Query 018144
Match_columns 360
No_of_seqs 302 out of 1888
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 5.4E-48 1.2E-52 348.1 29.5 299 62-360 48-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 1.9E-26 4.2E-31 206.7 28.0 220 81-349 2-245 (246)
3 COG3386 Gluconolactonase [Carb 99.9 4.6E-25 1E-29 201.0 29.0 237 65-353 18-279 (307)
4 PF03088 Str_synth: Strictosid 99.9 2.1E-21 4.6E-26 142.8 8.3 88 152-239 1-89 (89)
5 COG4257 Vgb Streptogramin lyas 99.8 4.8E-18 1E-22 146.6 22.7 227 73-358 56-303 (353)
6 PLN02919 haloacid dehalogenase 99.8 9.2E-16 2E-20 161.8 31.6 234 76-360 565-888 (1057)
7 COG4257 Vgb Streptogramin lyas 99.7 8.6E-15 1.9E-19 126.6 22.8 225 68-358 93-345 (353)
8 KOG4499 Ca2+-binding protein R 99.6 5.2E-13 1.1E-17 113.1 20.6 221 82-349 18-274 (310)
9 PLN02919 haloacid dehalogenase 99.5 1.9E-12 4.1E-17 136.9 25.4 177 78-272 623-878 (1057)
10 PF08450 SGL: SMP-30/Gluconola 99.4 1.2E-11 2.5E-16 110.9 19.5 178 115-359 10-212 (246)
11 TIGR02604 Piru_Ver_Nterm putat 99.3 4.3E-10 9.2E-15 106.7 19.4 155 77-234 12-210 (367)
12 PRK11028 6-phosphogluconolacto 99.3 9.8E-09 2.1E-13 96.0 28.3 239 65-359 23-303 (330)
13 PF10282 Lactonase: Lactonase, 99.2 8.7E-09 1.9E-13 97.0 26.6 241 65-359 25-321 (345)
14 PF03022 MRJP: Major royal jel 99.1 2.1E-08 4.6E-13 91.5 22.5 149 148-350 60-255 (287)
15 COG3292 Predicted periplasmic 99.1 3.1E-09 6.7E-14 100.8 15.4 129 81-236 167-316 (671)
16 PF10282 Lactonase: Lactonase, 99.0 5E-07 1.1E-11 85.1 28.6 192 115-359 47-274 (345)
17 PRK11028 6-phosphogluconolacto 99.0 3.5E-07 7.6E-12 85.5 26.2 137 116-272 46-195 (330)
18 COG2706 3-carboxymuconate cycl 99.0 1.1E-06 2.4E-11 79.4 27.9 232 78-360 39-321 (346)
19 TIGR02604 Piru_Ver_Nterm putat 99.0 4E-08 8.7E-13 93.2 18.8 178 148-354 13-207 (367)
20 COG2706 3-carboxymuconate cycl 99.0 8.3E-07 1.8E-11 80.3 25.1 189 65-272 76-310 (346)
21 TIGR03866 PQQ_ABC_repeats PQQ- 98.9 3.3E-06 7.1E-11 76.9 29.1 221 79-360 31-279 (300)
22 COG2133 Glucose/sorbosone dehy 98.9 1.1E-06 2.3E-11 82.6 25.8 249 71-359 60-396 (399)
23 KOG1520 Predicted alkaloid syn 98.9 1.3E-07 2.9E-12 86.7 18.9 168 70-272 45-238 (376)
24 PF07995 GSDH: Glucose / Sorbo 98.9 3.6E-07 7.9E-12 85.4 21.8 154 78-235 1-212 (331)
25 COG3391 Uncharacterized conser 98.9 2.9E-06 6.2E-11 80.9 26.9 175 79-272 31-227 (381)
26 KOG4659 Uncharacterized conser 98.9 5.1E-07 1.1E-11 92.6 21.9 226 77-357 363-688 (1899)
27 COG3386 Gluconolactonase [Carb 98.9 1.1E-07 2.4E-12 87.2 16.0 158 153-360 29-193 (307)
28 KOG4659 Uncharacterized conser 98.8 1.9E-06 4.1E-11 88.7 22.8 186 78-297 406-695 (1899)
29 TIGR03866 PQQ_ABC_repeats PQQ- 98.7 3.6E-05 7.9E-10 70.0 27.4 127 117-270 43-175 (300)
30 PF01731 Arylesterase: Arylest 98.7 1.3E-07 2.9E-12 69.2 8.8 82 152-237 1-84 (86)
31 COG3292 Predicted periplasmic 98.6 3.1E-07 6.7E-12 87.5 11.7 95 150-272 166-266 (671)
32 COG3391 Uncharacterized conser 98.6 2.1E-05 4.5E-10 75.1 23.8 170 79-272 74-273 (381)
33 PF06977 SdiA-regulated: SdiA- 98.5 2.7E-05 5.9E-10 69.2 21.0 180 76-272 19-241 (248)
34 TIGR03300 assembly_YfgL outer 98.4 0.00089 1.9E-08 63.7 29.1 127 85-238 62-209 (377)
35 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00054 1.2E-08 64.1 26.2 115 213-359 200-329 (352)
36 TIGR03606 non_repeat_PQQ dehyd 98.4 4.1E-05 8.8E-10 73.7 18.5 162 71-235 23-260 (454)
37 PF05096 Glu_cyclase_2: Glutam 98.3 7.5E-05 1.6E-09 66.2 18.1 51 186-236 194-260 (264)
38 TIGR03032 conserved hypothetic 98.3 0.00029 6.2E-09 63.6 20.4 180 78-274 48-263 (335)
39 PRK11138 outer membrane biogen 98.3 0.00022 4.8E-09 68.4 21.3 197 89-351 120-345 (394)
40 TIGR03606 non_repeat_PQQ dehyd 98.2 0.00013 2.8E-09 70.3 18.8 109 148-273 29-166 (454)
41 KOG1446 Histone H3 (Lys4) meth 98.2 0.0039 8.4E-08 55.8 26.3 222 78-359 14-261 (311)
42 PRK11138 outer membrane biogen 98.2 0.00062 1.3E-08 65.3 23.2 197 89-352 160-387 (394)
43 PF07995 GSDH: Glucose / Sorbo 98.2 3.3E-05 7E-10 72.3 13.6 160 149-352 2-203 (331)
44 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00013 2.9E-09 68.1 17.4 122 160-329 13-150 (352)
45 PF03022 MRJP: Major royal jel 98.2 0.00059 1.3E-08 62.4 21.2 173 82-272 4-255 (287)
46 TIGR03300 assembly_YfgL outer 98.2 0.00082 1.8E-08 64.0 22.9 123 185-354 249-374 (377)
47 KOG1214 Nidogen and related ba 98.1 7.8E-05 1.7E-09 74.1 14.3 150 71-272 1060-1216(1289)
48 PF06977 SdiA-regulated: SdiA- 98.1 0.0015 3.2E-08 58.2 21.3 186 116-357 33-247 (248)
49 PF13360 PQQ_2: PQQ-like domai 98.1 0.0027 5.8E-08 56.0 23.3 160 85-271 32-220 (238)
50 KOG1214 Nidogen and related ba 98.1 0.00038 8.3E-09 69.4 18.7 154 148-359 1067-1225(1289)
51 cd00200 WD40 WD40 domain, foun 98.1 0.0067 1.5E-07 53.5 26.2 209 83-356 56-287 (289)
52 KOG0291 WD40-repeat-containing 98.0 0.0054 1.2E-07 60.9 25.5 171 78-272 350-541 (893)
53 PF02239 Cytochrom_D1: Cytochr 98.0 0.00037 8E-09 66.1 17.4 150 152-359 40-201 (369)
54 cd00200 WD40 WD40 domain, foun 98.0 0.008 1.7E-07 53.0 26.3 166 80-271 11-197 (289)
55 PF02239 Cytochrom_D1: Cytochr 98.0 0.0041 8.8E-08 59.1 24.1 132 116-272 48-192 (369)
56 PF13360 PQQ_2: PQQ-like domai 97.9 0.0095 2.1E-07 52.4 23.9 179 115-360 35-230 (238)
57 KOG0318 WD40 repeat stress pro 97.9 0.013 2.9E-07 56.0 24.8 164 82-272 324-507 (603)
58 COG3204 Uncharacterized protei 97.9 0.0068 1.5E-07 54.2 21.5 178 78-272 85-303 (316)
59 PRK04792 tolB translocation pr 97.8 0.012 2.7E-07 57.4 24.5 188 84-328 223-437 (448)
60 PF05096 Glu_cyclase_2: Glutam 97.8 0.0079 1.7E-07 53.6 19.9 154 149-359 45-202 (264)
61 PRK04922 tolB translocation pr 97.7 0.02 4.3E-07 55.7 24.3 187 85-328 210-423 (433)
62 PRK04792 tolB translocation pr 97.7 0.029 6.2E-07 54.9 25.0 116 127-266 243-363 (448)
63 PRK05137 tolB translocation pr 97.7 0.055 1.2E-06 52.6 26.9 116 127-266 227-347 (435)
64 PRK13684 Ycf48-like protein; P 97.7 0.051 1.1E-06 50.9 25.0 83 186-272 151-234 (334)
65 PF05787 DUF839: Bacterial pro 97.7 0.001 2.3E-08 65.7 14.1 79 146-225 433-520 (524)
66 PRK00178 tolB translocation pr 97.6 0.044 9.6E-07 53.1 25.2 161 83-268 203-389 (430)
67 PRK03629 tolB translocation pr 97.6 0.08 1.7E-06 51.4 26.5 118 127-268 224-346 (429)
68 COG1520 FOG: WD40-like repeat 97.6 0.019 4.2E-07 54.5 21.5 129 86-237 65-217 (370)
69 PF01436 NHL: NHL repeat; Int 97.5 0.00018 3.8E-09 40.9 4.1 28 206-234 1-28 (28)
70 PRK02888 nitrous-oxide reducta 97.5 0.018 3.8E-07 57.3 20.0 86 187-272 296-394 (635)
71 PRK02889 tolB translocation pr 97.5 0.09 2E-06 51.0 25.0 124 153-328 288-415 (427)
72 PRK05137 tolB translocation pr 97.5 0.057 1.2E-06 52.6 23.4 96 151-265 204-302 (435)
73 cd00216 PQQ_DH Dehydrogenases 97.5 0.048 1E-06 53.9 23.1 127 184-351 308-458 (488)
74 PRK04922 tolB translocation pr 97.5 0.1 2.2E-06 50.8 25.0 126 117-266 216-349 (433)
75 PRK04043 tolB translocation pr 97.5 0.1 2.3E-06 50.4 24.7 124 119-268 203-334 (419)
76 cd00216 PQQ_DH Dehydrogenases 97.4 0.15 3.2E-06 50.5 26.0 236 89-351 110-416 (488)
77 COG3211 PhoX Predicted phospha 97.4 0.0015 3.2E-08 63.2 11.3 151 68-226 406-573 (616)
78 COG3211 PhoX Predicted phospha 97.4 0.0046 9.9E-08 60.0 14.3 20 254-273 501-520 (616)
79 PRK03629 tolB translocation pr 97.4 0.14 3E-06 49.8 25.0 161 83-269 203-390 (429)
80 KOG4499 Ca2+-binding protein R 97.4 0.0071 1.5E-07 52.3 13.8 92 117-225 170-273 (310)
81 PF05787 DUF839: Bacterial pro 97.4 0.012 2.5E-07 58.4 17.1 153 75-229 241-457 (524)
82 COG3823 Glutamine cyclotransfe 97.4 0.031 6.8E-07 47.6 17.0 41 186-226 195-248 (262)
83 PF02333 Phytase: Phytase; In 97.3 0.025 5.5E-07 53.2 17.7 135 88-239 66-239 (381)
84 PRK00178 tolB translocation pr 97.3 0.14 3.1E-06 49.6 23.8 98 152-269 202-304 (430)
85 KOG2055 WD40 repeat protein [G 97.3 0.059 1.3E-06 50.9 19.6 252 82-359 217-511 (514)
86 KOG1274 WD40 repeat protein [G 97.3 0.28 6E-06 50.3 25.3 139 79-239 14-170 (933)
87 PRK04043 tolB translocation pr 97.3 0.21 4.6E-06 48.3 25.6 186 85-329 194-413 (419)
88 TIGR03118 PEPCTERM_chp_1 conse 97.2 0.072 1.6E-06 48.2 18.9 126 210-359 141-278 (336)
89 COG4946 Uncharacterized protei 97.2 0.054 1.2E-06 51.4 18.5 80 188-272 383-462 (668)
90 COG2133 Glucose/sorbosone dehy 97.2 0.033 7.1E-07 52.8 17.3 65 208-272 315-386 (399)
91 TIGR02800 propeller_TolB tol-p 97.1 0.26 5.7E-06 47.4 24.8 79 187-270 302-383 (417)
92 PF07433 DUF1513: Protein of u 97.1 0.14 3.1E-06 46.6 19.8 165 153-359 55-246 (305)
93 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.19 4.1E-06 44.4 20.7 141 73-239 50-219 (354)
94 KOG0289 mRNA splicing factor [ 97.1 0.14 3E-06 48.2 19.4 177 120-357 318-502 (506)
95 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.15 3.3E-06 50.8 21.5 99 89-201 69-195 (527)
96 PF07433 DUF1513: Protein of u 97.1 0.049 1.1E-06 49.6 16.3 145 183-348 24-180 (305)
97 PF14870 PSII_BNR: Photosynthe 97.1 0.25 5.3E-06 45.4 23.3 132 114-272 69-206 (302)
98 PRK02889 tolB translocation pr 97.1 0.31 6.8E-06 47.3 23.3 96 151-265 198-296 (427)
99 smart00135 LY Low-density lipo 97.0 0.0039 8.4E-08 38.9 6.2 37 203-239 5-41 (43)
100 TIGR03032 conserved hypothetic 96.9 0.31 6.7E-06 44.5 20.2 167 112-347 54-258 (335)
101 PF02333 Phytase: Phytase; In 96.9 0.21 4.5E-06 47.2 19.1 133 188-359 130-289 (381)
102 PF01436 NHL: NHL repeat; Int 96.9 0.0021 4.5E-08 36.5 3.7 27 78-104 1-28 (28)
103 TIGR02800 propeller_TolB tol-p 96.8 0.5 1.1E-05 45.4 26.7 119 127-269 215-338 (417)
104 PRK13684 Ycf48-like protein; P 96.8 0.45 9.8E-06 44.5 22.9 109 207-354 215-326 (334)
105 PF14583 Pectate_lyase22: Olig 96.8 0.066 1.4E-06 50.3 15.2 125 186-326 59-187 (386)
106 KOG0318 WD40 repeat stress pro 96.8 0.55 1.2E-05 45.3 24.3 86 183-272 338-426 (603)
107 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.34 7.3E-06 42.9 20.4 134 80-238 14-166 (354)
108 KOG2106 Uncharacterized conser 96.7 0.58 1.3E-05 45.0 22.2 24 82-105 250-273 (626)
109 PF06433 Me-amine-dh_H: Methyl 96.7 0.052 1.1E-06 50.1 13.9 99 160-273 3-116 (342)
110 PRK01742 tolB translocation pr 96.7 0.59 1.3E-05 45.4 22.0 74 151-239 206-282 (429)
111 PF03088 Str_synth: Strictosid 96.6 0.015 3.2E-07 43.0 7.8 83 256-359 1-86 (89)
112 PF14583 Pectate_lyase22: Olig 96.6 0.46 9.9E-06 44.8 19.3 138 100-239 61-226 (386)
113 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 0.55 1.2E-05 46.9 21.2 44 306-351 480-524 (527)
114 KOG0271 Notchless-like WD40 re 96.5 0.27 5.7E-06 45.7 16.4 177 69-271 238-470 (480)
115 KOG2106 Uncharacterized conser 96.5 0.53 1.1E-05 45.3 18.7 137 73-237 325-477 (626)
116 PRK01742 tolB translocation pr 96.5 0.97 2.1E-05 43.9 24.0 92 127-238 229-325 (429)
117 PF13449 Phytase-like: Esteras 96.5 0.31 6.6E-06 45.5 17.5 111 150-272 86-234 (326)
118 PF13449 Phytase-like: Esteras 96.4 0.36 7.8E-06 45.1 17.7 65 208-273 86-168 (326)
119 COG3204 Uncharacterized protei 96.4 0.27 5.8E-06 44.3 15.4 146 71-236 121-311 (316)
120 KOG0278 Serine/threonine kinas 96.3 0.17 3.8E-06 44.3 13.7 119 126-271 165-286 (334)
121 PLN00033 photosystem II stabil 96.3 1.1 2.3E-05 43.1 26.4 59 210-272 242-300 (398)
122 KOG0315 G-protein beta subunit 96.3 0.69 1.5E-05 40.7 18.4 169 79-271 84-277 (311)
123 KOG0266 WD40 repeat-containing 96.2 0.57 1.2E-05 45.9 18.8 102 149-271 204-307 (456)
124 KOG0291 WD40-repeat-containing 96.1 1.8 3.9E-05 43.8 24.2 103 149-271 351-454 (893)
125 KOG1274 WD40 repeat protein [G 96.1 0.64 1.4E-05 47.7 18.4 156 90-268 67-248 (933)
126 COG1520 FOG: WD40-like repeat 96.0 0.21 4.5E-06 47.5 14.1 136 155-350 64-206 (370)
127 PRK01029 tolB translocation pr 95.9 1.8 3.9E-05 42.1 22.6 79 187-265 211-293 (428)
128 PF14269 Arylsulfotran_2: Aryl 95.9 0.32 7E-06 44.7 14.5 123 150-324 145-297 (299)
129 KOG0279 G protein beta subunit 95.9 1.2 2.5E-05 39.8 23.3 181 116-360 74-262 (315)
130 KOG0266 WD40 repeat-containing 95.8 2.1 4.5E-05 42.0 24.6 105 149-271 247-354 (456)
131 PLN00181 protein SPA1-RELATED; 95.7 3.3 7.2E-05 43.7 28.4 135 81-238 486-649 (793)
132 PF08662 eIF2A: Eukaryotic tra 95.6 1.1 2.4E-05 38.4 15.9 99 151-272 62-163 (194)
133 KOG0639 Transducin-like enhanc 95.6 0.44 9.5E-06 45.8 13.8 158 186-356 486-659 (705)
134 KOG1446 Histone H3 (Lys4) meth 95.5 1.8 4E-05 39.1 23.9 146 151-352 143-296 (311)
135 KOG2055 WD40 repeat protein [G 95.4 2.6 5.7E-05 40.2 18.3 146 152-358 261-415 (514)
136 KOG0275 Conserved WD40 repeat- 95.3 0.96 2.1E-05 41.1 14.4 73 149-239 349-425 (508)
137 PF05694 SBP56: 56kDa selenium 95.2 3 6.5E-05 40.0 19.3 180 89-272 87-332 (461)
138 KOG2048 WD40 repeat protein [G 95.2 2.5 5.4E-05 42.1 18.2 136 85-238 389-549 (691)
139 PRK02888 nitrous-oxide reducta 95.2 1.6 3.5E-05 43.8 17.0 171 79-272 235-451 (635)
140 KOG0640 mRNA cleavage stimulat 95.1 0.18 3.9E-06 45.5 9.3 100 150-272 174-281 (430)
141 KOG0294 WD40 repeat-containing 95.1 2.6 5.6E-05 38.4 21.0 99 150-272 129-228 (362)
142 PTZ00421 coronin; Provisional 95.1 4 8.7E-05 40.4 20.5 102 150-271 77-187 (493)
143 PTZ00420 coronin; Provisional 95.0 4.4 9.5E-05 40.8 20.1 102 150-272 76-187 (568)
144 KOG0772 Uncharacterized conser 95.0 1.2 2.6E-05 43.0 14.8 58 210-268 272-333 (641)
145 COG3490 Uncharacterized protei 94.9 2.7 5.9E-05 37.9 20.0 59 154-226 119-181 (366)
146 PRK01029 tolB translocation pr 94.8 4.3 9.2E-05 39.5 25.0 95 152-265 284-383 (428)
147 KOG0279 G protein beta subunit 94.7 3 6.5E-05 37.3 20.7 167 81-272 66-252 (315)
148 TIGR03118 PEPCTERM_chp_1 conse 94.6 3.4 7.5E-05 37.7 20.8 84 228-347 221-320 (336)
149 COG4946 Uncharacterized protei 94.6 1.2 2.5E-05 42.8 13.5 91 119-226 416-508 (668)
150 PLN00033 photosystem II stabil 94.5 4.7 0.0001 38.7 23.7 108 208-353 282-393 (398)
151 KOG0278 Serine/threonine kinas 94.5 2.4 5.3E-05 37.4 14.3 126 185-356 163-293 (334)
152 PF07494 Reg_prop: Two compone 94.3 0.055 1.2E-06 29.3 2.6 18 80-97 6-23 (24)
153 KOG0282 mRNA splicing factor [ 94.2 0.97 2.1E-05 43.2 12.2 103 150-272 260-362 (503)
154 KOG1539 WD repeat protein [Gen 94.2 2.2 4.9E-05 43.6 15.2 165 80-270 450-635 (910)
155 PF07494 Reg_prop: Two compone 94.0 0.058 1.3E-06 29.2 2.4 17 255-271 7-23 (24)
156 PF14517 Tachylectin: Tachylec 94.0 0.55 1.2E-05 41.1 9.6 115 64-196 66-207 (229)
157 KOG1273 WD40 repeat protein [G 94.0 4.8 0.0001 36.8 22.4 174 81-272 68-269 (405)
158 PF14517 Tachylectin: Tachylec 93.8 3.2 7E-05 36.3 13.9 149 66-236 22-205 (229)
159 KOG2110 Uncharacterized conser 93.6 3.6 7.9E-05 38.2 14.4 134 188-360 107-248 (391)
160 PTZ00421 coronin; Provisional 93.5 8.7 0.00019 38.1 23.6 71 150-238 127-199 (493)
161 KOG0263 Transcription initiati 93.4 2.2 4.7E-05 43.1 13.7 133 184-359 514-648 (707)
162 COG3823 Glutamine cyclotransfe 93.2 5.2 0.00011 34.5 17.4 133 187-359 111-258 (262)
163 KOG0272 U4/U6 small nuclear ri 93.1 7.9 0.00017 36.6 17.3 103 149-272 304-407 (459)
164 KOG0282 mRNA splicing factor [ 93.0 2.4 5.3E-05 40.6 12.7 132 118-272 313-452 (503)
165 TIGR02276 beta_rpt_yvtn 40-res 93.0 0.44 9.6E-06 29.2 5.6 30 186-215 13-42 (42)
166 KOG2321 WD40 repeat protein [G 92.9 3.5 7.6E-05 40.5 13.8 168 82-272 137-334 (703)
167 KOG0286 G-protein beta subunit 92.8 7.1 0.00015 35.3 18.2 102 151-272 189-293 (343)
168 PF00058 Ldl_recept_b: Low-den 92.8 0.47 1E-05 29.6 5.4 41 160-216 1-42 (42)
169 COG4247 Phy 3-phytase (myo-ino 92.6 4.6 0.0001 35.8 12.9 83 188-273 127-226 (364)
170 KOG0293 WD40 repeat-containing 92.5 9.7 0.00021 36.1 18.0 98 151-269 272-371 (519)
171 PF00058 Ldl_recept_b: Low-den 92.4 0.55 1.2E-05 29.3 5.4 40 220-262 2-42 (42)
172 KOG1407 WD40 repeat protein [F 92.4 3.7 7.9E-05 36.5 12.1 117 188-321 88-205 (313)
173 KOG0315 G-protein beta subunit 92.3 7.6 0.00017 34.4 20.4 104 150-272 126-235 (311)
174 KOG2139 WD40 repeat protein [G 92.3 3.4 7.3E-05 38.4 12.2 104 149-272 196-301 (445)
175 KOG0772 Uncharacterized conser 92.0 13 0.00028 36.3 18.6 118 136-272 305-429 (641)
176 KOG2321 WD40 repeat protein [G 91.9 10 0.00022 37.5 15.4 97 119-238 148-259 (703)
177 PF02897 Peptidase_S9_N: Proly 91.7 13 0.00028 35.7 21.0 85 186-272 149-247 (414)
178 KOG2139 WD40 repeat protein [G 91.7 11 0.00024 35.1 19.9 107 151-275 241-368 (445)
179 TIGR03074 PQQ_membr_DH membran 91.7 19 0.00042 37.7 20.6 46 89-135 194-280 (764)
180 KOG0310 Conserved WD40 repeat- 91.6 13 0.00029 35.7 21.8 206 80-350 70-300 (487)
181 KOG1538 Uncharacterized conser 91.6 7.3 0.00016 39.2 14.4 67 148-235 12-80 (1081)
182 PF08553 VID27: VID27 cytoplas 91.6 4.5 9.7E-05 42.1 13.7 141 76-236 478-646 (794)
183 PF06433 Me-amine-dh_H: Methyl 91.2 8.6 0.00019 35.8 13.9 20 88-107 194-214 (342)
184 PF00930 DPPIV_N: Dipeptidyl p 91.1 14 0.00029 34.9 18.2 82 186-272 259-347 (353)
185 PF08662 eIF2A: Eukaryotic tra 91.1 9 0.00019 32.7 16.0 75 150-239 102-181 (194)
186 PTZ00420 coronin; Provisional 90.9 19 0.00042 36.3 25.7 71 150-238 127-198 (568)
187 KOG2919 Guanine nucleotide-bin 90.7 6.8 0.00015 35.9 12.3 133 187-359 133-280 (406)
188 PRK13616 lipoprotein LpqB; Pro 90.6 21 0.00046 36.2 21.8 152 154-350 402-559 (591)
189 KOG2048 WD40 repeat protein [G 90.4 21 0.00046 35.9 20.5 171 78-272 69-266 (691)
190 KOG0289 mRNA splicing factor [ 90.4 17 0.00037 34.7 16.1 59 209-272 350-408 (506)
191 smart00135 LY Low-density lipo 90.2 0.81 1.7E-05 28.0 4.6 32 76-107 6-40 (43)
192 KOG0283 WD40 repeat-containing 90.2 21 0.00046 36.5 16.5 74 149-240 410-484 (712)
193 KOG1407 WD40 repeat protein [F 90.1 13 0.00029 33.1 20.7 160 78-268 20-205 (313)
194 KOG4378 Nuclear protein COP1 [ 90.0 20 0.00043 34.9 18.0 60 209-272 211-270 (673)
195 KOG0271 Notchless-like WD40 re 90.0 11 0.00023 35.5 13.1 69 151-237 118-187 (480)
196 KOG0647 mRNA export protein (c 90.0 15 0.00032 33.4 15.4 60 206-270 251-311 (347)
197 TIGR02276 beta_rpt_yvtn 40-res 89.7 1.3 2.8E-05 27.0 5.3 42 216-261 1-42 (42)
198 KOG0265 U5 snRNP-specific prot 89.1 17 0.00038 33.0 14.1 131 84-236 53-203 (338)
199 PLN00181 protein SPA1-RELATED; 88.9 34 0.00074 36.1 28.9 164 82-271 536-727 (793)
200 KOG2110 Uncharacterized conser 88.5 21 0.00046 33.3 14.9 69 151-237 176-248 (391)
201 KOG1539 WD repeat protein [Gen 88.3 8.4 0.00018 39.6 12.2 133 81-235 496-646 (910)
202 COG5276 Uncharacterized conser 88.2 20 0.00044 32.7 18.9 102 113-239 93-201 (370)
203 PF11763 DIPSY: Cell-wall adhe 88.1 10 0.00022 29.1 9.9 83 79-166 4-99 (123)
204 KOG3881 Uncharacterized conser 88.0 3.1 6.8E-05 38.8 8.4 105 161-270 202-308 (412)
205 KOG4378 Nuclear protein COP1 [ 87.6 16 0.00035 35.5 13.0 70 151-239 211-282 (673)
206 KOG0286 G-protein beta subunit 87.6 22 0.00047 32.3 26.1 226 73-357 50-300 (343)
207 COG3490 Uncharacterized protei 87.5 8.8 0.00019 34.8 10.5 141 188-349 92-244 (366)
208 KOG0293 WD40 repeat-containing 87.4 27 0.00059 33.2 15.1 85 183-272 330-415 (519)
209 PHA02713 hypothetical protein; 86.8 37 0.00081 34.2 18.4 36 187-225 367-405 (557)
210 TIGR03074 PQQ_membr_DH membran 86.7 45 0.00097 35.1 19.1 114 89-202 260-429 (764)
211 PHA02713 hypothetical protein; 86.1 41 0.00088 34.0 16.3 49 187-238 432-489 (557)
212 KOG0639 Transducin-like enhanc 85.8 16 0.00034 35.6 11.9 103 150-272 511-622 (705)
213 COG0823 TolB Periplasmic compo 85.6 24 0.00052 34.2 13.6 75 187-265 218-294 (425)
214 KOG0316 Conserved WD40 repeat- 85.4 25 0.00055 31.0 16.6 158 83-270 22-201 (307)
215 KOG0263 Transcription initiati 85.1 48 0.001 33.9 17.8 83 186-272 556-639 (707)
216 KOG0268 Sof1-like rRNA process 84.9 17 0.00036 34.0 11.2 51 186-237 209-259 (433)
217 KOG4441 Proteins containing BT 84.8 31 0.00068 34.9 14.5 133 89-238 332-500 (571)
218 KOG4547 WD40 repeat-containing 84.7 30 0.00065 34.2 13.5 87 183-272 76-164 (541)
219 KOG0646 WD40 repeat protein [G 84.7 39 0.00085 32.5 20.0 50 187-237 198-247 (476)
220 PF06739 SBBP: Beta-propeller 84.6 0.8 1.7E-05 27.9 2.0 17 149-165 13-29 (38)
221 KOG0285 Pleiotropic regulator 83.6 39 0.00084 31.6 18.4 84 78-166 151-253 (460)
222 KOG0288 WD40 repeat protein Ti 83.4 39 0.00084 32.1 13.1 59 151-226 390-451 (459)
223 PF05935 Arylsulfotrans: Aryls 83.3 50 0.0011 32.6 15.5 147 186-358 127-299 (477)
224 PF01731 Arylesterase: Arylest 83.3 4.7 0.0001 29.5 5.9 21 148-168 53-74 (86)
225 PF06739 SBBP: Beta-propeller 83.0 1.1 2.3E-05 27.3 2.0 19 254-272 14-32 (38)
226 PRK10115 protease 2; Provision 82.6 65 0.0014 33.5 18.6 51 186-239 152-209 (686)
227 KOG0646 WD40 repeat protein [G 82.4 49 0.0011 31.9 17.5 114 221-359 191-306 (476)
228 KOG0643 Translation initiation 82.4 37 0.0008 30.5 20.7 68 202-272 143-210 (327)
229 KOG0640 mRNA cleavage stimulat 82.2 41 0.00088 30.9 13.3 114 207-358 173-289 (430)
230 KOG0292 Vesicle coat complex C 81.6 76 0.0016 33.5 21.8 122 78-225 250-384 (1202)
231 KOG2096 WD40 repeat protein [G 80.8 47 0.001 30.6 14.3 72 150-238 88-164 (420)
232 PRK13616 lipoprotein LpqB; Pro 80.7 70 0.0015 32.6 18.2 71 150-240 449-530 (591)
233 COG0823 TolB Periplasmic compo 80.3 60 0.0013 31.6 18.7 49 188-236 307-357 (425)
234 PF05694 SBP56: 56kDa selenium 80.3 7.2 0.00016 37.5 7.4 65 208-272 313-394 (461)
235 PF14870 PSII_BNR: Photosynthe 80.0 50 0.0011 30.5 24.3 172 116-351 114-296 (302)
236 KOG0275 Conserved WD40 repeat- 79.9 24 0.00053 32.4 10.2 83 117-219 406-492 (508)
237 PF09826 Beta_propel: Beta pro 79.5 71 0.0015 32.0 14.8 103 230-359 249-354 (521)
238 PF05935 Arylsulfotrans: Aryls 78.9 70 0.0015 31.6 17.7 86 116-225 113-208 (477)
239 KOG1408 WD40 repeat protein [F 78.8 65 0.0014 33.1 13.5 78 188-268 619-709 (1080)
240 PF13570 PQQ_3: PQQ-like domai 78.5 3.2 7E-05 25.2 3.2 20 85-105 18-37 (40)
241 smart00284 OLF Olfactomedin-li 78.3 50 0.0011 29.6 17.2 61 160-236 186-251 (255)
242 KOG1445 Tumor-specific antigen 78.1 10 0.00022 38.0 7.8 70 150-236 722-797 (1012)
243 KOG1273 WD40 repeat protein [G 78.0 57 0.0012 30.1 16.5 151 151-359 68-225 (405)
244 smart00564 PQQ beta-propeller 78.0 4 8.7E-05 23.3 3.4 20 89-108 6-27 (33)
245 PF14269 Arylsulfotran_2: Aryl 78.0 57 0.0012 30.0 12.7 116 116-239 154-291 (299)
246 KOG0303 Actin-binding protein 77.8 65 0.0014 30.6 14.5 53 185-238 152-204 (472)
247 KOG0310 Conserved WD40 repeat- 77.3 46 0.001 32.2 11.7 67 151-235 71-138 (487)
248 KOG0299 U3 snoRNP-associated p 75.9 73 0.0016 30.8 12.5 49 188-236 405-455 (479)
249 KOG4328 WD40 protein [Function 74.5 86 0.0019 30.3 17.4 28 208-236 371-398 (498)
250 KOG1272 WD40-repeat-containing 73.9 90 0.002 30.3 13.3 209 79-293 130-380 (545)
251 KOG0973 Histone transcription 73.7 46 0.001 35.3 11.6 67 150-235 131-198 (942)
252 KOG0319 WD40-repeat-containing 73.3 1.2E+02 0.0025 31.3 18.8 133 84-238 25-180 (775)
253 KOG0296 Angio-associated migra 73.2 83 0.0018 29.5 21.9 96 221-359 300-397 (399)
254 KOG2395 Protein involved in va 73.0 77 0.0017 31.4 12.1 97 120-236 398-499 (644)
255 KOG1215 Low-density lipoprotei 72.2 1.4E+02 0.0031 31.9 17.8 179 116-354 448-633 (877)
256 PHA02790 Kelch-like protein; P 71.5 1.1E+02 0.0024 30.2 14.2 110 89-225 318-453 (480)
257 KOG0641 WD40 repeat protein [G 71.4 70 0.0015 28.0 14.3 139 91-247 164-313 (350)
258 KOG0283 WD40 repeat-containing 70.7 1.4E+02 0.0029 31.0 14.0 115 205-359 408-531 (712)
259 KOG0313 Microtubule binding pr 70.2 99 0.0022 29.2 12.7 137 78-237 193-376 (423)
260 PF01011 PQQ: PQQ enzyme repea 66.8 8.9 0.00019 23.0 3.1 15 91-105 2-16 (38)
261 KOG0268 Sof1-like rRNA process 66.6 1.2E+02 0.0025 28.6 13.1 60 208-271 189-248 (433)
262 COG5276 Uncharacterized conser 66.1 1.1E+02 0.0024 28.1 22.0 158 89-272 96-276 (370)
263 KOG0918 Selenium-binding prote 65.8 17 0.00037 34.4 6.0 99 89-195 323-434 (476)
264 KOG0316 Conserved WD40 repeat- 65.6 98 0.0021 27.4 17.9 80 187-271 81-162 (307)
265 KOG2919 Guanine nucleotide-bin 63.9 1.3E+02 0.0027 28.0 14.3 29 209-237 253-281 (406)
266 PF14339 DUF4394: Domain of un 63.7 1.1E+02 0.0023 27.2 11.9 17 219-235 145-161 (236)
267 KOG0273 Beta-transducin family 62.7 1.6E+02 0.0034 28.8 14.7 68 150-235 454-521 (524)
268 KOG0299 U3 snoRNP-associated p 62.5 1.5E+02 0.0033 28.6 19.2 130 83-236 207-355 (479)
269 KOG2315 Predicted translation 61.8 1.7E+02 0.0038 29.0 15.0 79 187-272 251-332 (566)
270 KOG0650 WD40 repeat nucleolar 60.9 1.9E+02 0.0041 29.2 17.0 65 205-272 520-587 (733)
271 KOG3621 WD40 repeat-containing 60.6 1.1E+02 0.0024 31.3 10.8 20 149-168 125-145 (726)
272 KOG1188 WD40 repeat protein [G 60.3 1.5E+02 0.0032 27.7 12.2 140 184-359 47-195 (376)
273 KOG4547 WD40 repeat-containing 59.2 1.9E+02 0.0042 28.7 14.9 78 117-217 115-195 (541)
274 KOG3914 WD repeat protein WDR4 59.2 1.6E+02 0.0034 28.0 10.9 39 197-236 142-180 (390)
275 KOG1538 Uncharacterized conser 58.7 2.2E+02 0.0048 29.2 21.3 57 209-270 179-241 (1081)
276 KOG0771 Prolactin regulatory e 58.3 1.7E+02 0.0037 27.8 14.4 62 205-269 280-341 (398)
277 KOG1036 Mitotic spindle checkp 57.2 1.6E+02 0.0034 27.1 16.1 66 153-237 59-124 (323)
278 KOG0296 Angio-associated migra 56.3 1.8E+02 0.0039 27.4 20.9 55 183-238 166-221 (399)
279 COG4447 Uncharacterized protei 56.2 1.6E+02 0.0035 26.8 15.1 29 205-235 169-197 (339)
280 KOG4441 Proteins containing BT 56.1 2.3E+02 0.0051 28.7 16.5 51 187-239 396-454 (571)
281 PF08309 LVIVD: LVIVD repeat; 55.2 40 0.00086 20.9 4.5 24 109-132 4-27 (42)
282 TIGR03548 mutarot_permut cycli 53.0 1.9E+02 0.004 26.6 18.9 52 186-238 138-195 (323)
283 PRK14131 N-acetylneuraminic ac 52.9 2.1E+02 0.0045 27.1 16.6 17 187-203 189-205 (376)
284 KOG0281 Beta-TrCP (transducin 52.6 99 0.0021 28.9 8.4 28 206-236 320-347 (499)
285 PLN02153 epithiospecifier prot 52.2 2E+02 0.0043 26.7 19.0 17 187-203 101-117 (341)
286 KOG1036 Mitotic spindle checkp 51.5 2E+02 0.0043 26.5 13.6 128 84-237 19-163 (323)
287 PF02897 Peptidase_S9_N: Proly 51.4 2.2E+02 0.0048 27.1 17.7 84 187-272 202-296 (414)
288 PF15416 DUF4623: Domain of un 51.3 2.1E+02 0.0046 26.8 17.5 102 127-240 157-274 (442)
289 KOG0264 Nucleosome remodeling 50.8 2.4E+02 0.0051 27.2 12.5 72 150-237 274-347 (422)
290 PF00930 DPPIV_N: Dipeptidyl p 50.6 2.2E+02 0.0047 26.7 11.1 57 154-224 286-345 (353)
291 PHA02790 Kelch-like protein; P 50.3 2.6E+02 0.0057 27.5 18.7 50 187-238 331-385 (480)
292 PF04053 Coatomer_WDAD: Coatom 49.7 2.6E+02 0.0057 27.3 20.1 135 79-237 33-175 (443)
293 COG4247 Phy 3-phytase (myo-ino 49.4 2E+02 0.0043 25.9 21.5 29 208-237 206-234 (364)
294 COG5167 VID27 Protein involved 49.1 2.9E+02 0.0062 27.6 11.6 135 79-236 467-631 (776)
295 PF02191 OLF: Olfactomedin-lik 48.3 2E+02 0.0044 25.6 16.6 62 159-236 180-246 (250)
296 KOG0284 Polyadenylation factor 47.8 2.6E+02 0.0057 26.8 11.8 68 151-236 141-209 (464)
297 KOG0281 Beta-TrCP (transducin 47.3 2.5E+02 0.0054 26.4 11.1 49 188-238 341-389 (499)
298 PF11768 DUF3312: Protein of u 47.0 1E+02 0.0022 30.7 8.2 53 183-237 277-329 (545)
299 KOG2096 WD40 repeat protein [G 46.3 2.5E+02 0.0054 26.1 19.9 20 253-272 332-351 (420)
300 PF10647 Gmad1: Lipoprotein Lp 45.8 2.2E+02 0.0047 25.3 20.9 102 155-272 72-185 (253)
301 KOG0973 Histone transcription 45.2 2.6E+02 0.0057 30.0 11.1 63 208-274 131-193 (942)
302 KOG0292 Vesicle coat complex C 44.6 4.3E+02 0.0093 28.4 20.4 18 255-272 454-471 (1202)
303 KOG3567 Peptidylglycine alpha- 44.5 34 0.00073 33.1 4.3 20 253-272 467-486 (501)
304 KOG2395 Protein involved in va 44.2 3.4E+02 0.0074 27.1 13.3 44 308-352 404-452 (644)
305 PF00400 WD40: WD domain, G-be 44.0 63 0.0014 18.6 5.6 29 206-235 11-39 (39)
306 KOG1310 WD40 repeat protein [G 43.9 3E+02 0.0065 27.6 10.5 108 149-274 51-171 (758)
307 PF15416 DUF4623: Domain of un 43.9 2.8E+02 0.006 26.0 10.9 20 341-360 252-271 (442)
308 KOG0303 Actin-binding protein 43.8 3E+02 0.0065 26.4 14.1 35 205-239 259-296 (472)
309 PF14298 DUF4374: Domain of un 43.3 3.2E+02 0.007 26.6 12.2 15 151-165 277-291 (435)
310 KOG2394 WD40 protein DMR-N9 [G 43.2 3.5E+02 0.0077 27.0 11.2 58 207-269 291-349 (636)
311 KOG2394 WD40 protein DMR-N9 [G 41.6 1E+02 0.0022 30.6 7.0 57 150-223 292-349 (636)
312 PHA03098 kelch-like protein; P 40.9 3.8E+02 0.0081 26.6 20.7 50 187-238 406-465 (534)
313 PF11837 DUF3357: Domain of un 40.3 9.4 0.0002 29.2 0.0 15 14-28 23-37 (106)
314 KOG0918 Selenium-binding prote 39.9 94 0.002 29.7 6.3 62 210-271 315-408 (476)
315 KOG0273 Beta-transducin family 39.7 3.8E+02 0.0081 26.3 24.8 29 79-107 236-266 (524)
316 PLN03160 uncharacterized prote 39.4 15 0.00033 32.0 1.2 14 14-27 31-44 (219)
317 PF13964 Kelch_6: Kelch motif 38.2 58 0.0013 20.4 3.6 36 157-203 9-44 (50)
318 KOG1009 Chromatin assembly com 37.7 91 0.002 29.7 5.9 55 187-242 321-377 (434)
319 KOG1009 Chromatin assembly com 37.7 3.8E+02 0.0081 25.7 10.7 58 207-268 124-181 (434)
320 PLN02193 nitrile-specifier pro 37.7 4.1E+02 0.0088 26.1 20.5 50 187-238 244-303 (470)
321 COG4993 Gcd Glucose dehydrogen 37.5 1.3E+02 0.0029 30.5 7.2 21 115-135 213-234 (773)
322 KOG0276 Vesicle coat complex C 37.3 4.7E+02 0.01 26.7 19.1 49 186-236 443-491 (794)
323 TIGR02608 delta_60_rpt delta-6 35.3 1.1E+02 0.0023 20.3 4.4 41 257-324 5-45 (55)
324 KOG0771 Prolactin regulatory e 35.1 4.1E+02 0.0089 25.4 12.7 28 207-236 187-214 (398)
325 KOG0285 Pleiotropic regulator 34.7 4E+02 0.0088 25.2 16.3 106 109-236 154-264 (460)
326 PF14298 DUF4374: Domain of un 34.1 4.5E+02 0.0098 25.6 11.7 14 83-96 279-292 (435)
327 COG1770 PtrB Protease II [Amin 34.0 5.5E+02 0.012 26.5 18.0 74 149-238 129-209 (682)
328 KOG0308 Conserved WD40 repeat- 33.8 5.4E+02 0.012 26.4 11.5 131 122-270 136-283 (735)
329 KOG0295 WD40 repeat-containing 33.4 4.2E+02 0.0092 25.1 17.2 18 255-272 337-354 (406)
330 PLN02153 epithiospecifier prot 32.9 4E+02 0.0087 24.6 17.5 17 187-203 159-175 (341)
331 KOG2314 Translation initiation 32.5 1.6E+02 0.0035 29.4 6.9 63 207-272 493-557 (698)
332 PF13970 DUF4221: Domain of un 32.1 4.1E+02 0.009 24.5 11.1 98 217-349 54-164 (333)
333 PF07676 PD40: WD40-like Beta 31.6 1.1E+02 0.0024 17.9 4.4 19 209-227 11-29 (39)
334 KOG1517 Guanine nucleotide bin 31.4 7.5E+02 0.016 27.3 18.2 115 209-358 1259-1379(1387)
335 KOG1645 RING-finger-containing 30.8 1.8E+02 0.004 27.8 6.7 81 189-273 175-258 (463)
336 KOG1215 Low-density lipoprotei 30.2 7.1E+02 0.015 26.7 13.9 68 202-272 475-543 (877)
337 smart00284 OLF Olfactomedin-li 29.9 4.1E+02 0.0089 23.8 14.2 15 186-200 93-107 (255)
338 KOG0319 WD40-repeat-containing 29.6 6.6E+02 0.014 26.1 22.9 164 89-272 293-483 (775)
339 PRK13159 cytochrome c-type bio 29.5 2.3E+02 0.0049 23.3 6.3 12 78-89 59-70 (155)
340 PF12894 Apc4_WD40: Anaphase-p 29.3 1.4E+02 0.0031 18.9 4.2 31 209-240 14-44 (47)
341 PF15176 LRR19-TM: Leucine-ric 27.7 49 0.0011 24.8 2.0 29 18-49 14-42 (102)
342 PF08553 VID27: VID27 cytoplas 27.7 7.7E+02 0.017 26.2 16.8 89 186-279 503-604 (794)
343 KOG3621 WD40 repeat-containing 26.6 2.2E+02 0.0047 29.3 6.8 89 183-272 51-145 (726)
344 KOG1272 WD40-repeat-containing 25.8 1.8E+02 0.0039 28.4 5.8 34 150-201 131-165 (545)
345 KOG2114 Vacuolar assembly/sort 25.5 8.4E+02 0.018 26.0 15.5 62 210-272 129-193 (933)
346 PRK13717 conjugal transfer pro 25.3 1.1E+02 0.0023 24.2 3.6 15 13-27 12-26 (128)
347 PF14251 DUF4346: Domain of un 25.0 2.7E+02 0.0057 21.7 5.6 20 209-228 42-61 (119)
348 KOG0649 WD40 repeat protein [G 24.6 5.2E+02 0.011 23.2 21.5 72 147-238 113-187 (325)
349 smart00706 TECPR Beta propelle 24.6 1.4E+02 0.003 17.2 3.3 25 80-104 9-33 (35)
350 KOG0272 U4/U6 small nuclear ri 24.3 6.6E+02 0.014 24.3 14.3 70 149-235 346-416 (459)
351 KOG1963 WD40 repeat protein [G 24.2 8.7E+02 0.019 25.7 13.6 131 83-236 210-374 (792)
352 KOG0288 WD40 repeat protein Ti 24.0 6.6E+02 0.014 24.2 18.0 52 186-238 321-372 (459)
353 KOG3881 Uncharacterized conser 23.1 6.7E+02 0.014 24.0 17.3 106 210-356 206-315 (412)
354 COG5167 VID27 Protein involved 23.0 3.7E+02 0.0081 26.8 7.4 45 308-352 537-584 (776)
355 PHA03098 kelch-like protein; P 23.0 7.5E+02 0.016 24.5 20.8 50 187-238 358-415 (534)
356 COG1580 FliL Flagellar basal b 22.3 1.4E+02 0.0031 24.6 4.1 17 11-27 9-25 (159)
357 PF11807 DUF3328: Domain of un 22.3 77 0.0017 26.8 2.7 12 13-24 2-13 (217)
358 TIGR02554 PrgH type III secret 22.1 97 0.0021 29.7 3.4 27 69-96 169-195 (389)
359 COG4993 Gcd Glucose dehydrogen 22.1 8.8E+02 0.019 25.0 18.0 70 65-135 182-292 (773)
360 TIGR03548 mutarot_permut cycli 21.8 6.2E+02 0.013 23.1 12.9 51 187-238 88-148 (323)
361 KOG0650 WD40 repeat nucleolar 21.6 8.7E+02 0.019 24.8 12.6 70 207-283 567-639 (733)
362 KOG3914 WD repeat protein WDR4 21.6 7.1E+02 0.015 23.8 13.9 105 150-272 64-181 (390)
363 COG4590 ABC-type uncharacteriz 21.3 8E+02 0.017 24.2 10.3 102 210-323 224-344 (733)
364 PF05567 Neisseria_PilC: Neiss 21.1 1.8E+02 0.004 27.2 5.1 52 187-239 181-241 (335)
365 TIGR02171 Fb_sc_TIGR02171 Fibr 20.7 1.1E+03 0.023 25.5 12.0 85 188-274 330-423 (912)
366 KOG0306 WD40-repeat-containing 20.6 1E+03 0.022 25.1 19.8 60 209-272 511-570 (888)
367 KOG1230 Protein containing rep 20.5 8E+02 0.017 23.9 10.5 12 257-268 236-247 (521)
368 KOG0322 G-protein beta subunit 20.3 2.6E+02 0.0056 25.3 5.4 67 150-234 253-320 (323)
369 PF11725 AvrE: Pathogenicity f 20.1 6.2E+02 0.013 29.3 9.1 30 205-237 487-516 (1774)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=5.4e-48 Score=348.06 Aligned_cols=299 Identities=31% Similarity=0.550 Sum_probs=255.3
Q ss_pred ccchhcccceEecCCCCC-CcceEEEcCCCCEEEEecCCeEEEEEC-C--------------------eeeEEE--ecCC
Q 018144 62 LSATQLQDFIKVGEGSVN-HPEDASMDKNGVIYTATRDGWIKRLQD-G--------------------TWVNWK--FIDS 117 (360)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~-~Pe~i~~d~~G~l~v~~~~G~I~~~~~-g--------------------~~~~~~--~~~g 117 (360)
.+++.+...+.+..+... +|+.++.|.+-.+|.|...|.|-+.+. . +.-.++ ..+|
T Consensus 48 ~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~gg 127 (376)
T KOG1520|consen 48 IPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGG 127 (376)
T ss_pred ccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCC
Confidence 556656666655544454 444444443334788888898877651 0 000111 2245
Q ss_pred eEEEEeCCCcEEEEcC-CC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 118 HLIICDNANGLHKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 118 ~L~v~~~~~gl~~~~~-~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
.|||||++.|++.++. .| .+.+++..++.++.+.|+++++++|.|||||+|++|+++++.+++++++++||+++||+.
T Consensus 128 dL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~ 207 (376)
T KOG1520|consen 128 DLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS 207 (376)
T ss_pred eEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCc
Confidence 8999999999999994 55 777788889999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCch
Q 018144 196 SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA 275 (360)
Q Consensus 196 tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~ 275 (360)
|+..+++.+++.+|||+++++|++++++||+...||.||+++|++.++.++|++++||+||||..+++|++||++...|+
T Consensus 208 tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~ 287 (376)
T KOG1520|consen 208 TKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRS 287 (376)
T ss_pred ccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred hHHHHhhcchhHHHHHHhCCcccccccc----CCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 276 RRMKILNSSKLIKHVLAAYPKLFSQFIT----LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 276 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~----~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
...+++.++|++|+++.++|........ ..++..|.+.|.+|+++++++|++|.....++.+.|++|+||+||+..
T Consensus 288 ~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~ 367 (376)
T KOG1520|consen 288 TLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLFN 367 (376)
T ss_pred hHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccCc
Confidence 9999999999999999999766543221 223477888889999999999999998888999999999999999999
Q ss_pred CeEEEEeCC
Q 018144 352 NFIGKVQLS 360 (360)
Q Consensus 352 ~~i~~~~l~ 360 (360)
++|++++|.
