999999
Q ss_pred eEeEEe
Q 018143 351 SHLHFP 356 (360)
Q Consensus 351 ~l~v~p 356 (360)
.|+|..
T Consensus 86 ~L~V~~ 91 (95)
T 1ufw_A 86 AVKISG 91 (95)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999975
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=9.3e-10 Score=77.54 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEcCCCCC-----CCH----HHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCC
Q 018143 101 ALPPNGSEVFIGGLPKD-----ASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (360)
Q Consensus 101 ~~~~~~~~i~v~nlp~~-----~t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~ 171 (360)
..-++..||+|.-++.. +-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |+|.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 34467789999998743 222 4688999999999999999874 9999999999999997 9999
Q ss_pred ccCCeEEEEeecC
Q 018143 172 ELKGKTIRCSLSE 184 (360)
Q Consensus 172 ~~~g~~l~v~~~~ 184 (360)
.+.||.|+|.+..
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999998754
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.96 E-value=4.5e-09 Score=75.38 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=67.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRH-----GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~-----G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.++|-+-|||.+++...|+.++.++ |.|..|.+.++- +=|+|+|.+...|.+|..+|+|..|.||+|+|-.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 5789999999999999999999999 999999999987 4599999999999999999999999999999864
Q ss_pred e
Q 018143 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
+
T Consensus 97 v 97 (117)
T 2l9w_A 97 I 97 (117)
T ss_dssp H
T ss_pred H
Confidence 3
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=1.6e-09 Score=91.87 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=56.5
Q ss_pred CCHHHHHHHHhhcCCeeEEEcCCCCCC-----C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018143 294 TSTEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 294 ~t~~~L~~~f~~~G~v~~v~i~~~~~~-----~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
-.+++|+..|++||.|.+|.|+.+..+ . +|++||+|.+.++|.+|+..|||+.|+||.|++....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 356899999999999999999744332 3 8999999999999999999999999999999987653
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.85 E-value=7.1e-09 Score=87.93 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHhhccCCCeEEEEEecCC----CCCCcceEEEEEecCHHHHHHHHHHhcCCccC
Q 018143 104 PNGSEVFIGGLPK-----DASEEDLRDLCEPIGDVFEVRLMKDK----ESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 104 ~~~~~i~v~nlp~-----~~t~~~l~~~f~~~G~i~~~~~~~~~----~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
.....+.+.|+-. .-.+++|+..|++||.|.++.++++. .+++++|++||+|.+.++|.+|+..|||..+.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 3455666666532 23567899999999999999998554 45699999999999999999999999999999
Q ss_pred CeEEEEeecCC
Q 018143 175 GKTIRCSLSET 185 (360)
Q Consensus 175 g~~l~v~~~~~ 185 (360)
||.|++.++..
T Consensus 202 gr~i~~~~~~~ 212 (222)
T 3dxb_A 202 GRKVVAEVYDQ 212 (222)
T ss_dssp SSBCEEEECCH
T ss_pred CeEEEEEEcCH
Confidence 99999999863
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=7.3e-07 Score=64.01 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC-----CCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
..++|-|-|||..++...|+.|+.+| |.|..+.++.+.. -|+|+|.+...|-+|.-.|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 9999999998853 599999999999999888999999999999
Q ss_pred Eee
Q 018143 180 CSL 182 (360)
Q Consensus 180 v~~ 182 (360)
+..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 854
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=9.7e-06 Score=57.80 Aligned_cols=87 Identities=22% Similarity=0.305 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcc-----CCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEP-----IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~-----~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
....+|.|.|||+.+.++.|.-+|.. =|.|..+.... +.|+|.|.+...|++.|+ ...+.|.|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 45789999999999999999999976 24899988864 359999999999999995 34788999999
Q ss_pred EEeecCC--ccceecCCCCCCCC
Q 018143 179 RCSLSET--KNRLFIGNVPKNWT 199 (360)
Q Consensus 179 ~v~~~~~--~~~l~v~nl~~~~~ 199 (360)
.|....+ ..++++.+|++..+
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCC
Confidence 9987654 57899999988764
No 384
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=1.3e-05 Score=59.11 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=61.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC-CeeEeEEeee
Q 018143 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID-GKSHLHFPVF 358 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~-G~~l~v~p~~ 358 (360)
...+.|.|.+.|... -..|...|++||.|.....+... ....|.|.+..+|++||.. ||..|+ +-.|-|+|+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~----NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTG----NWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSS----SEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCC----CeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 345789999999886 66788899999999988874332 7899999999999999994 999998 4889999974
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1e-05 Score=57.68 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=61.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhh-----cCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQR-----HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~-----~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
..++|.|.|||..++++.|.-+|++ =|.|..|.... +-|+|+|.++..|++.|.. ..+.|.|..|.|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 3579999999999999999999987 25888887755 3589999999999999884 4788999999999
Q ss_pred eee
Q 018143 356 PVF 358 (360)
Q Consensus 356 p~~ 358 (360)
|.+
T Consensus 80 P~~ 82 (104)
T 2dhx_A 80 PAP 82 (104)
T ss_dssp ECC
T ss_pred cCC
Confidence 975
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.88 E-value=4.3e-05 Score=53.89 Aligned_cols=67 Identities=10% Similarity=0.186 Sum_probs=57.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC----CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~----kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