T Consensus 368 p~i~~lkl~ 376 (376)
T KOG1520|consen 368 PYIARLKLP 376 (376)
T ss_pred ceeEEEecC
Confidence 999999984
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.96 E-value=1.9e-26 Score=206.75 Aligned_cols=220 Identities=29% Similarity=0.450 Sum_probs=170.0
Q ss_pred cceEEEcC-CCCEEEEe-cCCeEEEEE--CCeeeEEE---------e-cCCeEEEEeCCCcEEEEc-CCC-eEEEeeccC
Q 018144 81 PEDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWK---------F-IDSHLIICDNANGLHKVS-EDG-VENFLSYVN 144 (360)
Q Consensus 81 Pe~i~~d~-~G~l~v~~-~~G~I~~~~--~g~~~~~~---------~-~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~ 144 (360)
||++++|+ +|.||+.+ .++.|++++ +++.+.+. . .+|+|||++. .++..++ .++ ++.+.....
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEET
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccC
Confidence 79999997 99999999 789999999 44433221 2 4789999985 5677778 778 777766543
Q ss_pred Cc-cccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEE
Q 018144 145 GS-KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 223 (360)
Q Consensus 145 ~~-~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v 223 (360)
+. .+..||++++|++|+|||||+...... ....|+|++++++ ++++.+..++..||||++++|++.||+
T Consensus 81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp TCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEE
T ss_pred CCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchheee
Confidence 43 678999999999999999997632110 0011789999998 888888888999999999999999999
Q ss_pred EeCCCCEEEEEEecCC--cCcceeeeccC--CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccc
Q 018144 224 CESWKFRCRKYWLKGE--RKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 299 (360)
Q Consensus 224 ~~t~~~~i~~~~~~g~--~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 299 (360)
+++..++|++|+++.. .....+.+.+. ..+.|||+++|.+|+|||+.+.
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~--------------------------- 203 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG--------------------------- 203 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---------------------------
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---------------------------
Confidence 9999999999999743 24455555432 2346999999999999999987
Q ss_pred ccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE--C-CEEEEEeC
Q 018144 300 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--D-NHLYVISL 349 (360)
Q Consensus 300 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~-g~Lylgs~ 349 (360)
.+.|.+++++|+++..+..|.. .++++++. + ++|||.+-
T Consensus 204 -------~~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 204 -------GGRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -------TTEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred -------CCEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence 4799999999999999988732 57888885 3 78999874
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.6e-25 Score=201.04 Aligned_cols=237 Identities=27% Similarity=0.413 Sum_probs=176.9
Q ss_pred hhcccceEecCCCCCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeEEEe-----------cCCeEEEEeCCCcEEE
Q 018144 65 TQLQDFIKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKF-----------IDSHLIICDNANGLHK 130 (360)
Q Consensus 65 ~~l~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~~~~-----------~~g~L~v~~~~~gl~~ 130 (360)
..+.....+++++++.|+ .+.||+.+ .+++|.+++ +|+.+.+.. .+|+|+++. .|+..
T Consensus 18 ~~~~~~~~~gEgP~w~~~------~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~ 89 (307)
T COG3386 18 TLLDKGATLGEGPVWDPD------RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE--HGVRL 89 (307)
T ss_pred eEeecccccccCccCcCC------CCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc--cccEE
Confidence 445556667777776664 66677777 889999999 576665543 356677765 45555
Q ss_pred Ec-CCC-e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-C
Q 018144 131 VS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F 206 (360)
Q Consensus 131 ~~-~~g-~-~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l 206 (360)
++ +++ . +.+++..++.+.+.+|++.++++|.+||+|.+. +. ....+..+.|.||++||. ++++.+..+ +
T Consensus 90 ~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~ 162 (307)
T COG3386 90 LDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPD-GGVVRLLDDDL 162 (307)
T ss_pred EeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCC-CCEEEeecCcE
Confidence 66 555 5 777777777778999999999999999999873 11 222344567899999996 555555555 9
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEec---CCcCcc-eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhh
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWLK---GERKGK-LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILN 282 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~~---g~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~ 282 (360)
..||||++||||+.+|+++|..++|++|+.+ +...+. ..++.+..+|.|||+++|.+|+||++....
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~--------- 233 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG--------- 233 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---------
Confidence 9999999999999999999999999999987 332222 123344567999999999999999643331
Q ss_pred cchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEEC---CEEEEEeCCCCe
Q 018144 283 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTSNF 353 (360)
Q Consensus 283 ~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~---g~Lylgs~~~~~ 353 (360)
.++|.+++|+|+.+..+..|.. .+++..+.+ ++||+.+...+.
T Consensus 234 ------------------------g~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 234 ------------------------GGRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred ------------------------CceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCCC
Confidence 2489999999999999998863 466667765 889999987743
No 4
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.85 E-value=2.1e-21 Score=142.76 Aligned_cols=88 Identities=52% Similarity=0.965 Sum_probs=74.6
Q ss_pred ccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE
Q 018144 152 NDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 230 (360)
Q Consensus 152 n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~ 230 (360)
|+++++++ |.|||||+|++|.++++..+++++.++|+|++|||.|++++++.+++.+||||++++|+++++|+|+...|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 68999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC
Q 018144 231 CRKYWLKGE 239 (360)
Q Consensus 231 i~~~~~~g~ 239 (360)
|.|||++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999874
No 5
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.82 E-value=4.8e-18 Score=146.59 Aligned_cols=227 Identities=17% Similarity=0.137 Sum_probs=169.6
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeEEE------------ecCCeEEEEeCCCcEEEEc-CCC-
Q 018144 73 VGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWK------------FIDSHLIICDNANGLHKVS-EDG- 135 (360)
Q Consensus 73 ~~~~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~~~------------~~~g~L~v~~~~~gl~~~~-~~g- 135 (360)
.+...-.+|..++.++||.+|++. ..|.|-++| +|+++.+. .++|..||++...+|.+++ ++.
T Consensus 56 fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~e 135 (353)
T COG4257 56 FPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLE 135 (353)
T ss_pred eccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccc
Confidence 443334799999999999999988 677889999 78776542 3578899999888999999 677
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEE
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVAL 214 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~ 214 (360)
++.+.-..+.. -...|...+|++|++|||-.. |---++||.++.++++.. ....|+||+.
T Consensus 136 vt~f~lp~~~a-~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~a 196 (353)
T COG4257 136 VTRFPLPLEHA-DANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICA 196 (353)
T ss_pred eEEeecccccC-CCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEE
Confidence 77764322111 123567789999999998532 333488998888877643 4567999999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC--CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 292 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~ 292 (360)
.+||+ +|+++-.++.|.++|+.. +..+++... +..-...|-.|+.|++|+++++
T Consensus 197 tpdGs-vwyaslagnaiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~wittwg-------------------- 252 (353)
T COG4257 197 TPDGS-VWYASLAGNAIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG-------------------- 252 (353)
T ss_pred CCCCc-EEEEeccccceEEccccc---CCcceecCCCcccccccccccCccCcEEEeccC--------------------
Confidence 99997 888887788899998743 344444311 1112345778999999999987
Q ss_pred hCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEEC-CEEEEEeCCCCeEEEEe
Q 018144 293 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~-g~Lylgs~~~~~i~~~~ 358 (360)
.+.+.+|||.-+.-..|..|.-. ....++..++ |++|+.....++|.|++
T Consensus 253 --------------~g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 253 --------------TGSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred --------------CceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecC
Confidence 47899999988877788777643 3455566665 99999999999999986
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.76 E-value=9.2e-16 Score=161.80 Aligned_cols=234 Identities=19% Similarity=0.278 Sum_probs=164.9
Q ss_pred CCCCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CCeeeEE-------------------------Ee--cCCeEEEEeCC
Q 018144 76 GSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWVNW-------------------------KF--IDSHLIICDNA 125 (360)
Q Consensus 76 ~~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g~~~~~-------------------------~~--~~g~L~v~~~~ 125 (360)
.++..|.++++|. +|.||+++ .+++|.+++ +|+.... .. .++.|||+|..
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 4578999999996 68899999 788999998 6643211 11 13459999987
Q ss_pred C-cEEEEc-CCC-eEEEeec------cCC------ccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEE
Q 018144 126 N-GLHKVS-EDG-VENFLSY------VNG------SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 189 (360)
Q Consensus 126 ~-gl~~~~-~~g-~~~l~~~------~~~------~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l 189 (360)
+ .+.+++ .++ ++.++.. ..+ ..++.|.++++++ +|.+||+|.. +++|
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I 707 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQI 707 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCeE
Confidence 4 566788 667 6666421 111 1256899999998 7799999865 4567
Q ss_pred EEEcCCCCeEEEEe---------------CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcce----------
Q 018144 190 LKYDPSSNITTLVA---------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKL---------- 244 (360)
Q Consensus 190 ~~~d~~tg~~~~~~---------------~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~---------- 244 (360)
+++|+.++.+..+. ..+..|+||++++|++.+||+++.+++|.+|++++......
T Consensus 708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 77777666554332 12567999999999999999999999999999864321100
Q ss_pred -eeecc-------CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC
Q 018144 245 -ETFAE-------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 316 (360)
Q Consensus 245 -~~~~~-------~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 316 (360)
..+.+ ..-..|.++++|++|++||+... .+.|.++|++
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----------------------------------N~rIrviD~~ 833 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----------------------------------NHKIKKLDPA 833 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeCCCcEEEEECC----------------------------------CCEEEEEECC
Confidence 00000 01125899999999999999987 3688999987
Q ss_pred CcEEEEEeCC------CC----CcccceeeEEEE-CCEEEEEeCCCCeEEEEeCC
Q 018144 317 GTIIRNLVDP------TG----QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 317 g~~~~~~~~~------~g----~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l~ 360 (360)
+..+..+... +| ..++.+.++..+ +|+||+++..+++|.+++++
T Consensus 834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 6554443211 11 124567777776 58999999999999999863
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.70 E-value=8.6e-15 Score=126.61 Aligned_cols=225 Identities=12% Similarity=0.115 Sum_probs=166.1
Q ss_pred ccceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE--CCeeeEEE---------------ecCCeEEEEeCCCcEE-
Q 018144 68 QDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWK---------------FIDSHLIICDNANGLH- 129 (360)
Q Consensus 68 ~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~~---------------~~~g~L~v~~~~~gl~- 129 (360)
.++++++.+.-..|..|.+++||..|+.+....|.|++ +.+++.|. +..|+||.... .|.+
T Consensus 93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yG 171 (353)
T COG4257 93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYG 171 (353)
T ss_pred CceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccce
Confidence 56677777777899999999999999998666899998 66666553 23578888553 3333
Q ss_pred EEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC--C
Q 018144 130 KVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--G 205 (360)
Q Consensus 130 ~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~--~ 205 (360)
++| ..+ ++++... .| ..|++|++.+||.+|++.- ..+.|.++||.++..+++.. .
T Consensus 172 rLdPa~~~i~vfpaP-qG---~gpyGi~atpdGsvwyasl-----------------agnaiaridp~~~~aev~p~P~~ 230 (353)
T COG4257 172 RLDPARNVISVFPAP-QG---GGPYGICATPDGSVWYASL-----------------AGNAIARIDPFAGHAEVVPQPNA 230 (353)
T ss_pred ecCcccCceeeeccC-CC---CCCcceEECCCCcEEEEec-----------------cccceEEcccccCCcceecCCCc
Confidence 566 455 6666433 22 4699999999999999732 24579999998886665532 2
Q ss_pred -CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC---CCceeEEcCCCCEEEEEecCchhHHHHh
Q 018144 206 -FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG---APDNINLAPDGTFWIAIIKLDARRMKIL 281 (360)
Q Consensus 206 -l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g---~pd~i~~d~~G~lwva~~~~~~~~~~~~ 281 (360)
-....+|-.++.|. +|+++.++.++++|++.... ...+. +|+ .|+.+.+|..|++|.+...
T Consensus 231 ~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s---W~eyp--LPgs~arpys~rVD~~grVW~sea~--------- 295 (353)
T COG4257 231 LKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS---WIEYP--LPGSKARPYSMRVDRHGRVWLSEAD--------- 295 (353)
T ss_pred ccccccccccCccCc-EEEeccCCceeeEeCccccc---ceeee--CCCCCCCcceeeeccCCcEEeeccc---------
Confidence 12334577788886 99999999999999985432 22231 333 6899999999999998887
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEe
Q 018144 282 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 282 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~ 358 (360)
.+.|.+||+....+.+|..+... ...+..+ .|.+|++...-+.+.+++
T Consensus 296 -------------------------agai~rfdpeta~ftv~p~pr~n----~gn~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 296 -------------------------AGAIGRFDPETARFTVLPIPRPN----SGNIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred -------------------------cCceeecCcccceEEEecCCCCC----CCceeccCCCCceeecccCcceeEEEE
Confidence 47899999999999999876542 2233333 489999999999888775
No 8
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.58 E-value=5.2e-13 Score=113.13 Aligned_cols=221 Identities=17% Similarity=0.190 Sum_probs=141.5
Q ss_pred ceEEEcC-CCCEEEEe-cCCeEEEEE--CCeeeE----------EEe--cCC-eEEEEeCCCc--EEEEc-CCC-eEEEe
Q 018144 82 EDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVN----------WKF--IDS-HLIICDNANG--LHKVS-EDG-VENFL 140 (360)
Q Consensus 82 e~i~~d~-~G~l~v~~-~~G~I~~~~--~g~~~~----------~~~--~~g-~L~v~~~~~g--l~~~~-~~g-~~~l~ 140 (360)
|++.+|. .+.||..+ ..|.|.|+| ..++.. +.. .++ ..++...+.. +...+ ... ..++.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~ 97 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYR 97 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeee
Confidence 3334553 45555555 889999987 333221 111 121 2455554443 33333 122 23332
Q ss_pred e---ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecC
Q 018144 141 S---YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 217 (360)
Q Consensus 141 ~---~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~d 217 (360)
+ ..+....+..|+--+||+|+.|....+.. -+.+|- ..|.|++.-+ .++++.+...+..+||++++.|
T Consensus 98 t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~-------~~~le~-~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d 168 (310)
T KOG4499|consen 98 TLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADF-------GDDLEP-IGGELYSWLA-GHQVELIWNCVGISNGLAWDSD 168 (310)
T ss_pred eccccCchHHhcccccCccCCCCceeeeeeccc-------cccccc-cccEEEEecc-CCCceeeehhccCCcccccccc
Confidence 2 22233345678889999999988643310 011221 1345665554 4888888888999999999999
Q ss_pred CCEEEEEeCCCCEEEEEE--ecCCcCcceeeeccC------CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHH
Q 018144 218 EDYVVVCESWKFRCRKYW--LKGERKGKLETFAEN------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH 289 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~--~~g~~~~~~~~~~~~------~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~ 289 (360)
.+.+|+.++.+..|..|+ ..++...+.+++.+. .+-.|||+++|.+|+|||+++.
T Consensus 169 ~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----------------- 231 (310)
T KOG4499|consen 169 AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----------------- 231 (310)
T ss_pred CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------
Confidence 999999999999996655 444434333333221 2237999999999999999998
Q ss_pred HHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEEC---CEEEEEeC
Q 018144 290 VLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISL 349 (360)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~---g~Lylgs~ 349 (360)
.+.|+++|| .|+++..+.-|. ..+|++.+.+ +.||+...
T Consensus 232 -----------------g~~V~~~dp~tGK~L~eiklPt----~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 232 -----------------GGTVQKVDPTTGKILLEIKLPT----PQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred -----------------CcEEEEECCCCCcEEEEEEcCC----CceEEEEecCCCccEEEEEeh
Confidence 479999998 699998887764 4688888875 45777654
No 9
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.54 E-value=1.9e-12 Score=136.94 Aligned_cols=177 Identities=17% Similarity=0.285 Sum_probs=122.3
Q ss_pred CCCcceEEEcCCC-CEEEEe-cCCeEEEEE--CCeeeEE---------------------------E-e-cCCeEEEEeC
Q 018144 78 VNHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNW---------------------------K-F-IDSHLIICDN 124 (360)
Q Consensus 78 ~~~Pe~i~~d~~G-~l~v~~-~~G~I~~~~--~g~~~~~---------------------------~-~-~~g~L~v~~~ 124 (360)
+..|.+|++|++| .||+++ .++.|.+++ ++.++.+ . . .++.|||++.
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 5679999999865 589998 567788887 4443322 1 1 2578999987
Q ss_pred C-CcEEEEc-CCC-eEEEeec-----cC-----CccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEE
Q 018144 125 A-NGLHKVS-EDG-VENFLSY-----VN-----GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 125 ~-~gl~~~~-~~g-~~~l~~~-----~~-----~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
. +.+++++ .++ ...+... .. ...+..|++|+++++|. |||+|.. +++|.
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~~Ir 765 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SSSIR 765 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CCeEE
Confidence 6 4577777 566 5544311 01 12356799999999985 9999864 46788
Q ss_pred EEcCCCCeEEEEeC----------------------CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceee--
Q 018144 191 KYDPSSNITTLVAD----------------------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLET-- 246 (360)
Q Consensus 191 ~~d~~tg~~~~~~~----------------------~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~-- 246 (360)
++|++++....+.. .+..|.|++++++|+ +||+++.+++|.+|+.++......-.
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 88887665432210 144789999999997 99999999999999986543211100
Q ss_pred ---ecc-----CCCCCCceeEEcCCCCEEEEEec
Q 018144 247 ---FAE-----NLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 247 ---~~~-----~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+.+ ..-..|.++++|++|++||+...
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 000 01125999999999999999876
No 10
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.44 E-value=1.2e-11 Score=110.86 Aligned_cols=178 Identities=25% Similarity=0.314 Sum_probs=122.8
Q ss_pred cCCeEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccccEEEc-CCCcEEEEeCCCCCCCccceecccccCCccEEE
Q 018144 115 IDSHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 115 ~~g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d-~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
.+|+||+.|.. +.|++++ .++ .+.+.. ..|++++++ ++|.+|+++.. ++.
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------~~~~G~~~~~~~g~l~v~~~~-------------------~~~ 63 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------PGPNGMAFDRPDGRLYVADSG-------------------GIA 63 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEES-------SSEEEEEEECTTSEEEEEETT-------------------CEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEEEEec-------CCCceEEEEccCCEEEEEEcC-------------------ceE
Confidence 47899999976 5688999 455 443321 128899999 88999998643 456
Q ss_pred EEcCCCCeEEEEeC------CCcCcceEEEecCCCEEEEEeCCC--------CEEEEEEecCCcCcceeeeccCCCCCCc
Q 018144 191 KYDPSSNITTLVAD------GFYFANGVALSRDEDYVVVCESWK--------FRCRKYWLKGERKGKLETFAENLPGAPD 256 (360)
Q Consensus 191 ~~d~~tg~~~~~~~------~l~~pngia~~~dg~~l~v~~t~~--------~~i~~~~~~g~~~~~~~~~~~~~~g~pd 256 (360)
.+|+++++++.+.. .+..||.++++++|+ +|++++.. ++|++++.++ +.+...+.+ ..|+
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~----~~~~~~~~~-~~pN 137 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG----KVTVVADGL-GFPN 137 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----EEEEEEEEE-SSEE
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC----eEEEEecCc-cccc
Confidence 66988898876543 467899999999997 99998764 5699999763 233333332 3699
Q ss_pred eeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC--CCc-E--EEEEeCCCCCc
Q 018144 257 NINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DGT-I--IRNLVDPTGQL 330 (360)
Q Consensus 257 ~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g~-~--~~~~~~~~g~~ 330 (360)
+|+++++|+ ||++... .+.|++++. ++. + .+.+.+..+.
T Consensus 138 Gi~~s~dg~~lyv~ds~----------------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 182 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSF----------------------------------NGRIWRFDLDADGGELSNRRVFIDFPGG- 182 (246)
T ss_dssp EEEEETTSSEEEEEETT----------------------------------TTEEEEEEEETTTCCEEEEEEEEE-SSS-
T ss_pred ceEECCcchheeecccc----------------------------------cceeEEEeccccccceeeeeeEEEcCCC-
Confidence 999999995 8888765 357888875 343 2 1233322221
Q ss_pred ccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 331 MSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 331 ~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
...+-++..+ +|+||++...++.|.+++-
T Consensus 183 ~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 183 PGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp SCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred CcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 1346667776 5999999999999999864
No 11
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.27 E-value=4.3e-10 Score=106.69 Aligned_cols=155 Identities=22% Similarity=0.310 Sum_probs=105.4
Q ss_pred CCCCcceEEEcCCCCEEEEec------------CC-eEEEEE----CCee---eEEE----------e-cCCeEEEEeCC
Q 018144 77 SVNHPEDASMDKNGVIYTATR------------DG-WIKRLQ----DGTW---VNWK----------F-IDSHLIICDNA 125 (360)
Q Consensus 77 ~~~~Pe~i~~d~~G~l~v~~~------------~G-~I~~~~----~g~~---~~~~----------~-~~g~L~v~~~~ 125 (360)
.+..|+.|++|++|+||+++. .+ +|++++ +|+. +.+. . .+| |||++.
T Consensus 12 ~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~- 89 (367)
T TIGR02604 12 LLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATP- 89 (367)
T ss_pred ccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCC-
Confidence 478999999999999999962 23 899987 3432 3332 1 245 999874
Q ss_pred CcEEEEc-C--C----C-eEEEeeccCCc---cccccccEEEcCCCcEEEEeCCCCCC--CccceecccccCCccEEEEE
Q 018144 126 NGLHKVS-E--D----G-VENFLSYVNGS---KLRFANDVVEASDGSLYFTVSSSKYL--PHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 126 ~gl~~~~-~--~----g-~~~l~~~~~~~---~~~~~n~l~~d~dG~l~vtd~~~~~~--~~~~~~~~~~~~~~g~l~~~ 192 (360)
..|+++. . + + .+.+.+..... ....++++++++||.|||++.+.... ......+.......|++++|
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 4588773 2 2 2 34555544332 24568999999999999998752110 00000011112234789999
Q ss_pred cCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEE
Q 018144 193 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKY 234 (360)
Q Consensus 193 d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~ 234 (360)
+|++++++.+..++.+|+|++++++|+ +|+++.......++
T Consensus 170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i 210 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV 210 (367)
T ss_pred ecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence 999999999999999999999999997 78888765544444
No 12
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.27 E-value=9.8e-09 Score=96.00 Aligned_cols=239 Identities=13% Similarity=0.110 Sum_probs=139.2
Q ss_pred hhcccceEecCCCCCCcceEEEcCCCC-EEEEe-cCCeEEEEE---CCeeeEE------------E-ec-CCeEEEEeCC
Q 018144 65 TQLQDFIKVGEGSVNHPEDASMDKNGV-IYTAT-RDGWIKRLQ---DGTWVNW------------K-FI-DSHLIICDNA 125 (360)
Q Consensus 65 ~~l~~~~~~~~~~~~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~---~g~~~~~------------~-~~-~g~L~v~~~~ 125 (360)
..|.....+..+ .+|..++++++|. ||+++ .++.|..++ +|+.+.. . .+ +..||++...
T Consensus 23 g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 23 GALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred CceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC
Confidence 344444555432 5789999999875 78887 577786555 4543211 1 11 3358887764
Q ss_pred C-cEEEEc--CCC-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCC-CeE
Q 018144 126 N-GLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NIT 199 (360)
Q Consensus 126 ~-gl~~~~--~~g-~~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-g~~ 199 (360)
. .+..++ .+| .........+ ...|..++++++| .+|+++.. .+.|..||.++ +.+
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l 161 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHL 161 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcc
Confidence 3 455555 345 3221111122 1357888999998 57787643 45677776643 333
Q ss_pred EE------EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC--cCcceeeec---cC--CCCCCceeEEcCCCC-
Q 018144 200 TL------VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFA---EN--LPGAPDNINLAPDGT- 265 (360)
Q Consensus 200 ~~------~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~--~~~~~~~~~---~~--~~g~pd~i~~d~~G~- 265 (360)
.. .......|+++++++||+++|+++...+.|..|+++.. +......+. .. .+..+..+.++++|+
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 21 11223568999999999999999988899999998632 211111111 00 112344688999996
Q ss_pred EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeC-CCCCcccceeeEEE--ECC
Q 018144 266 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMSFVTSGLQ--VDN 342 (360)
Q Consensus 266 lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-~~g~~~~~~t~~~~--~~g 342 (360)
+|++..... .-.++.++.++........ +.|. .+..+.. ++.
T Consensus 242 lyv~~~~~~--------------------------------~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~ 286 (330)
T PRK11028 242 LYACDRTAS--------------------------------LISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGK 286 (330)
T ss_pred EEEecCCCC--------------------------------eEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCC
Confidence 888754311 1245666666643332221 1121 2233333 357
Q ss_pred EEEEEeCCCCeEEEEeC
Q 018144 343 HLYVISLTSNFIGKVQL 359 (360)
Q Consensus 343 ~Lylgs~~~~~i~~~~l 359 (360)
+||+++-.++.|.++.+
T Consensus 287 ~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 287 YLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEEEEEccCCcEEEEEE
Confidence 89999988899998875
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.24 E-value=8.7e-09 Score=97.00 Aligned_cols=241 Identities=19% Similarity=0.255 Sum_probs=144.8
Q ss_pred hhcccceEecCCCCCCcceEEEcCC-CCEEEEec----CCeEEEEE---C-CeeeEEE-------------e--cCCeEE
Q 018144 65 TQLQDFIKVGEGSVNHPEDASMDKN-GVIYTATR----DGWIKRLQ---D-GTWVNWK-------------F--IDSHLI 120 (360)
Q Consensus 65 ~~l~~~~~~~~~~~~~Pe~i~~d~~-G~l~v~~~----~G~I~~~~---~-g~~~~~~-------------~--~~g~L~ 120 (360)
..|.....+.. ...|..++++++ ..||+.+. .|.|..+. + |+.+.+. . .+..||
T Consensus 25 g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~ 102 (345)
T PF10282_consen 25 GTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLY 102 (345)
T ss_dssp TEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEE
T ss_pred CCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEE
Confidence 44544444433 479999999875 46888875 46776555 4 6544321 1 245599
Q ss_pred EEeCCCcEE-EEc--CCC-eEEEeecc-------C--CccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCc
Q 018144 121 ICDNANGLH-KVS--EDG-VENFLSYV-------N--GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPH 186 (360)
Q Consensus 121 v~~~~~gl~-~~~--~~g-~~~l~~~~-------~--~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~ 186 (360)
++.+..|-+ .++ .+| +....... . ......|..+.+++||+ +|++|-+ .
T Consensus 103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~ 165 (345)
T PF10282_consen 103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------A 165 (345)
T ss_dssp EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------T
T ss_pred EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------C
Confidence 998776533 333 557 43321110 0 11234678899999985 9998754 3
Q ss_pred cEEEEEcC--CCCeEEE----EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC--CcCcceeeecc---CCCC--
Q 018144 187 GQLLKYDP--SSNITTL----VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAE---NLPG-- 253 (360)
Q Consensus 187 g~l~~~d~--~tg~~~~----~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g--~~~~~~~~~~~---~~~g-- 253 (360)
.+|+.|+. .+++++. .......|..+++++|++++|++....+.|..|+.+. ......+.... ...+
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 45555554 4333533 2244568999999999999999999999999998872 22222222211 1111
Q ss_pred CCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeCC-CCCc
Q 018144 254 APDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDP-TGQL 330 (360)
Q Consensus 254 ~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~-~g~~ 330 (360)
.|.+|++++||+ +||+..... .=.++.+|++ |++...-..+ .|.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~--------------------------------sI~vf~~d~~~g~l~~~~~~~~~G~- 292 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSN--------------------------------SISVFDLDPATGTLTLVQTVPTGGK- 292 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTT--------------------------------EEEEEEECTTTTTEEEEEEEEESSS-
T ss_pred CceeEEEecCCCEEEEEeccCC--------------------------------EEEEEEEecCCCceEEEEEEeCCCC-
Confidence 477899999996 888876511 1245666554 5543322222 232
Q ss_pred ccceeeEEE--ECCEEEEEeCCCCeEEEEeC
Q 018144 331 MSFVTSGLQ--VDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 331 ~~~~t~~~~--~~g~Lylgs~~~~~i~~~~l 359 (360)
.+..+.. ++..||+++..++.|.++++
T Consensus 293 --~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 293 --FPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp --SEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred --CccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 4566666 45889999999999999875
No 14
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.13 E-value=2.1e-08 Score=91.48 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=99.6
Q ss_pred ccccccEEEcCC------CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCc--------------
Q 018144 148 LRFANDVVEASD------GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-------------- 207 (360)
Q Consensus 148 ~~~~n~l~~d~d------G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~-------------- 207 (360)
..+.+++++|.. +.+||||++ .++|+.||..+++...+.....
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~ 122 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGE 122 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTE
T ss_pred ccccceEEEEccCCCCcceEEEEeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCc
Confidence 357889999862 579999986 3478899988887766543211
Q ss_pred ------CcceEEEec---CCCEEEEEeCCCCEEEEEEec---CCcC-------cceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 208 ------FANGVALSR---DEDYVVVCESWKFRCRKYWLK---GERK-------GKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 208 ------~pngia~~~---dg~~l~v~~t~~~~i~~~~~~---g~~~-------~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
...|+++++ |++.||+.-..+.+++++..+ .+.. ...+.+.+ ..+..++++.|++|+||+
T Consensus 123 ~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~~D~~G~ly~ 201 (287)
T PF03022_consen 123 SFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMAIDPNGNLYF 201 (287)
T ss_dssp EEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEETTTEEEE
T ss_pred eEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccc-cCCCCceEEECCCCcEEE
Confidence 135788866 888999999888899998753 1111 12233332 223568999999999999
Q ss_pred EEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC-----cEEEEEeCCCCCcccceeeEEEEC--
Q 018144 269 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG-----TIIRNLVDPTGQLMSFVTSGLQVD-- 341 (360)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-----~~~~~~~~~~g~~~~~~t~~~~~~-- 341 (360)
+... .+.|.+.++++ +....++++.. +.++.++..++
T Consensus 202 ~~~~----------------------------------~~aI~~w~~~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~ 245 (287)
T PF03022_consen 202 TDVE----------------------------------QNAIGCWDPDGPYTPENFEILAQDPRT--LQWPDGLKIDPEG 245 (287)
T ss_dssp EECC----------------------------------CTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--
T ss_pred ecCC----------------------------------CCeEEEEeCCCCcCccchheeEEcCce--eeccceeeecccc
Confidence 9987 46999999988 44445566653 46778887766
Q ss_pred -CEEEEEeCC
Q 018144 342 -NHLYVISLT 350 (360)
Q Consensus 342 -g~Lylgs~~ 350 (360)
|+||+.+..
T Consensus 246 ~g~L~v~snr 255 (287)
T PF03022_consen 246 DGYLWVLSNR 255 (287)
T ss_dssp TS-EEEEE-S
T ss_pred CceEEEEECc
Confidence 999998743
No 15
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.09 E-value=3.1e-09 Score=100.84 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=82.0
Q ss_pred cceEEEcCCCCEEEEecCCeEEEEE--CCeeeEEE-------------ecCCeEEEEeCCCcEEEEcCCC--eEEEeecc
Q 018144 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWK-------------FIDSHLIICDNANGLHKVSEDG--VENFLSYV 143 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~~-------------~~~g~L~v~~~~~gl~~~~~~g--~~~l~~~~ 143 (360)
-..+..|.+|.+|+|+.+| +++|+ .|+..... +..|+|||++ ++|++..++.| +.-..
T Consensus 167 V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGT-dqGv~~~e~~G~~~sn~~--- 241 (671)
T COG3292 167 VVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGT-DQGVYLQEAEGWRASNWG--- 241 (671)
T ss_pred ceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEe-ccceEEEchhhccccccC---
Confidence 3457889999999999887 88888 55433221 2368999987 67899888545 22221
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE----eCCCcCcceEEEecCCC
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFYFANGVALSRDED 219 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~----~~~l~~pngia~~~dg~ 219 (360)
...+...+.-+..|.+|++||. +.+ ++.++......+... ..+....|++..+.||+
T Consensus 242 ~~lp~~~I~ll~qD~qG~lWiG------------------Ten-Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs 302 (671)
T COG3292 242 PMLPSGNILLLVQDAQGELWIG------------------TEN-GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS 302 (671)
T ss_pred CCCcchheeeeecccCCCEEEe------------------ecc-cceeEecCCCCccccccccCCccccccceeeccCCC
Confidence 1122234566778999999994 333 355555443333221 12334558888999997
Q ss_pred EEEEEeCCCCEEEEEEe
Q 018144 220 YVVVCESWKFRCRKYWL 236 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~ 236 (360)
||+.... ++++|..
T Consensus 303 -LWv~t~~--giv~~~~ 316 (671)
T COG3292 303 -LWVGTYG--GIVRYLT 316 (671)
T ss_pred -EeeeccC--ceEEEec
Confidence 8777653 4666653
No 16
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.05 E-value=5e-07 Score=85.08 Aligned_cols=192 Identities=19% Similarity=0.240 Sum_probs=117.0
Q ss_pred cCCeEEEEeCC----CcEEEEc--CC-C-eEEEeecc-CCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccC
Q 018144 115 IDSHLIICDNA----NGLHKVS--ED-G-VENFLSYV-NGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGK 184 (360)
Q Consensus 115 ~~g~L~v~~~~----~gl~~~~--~~-g-~~~l~~~~-~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~ 184 (360)
.+..||+++.. .++..+. ++ | ++.+.... .+ ..|-.++++++|+ ||+++-.
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g---~~p~~i~~~~~g~~l~vany~---------------- 107 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG---SSPCHIAVDPDGRFLYVANYG---------------- 107 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS---SCEEEEEECTTSSEEEEEETT----------------
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC---CCcEEEEEecCCCEEEEEEcc----------------
Confidence 35679998863 3565555 44 7 66654322 23 3577899999995 8887532
Q ss_pred CccEE--EEEcCCCCeEEEEe--------------CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc--Ccceee
Q 018144 185 PHGQL--LKYDPSSNITTLVA--------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KGKLET 246 (360)
Q Consensus 185 ~~g~l--~~~d~~tg~~~~~~--------------~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~--~~~~~~ 246 (360)
.|.+ +.++.+ |++.... .....|+.+.++|||+++|+++.+..+|+.|+.+... +.....
T Consensus 108 -~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 108 -GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp -TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred -CCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence 3444 444433 5543321 1245788999999999999999999999999997543 222222
Q ss_pred eccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcE--EEE
Q 018144 247 FAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTI--IRN 322 (360)
Q Consensus 247 ~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~--~~~ 322 (360)
+.-.....|..++++++|+ +||..... ..-.++.++ .+|+. +..
T Consensus 186 ~~~~~G~GPRh~~f~pdg~~~Yv~~e~s--------------------------------~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 186 IKVPPGSGPRHLAFSPDGKYAYVVNELS--------------------------------NTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp EECSTTSSEEEEEE-TTSSEEEEEETTT--------------------------------TEEEEEEEETTTTEEEEEEE
T ss_pred cccccCCCCcEEEEcCCcCEEEEecCCC--------------------------------CcEEEEeecccCCceeEEEE
Confidence 2112223589999999985 78876541 112445556 34532 222
Q ss_pred EeC-CCCCc-ccceeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 323 LVD-PTGQL-MSFVTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 323 ~~~-~~g~~-~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
+.. +.+.. ....+.+... +..||+++-..+.|+++++
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 322 12211 1256666666 4789999999999999987
No 17
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.02 E-value=3.5e-07 Score=85.52 Aligned_cols=137 Identities=11% Similarity=0.059 Sum_probs=84.9
Q ss_pred CCeEEEEeCC-CcEEEEc--CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEE
Q 018144 116 DSHLIICDNA-NGLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 116 ~g~L~v~~~~-~gl~~~~--~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
+..||++... .++..++ .+| ++.......+ ..|..++++++|+ +|+++.. .+.|.
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~~-----------------~~~v~ 105 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP---GSPTHISTDHQGRFLFSASYN-----------------ANCVS 105 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCceEEeeeecCC---CCceEEEECCCCCEEEEEEcC-----------------CCeEE
Confidence 3458888754 5676565 456 5443221111 2478999999996 7776421 35666
Q ss_pred EEcCCC-CeE---EEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcc--eeeeccCCCCCCceeEEcCC
Q 018144 191 KYDPSS-NIT---TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGK--LETFAENLPGAPDNINLAPD 263 (360)
Q Consensus 191 ~~d~~t-g~~---~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~--~~~~~~~~~g~pd~i~~d~~ 263 (360)
.|+.++ +.. .....+...|++++++||++++|+++...+.|..|+++.. .... ...........|..++++++
T Consensus 106 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pd 185 (330)
T PRK11028 106 VSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPN 185 (330)
T ss_pred EEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCC
Confidence 665532 322 1112345678999999999999999999899999998642 1110 00111012235889999999
Q ss_pred CC-EEEEEec
Q 018144 264 GT-FWIAIIK 272 (360)
Q Consensus 264 G~-lwva~~~ 272 (360)
|+ +|+++..
T Consensus 186 g~~lyv~~~~ 195 (330)
T PRK11028 186 QQYAYCVNEL 195 (330)
T ss_pred CCEEEEEecC
Confidence 96 7787653
No 18
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=1.1e-06 Score=79.42 Aligned_cols=232 Identities=16% Similarity=0.211 Sum_probs=143.6
Q ss_pred CCCcceEEEcCCC-CEEEEec---CCeE--EEEE--CCeeeEEE--------------ecCC-eEEEEeCCCcEEEEc--
Q 018144 78 VNHPEDASMDKNG-VIYTATR---DGWI--KRLQ--DGTWVNWK--------------FIDS-HLIICDNANGLHKVS-- 132 (360)
Q Consensus 78 ~~~Pe~i~~d~~G-~l~v~~~---~G~I--~~~~--~g~~~~~~--------------~~~g-~L~v~~~~~gl~~~~-- 132 (360)
+..|.-+++++++ .||++.. .|+| |++| +|+.+.+. +.+| -++++.+..|.+.+.
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~ 118 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL 118 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence 6789999999876 8999873 4666 4555 36654322 1234 477787776666554
Q ss_pred -CCC-eEEEee----ccCC--cc--ccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 133 -EDG-VENFLS----YVNG--SK--LRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 133 -~~g-~~~l~~----~~~~--~~--~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
.+| +..... ...+ .+ ...+....++++| .|+++|-+ ..+++.|+.+.|+++.
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLTP 181 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCcccc
Confidence 456 433221 1111 11 1235667789999 57776643 3577777777777755
Q ss_pred Ee----CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeec--cCCCC-C-----CceeEEcCCCC-EEE
Q 018144 202 VA----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA--ENLPG-A-----PDNINLAPDGT-FWI 268 (360)
Q Consensus 202 ~~----~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~--~~~~g-~-----pd~i~~d~~G~-lwv 268 (360)
.. .....|.-|+|.|++++.|+..--++.|..+..++. .+.++.+- ..+|. + -..|.++++|+ ||+
T Consensus 182 ~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYa 260 (346)
T COG2706 182 ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYA 260 (346)
T ss_pred ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEE
Confidence 32 345678999999999999999888899988887753 23333221 01111 1 22377899997 555
Q ss_pred EEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE--eCCCCCcccceeeEEEECCEEEE
Q 018144 269 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL--VDPTGQLMSFVTSGLQVDNHLYV 346 (360)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~--~~~~g~~~~~~t~~~~~~g~Lyl 346 (360)
+.-+- +.=.+++++++|..++.+ ....|. .+.--.+...++.|++
T Consensus 261 sNRg~--------------------------------dsI~~f~V~~~~g~L~~~~~~~teg~-~PR~F~i~~~g~~Lia 307 (346)
T COG2706 261 SNRGH--------------------------------DSIAVFSVDPDGGKLELVGITPTEGQ-FPRDFNINPSGRFLIA 307 (346)
T ss_pred ecCCC--------------------------------CeEEEEEEcCCCCEEEEEEEeccCCc-CCccceeCCCCCEEEE
Confidence 44331 123678899987655544 223332 2222223344678999
Q ss_pred EeCCCCeEEEEeCC
Q 018144 347 ISLTSNFIGKVQLS 360 (360)
Q Consensus 347 gs~~~~~i~~~~l~ 360 (360)
++-.++.|.++..+
T Consensus 308 a~q~sd~i~vf~~d 321 (346)
T COG2706 308 ANQKSDNITVFERD 321 (346)
T ss_pred EccCCCcEEEEEEc
Confidence 99999999988754
No 19
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.99 E-value=4e-08 Score=93.23 Aligned_cols=178 Identities=15% Similarity=0.171 Sum_probs=109.4
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCc-cEEEEEcCCC--C---eEEEEeCCCcCcceEEEecCCCEE
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH-GQLLKYDPSS--N---ITTLVADGFYFANGVALSRDEDYV 221 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~t--g---~~~~~~~~l~~pngia~~~dg~~l 221 (360)
+..|.+|++|++|+|||++... |.. ........ ++|++++..+ | +.+.+.+++..|+|+++.++| |
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~-y~~-----~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGIT-YSR-----PAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--V 84 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCc-CCC-----CCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--E
Confidence 4679999999999999998641 111 00011122 3888887532 3 346677889999999999887 9
Q ss_pred EEEeCCCCEEEEEE-ecCC-cC-cceeeeccCCC-------CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHH
Q 018144 222 VVCESWKFRCRKYW-LKGE-RK-GKLETFAENLP-------GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL 291 (360)
Q Consensus 222 ~v~~t~~~~i~~~~-~~g~-~~-~~~~~~~~~~~-------g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~ 291 (360)
||++. .+|++|. .++. +. +..+++.+..+ ..+.++++++||+||++.....+... ..|.
T Consensus 85 yV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~----~~~~----- 153 (367)
T TIGR02604 85 YVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV----TRPG----- 153 (367)
T ss_pred EEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee----ccCC-----
Confidence 99875 4698884 4332 12 24444433321 23778999999999998764211000 0000
Q ss_pred HhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeE
Q 018144 292 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFI 354 (360)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i 354 (360)
.+. .......+.+++++++|..++.+.. | +..+.++..+ +|+||++.......
T Consensus 154 --~~~----~~~~~~~g~i~r~~pdg~~~e~~a~--G--~rnp~Gl~~d~~G~l~~tdn~~~~~ 207 (367)
T TIGR02604 154 --TSD----ESRQGLGGGLFRYNPDGGKLRVVAH--G--FQNPYGHSVDSWGDVFFCDNDDPPL 207 (367)
T ss_pred --Ccc----CcccccCceEEEEecCCCeEEEEec--C--cCCCccceECCCCCEEEEccCCCce
Confidence 000 0001224789999999988887764 3 2345556665 58999887654433
No 20
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=8.3e-07 Score=80.26 Aligned_cols=189 Identities=19% Similarity=0.258 Sum_probs=118.5
Q ss_pred hhcccceEecCCCCCCcceEEEcCCC-CEEEEe-cCCeEEEEE---CCeeeEE----E--------------------ec
Q 018144 65 TQLQDFIKVGEGSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWVNW----K--------------------FI 115 (360)
Q Consensus 65 ~~l~~~~~~~~~~~~~Pe~i~~d~~G-~l~v~~-~~G~I~~~~---~g~~~~~----~--------------------~~ 115 (360)
++|+........ ...|..+++|++| .++++. ..|.|.++. +|..... . .+
T Consensus 76 G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 76 GRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred CeEEEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence 455444443322 3677999999998 567777 566665544 5532211 0 12
Q ss_pred CC-eEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEE
Q 018144 116 DS-HLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 116 ~g-~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
++ .|+++|-+ ..++.|+ .+| ++.... ..-.+-..|..|++.++|. .|+.. |....=-++
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~-~~v~~G~GPRHi~FHpn~k~aY~v~---------------EL~stV~v~ 218 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADP-AEVKPGAGPRHIVFHPNGKYAYLVN---------------ELNSTVDVL 218 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccc-cccCCCCCcceEEEcCCCcEEEEEe---------------ccCCEEEEE
Confidence 33 58888866 4677777 677 544321 1112335799999999995 67643 112222467
Q ss_pred EEcCCCCeEEEEeC------CC---cCcceEEEecCCCEEEEEeCCCCEEEEEEec--CCcCcceeeeccCCCC-CCcee
Q 018144 191 KYDPSSNITTLVAD------GF---YFANGVALSRDEDYVVVCESWKFRCRKYWLK--GERKGKLETFAENLPG-APDNI 258 (360)
Q Consensus 191 ~~d~~tg~~~~~~~------~l---~~pngia~~~dg~~l~v~~t~~~~i~~~~~~--g~~~~~~~~~~~~~~g-~pd~i 258 (360)
.||+..|+++.+.. ++ .....|.+++||++||+++.+.+.|..|.++ +.++...+.. ...| .|..+
T Consensus 219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~--~teg~~PR~F 296 (346)
T COG2706 219 EYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT--PTEGQFPRDF 296 (346)
T ss_pred EEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe--ccCCcCCccc
Confidence 78887788776532 22 2344688999999999999998888877765 3333222222 1233 49999
Q ss_pred EEcCCCCEEEEEec
Q 018144 259 NLAPDGTFWIAIIK 272 (360)
Q Consensus 259 ~~d~~G~lwva~~~ 272 (360)
.+++.|++.++...
T Consensus 297 ~i~~~g~~Liaa~q 310 (346)
T COG2706 297 NINPSGRFLIAANQ 310 (346)
T ss_pred eeCCCCCEEEEEcc
Confidence 99999998877665
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.94 E-value=3.3e-06 Score=76.91 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=129.0
Q ss_pred CCcceEEEcCCCC-EEEEe-cCCeEEEEE--CCeeeE-E---------E-ec-CCeEEEEeCC-CcEEEEc-CCC--eEE
Q 018144 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVN-W---------K-FI-DSHLIICDNA-NGLHKVS-EDG--VEN 138 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~--~g~~~~-~---------~-~~-~g~L~v~~~~-~gl~~~~-~~g--~~~ 138 (360)
.+|.+++++++|. +|++. .++.|..++ +++... + . .+ ++.+|++... +.+..++ .++ +..
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 4578899998886 56655 678888888 443321 1 1 12 2346666543 3455566 443 222
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCC
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 218 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg 218 (360)
+.. + ..+.+++++++|.++++... ....+..+|..+++..........|+.+++++|+
T Consensus 111 ~~~---~---~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 168 (300)
T TIGR03866 111 IPV---G---VEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG 168 (300)
T ss_pred eeC---C---CCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC
Confidence 211 1 23678999999987765321 1124556787766654322223467889999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcC-cceeeeccC---CCCCCceeEEcCCCCE-EEEEecCchhHHHHhhcchhHHHHHHh
Q 018144 219 DYVVVCESWKFRCRKYWLKGERK-GKLETFAEN---LPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLAA 293 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~~---~~g~pd~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~r~~~~~ 293 (360)
+.++++....+.|..|+.+..+. .....-... ....|.+++++++|+. |++...
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--------------------- 227 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--------------------- 227 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC---------------------
Confidence 98888766667899999864321 111100000 1113667889999974 676543
Q ss_pred CCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 018144 294 YPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~l~ 360 (360)
.+.+..+|. ++++...+.. +. .+.++... +..||+++-..+.|.+++++
T Consensus 228 -------------~~~i~v~d~~~~~~~~~~~~--~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 228 -------------ANRVAVVDAKTYEVLDYLLV--GQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred -------------CCeEEEEECCCCcEEEEEEe--CC---CcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 135666775 4565544432 11 23444443 46788777667788887753
No 22
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.94 E-value=1.1e-06 Score=82.56 Aligned_cols=249 Identities=16% Similarity=0.183 Sum_probs=136.3
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEEecC-CeEEEEECCe-e----e----E--------------------------EEe
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTATRD-GWIKRLQDGT-W----V----N--------------------------WKF 114 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~~~~-G~I~~~~~g~-~----~----~--------------------------~~~ 114 (360)
+.+..+ +..|..++..++|.+.+.... |.+..+.+|. . + . +..
T Consensus 60 ~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~ 138 (399)
T COG2133 60 EVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISE 138 (399)
T ss_pred cccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEe
Confidence 344455 899999999999955555544 7665554221 0 0 0 111
Q ss_pred cCCeEEEEeCCCcEEEEc-CCC----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceec-----ccccC
Q 018144 115 IDSHLIICDNANGLHKVS-EDG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD-----ILEGK 184 (360)
Q Consensus 115 ~~g~L~v~~~~~gl~~~~-~~g----~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~-----~~~~~ 184 (360)
.++.+|+++. ..+.+++ .+. .+.+....++....+-..|++++||+||++-.+........... +++-.
T Consensus 139 ~~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~ 217 (399)
T COG2133 139 PGGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRID 217 (399)
T ss_pred ecCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeec
Confidence 2333454442 2344555 211 23333444443356777899999999999976641111000000 01111
Q ss_pred CccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEE------EEEEecCCcCcceeee-c---------
Q 018144 185 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC------RKYWLKGERKGKLETF-A--------- 248 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i------~~~~~~g~~~~~~~~~-~--------- 248 (360)
...++..|+.+...+++..++.+|.|++++|....||+++.+...+ .++. .|...+..-.+ .
T Consensus 218 -~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~-~G~nYGWP~~~~G~~~~g~~~~ 295 (399)
T COG2133 218 -RAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIR-PGKNYGWPYAYFGQNYDGRAIP 295 (399)
T ss_pred -cCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccc-cCCccCCceeccCcccCccccC
Confidence 1234455555555566778899999999999855699999876333 2211 11111100000 0
Q ss_pred c--C-----CC-------CCCceeEEcC-C------CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 018144 249 E--N-----LP-------GAPDNINLAP-D------GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 307 (360)
Q Consensus 249 ~--~-----~~-------g~pd~i~~d~-~------G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 307 (360)
+ . .| -.|.||++-. + |.++|+... .
T Consensus 296 ~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hg----------------------------------s 341 (399)
T COG2133 296 DGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHG----------------------------------S 341 (399)
T ss_pred CCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeec----------------------------------c
Confidence 0 0 00 1256666642 2 567777766 2
Q ss_pred eEEEEECCCCc---EEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCC-eEEEEeC
Q 018144 308 AHLIHVAEDGT---IIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSN-FIGKVQL 359 (360)
Q Consensus 308 ~~v~~~~~~g~---~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~-~i~~~~l 359 (360)
-.+.+.+++|+ ..+.+-..+.. ..+-.+... ||.||+.+..++ .|.|+..
T Consensus 342 w~~~~~~~~g~~~~~~~~fl~~d~~--gR~~dV~v~~DGallv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 342 WPVLRLRPDGNYKVVLTGFLSGDLG--GRPRDVAVAPDGALLVLTDQGDGRILRVSY 396 (399)
T ss_pred eeEEEeccCCCcceEEEEEEecCCC--CcccceEECCCCeEEEeecCCCCeEEEecC
Confidence 35778888877 33333221211 346666665 799999999855 9999865
No 23
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.93 E-value=1.3e-07 Score=86.69 Aligned_cols=168 Identities=23% Similarity=0.314 Sum_probs=108.3
Q ss_pred ceEecCCCCCCcceEEEcCCC-CEEEEecCCeEEEEE--CCeeeEEEecCCeEEEEeCCCcEEEEcCCCeEEEeeccCCc
Q 018144 70 FIKVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSHLIICDNANGLHKVSEDGVENFLSYVNGS 146 (360)
Q Consensus 70 ~~~~~~~~~~~Pe~i~~d~~G-~l~v~~~~G~I~~~~--~g~~~~~~~~~g~L~v~~~~~gl~~~~~~g~~~l~~~~~~~ 146 (360)
...++...+.+||.+.+|+.| --|++-.+|+|.++. ...+..+.... .+....+. ...+ .+. ...