++|.|++||+++|++++.+.++....+.......++... -.-|||.|.+.+++..-...++|+.|-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 479999999999999999999999988877776655322 4569999999999999999999998843
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.88 E-value=4.9e-05 Score=53.60 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=57.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCC--cceEEEEEecCHHHHHHHHHHhcCCccC
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
++|-|++||+.+|++++.+.+..+..+....++..+.+.. ...-|||.|.+.+++......++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999999999888887776654333 2356999999999999999999998763
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=3.9e-05 Score=54.98 Aligned_cols=70 Identities=21% Similarity=0.125 Sum_probs=57.8
Q ss_pred cceEEEcCCCCCC-CH----HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018143 282 VKALYVKNIPDNT-ST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 282 ~~~l~V~nlp~~~-t~----~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++|+|.||+..+ .. +.++.+|..|+++......+.- .-..|.|.++++|.+|-..|++..|.|+.++|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4689999999655 22 5789999999988777655543 247999999999999999999999999988763
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=2.5e-05 Score=56.02 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCEEEEcCCCCCC-CH----HHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 018143 106 GSEVFIGGLPKDA-SE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 106 ~~~i~v~nlp~~~-t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
.++|+|.||+..+ .. ..++.+|..|+++....+.+... -.-|.|.+.++|.+|...|++..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998865 32 46789999999999988886542 4899999999999999999999999999999
Q ss_pred eecCC
Q 018143 181 SLSET 185 (360)
Q Consensus 181 ~~~~~ 185 (360)
.++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99874
No 390
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.66 E-value=7.7e-05 Score=55.78 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=55.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEcCCCC-------------CC--CCCeEEEEeCCHHHHHHHHHhhCCce
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGK-------------SG--KRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~-------------~~--~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
.-|.|-+.|..... .+.+.|++||.|.. +.+.... .. ......|+|+++.+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 46788888877744 66679999999875 3222100 00 13567999999999999999 59999
Q ss_pred eCCeeEeEEee
Q 018143 347 IDGKSHLHFPV 357 (360)
Q Consensus 347 ~~G~~l~v~p~ 357 (360)
|+|..|-|.|+
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99999999997
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.55 E-value=0.00025 Score=49.87 Aligned_cols=58 Identities=24% Similarity=0.446 Sum_probs=47.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhc
Q 018143 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (360)
Q Consensus 103 ~~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~ 169 (360)
+.-.+.++| ++|+.+.-.+|..+|++||.| .|+-+-+- .|||.|.+++.|..|+..++
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 445677778 999999999999999999965 34444443 59999999999999998764
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.44 E-value=0.00035 Score=49.12 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=45.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln 343 (360)
..++| ++|..+...+|.++|+.||.|. |..+.+ ..|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-----TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999553 444445 579999999999999999764
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.28 E-value=0.00041 Score=49.09 Aligned_cols=68 Identities=9% Similarity=0.130 Sum_probs=53.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC----CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~----kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
+-+|.|+.||+++|++++.+.++..-.+.......++... -.-|||.|.+.++...-....+|+.|-.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4579999999999999998888776555555555444322 3458999999999999999999988843
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.28 E-value=0.00026 Score=49.96 Aligned_cols=54 Identities=19% Similarity=0.336 Sum_probs=45.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln 343 (360)
..++| ++|..+.-.+|.++|+.||.| .|..+.+ ..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999943 4555555 579999999999999999775
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.27 E-value=0.00035 Score=49.48 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=52.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCC--cceEEEEEecCHHHHHHHHHHhcCCccC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
+-+|-|++||+.+|++++.+.+.++-.+....++..+.+.+ ....|||.|.+.++........+|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45799999999999999999888876654444443332221 1235999999999999999999987763
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.01 E-value=0.0022 Score=47.30 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=57.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcCCccCC-eEEEEeec
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~ 183 (360)
..+-|.|-+.|+.. ...|...|++||.|.+..... ......|.|.+..+|++||. .||..+.| --|-|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 46789999999986 568889999999999888722 23479999999999999995 59999875 55566665
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.83 E-value=0.0015 Score=46.13 Aligned_cols=54 Identities=26% Similarity=0.444 Sum_probs=44.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhc
Q 018143 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (360)
Q Consensus 107 ~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~ 169 (360)
+.++| ++|+.+.-.+|..+|++||.| .|+-+-+- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999955 45555443 59999999999999998764
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.18 E-value=0.0023 Score=59.19 Aligned_cols=56 Identities=9% Similarity=0.248 Sum_probs=43.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
.++|+|. .|..+++.+|.++|++||+|.++.+...++ -||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 4789998 799999999999999999999999987653 6999999999998877653
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.02 E-value=0.0034 Score=58.02 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=43.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~ 166 (360)