T Consensus 45 ~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~----~s~~~~~~---~~~~--~~~---~e~ 112 (376)
T KOG1520|consen 45 GKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTK----DSTNRSQC---CDPG--SFE---TEP 112 (376)
T ss_pred cccccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEecc----cccccccc---CCCc--cee---ccc
Confidence 355666668999999999744 578888899988886 22233332211 00000000 0000 000 111
Q ss_pred cccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-----CCcCcceEEEecCCCE
Q 018144 147 KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFANGVALSRDEDY 220 (360)
Q Consensus 147 ~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-----~l~~pngia~~~dg~~ 220 (360)
.-..|-+|+++..| ++||+|+. -+|+.++++++..+.+.+ .+.+.|++.++++| .
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~ 173 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-V 173 (376)
T ss_pred ccCCcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-e
Confidence 12468899999888 99999975 369999999777655443 25688999999966 5
Q ss_pred EEEEeCCC-----------------CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 221 VVVCESWK-----------------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 221 l~v~~t~~-----------------~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+|++|++. +|+++||+.. ...+++.+++. +|+|+++.+|+.+.+-+..
T Consensus 174 vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t---K~~~VLld~L~-F~NGlaLS~d~sfvl~~Et 238 (376)
T KOG1520|consen 174 VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST---KVTKVLLDGLY-FPNGLALSPDGSFVLVAET 238 (376)
T ss_pred EEEeccccccchhheEEeeecCCCccceEEecCcc---cchhhhhhccc-ccccccCCCCCCEEEEEee
Confidence 99998763 4777787633 34456665554 6999999999986665443
No 24
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.91 E-value=3.6e-07 Score=85.38 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=94.8
Q ss_pred CCCcceEEEcCCCCEEEEecCCeEEEEE-CCee-eEE-----------------Eec-----CCeEEEEeCC--------
Q 018144 78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTW-VNW-----------------KFI-----DSHLIICDNA-------- 125 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~~-~~~-----------------~~~-----~g~L~v~~~~-------- 125 (360)
|..|.+|++.++|.+|++...|+|++++ +|.. ..+ +.. ++.||++...
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4689999999999999999999999999 7754 211 111 3678887652
Q ss_pred -CcEEEEc--CC-C----eEEEeeccCC--ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 126 -NGLHKVS--ED-G----VENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 126 -~gl~~~~--~~-g----~~~l~~~~~~--~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
..|.++. .. . .+.+...... ........|++++||.||++-..... .....+ .....|.|+|++++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~--~~~~~G~ilri~~d 156 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQD--PNSLRGKILRIDPD 156 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCS--TTSSTTEEEEEETT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccc--cccccceEEEeccc
Confidence 2466665 22 1 2233222221 22345567999999999999765322 111111 12235889999986
Q ss_pred CC-------------eEEEEeCCCcCcceEEEecCCCEEEEEeCCC---CEEEEEE
Q 018144 196 SN-------------ITTLVADGFYFANGVALSRDEDYVVVCESWK---FRCRKYW 235 (360)
Q Consensus 196 tg-------------~~~~~~~~l~~pngia~~~dg~~l~v~~t~~---~~i~~~~ 235 (360)
.. ..+.+..++..|.++++++....||+++.+. ..|.++.
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE 212 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-
T ss_pred CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec
Confidence 32 2355677899999999999933599998764 3566554
No 25
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=2.9e-06 Score=80.94 Aligned_cols=175 Identities=16% Similarity=0.156 Sum_probs=116.1
Q ss_pred CCcceEEEcCCC-CEEEEec-CCeEEEEE--CCeeeEE-------------EecCCeEEEEeCC-CcEEEEc-CCCeEEE
Q 018144 79 NHPEDASMDKNG-VIYTATR-DGWIKRLQ--DGTWVNW-------------KFIDSHLIICDNA-NGLHKVS-EDGVENF 139 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~l~v~~~-~G~I~~~~--~g~~~~~-------------~~~~g~L~v~~~~-~gl~~~~-~~g~~~l 139 (360)
..|..++++++| .+|+... ...+..++ ...++.+ ...+.++|+.+.. +.+..++ ... +.+
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~ 109 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVL 109 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccc-cee
Confidence 489999999887 8888873 33455554 2222211 1123458887755 4566666 322 111
Q ss_pred eeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg 218 (360)
....-+ ..|.+++++++| .+|++|... .++.+..+|..++++.........|.+++++++|
T Consensus 110 ~~~~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g 171 (381)
T COG3391 110 GSIPVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDG 171 (381)
T ss_pred eEeeec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCC
Confidence 111112 268999999998 899998741 2468999999888776654334468999999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcc-eeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~-~~~~~~~~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
+.+|+++...++|..++.++..... ...........|.++.++++|+ +|++...
T Consensus 172 ~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 172 NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 9999999889999999976543321 0000011233699999999997 9998876
No 26
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.86 E-value=5.1e-07 Score=92.64 Aligned_cols=226 Identities=17% Similarity=0.203 Sum_probs=142.4
Q ss_pred CCCCcceEEEcCCCCEEEEecCCeEEEEE-CCeeeEEE----------------ecCCeEEEEeCC-CcEEEEc---C--
Q 018144 77 SVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWK----------------FIDSHLIICDNA-NGLHKVS---E-- 133 (360)
Q Consensus 77 ~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~~~~~~----------------~~~g~L~v~~~~-~gl~~~~---~-- 133 (360)
.+..|-.++..+||.||+|+.+ -|-|+. +|++..+. ..+|.|||++.. +.++++. +
T Consensus 363 ~L~aPvala~a~DGSl~VGDfN-yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d 441 (1899)
T KOG4659|consen 363 SLFAPVALAYAPDGSLIVGDFN-YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQD 441 (1899)
T ss_pred eeeceeeEEEcCCCcEEEccch-heeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccc
Confidence 3678999999999999999965 377777 77654331 237999999976 5788876 1
Q ss_pred -CC-eEEEeec----------------cCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 134 -DG-VENFLSY----------------VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 134 -~g-~~~l~~~----------------~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
.+ .++++-. .....+.+|.+|++|.+|.+||+|+. +|-++|.+
T Consensus 442 ~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~~ 502 (1899)
T KOG4659|consen 442 SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------------------RIRVIDTT 502 (1899)
T ss_pred cccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------------------EEEEeccC
Confidence 12 5555411 01234679999999999999999864 34444432
Q ss_pred CCeEEEEe--------------------CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc---Ccce--------
Q 018144 196 SNITTLVA--------------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER---KGKL-------- 244 (360)
Q Consensus 196 tg~~~~~~--------------------~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~---~~~~-------- 244 (360)
|.+..+. -.+..|..++++|=.+.|||.++. -|++++.+..- .+..
T Consensus 503 -giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n--vvlrit~~~rV~Ii~GrP~hC~~a~~ 579 (1899)
T KOG4659|consen 503 -GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN--VVLRITVVHRVRIILGRPTHCDLANA 579 (1899)
T ss_pred -ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc--eEEEEccCccEEEEcCCccccccCCC
Confidence 3332221 124578899999955569999974 57777754320 0100
Q ss_pred eeeccC-----CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE
Q 018144 245 ETFAEN-----LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI 319 (360)
Q Consensus 245 ~~~~~~-----~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~ 319 (360)
..+... ..-.+..|++..+|-|||+....|. -+.|-++..||++
T Consensus 580 t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rr-------------------------------iNrvr~~~tdg~i 628 (1899)
T KOG4659|consen 580 TSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRR-------------------------------INRVRKLSTDGTI 628 (1899)
T ss_pred chhhhhhhhhhhhhhhhceeecCCceEEEEeccchh-------------------------------hhheEEeccCceE
Confidence 000000 0014678999999999999877421 1345555556633
Q ss_pred EEEEe------------------CCC----CCcccceeeEEEE-CCEEEEEeCCCCeEEEE
Q 018144 320 IRNLV------------------DPT----GQLMSFVTSGLQV-DNHLYVISLTSNFIGKV 357 (360)
Q Consensus 320 ~~~~~------------------~~~----g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~ 357 (360)
. .+. ..+ ...++.+++++.. +|++|++...+-+|..+
T Consensus 629 ~-ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~V 688 (1899)
T KOG4659|consen 629 S-ILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKV 688 (1899)
T ss_pred E-EecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhh
Confidence 2 121 000 0124556666666 69999999988877543
No 27
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=1.1e-07 Score=87.16 Aligned_cols=158 Identities=20% Similarity=0.258 Sum_probs=106.4
Q ss_pred cEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEE
Q 018144 153 DVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC 231 (360)
Q Consensus 153 ~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i 231 (360)
+-..+++. .||++|-. .++|+++|+.+|+.+.+.....++++..++.++. |++++.+ +
T Consensus 29 gP~w~~~~~~L~w~DI~-----------------~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~-Lv~~~~g---~ 87 (307)
T COG3386 29 GPVWDPDRGALLWVDIL-----------------GGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR-LIACEHG---V 87 (307)
T ss_pred CccCcCCCCEEEEEeCC-----------------CCeEEEecCCcCceEEEECCCCcccceeecCCCe-EEEEccc---c
Confidence 33444544 58887743 6799999999898888877777789999998874 8888875 4
Q ss_pred EEEEecCCcCcceeeeccC----CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 018144 232 RKYWLKGERKGKLETFAEN----LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 307 (360)
Q Consensus 232 ~~~~~~g~~~~~~~~~~~~----~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 307 (360)
.+++.+... ..+.+.+. ....|+...+|++|++|+++... . + .......+.
T Consensus 88 ~~~~~~~~~--~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~---~-------------------~~~~~~~~~ 142 (307)
T COG3386 88 RLLDPDTGG--KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-F---D-------------------LGKSEERPT 142 (307)
T ss_pred EEEeccCCc--eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-c---c-------------------cCccccCCc
Confidence 455543211 11333322 22368889999999999998772 0 0 000013345
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcccceeeEEE--ECCEEEEEeCCCCeEEEEeCC
Q 018144 308 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 308 ~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~--~~g~Lylgs~~~~~i~~~~l~ 360 (360)
+.|++++++|.+++.+.+. +....++.. ++..||+..-..++|.+++++
T Consensus 143 G~lyr~~p~g~~~~l~~~~----~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDD----LTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCc----EEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 7899999998887766541 112233444 346899999999999999874
No 28
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.78 E-value=1.9e-06 Score=88.66 Aligned_cols=186 Identities=16% Similarity=0.231 Sum_probs=119.3
Q ss_pred CCCcceEEEcC-CCCEEEEe-cCCeEEEEE--CC-----eeeEEE--------------------------------ecC
Q 018144 78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ--DG-----TWVNWK--------------------------------FID 116 (360)
Q Consensus 78 ~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~--~g-----~~~~~~--------------------------------~~~ 116 (360)
...---||+++ +|.||+++ ..-+|+|+. .+ .++.++ +..
T Consensus 406 ~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~ 485 (1899)
T KOG4659|consen 406 TSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKM 485 (1899)
T ss_pred ccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccC
Confidence 34555689998 99999999 456899986 22 222221 113
Q ss_pred CeEEEEeCCCcEEEEcCCC-eEEEeec---------------cCCccccccccEEEcC-CCcEEEEeCCCCCCCccceec
Q 018144 117 SHLIICDNANGLHKVSEDG-VENFLSY---------------VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLD 179 (360)
Q Consensus 117 g~L~v~~~~~gl~~~~~~g-~~~l~~~---------------~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~ 179 (360)
|.||.+| +..|-++|.+| +..+... .....+.+|.+++++| |+.+||-|.
T Consensus 486 g~lYfaD-~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~------------ 552 (1899)
T KOG4659|consen 486 GNLYFAD-GTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT------------ 552 (1899)
T ss_pred CcEEEec-ccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec------------
Confidence 5699988 44577888888 6665311 1123567999999998 778999764
Q ss_pred ccccCCccEEEEEcCCCCeEEEEeC---------------------CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 180 ILEGKPHGQLLKYDPSSNITTLVAD---------------------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 180 ~~~~~~~g~l~~~d~~tg~~~~~~~---------------------~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
+-|+++++. +++..+.. .+-.+..|+++++|. |||+|+.+.+|.|+..-+
T Consensus 553 -------nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~ 623 (1899)
T KOG4659|consen 553 -------NVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLS 623 (1899)
T ss_pred -------ceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEec
Confidence 345666654 44433211 123467899999995 999999987777654311
Q ss_pred CcCcceeeecc-------------------------CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHh
Q 018144 239 ERKGKLETFAE-------------------------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 293 (360)
Q Consensus 239 ~~~~~~~~~~~-------------------------~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~ 293 (360)
..++..+++. ..-..|..+++.+||.++||..+. -.+|++.++
T Consensus 624 -tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN-----------~rIr~Vs~~ 691 (1899)
T KOG4659|consen 624 -TDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN-----------SRIRKVSAR 691 (1899)
T ss_pred -cCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc-----------hhhhhhhhc
Confidence 0011111110 011247789999999999998763 346788777
Q ss_pred CCcc
Q 018144 294 YPKL 297 (360)
Q Consensus 294 ~~~~ 297 (360)
.|..
T Consensus 692 ~~~~ 695 (1899)
T KOG4659|consen 692 MAKY 695 (1899)
T ss_pred cccc
Confidence 6653
No 29
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.70 E-value=3.6e-05 Score=69.97 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=74.7
Q ss_pred CeEEEEeCC-CcEEEEc-CCC-eE-EEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 117 SHLIICDNA-NGLHKVS-EDG-VE-NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 117 g~L~v~~~~-~gl~~~~-~~g-~~-~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
..+|++... +.+..++ .++ .. .+.. + ..+..++++++|+ +|++.. ..+.|..
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~---~~~~~~~~~~~g~~l~~~~~-----------------~~~~l~~ 99 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPS---G---PDPELFALHPNGKILYIANE-----------------DDNLVTV 99 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccC---C---CCccEEEECCCCCEEEEEcC-----------------CCCeEEE
Confidence 347776544 4466667 555 32 2211 1 1245778899886 666532 2467888
Q ss_pred EcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 018144 192 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 270 (360)
Q Consensus 192 ~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~ 270 (360)
+|..+++..........++++++++||+.++++......+..++.+..+. ..... ....|..+.++++|. +|++.
T Consensus 100 ~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 100 IDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--VDNVL--VDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred EECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--EEEEE--cCCCccEEEECCCCCEEEEEc
Confidence 99876654333332345789999999997777765544566666543211 11111 223467788999997 44554
No 30
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.69 E-value=1.3e-07 Score=69.25 Aligned_cols=82 Identities=33% Similarity=0.521 Sum_probs=62.2
Q ss_pred ccEEEcCCCcEEEEeCCCCCCCccce--ecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 152 NDVVEASDGSLYFTVSSSKYLPHEYC--LDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 152 n~l~~d~dG~l~vtd~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
|||+.-....+|+|+.+.. .+.+. .+.+.+.+.+.|+.||+ ++.+...+++.+||||++++|++.|||++...+
T Consensus 1 NDIvavG~~sFy~TNDhyf--~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~ 76 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHYF--TDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAH 76 (86)
T ss_pred CCEEEECcCcEEEECchhh--CcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence 4666656678999987632 11221 22333456788999998 467788899999999999999999999999999
Q ss_pred EEEEEEec
Q 018144 230 RCRKYWLK 237 (360)
Q Consensus 230 ~i~~~~~~ 237 (360)
.|..|..+
T Consensus 77 ~I~vy~~~ 84 (86)
T PF01731_consen 77 SIHVYKRH 84 (86)
T ss_pred eEEEEEec
Confidence 99998753
No 31
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.64 E-value=3.1e-07 Score=87.53 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=63.8
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-C-cCcceEEEecCCCEEEEEeCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F-YFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l-~~pngia~~~dg~~l~v~~t~ 227 (360)
.+..+++|.+|++|+. ++. ++++||+.+++.-.+... + ...|.+..+-+|+ |||....
T Consensus 166 ~V~aLv~D~~g~lWvg------------------T~d-GL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdq 225 (671)
T COG3292 166 PVVALVFDANGRLWVG------------------TPD-GLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQ 225 (671)
T ss_pred cceeeeeeccCcEEEe------------------cCC-cceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEecc
Confidence 5667889999999994 333 699999988776554332 2 2345666777776 7777653
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCce----eEEcCCCCEEEEEec
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDN----INLAPDGTFWIAIIK 272 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~----i~~d~~G~lwva~~~ 272 (360)
++++++..|.... . ..+.+|++ +..|.+|++|+++..
T Consensus 226 --Gv~~~e~~G~~~s---n---~~~~lp~~~I~ll~qD~qG~lWiGTen 266 (671)
T COG3292 226 --GVYLQEAEGWRAS---N---WGPMLPSGNILLLVQDAQGELWIGTEN 266 (671)
T ss_pred --ceEEEchhhcccc---c---cCCCCcchheeeeecccCCCEEEeecc
Confidence 4888887653221 1 22335655 335999999999986
No 32
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=2.1e-05 Score=75.08 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=114.2
Q ss_pred CCcceEEEcCCCC-EEEEe-cCCeEEEEE-C-CeeeE------------EEecCCeEEEEeCC---CcEEEEc-CCC-eE
Q 018144 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ-D-GTWVN------------WKFIDSHLIICDNA---NGLHKVS-EDG-VE 137 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~-~~G~I~~~~-~-g~~~~------------~~~~~g~L~v~~~~---~gl~~~~-~~g-~~ 137 (360)
..|.++++.+.|. +|+.+ .++.|..++ . .+... +...++.+||++.. +-+..++ .++ ..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 7899999998776 99988 568888887 2 21111 11235689999984 3466677 444 22
Q ss_pred EEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-----EeCCCcCcce
Q 018144 138 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFANG 211 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-----~~~~l~~png 211 (360)
.. ...+ ..|.+++++++|+ +|++|.. .+.|..+|.++..+.. .......|.+
T Consensus 154 ~~--~~vG---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~ 211 (381)
T COG3391 154 AT--IPVG---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAG 211 (381)
T ss_pred EE--EecC---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCce
Confidence 21 1122 1468999999997 9999743 5689999987655543 1234568999
Q ss_pred EEEecCCCEEEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 018144 212 VALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
+++++||+.+|+++... +.+.+++...........-. ... .|.++.++++|. +|++...
T Consensus 212 i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 212 IAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred EEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecC
Confidence 99999999999999987 58999987543222211111 122 588999999996 5555433
No 33
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.55 E-value=2.7e-05 Score=69.23 Aligned_cols=180 Identities=12% Similarity=0.157 Sum_probs=95.9
Q ss_pred CCCCCcceEEEcCC-CCEEEEe-cCCeEEEEE-CCeee------------EEEec-CCeEEEEeC-CCcEEEEc--C-CC
Q 018144 76 GSVNHPEDASMDKN-GVIYTAT-RDGWIKRLQ-DGTWV------------NWKFI-DSHLIICDN-ANGLHKVS--E-DG 135 (360)
Q Consensus 76 ~~~~~Pe~i~~d~~-G~l~v~~-~~G~I~~~~-~g~~~------------~~~~~-~g~L~v~~~-~~gl~~~~--~-~g 135 (360)
+....+.+|+++++ +.||+.. ..+.|+.++ +|++. .++.. ++.+.+.+. .+.++.++ . +.
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 44556999999984 7799776 778899999 77542 22222 345555553 34566666 2 22
Q ss_pred -e-----EEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcC--CCCeEEEEe---
Q 018144 136 -V-----ENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVA--- 203 (360)
Q Consensus 136 -~-----~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~tg~~~~~~--- 203 (360)
. +.+.............+|+.|+.+ ++|++- |.. -.+|+.++. .........
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---------------E~~-P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---------------ERK-PKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---------------ESS-SEEEEEEESTT-SS--EEEE-HH
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---------------CCC-ChhhEEEccccCccceeeccccc
Confidence 2 112212222223457899999875 688752 122 246777764 222222211
Q ss_pred -----CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCC------CCCceeEEcCCCCEEEEEec
Q 018144 204 -----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP------GAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 204 -----~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~------g~pd~i~~d~~G~lwva~~~ 272 (360)
.....+.+++++|..+.||+-+....+|..++.+|.......... ... .-|.||++|++|+|||..-.
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~-g~~gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR-GFHGLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST-TGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC-cccCcccccCCccEEEECCCCCEEEEcCC
Confidence 123468899999988889999988899999998775333222221 111 13889999999999998754
No 34
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.40 E-value=0.00089 Score=63.74 Aligned_cols=127 Identities=15% Similarity=0.116 Sum_probs=74.7
Q ss_pred EEcCCCCEEEEecCCeEEEEE--CCeeeE-----------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCcccc
Q 018144 85 SMDKNGVIYTATRDGWIKRLQ--DGTWVN-----------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLR 149 (360)
Q Consensus 85 ~~d~~G~l~v~~~~G~I~~~~--~g~~~~-----------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~ 149 (360)
+++ ++.+|+++.+|.|+.+| +|+..- ....++.+|+++....++.+| .+| ...- ....+....
T Consensus 62 ~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~~~~~~~ 139 (377)
T TIGR03300 62 AVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWR-AKLSSEVLS 139 (377)
T ss_pred EEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeee-eccCceeec
Confidence 444 67999999999999999 675320 112367899988777899999 678 4322 122221111
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcC------cceEEEecCCCEEEE
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF------ANGVALSRDEDYVVV 223 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~------pngia~~~dg~~l~v 223 (360)
.| .+ .++.+|+.. ..|.|+.+|+++|+.......... .....+. ++ .+|+
T Consensus 140 ~p---~v-~~~~v~v~~------------------~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~ 195 (377)
T TIGR03300 140 PP---LV-ANGLVVVRT------------------NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLV 195 (377)
T ss_pred CC---EE-ECCEEEEEC------------------CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEE
Confidence 11 22 356788742 357899999988876543221110 0111222 33 4665
Q ss_pred EeCCCCEEEEEEecC
Q 018144 224 CESWKFRCRKYWLKG 238 (360)
Q Consensus 224 ~~t~~~~i~~~~~~g 238 (360)
.. ..++++.+++..
T Consensus 196 ~~-~~g~v~ald~~t 209 (377)
T TIGR03300 196 GF-AGGKLVALDLQT 209 (377)
T ss_pred EC-CCCEEEEEEccC
Confidence 54 356899998753
No 35
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.39 E-value=0.00054 Score=64.07 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=69.7
Q ss_pred EEec-CCCEEEEEeCCCCEEEEEEecCCcCcceeeec---cC--CCC-CCce---eEEcCCC-CEEEEEecCchhHHHHh
Q 018144 213 ALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFA---EN--LPG-APDN---INLAPDG-TFWIAIIKLDARRMKIL 281 (360)
Q Consensus 213 a~~~-dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~---~~--~~g-~pd~---i~~d~~G-~lwva~~~~~~~~~~~~ 281 (360)
.+.+ ||+.+|++.. +.|+.+++.+........+. .. ..+ .|.+ ++++++| ++||++.+.. ++-
T Consensus 200 ~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~----~~t 273 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRA----KWT 273 (352)
T ss_pred ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCc----ccc
Confidence 3455 8887877766 78999997654333322221 11 011 3555 9999877 6999765421 000
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEE--ECC-EEEEEeCCCCeEEEE
Q 018144 282 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ--VDN-HLYVISLTSNFIGKV 357 (360)
Q Consensus 282 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~--~~g-~Lylgs~~~~~i~~~ 357 (360)
+ ..+.+.|..+|. .++++..+.... .+.++.. ++. .||+.+-.++.|.++
T Consensus 274 h---------------------k~~~~~V~ViD~~t~kvi~~i~vG~-----~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 274 H---------------------KTASRFLFVVDAKTGKRLRKIELGH-----EIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred c---------------------cCCCCEEEEEECCCCeEEEEEeCCC-----ceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 0 112357899996 577777776532 2434444 346 788888888889988
Q ss_pred eC
Q 018144 358 QL 359 (360)
Q Consensus 358 ~l 359 (360)
+.
T Consensus 328 D~ 329 (352)
T TIGR02658 328 DA 329 (352)
T ss_pred EC
Confidence 75
No 36
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.36 E-value=4.1e-05 Score=73.70 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=100.5
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEEec-CCeEEEEE-C-CeeeE------E------------E--------ecCCeEEE
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ-D-GTWVN------W------------K--------FIDSHLII 121 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~~~-~G~I~~~~-~-g~~~~------~------------~--------~~~g~L~v 121 (360)
+.+..+ |..|++|++.++|.+|++.. .|+|++++ + +..+. + + ..++.||+
T Consensus 23 ~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 23 KVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 455555 89999999999999999997 69999998 3 32111 0 0 01235788
Q ss_pred EeC----------CCcEEEEc-C-C-C----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCC--CCCcccee---c
Q 018144 122 CDN----------ANGLHKVS-E-D-G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSK--YLPHEYCL---D 179 (360)
Q Consensus 122 ~~~----------~~gl~~~~-~-~-g----~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~--~~~~~~~~---~ 179 (360)
+-. ...|.++. . . . .+.+....+....+.-..|++++||.|||+..... ........ .
T Consensus 102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ 181 (454)
T TIGR03606 102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQ 181 (454)
T ss_pred EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchhc
Confidence 641 23466665 2 1 1 23333322222234456789999999999875431 10000000 0
Q ss_pred -------c---cccCCccEEEEEcCCCCe------------EEEEeCCCcCcceEEEecCCCEEEEEeCCC---CEEEEE
Q 018144 180 -------I---LEGKPHGQLLKYDPSSNI------------TTLVADGFYFANGVALSRDEDYVVVCESWK---FRCRKY 234 (360)
Q Consensus 180 -------~---~~~~~~g~l~~~d~~tg~------------~~~~~~~l~~pngia~~~dg~~l~v~~t~~---~~i~~~ 234 (360)
. -.....|.|+|+|++ |+ .+.+..++..|.|++++++|+ ||++|.+. ..|.++
T Consensus 182 ~~~~~~~~~~~d~~~~~GkILRin~D-GsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp~~~DEiN~I 259 (454)
T TIGR03606 182 HTPTQQELNGKDYHAYMGKVLRLNLD-GSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGPNSDDELNII 259 (454)
T ss_pred cccccccccccCcccCceEEEEEcCC-CCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCCCCCcEEEEe
Confidence 0 011245889999987 43 356777899999999999875 99999765 456665
Q ss_pred E
Q 018144 235 W 235 (360)
Q Consensus 235 ~ 235 (360)
.
T Consensus 260 ~ 260 (454)
T TIGR03606 260 V 260 (454)
T ss_pred c
Confidence 4
No 37
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.33 E-value=7.5e-05 Score=66.21 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=36.4
Q ss_pred ccEEEEEcCCCCeEEEEeC--C--------------CcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 186 HGQLLKYDPSSNITTLVAD--G--------------FYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~--~--------------l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
...|+++||.||++....+ + ...-||||++++++.+||+.-.=.+++.+.+
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 4589999999999876432 0 1246999999999999999765456766654
No 38
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.26 E-value=0.00029 Score=63.61 Aligned_cols=180 Identities=19% Similarity=0.224 Sum_probs=110.3
Q ss_pred CCCcceEEEcCCCCEEEEecCCeEEEE---E----CCeee---------------------EEEecCCeEEEEeCC-CcE
Q 018144 78 VNHPEDASMDKNGVIYTATRDGWIKRL---Q----DGTWV---------------------NWKFIDSHLIICDNA-NGL 128 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~~G~I~~~---~----~g~~~---------------------~~~~~~g~L~v~~~~-~gl 128 (360)
+..|.+++..+ +.||+++.. .|+++ + .++.. .+...++.+|+.+.. .-+
T Consensus 48 F~r~MGl~~~~-~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~~~~~l~fVNT~fSCL 125 (335)
T TIGR03032 48 FPRPMGLAVSP-QSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLALGAGRLLFVNTLFSCL 125 (335)
T ss_pred cCccceeeeeC-CeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheeecCCcEEEEECcceeE
Confidence 67888998874 579998854 47777 2 11100 111223445544433 344
Q ss_pred EEEcCCC-eEE-----EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE
Q 018144 129 HKVSEDG-VEN-----FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 202 (360)
Q Consensus 129 ~~~~~~g-~~~-----l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~ 202 (360)
..++++- +.. +.+......--..|+++.....--|+|--+..-....|. +.+..|+++ +|-.+++ .+
T Consensus 126 atl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR----~~~~~gG~v-idv~s~e--vl 198 (335)
T TIGR03032 126 ATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR----EGRRDGGCV-IDIPSGE--VV 198 (335)
T ss_pred EEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc----ccccCCeEE-EEeCCCC--EE
Confidence 4555333 222 112111111135789999765468887543222223333 233455655 6666564 46
Q ss_pred eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCc
Q 018144 203 ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLD 274 (360)
Q Consensus 203 ~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~ 274 (360)
.+++.+|.+-.+. ||+ ||+++++.+++.++|.+. +..+... ..||+|.|+.+. |+ ++|++..+|
T Consensus 199 ~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R 263 (335)
T TIGR03032 199 ASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR 263 (335)
T ss_pred EcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence 7899999999987 454 999999999999999752 4555665 578999999998 64 678888876
No 39
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.26 E-value=0.00022 Score=68.40 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=107.6
Q ss_pred CCCEEEEecCCeEEEEE--CCeee--E------E---EecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccc--ccc
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWV--N------W---KFIDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKL--RFA 151 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~--~------~---~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~--~~~ 151 (360)
++.+|+++.+|.++.+| +|+.. . . ...++.+|+++....++.+| ++| ...-.. .....+ ...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVN-LDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeec-CCCCcccccCC
Confidence 67899999889999999 67421 0 0 12367889887666799999 788 332211 111100 000
Q ss_pred ccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcce---------EEEec--CCCE
Q 018144 152 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG---------VALSR--DEDY 220 (360)
Q Consensus 152 n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~png---------ia~~~--dg~~ 220 (360)
..-+++ +|.+|+.. ..|.++.+|.++|+...... ...|.+ +..+| .++.
T Consensus 199 ~sP~v~-~~~v~~~~------------------~~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 199 SAPATA-FGGAIVGG------------------DNGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred CCCEEE-CCEEEEEc------------------CCCEEEEEEccCChhhheec-cccCCCccchhcccccCCCcEEECCE
Confidence 111232 45677742 35788999988887543211 111110 10111 2346
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccc
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 300 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 300 (360)
+|++.. .+.++.++.+..+ ..+..... .+..+.. .+|++|++...
T Consensus 259 vy~~~~-~g~l~ald~~tG~----~~W~~~~~-~~~~~~~-~~~~vy~~~~~---------------------------- 303 (394)
T PRK11138 259 VYALAY-NGNLVALDLRSGQ----IVWKREYG-SVNDFAV-DGGRIYLVDQN---------------------------- 303 (394)
T ss_pred EEEEEc-CCeEEEEECCCCC----EEEeecCC-CccCcEE-ECCEEEEEcCC----------------------------
Confidence 888775 4689999975432 12321111 1223333 35689998765
Q ss_pred cccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 301 FITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 301 ~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
+.++.+|. +|+++.......+. ..++.+..+|+||+++..+
T Consensus 304 -------g~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~~G 345 (394)
T PRK11138 304 -------DRVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDSEG 345 (394)
T ss_pred -------CeEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeCCC
Confidence 67888886 57765544332222 2233344577788776544
No 40
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.24 E-value=0.00013 Score=70.29 Aligned_cols=109 Identities=21% Similarity=0.314 Sum_probs=71.4
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-------C-CCcCcceEEEecCC-
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-------D-GFYFANGVALSRDE- 218 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-------~-~l~~pngia~~~dg- 218 (360)
+..|.+|++.+||++|||.. ..|+|+++++.++..+.+. . +.....||+++||=
T Consensus 29 L~~Pw~maflPDG~llVtER-----------------~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTER-----------------ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM 91 (454)
T ss_pred CCCceEEEEcCCCeEEEEEe-----------------cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence 45799999999999999742 2488999987655433221 1 23456799999762
Q ss_pred -----CEEEEEeCC---------CCEEEEEEecCC--cCcceeeeccCCCCC----CceeEEcCCCCEEEEEecC
Q 018144 219 -----DYVVVCESW---------KFRCRKYWLKGE--RKGKLETFAENLPGA----PDNINLAPDGTFWIAIIKL 273 (360)
Q Consensus 219 -----~~l~v~~t~---------~~~i~~~~~~g~--~~~~~~~~~~~~~g~----pd~i~~d~~G~lwva~~~~ 273 (360)
..+|++-+. ..+|.|+.++.. .....+.+....|.. -..|++++||.|||++...
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 468888522 468999987532 233233333333321 2358899999999998764
No 41
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.0039 Score=55.82 Aligned_cols=222 Identities=13% Similarity=0.173 Sum_probs=134.1
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeE-------------EEecCCeEEEEeC--CCcEEEEc-C-CC-e
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVN-------------WKFIDSHLIICDN--ANGLHKVS-E-DG-V 136 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~-------------~~~~~g~L~v~~~--~~gl~~~~-~-~g-~ 136 (360)
-..+.+|.++.+|...+++ .+..|.-++ +|+... |......+.-++. +.-|..++ . +. +
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 3578899999999887775 677787787 664332 2222333333332 12344444 2 33 4
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEec
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 216 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~ 216 (360)
+.+ .|.. ..++.|.+.|.+..+++-+ .+..|..+|..+.+...+. .+..+.-+|+||
T Consensus 94 RYF----~GH~-~~V~sL~~sP~~d~FlS~S-----------------~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp 150 (311)
T KOG1446|consen 94 RYF----PGHK-KRVNSLSVSPKDDTFLSSS-----------------LDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDP 150 (311)
T ss_pred EEc----CCCC-ceEEEEEecCCCCeEEecc-----------------cCCeEEeeEecCCCCceEE-ecCCCcceeECC
Confidence 433 2322 3588999999889999633 3456777776544443332 244566788999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC--CCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHh
Q 018144 217 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG--APDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAA 293 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g--~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~ 293 (360)
+|- ++.+...+..|..||+.--..+-++.|.-+.+. --.+|.+.++|. |.+++..
T Consensus 151 ~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--------------------- 208 (311)
T KOG1446|consen 151 EGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--------------------- 208 (311)
T ss_pred CCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---------------------
Confidence 984 666666666888899753223444444322111 134688899996 6666654
Q ss_pred CCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 294 YPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
+.++.+|. +|.+...+...... ....-++.+. +++..+++....+|.++.+
T Consensus 209 --------------s~~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 209 --------------SFIYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred --------------CcEEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 57788884 89988888654332 1122444453 6777777777778877765
No 42
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.21 E-value=0.00062 Score=65.34 Aligned_cols=197 Identities=18% Similarity=0.230 Sum_probs=112.3
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeEEE-----------------ecCCeEEEEeCCCcEEEEc-CCC-eEEEee--ccCC
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVNWK-----------------FIDSHLIICDNANGLHKVS-EDG-VENFLS--YVNG 145 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~~~-----------------~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~--~~~~ 145 (360)
++.+|+++.+|.|+.+| +|+.. |. ..++.+|++.....++.++ .+| ...-.. ...+
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~ 238 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVK-WTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG 238 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEe-eeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence 56777877788888888 66432 11 1245678877666788888 677 322111 0000
Q ss_pred -cc---cccc-ccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCE
Q 018144 146 -SK---LRFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 146 -~~---~~~~-n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~ 220 (360)
.. +... ..-.+ .+|.+|+++ ..|.++.+|..+|+..... .+..+..++. +++.
T Consensus 239 ~~~~~~~~~~~~sP~v-~~~~vy~~~------------------~~g~l~ald~~tG~~~W~~-~~~~~~~~~~--~~~~ 296 (394)
T PRK11138 239 ATEIDRLVDVDTTPVV-VGGVVYALA------------------YNGNLVALDLRSGQIVWKR-EYGSVNDFAV--DGGR 296 (394)
T ss_pred ccchhcccccCCCcEE-ECCEEEEEE------------------cCCeEEEEECCCCCEEEee-cCCCccCcEE--ECCE
Confidence 00 0000 11122 257888853 2478999999988764322 2333333443 3446
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccC-CC-CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccc
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAEN-LP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 298 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-~~-g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 298 (360)
+|+... .++|+.++.+..+ ..+... .. .......+ .+|.+|++...
T Consensus 297 vy~~~~-~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~-------------------------- 344 (394)
T PRK11138 297 IYLVDQ-NDRVYALDTRGGV----ELWSQSDLLHRLLTAPVL-YNGYLVVGDSE-------------------------- 344 (394)
T ss_pred EEEEcC-CCeEEEEECCCCc----EEEcccccCCCcccCCEE-ECCEEEEEeCC--------------------------
Confidence 888875 5689999985432 122111 11 11111222 36789998765
Q ss_pred cccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCC
Q 018144 299 SQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSN 352 (360)
Q Consensus 299 ~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~ 352 (360)
+.|+.+|+ +|+++..+....+. ..+..+..+++||+++..+.
T Consensus 345 ---------G~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~~~~l~v~t~~G~ 387 (394)
T PRK11138 345 ---------GYLHWINREDGRFVAQQKVDSSG---FLSEPVVADDKLLIQARDGT 387 (394)
T ss_pred ---------CEEEEEECCCCCEEEEEEcCCCc---ceeCCEEECCEEEEEeCCce
Confidence 67888986 79988877653221 23344456889999987664
No 43
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.19 E-value=3.3e-05 Score=72.28 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=94.7
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE-EEEe-------CCCcCcceEEEecC---
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVA-------DGFYFANGVALSRD--- 217 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~-~~~~-------~~l~~pngia~~~d--- 217 (360)
+.|..|++.+||++||++ ..|+|++++.+ +.. ..+. .+.....|++++|+
T Consensus 2 ~~P~~~a~~pdG~l~v~e------------------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~ 62 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAE------------------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFAS 62 (331)
T ss_dssp SSEEEEEEETTSCEEEEE------------------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCC
T ss_pred CCceEEEEeCCCcEEEEe------------------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCC
Confidence 457899999999999974 35899999844 554 2221 12345679999994
Q ss_pred CCEEEEEeCCC--------CEEEEEEecCC--cCcceeeeccCCCC------CCceeEEcCCCCEEEEEecCchhHHHHh
Q 018144 218 EDYVVVCESWK--------FRCRKYWLKGE--RKGKLETFAENLPG------APDNINLAPDGTFWIAIIKLDARRMKIL 281 (360)
Q Consensus 218 g~~l~v~~t~~--------~~i~~~~~~g~--~~~~~~~~~~~~~g------~pd~i~~d~~G~lwva~~~~~~~~~~~~ 281 (360)
+..+|++.+.. .+|.|+..+.. .....+.+....+. ....|.+++||.|||+.....+. -.
T Consensus 63 n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~---~~ 139 (331)
T PF07995_consen 63 NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND---DN 139 (331)
T ss_dssp C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG---GG
T ss_pred CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc---cc
Confidence 44799988743 47889887654 22333333222221 12348899999999998764330 00
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEE-------------EEEeCCCCCcccceeeEEEE-C-CEEEE
Q 018144 282 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-------------RNLVDPTGQLMSFVTSGLQV-D-NHLYV 346 (360)
Q Consensus 282 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-------------~~~~~~~g~~~~~~t~~~~~-~-g~Lyl 346 (360)
.+. .....+.|+|++++|++- +.|.. | +..+..+.++ . |+||.
T Consensus 140 ~~~------------------~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~--G--lRN~~~~~~d~~tg~l~~ 197 (331)
T PF07995_consen 140 AQD------------------PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY--G--LRNPFGLAFDPNTGRLWA 197 (331)
T ss_dssp GCS------------------TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEE
T ss_pred ccc------------------cccccceEEEecccCcCCCCCccccCCCceEEEEEe--C--CCccccEEEECCCCcEEE
Confidence 000 122357899999998731 11211 2 2334566666 4 89999
Q ss_pred EeCCCC
Q 018144 347 ISLTSN 352 (360)
Q Consensus 347 gs~~~~ 352 (360)
+....+
T Consensus 198 ~d~G~~ 203 (331)
T PF07995_consen 198 ADNGPD 203 (331)
T ss_dssp EEE-SS
T ss_pred EccCCC
Confidence 986543
No 44
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.19 E-value=0.00013 Score=68.07 Aligned_cols=122 Identities=12% Similarity=0.047 Sum_probs=85.4
Q ss_pred CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC---------CCCE
Q 018144 160 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES---------WKFR 230 (360)
Q Consensus 160 G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t---------~~~~ 230 (360)
.++|++|.... +. .++|+.+|.+++++.-.......|+++ +++||+.+|++++ ....
T Consensus 13 ~~v~V~d~~~~------------~~-~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~ 78 (352)
T TIGR02658 13 RRVYVLDPGHF------------AA-TTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDY 78 (352)
T ss_pred CEEEEECCccc------------cc-CceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCE
Confidence 47999886511 11 278999999988876655566789997 9999999999999 7788
Q ss_pred EEEEEecCCcCcceeeeccCC-----CCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccC
Q 018144 231 CRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 304 (360)
Q Consensus 231 i~~~~~~g~~~~~~~~~~~~~-----~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 304 (360)
|..||....+... ++-.... ...|..+++++||+ +||+...+
T Consensus 79 V~v~D~~t~~~~~-~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p------------------------------- 126 (352)
T TIGR02658 79 VEVIDPQTHLPIA-DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP------------------------------- 126 (352)
T ss_pred EEEEECccCcEEe-EEccCCCchhhccCccceEEECCCCCEEEEecCCC-------------------------------
Confidence 9999975432111 1110001 11466899999995 99988653
Q ss_pred CCceEEEEECC-CCcEEEEEeCCCCC
Q 018144 305 GGGAHLIHVAE-DGTIIRNLVDPTGQ 329 (360)
Q Consensus 305 ~~~~~v~~~~~-~g~~~~~~~~~~g~ 329 (360)
.+.|..+|. .++++..+..|++.
T Consensus 127 --~~~V~VvD~~~~kvv~ei~vp~~~ 150 (352)
T TIGR02658 127 --SPAVGVVDLEGKAFVRMMDVPDCY 150 (352)
T ss_pred --CCEEEEEECCCCcEEEEEeCCCCc
Confidence 357788884 67777777776653
No 45
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.18 E-value=0.00059 Score=62.40 Aligned_cols=173 Identities=16% Similarity=0.243 Sum_probs=99.7
Q ss_pred ceEEEcCCCCEEEEecC-----C--------eEEEEE--CCee-eEEE----------------ec-------CCeEEEE
Q 018144 82 EDASMDKNGVIYTATRD-----G--------WIKRLQ--DGTW-VNWK----------------FI-------DSHLIIC 122 (360)
Q Consensus 82 e~i~~d~~G~l~v~~~~-----G--------~I~~~~--~g~~-~~~~----------------~~-------~g~L~v~ 122 (360)
-++.+|+.|.||+-+.+ + +|+.+| ++++ +.+. .. ++.+||+
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt 83 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT 83 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe
Confidence 46889999999998732 1 788888 5543 2211 11 1569999
Q ss_pred eCC-CcEEEEc-CCC-eEE-Eeecc-----------CCcccc---ccccEEEcC---CC-cEEEEeCCCCCCCccceecc
Q 018144 123 DNA-NGLHKVS-EDG-VEN-FLSYV-----------NGSKLR---FANDVVEAS---DG-SLYFTVSSSKYLPHEYCLDI 180 (360)
Q Consensus 123 ~~~-~gl~~~~-~~g-~~~-l~~~~-----------~~~~~~---~~n~l~~d~---dG-~l~vtd~~~~~~~~~~~~~~ 180 (360)
|.. .||+.+| .+| ... +.... .+..+. .+.+++..+ +| .||+.--
T Consensus 84 D~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l------------- 150 (287)
T PF03022_consen 84 DSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL------------- 150 (287)
T ss_dssp ETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET-------------
T ss_pred CCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeC-------------
Confidence 987 6999999 777 433 32111 111121 133445433 43 4666421
Q ss_pred cccCCccEEEEEcCC---CC----------eEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc-Ccceee
Q 018144 181 LEGKPHGQLLKYDPS---SN----------ITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER-KGKLET 246 (360)
Q Consensus 181 ~~~~~~g~l~~~d~~---tg----------~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~-~~~~~~ 246 (360)
....+|++..+ +. +++.+..-.....|++++++|. ||+++...+.|.+++.+++. ..+.++
T Consensus 151 ----ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~ 225 (287)
T PF03022_consen 151 ----SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFEI 225 (287)
T ss_dssp ----T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEEE
T ss_pred ----CCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchhe
Confidence 12246665421 00 1122221124567999999885 99999999999999987642 224445
Q ss_pred eccCC--CCCCceeEEcC--CCCEEEEEec
Q 018144 247 FAENL--PGAPDNINLAP--DGTFWIAIIK 272 (360)
Q Consensus 247 ~~~~~--~g~pd~i~~d~--~G~lwva~~~ 272 (360)
+.... --.||++.+++ +|.||+.+..
T Consensus 226 l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 226 LAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred eEEcCceeeccceeeeccccCceEEEEECc
Confidence 54322 23799999999 9999998865
No 46
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.16 E-value=0.00082 Score=64.01 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=72.8
Q ss_pred CccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeecc-CCCC-CCceeEEcC
Q 018144 185 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPG-APDNINLAP 262 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-~~~g-~pd~i~~d~ 262 (360)
..|.++.+|.++|+...... .......++ +++.+|++.. .+.|+.++.+..+. .+.. ...+ ......+ .
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~~-~G~l~~~d~~tG~~----~W~~~~~~~~~~ssp~i-~ 319 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTDA-DGVVVALDRRSGSE----LWKNDELKYRQLTAPAV-V 319 (377)
T ss_pred cCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEECC-CCeEEEEECCCCcE----EEccccccCCccccCEE-E
Confidence 35789999998887654332 222333333 3446888864 57899999753321 1111 1111 1111222 2
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEEC
Q 018144 263 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD 341 (360)
Q Consensus 263 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~ 341 (360)
++.+|++... +.|+.+|+ +|+++..+....+. ..++.+..+
T Consensus 320 g~~l~~~~~~-----------------------------------G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~~~ 361 (377)
T TIGR03300 320 GGYLVVGDFE-----------------------------------GYLHWLSREDGSFVARLKTDGSG---IASPPVVVG 361 (377)
T ss_pred CCEEEEEeCC-----------------------------------CEEEEEECCCCCEEEEEEcCCCc---cccCCEEEC
Confidence 4678888755 68899997 59998887754421 233345667
Q ss_pred CEEEEEeCCCCeE
Q 018144 342 NHLYVISLTSNFI 354 (360)
Q Consensus 342 g~Lylgs~~~~~i 354 (360)
++||+++..+.-.
T Consensus 362 ~~l~v~~~dG~l~ 374 (377)
T TIGR03300 362 DGLLVQTRDGDLY 374 (377)
T ss_pred CEEEEEeCCceEE
Confidence 8899999876543
No 47
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.10 E-value=7.8e-05 Score=74.10 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=94.6
Q ss_pred eEecCCCCCCcceEEEcC-CCCEEEEec-CCeEEEEE-CCeeeEEEecCCeEEEEeCCCcEEEEcCCCeEEEe-eccCCc
Q 018144 71 IKVGEGSVNHPEDASMDK-NGVIYTATR-DGWIKRLQ-DGTWVNWKFIDSHLIICDNANGLHKVSEDGVENFL-SYVNGS 146 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~-~G~l~v~~~-~G~I~~~~-~g~~~~~~~~~g~L~v~~~~~gl~~~~~~g~~~l~-~~~~~~ 146 (360)
++|....|..||+||+|- .-++|.++. ..+|-.-. +|+.+ ++|. +.
T Consensus 1060 ~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~r--------------------------kvLf~td---- 1109 (1289)
T KOG1214|consen 1060 ETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSER--------------------------KVLFYTD---- 1109 (1289)
T ss_pred ceeecccCCCccceeeeeccceeeeeccccchhheeecCCcee--------------------------eEEEeec----
Confidence 455556688999999984 456776663 22222111 22211 1111 11
Q ss_pred cccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE--EEeCCCcCcceEEEecCCCEEEE
Q 018144 147 KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT--LVADGFYFANGVALSRDEDYVVV 223 (360)
Q Consensus 147 ~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~--~~~~~l~~pngia~~~dg~~l~v 223 (360)
+-.|.+|++|+ .|+||.||.... +-.|-+.+.+ |+-. .+.+++..|||+.+++..+.|-|
T Consensus 1110 -LVNPR~iv~D~~rgnLYwtDWnRe---------------nPkIets~mD-G~NrRilin~DigLPNGLtfdpfs~~LCW 1172 (1289)
T KOG1214|consen 1110 -LVNPRAIVVDPIRGNLYWTDWNRE---------------NPKIETSSMD-GENRRILINTDIGLPNGLTFDPFSKLLCW 1172 (1289)
T ss_pred -ccCcceEEeecccCceeecccccc---------------CCcceeeccC-CccceEEeecccCCCCCceeCcccceeeE
Confidence 12477888987 569999986532 1123333333 2222 23467889999999999999999
Q ss_pred EeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 224 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 224 ~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+.+++|+..+.++|. +...++. ++. +|-+|.-+.+. +|-..+.
T Consensus 1173 vDAGt~rleC~~p~g~--gRR~i~~-~Lq-YPF~itsy~~~-fY~TDWk 1216 (1289)
T KOG1214|consen 1173 VDAGTKRLECTLPDGT--GRRVIQN-NLQ-YPFSITSYADH-FYHTDWK 1216 (1289)
T ss_pred EecCCcceeEecCCCC--cchhhhh-ccc-Cceeeeecccc-ceeeccc
Confidence 9999999999988763 3343432 333 68888888775 8888886
No 48
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.09 E-value=0.0015 Score=58.19 Aligned_cols=186 Identities=14% Similarity=0.178 Sum_probs=97.6
Q ss_pred CCeEEEEeC-CCcEEEEcCCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 116 DSHLIICDN-ANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 116 ~g~L~v~~~-~~gl~~~~~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
.++||...- ...++.++.+| ++.+. ..+ +.-+.+|+.-.+|.+.+++-. .++|+.+
T Consensus 33 ~~tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~Er-----------------~~~L~~~ 91 (248)
T PF06977_consen 33 TGTLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSEER-----------------DQRLYIF 91 (248)
T ss_dssp TTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEETT-----------------TTEEEEE
T ss_pred CCeEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEEcC-----------------CCcEEEE
Confidence 577885443 35677788666 44432 222 345788998888888886532 3455554
Q ss_pred cC--CCCeE-----EEEeCCC-----cCcceEEEecCCCEEEEEeCCC-CEEEEEEe--cCCcCcce--eeec-c-CCCC
Q 018144 193 DP--SSNIT-----TLVADGF-----YFANGVALSRDEDYVVVCESWK-FRCRKYWL--KGERKGKL--ETFA-E-NLPG 253 (360)
Q Consensus 193 d~--~tg~~-----~~~~~~l-----~~pngia~~~dg~~l~v~~t~~-~~i~~~~~--~g~~~~~~--~~~~-~-~~~g 253 (360)
+. .+... +.+.-++ ..--|+|+++.++.||++.-.. .+|+.++. .+...... ..+. . ..-.