..++|||. .|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 46899998 79999999999999999999999998654 3699999999999997774
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.69 E-value=0.0089 Score=44.67 Aligned_cols=78 Identities=9% Similarity=0.195 Sum_probs=54.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEE-EecC--------CCCCC-----cceEEEEEecCHHHHHHHHHHhcC
Q 018143 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR-LMKD--------KESGE-----SKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 105 ~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~-~~~~--------~~~~~-----~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
....|.|-+.|+..+. .|...|++||.|..-. +.+. +.+.+ ......|.|.++.+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3567889999877654 6778899999886521 1110 00011 23467899999999999995 699
Q ss_pred CccCCeEEEEeecC
Q 018143 171 KELKGKTIRCSLSE 184 (360)
Q Consensus 171 ~~~~g~~l~v~~~~ 184 (360)
..+.|.-|=|.++.
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877777764
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.01 E-value=1.3 Score=41.77 Aligned_cols=55 Identities=18% Similarity=0.313 Sum_probs=46.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC
Q 018143 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln 343 (360)
...++|+ +|..+...+|.++|+.||.| .|+...+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHH
Confidence 4567776 89999999999999999954 5665555 479999999999999999875
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=86.67 E-value=4.8 Score=27.43 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=47.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC
Q 018143 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng 344 (360)
..+-|.|-|+|..+-..++.-.....|---.+.... |-|+|.|.+.+....|++.|-+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec------CeeEEEecCChHHHHHHHHHHh
Confidence 356788999999999988887788888666676654 5699999999999999988643
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.43 E-value=2 Score=40.42 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=44.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcC
Q 018143 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 106 ~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
...++|+ +|..+...+|.++|+.||.+ .|+.+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3466666 99999999999999999965 4444433 2599999999999999988753
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=82.68 E-value=3.7 Score=27.17 Aligned_cols=59 Identities=5% Similarity=0.094 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHhhcC-----CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 292 DNTSTEKIKELFQRHG-----EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 292 ~~~t~~~L~~~f~~~G-----~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..+...+|..++..-+ .|-.|.|.. .|.||+-.. ..|..++..|++..+.|+.+.+++.
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 5566778877777655 355677754 478998886 5788899999999999999998875
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=72.17 E-value=3.7 Score=32.12 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=36.5
Q ss_pred ceEEEcCCCC-C--------CCHHHHHHHH--hhcCCeeEEEcCCCCCCCCCeEEEEeCCH
Q 018143 283 KALYVKNIPD-N--------TSTEKIKELF--QRHGEVTKVVMPPGKSGKRDFGFIHYAER 332 (360)
Q Consensus 283 ~~l~V~nlp~-~--------~t~~~L~~~f--~~~G~v~~v~i~~~~~~~kg~afV~F~~~ 332 (360)
.+..|-|+|. . .+...|++.| +.|.++. |+..-+..+.+|+|.|.|..-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCC
Confidence 4677888886 2 4457999977 8999876 555555556689999999975
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=68.48 E-value=25 Score=23.90 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=48.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHHhcC
Q 018143 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 104 ~~~~~i~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
...+-|.|-|+|..+-..++.-.....|---.|..+ .|.|.|.|.+.+....|++.|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 357889999999999999988777888866666655 45699999999999999987643
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.89 E-value=29 Score=27.07 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=37.0
Q ss_pred EEEEcCCCC---------CCCHHHHHHhh--ccCCCeEEEEEecCCCCCCcceEEEEEecCHHH-HHHHH
Q 018143 108 EVFIGGLPK---------DASEEDLRDLC--EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF-AKKAI 165 (360)
Q Consensus 108 ~i~v~nlp~---------~~t~~~l~~~f--~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~-a~~a~ 165 (360)
++.|-|+|. ..+...|++.| +.|.++. |+.+..+ .-.+|+|.|.|.+--. -..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 466778876 14557899977 9999876 4444444 3468899999976533 34444
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.89 E-value=67 Score=21.81 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=38.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018143 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
-++-......|..+|++.+++ || .|..|.....+.+. --|||++..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~-KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE-KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC-EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc-eEEEEEcCCCCcHHHHHHh
Confidence 344556778999999999988 66 56677554433332 3599999988777765543
No 409
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=27.47 E-value=1.2e+02 Score=18.97 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=42.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018143 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
.++.|.++.-.--...|...+.+ ..|..+.+.... +-+.|.|.+......++..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~----~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE----AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE----EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC----CEEEEEECCHHHHHHHHHH
Confidence 46889999877778899999999 889888876554 5688888855666677764
No 410
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.12 E-value=74 Score=22.55 Aligned_cols=36 Identities=11% Similarity=0.311 Sum_probs=28.6
Q ss_pred CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce
Q 018143 308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 308 ~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
.|.+|..+.+- +||-||+=.+..++..|+..+.+..