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 43 32222 1122122 1235999999887788775433 35666654 11111000 0000 0 0112
Q ss_pred CCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCC----
Q 018144 254 APDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG---- 328 (360)
Q Consensus 254 ~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g---- 328 (360)
-|.++.+|+ .|++||-... ...|+.+|.+|+++..+.-..|
T Consensus 172 d~S~l~~~p~t~~lliLS~e----------------------------------s~~l~~~d~~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDE----------------------------------SRLLLELDRQGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp ---EEEEETTTTEEEEEETT----------------------------------TTEEEEE-TT--EEEEEE-STTGGG-
T ss_pred cccceEEcCCCCeEEEEECC----------------------------------CCeEEEECCCCCEEEEEEeCCcccCc
Confidence 378899986 5689987665 3489999999999988876654
Q ss_pred -CcccceeeEEEEC-CEEEEEeCCCCeEEEE
Q 018144 329 -QLMSFVTSGLQVD-NHLYVISLTSNFIGKV 357 (360)
Q Consensus 329 -~~~~~~t~~~~~~-g~Lylgs~~~~~i~~~ 357 (360)
..+..+-+++.+. |+|||.|= .|..-++
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred ccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence 2356788898885 99999984 6666665
No 49
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.09 E-value=0.0027 Score=56.00 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=93.1
Q ss_pred EEcCCCCEEEEecCCeEEEEE--CCeeeE-E----------EecCCeEEEEeCCCcEEEEc-CCC-eEEE-ee-ccCCcc
Q 018144 85 SMDKNGVIYTATRDGWIKRLQ--DGTWVN-W----------KFIDSHLIICDNANGLHKVS-EDG-VENF-LS-YVNGSK 147 (360)
Q Consensus 85 ~~d~~G~l~v~~~~G~I~~~~--~g~~~~-~----------~~~~g~L~v~~~~~gl~~~~-~~g-~~~l-~~-~~~~~~ 147 (360)
....++.+|+++.++.|+.++ +|+..- + ...++.+|++...+.++.++ .+| ...- .. ..+...
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 454588999999999999999 775321 1 12367899988767899999 888 4332 12 111111
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc------------ceEEEe
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA------------NGVALS 215 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p------------ngia~~ 215 (360)
........++ ++.+|+.. ..+.|+.+|+++|+....... ..+ ++-.+.
T Consensus 112 ~~~~~~~~~~-~~~~~~~~------------------~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (238)
T PF13360_consen 112 VRSSSSPAVD-GDRLYVGT------------------SSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVI 171 (238)
T ss_dssp TB--SEEEEE-TTEEEEEE------------------TCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEEC
T ss_pred cccccCceEe-cCEEEEEe------------------ccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEE
Confidence 2223334444 45678753 247899999999987543222 221 133333
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
.++ .+|++...+ ++..++....+ ..+... ...+.......++.+|++..
T Consensus 172 ~~~-~v~~~~~~g-~~~~~d~~tg~----~~w~~~-~~~~~~~~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 172 SDG-RVYVSSGDG-RVVAVDLATGE----KLWSKP-ISGIYSLPSVDGGTLYVTSS 220 (238)
T ss_dssp CTT-EEEEECCTS-SEEEEETTTTE----EEEEEC-SS-ECECEECCCTEEEEEET
T ss_pred ECC-EEEEEcCCC-eEEEEECCCCC----EEEEec-CCCccCCceeeCCEEEEEeC
Confidence 345 688887654 46667765432 123212 22233334456678999883
No 50
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.08 E-value=0.00038 Score=69.38 Aligned_cols=154 Identities=15% Similarity=0.152 Sum_probs=106.7
Q ss_pred ccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC
Q 018144 148 LRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 148 ~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
+..|.+|++|--+ ++|.||+-. ..=.+..+|.+ .+...+.++|..|.+|++++-+..|||+++
T Consensus 1067 L~SPEGiAVDh~~Rn~ywtDS~l---------------D~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDW 1130 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVL---------------DKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDW 1130 (1289)
T ss_pred CCCccceeeeeccceeeeecccc---------------chhheeecCCc-eeeEEEeecccCcceEEeecccCceeeccc
Confidence 5689999999766 799998751 01135666633 111224578999999999998878999998
Q ss_pred CC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC--EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccc
Q 018144 227 WK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 302 (360)
Q Consensus 227 ~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~--lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 302 (360)
.+ -+|-+.+++|+ +.+++....-++|+|+.+|+.-. -||-...
T Consensus 1131 nRenPkIets~mDG~---NrRilin~DigLPNGLtfdpfs~~LCWvDAGt------------------------------ 1177 (1289)
T KOG1214|consen 1131 NRENPKIETSSMDGE---NRRILINTDIGLPNGLTFDPFSKLLCWVDAGT------------------------------ 1177 (1289)
T ss_pred cccCCcceeeccCCc---cceEEeecccCCCCCceeCcccceeeEEecCC------------------------------
Confidence 65 36777888773 45677766678999999998775 5764332
Q ss_pred cCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 303 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 303 ~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
.++-.+.++|.--+.+.. + +..+-++..+++++|...+..|+|.-+.+
T Consensus 1178 -----~rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1178 -----KRLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred -----cceeEecCCCCcchhhhh--c--ccCceeeeeccccceeeccccCceEEeec
Confidence 356677777654333321 2 23445567777789999999999877654
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.07 E-value=0.0067 Score=53.49 Aligned_cols=209 Identities=18% Similarity=0.181 Sum_probs=119.9
Q ss_pred eEEEcCCC-CEEEEecCCeEEEEE-CC--eeeEE----------Ee-cCCeEEEEeC-CCcEEEEc-CCC--eEEEeecc
Q 018144 83 DASMDKNG-VIYTATRDGWIKRLQ-DG--TWVNW----------KF-IDSHLIICDN-ANGLHKVS-EDG--VENFLSYV 143 (360)
Q Consensus 83 ~i~~d~~G-~l~v~~~~G~I~~~~-~g--~~~~~----------~~-~~g~L~v~~~-~~gl~~~~-~~g--~~~l~~~~ 143 (360)
.+.+.+++ .+++++.+|.|..++ .. ....+ .. .++.++++.. .+.+..++ .++ ...+. ..
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~ 134 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GH 134 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cC
Confidence 66777776 677777888888887 32 11111 11 2345555554 44566666 444 22221 11
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEE
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVV 222 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~ 222 (360)
...+..+.+++++.+.++-. ..+.|..+|..+++....... ......++++++++.++
T Consensus 135 ----~~~i~~~~~~~~~~~l~~~~-----------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 135 ----TDWVNSVAFSPDGTFVASSS-----------------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL 193 (289)
T ss_pred ----CCcEEEEEEcCcCCEEEEEc-----------------CCCcEEEEEccccccceeEecCccccceEEECCCcCEEE
Confidence 12467888888887666422 246788888765554332222 23567899999998777
Q ss_pred EEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccc
Q 018144 223 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 302 (360)
Q Consensus 223 v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 302 (360)
++.. .+.|..|+....+ ....+. ........+.+++++.+.++...
T Consensus 194 ~~~~-~~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~------------------------------ 239 (289)
T cd00200 194 SSSS-DGTIKLWDLSTGK--CLGTLR-GHENGVNSVAFSPDGYLLASGSE------------------------------ 239 (289)
T ss_pred EecC-CCcEEEEECCCCc--eecchh-hcCCceEEEEEcCCCcEEEEEcC------------------------------
Confidence 7765 6778888875321 111121 12234567888888877777652
Q ss_pred cCCCceEEEEECCC-CcEEEEEeCCCCCcccceeeEEEEC--CEEEEEeCCCCeEEE
Q 018144 303 TLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD--NHLYVISLTSNFIGK 356 (360)
Q Consensus 303 ~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~--g~Lylgs~~~~~i~~ 356 (360)
.+.+..++.+ ++....+.... ..+..+.... ..|+.++. ...|..
T Consensus 240 ----~~~i~i~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-d~~i~i 287 (289)
T cd00200 240 ----DGTIRVWDLRTGECVQTLSGHT----NSVTSLAWSPDGKRLASGSA-DGTIRI 287 (289)
T ss_pred ----CCcEEEEEcCCceeEEEccccC----CcEEEEEECCCCCEEEEecC-CCeEEe
Confidence 2466667753 66666665322 2466666654 44555443 444544
No 52
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.04 E-value=0.0054 Score=60.94 Aligned_cols=171 Identities=16% Similarity=0.274 Sum_probs=101.6
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCe-eeEE----------Ee-cCCeEEEEeCCCc-EEEEc-CCC--eEE
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNW----------KF-IDSHLIICDNANG-LHKVS-EDG--VEN 138 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~-~~~~----------~~-~~g~L~v~~~~~g-l~~~~-~~g--~~~ 138 (360)
...-.++++.+||.+.++. .||+|-.++ .|. +..| .+ ..|+..++..-.| +-.+| ... +++
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 3445577888899776554 899998888 441 1111 11 1344444443444 44455 333 666
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc-ceEEEecC
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRD 217 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p-ngia~~~d 217 (360)
+..+.+ .....+++|+.|.|.++-+.. .=.|+.++.+||++.-+..+...| .+++++++
T Consensus 430 ft~P~p----~QfscvavD~sGelV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 430 FTSPEP----IQFSCVAVDPSGELVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred ecCCCc----eeeeEEEEcCCCCEEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 533221 235688999999988863321 125888999999887666665555 68999999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEEEEec
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 272 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~ 272 (360)
++ ++++.+....|.++++=.. .++.+.+. ...-.-++.+.++| .+-|++..
T Consensus 490 ~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 490 GS-LLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred cC-eEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEec
Confidence 98 5566666677777765322 22333332 11123355666666 46676655
No 53
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.04 E-value=0.00037 Score=66.13 Aligned_cols=150 Identities=18% Similarity=0.136 Sum_probs=88.6
Q ss_pred ccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE
Q 018144 152 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 230 (360)
Q Consensus 152 n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~ 230 (360)
..+.+.+||+ +|+++ ..|.|..+|..++++.........|.|+++++||+++|++....+.
T Consensus 40 ~~~~~s~Dgr~~yv~~------------------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVAN------------------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp EEEE-TT-SSEEEEEE------------------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTE
T ss_pred eEEEecCCCCEEEEEc------------------CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCc
Confidence 4567789995 88863 2478999999988876555555679999999999999999988889
Q ss_pred EEEEEecCCcCcceeeecc-CC-----CCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccC
Q 018144 231 CRKYWLKGERKGKLETFAE-NL-----PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 304 (360)
Q Consensus 231 i~~~~~~g~~~~~~~~~~~-~~-----~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 304 (360)
+..+|.+.- .....+.. .. ...+.+|...+....||.....
T Consensus 102 v~v~D~~tl--e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------------------------------- 148 (369)
T PF02239_consen 102 VSVIDAETL--EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD------------------------------- 148 (369)
T ss_dssp EEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-------------------------------
T ss_pred eeEeccccc--cceeecccccccccccCCCceeEEecCCCCEEEEEEcc-------------------------------
Confidence 999986432 22222211 01 1122355556666767755431
Q ss_pred CCceEEEEECC-CCc--EEEEEeCCCCCcccceeeEEEE-C-CEEEEEeCCCCeEEEEeC
Q 018144 305 GGGAHLIHVAE-DGT--IIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 305 ~~~~~v~~~~~-~g~--~~~~~~~~~g~~~~~~t~~~~~-~-g~Lylgs~~~~~i~~~~l 359 (360)
.+.|..+|. +.+ ....+.. |. ....+..+ + .+++++....|.|+++++
T Consensus 149 --~~~I~vVdy~d~~~~~~~~i~~--g~---~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 149 --TGEIWVVDYSDPKNLKVTTIKV--GR---FPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp --TTEEEEEETTTSSCEEEEEEE----T---TEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred --CCeEEEEEeccccccceeeecc--cc---cccccccCcccceeeecccccceeEEEee
Confidence 346777763 222 2223332 22 33444444 3 568888888999988875
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.03 E-value=0.008 Score=53.00 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=92.7
Q ss_pred CcceEEEcCCCC-EEEEecCCeEEEEE--CCee-e----------EEEe-cCC-eEEEEeCCCcEEEEc-CCC--eEEEe
Q 018144 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-V----------NWKF-IDS-HLIICDNANGLHKVS-EDG--VENFL 140 (360)
Q Consensus 80 ~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~-~----------~~~~-~~g-~L~v~~~~~gl~~~~-~~g--~~~l~ 140 (360)
.-.++.+.+++. |++++.+|.|..++ +++. . .+.. .++ .|+++...+.+..++ .++ ...+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe
Confidence 345667777654 45555788887776 3321 1 1111 223 455555455566666 443 33332
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecCCC
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~dg~ 219 (360)
.. . ..+..+.+.+++.+.++.. ..+.+..+|..+++...... .......+++++++.
T Consensus 91 ~~-~----~~i~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 91 GH-T----SYVSSVAFSPDGRILSSSS-----------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred cc-C----CcEEEEEEcCCCCEEEEec-----------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 11 1 2466778888887777532 25678889887665544333 223467899999887
Q ss_pred EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEe
Q 018144 220 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~ 271 (360)
.++.+. ..+.|..|++...+. ...+. ........+.++++|+ ++++..
T Consensus 149 ~l~~~~-~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 149 FVASSS-QDGTIKLWDLRTGKC--VATLT-GHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEEEc-CCCcEEEEEcccccc--ceeEe-cCccccceEEECCCcCEEEEecC
Confidence 554443 356788888753221 11221 2222456788888884 555543
No 55
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.02 E-value=0.0041 Score=59.07 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=78.5
Q ss_pred CCeEEEEeCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 116 DSHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 116 ~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
+..+||++.+..+..+| .++ +..+.. | ..+.++++++||+ +|+++. ..+.+..
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~---G---~~~~~i~~s~DG~~~~v~n~-----------------~~~~v~v 104 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKV---G---GNPRGIAVSPDGKYVYVANY-----------------EPGTVSV 104 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SEEEEEEE--TTTEEEEEEE-----------------ETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEec---C---CCcceEEEcCCCCEEEEEec-----------------CCCceeE
Confidence 34599998777788888 555 444422 2 3478999999995 777642 2467888
Q ss_pred EcCCCCeEEEEeCCC--------cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCC
Q 018144 192 YDPSSNITTLVADGF--------YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 263 (360)
Q Consensus 192 ~d~~tg~~~~~~~~l--------~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~ 263 (360)
+|.+|.+........ ....+|..++.+..++++-...++|+.++....+.-....+ ....+|.+..+|++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i--~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI--KVGRFPHDGGFDPD 182 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE--E--TTEEEEEE-TT
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee--cccccccccccCcc
Confidence 998877654432111 12357777888877777777778999998764321111111 12346889999999
Q ss_pred CCEEEE-Eec
Q 018144 264 GTFWIA-IIK 272 (360)
Q Consensus 264 G~lwva-~~~ 272 (360)
|+++++ ...
T Consensus 183 gry~~va~~~ 192 (369)
T PF02239_consen 183 GRYFLVAANG 192 (369)
T ss_dssp SSEEEEEEGG
T ss_pred cceeeecccc
Confidence 986554 443
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.94 E-value=0.0095 Score=52.44 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=99.1
Q ss_pred cCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 115 IDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 115 ~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
.++++|+++....++.++ .+| ...-... ++. +..+ . .-.++.+|+.. ..++|+.+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~-~~~~--~-~~~~~~v~v~~------------------~~~~l~~~ 91 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGP-ISGA--P-VVDGGRVYVGT------------------SDGSLYAL 91 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSC-GGSG--E-EEETTEEEEEE------------------TTSEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccc-ccce--e-eeccccccccc------------------ceeeeEec
Confidence 688999998888999999 688 3332222 221 1111 2 33567888853 24589999
Q ss_pred cCCCCeEEEEe-C-C---CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC-C--------Ccee
Q 018144 193 DPSSNITTLVA-D-G---FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG-A--------PDNI 258 (360)
Q Consensus 193 d~~tg~~~~~~-~-~---l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g-~--------pd~i 258 (360)
|..+|+..... . . ...........+++.+|+... .+.|+.++++..+.-...... ..++ . ....
T Consensus 92 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 92 DAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSP 169 (238)
T ss_dssp ETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEE
T ss_pred ccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccce
Confidence 98888876542 1 1 111112222223666887776 568999997633221111111 1010 0 0112
Q ss_pred EEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeE
Q 018144 259 NLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSG 337 (360)
Q Consensus 259 ~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~ 337 (360)
.++ +|.+|++... +.++.+|. .|+.+. ..+.+. .....
T Consensus 170 ~~~-~~~v~~~~~~-----------------------------------g~~~~~d~~tg~~~w--~~~~~~---~~~~~ 208 (238)
T PF13360_consen 170 VIS-DGRVYVSSGD-----------------------------------GRVVAVDLATGEKLW--SKPISG---IYSLP 208 (238)
T ss_dssp ECC-TTEEEEECCT-----------------------------------SSEEEEETTTTEEEE--EECSS----ECECE
T ss_pred EEE-CCEEEEEcCC-----------------------------------CeEEEEECCCCCEEE--EecCCC---ccCCc
Confidence 223 4588887765 33666674 566443 222211 12224
Q ss_pred EEECCEEEEEeCCCCeEEEEeCC
Q 018144 338 LQVDNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 338 ~~~~g~Lylgs~~~~~i~~~~l~ 360 (360)
...++.||+++ ....|..+++.
T Consensus 209 ~~~~~~l~~~~-~~~~l~~~d~~ 230 (238)
T PF13360_consen 209 SVDGGTLYVTS-SDGRLYALDLK 230 (238)
T ss_dssp ECCCTEEEEEE-TTTEEEEEETT
T ss_pred eeeCCEEEEEe-CCCEEEEEECC
Confidence 56679999999 78888888753
No 57
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.91 E-value=0.013 Score=55.97 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=102.5
Q ss_pred ceEEEcCCC-CEEEEecCCeEEEEE--CCe------------eeEEEecC-CeEEEEeCCCcEEEEc-C-CCeEEE-eec
Q 018144 82 EDASMDKNG-VIYTATRDGWIKRLQ--DGT------------WVNWKFID-SHLIICDNANGLHKVS-E-DGVENF-LSY 142 (360)
Q Consensus 82 e~i~~d~~G-~l~v~~~~G~I~~~~--~g~------------~~~~~~~~-g~L~v~~~~~gl~~~~-~-~g~~~l-~~~ 142 (360)
.++++.++| +||.++.+|.|..++ .|. +..+...+ +.|+.+.++.-+.+++ . ++++.- .-.
T Consensus 324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~ 403 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK 403 (603)
T ss_pred eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee
Confidence 345555544 688999999999988 331 22233334 7788888887777776 3 332211 111
Q ss_pred cCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEE
Q 018144 143 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 221 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l 221 (360)
.. ..|-++++.++|. +.++. ...|..+...++ +... .-...+.++|+++|++.+
T Consensus 404 lg----~QP~~lav~~d~~~avv~~-------------------~~~iv~l~~~~~-~~~~-~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 404 LG----SQPKGLAVLSDGGTAVVAC-------------------ISDIVLLQDQTK-VSSI-PIGYESSAVAVSPDGSEV 458 (603)
T ss_pred cC----CCceeEEEcCCCCEEEEEe-------------------cCcEEEEecCCc-ceee-ccccccceEEEcCCCCEE
Confidence 11 3577999998874 44432 234555543322 2222 233568899999999877
Q ss_pred EEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 222 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 222 ~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
-|... .++|..|.++|....+..... ...+-+..++..+||.+.++...
T Consensus 459 aVGG~-Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 459 AVGGQ-DGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred EEecc-cceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEecc
Confidence 66665 457999999886443322222 35567889999999988887665
No 58
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=0.0068 Score=54.21 Aligned_cols=178 Identities=15% Similarity=0.189 Sum_probs=99.1
Q ss_pred CCCcceEEEcCC-CCEEEEe-cCCeEEEEE-CCeee------------EEEecCCeEEEE-eCC-CcEEEEc--CCC-eE
Q 018144 78 VNHPEDASMDKN-GVIYTAT-RDGWIKRLQ-DGTWV------------NWKFIDSHLIIC-DNA-NGLHKVS--EDG-VE 137 (360)
Q Consensus 78 ~~~Pe~i~~d~~-G~l~v~~-~~G~I~~~~-~g~~~------------~~~~~~g~L~v~-~~~-~gl~~~~--~~g-~~ 137 (360)
...-.++.++++ ..||..+ ..-.|..++ +|++- .++..++..|+. +.. +.++.+. .+. +.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 345667788874 4566555 344677777 66532 222234444543 322 3455554 332 22
Q ss_pred EEee-----ccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-------
Q 018144 138 NFLS-----YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------- 204 (360)
Q Consensus 138 ~l~~-----~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~------- 204 (360)
.... ...........+++.|+.+ ++||+- |..+ -+|+.++........-..
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---------------Er~P-~~I~~~~~~~~~l~~~~~~~~~~~~ 228 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---------------ERNP-IGIFEVTQSPSSLSVHASLDPTADR 228 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEE---------------ccCC-cEEEEEecCCcccccccccCccccc
Confidence 2111 1111223456799999865 788852 2223 367777643222211100
Q ss_pred C--CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC------CCceeEEcCCCCEEEEEec
Q 018144 205 G--FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG------APDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 205 ~--l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g------~pd~i~~d~~G~lwva~~~ 272 (360)
+ +....|+.+++..+.|+|-+.-...|..++.+|...+.... .....| -+.||+.|.+|+|||....
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL-~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSL-TKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEe-ccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 0 22356888888766788877777889999988764322221 111112 3789999999999998765
No 59
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.82 E-value=0.012 Score=57.38 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=102.6
Q ss_pred EEEcCCCC-EEE-EecCC--eEEEEE--CCeeeEE------------EecCCeEEEEeCCC---cEEEEc-CCC-eEEEe
Q 018144 84 ASMDKNGV-IYT-ATRDG--WIKRLQ--DGTWVNW------------KFIDSHLIICDNAN---GLHKVS-EDG-VENFL 140 (360)
Q Consensus 84 i~~d~~G~-l~v-~~~~G--~I~~~~--~g~~~~~------------~~~~g~L~v~~~~~---gl~~~~-~~g-~~~l~ 140 (360)
..+.+||. |++ ...+| .|+.++ +|+.+.+ ...+..|+++.... .|+.++ .++ .+.+.
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt 302 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT 302 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc
Confidence 35667774 433 33333 588887 4443222 11233465543222 377777 555 55443
Q ss_pred eccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCC
Q 018144 141 SYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~ 219 (360)
... ......++++||. |+++-.. .....|+++|.++++.+.+........+.+++|||+
T Consensus 303 ~~~-----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~ 362 (448)
T PRK04792 303 RHR-----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGR 362 (448)
T ss_pred cCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCC
Confidence 211 1234567888885 5554211 112469999998888766543323334578999999
Q ss_pred EEEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCc
Q 018144 220 YVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPK 296 (360)
Q Consensus 220 ~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~ 296 (360)
.++++.... ..|+++++++.. .+.+... .......++++|. |+.+....
T Consensus 363 ~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~~--~~d~~ps~spdG~~I~~~~~~~----------------------- 414 (448)
T PRK04792 363 SMIMVNRTNGKFNIARQDLETGA---MQVLTST--RLDESPSVAPNGTMVIYSTTYQ----------------------- 414 (448)
T ss_pred EEEEEEecCCceEEEEEECCCCC---eEEccCC--CCCCCceECCCCCEEEEEEecC-----------------------
Confidence 888876533 367888876542 2222211 1112235778886 44433321
Q ss_pred cccccccCCCceEEEEECCCCcEEEEEeCCCC
Q 018144 297 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG 328 (360)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g 328 (360)
....++.++.+|+....+..+.|
T Consensus 415 ---------g~~~l~~~~~~G~~~~~l~~~~g 437 (448)
T PRK04792 415 ---------GKQVLAAVSIDGRFKARLPAGQG 437 (448)
T ss_pred ---------CceEEEEEECCCCceEECcCCCC
Confidence 12357778888887776655444
No 60
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.78 E-value=0.0079 Score=53.56 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=102.2
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE--eCCCcCcceEEEecCCCEEEEEeC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~--~~~l~~pngia~~~dg~~l~v~~t 226 (360)
.+..++.+..+|.+|-+... | ...+|.++|++||++... ...-.|..|+++..| .+|.-..
T Consensus 45 aFTQGL~~~~~g~LyESTG~--y-------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGL--Y-------------GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW 107 (264)
T ss_dssp -EEEEEEEEETTEEEEEECS--T-------------TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred ccCccEEecCCCEEEEeCCC--C-------------CcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence 35678888888999998654 1 234799999999987542 344568899999855 5999988
Q ss_pred CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 018144 227 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 306 (360)
Q Consensus 227 ~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 306 (360)
..+..++||.+. ......+. .++-.=|++.|.+ .||+++..
T Consensus 108 k~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg~-~Li~SDGS---------------------------------- 148 (264)
T PF05096_consen 108 KEGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDGK-RLIMSDGS---------------------------------- 148 (264)
T ss_dssp SSSEEEEEETTT--TEEEEEEE---SSS--EEEECSS-CEEEE-SS----------------------------------
T ss_pred cCCeEEEEcccc--ceEEEEEe--cCCcceEEEcCCC-EEEEECCc----------------------------------
Confidence 889999999753 22333332 2232346776643 79998875
Q ss_pred ceEEEEECCC-CcEEEEEeCC-CCCcccceeeEEEECCEEEEEeCCCCeEEEEeC
Q 018144 307 GAHLIHVAED-GTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 307 ~~~v~~~~~~-g~~~~~~~~~-~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~~~l 359 (360)
..+..+||+ -+....+... +|.+......+...+|.||.--+..++|.+++.
T Consensus 149 -~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 149 -SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp -SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred -cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 588899985 4555554432 456666777777789999999999999999974
No 61
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.02 Score=55.74 Aligned_cols=187 Identities=17% Similarity=0.223 Sum_probs=102.0
Q ss_pred EEcCCCC-EEEEe-cC--CeEEEEE--CCeeeEEE-----------ecCC-eEEEEeCCC---cEEEEc-CCC-eEEEee
Q 018144 85 SMDKNGV-IYTAT-RD--GWIKRLQ--DGTWVNWK-----------FIDS-HLIICDNAN---GLHKVS-EDG-VENFLS 141 (360)
Q Consensus 85 ~~d~~G~-l~v~~-~~--G~I~~~~--~g~~~~~~-----------~~~g-~L~v~~~~~---gl~~~~-~~g-~~~l~~ 141 (360)
++.++|. |++.+ .+ ..|++++ +|+.+.+. .++| .|++..... .|+.++ .++ .+.+..
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc
Confidence 4556664 44444 22 3588877 44432221 1233 454432222 477777 555 554422
Q ss_pred ccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCE
Q 018144 142 YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~ 220 (360)
. .+ .....++++||+ |+++... .....|+.+|.++++.+.+..........+++|||+.
T Consensus 290 ~-~~----~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 290 H-FG----IDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred C-CC----CccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCE
Confidence 1 11 123567888885 5554211 0123589999877777655433233446899999998
Q ss_pred EEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCE-EEEEecCchhHHHHhhcchhHHHHHHhCCcc
Q 018144 221 VVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLAAYPKL 297 (360)
Q Consensus 221 l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 297 (360)
++++...+ ..|+.+++++.. ...+... .......+.+||+. +.+...
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~~------------------------- 399 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATRE------------------------- 399 (433)
T ss_pred EEEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEec-------------------------
Confidence 88775432 368888876532 2233211 12234578889973 333322
Q ss_pred ccccccCCCceEEEEECCCCcEEEEEeCCCC
Q 018144 298 FSQFITLGGGAHLIHVAEDGTIIRNLVDPTG 328 (360)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g 328 (360)
.....|+.++.+|...+.+..+.|
T Consensus 400 -------~g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 400 -------GGRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred -------CCceEEEEEECCCCceEEcccCCC
Confidence 113578888988877766654444
No 62
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.029 Score=54.86 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=68.0
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.|+.++ .+| .+.+.. ..+ ......+++||+ |+++-.. .....|+.+|.++++.+.+.
T Consensus 243 ~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~---------------~g~~~Iy~~dl~tg~~~~lt 302 (448)
T PRK04792 243 EIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK---------------DGQPEIYVVDIATKALTRIT 302 (448)
T ss_pred EEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC---------------CCCeEEEEEECCCCCeEECc
Confidence 477777 556 544432 122 123567889996 7664211 11236999999888877665
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCE
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 266 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~l 266 (360)
.........++++||+.++++... ...|+++++++.+. +.+... ........+++||+.
T Consensus 303 ~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~-g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 303 RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFE-GEQNLGGSITPDGRS 363 (448)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecC-CCCCcCeeECCCCCE
Confidence 444445667899999988776542 34688888765332 222111 112233567888863
No 63
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.70 E-value=0.055 Score=52.63 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=68.0
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.++.++ .+| .+.+.. ..+ ......+.+||+ |.++-+. .....|+.+|.++++.+.+.
T Consensus 227 ~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt 286 (435)
T PRK05137 227 RVYLLDLETGQRELVGN-FPG----MTFAPRFSPDGRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLT 286 (435)
T ss_pred EEEEEECCCCcEEEeec-CCC----cccCcEECCCCCEEEEEEec---------------CCCceEEEEECCCCceEEcc
Confidence 577777 566 544432 222 233567889995 5554211 11346999999888877665
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCE
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 266 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~l 266 (360)
.........+++|||+.++++... ...|++++.++.... .+.. ..+......+.++|+.
T Consensus 287 ~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~---~lt~-~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 287 DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR---RISF-GGGRYSTPVWSPRGDL 347 (435)
T ss_pred CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE---Eeec-CCCcccCeEECCCCCE
Confidence 443345568899999977766532 347888888764322 2211 1222234567777753
No 64
>PRK13684 Ycf48-like protein; Provisional
Probab=97.67 E-value=0.051 Score=50.94 Aligned_cols=83 Identities=14% Similarity=0.238 Sum_probs=41.2
Q ss_pred ccEEEEEcCCCCeEEEEeCCC-cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 186 HGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l-~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
.|.|++=+......+.+..+. ...+++++.+++. +++... .+.+++-.-++.+ +.+...........++.+.++|
T Consensus 151 ~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~-~G~i~~s~~~gg~--tW~~~~~~~~~~l~~i~~~~~g 226 (334)
T PRK13684 151 VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSS-RGNFYSTWEPGQT--AWTPHQRNSSRRLQSMGFQPDG 226 (334)
T ss_pred cceEEEECCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeC-CceEEEEcCCCCC--eEEEeeCCCcccceeeeEcCCC
Confidence 356776554323444433322 2346788888875 333332 3456654222211 1222211111235567777888
Q ss_pred CEEEEEec
Q 018144 265 TFWIAIIK 272 (360)
Q Consensus 265 ~lwva~~~ 272 (360)
++|+....
T Consensus 227 ~~~~vg~~ 234 (334)
T PRK13684 227 NLWMLARG 234 (334)
T ss_pred CEEEEecC
Confidence 88886544
No 65
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.66 E-value=0.001 Score=65.68 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=49.1
Q ss_pred ccccccccEEEcCCCcEEEEeCCCCCCCc--c-----ceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcceEEEec
Q 018144 146 SKLRFANDVVEASDGSLYFTVSSSKYLPH--E-----YCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSR 216 (360)
Q Consensus 146 ~~~~~~n~l~~d~dG~l~vtd~~~~~~~~--~-----~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~ 216 (360)
..+..|+.|++|++|+|||.......... . ..+.+....... +...++.+++++.+... -....|++++|
T Consensus 433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp 511 (524)
T PF05787_consen 433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP 511 (524)
T ss_pred CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence 45778999999999999998754321110 0 000000001111 55567777888776543 34567999999
Q ss_pred CCCEEEEEe
Q 018144 217 DEDYVVVCE 225 (360)
Q Consensus 217 dg~~l~v~~ 225 (360)
|++.||+.-
T Consensus 512 Dg~tlFvni 520 (524)
T PF05787_consen 512 DGRTLFVNI 520 (524)
T ss_pred CCCEEEEEE
Confidence 999998863
No 66
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.64 E-value=0.044 Score=53.14 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=85.7
Q ss_pred eEEEcCCCC-E-EEEecC--CeEEEEE--CCeeeEE------------EecCCeEEEEeCCC---cEEEEc-CCC-eEEE
Q 018144 83 DASMDKNGV-I-YTATRD--GWIKRLQ--DGTWVNW------------KFIDSHLIICDNAN---GLHKVS-EDG-VENF 139 (360)
Q Consensus 83 ~i~~d~~G~-l-~v~~~~--G~I~~~~--~g~~~~~------------~~~~g~L~v~~~~~---gl~~~~-~~g-~~~l 139 (360)
+..+.+||. | |+...+ ..|+.++ +|+.+.+ ...+..|++..... .|+.++ .++ .+.+
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 282 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV 282 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc
Confidence 346666764 4 444333 3578777 4533222 11233454433222 477777 555 5544
Q ss_pred eeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg 218 (360)
... .+ ......+++||. |+++... .....|+.+|..+++.+.+..........+++|||
T Consensus 283 t~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 283 TNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADG 342 (430)
T ss_pred ccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 321 11 123456778884 6664211 11236999998878776654332233456799999
Q ss_pred CEEEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 219 DYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 219 ~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
+.++++.... ..|+.+++++.. .+.+... .......++++|...+
T Consensus 343 ~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 343 KTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTMLI 389 (430)
T ss_pred CEEEEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEEE
Confidence 9888876533 357888876532 2333221 1223446788886433
No 67
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.60 E-value=0.08 Score=51.42 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=68.8
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.++.++ .+| .+.+.. ..+ ....+.+++||+ |+++... .....|+.+|.++++.+.+.
T Consensus 224 ~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPDG~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt 283 (429)
T PRK03629 224 ALVIQTLANGAVRQVAS-FPR----HNGAPAFSPDGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVT 283 (429)
T ss_pred EEEEEECCCCCeEEccC-CCC----CcCCeEECCCCCEEEEEEcC---------------CCCcEEEEEECCCCCEEEcc
Confidence 466666 555 444432 111 133578999995 6664221 11235999999888887765
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
.........+++|||+.++++... ...|+++++++... +.+.. ..+......+.+||+..+
T Consensus 284 ~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~---~~lt~-~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 284 DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP---QRITW-EGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe---EEeec-CCCCccCEEECCCCCEEE
Confidence 544455678999999977555432 24788888765432 22211 112234566788886433
No 68
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.60 E-value=0.019 Score=54.52 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=78.3
Q ss_pred EcCCCCEEEEecCCeEEEEE--CCeee----E----------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCcc
Q 018144 86 MDKNGVIYTATRDGWIKRLQ--DGTWV----N----------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSK 147 (360)
Q Consensus 86 ~d~~G~l~v~~~~G~I~~~~--~g~~~----~----------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~ 147 (360)
.+.+|.+|+++.+|.|+.++ +|+.. . ....+|+||+++...-++.+| .+| ...... ..+.
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~-~~~~- 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRN-VGGS- 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEe-cCCC-
Confidence 56689999999999999998 45421 0 012368899998766688999 488 443322 1221
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-----CCcCcceEEEecCCCEEE
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFANGVALSRDEDYVV 222 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-----~l~~pngia~~~dg~~l~ 222 (360)
...... .+-.+|.+|+.. ..+.++.+|.++|+.....+ .+....... ..++ .+|
T Consensus 143 ~~~~~~-~v~~~~~v~~~s------------------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~-~vy 201 (370)
T COG1520 143 PYYASP-PVVGDGTVYVGT------------------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASG-TVY 201 (370)
T ss_pred eEEecC-cEEcCcEEEEec------------------CCCeEEEEEccCCcEEEEEecCCccccccccCce-eecc-eEE
Confidence 111222 344678899852 24689999999887754311 112222222 3344 477
Q ss_pred EEeCC-CCEEEEEEec
Q 018144 223 VCESW-KFRCRKYWLK 237 (360)
Q Consensus 223 v~~t~-~~~i~~~~~~ 237 (360)
+.... ...++.+++.
T Consensus 202 ~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 202 VGSDGYDGILYALNAE 217 (370)
T ss_pred EecCCCcceEEEEEcc
Confidence 77653 3478888884
No 69
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.54 E-value=0.00018 Score=40.95 Aligned_cols=28 Identities=29% Similarity=0.594 Sum_probs=24.7
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEE
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKY 234 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~ 234 (360)
+..|.|++++++|+ +||+|+.+++|.+|
T Consensus 1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 45799999998885 99999999999876
No 70
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.51 E-value=0.018 Score=57.32 Aligned_cols=86 Identities=14% Similarity=0.058 Sum_probs=61.3
Q ss_pred cEEEEEcCCC-----CeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCc------Ccce-eeeccCCCC-
Q 018144 187 GQLLKYDPSS-----NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER------KGKL-ETFAENLPG- 253 (360)
Q Consensus 187 g~l~~~d~~t-----g~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~------~~~~-~~~~~~~~g- 253 (360)
++|..+|..+ .++......-..|.|++++|||+++|++....+.+..+|....+ +.-. .+..+..-|
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4688888876 34555555667899999999999999999988999999975321 1101 112221112
Q ss_pred CCceeEEcCCCCEEEEEec
Q 018144 254 APDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 254 ~pd~i~~d~~G~lwva~~~ 272 (360)
.|-...+|.+|+.|++++-
T Consensus 376 GPLHTaFDg~G~aytslf~ 394 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFL 394 (635)
T ss_pred CcceEEECCCCCEEEeEee
Confidence 4778899999999999874
No 71
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.50 E-value=0.09 Score=51.02 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=71.7
Q ss_pred cEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC--C
Q 018144 153 DVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--F 229 (360)
Q Consensus 153 ~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~--~ 229 (360)
...+++||+ |+++... ...-.|+.++.++++.+.+..........+++|||+.++++...+ .
T Consensus 288 ~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred CeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence 456888885 5553211 012368888877676655432222334578999999887665433 3
Q ss_pred EEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCce
Q 018144 230 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 308 (360)
Q Consensus 230 ~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 308 (360)
.|+.+++++.. ...+... .......+.+||+ |+.+.... ...
T Consensus 353 ~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~~--------------------------------g~~ 395 (427)
T PRK02889 353 KLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQG--------------------------------GRS 395 (427)
T ss_pred EEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEecC--------------------------------CCE
Confidence 68888876532 2222211 1234567888886 33333321 124
Q ss_pred EEEEECCCCcEEEEEeCCCC
Q 018144 309 HLIHVAEDGTIIRNLVDPTG 328 (360)
Q Consensus 309 ~v~~~~~~g~~~~~~~~~~g 328 (360)
.++.++.+|+....+..+.|
T Consensus 396 ~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 396 VLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred EEEEEECCCCceEEeecCCC
Confidence 67778888887776655555
No 72
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.48 E-value=0.057 Score=52.56 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=56.8
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 227 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~-- 227 (360)
.....+.+||+ |.++... .....|+.+|..+++.+.+...-......+++|||+.++++...
T Consensus 204 v~~p~wSpDG~~lay~s~~---------------~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYA---------------NGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred eEeeEECCCCCEEEEEEec---------------CCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC
Confidence 44567889995 4443211 12357999999888776554322233567899999987666432
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 265 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~ 265 (360)
...|+.+++++... ..+. ..++......+++||+
T Consensus 269 ~~~Iy~~d~~~~~~---~~Lt-~~~~~~~~~~~spDG~ 302 (435)
T PRK05137 269 NTDIYTMDLRSGTT---TRLT-DSPAIDTSPSYSPDGS 302 (435)
T ss_pred CceEEEEECCCCce---EEcc-CCCCccCceeEcCCCC
Confidence 34688888865432 2222 1222333456677775
No 73
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.47 E-value=0.048 Score=53.93 Aligned_cols=127 Identities=11% Similarity=0.025 Sum_probs=69.6
Q ss_pred CCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEe-----------------CCCCEEEEEEecCCcCcceee
Q 018144 184 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE-----------------SWKFRCRKYWLKGERKGKLET 246 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~-----------------t~~~~i~~~~~~g~~~~~~~~ 246 (360)
...|.++.+|..+|+........ -.+++.++ +.+|+.. ...++|+.+|.+..+.-....
T Consensus 308 ~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 308 PKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred CCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 34678999999999875432111 12344444 3466642 124578888875332111111
Q ss_pred eccCC----CCCC--ceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcE
Q 018144 247 FAENL----PGAP--DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTI 319 (360)
Q Consensus 247 ~~~~~----~g~p--d~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~ 319 (360)
..... .+.| .+-..-.++.+|++... +.|+.+|. +|++
T Consensus 384 ~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~d-----------------------------------G~l~ald~~tG~~ 428 (488)
T cd00216 384 EGTIRDSWNIGFPHWGGSLATAGNLVFAGAAD-----------------------------------GYFRAFDATTGKE 428 (488)
T ss_pred CCccccccccCCcccCcceEecCCeEEEECCC-----------------------------------CeEEEEECCCCce
Confidence 11000 0011 11122334678888754 68999995 7999
Q ss_pred EEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 320 IRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 320 ~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
+..++.+.+.. ..+ .+...+|++|+++..+
T Consensus 429 lW~~~~~~~~~-a~P-~~~~~~g~~yv~~~~g 458 (488)
T cd00216 429 LWKFRTPSGIQ-ATP-MTYEVNGKQYVGVMVG 458 (488)
T ss_pred eeEEECCCCce-EcC-EEEEeCCEEEEEEEec
Confidence 98887755431 111 1234578999998765
No 74
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.47 E-value=0.1 Score=50.75 Aligned_cols=126 Identities=16% Similarity=0.151 Sum_probs=71.9
Q ss_pred CeEEEEeCCC---cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEE
Q 018144 117 SHLIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLL 190 (360)
Q Consensus 117 g~L~v~~~~~---gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~ 190 (360)
..|+.+.... .++.++ .+| .+.+.. ..+ ......+++||. |+++-+. .....|+
T Consensus 216 ~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpDG~~l~~~~s~---------------~g~~~Iy 275 (433)
T PRK04922 216 KKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPDGRRLALTLSR---------------DGNPEIY 275 (433)
T ss_pred CEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCCCCEEEEEEeC---------------CCCceEE
Confidence 3455444332 377777 566 544432 222 123568899995 6664221 1124699
Q ss_pred EEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCE
Q 018144 191 KYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 266 (360)
Q Consensus 191 ~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~l 266 (360)
.+|.++++.+.+..........++++||+.++++... ...|+.++.++.+. +.+. ..........+.++|+.
T Consensus 276 ~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt-~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 276 VMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT-FQGNYNARASVSPDGKK 349 (433)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee-cCCCCccCEEECCCCCE
Confidence 9999888877654433334567899999977766532 23588888765322 2221 11123345677888863
No 75
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.46 E-value=0.1 Score=50.42 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=71.9
Q ss_pred EEEEeCC---CcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 119 LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 119 L~v~~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
+|+.... ..|+.++ .+| .+.+.. ..+. .....+.+|| .|.++-+. .....|+.+
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~----~~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~ 262 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM----LVVSDVSKDGSKLLLTMAP---------------KGQPDIYLY 262 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCcEEEEec-CCCc----EEeeEECCCCCEEEEEEcc---------------CCCcEEEEE
Confidence 6654433 2488888 677 666543 2221 1123578898 46665321 123579999
Q ss_pred cCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 193 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 193 d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
|.++++.+.+...-..-....++|||+.++++... ...|+++++++.... .+... +. .+..++++|...+
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~---rlt~~--g~-~~~~~SPDG~~Ia 334 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE---QVVFH--GK-NNSSVSTYKNYIV 334 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE---eCccC--CC-cCceECCCCCEEE
Confidence 98888777654332222345799999888877643 237999998764322 11111 11 1347788887444
No 76
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.44 E-value=0.15 Score=50.52 Aligned_cols=236 Identities=11% Similarity=0.057 Sum_probs=114.4
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeE-------------E----EecCCeEEEEeC---------CCcEEEEc-CCC-eEE
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVN-------------W----KFIDSHLIICDN---------ANGLHKVS-EDG-VEN 138 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~-------------~----~~~~g~L~v~~~---------~~gl~~~~-~~g-~~~ 138 (360)
++.+|+++.+|.|+.+| +|+..- + ...++.+|+++. ...++.+| .+| ...
T Consensus 110 ~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 110 PRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 38999999999999999 674320 0 112456777653 24578899 778 333
Q ss_pred EeeccCCcc--cc---------------ccccEEEcC-CCcEEEEeCCCCCCCccceec--ccccCCccEEEEEcCCCCe
Q 018144 139 FLSYVNGSK--LR---------------FANDVVEAS-DGSLYFTVSSSKYLPHEYCLD--ILEGKPHGQLLKYDPSSNI 198 (360)
Q Consensus 139 l~~~~~~~~--~~---------------~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~--~~~~~~~g~l~~~d~~tg~ 198 (360)
-........ .. .-...++|+ .|.+|+........ .+... .......+.|+.+|.+||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~--~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPW--NWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCC--ccCCccCCCCCCceeeEEEEcCCCCC
Confidence 221111000 00 001345664 56899975431000 00000 0001123589999999998
Q ss_pred EEEEeCCC-------cCcceEEEe----cCCC---EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 199 TTLVADGF-------YFANGVALS----RDED---YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 199 ~~~~~~~l-------~~pngia~~----~dg~---~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
........ ..+....+. -+|+ .+|+.. ..++++.++.+..+. .+..... -.++..++ +
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~----~W~~~~~--~~~~~~~~-~ 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKL----ISARPEV--EQPMAYDP-G 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcE----eeEeEee--ccccccCC-c
Confidence 76543211 111111221 2333 355544 457899999854322 1111110 11234444 6
Q ss_pred CEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCC------cccceeeE
Q 018144 265 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ------LMSFVTSG 337 (360)
Q Consensus 265 ~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~------~~~~~t~~ 337 (360)
.+|++....... ++............+.|..+|. +|+++......... .....+.+
T Consensus 340 ~vyv~~~~~~~~-----------------~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~ 402 (488)
T cd00216 340 LVYLGAFHIPLG-----------------LPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSL 402 (488)
T ss_pred eEEEcccccccc-----------------CcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcce
Confidence 788865321000 0000000001223578999995 79988776554110 00112334
Q ss_pred EEECCEEEEEeCCC
Q 018144 338 LQVDNHLYVISLTS 351 (360)
Q Consensus 338 ~~~~g~Lylgs~~~ 351 (360)
...++.||+++..+
T Consensus 403 ~~~g~~v~~g~~dG 416 (488)
T cd00216 403 ATAGNLVFAGAADG 416 (488)
T ss_pred EecCCeEEEECCCC
Confidence 55667888887533
No 77
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.43 E-value=0.0015 Score=63.21 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=78.1
Q ss_pred ccceEecCCCCCCcceEEEcC-CCCEEEEecCCe-EEEEE---------CCeeeEEEecCCeEEEEeCC-CcEEEEcCCC
Q 018144 68 QDFIKVGEGSVNHPEDASMDK-NGVIYTATRDGW-IKRLQ---------DGTWVNWKFIDSHLIICDNA-NGLHKVSEDG 135 (360)
Q Consensus 68 ~~~~~~~~~~~~~Pe~i~~d~-~G~l~v~~~~G~-I~~~~---------~g~~~~~~~~~g~L~v~~~~-~gl~~~~~~g 135 (360)
..+..++.-++.+||.|++.+ .|.+|+...+++ --. + -|.+..|....+. .-++.. =-++....+.
T Consensus 406 ~AA~~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~-~~aNpr~~n~~G~I~r~~p~~~d-~t~~~ftWdlF~~aG~~ 483 (616)
T COG3211 406 LAADKLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSD-DAANPRAKNGYGQIVRWIPATGD-HTDTKFTWDLFVEAGNP 483 (616)
T ss_pred HHHHHhCCccccCccceeecCCcceEEEEeCCCCcccc-ccCCCcccccccceEEEecCCCC-ccCccceeeeeeecCCc
Confidence 445667777899999999997 678999874332 100 0 0111111111110 000000 0011111000
Q ss_pred --eEE-EeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcc
Q 018144 136 --VEN-FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFAN 210 (360)
Q Consensus 136 --~~~-l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pn 210 (360)
.+. ........-+..|++|++|+.|+|||....+.-..++.. .+ ...+..=++++++++.+..+ -+.-.
T Consensus 484 ~~~~~~~~~~~~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~----~G--~~~m~~~~p~~g~~~rf~t~P~g~E~t 557 (616)
T COG3211 484 SVLEGGASANINANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRF----RG--VTQMLTPDPKTGTIKRFLTGPIGCEFT 557 (616)
T ss_pred cccccccccCcccccccCCCceEECCCCCEEEEecCCCCccCccc----cc--ccccccCCCccceeeeeccCCCcceee
Confidence 000 001111233678999999999999997654211111100 01 11344445677777766543 23567
Q ss_pred eEEEecCCCEEEEEeC
Q 018144 211 GVALSRDEDYVVVCES 226 (360)
Q Consensus 211 gia~~~dg~~l~v~~t 226 (360)
|.+++||++.+||.-.
T Consensus 558 G~~FspD~~TlFV~vQ 573 (616)
T COG3211 558 GPCFSPDGKTLFVNVQ 573 (616)
T ss_pred cceeCCCCceEEEEec
Confidence 9999999999998854
No 78
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.42 E-value=0.0046 Score=59.96 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=18.1
Q ss_pred CCceeEEcCCCCEEEEEecC
Q 018144 254 APDNINLAPDGTFWIAIIKL 273 (360)
Q Consensus 254 ~pd~i~~d~~G~lwva~~~~ 273 (360)
.||||++|+.|+|||.+-+.
T Consensus 501 ~PDnl~fD~~GrLWi~TDg~ 520 (616)
T COG3211 501 SPDNLAFDPWGRLWIQTDGS 520 (616)
T ss_pred CCCceEECCCCCEEEEecCC
Confidence 59999999999999998763
No 79
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.40 E-value=0.14 Score=49.76 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=88.6
Q ss_pred eEEEcCCCC-E-EEEec--CCeEEEEE--CCeeeEEE-----------ecCC-eEEEEeCCC---cEEEEc-CCC-eEEE
Q 018144 83 DASMDKNGV-I-YTATR--DGWIKRLQ--DGTWVNWK-----------FIDS-HLIICDNAN---GLHKVS-EDG-VENF 139 (360)
Q Consensus 83 ~i~~d~~G~-l-~v~~~--~G~I~~~~--~g~~~~~~-----------~~~g-~L~v~~~~~---gl~~~~-~~g-~~~l 139 (360)
+.++.+||. | |+... +..|+.++ +|+.+.+. .++| .|++..... .|+.++ +++ .+.+
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l 282 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV 282 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc
Confidence 446777774 3 33322 23577777 44333221 1233 455543222 477778 566 5555
Q ss_pred eeccCCccccccccEEEcCCCc-EEEE-eCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecC
Q 018144 140 LSYVNGSKLRFANDVVEASDGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 217 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~-l~vt-d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~d 217 (360)
.... .......+.+||+ |+++ |.. ..-.|+.+|.++++.+.+..........+++||
T Consensus 283 t~~~-----~~~~~~~wSPDG~~I~f~s~~~----------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 283 TDGR-----SNNTEPTWFPDSQNLAYTSDQA----------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred cCCC-----CCcCceEECCCCCEEEEEeCCC----------------CCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 3221 1234668889996 5443 211 123689999887777665433334456889999
Q ss_pred CCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 218 EDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 218 g~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
|+.++++... ...|+.+++++.. .+.+... ..-.+..+.+||...+.
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC---eEEeCCC--CCCCCceECCCCCEEEE
Confidence 9988776543 2457788876532 2333221 11224567888974443
No 80
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.40 E-value=0.0071 Score=52.33 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=52.3
Q ss_pred CeEEEEeCCC-cE--EEEc-CCC-e---EEEeeccC--CccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCc
Q 018144 117 SHLIICDNAN-GL--HKVS-EDG-V---ENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 186 (360)
Q Consensus 117 g~L~v~~~~~-gl--~~~~-~~g-~---~~l~~~~~--~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~ 186 (360)
..+|+.|..+ -+ +.+| ++| + +.+.+.-. ...-..|+++++|.+|+|||+.-+ .
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g 232 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------G 232 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------C
Confidence 3467666543 45 4445 566 2 22322111 111247999999999999998533 5
Q ss_pred cEEEEEcCCCCeEEEE-eCCCcCcceEEEecC-CCEEEEEe
Q 018144 187 GQLLKYDPSSNITTLV-ADGFYFANGVALSRD-EDYVVVCE 225 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~-~~~l~~pngia~~~d-g~~l~v~~ 225 (360)
++|+++||.||+.-.. .-........|+.-. =+.+|++.
T Consensus 233 ~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 233 GTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred cEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 7899999999976432 112223344555322 23455553
No 81
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.37 E-value=0.012 Score=58.43 Aligned_cols=153 Identities=21% Similarity=0.311 Sum_probs=86.5
Q ss_pred CCCCCCcceEEE---cC-CCCEEEEe--cCCeEEEEE-CCeeeE-------EEecCCeEEEEeCCC-c-EEEEc---CCC
Q 018144 75 EGSVNHPEDASM---DK-NGVIYTAT--RDGWIKRLQ-DGTWVN-------WKFIDSHLIICDNAN-G-LHKVS---EDG 135 (360)
Q Consensus 75 ~~~~~~Pe~i~~---d~-~G~l~v~~--~~G~I~~~~-~g~~~~-------~~~~~g~L~v~~~~~-g-l~~~~---~~g 135 (360)
.|+ ..=|.+++ ++ ...+|+++ .++.|||+- +..... -...+|+||++.... + +-.+. .++
T Consensus 241 lGR-f~HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~~~~~~~~~~~~~~ll~~GtLyaak~~~~g~~~Wv~L~~~~~ 319 (524)
T PF05787_consen 241 LGR-FAHEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSDKPWDPGDRAANRDLLDEGTLYAAKFNQDGTGEWVPLGHGQG 319 (524)
T ss_pred ccc-ccccceeEEeecCCeEEEEEEecCCCCeEEEEecCCCCCCcccchhhhhhhCCEeceEEECCCCcEEEEECCCccc
Confidence 344 35566777 54 45789998 467899996 433210 113478999987552 2 22222 111
Q ss_pred -eE---------------EEe-eccCCccccccccEEEcC-CCcEEEEeCCCC-CCCcccee-cccccCCccEEEEEcCC
Q 018144 136 -VE---------------NFL-SYVNGSKLRFANDVVEAS-DGSLYFTVSSSK-YLPHEYCL-DILEGKPHGQLLKYDPS 195 (360)
Q Consensus 136 -~~---------------~l~-~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~-~~~~~~~~-~~~~~~~~g~l~~~d~~ 195 (360)
++ ..+ .......+..|.++.+++ +|.+||+-+... ........ ........|.|+++++.
T Consensus 320 ~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~ 399 (524)
T PF05787_consen 320 GLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPD 399 (524)
T ss_pred ccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEeccc
Confidence 10 011 111224678899999987 479999976532 10000000 01123346899999987
Q ss_pred CC-------eEEEEeC------------------CCcCcceEEEecCCCEEEEEeCCCC
Q 018144 196 SN-------ITTLVAD------------------GFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 196 tg-------~~~~~~~------------------~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
.+ +++.+.. .+..|-.|+++++|+ ||+++-...
T Consensus 400 ~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~ 457 (524)
T PF05787_consen 400 GNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGG 457 (524)
T ss_pred CCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEeCCCC
Confidence 55 3333221 255788999999998 777765443
No 82
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.031 Score=47.61 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=31.6
Q ss_pred ccEEEEEcCCCCeEEEEeC-------------CCcCcceEEEecCCCEEEEEeC
Q 018144 186 HGQLLKYDPSSNITTLVAD-------------GFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~-------------~l~~pngia~~~dg~~l~v~~t 226 (360)
+.+|.|++|++|++....+ ....+||||.+++++.+|++.-
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 3579999999999876432 1236799999999988988854
No 83
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.31 E-value=0.025 Score=53.22 Aligned_cols=135 Identities=15% Similarity=0.178 Sum_probs=70.8
Q ss_pred CCCCEEEEe-cCCeEEEEE-CCeeeEEEe--------------cCCe---EEEEeCC----C--cEEEEc-CCC-eEEEe
Q 018144 88 KNGVIYTAT-RDGWIKRLQ-DGTWVNWKF--------------IDSH---LIICDNA----N--GLHKVS-EDG-VENFL 140 (360)
Q Consensus 88 ~~G~l~v~~-~~G~I~~~~-~g~~~~~~~--------------~~g~---L~v~~~~----~--gl~~~~-~~g-~~~l~ 140 (360)
+...+++++ .+++++.|+ +|+...... -+|+ |.+++.. + .+++++ .++ ++.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 355677777 778899999 775332110 0222 4444322 2 366677 466 65553
Q ss_pred eccC--CccccccccEEEc---CCCcEEEEeCCCCCCCccceecccccCCccEE--EEEc-CCCCeEEE----EeCCCcC
Q 018144 141 SYVN--GSKLRFANDVVEA---SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL--LKYD-PSSNITTL----VADGFYF 208 (360)
Q Consensus 141 ~~~~--~~~~~~~n~l~~d---~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l--~~~d-~~tg~~~~----~~~~l~~ 208 (360)
.... ...+..++++|.- .+|.+|+--. ...|.+ |++. ...|.+.- -......
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~----------------~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ 209 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVN----------------GKDGRVEQYELTDDGDGKVSATLVREFKVGSQ 209 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEE----------------ETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEe----------------cCCceEEEEEEEeCCCCcEeeEEEEEecCCCc
Confidence 2110 1123457788874 3577776321 123433 3332 23343211 1123457
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
+.|++.|.....||++|-. ..|++|+.+..
T Consensus 210 ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~ 239 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEED-VGIWRYDAEPE 239 (381)
T ss_dssp EEEEEEETTTTEEEEEETT-TEEEEEESSCC
T ss_pred ceEEEEecccCCEEEecCc-cEEEEEecCCC
Confidence 8999999988899999985 68999998743
No 84
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.30 E-value=0.14 Score=49.61 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=57.7
Q ss_pred ccEEEcCCCc-EEE-EeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--
Q 018144 152 NDVVEASDGS-LYF-TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 227 (360)
Q Consensus 152 n~l~~d~dG~-l~v-td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~-- 227 (360)
....+++||+ |.+ ++.. ....|+.+|.++++.+.+...-......+++|||+.++++...
T Consensus 202 ~~p~wSpDG~~la~~s~~~----------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQ----------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred eeeeECCCCCEEEEEEcCC----------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 4557888985 544 3211 1246999999888776654322233458899999988765432
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEE
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIA 269 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva 269 (360)
...|+++++++... +.+. ...+......+++||. |++.
T Consensus 266 ~~~Iy~~d~~~~~~---~~lt-~~~~~~~~~~~spDg~~i~f~ 304 (430)
T PRK00178 266 NPEIYVMDLASRQL---SRVT-NHPAIDTEPFWGKDGRTLYFT 304 (430)
T ss_pred CceEEEEECCCCCe---EEcc-cCCCCcCCeEECCCCCEEEEE
Confidence 34799999875432 2222 1222333456677775 4444
No 85
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.059 Score=50.87 Aligned_cols=252 Identities=13% Similarity=0.089 Sum_probs=126.2
Q ss_pred ceEEEcCCCCE-EEEecCCeEEEEE-CCee----eEEE-----------ecCC--eEEEEeCCCcEEEEc-CCC-eEEEe
Q 018144 82 EDASMDKNGVI-YTATRDGWIKRLQ-DGTW----VNWK-----------FIDS--HLIICDNANGLHKVS-EDG-VENFL 140 (360)
Q Consensus 82 e~i~~d~~G~l-~v~~~~G~I~~~~-~g~~----~~~~-----------~~~g--~L~v~~~~~gl~~~~-~~g-~~~l~ 140 (360)
.+|-+.+.-.| .++.-+|.+..+. +|+. +.+. .+.| +++.+....=++.+| .++ ++.+.
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 45666665444 4555666544444 5532 2211 1234 355544444466677 666 55543
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCE
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~ 220 (360)
.. .+....+..-..+.+++++.... + ..|.|+.+...|+++..-..--....+++|+.|++.
T Consensus 297 ~~-~g~e~~~~e~FeVShd~~fia~~----------------G-~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 297 PP-YGVEEKSMERFEVSHDSNFIAIA----------------G-NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKE 358 (514)
T ss_pred CC-CCcccchhheeEecCCCCeEEEc----------------c-cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcE
Confidence 22 22222355667788888754432 1 256788887777665322222234567899999998
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCc--------hhHHHHhhcchh-HHHHH
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLD--------ARRMKILNSSKL-IKHVL 291 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~--------~~~~~~~~~~~~-~r~~~ 291 (360)
||++... +.|+.+++... .-...|.+...-.-..++...+|. |+|+...+ +.+ +....|. ++.++
T Consensus 359 l~~~~~~-GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~--~~s~~PkPik~~d 432 (514)
T KOG2055|consen 359 LLASGGT-GEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSC--FASTNPKPIKTVD 432 (514)
T ss_pred EEEEcCC-ceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchh--hccCCCCchhhhh
Confidence 8877654 58999998643 223344433222234466667776 55543321 111 1222222 22221
Q ss_pred ---HhCCcc-------ccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEE--CCEEEEEeCCCCeEEEEe
Q 018144 292 ---AAYPKL-------FSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 292 ---~~~~~~-------~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~ 358 (360)
..+-.+ +--+-.......+-.+. |.-.++.+|..+. ..+..++++.+. +|.|-+|+-.+ ++..++
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n-~~vg~vtc~aFSP~sG~lAvGNe~g-rv~l~k 510 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN-TKVGHVTCMAFSPNSGYLAVGNEAG-RVHLFK 510 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC-CcccceEEEEecCCCceEEeecCCC-ceeeEe
Confidence 111000 00000011112222222 3444555555553 447888999886 48888887643 444444
Q ss_pred C
Q 018144 359 L 359 (360)
Q Consensus 359 l 359 (360)
|
T Consensus 511 L 511 (514)
T KOG2055|consen 511 L 511 (514)
T ss_pred e
Confidence 3
No 86
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.28 Score=50.28 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=79.5
Q ss_pred CCcceEEEcCCCCEEEEe-cCCeEEEEE---C-CeeeE----------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEee
Q 018144 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ---D-GTWVN----------WKFIDSHLIICDNANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~-~~G~I~~~~---~-g~~~~----------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~ 141 (360)
.|=..|++|++|...+.+ .+|.|.+++ + ...+. +....+++..++..+-+.++. +.+ ...+..
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~ 93 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA 93 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceee
Confidence 455678999988654444 788888887 2 12222 222334455555444444444 333 221111
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc-ceEEEecCCCE
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDY 220 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p-ngia~~~dg~~ 220 (360)
.+. ..+++++++.+|+..+.- ...-.|-.++..+...+....+...| -++.++|++++
T Consensus 94 Rft----lp~r~~~v~g~g~~iaag-----------------sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 94 RFT----LPIRDLAVSGSGKMIAAG-----------------SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF 152 (933)
T ss_pred eee----ccceEEEEecCCcEEEee-----------------cCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence 111 125788999999866532 22234555665544444444555444 48899999986
Q ss_pred EEEEeCCCCEEEEEEecCC
Q 018144 221 VVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~ 239 (360)
|-++. .++.|..|+++..
T Consensus 153 LAvss-~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 153 LAVSS-CDGKVQIWDLQDG 170 (933)
T ss_pred EEEEe-cCceEEEEEcccc
Confidence 65555 4678999998643
No 87
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.25 E-value=0.21 Score=48.31 Aligned_cols=186 Identities=11% Similarity=0.057 Sum_probs=104.5
Q ss_pred EEcCCCC--EEEEe-c--CCeEEEEE--CCeeeEEEe-----------cCC-eEEEEeCC---CcEEEEc-CCC-eEEEe
Q 018144 85 SMDKNGV--IYTAT-R--DGWIKRLQ--DGTWVNWKF-----------IDS-HLIICDNA---NGLHKVS-EDG-VENFL 140 (360)
Q Consensus 85 ~~d~~G~--l~v~~-~--~G~I~~~~--~g~~~~~~~-----------~~g-~L~v~~~~---~gl~~~~-~~g-~~~l~ 140 (360)
.+.++|. +|+.+ . +..||.++ +|+.+.+.. ++| .|.+.... ..++.++ .++ .+.+.
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT 273 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT 273 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc
Confidence 4556764 56554 3 34688888 554433321 133 34433221 2477777 555 55543
Q ss_pred eccCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCC
Q 018144 141 SYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 219 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~ 219 (360)
.. .+. -....+.+|| .|+|+... ...-.|+++|.++++.+.+..... .+ ..++|||+
T Consensus 274 ~~-~~~----d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPDG~ 331 (419)
T PRK04043 274 NY-PGI----DVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTYKN 331 (419)
T ss_pred cC-CCc----cCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECCCCC
Confidence 21 110 1123688999 58776432 112379999999888866543211 13 48999999
Q ss_pred EEEEEeCCC--------CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHH
Q 018144 220 YVVVCESWK--------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHV 290 (360)
Q Consensus 220 ~l~v~~t~~--------~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~ 290 (360)
.+.++.... ..|+.+++++.. .+.+... +.-....+.+||. |+.+....
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~----------------- 389 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQFPRFSSDGGSIMFIKYLG----------------- 389 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcCCeEECCCCCEEEEEEccC-----------------
Confidence 777765432 478888886542 2333221 1222366788886 44443321
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 018144 291 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 329 (360)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~ 329 (360)
....+..++.+|.....+....|.
T Consensus 390 ---------------~~~~L~~~~l~g~~~~~l~~~~g~ 413 (419)
T PRK04043 390 ---------------NQSALGIIRLNYNKSFLFPLKVGK 413 (419)
T ss_pred ---------------CcEEEEEEecCCCeeEEeecCCCc
Confidence 135688889999877777655553
No 88
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.25 E-value=0.072 Score=48.16 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=78.4
Q ss_pred ceEEEec--CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC-CCC--CCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 018144 210 NGVALSR--DEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPG--APDNINLAPDGTFWIAIIKLDARRMKILNSS 284 (360)
Q Consensus 210 ngia~~~--dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-~~g--~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~ 284 (360)
.|+|+.. .+++||.++..+++|-+||-+-.+......|.+. +|. .|-||.- -.|+|||.-........|
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d----- 214 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRND----- 214 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEE-ECCeEEEEEEecCCcccc-----
Confidence 4677664 3679999999999999997542222111223322 221 3666643 347899976541100000
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEE-------ECCEEEEEeCCCCeEEEE
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-------VDNHLYVISLTSNFIGKV 357 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-------~~g~Lylgs~~~~~i~~~ 357 (360)
- ......|.|-.||.+|+.++.+.+... ++.+-+++. -.|.|.||++...+|..+
T Consensus 215 ---------------~-v~G~G~G~VdvFd~~G~l~~r~as~g~--LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaF 276 (336)
T TIGR03118 215 ---------------E-VAGAGLGYVNVFTLNGQLLRRVASSGR--LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAY 276 (336)
T ss_pred ---------------c-ccCCCcceEEEEcCCCcEEEEeccCCc--ccCCceeeeChhhhCCCCCCeEEeecCCceeEEe
Confidence 0 012335789999999999999865333 455555544 138899999999999888
Q ss_pred eC
Q 018144 358 QL 359 (360)
Q Consensus 358 ~l 359 (360)
+.
T Consensus 277 D~ 278 (336)
T TIGR03118 277 DP 278 (336)
T ss_pred cC
Confidence 73
No 89
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.22 E-value=0.054 Score=51.44 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=59.1
Q ss_pred EEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEE
Q 018144 188 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 267 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lw 267 (360)
.|-.||..+++++++..++.....+.+++||+.+.+++. +..|+.++++.. +.+..-....++..++...+++ -|
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididng---nv~~idkS~~~lItdf~~~~ns-r~ 457 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNS-RW 457 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCC---CeeEecccccceeEEEEEcCCc-ee
Confidence 688888888998988888988999999999998877775 578999999753 3333322334556667777765 56
Q ss_pred EEEec
Q 018144 268 IAIIK 272 (360)
Q Consensus 268 va~~~ 272 (360)
+|-.-
T Consensus 458 iAYaf 462 (668)
T COG4946 458 IAYAF 462 (668)
T ss_pred EEEec
Confidence 76544
No 90
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.033 Score=52.81 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=44.4
Q ss_pred CcceEEEecCC------CEEEEEeCCCCEEEEEEecCCcCcceeeecc-CCCCCCceeEEcCCCCEEEEEec
Q 018144 208 FANGVALSRDE------DYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 208 ~pngia~~~dg------~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
-|.|++|.... +.++|+....-.+.+.++++...-..+.+.. ...+.|-++++++||.|++++..
T Consensus 315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence 46788887431 2489998877678887777652222222222 23378999999999999999876
No 91
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.15 E-value=0.26 Score=47.37 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=49.3
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC--CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
..|+.+|.++++.+.+..........++++||+.++++.... .+|+.+++++. ..+.+.. ........+.++|
T Consensus 302 ~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg 376 (417)
T TIGR02800 302 PQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNG 376 (417)
T ss_pred ceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCC
Confidence 369999988777766554444556788999999888876543 37888887652 2233321 1122344677777
Q ss_pred C-EEEEE
Q 018144 265 T-FWIAI 270 (360)
Q Consensus 265 ~-lwva~ 270 (360)
+ |+.+.
T Consensus 377 ~~l~~~~ 383 (417)
T TIGR02800 377 RMILYAT 383 (417)
T ss_pred CEEEEEE
Confidence 5 44443
No 92
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.11 E-value=0.14 Score=46.64 Aligned_cols=165 Identities=16% Similarity=0.060 Sum_probs=89.8
Q ss_pred cEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE---EeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 153 DVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 153 ~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~---~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.-++++||+ ||.|.... ....|.|-.||.. ..+.+ +....-.|.-+.+.+||+.|.|++-+-
T Consensus 55 Hg~fs~dG~~LytTEnd~-------------~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDY-------------ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred CEEEcCCCCEEEEecccc-------------CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 446888996 55553321 1235788899987 33433 334455799999999999899986431
Q ss_pred C-----------------EEEEEEec-CCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHH
Q 018144 229 F-----------------RCRKYWLK-GERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 290 (360)
Q Consensus 229 ~-----------------~i~~~~~~-g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~ 290 (360)
. .|..+|.. |....+.+.-.+...-..--++++.+|.+|++......+
T Consensus 121 ~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~-------------- 186 (305)
T PF07433_consen 121 ETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP-------------- 186 (305)
T ss_pred ccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC--------------
Confidence 0 12222211 111111110000000013347789999999998752100
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCC---CcccceeeEEEEC--CEEEEEeCCCCeEEEEeC
Q 018144 291 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG---QLMSFVTSGLQVD--NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g---~~~~~~t~~~~~~--g~Lylgs~~~~~i~~~~l 359 (360)
......|.... .|+.+..+.-++. ...+++.+|..+. +.+.+++-.++.+.+++.
T Consensus 187 -------------~~~~PLva~~~-~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 187 -------------GDAPPLVALHR-RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred -------------CccCCeEEEEc-CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 00112333444 3333555544432 1235677777753 467788888998888864
No 93
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.07 E-value=0.19 Score=44.41 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=79.5
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE--CC-eeeEE------------EecCCeEEEEeCCCcEEEEc-C-CC
Q 018144 73 VGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DG-TWVNW------------KFIDSHLIICDNANGLHKVS-E-DG 135 (360)
Q Consensus 73 ~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g-~~~~~------------~~~~g~L~v~~~~~gl~~~~-~-~g 135 (360)
+-++++++--.+ + +..+.+|+.+|++|.++ +| +...+ ...+|-||.+++++..+.+| . .+
T Consensus 50 ilg~RiE~sa~v-v--gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 50 ILGVRIECSAIV-V--GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred hhCceeeeeeEE-E--CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 444444444333 2 34577888888898888 55 22211 23467799999888899999 3 34
Q ss_pred eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--C----CCcC
Q 018144 136 VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--D----GFYF 208 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~----~l~~ 208 (360)
-++.....|..+..| ++++ +|.||++. ..|.|++.+++++..+.+- + -+..
T Consensus 127 -cVykskcgG~~f~sP---~i~~g~~sly~a~------------------t~G~vlavt~~~~~~~~~w~~~~~~PiF~s 184 (354)
T KOG4649|consen 127 -CVYKSKCGGGTFVSP---VIAPGDGSLYAAI------------------TAGAVLAVTKNPYSSTEFWAATRFGPIFAS 184 (354)
T ss_pred -eEEecccCCceeccc---eecCCCceEEEEe------------------ccceEEEEccCCCCcceehhhhcCCccccC
Confidence 112223334333333 5666 88999964 3478999998877544321 1 1112
Q ss_pred c----ceEEE-ecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 209 A----NGVAL-SRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 209 p----ngia~-~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
| ..+.+ .-||..+-+.+ .+..|+|+..+|+
T Consensus 185 plcv~~sv~i~~VdG~l~~f~~-sG~qvwr~~t~Gp 219 (354)
T KOG4649|consen 185 PLCVGSSVIITTVDGVLTSFDE-SGRQVWRPATKGP 219 (354)
T ss_pred ceeccceEEEEEeccEEEEEcC-CCcEEEeecCCCc
Confidence 2 22222 23665443443 4467788776654
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.07 E-value=0.14 Score=48.17 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=102.2
Q ss_pred EEEeCCCcEEEEc--CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 120 IICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 120 ~v~~~~~gl~~~~--~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
+++..+.|.+.|. ++| +........+ -.....++.+||.|+.+ +..+|.|-.||.+
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~---v~~ts~~fHpDgLifgt-----------------gt~d~~vkiwdlk 377 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSD---VEYTSAAFHPDGLIFGT-----------------GTPDGVVKIWDLK 377 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeecccc---ceeEEeeEcCCceEEec-----------------cCCCceEEEEEcC
Confidence 3333456677666 566 3333222111 12446688899998886 5567777778876
Q ss_pred CCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCc
Q 018144 196 SNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLD 274 (360)
Q Consensus 196 tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~ 274 (360)
.+....-..+ -.-...|+|+.+| ++.++......|..+|+. +...+..+.-....-...+.+|..|.+.+....
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLR--Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~-- 452 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLR--KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS-- 452 (506)
T ss_pred CccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEeh--hhcccceeeccccccceeEEEcCCCCeEEeecc--
Confidence 4432111122 1223578999888 566776666678888874 333444443111112456889999976654432
Q ss_pred hhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC---CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 275 ARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE---DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 275 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~---~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
.-.|+.+.. +.+.+..+++-.| ..+++.+.+..-|+++-..
T Consensus 453 --------------------------------~l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 453 --------------------------------DLQVYICKKKTKSWTEIKELADHSG----LSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred --------------------------------eeEEEEEecccccceeeehhhhccc----ccceeeecccceEEeeccc
Confidence 125666664 3344555555444 3567777777788887777
Q ss_pred CeEEEE
Q 018144 352 NFIGKV 357 (360)
Q Consensus 352 ~~i~~~ 357 (360)
+++.++
T Consensus 497 d~~l~~ 502 (506)
T KOG0289|consen 497 DAILRL 502 (506)
T ss_pred hhheEE
Confidence 777554
No 95
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.06 E-value=0.15 Score=50.80 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCCEEEEecCCeEEEEE--CCeee--E--------------------EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeec
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWV--N--------------------WKFIDSHLIICDNANGLHKVS-EDG-VENFLSY 142 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~--~--------------------~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~ 142 (360)
+|.||+++.+|.|+.+| +|+.. . ....++++|+++.+..++.+| .+| ...-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~- 147 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK- 147 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc-
Confidence 78999999889999999 67421 0 011247899998888899999 788 322111
Q ss_pred cCCcc--ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 143 VNGSK--LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 143 ~~~~~--~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
..... ......-.+ .+|.||+..++..+ ...|.|+.+|.+||+...
T Consensus 148 ~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 148 NGDYKAGYTITAAPLV-VKGKVITGISGGEF------------GVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred cccccccccccCCcEE-ECCEEEEeeccccc------------CCCcEEEEEECCCCceeE
Confidence 11100 000011122 25788886543221 124678888888887654
No 96
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.06 E-value=0.049 Score=49.61 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=83.7
Q ss_pred cCCccEEEEEcCCCCeEEEEeC---CCcCcceEEEecCCCEEEEEeC----CCCEEEEEEecCCcCcceeeeccCCCCCC
Q 018144 183 GKPHGQLLKYDPSSNITTLVAD---GFYFANGVALSRDEDYVVVCES----WKFRCRKYWLKGERKGKLETFAENLPGAP 255 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~---~l~~pngia~~~dg~~l~v~~t----~~~~i~~~~~~g~~~~~~~~~~~~~~g~p 255 (360)
.++.-.++++|+.+++...... +-.|----++++||+.||.+|. +.+.|-+||... .......|...-- -|
T Consensus 24 RRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~GI-GP 101 (305)
T PF07433_consen 24 RRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHGI-GP 101 (305)
T ss_pred eCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCCc-Ch
Confidence 3455568889999888765432 1122223458999999999965 456788888762 2223333332222 48
Q ss_pred ceeEEcCCC-CEEEEEecCchhHHHHhhcchhH-HH-HHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcc
Q 018144 256 DNINLAPDG-TFWIAIIKLDARRMKILNSSKLI-KH-VLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLM 331 (360)
Q Consensus 256 d~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~-r~-~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~ 331 (360)
..+.+.+|| +|.||+.+. ...|.. |+ +.. ..-...+..+| .+|++++...-|.....
T Consensus 102 Hel~l~pDG~tLvVANGGI--------~Thpd~GR~kLNl-----------~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 102 HELLLMPDGETLVVANGGI--------ETHPDSGRAKLNL-----------DTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred hhEEEcCCCCEEEEEcCCC--------ccCcccCceecCh-----------hhcCCceEEEecCCCceeeeeecCccccc
Confidence 999999999 899998873 233322 11 110 11123456674 57888877655443212
Q ss_pred cceeeEEEE-CCEEEEEe
Q 018144 332 SFVTSGLQV-DNHLYVIS 348 (360)
Q Consensus 332 ~~~t~~~~~-~g~Lylgs 348 (360)
..+--+... +|.+|++-
T Consensus 163 lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred cceeeEEecCCCcEEEEE
Confidence 223333333 47777764
No 97
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.06 E-value=0.25 Score=45.44 Aligned_cols=132 Identities=20% Similarity=0.280 Sum_probs=59.8
Q ss_pred ecCCeEEEEeCCCcEEEEc-CCC--eEEEe--eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccE
Q 018144 114 FIDSHLIICDNANGLHKVS-EDG--VENFL--SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ 188 (360)
Q Consensus 114 ~~~g~L~v~~~~~gl~~~~-~~g--~~~l~--~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~ 188 (360)
..+...||+.. .|++... ..| .+.+. ...++. +..+....++.+++.. ..|.
T Consensus 69 f~~~~g~ivG~-~g~ll~T~DgG~tW~~v~l~~~lpgs----~~~i~~l~~~~~~l~~------------------~~G~ 125 (302)
T PF14870_consen 69 FDGNEGWIVGE-PGLLLHTTDGGKTWERVPLSSKLPGS----PFGITALGDGSAELAG------------------DRGA 125 (302)
T ss_dssp EETTEEEEEEE-TTEEEEESSTTSS-EE----TT-SS-----EEEEEEEETTEEEEEE------------------TT--
T ss_pred ecCCceEEEcC-CceEEEecCCCCCcEEeecCCCCCCC----eeEEEEcCCCcEEEEc------------------CCCc
Confidence 34566787653 4555555 444 44432 223332 3344444555655532 2356
Q ss_pred EEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEE
Q 018144 189 LLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 267 (360)
Q Consensus 189 l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lw 267 (360)
||+=.-.....+.+..+ ...-+.+..++||+++.|+. .+.+++-.-.|+. ..+.+.........+|.++++|++|
T Consensus 126 iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~--~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~~lw 201 (302)
T PF14870_consen 126 IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS--RGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDGNLW 201 (302)
T ss_dssp EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET--TSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS-EE
T ss_pred EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC--cccEEEEecCCCc--cceEEccCccceehhceecCCCCEE
Confidence 77655433344443332 23445667788997555554 3446654433321 1222222223356788999999999
Q ss_pred EEEec
Q 018144 268 IAIIK 272 (360)
Q Consensus 268 va~~~ 272 (360)
+...+
T Consensus 202 ~~~~G 206 (302)
T PF14870_consen 202 MLARG 206 (302)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 98755
No 98
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.05 E-value=0.31 Score=47.26 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=56.7
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC--C
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--W 227 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t--~ 227 (360)
....++.+||+ |+++... .....|+.+|..+++...+...-......+++|||+.++++.. +
T Consensus 198 v~~p~wSPDG~~la~~s~~---------------~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFE---------------SKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred cccceEcCCCCEEEEEEcc---------------CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC
Confidence 34567889995 5553211 1124699999988877655432223456889999998876533 3
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 265 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~ 265 (360)
...|+.++.++... +.+. ...+......+++||.
T Consensus 263 ~~~Iy~~d~~~~~~---~~lt-~~~~~~~~~~wSpDG~ 296 (427)
T PRK02889 263 NSQIYTVNADGSGL---RRLT-QSSGIDTEPFFSPDGR 296 (427)
T ss_pred CceEEEEECCCCCc---EECC-CCCCCCcCeEEcCCCC
Confidence 34688888765332 2222 1222333456788886
No 99
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.96 E-value=0.0039 Score=38.89 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=33.0
Q ss_pred eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 203 ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 203 ~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
..++..|+|+++++.++.+|++++....|.+.+++|.
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 4567899999999999999999999999999998763
No 100
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.93 E-value=0.31 Score=44.50 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=90.7
Q ss_pred EEecCCeEEEEeCCCcEEEE---c---CC----C-eEE-Ee---eccCCccccccccEEEcCCCcEEEEeCCCCCCCccc
Q 018144 112 WKFIDSHLIICDNANGLHKV---S---ED----G-VEN-FL---SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY 176 (360)
Q Consensus 112 ~~~~~g~L~v~~~~~gl~~~---~---~~----g-~~~-l~---~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~ 176 (360)
+...+++||+++.. .|+++ + +. + ... +. ....|. -.+.+|++ .++.+||.++.
T Consensus 54 l~~~~~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGd--idiHdia~-~~~~l~fVNT~-------- 121 (335)
T TIGR03032 54 LAVSPQSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGD--IDAHDLAL-GAGRLLFVNTL-------- 121 (335)
T ss_pred eeeeCCeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccC--cchhheee-cCCcEEEEECc--------
Confidence 44467889998854 47777 2 11 1 111 11 111121 24678888 67789987643
Q ss_pred eecccccCCccEEEEEcCCCCeEEEE----------eCCCcCcceEEEecCCCEEEEEeCCCC---EEEE---------E
Q 018144 177 CLDILEGKPHGQLLKYDPSSNITTLV----------ADGFYFANGVALSRDEDYVVVCESWKF---RCRK---------Y 234 (360)
Q Consensus 177 ~~~~~~~~~~g~l~~~d~~tg~~~~~----------~~~l~~pngia~~~dg~~l~v~~t~~~---~i~~---------~ 234 (360)
-.-|..+++. ..+... .++-++-||+|+. ||+--||+.-+.. .-+| +
T Consensus 122 ---------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vi 190 (335)
T TIGR03032 122 ---------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVI 190 (335)
T ss_pred ---------ceeEEEECCC-CccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCcccccccccCCeEEE
Confidence 2335556653 222221 1233567999995 5667887754321 1111 2
Q ss_pred EecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC
Q 018144 235 WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA 314 (360)
Q Consensus 235 ~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~ 314 (360)
|+. .-+++.+.+. +|..-.. .+|+||+.... .+.|.++|
T Consensus 191 dv~-----s~evl~~GLs-mPhSPRW-hdgrLwvldsg----------------------------------tGev~~vD 229 (335)
T TIGR03032 191 DIP-----SGEVVASGLS-MPHSPRW-YQGKLWLLNSG----------------------------------RGELGYVD 229 (335)
T ss_pred EeC-----CCCEEEcCcc-CCcCCcE-eCCeEEEEECC----------------------------------CCEEEEEc
Confidence 221 1123332221 3444333 25899999987 57999999
Q ss_pred CC-CcEEEEEeCCCCCcccceeeEEEECCEEEEE
Q 018144 315 ED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 347 (360)
Q Consensus 315 ~~-g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylg 347 (360)
++ |+......-| | .+.++...++.+++|
T Consensus 230 ~~~G~~e~Va~vp-G----~~rGL~f~G~llvVg 258 (335)
T TIGR03032 230 PQAGKFQPVAFLP-G----FTRGLAFAGDFAFVG 258 (335)
T ss_pred CCCCcEEEEEECC-C----CCcccceeCCEEEEE
Confidence 97 8765555443 2 355566665555554
No 101
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.86 E-value=0.21 Score=47.18 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=76.3
Q ss_pred EEEEEcCCCCeEEEEe-------CCCcCcceEEEec---CCC-EEEEEeCCCCEEEEEEecCCcCc-----ceeeeccCC
Q 018144 188 QLLKYDPSSNITTLVA-------DGFYFANGVALSR---DED-YVVVCESWKFRCRKYWLKGERKG-----KLETFAENL 251 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~-------~~l~~pngia~~~---dg~-~l~v~~t~~~~i~~~~~~g~~~~-----~~~~~~~~~ 251 (360)
++|++|++++.++.+. ..+..+.|+|+-. +|+ +.++.. ..+.+..|.+.....+ ..+.|. .
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~ 206 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFK--V 206 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE---
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEec--C
Confidence 6899999888776543 2345688999853 354 333334 3466777766421111 122332 3
Q ss_pred CCCCceeEEc-CCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC--CC-cEEEEE--eC
Q 018144 252 PGAPDNINLA-PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DG-TIIRNL--VD 325 (360)
Q Consensus 252 ~g~pd~i~~d-~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g-~~~~~~--~~ 325 (360)
+.-+.++++| +.|.||++... .+|++|+. ++ ..-+.+ ..
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~-----------------------------------~GIW~y~Aep~~~~~~~~v~~~~ 251 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED-----------------------------------VGIWRYDAEPEGGNDRTLVASAD 251 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT-----------------------------------TEEEEEESSCCC-S--EEEEEBS
T ss_pred CCcceEEEEecccCCEEEecCc-----------------------------------cEEEEEecCCCCCCcceeeeccc
Confidence 4457889997 57789999876 48999864 32 221222 12
Q ss_pred CCCCcccceeeEEEE-----CCEEEEEeCCCCeEEEEeC
Q 018144 326 PTGQLMSFVTSGLQV-----DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 326 ~~g~~~~~~t~~~~~-----~g~Lylgs~~~~~i~~~~l 359 (360)
..+. ...+.++... .|+|.++|-.++...+++.
T Consensus 252 g~~l-~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 252 GDGL-VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp SSSB--S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred cccc-ccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 2222 3445554432 2789999999999999875
No 102
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.85 E-value=0.0021 Score=36.49 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=22.5
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEE
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRL 104 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~ 104 (360)
+..|.+|++|++|+||+++ .+.+|.++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4689999999999999999 66677654
No 103
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.83 E-value=0.5 Score=45.38 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=67.7
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.++.++ .+| .+.+.. ..+ ....+++++||. |+++... .....|+.+|..+++.+.+.
T Consensus 215 ~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spDg~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~ 274 (417)
T TIGR02800 215 EIYVQDLATGQREKVAS-FPG----MNGAPAFSPDGSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLT 274 (417)
T ss_pred EEEEEECCCCCEEEeec-CCC----CccceEECCCCCEEEEEECC---------------CCCccEEEEECCCCCEEECC
Confidence 466777 566 544422 222 233567889985 7665321 11236999998877766654
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
.........++++||+.++++... ...|+.++.++.+. ..+. ..........++++|+..+.
T Consensus 275 ~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~---~~l~-~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 275 NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV---RRLT-FRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEee-cCCCCccCeEECCCCCEEEE
Confidence 433233456889999877665432 33788888765332 2221 11123445677888864443
No 104
>PRK13684 Ycf48-like protein; Provisional
Probab=96.80 E-value=0.45 Score=44.54 Aligned_cols=109 Identities=7% Similarity=-0.046 Sum_probs=55.4
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEE-ecCCcCcceeeeccCCC-CCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYW-LKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSS 284 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~-~~g~~~~~~~~~~~~~~-g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~ 284 (360)
...+++++.++++ +|+.... + ..++. .++...-+......... .....+.+.+++.+|++...
T Consensus 215 ~~l~~i~~~~~g~-~~~vg~~-G-~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~------------ 279 (334)
T PRK13684 215 RRLQSMGFQPDGN-LWMLARG-G-QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN------------ 279 (334)
T ss_pred ccceeeeEcCCCC-EEEEecC-C-EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC------------
Confidence 4567888888887 4444433 2 34442 33321111000000000 01235667778899997654
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEE-ECCEEEEEeCCCCeE
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFI 354 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~Lylgs~~~~~i 354 (360)
+.+++-...|+..+....+.+.. .....+.. ++++.|+.+..+--|
T Consensus 280 -----------------------G~v~~S~d~G~tW~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 280 -----------------------GTLLVSKDGGKTWEKDPVGEEVP-SNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred -----------------------CeEEEeCCCCCCCeECCcCCCCC-cceEEEEEeCCCceEEECCCceEE
Confidence 45665445566555443333332 23444444 468888887765443
No 105
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.79 E-value=0.066 Score=50.34 Aligned_cols=125 Identities=15% Similarity=0.034 Sum_probs=66.2
Q ss_pred ccEEEEEcCCCCeEEEEeCCC-cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCC--ceeEEcC
Q 018144 186 HGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP--DNINLAP 262 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l-~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~p--d~i~~d~ 262 (360)
...++.+|.++++.+++.++- ....|..++++.+.+|.... +.+|.+++++..+ +..++. ...+.- .....+.
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e--~~~vy~-~p~~~~g~gt~v~n~ 134 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLE--ERVVYE-VPDDWKGYGTWVANS 134 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT----EEEEEE---TTEEEEEEEEE-T
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCc--EEEEEE-CCcccccccceeeCC
Confidence 346999999999999887643 23447888898888766554 3589999987643 223332 111111 2344578
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCC
Q 018144 263 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDP 326 (360)
Q Consensus 263 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~ 326 (360)
++...++....+. ...-+.++...++++. ..+..+|++++- .|+....+.+.
T Consensus 135 d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~-----------a~p~~~i~~idl~tG~~~~v~~~~ 187 (386)
T PF14583_consen 135 DCTKLVGIEISRE-DWKPLTKWKGFREFYE-----------ARPHCRIFTIDLKTGERKVVFEDT 187 (386)
T ss_dssp TSSEEEEEEEEGG-G-----SHHHHHHHHH-----------C---EEEEEEETTT--EEEEEEES
T ss_pred CccEEEEEEEeeh-hccCccccHHHHHHHh-----------hCCCceEEEEECCCCceeEEEecC
Confidence 8999888765332 2222345666777665 334578899985 46655555443
No 106
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.79 E-value=0.55 Score=45.34 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=52.6
Q ss_pred cCCccEEEEEcCCCCeEEEEeC--CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEE
Q 018144 183 GKPHGQLLKYDPSSNITTLVAD--GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINL 260 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~--~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~ 260 (360)
+...|.|..++..+|....+.. ......+++.+..+. ++.+.. ...|.++++.+......+.+ .+..-|-++++
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~-Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~lav 413 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIGW-DDTLRVISLKDNGYTKSEVV--KLGSQPKGLAV 413 (603)
T ss_pred eccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEec-CCeEEEEecccCccccccee--ecCCCceeEEE
Confidence 4456788888877665544431 123456777776554 766665 46788888765433333332 23335789999
Q ss_pred cCCCCEEE-EEec
Q 018144 261 APDGTFWI-AIIK 272 (360)
Q Consensus 261 d~~G~lwv-a~~~ 272 (360)
.++|.+-+ ++..
T Consensus 414 ~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 414 LSDGGTAVVACIS 426 (603)
T ss_pred cCCCCEEEEEecC
Confidence 99885444 4443
No 107
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.79 E-value=0.34 Score=42.87 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=76.8
Q ss_pred CcceEEEcCCCCEEEEecCCeEEEEE--CCeee--EE--------E-ecCCeEEEEeCCCcEEEEc-CCC--eEEEeecc
Q 018144 80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV--NW--------K-FIDSHLIICDNANGLHKVS-EDG--VENFLSYV 143 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~--~~--------~-~~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~ 143 (360)
.|--+.-|..-.+|+|++.+.+..+| +|+.. .+ + ..++.+.++-...+++.++ ++| ...+...
T Consensus 14 spLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~- 92 (354)
T KOG4649|consen 14 SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL- 92 (354)
T ss_pred CcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh-
Confidence 45555666677889999888888888 66422 11 0 1244466666667788787 777 3333211
Q ss_pred CCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEec-CCCE
Q 018144 144 NGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSR-DEDY 220 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~-dg~~ 220 (360)
+.. .... ..|.+| -||.+ +.++..+.+|+.+.....-. -+...-.+-++++ ++ .
T Consensus 93 ~~v---k~~a-~~d~~~glIycg------------------shd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~-s 149 (354)
T KOG4649|consen 93 ETV---KVRA-QCDFDGGLIYCG------------------SHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG-S 149 (354)
T ss_pred hhh---ccce-EEcCCCceEEEe------------------cCCCcEEEecccccceEEecccCCceeccceecCCCc-e
Confidence 110 0111 455555 68884 34567888998754332111 1111223345666 55 5
Q ss_pred EEEEeCCCCEEEEEEecC
Q 018144 221 VVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g 238 (360)
||++.+. +++.+...+.
T Consensus 150 ly~a~t~-G~vlavt~~~ 166 (354)
T KOG4649|consen 150 LYAAITA-GAVLAVTKNP 166 (354)
T ss_pred EEEEecc-ceEEEEccCC
Confidence 9999885 6788887654
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.75 E-value=0.58 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=19.3
Q ss_pred ceEEEcCCCCEEEEecCCeEEEEE
Q 018144 82 EDASMDKNGVIYTATRDGWIKRLQ 105 (360)
Q Consensus 82 e~i~~d~~G~l~v~~~~G~I~~~~ 105 (360)
-++++.++|.+..|+.+|.|+.++
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWS 273 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEe
Confidence 367777888888888888888887
No 109
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.74 E-value=0.052 Score=50.10 Aligned_cols=99 Identities=17% Similarity=0.103 Sum_probs=57.7
Q ss_pred CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE---------
Q 018144 160 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR--------- 230 (360)
Q Consensus 160 G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~--------- 230 (360)
.++||.|... .+. .++++.||.+++++.=..+....+| +++++|++.+|++++.-.|
T Consensus 3 ~rvyV~D~~~------------~~~-~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVF------------FHM-TSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GG------------GGS-SEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCcc------------ccc-cceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence 5789988641 122 3699999999888755444444555 7789999999999875222
Q ss_pred EEEEEecCCcCcceeeeccCC-----CCCCceeEEcCCC-CEEEEEecC
Q 018144 231 CRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDG-TFWIAIIKL 273 (360)
Q Consensus 231 i~~~~~~g~~~~~~~~~~~~~-----~g~pd~i~~d~~G-~lwva~~~~ 273 (360)
|..||.+.-. -..++..... -..+..+.+..|| .++|-+..+
T Consensus 69 v~~~D~~TL~-~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 69 VEIWDTQTLS-PTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP 116 (342)
T ss_dssp EEEEETTTTE-EEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred EEEEecCcCc-ccceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence 3445543211 1122221111 1246778888777 488887774
No 110
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.70 E-value=0.59 Score=45.37 Aligned_cols=74 Identities=20% Similarity=0.100 Sum_probs=45.8
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC-
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK- 228 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~- 228 (360)
.....+++||+ |.++.. ......|+.+|..+++.+.+...-.....++++|||+.|+++....
T Consensus 206 v~~p~wSPDG~~la~~s~---------------~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSF---------------ENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred cccceEcCCCCEEEEEEe---------------cCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC
Confidence 45678899995 433211 0113468899988776655533222334689999999887765322
Q ss_pred -CEEEEEEecCC
Q 018144 229 -FRCRKYWLKGE 239 (360)
Q Consensus 229 -~~i~~~~~~g~ 239 (360)
..|+.+++++.
T Consensus 271 ~~~Iy~~d~~~~ 282 (429)
T PRK01742 271 VLNIYVMGANGG 282 (429)
T ss_pred cEEEEEEECCCC
Confidence 35777777653
No 111
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=96.62 E-value=0.015 Score=43.00 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=51.7
Q ss_pred ceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccce
Q 018144 256 DNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFV 334 (360)
Q Consensus 256 d~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~ 334 (360)
+++.++++ |.+|++....+-...+ ++..++. ..+.|+++++||..+..+++.+ | +.++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~------~~~~~le-----------~~~~GRll~ydp~t~~~~vl~~--~--L~fp 59 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRD------WVYDLLE-----------GRPTGRLLRYDPSTKETTVLLD--G--LYFP 59 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTG------HHHHHHH-----------T---EEEEEEETTTTEEEEEEE--E--ESSE
T ss_pred CceeEecCCCEEEEEeCccccCccc------eeeeeec-----------CCCCcCEEEEECCCCeEEEehh--C--CCcc
Confidence 46889988 9999998864422111 1222222 4447999999999888777764 4 3466
Q ss_pred eeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 335 TSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 335 t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
.+++.. +..|.++.....+|.|+=|
T Consensus 60 NGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 60 NGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 667665 3679999999999999865
No 112
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.60 E-value=0.46 Score=44.83 Aligned_cols=138 Identities=15% Similarity=0.134 Sum_probs=65.7
Q ss_pred eEEEEE--CCeeeEEEe-------------cCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcE
Q 018144 100 WIKRLQ--DGTWVNWKF-------------IDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSL 162 (360)
Q Consensus 100 ~I~~~~--~g~~~~~~~-------------~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l 162 (360)
.+|.+| +++.+-+.. .+..||.....+.|.+++ .++ .+.+....++- ..--...+++|++.
T Consensus 61 nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~--~g~gt~v~n~d~t~ 138 (386)
T PF14583_consen 61 NLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW--KGYGTWVANSDCTK 138 (386)
T ss_dssp EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE--EEEEEEEE-TTSSE
T ss_pred ceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc--ccccceeeCCCccE
Confidence 577777 555544332 122343333456788888 666 54443322221 11112234667777
Q ss_pred EEEeCCCCCC-----CccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecC-CCEEEEEeCC-----CCEE
Q 018144 163 YFTVSSSKYL-----PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD-EDYVVVCESW-----KFRC 231 (360)
Q Consensus 163 ~vtd~~~~~~-----~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~d-g~~l~v~~t~-----~~~i 231 (360)
++.....+-. .-....++++..+..+|+.+|.+||+.+++...-..-+-+.++|. ...+-+|.-+ ..||
T Consensus 139 ~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~Ri 218 (386)
T PF14583_consen 139 LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRI 218 (386)
T ss_dssp EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SE
T ss_pred EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEE
Confidence 6654321111 011234567778889999999999999887765555555666653 2334444322 2367
Q ss_pred EEEEecCC
Q 018144 232 RKYWLKGE 239 (360)
Q Consensus 232 ~~~~~~g~ 239 (360)
+.++.+|.
T Consensus 219 W~i~~dg~ 226 (386)
T PF14583_consen 219 WTINTDGS 226 (386)
T ss_dssp EEEETTS-
T ss_pred EEEEcCCC
Confidence 77776653
No 113
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.58 E-value=0.55 Score=46.89 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=28.2
Q ss_pred CceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC
Q 018144 306 GGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 351 (360)
Q Consensus 306 ~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~ 351 (360)
..+.+..+|. +|+++..+..+.+. ...+. ....+|++|+....+
T Consensus 480 ~~G~l~a~D~~TGe~lw~~~~g~~~-~a~P~-ty~~~G~qYv~~~~G 524 (527)
T TIGR03075 480 LEGYFKAFDAKTGEELWKFKTGSGI-VGPPV-TYEQDGKQYVAVLSG 524 (527)
T ss_pred CCCeEEEEECCCCCEeEEEeCCCCc-eecCE-EEEeCCEEEEEEEec
Confidence 3578889985 69998888765432 22121 124589999986543
No 114
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.49 E-value=0.27 Score=45.66 Aligned_cols=177 Identities=18% Similarity=0.208 Sum_probs=103.1
Q ss_pred cceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE--CCee-----------eEEEe-------------c-------
Q 018144 69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTW-----------VNWKF-------------I------- 115 (360)
Q Consensus 69 ~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~-----------~~~~~-------------~------- 115 (360)
.......|-...-.|+....+|.||.|+.|+.|-.++ +|.. ..+.. .
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred eEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 3344445556667788888899999999999887776 5521 01100 0
Q ss_pred ------------------CCeEEEEeCCCcEEEEcCCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccc
Q 018144 116 ------------------DSHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY 176 (360)
Q Consensus 116 ------------------~g~L~v~~~~~gl~~~~~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~ 176 (360)
+.+|.-+.-+.-++..++.. .+.+ +...+. ...+|.+.+.|||+...+-+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi-~rmtgH-q~lVn~V~fSPd~r~IASaS--------- 386 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI-TRMTGH-QALVNHVSFSPDGRYIASAS--------- 386 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch-hhhhch-hhheeeEEECCCccEEEEee---------
Confidence 01222222223343333211 1111 011111 24689999999987555422
Q ss_pred eecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCC
Q 018144 177 CLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 255 (360)
Q Consensus 177 ~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~p 255 (360)
.+..|-.+|..+|++-....+ ..-.+-++++.|-+ |+|+.+....|..++....+ +...+||.-
T Consensus 387 --------FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK------l~~DLpGh~ 451 (480)
T KOG0271|consen 387 --------FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK------LKQDLPGHA 451 (480)
T ss_pred --------cccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee------ecccCCCCC
Confidence 234566777777876433332 34567899999985 88888877788888764322 233577776
Q ss_pred ceeE-E--cCCCCEEEEEe
Q 018144 256 DNIN-L--APDGTFWIAII 271 (360)
Q Consensus 256 d~i~-~--d~~G~lwva~~ 271 (360)
|.+. + .+||..-++..
T Consensus 452 DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 452 DEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred ceEEEEEecCCCceeecCC
Confidence 7644 3 57887766543
No 115
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.46 E-value=0.53 Score=45.27 Aligned_cols=137 Identities=11% Similarity=0.063 Sum_probs=79.2
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE-CCeeeEEEe------------cCCeEEEEeCCCcEEEEc-CCC--e
Q 018144 73 VGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKF------------IDSHLIICDNANGLHKVS-EDG--V 136 (360)
Q Consensus 73 ~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~-~g~~~~~~~------------~~g~L~v~~~~~gl~~~~-~~g--~ 136 (360)
+|+. ...|+.|+.... .||+|+..+.|++=+ .+.+..... +...+++.....+.+++= ... .
T Consensus 325 lPe~-~G~iRtv~e~~~-di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~w 402 (626)
T KOG2106|consen 325 LPEQ-FGPIRTVAEGKG-DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEW 402 (626)
T ss_pred Cchh-cCCeeEEecCCC-cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeE
Confidence 4443 456677776644 499999777777665 332221111 122234433233333322 222 1
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEec
Q 018144 137 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 216 (360)
Q Consensus 137 ~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~ 216 (360)
+.+. + .....+.+++.|.+-+ ++..|+.+.+|.++..+..+......-+.+.++|
T Consensus 403 t~~~---~----d~~~~~~fhpsg~va~------------------Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp 457 (626)
T KOG2106|consen 403 TKII---E----DPAECADFHPSGVVAV------------------GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP 457 (626)
T ss_pred EEEe---c----CceeEeeccCcceEEE------------------eeccceEEEEecccceeEEEEecCCceEEEEEcC
Confidence 1111 1 1234567788886655 4557899999988766655555555667899999
Q ss_pred CCCEEEEEeCCCCEEEEEEec
Q 018144 217 DEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 217 dg~~l~v~~t~~~~i~~~~~~ 237 (360)
||.++-+... .+.|+.|..+
T Consensus 458 ~G~~lAvgs~-d~~iyiy~Vs 477 (626)
T KOG2106|consen 458 DGAFLAVGSH-DNHIYIYRVS 477 (626)
T ss_pred CCCEEEEecC-CCeEEEEEEC
Confidence 9997766655 5667777665
No 116
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.45 E-value=0.97 Score=43.89 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=55.7
Q ss_pred cEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 127 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 127 gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.|+.++ .+| .+.+.. ..+ ....+++.+||+ |.++-.. ...-.|+.+|.++++.+.+.