T Consensus 40 ~I~Si~~~~~l---kGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHV---KGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTC---CSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCC---ceEEEEEeCCHHHHHHHHhccccee
Confidence 37777776542 5999999999999999999876643
No 411
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.96 E-value=1.1e+02 Score=20.71 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=36.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHH
Q 018143 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (360)
-++-..+...|..+|++.+++ || .|..|.....+.+. --|+|++..-.+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~-KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE-KKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSS-EEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCc-eEEEEEECCCCcHHHHHH
Confidence 345556778999999999987 66 56676544433322 259999987766655443
No 412
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=23.24 E-value=2e+02 Score=20.15 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCCCHHHHHHhh-ccCC----CeEEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q 018143 116 KDASEEDLRDLC-EPIG----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (360)
Q Consensus 116 ~~~t~~~l~~~f-~~~G----~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~ 165 (360)
...+..+|+..+ +.|+ .|.-..+....-.|++.|||.| |.+.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 456777887644 3355 2333344445555778888876 77777777654
No 413
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=22.77 E-value=91 Score=19.59 Aligned_cols=22 Identities=18% Similarity=0.603 Sum_probs=15.4
Q ss_pred EEEEecCCCCCCcceEEEEEecC
Q 018143 135 EVRLMKDKESGESKGFAFVSFRS 157 (360)
Q Consensus 135 ~~~~~~~~~~~~~~g~a~v~f~~ 157 (360)
.++++.++. ..+.|++||.|.+
T Consensus 21 ~arlllnrR-ps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNRR-PPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTBC-CSSTTEEEEEETT
T ss_pred hhhhhhccC-CCcCceEEEEEec
Confidence 345555543 5578999999976
No 414
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.53 E-value=1.2e+02 Score=20.69 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=20.5
Q ss_pred CeEEEEEecCCCCCCcceEEEEEec
Q 018143 132 DVFEVRLMKDKESGESKGFAFVSFR 156 (360)
Q Consensus 132 ~i~~~~~~~~~~~~~~~g~a~v~f~ 156 (360)
.|..+++.+-...|+.++||-|.|.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5778888777667899999999875
No 415
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=21.36 E-value=1.1e+02 Score=24.60 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=32.8
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018143 309 VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
|.+|..+.+ -+||.||+=.+..+...|++.+.+... .++.+.|+
T Consensus 139 I~Si~~~d~---lkGYIyVEA~~~~~V~~ai~Gi~~vy~--~~~~lVPi 182 (200)
T 2exu_A 139 ILSIFQRDN---YTGRIYIEAPKQSVIEKFCNGVPDIYI--SQKLLIPV 182 (200)
T ss_dssp CCEEECCTT---STTEEEEECSCHHHHHHHHTTCTTEEE--EEEEECCG
T ss_pred EEEEEecCC---CcEEEEEEECCHHHHHHHHhhhhhhhc--CCceEecH
Confidence 677777653 359999999999999999999888533 24455554
No 416
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=21.23 E-value=20 Score=27.30 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=17.4
Q ss_pred HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeC
Q 018143 297 EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYA 330 (360)
Q Consensus 297 ~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~ 330 (360)
+++.++|...|.|+..... +|||||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC------CCeeEEeeC
Confidence 3455667777877766553 389999876
No 417
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=20.23 E-value=1.4e+02 Score=22.82 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=27.9
Q ss_pred CCHHHHHHhhccCCCe---EEEEEecCCCCCCcceEEEE
Q 018143 118 ASEEDLRDLCEPIGDV---FEVRLMKDKESGESKGFAFV 153 (360)
Q Consensus 118 ~t~~~l~~~f~~~G~i---~~~~~~~~~~~~~~~g~a~v 153 (360)
.|+++|+++-.+.|.+ .++++..+..+|+.+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5789999999999966 45666666446999988875
Done!