T Consensus 229 ~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPDG~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 229 QLVVHDLRSGARKVVAS-FRG----HNGAPAFSPDGSRLAFASSK---------------DGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred EEEEEeCCCCceEEEec-CCC----ccCceeECCCCCEEEEEEec---------------CCcEEEEEEECCCCCeEeec
Confidence 377777 566 444432 222 123578899996 5554211 01125888998878776665
Q ss_pred CCCcCcceEEEecCCCEEEEEeCC--CCEEEEEEecC
Q 018144 204 DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKG 238 (360)
Q Consensus 204 ~~l~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g 238 (360)
.........+++|||+.++++... ...|+.++.++
T Consensus 289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 444455678999999977766532 34667766654
No 117
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.45 E-value=0.31 Score=45.52 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=64.2
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-E--eCCC-------------cCcceEE
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-V--ADGF-------------YFANGVA 213 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~--~~~l-------------~~pngia 213 (360)
-+.+|++.++|.+||++-... ......+|++++++ |++.. + ...+ ...-+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence 467889989999999875410 00012579999987 65522 2 1111 1223799
Q ss_pred EecCCCEEEEEeCCC---------------CEEEEEEecCC--cCcceeeeccC-----CCCCCceeEEcCCCCEEEEEe
Q 018144 214 LSRDEDYVVVCESWK---------------FRCRKYWLKGE--RKGKLETFAEN-----LPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 214 ~~~dg~~l~v~~t~~---------------~~i~~~~~~g~--~~~~~~~~~~~-----~~g~pd~i~~d~~G~lwva~~ 271 (360)
+++||+.||++.... -+|++|+.... ...++..-.+. ....+..+..-++|+++|-.-
T Consensus 154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 999999777764332 36778887531 12222221221 112355677777888888654
Q ss_pred c
Q 018144 272 K 272 (360)
Q Consensus 272 ~ 272 (360)
.
T Consensus 234 ~ 234 (326)
T PF13449_consen 234 D 234 (326)
T ss_pred c
Confidence 3
No 118
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.40 E-value=0.36 Score=45.06 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=44.0
Q ss_pred CcceEEEecCCCEEEEEeCCC------CEEEEEEecCCcCcceeeeccC-----------CCCCCceeEEcCCCC-EEEE
Q 018144 208 FANGVALSRDEDYVVVCESWK------FRCRKYWLKGERKGKLETFAEN-----------LPGAPDNINLAPDGT-FWIA 269 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~------~~i~~~~~~g~~~~~~~~~~~~-----------~~g~pd~i~~d~~G~-lwva 269 (360)
.+-||++.++|. +||++-.. .+|++|+.+|.......+-... ......++++.++|+ ||++
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 456899977776 88888788 8999999886543322111100 111245699999998 9999
Q ss_pred EecC
Q 018144 270 IIKL 273 (360)
Q Consensus 270 ~~~~ 273 (360)
+..+
T Consensus 165 ~E~~ 168 (326)
T PF13449_consen 165 MESP 168 (326)
T ss_pred ECcc
Confidence 8763
No 119
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.27 Score=44.30 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=76.6
Q ss_pred eEecCCCCCCcceEEEcCCCCEEEEe-cCCeEEEEE---CCeeeEE--------------------E--ecCCeEEEEeC
Q 018144 71 IKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ---DGTWVNW--------------------K--FIDSHLIICDN 124 (360)
Q Consensus 71 ~~~~~~~~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~---~g~~~~~--------------------~--~~~g~L~v~~~ 124 (360)
.++|...+..||+|.+-.+|..-+++ .++.++.+. ++.+... + ..+++||++-.
T Consensus 121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 45666668999999988777666666 677787776 3221111 0 12345777664
Q ss_pred CC--cEEEEc--CCCeEE-EeeccC---CccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 125 AN--GLHKVS--EDGVEN-FLSYVN---GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 125 ~~--gl~~~~--~~g~~~-l~~~~~---~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
.+ +|+.++ ++.... ...... +.-+..+.++.+++ .|+++| +.++ ...|..+|.+
T Consensus 201 r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV----------------LS~E-Sr~l~Evd~~ 263 (316)
T COG3204 201 RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV----------------LSDE-SRRLLEVDLS 263 (316)
T ss_pred cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE----------------EecC-CceEEEEecC
Confidence 43 566665 112111 100000 00112233344442 233333 2222 3467777765
Q ss_pred CCeE-EE---------EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 196 SNIT-TL---------VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 196 tg~~-~~---------~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
|++ .. +....+++.||+.+.+|. ||+++-- +..++|..
T Consensus 264 -G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEP-nlfy~F~~ 311 (316)
T COG3204 264 -GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEP-NLFYRFTP 311 (316)
T ss_pred -CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecC-Ccceeccc
Confidence 443 22 112456789999999998 5555442 45777764
No 120
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.34 E-value=0.17 Score=44.30 Aligned_cols=119 Identities=12% Similarity=0.131 Sum_probs=69.5
Q ss_pred CcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE
Q 018144 126 NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 202 (360)
Q Consensus 126 ~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~ 202 (360)
+.+...| .+| ++.+... ..++.+-+..+|+|..+- ..++|..+|+++-.+-.-
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia------------------~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIA------------------YGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred CceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEe------------------cCceeEEeccccccceee
Confidence 4555566 677 4444221 246778889999865431 134677788764332221
Q ss_pred eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 203 ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 203 ~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
.+--...+...+.|+.. .||+.-....+++||.+... +...+....+|-...+.+.++|.+|.+-.
T Consensus 221 ~k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred ccCccccccccccCCCc-eEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccC
Confidence 12223345566888874 89998878899999986431 22233223445445566777777776543
No 121
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.34 E-value=1.1 Score=43.09 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=32.5
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+++...+||..+.+... +.+++-+-+|... .+......+....++.++.+|.+|++...
T Consensus 242 ~~v~~~~dG~~~~vg~~--G~~~~s~d~G~~~--W~~~~~~~~~~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 242 STVNRSPDGDYVAVSSR--GNFYLTWEPGQPY--WQPHNRASARRIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred eeEEEcCCCCEEEEECC--ccEEEecCCCCcc--eEEecCCCccceeeeeEcCCCCEEEEeCC
Confidence 34566788874444443 3466655444321 11111122233457778889999998765
No 122
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.31 E-value=0.69 Score=40.66 Aligned_cols=169 Identities=15% Similarity=0.145 Sum_probs=91.2
Q ss_pred CCcceEEEcCCCC-EEEEecCCeEEEEE-CC-e----------eeEE--EecCCeEEEEeCCCcEEEEc-CCC--eEEEe
Q 018144 79 NHPEDASMDKNGV-IYTATRDGWIKRLQ-DG-T----------WVNW--KFIDSHLIICDNANGLHKVS-EDG--VENFL 140 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~~~G~I~~~~-~g-~----------~~~~--~~~~g~L~v~~~~~gl~~~~-~~g--~~~l~ 140 (360)
..-..+.+..+|. +|.|++||.+...| .. . +..+ ....+.|+++|....+...| .+. ...+.
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 3345566666775 46677888666555 21 0 1111 12356799988766677777 433 33332
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe---CCCc----CcceEE
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFY----FANGVA 213 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~---~~l~----~pngia 213 (360)
.+. + .++..+++++||...++ ....|..|+++.-+++..... ..+. +.--..
T Consensus 164 Pe~-~---~~i~sl~v~~dgsml~a-----------------~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 164 PED-D---TSIQSLTVMPDGSMLAA-----------------ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL 222 (311)
T ss_pred CCC-C---cceeeEEEcCCCcEEEE-----------------ecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence 221 1 45778999999987774 233567777776433221111 1111 122345
Q ss_pred EecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 214 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 214 ~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++||+++|- +-+....+..++.++-.. .+...+...+-.=+.++..||.+.|...
T Consensus 223 lSPd~k~la-t~ssdktv~iwn~~~~~k--le~~l~gh~rWvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 223 LSPDVKYLA-TCSSDKTVKIWNTDDFFK--LELVLTGHQRWVWDCAFSADGEYLVTAS 277 (311)
T ss_pred ECCCCcEEE-eecCCceEEEEecCCcee--eEEEeecCCceEEeeeeccCccEEEecC
Confidence 899998554 444556777777665311 1111111112233567788887666543
No 123
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.24 E-value=0.57 Score=45.91 Aligned_cols=102 Identities=19% Similarity=0.258 Sum_probs=65.7
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcC-CCCeE-EEEeCCCcCcceEEEecCCCEEEEEeC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-SSNIT-TLVADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~-~tg~~-~~~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
..++++++.++|.+.++ +..+..|..+|. +.+.. +.+..-....+.++++++++ ++++.+
T Consensus 204 ~~v~~~~fs~d~~~l~s-----------------~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs 265 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLS-----------------GSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGS 265 (456)
T ss_pred cceeeeEECCCCcEEEE-----------------ecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-EEEEec
Confidence 46889999999986665 223455666665 43343 33433345678999999995 777877
Q ss_pred CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 227 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 227 ~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
..+.|..+++.+. ...+.+. .......++++.++|++.++..
T Consensus 266 ~D~tvriWd~~~~--~~~~~l~-~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 266 DDGTVRIWDVRTG--ECVRKLK-GHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred CCCcEEEEeccCC--eEEEeee-ccCCceEEEEECCCCCEEEEcC
Confidence 7778888887542 1222332 2223356678999998666554
No 124
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.13 E-value=1.8 Score=43.80 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=73.5
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
...+.++..+||.+.+| +..+|.|-.+|..+|-..+.. +......++.++..|+ .+++.+-
T Consensus 351 ~~i~~l~YSpDgq~iaT-----------------G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSL 412 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIAT-----------------GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSL 412 (893)
T ss_pred cceeeEEECCCCcEEEe-----------------ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeec
Confidence 45788899999999887 445788889998777555433 3445667899999998 6667777
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
.++|..+|++. ...++.|....|---..+++|+.|.+-++..
T Consensus 413 DGtVRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 413 DGTVRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred CCeEEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 88999999863 3455566433333345688899998877654
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.13 E-value=0.64 Score=47.75 Aligned_cols=156 Identities=12% Similarity=0.160 Sum_probs=85.6
Q ss_pred CCEEEEecCCeEEEEE--CCeee----EEE-------e-cCCeEEEEeCC-CcEEEEc-CCC-eEEEeeccCCccccccc
Q 018144 90 GVIYTATRDGWIKRLQ--DGTWV----NWK-------F-IDSHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFAN 152 (360)
Q Consensus 90 G~l~v~~~~G~I~~~~--~g~~~----~~~-------~-~~g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~n 152 (360)
+.+.+++.++.|.++. .+... .|. . .+|.+.++... .++-.++ .++ .+......++ .+-
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a----pVl 142 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA----PVL 142 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC----cee
Confidence 3566667888888887 33221 221 1 24444444333 4555555 444 2222222232 255
Q ss_pred cEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCc---------CcceEEEecCCCEEEE
Q 018144 153 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY---------FANGVALSRDEDYVVV 223 (360)
Q Consensus 153 ~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~---------~pngia~~~dg~~l~v 223 (360)
+|..+++|++..+ ...+|.|..||.+++.+....+++. .-+-++++|++..|.+
T Consensus 143 ~l~~~p~~~fLAv-----------------ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 143 QLSYDPKGNFLAV-----------------SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred eeeEcCCCCEEEE-----------------EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 7889999987764 3357889999988776655443321 1235789999665666
Q ss_pred EeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 224 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 224 ~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
.-. .+.|..|+.++-.. .+..-.+.....-..+.+++.|.+..
T Consensus 206 ~~~-d~~Vkvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 206 PPV-DNTVKVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred ecc-CCeEEEEccCCcee-heeecccccccceEEEEEcCCCcEEe
Confidence 654 46788898765321 11111111111134456677774433
No 126
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.98 E-value=0.21 Score=47.47 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=80.3
Q ss_pred EEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC---cCcceEEEecCCCEEEEEeCCCCEE
Q 018144 155 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF---YFANGVALSRDEDYVVVCESWKFRC 231 (360)
Q Consensus 155 ~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l---~~pngia~~~dg~~l~v~~t~~~~i 231 (360)
.++.+|++|+. ...|.|+.+|+++++........ ...++-.+..||+ +|+.+..+ .+
T Consensus 64 ~~~~dg~v~~~------------------~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g-~~ 123 (370)
T COG1520 64 PADGDGTVYVG------------------TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDG-KL 123 (370)
T ss_pred cEeeCCeEEEe------------------cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccc-eE
Confidence 36788999994 23568999999988754311111 2333333444886 88888754 78
Q ss_pred EEEEe-cCCcCcceeeeccCCCC--CCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCce
Q 018144 232 RKYWL-KGERKGKLETFAENLPG--APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 308 (360)
Q Consensus 232 ~~~~~-~g~~~~~~~~~~~~~~g--~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 308 (360)
++++. +|...-.. ..++ .-.+-.+-.+|.+|+.+.. +
T Consensus 124 y~ld~~~G~~~W~~-----~~~~~~~~~~~~v~~~~~v~~~s~~-----------------------------------g 163 (370)
T COG1520 124 YALDASTGTLVWSR-----NVGGSPYYASPPVVGDGTVYVGTDD-----------------------------------G 163 (370)
T ss_pred EEEECCCCcEEEEE-----ecCCCeEEecCcEEcCcEEEEecCC-----------------------------------C
Confidence 99998 44322111 1121 0112234557888888633 5
Q ss_pred EEEEECCC-CcEEEEEeCCCCCcccceeeEEEECCEEEEEeCC
Q 018144 309 HLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 350 (360)
Q Consensus 309 ~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~ 350 (360)
.++.++.+ |+....+..+.+............++.+|+++..
T Consensus 164 ~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~ 206 (370)
T COG1520 164 HLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG 206 (370)
T ss_pred eEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC
Confidence 89999986 9888776654321112222233567888888763
No 127
>PRK01029 tolB translocation protein TolB; Provisional
Probab=95.94 E-value=1.8 Score=42.08 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=42.7
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--CCEEEE--EEecCCcCcceeeeccCCCCCCceeEEcC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRK--YWLKGERKGKLETFAENLPGAPDNINLAP 262 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~--~~~i~~--~~~~g~~~~~~~~~~~~~~g~pd~i~~d~ 262 (360)
..|+.++.++|+.+.+...-......+++|||+.|.++... ...++. ++++....+....+.....+......+++
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC
Confidence 47999999888776654422233457899999878776632 234554 34432211222222211112223456677
Q ss_pred CCC
Q 018144 263 DGT 265 (360)
Q Consensus 263 ~G~ 265 (360)
||.
T Consensus 291 DG~ 293 (428)
T PRK01029 291 DGT 293 (428)
T ss_pred CCC
Confidence 775
No 128
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.93 E-value=0.32 Score=44.74 Aligned_cols=123 Identities=12% Similarity=0.193 Sum_probs=72.6
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC------------cCcceEEEe--
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF------------YFANGVALS-- 215 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l------------~~pngia~~-- 215 (360)
.+|.|..+++|++.|| .+....|+++|+++|++.....+- ..-+...+-
T Consensus 145 HiNsV~~~~~G~yLiS-----------------~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~ 207 (299)
T PF14269_consen 145 HINSVDKDDDGDYLIS-----------------SRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNE 207 (299)
T ss_pred EeeeeeecCCccEEEE-----------------ecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEecc
Confidence 5789999999998886 233568999999999887654322 222233333
Q ss_pred --cCCCEEEEEeC----------CCCEEEEEEecCCcCcceeeeccC----CCCCCceeEEcCCCCEEEEEecCchhHHH
Q 018144 216 --RDEDYVVVCES----------WKFRCRKYWLKGERKGKLETFAEN----LPGAPDNINLAPDGTFWIAIIKLDARRMK 279 (360)
Q Consensus 216 --~dg~~l~v~~t----------~~~~i~~~~~~g~~~~~~~~~~~~----~~g~pd~i~~d~~G~lwva~~~~~~~~~~ 279 (360)
.++. +-+-+. +.++++.++...........+.+. ......++..=++||+.|+-..
T Consensus 208 ~~~~~~-IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~------- 279 (299)
T PF14269_consen 208 SNDDGT-ISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN------- 279 (299)
T ss_pred CCCCCE-EEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC-------
Confidence 2332 333332 345677777653322222222200 1112334555567888888765
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEe
Q 018144 280 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV 324 (360)
Q Consensus 280 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ 324 (360)
.+.+.+++++|+++..++
T Consensus 280 ---------------------------~g~~~E~~~~G~vv~~~~ 297 (299)
T PF14269_consen 280 ---------------------------NGRISEFTPDGEVVWEAQ 297 (299)
T ss_pred ---------------------------CceEEEECCCCCEEEEEE
Confidence 478999999999876654
No 129
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=95.92 E-value=1.2 Score=39.83 Aligned_cols=181 Identities=15% Similarity=0.175 Sum_probs=107.8
Q ss_pred CCeEEEEeCCCcEE-EEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 116 DSHLIICDNANGLH-KVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 116 ~g~L~v~~~~~gl~-~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
+|...++....|.+ ..| .+| .+.|.-.. ..+-.+++++|.+-.+| +.....+..
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~-----~dVlsva~s~dn~qivS-----------------GSrDkTikl 131 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHT-----KDVLSVAFSTDNRQIVS-----------------GSRDKTIKL 131 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecC-----CceEEEEecCCCceeec-----------------CCCcceeee
Confidence 55555444333444 445 565 33332111 23567889999887786 334456777
Q ss_pred EcCCCCeEEEEeCC--CcCcceEEEecCCCEEEEEeCCCCEEEE-EEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 192 YDPSSNITTLVADG--FYFANGVALSRDEDYVVVCESWKFRCRK-YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 192 ~d~~tg~~~~~~~~--l~~pngia~~~dg~~l~v~~t~~~~i~~-~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
+|..++..-...++ -...+.+.|+|.....++...+-.+..+ +++++-+.. ..+. ...++.+-+.+.+||.+-.
T Consensus 132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~--~~~~-gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR--TTFI-GHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred eeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh--hccc-cccccEEEEEECCCCCEEe
Confidence 77653222122222 3457889999986435555554445544 444432221 1222 2345677788999999888
Q ss_pred EEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEECCEEEEE
Q 018144 269 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 347 (360)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylg 347 (360)
+-.. .+.++..|- +|+-+..+.. +..+.++.+...+.|+.
T Consensus 209 sGgk----------------------------------dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 209 SGGK----------------------------------DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLC 249 (315)
T ss_pred cCCC----------------------------------CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEe
Confidence 6333 355566663 5666665543 34577888888999999
Q ss_pred eCCCCeEEEEeCC
Q 018144 348 SLTSNFIGKVQLS 360 (360)
Q Consensus 348 s~~~~~i~~~~l~ 360 (360)
-..+..|.+++++
T Consensus 250 ~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 250 AATATSIKIWDLE 262 (315)
T ss_pred eccCCceEEEecc
Confidence 9999999988875
No 130
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.82 E-value=2.1 Score=41.98 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=66.9
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~ 227 (360)
..++.+++.++|++.++ +...+.|..+|..+++......+ -...+++++++|++.++.+ +.
T Consensus 247 ~~v~~~~f~p~g~~i~S-----------------gs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~ 308 (456)
T KOG0266|consen 247 TYVTSVAFSPDGNLLVS-----------------GSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SY 308 (456)
T ss_pred CceEEEEecCCCCEEEE-----------------ecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CC
Confidence 35789999999988886 33466788888887777654443 3466889999999855555 55
Q ss_pred CCEEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCC-EEEEEe
Q 018144 228 KFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGT-FWIAII 271 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~-lwva~~ 271 (360)
.+.|..+|.......-...+... .+..-..+.++++|. +|++..
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 77788888765432101111111 111125577788886 444443
No 131
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.74 E-value=3.3 Score=43.65 Aligned_cols=135 Identities=12% Similarity=0.057 Sum_probs=73.6
Q ss_pred cceEEEcCCCCEE-EEecCCeEEEEE-CC-----ee--------------eEEE--ecCC-eEEEEeCCCcEEEEc-CCC
Q 018144 81 PEDASMDKNGVIY-TATRDGWIKRLQ-DG-----TW--------------VNWK--FIDS-HLIICDNANGLHKVS-EDG 135 (360)
Q Consensus 81 Pe~i~~d~~G~l~-v~~~~G~I~~~~-~g-----~~--------------~~~~--~~~g-~L~v~~~~~gl~~~~-~~g 135 (360)
-.+++++++|.+. ++..+|.|..++ +. .. ..+. ...+ .|..++.++-+..++ .++
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~ 565 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence 3567888888765 445788887776 21 00 0011 1122 333333333344445 444
Q ss_pred --eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceE
Q 018144 136 --VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV 212 (360)
Q Consensus 136 --~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngi 212 (360)
+..+. ... ..+..+++.+ +|.+.+| +...+.|..+|..+++.............+
T Consensus 566 ~~~~~~~-~H~----~~V~~l~~~p~~~~~L~S-----------------gs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v 623 (793)
T PLN00181 566 QLVTEMK-EHE----KRVWSIDYSSADPTLLAS-----------------GSDDGSVKLWSINQGVSIGTIKTKANICCV 623 (793)
T ss_pred eEEEEec-CCC----CCEEEEEEcCCCCCEEEE-----------------EcCCCEEEEEECCCCcEEEEEecCCCeEEE
Confidence 22221 111 2467888885 6777775 233567888887766543332222344566
Q ss_pred EEe-cCCCEEEEEeCCCCEEEEEEecC
Q 018144 213 ALS-RDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 213 a~~-~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
.+. +++. ++++.+..+.|..|++..
T Consensus 624 ~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 624 QFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 674 4566 445555667899998753
No 132
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=95.63 E-value=1.1 Score=38.36 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=61.2
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 227 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~-- 227 (360)
+.+++..|+|+ +.+.. +.....+..||.+...+..+. -...|.|.++|+|+++.++..+
T Consensus 62 I~~~~WsP~g~~favi~----------------g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~ 123 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIY----------------GSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNL 123 (194)
T ss_pred eEEEEECcCCCEEEEEE----------------ccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCC
Confidence 78899999996 43431 111235777777633333332 3456889999999988888754
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+.|..+|.+. .+.+..........+..+++|+..++...
T Consensus 124 ~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 124 NGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 34577777642 22222222223567888999987776543
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.56 E-value=0.44 Score=45.77 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=81.8
Q ss_pred ccEEEEEcCCCCeEEEEeCCC--cCc--ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCce---e
Q 018144 186 HGQLLKYDPSSNITTLVADGF--YFA--NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN---I 258 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l--~~p--ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~---i 258 (360)
...|-.+|..+-..+. ...+ ..| ..+++++|.+.. ++-...+.|.++|+..+ ++...+.|++|| |
T Consensus 486 astlsiWDLAapTpri-kaeltssapaCyALa~spDakvc-FsccsdGnI~vwDLhnq------~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRI-KAELTSSAPACYALAISPDAKVC-FSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCI 557 (705)
T ss_pred cceeeeeeccCCCcch-hhhcCCcchhhhhhhcCCcccee-eeeccCCcEEEEEcccc------eeeecccCCCCCceeE
Confidence 3456677765333322 1122 123 457789999844 44445567888998543 222356677777 5
Q ss_pred EEcCCC-CEEEEEecCchhHHHHhhcchhHHH----HHHhC---CccccccccCCCceEEEEECCCCcEEEEEeCCCCCc
Q 018144 259 NLAPDG-TFWIAIIKLDARRMKILNSSKLIKH----VLAAY---PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQL 330 (360)
Q Consensus 259 ~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~----~~~~~---~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~ 330 (360)
.+..+| +||.+-.....+++|+-..+....+ .|++| |. -.|+-.....+.|..+...+.....++..+
T Consensus 558 dis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~-~dWlavGMens~vevlh~skp~kyqlhlhe--- 633 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPT-GDWLAVGMENSNVEVLHTSKPEKYQLHLHE--- 633 (705)
T ss_pred EecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCC-ccceeeecccCcEEEEecCCccceeecccc---
Confidence 567889 7999977766667776544433222 12222 11 112211222233333333333222222211
Q ss_pred ccceeeEEEEC-CEEEEEeCCCCeEEE
Q 018144 331 MSFVTSGLQVD-NHLYVISLTSNFIGK 356 (360)
Q Consensus 331 ~~~~t~~~~~~-g~Lylgs~~~~~i~~ 356 (360)
+.+-++.+.- |+.|+.+=..|++..
T Consensus 634 -ScVLSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 634 -SCVLSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred -cEEEEEEecccCceeeecCchhhhhh
Confidence 2344555554 777777666666543
No 134
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=1.8 Score=39.11 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=85.3
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC---CCeEEEEe---CCCcCcceEEEecCCCEEEEE
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS---SNITTLVA---DGFYFANGVALSRDEDYVVVC 224 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~---tg~~~~~~---~~l~~pngia~~~dg~~l~v~ 224 (360)
..-.+.|++|-++.+- ...+.|-.||.. .|-.+.+. .....-+.+.+++||+.++++
T Consensus 143 ~pi~AfDp~GLifA~~-----------------~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 143 RPIAAFDPEGLIFALA-----------------NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred CcceeECCCCcEEEEe-----------------cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE
Confidence 3456889999777642 223356666652 12222222 124456799999999988888
Q ss_pred eCCCCEEEEEEe-cCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccccccc
Q 018144 225 ESWKFRCRKYWL-KGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 303 (360)
Q Consensus 225 ~t~~~~i~~~~~-~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 303 (360)
... +.++.+|. +|.....++... +....|-..++.+||.+.++...
T Consensus 206 T~~-s~~~~lDAf~G~~~~tfs~~~-~~~~~~~~a~ftPds~Fvl~gs~------------------------------- 252 (311)
T KOG1446|consen 206 TNA-SFIYLLDAFDGTVKSTFSGYP-NAGNLPLSATFTPDSKFVLSGSD------------------------------- 252 (311)
T ss_pred eCC-CcEEEEEccCCcEeeeEeecc-CCCCcceeEEECCCCcEEEEecC-------------------------------
Confidence 764 56777764 444333333332 22235666778899988887765
Q ss_pred CCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCCC
Q 018144 304 LGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSN 352 (360)
Q Consensus 304 ~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~ 352 (360)
.|.|..++ ..|+.+..+..+.+. .++.+.+...+.-+.+...+
T Consensus 253 ---dg~i~vw~~~tg~~v~~~~~~~~~---~~~~~~fnP~~~mf~sa~s~ 296 (311)
T KOG1446|consen 253 ---DGTIHVWNLETGKKVAVLRGPNGG---PVSCVRFNPRYAMFVSASSN 296 (311)
T ss_pred ---CCcEEEEEcCCCcEeeEecCCCCC---CccccccCCceeeeeecCce
Confidence 24555555 478888888776432 34444444455444444333
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.40 E-value=2.6 Score=40.21 Aligned_cols=146 Identities=13% Similarity=0.147 Sum_probs=82.9
Q ss_pred ccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC--c--CcceEEEecCCCEEEEEeC
Q 018144 152 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--Y--FANGVALSRDEDYVVVCES 226 (360)
Q Consensus 152 n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l--~--~pngia~~~dg~~l~v~~t 226 (360)
...++.++|. ..++-+. .-.+|.||..+.+++.+.... . .-.-..+++|++++.+...
T Consensus 261 ~~a~f~p~G~~~i~~s~r-----------------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~ 323 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGR-----------------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN 323 (514)
T ss_pred ceeeecCCCceEEEeccc-----------------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc
Confidence 4457788897 5554222 235888999888776653221 1 2234678899986655544
Q ss_pred CCCEEEEEEecCC-cCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccC
Q 018144 227 WKFRCRKYWLKGE-RKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 304 (360)
Q Consensus 227 ~~~~i~~~~~~g~-~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 304 (360)
.+.|..+..... .++. + ..+|...+++++++|. ||+...
T Consensus 324 -~G~I~lLhakT~eli~s---~--KieG~v~~~~fsSdsk~l~~~~~--------------------------------- 364 (514)
T KOG2055|consen 324 -NGHIHLLHAKTKELITS---F--KIEGVVSDFTFSSDSKELLASGG--------------------------------- 364 (514)
T ss_pred -CceEEeehhhhhhhhhe---e--eeccEEeeEEEecCCcEEEEEcC---------------------------------
Confidence 456777664321 1221 2 2455677888999986 555543
Q ss_pred CCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEe
Q 018144 305 GGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 305 ~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~ 358 (360)
.|.|+.+|- .-.++..+.|..+. .-++++.. ++.++..+-....+-+++
T Consensus 365 --~GeV~v~nl~~~~~~~rf~D~G~v---~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 365 --TGEVYVWNLRQNSCLHRFVDDGSV---HGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred --CceEEEEecCCcceEEEEeecCcc---ceeeeeecCCCceEEeccCcceEEEec
Confidence 367888874 34677777775542 23334332 444333333344444443
No 136
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.28 E-value=0.96 Score=41.12 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=45.8
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC---CcCcceEEEecC-CCEEEEE
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFANGVALSRD-EDYVVVC 224 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~---l~~pngia~~~d-g~~l~v~ 224 (360)
.++|...+.+||+-.++-++ +|.|-.++.+|++....... -...|.+-+-|. -..++||
T Consensus 349 Syvn~a~ft~dG~~iisaSs-----------------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASS-----------------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred ccccceEEcCCCCeEEEecC-----------------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 46888889999987776443 57788888766554222111 112345554443 3467788
Q ss_pred eCCCCEEEEEEecCC
Q 018144 225 ESWKFRCRKYWLKGE 239 (360)
Q Consensus 225 ~t~~~~i~~~~~~g~ 239 (360)
+.+ +.|+..++.|+
T Consensus 412 Nrs-ntv~imn~qGQ 425 (508)
T KOG0275|consen 412 NRS-NTVYIMNMQGQ 425 (508)
T ss_pred cCC-CeEEEEeccce
Confidence 764 67888888775
No 137
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.24 E-value=3 Score=40.01 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=80.1
Q ss_pred CCCEEEEe-cCCeEEEEE-C-C--eee--EE-------------------EecCCeEEEEeCC-------CcEEEEcCCC
Q 018144 89 NGVIYTAT-RDGWIKRLQ-D-G--TWV--NW-------------------KFIDSHLIICDNA-------NGLHKVSEDG 135 (360)
Q Consensus 89 ~G~l~v~~-~~G~I~~~~-~-g--~~~--~~-------------------~~~~g~L~v~~~~-------~gl~~~~~~g 135 (360)
...||+.. ..++||.+| . . +.+ .+ ...+|+++|+..+ .|++.+|.+.
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 56788888 889999999 2 2 111 11 1236778886532 3677887443
Q ss_pred eEEEee-ccCCccccccccEEEcCCCcEEEEeCCCCCCCcc------ceecccccCCccEEEEEcCCCCeEEEEeCC---
Q 018144 136 VENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE------YCLDILEGKPHGQLLKYDPSSNITTLVADG--- 205 (360)
Q Consensus 136 ~~~l~~-~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~------~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--- 205 (360)
+++... ..+.....+-+|+...+..++-||.. |+... ...++..+....+|..+|-.+.+..+..+-
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 222211 11222235678888889889888753 22211 112333344456799999988877664421
Q ss_pred CcCcceEEE--ecCCCEEEEEeCCCCEEEEEEec-CCcCcceeeecc------------CC-------CCCCceeEEcCC
Q 018144 206 FYFANGVAL--SRDEDYVVVCESWKFRCRKYWLK-GERKGKLETFAE------------NL-------PGAPDNINLAPD 263 (360)
Q Consensus 206 l~~pngia~--~~dg~~l~v~~t~~~~i~~~~~~-g~~~~~~~~~~~------------~~-------~g~pd~i~~d~~ 263 (360)
...|--|.+ +|+...=||.-.....|++|..+ +.. -..+..++ .. |+++..|.++-|
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 122333443 34455555555556678887663 211 11111100 11 567889999877
Q ss_pred C-CEEEEEec
Q 018144 264 G-TFWIAIIK 272 (360)
Q Consensus 264 G-~lwva~~~ 272 (360)
. .|||+++.
T Consensus 323 DrfLYvs~W~ 332 (461)
T PF05694_consen 323 DRFLYVSNWL 332 (461)
T ss_dssp S-EEEEEETT
T ss_pred CCEEEEEccc
Confidence 7 59999997
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.24 E-value=2.5 Score=42.14 Aligned_cols=136 Identities=19% Similarity=0.226 Sum_probs=76.7
Q ss_pred EEcCCCCEE-EEe-cCCeEEEEE-CCeeeE-----------------EEecCCeEEEEe-CCCcEEEEc-CCC-eEEEee
Q 018144 85 SMDKNGVIY-TAT-RDGWIKRLQ-DGTWVN-----------------WKFIDSHLIICD-NANGLHKVS-EDG-VENFLS 141 (360)
Q Consensus 85 ~~d~~G~l~-v~~-~~G~I~~~~-~g~~~~-----------------~~~~~g~L~v~~-~~~gl~~~~-~~g-~~~l~~ 141 (360)
++.++|++. +++ .+=+|||++ ++.+.. +...+..++++. ...-+..++ .+. .+.+..
T Consensus 389 aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~ 468 (691)
T KOG2048|consen 389 AISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKS 468 (691)
T ss_pred ccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhc
Confidence 445677765 444 566888888 553321 112233444444 223455555 333 333322
Q ss_pred ccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcC-cceEEEec-CCC
Q 018144 142 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSR-DED 219 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~-pngia~~~-dg~ 219 (360)
......-..+.-|++.++|+-..+ ....|.|+.|+.++++.+.+...+.. ...+++.| +.+
T Consensus 469 ~~~~~~~~~I~~l~~SsdG~yiaa-----------------~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~ 531 (691)
T KOG2048|consen 469 IQSQAKCPSISRLVVSSDGNYIAA-----------------ISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRN 531 (691)
T ss_pred cccccCCCcceeEEEcCCCCEEEE-----------------EeccceEEEEEcccceeecchhccCcceeeeeccccccC
Confidence 211122346778899999973332 11357899999998888776544433 23455664 444
Q ss_pred EEEEEeCCCCEEEEEEecC
Q 018144 220 YVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g 238 (360)
.+.++.+ ++.++-|+++.
T Consensus 532 ~lvvats-~nQv~efdi~~ 549 (691)
T KOG2048|consen 532 RLVVATS-NNQVFEFDIEA 549 (691)
T ss_pred cEEEEec-CCeEEEEecch
Confidence 5666655 67899999853
No 139
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.17 E-value=1.6 Score=43.81 Aligned_cols=171 Identities=12% Similarity=0.077 Sum_probs=95.2
Q ss_pred CCcceEEEcCCC-CEEEEe---cC-CeEEEEE-CC--eeeEE--------EecCCeEEEEeCCCcEEEEc-CC----CeE
Q 018144 79 NHPEDASMDKNG-VIYTAT---RD-GWIKRLQ-DG--TWVNW--------KFIDSHLIICDNANGLHKVS-ED----GVE 137 (360)
Q Consensus 79 ~~Pe~i~~d~~G-~l~v~~---~~-G~I~~~~-~g--~~~~~--------~~~~g~L~v~~~~~gl~~~~-~~----g~~ 137 (360)
..|..+.++++| .+|+++ .. +.+..++ +. ....+ ...+...||+ .+.+..+| .+ +..
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~ 312 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSA 312 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcc
Confidence 388889999866 567775 22 3444554 11 11111 1123346662 45688888 55 311
Q ss_pred EEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe------------EEEEeC
Q 018144 138 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI------------TTLVAD 204 (360)
Q Consensus 138 ~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~------------~~~~~~ 204 (360)
.+..-..+ ..|.++.+++||. +|++... .+.+-.||.++.+ +.....
T Consensus 313 v~~yIPVG---KsPHGV~vSPDGkylyVankl-----------------S~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 313 LTRYVPVP---KNPHGVNTSPDGKYFIANGKL-----------------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred eEEEEECC---CCccceEECCCCCEEEEeCCC-----------------CCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 21111112 4699999999995 7776432 3446666654322 111112
Q ss_pred CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC---cCcc-eeeeccC-----CCC---CCceeEEcCCCCEEEEEec
Q 018144 205 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE---RKGK-LETFAEN-----LPG---APDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 205 ~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~---~~~~-~~~~~~~-----~~g---~pd~i~~d~~G~lwva~~~ 272 (360)
-...|-..+++.+|+ .|++-.....|.+++++.. ..+. ...+.+. .+| .+-+-..+++|...+++..
T Consensus 373 vGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 373 LGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred cCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 234688899999996 9999888888999987531 0000 0111111 222 1223334889988888765
No 140
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=95.12 E-value=0.18 Score=45.51 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=61.5
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE---EeCCCcCcceEEEecCCCEEEEEeC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~---~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
.+|++.+.|...|.++- ...+.|-.+|-..-..+. +.........|.+.|.|++|.+..
T Consensus 174 evn~l~FHPre~ILiS~-----------------srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT- 235 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISG-----------------SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT- 235 (430)
T ss_pred cccceeecchhheEEec-----------------cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-
Confidence 47888999998998863 234556666653222211 222334457899999999776664
Q ss_pred CCCEEEEEEecCCcCcceeeeccCC-----CCCCceeEEcCCCCEEEEEec
Q 018144 227 WKFRCRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 227 ~~~~i~~~~~~g~~~~~~~~~~~~~-----~g~pd~i~~d~~G~lwva~~~ 272 (360)
....+..||++ +++.|.... .+....+...+.|++||....
T Consensus 236 dHp~~rlYdv~-----T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 236 DHPTLRLYDVN-----TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred CCCceeEEecc-----ceeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence 45566777764 344443221 223344667899999997665
No 141
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.07 E-value=2.6 Score=38.36 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=59.2
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
.+++|++.|.|.|-++-.. ++.+-.+|.-+|+.-....--..+.-+.+++.|+..++... +
T Consensus 129 ~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~--~ 189 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR--N 189 (362)
T ss_pred ccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec--c
Confidence 4899999999999887543 23344455544544322222234555889999997777754 5
Q ss_pred EEEEEEecCCcCcceeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 018144 230 RCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 230 ~i~~~~~~g~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+|-.|.++..+ ++... .+..+-++.++..+.+.||...
T Consensus 190 ~i~i~q~d~A~-----v~~~i~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 190 KIDIYQLDNAS-----VFREIENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred EEEEEecccHh-----HhhhhhccccceeeeecCCceEEEecCC
Confidence 67777654322 22111 2223456666777778877654
No 142
>PTZ00421 coronin; Provisional
Probab=95.06 E-value=4 Score=40.43 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=57.2
Q ss_pred ccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE--------EEEeCCCcCcceEEEecCCCE
Q 018144 150 FANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--------TLVADGFYFANGVALSRDEDY 220 (360)
Q Consensus 150 ~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~--------~~~~~~l~~pngia~~~dg~~ 220 (360)
.++++++++ ++++.+| +..++.|..+|..++.. ..+.........++++|++..
T Consensus 77 ~V~~v~fsP~d~~~LaS-----------------gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~ 139 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFT-----------------ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN 139 (493)
T ss_pred CEEEEEEcCCCCCEEEE-----------------EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC
Confidence 467888887 6766664 22356666666543321 112112234567899998644
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++++....+.|..+|++... ....+. ........+.+.++|++.++..
T Consensus 140 iLaSgs~DgtVrIWDl~tg~--~~~~l~-~h~~~V~sla~spdG~lLatgs 187 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGK--AVEVIK-CHSDQITSLEWNLDGSLLCTTS 187 (493)
T ss_pred EEEEEeCCCEEEEEECCCCe--EEEEEc-CCCCceEEEEEECCCCEEEEec
Confidence 55565556778888875422 112221 2222345677788887665543
No 143
>PTZ00420 coronin; Provisional
Probab=95.05 E-value=4.4 Score=40.81 Aligned_cols=102 Identities=8% Similarity=0.066 Sum_probs=59.4
Q ss_pred ccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE---------EEEeCCCcCcceEEEecCCC
Q 018144 150 FANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT---------TLVADGFYFANGVALSRDED 219 (360)
Q Consensus 150 ~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~---------~~~~~~l~~pngia~~~dg~ 219 (360)
.+.++++.++ +++.+| +...+.|..+|..++.. ..+.......+.++++|++.
T Consensus 76 ~V~~lafsP~~~~lLAS-----------------gS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~ 138 (568)
T PTZ00420 76 SILDLQFNPCFSEILAS-----------------GSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY 138 (568)
T ss_pred CEEEEEEcCCCCCEEEE-----------------EeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC
Confidence 4667778775 566654 22345666666543211 11111123467899999987
Q ss_pred EEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 220 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 220 ~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.++++....+.|..+|+..... ...+ ..+.....+.++++|++.++...
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~--~~~i--~~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKR--AFQI--NMPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcE--EEEE--ecCCcEEEEEECCCCCEEEEEec
Confidence 6666666667788888754321 1111 12234567888999998876543
No 144
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=94.98 E-value=1.2 Score=43.04 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=34.8
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC----CCceeEEcCCCCEEE
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG----APDNINLAPDGTFWI 268 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g----~pd~i~~d~~G~lwv 268 (360)
+..+|.|+.+..+.+-+..+.+..++.+.. ..+.+++.....+ .|.-.+++++|++..
T Consensus 272 t~g~whP~~k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA 333 (641)
T KOG0772|consen 272 TCGCWHPDNKEEFLTCSYDGTLRIWDVNNT-KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA 333 (641)
T ss_pred eccccccCcccceEEecCCCcEEEEecCCc-hhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence 445677776666666666666666666543 3455666433211 356677899998733
No 145
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=2.7 Score=37.90 Aligned_cols=59 Identities=25% Similarity=0.190 Sum_probs=35.9
Q ss_pred EEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe---CCCcCcceEEEecCCCEEEEEeC
Q 018144 154 VVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 154 l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~---~~l~~pngia~~~dg~~l~v~~t 226 (360)
=++.+||. ||.|.... ....|-|-.||.. ..+.... +-.-.|.-+.+.+||+.+.+++-
T Consensus 119 Gvfs~dG~~LYATEndf-------------d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 119 GVFSPDGRLLYATENDF-------------DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cccCCCCcEEEeecCCC-------------CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 35889995 67765331 1123456667654 3333322 22346888999999998877754
No 146
>PRK01029 tolB translocation protein TolB; Provisional
Probab=94.80 E-value=4.3 Score=39.46 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=54.4
Q ss_pred ccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCC--CCeEEEEeCCCcCcceEEEecCCCEEEEEeCC-
Q 018144 152 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNITTLVADGFYFANGVALSRDEDYVVVCESW- 227 (360)
Q Consensus 152 n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~- 227 (360)
....+++||+ |+++... ...-.|+.++.+ +++.+.+..........+++|||+.++++...
T Consensus 284 ~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 3468899996 5554211 012257777653 23344443332334567899999988776543
Q ss_pred -CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC
Q 018144 228 -KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 265 (360)
Q Consensus 228 -~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~ 265 (360)
...|+.+++++.+ .+.+.. .++...+....+||+
T Consensus 349 g~~~I~v~dl~~g~---~~~Lt~-~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 349 GVRQICVYDLATGR---DYQLTT-SPENKESPSWAIDSL 383 (428)
T ss_pred CCcEEEEEECCCCC---eEEccC-CCCCccceEECCCCC
Confidence 3478899986543 233322 122345677888886
No 147
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=94.72 E-value=3 Score=37.34 Aligned_cols=167 Identities=11% Similarity=0.140 Sum_probs=88.4
Q ss_pred cceEEEcCCCCEEEEe-cCCeEEEEE--CCeee-EEE----------e-cCCeEEEEe-CCCcEEEEcCCC--eEEEeec
Q 018144 81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-NWK----------F-IDSHLIICD-NANGLHKVSEDG--VENFLSY 142 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~-~~~----------~-~~g~L~v~~-~~~gl~~~~~~g--~~~l~~~ 142 (360)
-++++..++|+..++. .|+.+...| .|+.. .|. + .+.+-.|.. .++-+...+--| .-.+...
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~ 145 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED 145 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC
Confidence 3455666788776655 777777677 44322 111 1 123333322 223333333212 1111111
Q ss_pred cCCccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCE
Q 018144 143 VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDY 220 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~ 220 (360)
+. -..++.+.+.|.. +.+|... ..++.|-.+|..+-++.... ......|-++++|||.
T Consensus 146 --~~-~~WVscvrfsP~~~~p~Ivs~----------------s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs- 205 (315)
T KOG0279|consen 146 --SH-REWVSCVRFSPNESNPIIVSA----------------SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS- 205 (315)
T ss_pred --CC-cCcEEEEEEcCCCCCcEEEEc----------------cCCceEEEEccCCcchhhccccccccEEEEEECCCCC-
Confidence 11 2577788888864 4444332 23556777887655554322 2345678899999997
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+..+.--.+.++-+|++..+ ....+. .......+++.++ ++|+....
T Consensus 206 lcasGgkdg~~~LwdL~~~k--~lysl~--a~~~v~sl~fspn-rywL~~at 252 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGK--NLYSLE--AFDIVNSLCFSPN-RYWLCAAT 252 (315)
T ss_pred EEecCCCCceEEEEEccCCc--eeEecc--CCCeEeeEEecCC-ceeEeecc
Confidence 76665555677888876422 122221 1112455777776 68886654
No 148
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.64 E-value=3.4 Score=37.67 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=53.0
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEE------cCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCcccccc
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINL------APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 301 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~------d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 301 (360)
.+-|-+|+++|.....+..-. .+. .|=+|++ .-.|.|.|+..+
T Consensus 221 ~G~VdvFd~~G~l~~r~as~g-~LN-aPWG~a~APa~FG~~sg~lLVGNFG----------------------------- 269 (336)
T TIGR03118 221 LGYVNVFTLNGQLLRRVASSG-RLN-APWGLAIAPESFGSLSGALLVGNFG----------------------------- 269 (336)
T ss_pred cceEEEEcCCCcEEEEeccCC-ccc-CCceeeeChhhhCCCCCCeEEeecC-----------------------------
Confidence 346777887775333221110 122 4778887 236789999988
Q ss_pred ccCCCceEEEEECC-CCcEEEEEeCCCCCcc--cceeeEEEEC-------CEEEEE
Q 018144 302 ITLGGGAHLIHVAE-DGTIIRNLVDPTGQLM--SFVTSGLQVD-------NHLYVI 347 (360)
Q Consensus 302 ~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~--~~~t~~~~~~-------g~Lylg 347 (360)
.|.|..||+ .|+.+-.+.+++|.++ ...-++.+.+ +.||++
T Consensus 270 -----DG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFa 320 (336)
T TIGR03118 270 -----DGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFT 320 (336)
T ss_pred -----CceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEE
Confidence 589999998 4888888888888633 2234444432 357775
No 149
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=94.55 E-value=1.2 Score=42.78 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=53.1
Q ss_pred EEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC
Q 018144 119 LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 196 (360)
Q Consensus 119 L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 196 (360)
+.+++....++.++ .+| .+.+-.... ..+.++++.++++ |++ |.+ .++--...|-.||..+
T Consensus 416 ~vvaNdr~el~vididngnv~~idkS~~----~lItdf~~~~nsr-~iA-----Yaf-------P~gy~tq~Iklydm~~ 478 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVRLIDKSEY----GLITDFDWHPNSR-WIA-----YAF-------PEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEEcCceEEEEEEecCCCeeEeccccc----ceeEEEEEcCCce-eEE-----Eec-------CcceeeeeEEEEecCC
Confidence 55555445677777 677 554422211 2355667777665 443 111 1222234567778776
Q ss_pred CeEEEEeCCCcCcceEEEecCCCEEEEEeC
Q 018144 197 NITTLVADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 197 g~~~~~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
++.-.+.+....-..-|+++|++.||.-..
T Consensus 479 ~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 479 GKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 666555444445556789999999998754
No 150
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.52 E-value=4.7 Score=38.70 Aligned_cols=108 Identities=9% Similarity=-0.043 Sum_probs=59.2
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCc--ceeeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKG--KLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS 284 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~--~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~ 284 (360)
.-.++.+.+|+. +|++... +.+++-.-.+..-. +....... ......++.+..++++|++...
T Consensus 282 ~l~~v~~~~dg~-l~l~g~~-G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~------------ 347 (398)
T PLN00033 282 RIQNMGWRADGG-LWLLTRG-GGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS------------ 347 (398)
T ss_pred ceeeeeEcCCCC-EEEEeCC-ceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC------------
Confidence 346778888887 5555443 45665443332110 12221111 1112455777888999998765
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCe
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNF 353 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~ 353 (360)
|.+++-...|+..+.....++. ......+.+. +++.|+.+..+--
T Consensus 348 -----------------------G~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 348 -----------------------GILLRSTDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred -----------------------CcEEEeCCCCcceeEccccCCC-CcceeEEEEcCCCceEEEeCCcEE
Confidence 4566655667765544322332 1234466654 5899999877653
No 151
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.47 E-value=2.4 Score=37.38 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=74.7
Q ss_pred CccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeE---Ec
Q 018144 185 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN---LA 261 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~---~d 261 (360)
..+.|-.+|-.||+...-..--..++.+.+++||+++-++.. ..|.-++.+ ..+..+.+ .+|.|+. +.
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g--ssV~Fwdak--sf~~lKs~-----k~P~nV~SASL~ 233 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG--SSVKFWDAK--SFGLLKSY-----KMPCNVESASLH 233 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC--ceeEEeccc--cccceeec-----cCcccccccccc
Confidence 345666777777765443333456788999999986655543 446555543 22222222 1455654 56
Q ss_pred CCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEEE
Q 018144 262 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV 340 (360)
Q Consensus 262 ~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~ 340 (360)
++.++||+-.. ...+++||- .|+.+..+.. |. +..+.++.+.
T Consensus 234 P~k~~fVaGge----------------------------------d~~~~kfDy~TgeEi~~~nk--gh-~gpVhcVrFS 276 (334)
T KOG0278|consen 234 PKKEFFVAGGE----------------------------------DFKVYKFDYNTGEEIGSYNK--GH-FGPVHCVRFS 276 (334)
T ss_pred CCCceEEecCc----------------------------------ceEEEEEeccCCceeeeccc--CC-CCceEEEEEC
Confidence 77789997655 467888884 4666666522 22 3456666665
Q ss_pred -CCEEEEEeCCCCeEEE
Q 018144 341 -DNHLYVISLTSNFIGK 356 (360)
Q Consensus 341 -~g~Lylgs~~~~~i~~ 356 (360)
+|.+|..+.....|..
T Consensus 277 PdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRL 293 (334)
T ss_pred CCCceeeccCCCceEEE
Confidence 4777766655555443
No 152
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.27 E-value=0.055 Score=29.31 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.3
Q ss_pred CcceEEEcCCCCEEEEec
Q 018144 80 HPEDASMDKNGVIYTATR 97 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~~ 97 (360)
.-.+|+.|++|+||+|+.
T Consensus 6 ~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp CEEEEEE-TTSCEEEEET
T ss_pred eEEEEEEcCCcCEEEEeC
Confidence 345899999999999985
No 153
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=94.19 E-value=0.97 Score=43.18 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=71.8
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
.+.++.+..+|.-++|-+. ...|-.+|.+||++..-...-..|+.+.+.||+..++++.....
T Consensus 260 ~Vrd~~~s~~g~~fLS~sf-----------------D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSASF-----------------DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDK 322 (503)
T ss_pred hhhhhhccccCCeeeeeec-----------------ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCC
Confidence 3567888889987776433 45677789999998776666678999999999966888888889
Q ss_pred EEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 230 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 230 ~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+|..+|+...++- ..+. ..-+....|.+=++|.-+|++..
T Consensus 323 ki~~wDiRs~kvv--qeYd-~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 323 KIRQWDIRSGKVV--QEYD-RHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred cEEEEeccchHHH--HHHH-hhhhheeeeEEccCCceEeeecc
Confidence 9999998643311 1111 12223445666666777777655
No 154
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.15 E-value=2.2 Score=43.57 Aligned_cols=165 Identities=14% Similarity=0.142 Sum_probs=82.6
Q ss_pred CcceEEEcCCCC-EEEEecCCeEEEEE--CCeee--------------EEEe-cCCeEEEEeCCCcEEEEc--CCCeEEE
Q 018144 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV--------------NWKF-IDSHLIICDNANGLHKVS--EDGVENF 139 (360)
Q Consensus 80 ~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~~--------------~~~~-~~g~L~v~~~~~gl~~~~--~~g~~~l 139 (360)
.-.+++++.=|+ .++|...|.|-+++ .|-.+ .++. .-+++.|+....|++.|- .++. .+
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~ 528 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LK 528 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-ee
Confidence 445677776454 56777999999998 55221 1111 134577777778888776 2221 11
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecCC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDE 218 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~dg 218 (360)
.+.--+ ..+..+.-...-.+.+. ....-.|..||..|.++..... .....+.+++++||
T Consensus 529 ~~l~l~---~~~~~iv~hr~s~l~a~-----------------~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 529 KSLRLG---SSITGIVYHRVSDLLAI-----------------ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG 588 (910)
T ss_pred eeeccC---CCcceeeeeehhhhhhh-----------------hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence 110001 11222211111111110 1112357778876555433222 23457889999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 219 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
++| ++......|..+|+-.. .-...+. .+..+.++.+.++|.+....
T Consensus 589 rWl-isasmD~tIr~wDlpt~--~lID~~~--vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 589 RWL-ISASMDSTIRTWDLPTG--TLIDGLL--VDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred cEE-EEeecCCcEEEEeccCc--ceeeeEe--cCCcceeeEECCCCCEEEEE
Confidence 855 44445567888887422 1122222 11124455555555544433
No 155
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.05 E-value=0.058 Score=29.23 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=13.2
Q ss_pred CceeEEcCCCCEEEEEe
Q 018144 255 PDNINLAPDGTFWIAII 271 (360)
Q Consensus 255 pd~i~~d~~G~lwva~~ 271 (360)
...|..|++|+||+++.
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 34588899999999985
No 156
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.02 E-value=0.55 Score=41.06 Aligned_cols=115 Identities=22% Similarity=0.244 Sum_probs=56.9
Q ss_pred chhcccceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE---CCe-------ee------------EEEecCCeEEE
Q 018144 64 ATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DGT-------WV------------NWKFIDSHLII 121 (360)
Q Consensus 64 ~~~l~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~---~g~-------~~------------~~~~~~g~L~v 121 (360)
++.+...++|+.+....=..|++|+.|.||.-+.+|.|+|.. ++. .+ .+...+|.||+
T Consensus 66 ~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~ 145 (229)
T PF14517_consen 66 NTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYA 145 (229)
T ss_dssp --HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEE
T ss_pred ccccccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEE
Confidence 344466688888733333489999999999999999999886 221 11 23345667777
Q ss_pred EeCCCcEEEEc-CCC--eEEE--eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC
Q 018144 122 CDNANGLHKVS-EDG--VENF--LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 196 (360)
Q Consensus 122 ~~~~~gl~~~~-~~g--~~~l--~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 196 (360)
-+.+..+++.. +++ -+.+ ...+.+........|...++|+||..+ .+|.|+|+.+.+
T Consensus 146 i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~------------------~~G~lyr~~~p~ 207 (229)
T PF14517_consen 146 ITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVK------------------SNGKLYRGRPPQ 207 (229)
T ss_dssp EETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-------------------ETTEEEEES---
T ss_pred EcCCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEe------------------cCCEEeccCCcc
Confidence 66444366553 221 1100 011111122335567788999999864 257899887654
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=93.99 E-value=4.8 Score=36.75 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=90.3
Q ss_pred cceEEEcCCCCEEEEe-cCCeEEEEE--CCee-eEEE-----------ecCCeEEEEeC-CCcEEEEc-CCC-eEEEeec
Q 018144 81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGTW-VNWK-----------FIDSHLIICDN-ANGLHKVS-EDG-VENFLSY 142 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~-~~~~-----------~~~g~L~v~~~-~~gl~~~~-~~g-~~~l~~~ 142 (360)
-.++++.++|+..+++ .+..|..+| .|.. ..+. ..+.+..|+.. ...-+.++ .++ -+.|+..
T Consensus 68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d 147 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD 147 (405)
T ss_pred eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC
Confidence 3578899999877665 677777777 5532 1121 12333343332 22222233 233 3334333
Q ss_pred cCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe--CCCcCcceEEEecCCCE
Q 018144 143 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDY 220 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~--~~l~~pngia~~~dg~~ 220 (360)
.++.....+....+|+.|+..++ ++..|.+..||..|-+...-. +.......|-++..|++
T Consensus 148 ~d~dln~sas~~~fdr~g~yIit-----------------GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~ 210 (405)
T KOG1273|consen 148 DDGDLNSSASHGVFDRRGKYIIT-----------------GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF 210 (405)
T ss_pred CccccccccccccccCCCCEEEE-----------------ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE
Confidence 33322223444467888865554 566789999998765443211 11234456778888874
Q ss_pred EEEEeCCCCEEEEEEecC----CcCcceee---eccCCCCC-CceeEEcCCCCEEEEEec
Q 018144 221 VVVCESWKFRCRKYWLKG----ERKGKLET---FAENLPGA-PDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g----~~~~~~~~---~~~~~~g~-pd~i~~d~~G~lwva~~~ 272 (360)
+ +.++...-|..|+.+. ++.+..+. +-+..... =.+++++.+|.+-+|...
T Consensus 211 l-iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 211 L-IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred E-EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence 4 5555544555676531 11222221 11101111 135788999977776654
No 158
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=93.81 E-value=3.2 Score=36.34 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=75.3
Q ss_pred hcccceEecCCCCCCcceEEEcCCCCEEEEecCCeEEEEE---CC-----------------eee-EEEecCCeEEEEeC
Q 018144 66 QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DG-----------------TWV-NWKFIDSHLIICDN 124 (360)
Q Consensus 66 ~l~~~~~~~~~~~~~Pe~i~~d~~G~l~v~~~~G~I~~~~---~g-----------------~~~-~~~~~~g~L~v~~~ 124 (360)
-+..+.+|+.+ ..+=..|+..++|.||.... +.+|+.. ++ .++ .+....|-||.-+.
T Consensus 22 ~~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~-~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~ 99 (229)
T PF14517_consen 22 WSDRAITIGSG-WNNFRDIAAGPNGRLYAIRN-DGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTP 99 (229)
T ss_dssp HHHHSEEEESS--TT-SEEEE-TTS-EEEEET-TEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEET
T ss_pred ccchhhhcCcc-ccccceEEEcCCceEEEEEC-CceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEecc
Confidence 35667788775 56677888889999998774 4788882 11 011 12345666776565
Q ss_pred CCcEEEEc--CCC-eEEE---eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE-cCCCC
Q 018144 125 ANGLHKVS--EDG-VENF---LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSSN 197 (360)
Q Consensus 125 ~~gl~~~~--~~g-~~~l---~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~tg 197 (360)
...+++.. .++ .... ...+.+..-+....|..+++|.||.-+ +.|++++. .|+.+
T Consensus 100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~------------------~dg~~~~~~~p~~~ 161 (229)
T PF14517_consen 100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT------------------PDGRLYRRYRPDGG 161 (229)
T ss_dssp T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE------------------TTE-EEEE---SST
T ss_pred ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEc------------------CCCceEEeCCCCCC
Confidence 44556655 222 1111 111111122345677889999999854 35678877 44322
Q ss_pred e-------EEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 198 I-------TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 198 ~-------~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
. ..+...+-....-|..++++. ||..++ ++.|+|+..
T Consensus 162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~-~G~lyr~~~ 205 (229)
T PF14517_consen 162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKS-NGKLYRGRP 205 (229)
T ss_dssp T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-E-TTEEEEES-
T ss_pred CCccccccceeccCCcccceEEeeCCCCc-EEEEec-CCEEeccCC
Confidence 1 111123334467788889986 777754 578888754
No 159
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.62 E-value=3.6 Score=38.18 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=82.7
Q ss_pred EEEEEcCCCCeEEEEeCC-CcCcceE-EEecCCCEEEEE---eCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC
Q 018144 188 QLLKYDPSSNITTLVADG-FYFANGV-ALSRDEDYVVVC---ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 262 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~-l~~pngi-a~~~dg~~l~v~---~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~ 262 (360)
.+|.||-++-++-...+. -..|+|+ |+++....-|++ .+..+.|..||... ......+. ...+-.-.+++++
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~-aH~~~lAalafs~ 183 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTIN-AHKGPLAALAFSP 183 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEE-ecCCceeEEEECC
Confidence 588888765544322222 2566765 455544322322 44567788888643 22222221 2334456788999
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC--CCCcEEEEEeCCCCCcccceeeEEEE
Q 018144 263 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDGTIIRNLVDPTGQLMSFVTSGLQV 340 (360)
Q Consensus 263 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~--~~g~~~~~~~~~~g~~~~~~t~~~~~ 340 (360)
+|++...... .|.|+|+- ++|+.+..|.. |.....+.++.++
T Consensus 184 ~G~llATASe----------------------------------KGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~Fs 227 (391)
T KOG2110|consen 184 DGTLLATASE----------------------------------KGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSFS 227 (391)
T ss_pred CCCEEEEecc----------------------------------CceEEEEEEcCCccEeeeeeC--CceeeEEEEEEEC
Confidence 9987765544 46777763 68988877764 5545667888887
Q ss_pred C-CEEEEEeCCCCeEEEEeCC
Q 018144 341 D-NHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 341 ~-g~Lylgs~~~~~i~~~~l~ 360 (360)
. ..+...+-....|-+++|+
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCCCeEEEecCCCeEEEEEec
Confidence 4 6666667788888888875
No 160
>PTZ00421 coronin; Provisional
Probab=93.49 E-value=8.7 Score=38.08 Aligned_cols=71 Identities=7% Similarity=-0.092 Sum_probs=47.1
Q ss_pred ccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCC
Q 018144 150 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 150 ~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~ 227 (360)
.+..+++.+++ ++.++ +..++.|..+|..+++......+ ....+.+++++||+ ++++...
T Consensus 127 ~V~~l~f~P~~~~iLaS-----------------gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~ 188 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLAS-----------------AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSK 188 (493)
T ss_pred cEEEEEeCcCCCCEEEE-----------------EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecC
Confidence 45677888765 55554 22356788888877765443332 33467899999998 4455555
Q ss_pred CCEEEEEEecC
Q 018144 228 KFRCRKYWLKG 238 (360)
Q Consensus 228 ~~~i~~~~~~g 238 (360)
.+.|..+|+..
T Consensus 189 Dg~IrIwD~rs 199 (493)
T PTZ00421 189 DKKLNIIDPRD 199 (493)
T ss_pred CCEEEEEECCC
Confidence 67888888753
No 161
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.42 E-value=2.2 Score=43.12 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=74.7
Q ss_pred CCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCC
Q 018144 184 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 263 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~ 263 (360)
..+.+|+..|.. .-.+.+...+.....+.++|+.. ...+.+....+..+|... -...++|. ...+-..-+++.+.
T Consensus 514 D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~--G~~VRiF~-GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 514 DQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST--GNSVRIFT-GHKGPVTALAFSPC 588 (707)
T ss_pred CceeeeeecccC-CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCC--CcEEEEec-CCCCceEEEEEcCC
Confidence 345578777753 44445555677778899999986 333444444555555432 23456664 23344566788888
Q ss_pred CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEE-C
Q 018144 264 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-D 341 (360)
Q Consensus 264 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~ 341 (360)
|...++... .+.|...| +.|+.+..+-...+ .+.++.+. +
T Consensus 589 Gr~LaSg~e----------------------------------d~~I~iWDl~~~~~v~~l~~Ht~----ti~SlsFS~d 630 (707)
T KOG0263|consen 589 GRYLASGDE----------------------------------DGLIKIWDLANGSLVKQLKGHTG----TIYSLSFSRD 630 (707)
T ss_pred CceEeeccc----------------------------------CCcEEEEEcCCCcchhhhhcccC----ceeEEEEecC
Confidence 854443322 23455555 35555544433332 35556554 5
Q ss_pred CEEEEEeCCCCeEEEEeC
Q 018144 342 NHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 342 g~Lylgs~~~~~i~~~~l 359 (360)
|.+.+.+-.++.|...++
T Consensus 631 g~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 631 GNVLASGGADNSVRLWDL 648 (707)
T ss_pred CCEEEecCCCCeEEEEEc
Confidence 666666666666666654
No 162
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=5.2 Score=34.51 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=69.8
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcceeeeccCCCCCCce-eE--EcC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPGAPDN-IN--LAP 262 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~~~~~g~pd~-i~--~d~ 262 (360)
|--+.||++|-+ .+..--..-.|-.+..|++.|+.++- +..+..-|++.- ...+..+-. .|.|-. +. .=-
T Consensus 111 gvaf~~d~~t~~--~lg~~~y~GeGWgLt~d~~~LimsdG-satL~frdP~tfa~~~~v~VT~---~g~pv~~LNELE~V 184 (262)
T COG3823 111 GVAFKYDADTLE--ELGRFSYEGEGWGLTSDDKNLIMSDG-SATLQFRDPKTFAELDTVQVTD---DGVPVSKLNELEWV 184 (262)
T ss_pred ceeEEEChHHhh--hhcccccCCcceeeecCCcceEeeCC-ceEEEecCHHHhhhcceEEEEE---CCeecccccceeee
Confidence 455788876432 22222223456667777776776664 455655554321 112222221 122211 11 112
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeC--------CCCCcccc
Q 018144 263 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVD--------PTGQLMSF 333 (360)
Q Consensus 263 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~--------~~g~~~~~ 333 (360)
+|.+|.-.+. ...|.+++|+ |+++..+.- +++...+.
T Consensus 185 dG~lyANVw~----------------------------------t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nv 230 (262)
T COG3823 185 DGELYANVWQ----------------------------------TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNV 230 (262)
T ss_pred ccEEEEeeee----------------------------------ecceEEEcCCCCcEEEEEEccCCchhcCcccccccc
Confidence 4666665554 2478999985 888776642 22222233
Q ss_pred eeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 334 VTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 334 ~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
..+++.. .+++|+.+..=+.+-.+++
T Consensus 231 lNGIA~~~~~~r~~iTGK~wp~lfEVk~ 258 (262)
T COG3823 231 LNGIAHDPQQDRFLITGKLWPLLFEVKL 258 (262)
T ss_pred ccceeecCcCCeEEEecCcCceeEEEEe
Confidence 3455554 3799999887776666554
No 163
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=93.14 E-value=7.9 Score=36.64 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=61.9
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~ 227 (360)
..+.++++.+||.+..|-.. ...|+|+ |..||+...+..+ .....+|+|+|+|- .+.+.+.
T Consensus 304 ~~v~~iaf~~DGSL~~tGGl---------------D~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~ 365 (459)
T KOG0272|consen 304 KGVFSIAFQPDGSLAATGGL---------------DSLGRVW--DLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSS 365 (459)
T ss_pred cccceeEecCCCceeeccCc---------------cchhhee--ecccCcEEEEecccccceeeEeECCCce-EEeecCC
Confidence 35789999999999886332 1234554 5556766655544 45668999999994 6666666
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+.+.++|+..... ..... ........+.+++++..++.+..
T Consensus 366 Dnt~kVWDLR~r~~--ly~ip-AH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSE--LYTIP-AHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred CCcEEEeeeccccc--ceecc-cccchhhheEecccCCeEEEEcc
Confidence 67676677643221 11111 12224567788874444444433
No 164
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=93.01 E-value=2.4 Score=40.57 Aligned_cols=132 Identities=12% Similarity=0.179 Sum_probs=74.1
Q ss_pred eEEE-EeCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEc
Q 018144 118 HLII-CDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 193 (360)
Q Consensus 118 ~L~v-~~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d 193 (360)
++++ +..+..|..+| ++| ++.+ +.-+..+++|.+-++|.=+|+.+- .+.+..++
T Consensus 313 n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe 370 (503)
T KOG0282|consen 313 NIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWE 370 (503)
T ss_pred cEEEEecCCCcEEEEeccchHHHHHH-----HhhhhheeeeEEccCCceEeeecc-----------------CccEEEEE
Confidence 4554 44445677777 665 2222 112346788888888877776432 23344444
Q ss_pred CCCCeEEEEe-C-CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcceeeecc-CCCCCCceeEEcCCCCEEEE
Q 018144 194 PSSNITTLVA-D-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAE-NLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 194 ~~tg~~~~~~-~-~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva 269 (360)
-.......+. . ....--.+++.|.++ ++.+.+..++|..|..... +....+.|.. ..+|++-.+.+.+||.+.++
T Consensus 371 ~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~S 449 (503)
T KOG0282|consen 371 NRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS 449 (503)
T ss_pred cCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence 3322221111 1 112223577889887 8889998899998876432 2222233322 24677778888888876665
Q ss_pred Eec
Q 018144 270 IIK 272 (360)
Q Consensus 270 ~~~ 272 (360)
-..
T Consensus 450 Gds 452 (503)
T KOG0282|consen 450 GDS 452 (503)
T ss_pred ecC
Confidence 443
No 165
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.00 E-value=0.44 Score=29.19 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcceEEEe
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFANGVALS 215 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pngia~~ 215 (360)
.+.|..+|+.+++..........|.+++++
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 468999999877765544445678888764
No 166
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=92.91 E-value=3.5 Score=40.54 Aligned_cols=168 Identities=24% Similarity=0.311 Sum_probs=81.7
Q ss_pred ceEEEcC-CCCEEEEecCCeEEEEE--CCeee-EEEecCCeEEEEeCC--CcEEEEc-CCC-eEEEe-------------
Q 018144 82 EDASMDK-NGVIYTATRDGWIKRLQ--DGTWV-NWKFIDSHLIICDNA--NGLHKVS-EDG-VENFL------------- 140 (360)
Q Consensus 82 e~i~~d~-~G~l~v~~~~G~I~~~~--~g~~~-~~~~~~g~L~v~~~~--~gl~~~~-~~g-~~~l~------------- 140 (360)
.+|+.+. +-.||++.....|||++ .|++- .+....+.||+++.. +||+... .+| ++.+-
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 3455553 55799888777899999 67543 344444555555533 3555444 344 33221
Q ss_pred eccC---C-ccccccccEEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCc-ceEE
Q 018144 141 SYVN---G-SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFA-NGVA 213 (360)
Q Consensus 141 ~~~~---~-~~~~~~n~l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~p-ngia 213 (360)
..++ + .....+..+.+..+| ++=| ++..|.++.||..+.+.-...+. ...| .-+.
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aV------------------Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAV------------------GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEe------------------eccCCcEEEEEcccCCceeecccCCccceeeec
Confidence 1111 1 122345556666555 3444 56678999999876554333221 2222 2233
Q ss_pred Eec--CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 214 LSR--DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 214 ~~~--dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+-+ +++.++-++. ++.++|-.. .+..-...+....+.|...+-..|-+++|.-.
T Consensus 279 ~~~~~~q~~v~S~Dk---~~~kiWd~~--~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 279 WQDTDQQNKVVSMDK---RILKIWDEC--TGKPMASIEPTSDLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred ccccCCCceEEecch---HHhhhcccc--cCCceeeccccCCcCceeeecCCceEEEecCC
Confidence 321 2334544433 466655321 11111222223333444444445666666654
No 167
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=92.83 E-value=7.1 Score=35.28 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=64.4
Q ss_pred cccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCCC
Q 018144 151 ANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
+..|.+.| +++.||+- .....-..+|...+...+.. ..-...|.+.+.|+|. -+++.+..
T Consensus 189 V~slsl~p~~~ntFvSg-----------------~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD 250 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSG-----------------GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDD 250 (343)
T ss_pred EEEEecCCCCCCeEEec-----------------ccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCC
Confidence 45667777 88999973 23444455665555544433 3345689999999996 77777777
Q ss_pred CEEEEEEecCCcCcceeeec-cCCCCCCceeEEcCCCCEEEEEec
Q 018144 229 FRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 229 ~~i~~~~~~g~~~~~~~~~~-~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.....||+... .+..+|. +........+++...|+|..+.+.
T Consensus 251 ~tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 251 ATCRLYDLRAD--QELAVYSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred ceeEEEeecCC--cEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence 77788887532 2233332 112223566889999998777554
No 168
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=92.78 E-value=0.47 Score=29.56 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=28.1
Q ss_pred CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEE-EEeCCCcCcceEEEec
Q 018144 160 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALSR 216 (360)
Q Consensus 160 G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~-~~~~~l~~pngia~~~ 216 (360)
|+||.||.+. .-.+.+.+.+....+ .+..++..|+||++++
T Consensus 1 ~~iYWtD~~~----------------~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQ----------------DPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTT----------------TEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCC----------------CcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 5789999762 126777766644433 3556799999999874
No 169
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=92.60 E-value=4.6 Score=35.85 Aligned_cols=83 Identities=25% Similarity=0.369 Sum_probs=46.4
Q ss_pred EEEEEcCCCCeEEEEeC-------CCcCcceEEEecCC---C-EEEEEeCCCCEEEEEEecCC---cCcce--eeeccCC
Q 018144 188 QLLKYDPSSNITTLVAD-------GFYFANGVALSRDE---D-YVVVCESWKFRCRKYWLKGE---RKGKL--ETFAENL 251 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~-------~l~~pngia~~~dg---~-~l~v~~t~~~~i~~~~~~g~---~~~~~--~~~~~~~ 251 (360)
.+|.+||+++.++.+.+ +...+.|+++..+. . .++|+.. .+.+..|.+-.+ +.+.. +.|. .
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv~~k~vR~fk--~ 203 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKVGTKLVRQFK--I 203 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC-CCceeEEEEEecCCceEcceeeEeee--c
Confidence 46888888777766543 35678899986543 3 3333333 345666665211 22221 2221 2
Q ss_pred CCCCceeEE-cCCCCEEEEEecC
Q 018144 252 PGAPDNINL-APDGTFWIAIIKL 273 (360)
Q Consensus 252 ~g~pd~i~~-d~~G~lwva~~~~ 273 (360)
+.--.|+.. |+-|.|||+....
T Consensus 204 ~tQTEG~VaDdEtG~LYIaeEdv 226 (364)
T COG4247 204 PTQTEGMVADDETGFLYIAEEDV 226 (364)
T ss_pred CCcccceeeccccceEEEeeccc
Confidence 223445665 5788999997663
No 170
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.54 E-value=9.7 Score=36.09 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=62.0
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCC-cCcceEEEecCCCEEEEEeCCC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGF-YFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l-~~pngia~~~dg~~l~v~~t~~ 228 (360)
+-.|...||.+-.+|-+. ..-+...|.+||...... .++ ..+...++.|||.. +|+.+..
T Consensus 272 V~yi~wSPDdryLlaCg~-----------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~d 333 (519)
T KOG0293|consen 272 VSYIMWSPDDRYLLACGF-----------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPD 333 (519)
T ss_pred eEEEEECCCCCeEEecCc-----------------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCC
Confidence 445677888876665432 234677788777664432 232 34567889999975 4555556
Q ss_pred CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 229 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 229 ~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
..+...+.+|...+..+-.. .| ....+++..||..-+.
T Consensus 334 r~i~~wdlDgn~~~~W~gvr--~~-~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 334 RTIIMWDLDGNILGNWEGVR--DP-KVHDLAITYDGKYVLL 371 (519)
T ss_pred CcEEEecCCcchhhcccccc--cc-eeEEEEEcCCCcEEEE
Confidence 78999999987655444322 12 2457888888864433
No 171
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=92.44 E-value=0.55 Score=29.26 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=29.7
Q ss_pred EEEEEeCCCC-EEEEEEecCCcCcceeeeccCCCCCCceeEEcC
Q 018144 220 YVVVCESWKF-RCRKYWLKGERKGKLETFAENLPGAPDNINLAP 262 (360)
Q Consensus 220 ~l~v~~t~~~-~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~ 262 (360)
.+|+++.... .|.+-+++|.. .+++....-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 5999999999 99999998843 3333333344799999984
No 172
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=92.42 E-value=3.7 Score=36.50 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=64.4
Q ss_pred EEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEE
Q 018144 188 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 267 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lw 267 (360)
.+..+|-..++.......-..-+-+.++|+|++..+.+- ...|.-++....+....+ ..+.....++...+++++
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-dD~it~id~r~~~~~~~~----~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-DDRITFIDARTYKIVNEE----QFKFEVNEISWNNSNDLF 162 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-cccEEEEEecccceeehh----cccceeeeeeecCCCCEE
Confidence 455566554554443333334456889999987766664 467887776432211111 122235567777777788
Q ss_pred EEEec-CchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEE
Q 018144 268 IAIIK-LDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR 321 (360)
Q Consensus 268 va~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~ 321 (360)
+.+.+ +... +..||.|+.+.. +.+....---+.|+|+|+.+.
T Consensus 163 flt~GlG~v~----ILsypsLkpv~s--------i~AH~snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 163 FLTNGLGCVE----ILSYPSLKPVQS--------IKAHPSNCICIEFDPDGRYFA 205 (313)
T ss_pred EEecCCceEE----EEeccccccccc--------cccCCcceEEEEECCCCceEe
Confidence 77766 2222 344555554422 111222223478899998765
No 173
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.31 E-value=7.6 Score=34.35 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=63.5
Q ss_pred ccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE--EeCCCcCcceEEEecCCCEEEEEeC
Q 018144 150 FANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 150 ~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~--~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
-+|.++..++ ++|+++|.+ |.|..+|........ +.+.......+++.+||+.+ ++-.
T Consensus 126 pVn~vvlhpnQteLis~dqs------------------g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml-~a~n 186 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQS------------------GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSML-AAAN 186 (311)
T ss_pred CcceEEecCCcceEEeecCC------------------CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEE-EEec
Confidence 4688888875 478887644 667788875443322 33445667889999999855 5555
Q ss_pred CCCEEEEEEecCC-cCcceeeecc--CCCCCCceeEEcCCCCEEEEEec
Q 018144 227 WKFRCRKYWLKGE-RKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 227 ~~~~i~~~~~~g~-~~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+.++++++++-+. .....+.... ...++.--..+.+++.+.++...
T Consensus 187 nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 5778888887542 2233332211 12234444667888776666544
No 174
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=92.27 E-value=3.4 Score=38.39 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=66.1
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
..+..|...+||.+|+|-+. ....+..+|++++....+. .++..-.-+.++|||+.++.+..
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~- 258 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC- 258 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc-
Confidence 45667777889999997442 2346888999988876665 45555556789999996665554
Q ss_pred CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 018144 228 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 272 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~ 272 (360)
.++++++...+. -+.+.+. ..+|....-+.+++|. |.++..+
T Consensus 259 -davfrlw~e~q~-wt~erw~-lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 259 -DAVFRLWQENQS-WTKERWI-LGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred -cceeeeehhccc-ceeccee-ccCCceeeeeecCCCCEEEEEEcC
Confidence 358888843321 2222332 2445566677788885 4444443
No 175
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=91.97 E-value=13 Score=36.28 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=60.9
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE--E----eCCCcCc
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--V----ADGFYFA 209 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~--~----~~~l~~p 209 (360)
.+++.+...+..--.+..-++++||.++.+ +..+|.|-.++..+..+.. . .......
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa-----------------gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I 367 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAA-----------------GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI 367 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhh-----------------cccCCceeeeecCCcccccceEeeeccCCCCce
Confidence 555544333321123455577889887442 3345666666642111111 1 1122345
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCC-CceeEEcCCCCEEEEEec
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~-pd~i~~d~~G~lwva~~~ 272 (360)
..|+|+.||+.| .+-...+.+..+++...+ .-..++......+ -.+.++.++..|.++-..
T Consensus 368 tsi~FS~dg~~L-lSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 368 TSISFSYDGNYL-LSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eEEEeccccchh-hhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 789999999844 555555667777764321 1111221111112 246788888887775443
No 176
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=91.86 E-value=10 Score=37.48 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=58.2
Q ss_pred EEEEeCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 119 LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 119 L~v~~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
||++..+.-+|+++ +.| +..+..... ..|.+.+.+-..|..+ ++..|.|-.+||.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~-----~lN~v~in~~hgLla~-----------------Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSG-----ELNVVSINEEHGLLAC-----------------GTEDGVVEFWDPR 205 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccc-----cceeeeecCccceEEe-----------------cccCceEEEecch
Confidence 88888888899999 788 455543321 3455555555444443 4445666677765
Q ss_pred CCeEEE-E-----------eCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 196 SNITTL-V-----------ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 196 tg~~~~-~-----------~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
+.+.-. + ......+..+.++.|| .-+.+.+..+.++.||+..
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEccc
Confidence 432211 1 0112335678888777 3445566678899999854
No 177
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.74 E-value=13 Score=35.73 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=46.7
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCc--ceEEEecCCCEEEEEeCCC----------CEEEEEEecCCcCcceeeeccCCCC
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFA--NGVALSRDEDYVVVCESWK----------FRCRKYWLKGERKGKLETFAENLPG 253 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~p--ngia~~~dg~~l~v~~t~~----------~~i~~~~~~g~~~~~~~~~~~~~~g 253 (360)
...|+.+|.++|+... +.+..+ .++++.+|++.+|.+.... .+|+++.+.........+|......
T Consensus 149 ~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~ 226 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP 226 (414)
T ss_dssp EEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT
T ss_pred eEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC
Confidence 3468889998886533 222222 2399999988887776433 3467777643322223455433222
Q ss_pred C-CceeEEcCCCCE-EEEEec
Q 018144 254 A-PDNINLAPDGTF-WIAIIK 272 (360)
Q Consensus 254 ~-pd~i~~d~~G~l-wva~~~ 272 (360)
. --++..+.+|++ .|....
T Consensus 227 ~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 227 FWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp TSEEEEEE-TTSSEEEEEEES
T ss_pred cEEEEEEecCcccEEEEEEEc
Confidence 2 235667888864 444433
No 178
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=91.74 E-value=11 Score=35.09 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=65.7
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe--EEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~--~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
..-+..+|||...|+ .+.+ +++++=..+.. .+....+-....+.+++|+|++|+++-.+.
T Consensus 241 ~slLkwSPdgd~lfa-----------------At~d-avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFA-----------------ATCD-AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred eeeEEEcCCCCEEEE-----------------eccc-ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC
Confidence 445678899987775 2333 34444322122 222333334677889999999999999988
Q ss_pred CEEEEEEecCCcC--------cceeeeccC-----------CCCCCceeEEcCCCCEEEEEecCch
Q 018144 229 FRCRKYWLKGERK--------GKLETFAEN-----------LPGAPDNINLAPDGTFWIAIIKLDA 275 (360)
Q Consensus 229 ~~i~~~~~~g~~~--------~~~~~~~~~-----------~~g~pd~i~~d~~G~lwva~~~~~~ 275 (360)
.+|++...+++.. ......++. .-|-+..++.|+.|...+......+
T Consensus 303 p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 303 PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 9999887664311 011122221 1234677999999987777776543
No 179
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.71 E-value=19 Score=37.70 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=34.8
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeEEE--------------------------------------ecCCeEEEEeCCCcE
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVNWK--------------------------------------FIDSHLIICDNANGL 128 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~~~--------------------------------------~~~g~L~v~~~~~gl 128 (360)
+|.||+++.++.|+.+| +|+.. |. ..+++||+++.+..+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~l-W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEK-WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEE-EEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 78999999999999999 67421 11 023478888888889
Q ss_pred EEEc-CCC
Q 018144 129 HKVS-EDG 135 (360)
Q Consensus 129 ~~~~-~~g 135 (360)
+.+| ++|
T Consensus 273 iALDA~TG 280 (764)
T TIGR03074 273 IALDADTG 280 (764)
T ss_pred EEEECCCC
Confidence 9999 778
No 180
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.64 E-value=13 Score=35.74 Aligned_cols=206 Identities=12% Similarity=0.146 Sum_probs=108.1
Q ss_pred CcceEEEcCCCCEEEEe-cCCeEEEEE-CCe--------------eeEEEecCCeEEEEeCCCcEEEEc--CCCeEEEee
Q 018144 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ-DGT--------------WVNWKFIDSHLIICDNANGLHKVS--EDGVENFLS 141 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~--------------~~~~~~~~g~L~v~~~~~gl~~~~--~~g~~~l~~ 141 (360)
.-.++.+-+||.|..+. ..|.|-.+| +.+ ...|...++.+++...+.++.++. .++.... +
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~-~ 148 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA-E 148 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE-E
Confidence 44566677789888655 778777777 331 122333567777776677777766 3442121 1
Q ss_pred ccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE--eCCCcCcceEEEecCC
Q 018144 142 YVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDE 218 (360)
Q Consensus 142 ~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~--~~~l~~pngia~~~dg 218 (360)
..+. -.++...++.+ +++|.+| +..+|.|-.||..+...... -.+. -...+.+-|.|
T Consensus 149 -l~~h-tDYVR~g~~~~~~~hivvt-----------------GsYDg~vrl~DtR~~~~~v~elnhg~-pVe~vl~lpsg 208 (487)
T KOG0310|consen 149 -LSGH-TDYVRCGDISPANDHIVVT-----------------GSYDGKVRLWDTRSLTSRVVELNHGC-PVESVLALPSG 208 (487)
T ss_pred -ecCC-cceeEeeccccCCCeEEEe-----------------cCCCceEEEEEeccCCceeEEecCCC-ceeeEEEcCCC
Confidence 1111 02344555544 4567786 33456666677643322221 1222 22345555666
Q ss_pred CEEEEEeCCCCEEEEEEec-CCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCc
Q 018144 219 DYVVVCESWKFRCRKYWLK-GERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPK 296 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~~~-g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~ 296 (360)
. ++++. +++.+..+|+- |.+.-. .. .+...-...+++..++. |+-+...
T Consensus 209 s-~iasA-gGn~vkVWDl~~G~qll~--~~-~~H~KtVTcL~l~s~~~rLlS~sLD------------------------ 259 (487)
T KOG0310|consen 209 S-LIASA-GGNSVKVWDLTTGGQLLT--SM-FNHNKTVTCLRLASDSTRLLSGSLD------------------------ 259 (487)
T ss_pred C-EEEEc-CCCeEEEEEecCCceehh--hh-hcccceEEEEEeecCCceEeecccc------------------------
Confidence 5 54444 45678888875 322110 00 11222356777777775 4444333
Q ss_pred cccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEE-ECCEEEEEeCC
Q 018144 297 LFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLT 350 (360)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~Lylgs~~ 350 (360)
+.|-.|+ .+-+++..+.-|.+. .+..+. ++..+++|--+
T Consensus 260 -----------~~VKVfd~t~~Kvv~s~~~~~pv----Lsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 260 -----------RHVKVFDTTNYKVVHSWKYPGPV----LSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred -----------cceEEEEccceEEEEeeecccce----eeEEecCCCceEEEeccc
Confidence 4566666 466777777665542 222233 34667777543
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.63 E-value=7.3 Score=39.17 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=45.5
Q ss_pred ccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEe
Q 018144 148 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCE 225 (360)
Q Consensus 148 ~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~ 225 (360)
...++++++.|||. +.++ ...+++.||++.|..-....+ -...+.+|++.||+ .+.+.
T Consensus 12 ~hci~d~afkPDGsqL~lA-------------------Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG 71 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILA-------------------AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASG 71 (1081)
T ss_pred ccchheeEECCCCceEEEe-------------------cCCEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccC
Confidence 35789999999995 5553 245899999988765443333 33578999999997 55554
Q ss_pred CCCCEEEEEE
Q 018144 226 SWKFRCRKYW 235 (360)
Q Consensus 226 t~~~~i~~~~ 235 (360)
.. .+...+|
T Consensus 72 ~a-DK~VI~W 80 (1081)
T KOG1538|consen 72 SA-DKSVIIW 80 (1081)
T ss_pred CC-ceeEEEe
Confidence 43 3444444
No 182
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.63 E-value=4.5 Score=42.14 Aligned_cols=141 Identities=14% Similarity=0.160 Sum_probs=82.9
Q ss_pred CCCCCcceEEEc-CCCCEEEEe--cCCeEEEEE--CCeee-EEEe------------------cCCeEEEEeCCCcEEEE
Q 018144 76 GSVNHPEDASMD-KNGVIYTAT--RDGWIKRLQ--DGTWV-NWKF------------------IDSHLIICDNANGLHKV 131 (360)
Q Consensus 76 ~~~~~Pe~i~~d-~~G~l~v~~--~~G~I~~~~--~g~~~-~~~~------------------~~g~L~v~~~~~gl~~~ 131 (360)
|....|..+... .+-++.+-+ ....||++| .|++. .|.. ....-++|-..++++++
T Consensus 478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred CcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEe
Confidence 334556665444 355666665 346789998 67542 2221 12346888888999999
Q ss_pred c-C-CCeEEEeecc-CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcC
Q 018144 132 S-E-DGVENFLSYV-NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 208 (360)
Q Consensus 132 ~-~-~g~~~l~~~~-~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~ 208 (360)
| + .|-+.+.... .-...+....++-+.+|+|-|+ ...|.|-.||.-+.+.+....++..
T Consensus 558 DpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavg------------------s~~G~IRLyd~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 558 DPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVG------------------SNKGDIRLYDRLGKRAKTALPGLGD 619 (794)
T ss_pred ccCCCCCceeeccccccccCCCceEEEecCCceEEEE------------------eCCCcEEeecccchhhhhcCCCCCC
Confidence 9 3 3411111110 0011123456788899999884 3467777788653344444456665
Q ss_pred c-ceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 209 A-NGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 209 p-ngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
| -||.++.||+ ++++.+.. -|..++.
T Consensus 620 pI~~iDvt~DGk-wilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 620 PIIGIDVTADGK-WILATCKT-YLLLIDT 646 (794)
T ss_pred CeeEEEecCCCc-EEEEeecc-eEEEEEE
Confidence 5 5899999998 55555544 4555553
No 183
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.24 E-value=8.6 Score=35.82 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=16.0
Q ss_pred CCCCEEEEecCCeEEEEE-CC
Q 018144 88 KNGVIYTATRDGWIKRLQ-DG 107 (360)
Q Consensus 88 ~~G~l~v~~~~G~I~~~~-~g 107 (360)
.++.+|+.+.+|.|+.++ .|
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg 214 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSG 214 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETT
T ss_pred CCCeEEEEecCCEEEEEeccC
Confidence 356788888999999998 55
No 184
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.13 E-value=14 Score=34.85 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCc-ceEEEecCCCEEEEEeCC----CCEEEEEEec-CCcCcceeeeccCCCCCCc-ee
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESW----KFRCRKYWLK-GERKGKLETFAENLPGAPD-NI 258 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~p-ngia~~~dg~~l~v~~t~----~~~i~~~~~~-g~~~~~~~~~~~~~~g~pd-~i 258 (360)
...|+.++.+++..+.+..+-... .-+.++++++.+|+..+. ...|++++++ +. ..+.+.. .. ... .+
T Consensus 259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~-~~-~~~~~~ 333 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTC-ED-GDHYSA 333 (353)
T ss_dssp SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESST-TS-STTEEE
T ss_pred CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccC-CC-CCceEE
Confidence 457999999877766665554444 346789999889988775 3479999887 42 3333322 22 233 78
Q ss_pred EEcCCCCEEEEEec
Q 018144 259 NLAPDGTFWIAIIK 272 (360)
Q Consensus 259 ~~d~~G~lwva~~~ 272 (360)
.++++|+.++-...
T Consensus 334 ~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 334 SFSPDGKYYVDTYS 347 (353)
T ss_dssp EE-TTSSEEEEEEE
T ss_pred EECCCCCEEEEEEc
Confidence 89999998886654
No 185
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=91.08 E-value=9 Score=32.72 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=47.2
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC--
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 227 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~-- 227 (360)
..|.|..+|+|++.++-.. +...|.|..+|.++.+.... ........++++|||+++..+.+.
T Consensus 102 ~~n~i~wsP~G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ta~t~~r 166 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGF--------------GNLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLATATTSPR 166 (194)
T ss_pred CceEEEECCCCCEEEEEEc--------------cCCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEEEEEeccc
Confidence 4678999999987664221 12246788899874443222 223356789999999988777653
Q ss_pred ---CCEEEEEEecCC
Q 018144 228 ---KFRCRKYWLKGE 239 (360)
Q Consensus 228 ---~~~i~~~~~~g~ 239 (360)
.+.+..++..|.
T Consensus 167 ~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 167 LRVDNGFKIWSFQGR 181 (194)
T ss_pred eeccccEEEEEecCe
Confidence 234444555443
No 186
>PTZ00420 coronin; Provisional
Probab=90.92 E-value=19 Score=36.28 Aligned_cols=71 Identities=1% Similarity=-0.207 Sum_probs=45.9
Q ss_pred ccccEEEcCCCcEE-EEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FANDVVEASDGSLY-FTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~l~~d~dG~l~-vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.++.+++.+++... +| +...+.|..+|..+++.............++++++|+. +++....
T Consensus 127 ~V~sVaf~P~g~~iLaS-----------------gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~l-Lat~s~D 188 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCS-----------------SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNL-LSGTCVG 188 (568)
T ss_pred cEEEEEECCCCCeEEEE-----------------EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCE-EEEEecC
Confidence 46778888888544 33 12356788888876654332222234678999999984 4555556
Q ss_pred CEEEEEEecC
Q 018144 229 FRCRKYWLKG 238 (360)
Q Consensus 229 ~~i~~~~~~g 238 (360)
+.|..||+..
T Consensus 189 ~~IrIwD~Rs 198 (568)
T PTZ00420 189 KHMHIIDPRK 198 (568)
T ss_pred CEEEEEECCC
Confidence 6788888754
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=90.71 E-value=6.8 Score=35.93 Aligned_cols=133 Identities=14% Similarity=0.040 Sum_probs=79.6
Q ss_pred cEEEEEcCCCCeEEEEe------CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC--cCcceeeecc---CCCCCC
Q 018144 187 GQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAE---NLPGAP 255 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~------~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~--~~~~~~~~~~---~~~g~p 255 (360)
.-|..+|.-||+.+.-. +.+..+..++|++||..||... +..|..|++..+ .-..+.++.. .+.|+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 34667777777765421 2345678999999999777654 457888887532 1111222211 123445
Q ss_pred ceeEEcCC--CCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccc
Q 018144 256 DNINLAPD--GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSF 333 (360)
Q Consensus 256 d~i~~d~~--G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~ 333 (360)
..+++.+. +.+=++.... .-+|++- .++..+..+....| .
T Consensus 211 sc~a~sP~~~~~~a~gsY~q---------------------------------~~giy~~-~~~~pl~llggh~g----G 252 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQ---------------------------------RVGIYND-DGRRPLQLLGGHGG----G 252 (406)
T ss_pred eeeeccCCCCcceeeecccc---------------------------------eeeeEec-CCCCceeeecccCC----C
Confidence 55666543 2455555542 1234332 35567777765444 4
Q ss_pred eeeEEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 334 VTSGLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 334 ~t~~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
+|.+... +++||.|.-..+.|...++
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEee
Confidence 6666554 5889999999999988775
No 188
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.62 E-value=21 Score=36.23 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=80.6
Q ss_pred EEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEE
Q 018144 154 VVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232 (360)
Q Consensus 154 l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~ 232 (360)
-.+++|| .||+.....+ ...+......+.++.++.+.++... ..-..+..+.+++||+.+.+... ++|+
T Consensus 402 PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~--g~v~ 471 (591)
T PRK13616 402 PSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG--GKVY 471 (591)
T ss_pred ceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC--CEEE
Confidence 3678885 6888642210 0001111234567666655555433 11224778999999998877653 4676
Q ss_pred E---EEecCCc--CcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 018144 233 K---YWLKGER--KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 307 (360)
Q Consensus 233 ~---~~~~g~~--~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 307 (360)
. ...++.. .+....+...+...+..+..-.++.|.|+.... .
T Consensus 472 Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~---------------------------------~ 518 (591)
T PRK13616 472 LAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP---------------------------------E 518 (591)
T ss_pred EEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC---------------------------------C
Confidence 5 3322221 111111221222234567777788888775432 2
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCC
Q 018144 308 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 350 (360)
Q Consensus 308 ~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~ 350 (360)
..|++++-+|.....+ +.+.....+..+.-..+.||+++-.
T Consensus 519 ~~v~~v~vDG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~~ 559 (591)
T PRK13616 519 HPVWYVNLDGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDAR 559 (591)
T ss_pred CceEEEecCCcccccc--CCCCccCceEEEecCCceEEEEcCC
Confidence 3577888888765432 2333334455555555678887543
No 189
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=90.43 E-value=21 Score=35.90 Aligned_cols=171 Identities=11% Similarity=0.017 Sum_probs=88.1
Q ss_pred CCCcceEEEcCCCCEEEEecCCeEEEEE--CCeeeE-EEecCCeEEEEe-----------CCCcEEE-Ec-CCC-eEEEe
Q 018144 78 VNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSHLIICD-----------NANGLHK-VS-EDG-VENFL 140 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~-~~~~~g~L~v~~-----------~~~gl~~-~~-~~g-~~~l~ 140 (360)
=..=|++++.++|+|+....+|.|..+| +++... ....+|.||-.. .+.|++. ++ ..+ ++.-
T Consensus 69 drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~- 147 (691)
T KOG2048|consen 69 DRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK- 147 (691)
T ss_pred CCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE-
Confidence 3577899999899999888999999998 665432 222244444222 1233322 22 233 2211
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE----eCCCc-----Ccce
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFY-----FANG 211 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~----~~~l~-----~png 211 (360)
..+. ..-..+-.+..+++|.=.++ +..+|.|-.+|..+++.-.+ .+.+. ...+
T Consensus 148 r~l~-rq~sRvLslsw~~~~~~i~~-----------------Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 148 RSLM-RQKSRVLSLSWNPTGTKIAG-----------------GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred eecc-cccceEEEEEecCCccEEEe-----------------cccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 1111 11124556777888863332 44456677777765543221 11222 2456
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEEEEec
Q 018144 212 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 272 (360)
Q Consensus 212 ia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~ 272 (360)
+.+-.|+. +.-.| +.+.|..+|.+.... .+.+. .+.+-.-.++++.++ .+.++...
T Consensus 210 v~~Lrd~t-I~sgD-S~G~V~FWd~~~gTL--iqS~~-~h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 210 VLFLRDST-IASGD-SAGTVTFWDSIFGTL--IQSHS-CHDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred EEEeecCc-EEEec-CCceEEEEcccCcch--hhhhh-hhhcceeEEEEcCCCCeEEEccCC
Confidence 66666763 44444 456777666532211 11111 122234457777665 56666655
No 190
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=90.36 E-value=17 Score=34.71 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=37.5
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
-...+++|||- ++.+.+..+-|..||++.+. ....|. ...+-...|.+.++| +|+++..
T Consensus 350 ~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~--~~a~Fp-ght~~vk~i~FsENG-Y~Lat~a 408 (506)
T KOG0289|consen 350 YTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT--NVAKFP-GHTGPVKAISFSENG-YWLATAA 408 (506)
T ss_pred eEEeeEcCCce-EEeccCCCceEEEEEcCCcc--ccccCC-CCCCceeEEEeccCc-eEEEEEe
Confidence 35678999994 88888877766777775432 222232 123335568889888 7776654
No 191
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=90.16 E-value=0.81 Score=27.96 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=25.7
Q ss_pred CCCCCcceEEEcC-CCCEEEEe-cCCeEEEEE-CC
Q 018144 76 GSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG 107 (360)
Q Consensus 76 ~~~~~Pe~i~~d~-~G~l~v~~-~~G~I~~~~-~g 107 (360)
..+..|.++++|. ++.||.++ ..+.|.+.+ +|
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 3578999999997 57899988 567888887 65
No 192
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.16 E-value=21 Score=36.51 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=45.0
Q ss_pred cccccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
.++..|++.|- .+.+++ |.-+|.+-.++-...++..+.+--.....+++.|||+..+|...
T Consensus 410 dfVTcVaFnPvDDryFiS-----------------GSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~- 471 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFIS-----------------GSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF- 471 (712)
T ss_pred CeeEEEEecccCCCcEee-----------------cccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEe-
Confidence 36677788774 456664 33344444444333555444333345678999999996666654
Q ss_pred CCEEEEEEecCCc
Q 018144 228 KFRCRKYWLKGER 240 (360)
Q Consensus 228 ~~~i~~~~~~g~~ 240 (360)
.+.+..|+..+.+
T Consensus 472 ~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 472 NGYCRFYDTEGLK 484 (712)
T ss_pred ccEEEEEEccCCe
Confidence 5677888876654
No 193
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=90.06 E-value=13 Score=33.07 Aligned_cols=160 Identities=11% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCCcceEEEcCCCC-EEEEecCCeEEEEE-CC-ee-e--------------EEEec-CCeEEEEeCCCcEEEEc-CCC--
Q 018144 78 VNHPEDASMDKNGV-IYTATRDGWIKRLQ-DG-TW-V--------------NWKFI-DSHLIICDNANGLHKVS-EDG-- 135 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~-l~v~~~~G~I~~~~-~g-~~-~--------------~~~~~-~g~L~v~~~~~gl~~~~-~~g-- 135 (360)
...-.++++..+|. |-.|+.++.+...+ ++ +. . .|... .+.+..+..++.+...+ ..+
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC 99 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE
Confidence 45556777777664 33444566555444 21 10 0 01111 22344555556666666 444
Q ss_pred eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEE
Q 018144 136 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL 214 (360)
Q Consensus 136 ~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~ 214 (360)
.....+. +. -..++..|+|+ +-+ +.....|.-+|..+.+.....+...+.|-+++
T Consensus 100 ~~~i~~~--~e----ni~i~wsp~g~~~~~------------------~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w 155 (313)
T KOG1407|consen 100 TARIETK--GE----NINITWSPDGEYIAV------------------GNKDDRITFIDARTYKIVNEEQFKFEVNEISW 155 (313)
T ss_pred EEEeecc--Cc----ceEEEEcCCCCEEEE------------------ecCcccEEEEEecccceeehhcccceeeeeee
Confidence 2222111 11 22456667764 333 22345677777654444333334557888999
Q ss_pred ecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCce---eEEcCCCCEEE
Q 018144 215 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN---INLAPDGTFWI 268 (360)
Q Consensus 215 ~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~---i~~d~~G~lwv 268 (360)
..+++ +++..++.+.|..+..- .+..... ....|.| |.+|++|+.+.
T Consensus 156 ~~~nd-~Fflt~GlG~v~ILsyp--sLkpv~s----i~AH~snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 156 NNSND-LFFLTNGLGCVEILSYP--SLKPVQS----IKAHPSNCICIEFDPDGRYFA 205 (313)
T ss_pred cCCCC-EEEEecCCceEEEEecc--ccccccc----cccCCcceEEEEECCCCceEe
Confidence 98877 77787777777665431 2222222 2234444 56799997654
No 194
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=90.03 E-value=20 Score=34.94 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=40.5
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
..||+++|-+..|+|+--...+|+.||...+.....-.+ ..| -..+++.++|.+.++...
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~P--lstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHP--LSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceeee--cCC--cceeeecCCceEEEeecC
Confidence 369999998888999988888999999854332222122 122 245788888876665443
No 195
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=89.99 E-value=11 Score=35.47 Aligned_cols=69 Identities=20% Similarity=0.100 Sum_probs=45.3
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
+-.+.+.++|...+|-++ +..+-.+|+.|........+ -+..-.++++|||+ .+.+..-.+
T Consensus 118 Vl~~~fsp~g~~l~tGsG-----------------D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg 179 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSG-----------------DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDG 179 (480)
T ss_pred EEEEEecCCCceEEecCC-----------------CceEEeeccCCCCcceeecCCccEEEEEEECCCcc-hhhccccCC
Confidence 345677888887776332 33455566655443332222 34567899999998 667777778
Q ss_pred EEEEEEec
Q 018144 230 RCRKYWLK 237 (360)
Q Consensus 230 ~i~~~~~~ 237 (360)
.|..++++
T Consensus 180 ~I~lwdpk 187 (480)
T KOG0271|consen 180 SIRLWDPK 187 (480)
T ss_pred eEEEecCC
Confidence 89888875
No 196
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.96 E-value=15 Score=33.44 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=32.9
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEEEecC-CcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g-~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
....|.|++.|....+ ++--+.++..-+|-+. .++.+.+ ..+.-.....+..+|.||+=.
T Consensus 251 VYaVNsi~FhP~hgtl-vTaGsDGtf~FWDkdar~kLk~s~----~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTL-VTAGSDGTFSFWDKDARTKLKTSE----THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEEecceEeecccceE-EEecCCceEEEecchhhhhhhccC----cCCCccceeEecCCCCEEEEE
Confidence 4567999999987655 4443344444444321 1222221 222223456788999988843
No 197
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.71 E-value=1.3 Score=26.99 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=27.6
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEc
Q 018144 216 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 261 (360)
Q Consensus 216 ~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d 261 (360)
||++.||+++...+.|..+|....+ ....+. ....|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~i~--vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK--VIATIP--VGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe--EEEEEE--CCCCCceEEeC
Confidence 5788999999999999999974321 111111 23467777764
No 198
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=89.09 E-value=17 Score=32.99 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=66.0
Q ss_pred EEEcCCCCEEEEe-cCCeEEEEE-CCeeeEE---------------EecCCeEEEEeCCCcEEEEc-CCC--eEEEeecc
Q 018144 84 ASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNW---------------KFIDSHLIICDNANGLHKVS-EDG--VENFLSYV 143 (360)
Q Consensus 84 i~~d~~G~l~v~~-~~G~I~~~~-~g~~~~~---------------~~~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~ 143 (360)
+.++++|..+++. .|..|+-++ .|.-+.+ ...+..|+-|..++.++.+| ++| .+.+...
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h- 131 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH- 131 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccc-
Confidence 3556677776655 566676665 3322221 11234577777778888899 777 3333211
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEE
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 223 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v 223 (360)
..++|.+....-|-..++. +...+.+-.+|..+++.....+.-..-..+++..+++.++.
T Consensus 132 ----~~~vNs~~p~rrg~~lv~S----------------gsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 132 ----TSFVNSLDPSRRGPQLVCS----------------GSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred ----cceeeecCccccCCeEEEe----------------cCCCceEEEEeecccchhhccccceeEEEEEecccccceee
Confidence 1356666666666555543 23455666666543333222222222334455444432322
Q ss_pred EeCCCCEEEEEEe
Q 018144 224 CESWKFRCRKYWL 236 (360)
Q Consensus 224 ~~t~~~~i~~~~~ 236 (360)
+ --.+.|..+++
T Consensus 192 g-gIdn~ikvWd~ 203 (338)
T KOG0265|consen 192 G-GIDNDIKVWDL 203 (338)
T ss_pred c-cccCceeeecc
Confidence 2 22334555554
No 199
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.90 E-value=34 Score=36.11 Aligned_cols=164 Identities=11% Similarity=0.094 Sum_probs=78.8
Q ss_pred ceEEEcC-C-CCEEEEecCCeEEEEE--CCee-e----------EEEe--cCCeEEEEeCCC-cEEEEc-CCC--eEEEe
Q 018144 82 EDASMDK-N-GVIYTATRDGWIKRLQ--DGTW-V----------NWKF--IDSHLIICDNAN-GLHKVS-EDG--VENFL 140 (360)
Q Consensus 82 e~i~~d~-~-G~l~v~~~~G~I~~~~--~g~~-~----------~~~~--~~g~L~v~~~~~-gl~~~~-~~g--~~~l~ 140 (360)
.++++.+ + ..|..++.+|.|..++ +++. . .+.. .++.++++.... .+..++ .++ ...+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 4566654 2 3455556788887777 3321 1 1222 234444433333 344455 444 22221
Q ss_pred eccCCccccccccEEE-cCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeE--EEEeCCCcCcceEEEecC
Q 018144 141 SYVNGSKLRFANDVVE-ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVADGFYFANGVALSRD 217 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~-d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~--~~~~~~l~~pngia~~~d 217 (360)
. . ..+..+.+ .++|...++ +..+|.|..||..+++. ..+.........+.+. +
T Consensus 616 ~--~----~~v~~v~~~~~~g~~lat-----------------gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~ 671 (793)
T PLN00181 616 T--K----ANICCVQFPSESGRSLAF-----------------GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D 671 (793)
T ss_pred c--C----CCeEEEEEeCCCCCEEEE-----------------EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C
Confidence 1 0 12334455 345665554 33467888898765432 1222112234567775 5
Q ss_pred CCEEEEEeCCCCEEEEEEecCCcC----cceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 218 EDYVVVCESWKFRCRKYWLKGERK----GKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 218 g~~l~v~~t~~~~i~~~~~~g~~~----~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
++.++ +.+..+.|..+++..... .....+. ........+.++++|.+.++..
T Consensus 672 ~~~lv-s~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 672 SSTLV-SSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CCEEE-EEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence 65444 444556777777642110 1112221 1222344577888887555443
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=88.49 E-value=21 Score=33.29 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=44.9
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE-cCCCC-eEEEEeCCCc--CcceEEEecCCCEEEEEeC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSSN-ITTLVADGFY--FANGVALSRDEDYVVVCES 226 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~tg-~~~~~~~~l~--~pngia~~~dg~~l~v~~t 226 (360)
.-.|+++++|++..| +...|.|+|+ .-.+| ++..+..+.. ....++|++|+++| .+.+
T Consensus 176 lAalafs~~G~llAT-----------------ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L-~~sS 237 (391)
T KOG2110|consen 176 LAALAFSPDGTLLAT-----------------ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL-AASS 237 (391)
T ss_pred eeEEEECCCCCEEEE-----------------eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE-EEec
Confidence 457888899988776 3345776663 32334 4444555543 34578999999844 5555
Q ss_pred CCCEEEEEEec
Q 018144 227 WKFRCRKYWLK 237 (360)
Q Consensus 227 ~~~~i~~~~~~ 237 (360)
.+..|..|.++
T Consensus 238 ~TeTVHiFKL~ 248 (391)
T KOG2110|consen 238 NTETVHIFKLE 248 (391)
T ss_pred CCCeEEEEEec
Confidence 66788888774
No 201
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=88.31 E-value=8.4 Score=39.62 Aligned_cols=133 Identities=12% Similarity=0.107 Sum_probs=74.2
Q ss_pred cceEEEcCCCCEEEEe-cCCeEEEEE-CCeee--EEEe-----------cCCeEEEEeCCCcEEEEc-CCC--eEEEeec
Q 018144 81 PEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWV--NWKF-----------IDSHLIICDNANGLHKVS-EDG--VENFLSY 142 (360)
Q Consensus 81 Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g~~~--~~~~-----------~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~ 142 (360)
-.+++.|.-+.+.+++ .+|-+..++ +++.- .+.. ..+-+-++..+..|..+| .+. ++.+
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f--- 572 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF--- 572 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---
Confidence 3567888767676666 566555555 44321 1100 011122222234555665 332 2222
Q ss_pred cCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEE
Q 018144 143 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 222 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~ 222 (360)
.|. .+.++++++++||+-.++ ..-++.|..+|.-|+...--..--.-+-.+.++|.|++|-
T Consensus 573 -~gh-~nritd~~FS~DgrWlis-----------------asmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 573 -WGH-GNRITDMTFSPDGRWLIS-----------------ASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred -hcc-ccceeeeEeCCCCcEEEE-----------------eecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence 221 146899999999985443 1234678888877776532211122345688999999887
Q ss_pred EEeCCCCEEEEEE
Q 018144 223 VCESWKFRCRKYW 235 (360)
Q Consensus 223 v~~t~~~~i~~~~ 235 (360)
.+....+.|+-+.
T Consensus 634 T~Hvd~~gIylWs 646 (910)
T KOG1539|consen 634 TVHVDQNGIYLWS 646 (910)
T ss_pred EEEecCceEEEEE
Confidence 7777767777654
No 202
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.21 E-value=20 Score=32.67 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=57.9
Q ss_pred EecCCeEEEEeCCCcEEEEc-CC--CeEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEE
Q 018144 113 KFIDSHLIICDNANGLHKVS-ED--GVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 189 (360)
Q Consensus 113 ~~~~g~L~v~~~~~gl~~~~-~~--g~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l 189 (360)
...+...|++++..|+..+| .+ .-+.+ ...+-. ....++.+.. ...|++|-. .++
T Consensus 93 ~vse~yvyvad~ssGL~IvDIS~P~sP~~~-~~lnt~--gyaygv~vsG-n~aYVadld------------------dgf 150 (370)
T COG5276 93 RVSEEYVYVADWSSGLRIVDISTPDSPTLI-GFLNTD--GYAYGVYVSG-NYAYVADLD------------------DGF 150 (370)
T ss_pred EecccEEEEEcCCCceEEEeccCCCCccee-ccccCC--ceEEEEEecC-CEEEEeecc------------------CcE
Confidence 34467799999999999998 33 22221 111100 2344555542 368898632 356
Q ss_pred EEEcCCCCeEEEEeCCCcCc----ceEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 190 LKYDPSSNITTLVADGFYFA----NGVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 190 ~~~d~~tg~~~~~~~~l~~p----ngia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
+.+|..+-+--++..-...| ..++++ |++-|++... +++..+|...+
T Consensus 151 LivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d-~GL~ivDVSnp 201 (370)
T COG5276 151 LIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRD-GGLTIVDVSNP 201 (370)
T ss_pred EEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeC-CCeEEEEccCC
Confidence 66775443332332222222 456665 5679999874 56888888654
No 203
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=88.12 E-value=10 Score=29.14 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=45.1
Q ss_pred CCcceEEEcCCCCEEEEe--cCC--eEEEEECCeeeEEEecCC-----eEEEEeCCCcEEEEc--CCC-eEE-EeeccCC
Q 018144 79 NHPEDASMDKNGVIYTAT--RDG--WIKRLQDGTWVNWKFIDS-----HLIICDNANGLHKVS--EDG-VEN-FLSYVNG 145 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~--~~G--~I~~~~~g~~~~~~~~~g-----~L~v~~~~~gl~~~~--~~g-~~~-l~~~~~~ 145 (360)
..|.-++.+++|+.+.++ ..+ .++.+| ...+.+..+.+ +++..|...--+.+. .+| .+. +. .
T Consensus 4 isPSYvy~~sng~~~ass~g~~~g~nvFyYD-sti~RI~TCc~vrP~Y~v~~~D~~~~sf~I~kn~dG~~~Ft~~----e 78 (123)
T PF11763_consen 4 ISPSYVYLNSNGYMIASSNGDPEGENVFYYD-STIKRIVTCCCVRPIYRVYHDDPNKSSFNIIKNNDGTYQFTFV----E 78 (123)
T ss_pred cccceEEEcCCCcEEeeccCCcCceeeEEec-CCcceEEEecccccEEEEeecCCCcceEEEEecCCCcEEEEEc----c
Confidence 468888999999999887 223 344444 22222222222 133333322233333 344 221 11 1
Q ss_pred ccccccccEEEcCCCcEEEEe
Q 018144 146 SKLRFANDVVEASDGSLYFTV 166 (360)
Q Consensus 146 ~~~~~~n~l~~d~dG~l~vtd 166 (360)
.....|..+.+..+|+||||-
T Consensus 79 ~~~~ep~~l~~l~dgri~~ts 99 (123)
T PF11763_consen 79 SSFSEPLDLHTLSDGRIWFTS 99 (123)
T ss_pred cCCCCcEEEEEecCCcEEEEc
Confidence 123467788999999999974
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.01 E-value=3.1 Score=38.85 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=63.7
Q ss_pred cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 161 SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 161 ~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
-+|+||.. |-.+.-.+.+.+.+..+.|-.||+..++--+.... -..-..+.+.|+|+++|++++. +.|..||..+
T Consensus 202 PvW~tdi~--Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~ 278 (412)
T KOG3881|consen 202 PVWITDIR--FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRG 278 (412)
T ss_pred eeeeccce--ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccC
Confidence 36776643 22221122334556678888999875543222111 1223567889999999999985 5799999876
Q ss_pred CcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 239 ERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 239 ~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
.+... .......|.+..|.+.+.+.+...+
T Consensus 279 ~kl~g--~~~kg~tGsirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 279 GKLLG--CGLKGITGSIRSIHCHPTHPVLASC 308 (412)
T ss_pred ceeec--cccCCccCCcceEEEcCCCceEEee
Confidence 43321 2123455678888888877665544
No 205
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=87.63 E-value=16 Score=35.52 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=44.7
Q ss_pred cccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc-ceEEEecCCCEEEEEeCCC
Q 018144 151 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 151 ~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p-ngia~~~dg~~l~v~~t~~ 228 (360)
..+|++.+-.. |+++-. -+.+|+.||....+...-.. ...| ..+++.++|. .+++.+.+
T Consensus 211 ~~gicfspsne~l~vsVG-----------------~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~-~L~aG~s~ 271 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVG-----------------YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGT-YLCAGNSK 271 (673)
T ss_pred cCcceecCCccceEEEec-----------------ccceEEEeecccccccceee-ecCCcceeeecCCce-EEEeecCC
Confidence 46888988764 555422 24578899875433221111 1223 4689999996 55666678
Q ss_pred CEEEEEEecCC
Q 018144 229 FRCRKYWLKGE 239 (360)
Q Consensus 229 ~~i~~~~~~g~ 239 (360)
++|+.||+.+.
T Consensus 272 G~~i~YD~R~~ 282 (673)
T KOG4378|consen 272 GELIAYDMRST 282 (673)
T ss_pred ceEEEEecccC
Confidence 99999998653
No 206
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=87.56 E-value=22 Score=32.30 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=114.4
Q ss_pred ecCCCCCCcceEEEcCCCCE-EEEecCCeEEEEE---CCeeeEEE-----------ecCCeEEEEeCC-Cc--EEEEc-C
Q 018144 73 VGEGSVNHPEDASMDKNGVI-YTATRDGWIKRLQ---DGTWVNWK-----------FIDSHLIICDNA-NG--LHKVS-E 133 (360)
Q Consensus 73 ~~~~~~~~Pe~i~~d~~G~l-~v~~~~G~I~~~~---~g~~~~~~-----------~~~g~L~v~~~~-~g--l~~~~-~ 133 (360)
+..|-+..--++.+..|.+. ..++.||++..+| +.++..+. .+.|....+..- +- +|.+. +
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 33344455556666666554 4455899999998 34443321 134553333322 22 33333 2
Q ss_pred --CCeEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcc
Q 018144 134 --DGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFAN 210 (360)
Q Consensus 134 --~g~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pn 210 (360)
+|.........+.. .+.....+-+|++|.- +........+|-++|+......+ ....-
T Consensus 130 d~~g~~~v~r~l~gHt-gylScC~f~dD~~ilT------------------~SGD~TCalWDie~g~~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHT-GYLSCCRFLDDNHILT------------------GSGDMTCALWDIETGQQTQVFHGHTGDVM 190 (343)
T ss_pred cccccceeeeeecCcc-ceeEEEEEcCCCceEe------------------cCCCceEEEEEcccceEEEEecCCcccEE
Confidence 33111222222211 1333333444555543 23344567778777766554333 34456
Q ss_pred eEEEec-CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHH
Q 018144 211 GVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH 289 (360)
Q Consensus 211 gia~~~-dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~ 289 (360)
++.+.| +++ .|++..-...-..+|+..+ .-.+.|..+ ..-.+.+.+=++|.-+++...
T Consensus 191 slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~gh-esDINsv~ffP~G~afatGSD----------------- 249 (343)
T KOG0286|consen 191 SLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEGH-ESDINSVRFFPSGDAFATGSD----------------- 249 (343)
T ss_pred EEecCCCCCC-eEEecccccceeeeeccCc--ceeEeeccc-ccccceEEEccCCCeeeecCC-----------------
Confidence 788888 776 7777655444444554321 223344322 222455667777766665443
Q ss_pred HHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceeeEEEEC-CEEEEEeCCCCeEEEE
Q 018144 290 VLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKV 357 (360)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~-g~Lylgs~~~~~i~~~ 357 (360)
.+....|| ...+.+..|..+. . +..++++.+.- |+|.++.+.....-+.
T Consensus 250 -----------------D~tcRlyDlRaD~~~a~ys~~~-~-~~gitSv~FS~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 250 -----------------DATCRLYDLRADQELAVYSHDS-I-ICGITSVAFSKSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred -----------------CceeEEEeecCCcEEeeeccCc-c-cCCceeEEEcccccEEEeeecCCceeEe
Confidence 23344455 3455666666432 2 34567777764 7777776655444433
No 207
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.49 E-value=8.8 Score=34.77 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=70.4
Q ss_pred EEEEEcCCCCeEEEEe---CC-CcCcceEEEecCCCEEEEEeCC----CCEEEEEEecCC--cCcceeeeccCCCCCCce
Q 018144 188 QLLKYDPSSNITTLVA---DG-FYFANGVALSRDEDYVVVCESW----KFRCRKYWLKGE--RKGKLETFAENLPGAPDN 257 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~---~~-l~~pngia~~~dg~~l~v~~t~----~~~i~~~~~~g~--~~~~~~~~~~~~~g~pd~ 257 (360)
..+.+|+++.+..+.. ++ ..+-.|+ +++||..||.+|.. .+-|-.||.... +.+++..+. -.|..
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGv-fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G----iGpHe 166 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGV-FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG----IGPHE 166 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccc-cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC----cCcce
Confidence 3455677655443322 11 2234454 89999999999753 233555665421 222222221 14888
Q ss_pred eEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccceee
Q 018144 258 INLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTS 336 (360)
Q Consensus 258 i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~ 336 (360)
+.+-.||+..+...++ +...|..-+. +-.+. .. ...+..++ .+|++++...-|.......+--
T Consensus 167 v~lm~DGrtlvvanGG-------IethpdfgR~----~lNld----sM-ePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 167 VTLMADGRTLVVANGG-------IETHPDFGRT----ELNLD----SM-EPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred eEEecCCcEEEEeCCc-------eecccccCcc----ccchh----hc-CccEEEEeccccchhhhccCchhhhhcceee
Confidence 9999999766654441 1111111100 00000 01 12445566 6888877655553322223333
Q ss_pred EEEE-CCEEEEEeC
Q 018144 337 GLQV-DNHLYVISL 349 (360)
Q Consensus 337 ~~~~-~g~Lylgs~ 349 (360)
+..+ +|++|+|.-
T Consensus 231 ld~g~dgtvwfgcQ 244 (366)
T COG3490 231 LDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeCCCCcEEEEEE
Confidence 3333 588998854
No 208
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.39 E-value=27 Score=33.22 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=49.8
Q ss_pred cCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEc
Q 018144 183 GKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 261 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d 261 (360)
+.+.+.++.+|.+......... ..+....+++++||+.++.... ..+|..|+.... .......+.. ....+.+.
T Consensus 330 Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~-d~~i~l~~~e~~--~dr~lise~~--~its~~iS 404 (519)
T KOG0293|consen 330 GSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV-DKKIRLYNREAR--VDRGLISEEQ--PITSFSIS 404 (519)
T ss_pred cCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec-ccceeeechhhh--hhhccccccC--ceeEEEEc
Confidence 5567789999987443332211 1234578999999998877765 456777765421 1111111111 24567788
Q ss_pred CCCCEEEEEec
Q 018144 262 PDGTFWIAIIK 272 (360)
Q Consensus 262 ~~G~lwva~~~ 272 (360)
.+|.+.+....
T Consensus 405 ~d~k~~LvnL~ 415 (519)
T KOG0293|consen 405 KDGKLALVNLQ 415 (519)
T ss_pred CCCcEEEEEcc
Confidence 88887665443
No 209
>PHA02713 hypothetical protein; Provisional
Probab=86.83 E-value=37 Score=34.23 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCc---ceEEEecCCCEEEEEe
Q 018144 187 GQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVVCE 225 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~p---ngia~~~dg~~l~v~~ 225 (360)
..+.+|||.+++++.+.. +..+ .+++. -+| .+|+..
T Consensus 367 ~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g-~IYviG 405 (557)
T PHA02713 367 RTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQ-YIYIIG 405 (557)
T ss_pred ceEEEEECCCCeEEECCC-CCcccccccEEE-ECC-EEEEEe
Confidence 468999999888776432 2222 12222 245 488864
No 210
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.74 E-value=45 Score=35.06 Aligned_cols=114 Identities=12% Similarity=0.103 Sum_probs=60.5
Q ss_pred CCCEEEEecCCeEEEEE--CCeeeE---------E------------------EecCCeEEEEeC----------CCcEE
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWVN---------W------------------KFIDSHLIICDN----------ANGLH 129 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~~---------~------------------~~~~g~L~v~~~----------~~gl~ 129 (360)
++.||+++.+|+|+.+| +|+..- + ...++.++|+.. ..-+.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 45899999999999999 675331 0 012567888753 12366
Q ss_pred EEc-CCC-eEE-Eeecc--------CCccc--ccc---ccEEEcCC-CcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 130 KVS-EDG-VEN-FLSYV--------NGSKL--RFA---NDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 130 ~~~-~~g-~~~-l~~~~--------~~~~~--~~~---n~l~~d~d-G~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
.+| .+| ... +.... .+... ..+ .-++.|++ |.+|+...+...+.-...+........+.|+.+
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 788 788 332 21110 01000 111 23566654 567775433211100000001112335789999
Q ss_pred cCCCCeEEEE
Q 018144 193 DPSSNITTLV 202 (360)
Q Consensus 193 d~~tg~~~~~ 202 (360)
|.+||+.+..
T Consensus 420 D~~TGk~~W~ 429 (764)
T TIGR03074 420 DATTGKERWV 429 (764)
T ss_pred eCCCCceEEE
Confidence 9999988654
No 211
>PHA02713 hypothetical protein; Provisional
Probab=86.11 E-value=41 Score=33.97 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCeEEEEeCCCcC---cceEEEecCCCEEEEEeCCC------CEEEEEEecC
Q 018144 187 GQLLKYDPSSNITTLVADGFYF---ANGVALSRDEDYVVVCESWK------FRCRKYWLKG 238 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~---pngia~~~dg~~l~v~~t~~------~~i~~~~~~g 238 (360)
..+.+|||.+++++.+.. +.. ..+++.- +| .+|+..... ..+.+||++.
T Consensus 432 ~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPN-FWTGTIRPGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ceEEEECCCCCeEeecCC-CCcccccCcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence 469999999998876542 222 2234433 34 488875321 2467888754
No 212
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=85.84 E-value=16 Score=35.64 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=61.0
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~ 228 (360)
..+.+++.+|-++-|+.- ..|.|..+|..+..+.....+ ......|.+++||..||-.. -.
T Consensus 511 aCyALa~spDakvcFscc-----------------sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG-lD 572 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG-LD 572 (705)
T ss_pred hhhhhhcCCccceeeeec-----------------cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC-Cc
Confidence 467888999999888632 356788888864433222222 23567789999998666444 45
Q ss_pred CEEEEEEecCC-cCcce----eeeccCCCCCCce--eEEc-CCCCEEEEEec
Q 018144 229 FRCRKYWLKGE-RKGKL----ETFAENLPGAPDN--INLA-PDGTFWIAIIK 272 (360)
Q Consensus 229 ~~i~~~~~~g~-~~~~~----~~~~~~~~g~pd~--i~~d-~~G~lwva~~~ 272 (360)
+.|..+|+... +..+. ++|. +.-.|.+ +++. +++++||-...
T Consensus 573 ntvRcWDlregrqlqqhdF~SQIfS--Lg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDFSSQIFS--LGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred cceeehhhhhhhhhhhhhhhhhhee--cccCCCccceeeecccCcEEEEecC
Confidence 67888887422 21111 1221 2223443 5554 56788885543
No 213
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=85.62 E-value=24 Score=34.24 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=45.6
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC--EEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF--RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~--~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
.+++.+|.++++..++.......-.-+++|||+.+.++....+ .|+.+|+.+..... + .+..+.-..=.+.+||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---L-t~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---L-TNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---c-ccCCccccCccCCCCC
Confidence 4688889888877666553223334578999998888876543 57777776643211 2 2233332333456777
Q ss_pred C
Q 018144 265 T 265 (360)
Q Consensus 265 ~ 265 (360)
.
T Consensus 294 ~ 294 (425)
T COG0823 294 S 294 (425)
T ss_pred C
Confidence 5
No 214
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.45 E-value=25 Score=30.97 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=80.5
Q ss_pred eEEEcCCCCEEEEecCCeEEEEE---CCee-eEEEe------------cCCeEEEEeCCCcEEEEc-CCC--eEEEeecc
Q 018144 83 DASMDKNGVIYTATRDGWIKRLQ---DGTW-VNWKF------------IDSHLIICDNANGLHKVS-EDG--VENFLSYV 143 (360)
Q Consensus 83 ~i~~d~~G~l~v~~~~G~I~~~~---~g~~-~~~~~------------~~g~L~v~~~~~gl~~~~-~~g--~~~l~~~~ 143 (360)
.+-+..+|+--+++.+.+..|+- .|.. +.+.. ..-.+--|..++-+..+| .+| .+.+...
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH- 100 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH- 100 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc-
Confidence 34455677766666555555553 3321 11110 111222233345677777 777 4444211
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe---CCCcCcceEEEecCCCE
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDY 220 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~---~~l~~pngia~~~dg~~ 220 (360)
...+|.+.+..+-.+.++-+ -...+-.+|=.+..++.+. +.......|.+. + .
T Consensus 101 ----~aqVNtV~fNeesSVv~Sgs-----------------fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~-h 156 (307)
T KOG0316|consen 101 ----LAQVNTVRFNEESSVVASGS-----------------FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--E-H 156 (307)
T ss_pred ----cceeeEEEecCcceEEEecc-----------------ccceeEEEEcccCCCCccchhhhhcCceeEEEec--c-c
Confidence 13578888888888888632 2334455554333333221 112223334333 2 3
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 270 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~ 270 (360)
.+++.+..+++..|++.- ++. ..+...-..+.+.+.++|+.-++.
T Consensus 157 eIvaGS~DGtvRtydiR~---G~l--~sDy~g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRK---GTL--SSDYFGHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred EEEeeccCCcEEEEEeec---cee--ehhhcCCcceeEEecCCCCEEEEe
Confidence 667777788899999842 221 112222124567889999865544
No 215
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=85.14 E-value=48 Score=33.93 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=50.1
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcC-cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 186 HGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~-pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
...|-.+|-.+|....+..+... ...++++|+|++| ++....+.|..+|+.+++. ...+.. ..+..+.+.+..+|
T Consensus 556 D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~--v~~l~~-Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 556 DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSL--VKQLKG-HTGTIYSLSFSRDG 631 (707)
T ss_pred CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcc--hhhhhc-ccCceeEEEEecCC
Confidence 33455566666666555555433 3578999999755 4444456677777754221 111221 23456678889999
Q ss_pred CEEEEEec
Q 018144 265 TFWIAIIK 272 (360)
Q Consensus 265 ~lwva~~~ 272 (360)
++.++...
T Consensus 632 ~vLasgg~ 639 (707)
T KOG0263|consen 632 NVLASGGA 639 (707)
T ss_pred CEEEecCC
Confidence 98887654
No 216
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=84.91 E-value=17 Score=33.98 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=36.3
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
.++|+.||..+++...-..--..+|+|+++| +.+.|++......++-||+.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence 5678888876554432222234689999999 55788888778889999874
No 217
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=84.80 E-value=31 Score=34.88 Aligned_cols=133 Identities=20% Similarity=0.277 Sum_probs=69.3
Q ss_pred CCCEEEEe-cC-C-----eEEEEE--CCeeeEE------------EecCCeEEEEeCCCc------EEEEcC-CC-eEEE
Q 018144 89 NGVIYTAT-RD-G-----WIKRLQ--DGTWVNW------------KFIDSHLIICDNANG------LHKVSE-DG-VENF 139 (360)
Q Consensus 89 ~G~l~v~~-~~-G-----~I~~~~--~g~~~~~------------~~~~g~L~v~~~~~g------l~~~~~-~g-~~~l 139 (360)
+|.||+.. .+ | .+.++| .++|..+ ...+|.||+.....| +-++|+ +. .+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 66888765 44 2 467777 4444432 123677887554332 445552 22 3332
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--CcCcceEEEecC
Q 018144 140 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRD 217 (360)
Q Consensus 140 ~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~d 217 (360)
+.-.. ...-.++++ -+|.||+.-.... .......+.+|||.+++++....- -..-.|++.- +
T Consensus 412 a~m~~---~r~~~gv~~-~~g~iYi~GG~~~-----------~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~ 475 (571)
T KOG4441|consen 412 APMLT---RRSGHGVAV-LGGKLYIIGGGDG-----------SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-N 475 (571)
T ss_pred CCCCc---ceeeeEEEE-ECCEEEEEcCcCC-----------CccccceEEEEcCCCCceeecCCcccccccceEEEE-C
Confidence 21111 112223333 5789999633210 011335799999999988765431 1122455544 3
Q ss_pred CCEEEEEeCCC-----CEEEEEEecC
Q 018144 218 EDYVVVCESWK-----FRCRKYWLKG 238 (360)
Q Consensus 218 g~~l~v~~t~~-----~~i~~~~~~g 238 (360)
+ .+|+..... ..+.+||+..
T Consensus 476 ~-~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 476 G-KIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred C-EEEEECCccCCCccceEEEEcCCC
Confidence 3 588886432 2477888754
No 218
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.75 E-value=30 Score=34.17 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=44.9
Q ss_pred cCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeC--CCCEEEEEEecCCcCcceeeeccCCCCCCceeEE
Q 018144 183 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWLKGERKGKLETFAENLPGAPDNINL 260 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t--~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~ 260 (360)
+++.|.++-|+...|+++.....-..++++...-+++.+....+ ...++..+..+. ......+.. .+..+.++++
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~--~~~~~~~~~-~~~~~~sl~i 152 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE--KVIIRIWKE-QKPLVSSLCI 152 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc--ceeeeeecc-CCCccceEEE
Confidence 55677888888877888776554444444332222222222222 223333333321 112223322 2235788999
Q ss_pred cCCCCEEEEEec
Q 018144 261 APDGTFWIAIIK 272 (360)
Q Consensus 261 d~~G~lwva~~~ 272 (360)
.+||.+-+....
T Consensus 153 s~D~~~l~~as~ 164 (541)
T KOG4547|consen 153 SPDGKILLTASR 164 (541)
T ss_pred cCCCCEEEeccc
Confidence 999987765443
No 219
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=84.69 E-value=39 Score=32.54 Aligned_cols=50 Identities=18% Similarity=0.032 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
..+-.||...|.+-....--..++.+++||-+..+|+... .+.|+..++.
T Consensus 198 ~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~-~G~I~~~~~~ 247 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE-EGKIFQNLLF 247 (476)
T ss_pred ceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC-cceEEeeehh
Confidence 3455566666654332222335678999999987777665 5678877654
No 220
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=84.65 E-value=0.8 Score=27.85 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=15.3
Q ss_pred cccccEEEcCCCcEEEE
Q 018144 149 RFANDVVEASDGSLYFT 165 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vt 165 (360)
..+++|++|++|++|++
T Consensus 13 ~~~~~IavD~~GNiYv~ 29 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVT 29 (38)
T ss_pred eeEEEEEECCCCCEEEE
Confidence 35889999999999997
No 221
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=83.57 E-value=39 Score=31.63 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=42.9
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE--CCeeeE-----------EEecCCe--EEEEeCCCcEEEEc-CC-C-eEE
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVN-----------WKFIDSH--LIICDNANGLHKVS-ED-G-VEN 138 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~g~~~~-----------~~~~~g~--L~v~~~~~gl~~~~-~~-g-~~~ 138 (360)
+.=-+++++|+.+..+++. .|+.|-.+| +|+... +.....+ ||-|..++-+-++| .. . ++.
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~ 230 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH 230 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH
Confidence 4446789999875444433 566666667 665332 1122222 44444334444555 32 2 222
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEe
Q 018144 139 FLSYVNGSKLRFANDVVEASDGSLYFTV 166 (360)
Q Consensus 139 l~~~~~~~~~~~~n~l~~d~dG~l~vtd 166 (360)
+ .|. +..+..++..|.-.+.+|-
T Consensus 231 Y----hGH-lS~V~~L~lhPTldvl~t~ 253 (460)
T KOG0285|consen 231 Y----HGH-LSGVYCLDLHPTLDVLVTG 253 (460)
T ss_pred h----ccc-cceeEEEeccccceeEEec
Confidence 2 121 2456677777766677763
No 222
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.36 E-value=39 Score=32.14 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=40.8
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCc---CcceEEEecCCCEEEEEeC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY---FANGVALSRDEDYVVVCES 226 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~---~pngia~~~dg~~l~v~~t 226 (360)
.+-+++.|+|....+ +..+|+|+.++..+++++.....-. ..+.+++++-|+.|+-++.
T Consensus 390 wtrvvfSpd~~YvaA-----------------GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAA-----------------GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred cceeEECCCCceeee-----------------ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 456678887764443 5568899999999999987654322 2456778888776665553
No 223
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.26 E-value=50 Score=32.62 Aligned_cols=147 Identities=12% Similarity=-0.009 Sum_probs=70.9
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcc-eEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFAN-GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 264 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pn-gia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G 264 (360)
....+.+|.+ |.++.......... .+...++|.+++... .++..+|..|......+. ......+-..+...++|
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---~~~~e~D~~G~v~~~~~l-~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---NRLYEIDLLGKVIWEYDL-PGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB---TEEEEE-TT--EEEEEE---TTEE-B-S-EEE-TTS
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC---CceEEEcCCCCEEEeeec-CCcccccccccEECCCC
Confidence 3568889976 87766544322222 266778887554444 679999987752222111 10000123567888999
Q ss_pred CEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeC-----CCC-----------
Q 018144 265 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-----PTG----------- 328 (360)
Q Consensus 265 ~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-----~~g----------- 328 (360)
++.+-......... + . ........|+.+|++|+++..+.- +..
T Consensus 202 n~L~l~~~~~~~~~------~----------~-----~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~ 260 (477)
T PF05935_consen 202 NLLILASETKYVDE------D----------K-----DVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGD 260 (477)
T ss_dssp -EEEEEEETTEE-T------S----------------EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSS
T ss_pred CEEEEEeecccccC------C----------C-----CccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccc
Confidence 87665542110000 0 0 001113579999999999988732 111
Q ss_pred -------CcccceeeEEEE--CCEEEEEeCCCCeEEEEe
Q 018144 329 -------QLMSFVTSGLQV--DNHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 329 -------~~~~~~t~~~~~--~g~Lylgs~~~~~i~~~~ 358 (360)
.-.-++.++..+ ++.|.+++-..+.|.+++
T Consensus 261 ~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 261 ISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp SS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred cccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 011234555554 489999999999999887
No 224
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=83.26 E-value=4.7 Score=29.55 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=17.4
Q ss_pred ccccccEEEcCCC-cEEEEeCC
Q 018144 148 LRFANDVVEASDG-SLYFTVSS 168 (360)
Q Consensus 148 ~~~~n~l~~d~dG-~l~vtd~~ 168 (360)
+.+||||.+++++ .||+++..
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~ 74 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSL 74 (86)
T ss_pred CCCCceEEEcCCCCEEEEEecc
Confidence 4689999999987 69998754
No 225
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=83.04 E-value=1.1 Score=27.31 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=16.3
Q ss_pred CCceeEEcCCCCEEEEEec
Q 018144 254 APDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 254 ~pd~i~~d~~G~lwva~~~ 272 (360)
.+.+|++|++||+||+-..
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 4789999999999998654
No 226
>PRK10115 protease 2; Provisional
Probab=82.57 E-value=65 Score=33.47 Aligned_cols=51 Identities=6% Similarity=-0.026 Sum_probs=32.5
Q ss_pred ccEEEEEcCCCCeE--EEEeCCCcCcceEEEecCCCEEEEEeCC-----CCEEEEEEecCC
Q 018144 186 HGQLLKYDPSSNIT--TLVADGFYFANGVALSRDEDYVVVCESW-----KFRCRKYWLKGE 239 (360)
Q Consensus 186 ~g~l~~~d~~tg~~--~~~~~~l~~pngia~~~dg~~l~v~~t~-----~~~i~~~~~~g~ 239 (360)
.-.|+.+|..+|+. +.+ .+. ..++++.+|++.+|++... ...|+++++...
T Consensus 152 ~~~l~v~d~~tg~~l~~~i-~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 152 QYGIRFRNLETGNWYPELL-DNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEEEECCCCCCCCccc-cCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 34688888887752 111 121 2468999999888777442 257888887543
No 227
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=82.45 E-value=49 Score=31.93 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=59.1
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhCCcccc
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 299 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 299 (360)
+|-+. -...+..|++....+- ..+ ..|..+..+++|+.+ .+|+|+..+...... +.++|....
T Consensus 191 l~TaS-~D~t~k~wdlS~g~LL--lti--~fp~si~av~lDpae~~~yiGt~~G~I~~~~-----------~~~~~~~~~ 254 (476)
T KOG0646|consen 191 LYTAS-EDRTIKLWDLSLGVLL--LTI--TFPSSIKAVALDPAERVVYIGTEEGKIFQNL-----------LFKLSGQSA 254 (476)
T ss_pred EEEec-CCceEEEEEeccceee--EEE--ecCCcceeEEEcccccEEEecCCcceEEeee-----------hhcCCcccc
Confidence 54443 3456667777543211 111 234456778888766 477776653211000 011111000
Q ss_pred ccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 300 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 300 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
. -..-.+++++..+.++....+. ..+|++... ||.|.+.+.....+.+.+.
T Consensus 255 ~-------v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 255 G-------VNQKGRHEENTQINVLVGHENE--SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred c-------ccccccccccceeeeeccccCC--cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 0 0112334566666666543331 468888775 7999998888888887763
No 228
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=82.43 E-value=37 Score=30.53 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=43.2
Q ss_pred EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 202 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 202 ~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
+...-..++...+++-+++++.+.. .+.|.+||...++. ..+. .+....-.++|.+.++..++|....
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe-~G~is~~da~~g~~-~v~s-~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHE-DGSISIYDARTGKE-LVDS-DEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecC-CCcEEEEEcccCce-eeec-hhhhccccccccccCCcceEEeccc
Confidence 3334456777889999986665554 57899999853210 0111 1112224678999999999997654
No 229
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=82.24 E-value=41 Score=30.90 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=67.9
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcC-cceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcc
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSS 284 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~ 284 (360)
...|.+.+.|... ++++.+..+.|.-||...... ...++|.+..+ ...|.+-+.|. +.||+..+
T Consensus 173 devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~--vrsiSfHPsGefllvgTdHp----------- 238 (430)
T KOG0640|consen 173 DEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP--VRSISFHPSGEFLLVGTDHP----------- 238 (430)
T ss_pred Ccccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccce--eeeEeecCCCceEEEecCCC-----------
Confidence 3568899999886 778888888898899753321 12334433222 34577778785 56666552
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEEC-CEEEEEeCCCCeEEEEe
Q 018144 285 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKVQ 358 (360)
Q Consensus 285 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~-g~Lylgs~~~~~i~~~~ 358 (360)
-+-.||-+.-....-..|+......++++.... ++||+.......|..++
T Consensus 239 ------------------------~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 239 ------------------------TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred ------------------------ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence 333344332222111224444456677777764 89999887777766543
No 230
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.55 E-value=76 Score=33.54 Aligned_cols=122 Identities=14% Similarity=0.183 Sum_probs=68.1
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE-CC--eeeEEEecCCeEEEEeCC--CcEEEEc-CCCeEEEeeccCCccccc
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DG--TWVNWKFIDSHLIICDNA--NGLHKVS-EDGVENFLSYVNGSKLRF 150 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g--~~~~~~~~~g~L~v~~~~--~gl~~~~-~~g~~~l~~~~~~~~~~~ 150 (360)
...-.++.+++..++.++. .|+.|..+| +. .++.|...++|.|+-... ..++.-. ..|+.++.-.-+
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRE------ 323 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERE------ 323 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEccc------
Confidence 4566788888877777777 677777777 43 345555566776654432 1233333 233333321111
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe---CC---CcCcceEEEecCCCEEEEE
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DG---FYFANGVALSRDEDYVVVC 224 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~---~~---l~~pngia~~~dg~~l~v~ 224 (360)
.-..++..++-+|+- ...|..+|..|.+-..+. .. -.-|..+.++|..+.+.++
T Consensus 324 rpa~~v~~n~LfYvk--------------------d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 324 RPAYAVNGNGLFYVK--------------------DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred CceEEEcCCEEEEEc--------------------cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 123456666666662 235777777553222221 11 1345778899988778888
Q ss_pred e
Q 018144 225 E 225 (360)
Q Consensus 225 ~ 225 (360)
.
T Consensus 384 s 384 (1202)
T KOG0292|consen 384 S 384 (1202)
T ss_pred e
Confidence 4
No 231
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=80.75 E-value=47 Score=30.64 Aligned_cols=72 Identities=21% Similarity=0.138 Sum_probs=44.4
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCC--eEEE-Ee--CCCcCcceEEEecCCCEEEEE
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTL-VA--DGFYFANGVALSRDEDYVVVC 224 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg--~~~~-~~--~~l~~pngia~~~dg~~l~v~ 224 (360)
.+.++++.+||.-..|-+. .+.|..++.++- +-+. +. -.+..|.-++|.||-+.++|+
T Consensus 88 ~vt~~~FsSdGK~lat~~~-----------------Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISG-----------------DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred ceeeeEEcCCCceeEEEeC-----------------CceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 4668888888876665332 233333433211 1111 11 124478899999998877777
Q ss_pred eCCCCEEEEEEecC
Q 018144 225 ESWKFRCRKYWLKG 238 (360)
Q Consensus 225 ~t~~~~i~~~~~~g 238 (360)
-..++.|+.|.+..
T Consensus 151 ~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVK 164 (420)
T ss_pred EccCCEEEEEEeee
Confidence 77788898887643
No 232
>PRK13616 lipoprotein LpqB; Provisional
Probab=80.66 E-value=70 Score=32.57 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=41.7
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEE---EcCCCCeEEE-----EeCCCcC-cceEEEecCCC
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK---YDPSSNITTL-----VADGFYF-ANGVALSRDED 219 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~---~d~~tg~~~~-----~~~~l~~-pngia~~~dg~ 219 (360)
.+..+.+.+||. |.+.- .|+|+. .....|+.+. +..++.. +..+.+..++.
T Consensus 449 ~Issl~wSpDG~RiA~i~-------------------~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~ 509 (591)
T PRK13616 449 PISELQLSRDGVRAAMII-------------------GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS 509 (591)
T ss_pred CcCeEEECCCCCEEEEEE-------------------CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE
Confidence 477888999994 54421 123333 2233354322 3334444 47788998887
Q ss_pred EEEEEeC-CCCEEEEEEecCCc
Q 018144 220 YVVVCES-WKFRCRKYWLKGER 240 (360)
Q Consensus 220 ~l~v~~t-~~~~i~~~~~~g~~ 240 (360)
|++... ....++++.++|..
T Consensus 510 -L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 510 -LVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred -EEEEecCCCCceEEEecCCcc
Confidence 555544 34568888888753
No 233
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=80.30 E-value=60 Score=31.56 Aligned_cols=49 Identities=22% Similarity=0.009 Sum_probs=32.9
Q ss_pred EEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE--EEEEEe
Q 018144 188 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR--CRKYWL 236 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~--i~~~~~ 236 (360)
.|+++|+++++.+.+.........-.++|||+.+.+.....+. |..+++
T Consensus 307 ~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 307 QIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred ceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 6999999877776665544444466789999977666643333 455554
No 234
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.28 E-value=7.2 Score=37.52 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=34.6
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCc--ceeeec--------------cCCCCCCceeEEcCCC-CEEEEE
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKG--KLETFA--------------ENLPGAPDNINLAPDG-TFWIAI 270 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~--~~~~~~--------------~~~~g~pd~i~~d~~G-~lwva~ 270 (360)
.+..|.++.|.++|||+....+.|..||+..+..- ..+++. ..+.|.|.-+.++.|| ++||++
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 45788999999999999999999999999754211 111111 1234567788899999 699987
Q ss_pred ec
Q 018144 271 IK 272 (360)
Q Consensus 271 ~~ 272 (360)
.-
T Consensus 393 SL 394 (461)
T PF05694_consen 393 SL 394 (461)
T ss_dssp --
T ss_pred ec
Confidence 53
No 235
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=79.97 E-value=50 Score=30.45 Aligned_cols=172 Identities=14% Similarity=0.144 Sum_probs=73.8
Q ss_pred CCeEEEEeCCCcEEEEcCCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEE-EE
Q 018144 116 DSHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL-KY 192 (360)
Q Consensus 116 ~g~L~v~~~~~gl~~~~~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~-~~ 192 (360)
++.++++.....+++-...| -+.+..... ...+++...+||++.... ..|.++ ..
T Consensus 114 ~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~----gs~~~~~r~~dG~~vavs------------------~~G~~~~s~ 171 (302)
T PF14870_consen 114 DGSAELAGDRGAIYRTTDGGKTWQAVVSETS----GSINDITRSSDGRYVAVS------------------SRGNFYSSW 171 (302)
T ss_dssp TTEEEEEETT--EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEE------------------TTSSEEEEE
T ss_pred CCcEEEEcCCCcEEEeCCCCCCeeEcccCCc----ceeEeEEECCCCcEEEEE------------------CcccEEEEe
Confidence 45566655444444443444 343333222 245677778888744422 124444 35
Q ss_pred cCCCCeEEEEeC-CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC-----CCCC-CceeEEcCCCC
Q 018144 193 DPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-----LPGA-PDNINLAPDGT 265 (360)
Q Consensus 193 d~~tg~~~~~~~-~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-----~~g~-pd~i~~d~~G~ 265 (360)
|+.....+.... ....-..+.+++|+. ||+... ++.|..=+ .. ...+.+.+. ..++ .-.++..+++.
T Consensus 172 ~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~~-Gg~~~~s~-~~---~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 172 DPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLAR-GGQIQFSD-DP---DDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp -TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEET-TTEEEEEE--T---TEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred cCCCccceEEccCccceehhceecCCCC-EEEEeC-CcEEEEcc-CC---CCccccccccCCcccCceeeEEEEecCCCC
Confidence 553222333322 234567788999986 666654 45555443 11 122222211 1111 22456788889
Q ss_pred EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEE-CCEE
Q 018144 266 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHL 344 (360)
Q Consensus 266 lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L 344 (360)
+|++... +.+++=...|+.-+.....+.. ......+++. +++-
T Consensus 246 ~wa~gg~-----------------------------------G~l~~S~DgGktW~~~~~~~~~-~~n~~~i~f~~~~~g 289 (302)
T PF14870_consen 246 IWAVGGS-----------------------------------GTLLVSTDGGKTWQKDRVGENV-PSNLYRIVFVNPDKG 289 (302)
T ss_dssp EEEEEST-----------------------------------T-EEEESSTTSS-EE-GGGTTS-SS---EEEEEETTEE
T ss_pred EEEEeCC-----------------------------------ccEEEeCCCCccceECccccCC-CCceEEEEEcCCCce
Confidence 9998765 4566655567765544332222 2234455554 4676
Q ss_pred EEEeCCC
Q 018144 345 YVISLTS 351 (360)
Q Consensus 345 ylgs~~~ 351 (360)
|+-.-.+
T Consensus 290 f~lG~~G 296 (302)
T PF14870_consen 290 FVLGQDG 296 (302)
T ss_dssp EEE-STT
T ss_pred EEECCCc
Confidence 6655433
No 236
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=79.87 E-value=24 Score=32.37 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=50.0
Q ss_pred CeEEEEeCCCcEEEEcCCC--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEc
Q 018144 117 SHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 193 (360)
Q Consensus 117 g~L~v~~~~~gl~~~~~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d 193 (360)
.++.||+..+-++.++-.| ++.+...-. ....+++. ++.+.|. +|.. ..++.+|++.
T Consensus 406 eh~iVCNrsntv~imn~qGQvVrsfsSGkR-EgGdFi~~-~lSpkGewiYci------------------gED~vlYCF~ 465 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNMQGQVVRSFSSGKR-EGGDFINA-ILSPKGEWIYCI------------------GEDGVLYCFS 465 (508)
T ss_pred ceEEEEcCCCeEEEEeccceEEeeeccCCc-cCCceEEE-EecCCCcEEEEE------------------ccCcEEEEEE
Confidence 4578888777788888555 555643221 11234544 4678885 4442 2356789998
Q ss_pred CCCCeEEEEeCC-CcCcceEEEecCCC
Q 018144 194 PSSNITTLVADG-FYFANGVALSRDED 219 (360)
Q Consensus 194 ~~tg~~~~~~~~-l~~pngia~~~dg~ 219 (360)
..+|+++..... -..+-|++-.|-.+
T Consensus 466 ~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 466 VLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred eecCceeeeeecccccccccccCcccc
Confidence 888888765432 23456666666554
No 237
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=79.55 E-value=71 Score=31.97 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=61.2
Q ss_pred EEEEEEecCCcCcceeeeccCCCC-CCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 018144 230 RCRKYWLKGERKGKLETFAENLPG-APDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 307 (360)
Q Consensus 230 ~i~~~~~~g~~~~~~~~~~~~~~g-~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 307 (360)
.|++|++++.+..-... . ..+| +.+..+.|+ +|+|=|++.....+ +-......
T Consensus 249 ~I~kf~~~~~~~~y~~s-g-~V~G~llnqFsmdE~~G~LRvaTT~~~~~-----------------------~~~~~~s~ 303 (521)
T PF09826_consen 249 TIYKFALDGGKIEYVGS-G-SVPGYLLNQFSMDEYDGYLRVATTSGNWW-----------------------WDSEDTSS 303 (521)
T ss_pred EEEEEEccCCcEEEEEE-E-EECcEEcccccEeccCCEEEEEEecCccc-----------------------ccCCCCce
Confidence 46777776533221111 0 1334 345677886 67888887652100 00013345
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEeCCC-CeEEEEeC
Q 018144 308 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS-NFIGKVQL 359 (360)
Q Consensus 308 ~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs~~~-~~i~~~~l 359 (360)
+.|+.+|++-+++-.+.+-. +--.|.++.+.+++.|+-++.. +-+-+++|
T Consensus 304 N~lyVLD~~L~~vG~l~~la--~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDL 354 (521)
T PF09826_consen 304 NNLYVLDEDLKIVGSLEGLA--PGERIYSVRFMGDRAYLVTFRQVDPLFVIDL 354 (521)
T ss_pred EEEEEECCCCcEeEEccccC--CCceEEEEEEeCCeEEEEEEeecCceEEEEC
Confidence 78999997777777665432 1236889999999999998865 55555554
No 238
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=78.89 E-value=70 Score=31.56 Aligned_cols=86 Identities=14% Similarity=0.256 Sum_probs=40.2
Q ss_pred CCeEEEEeC-----CCcEEEEcCCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEE
Q 018144 116 DSHLIICDN-----ANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 189 (360)
Q Consensus 116 ~g~L~v~~~-----~~gl~~~~~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l 189 (360)
.+.||+... ....+.+|.+| ++........ ....+..-++|++++... ..+
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~----~~~~~~~l~nG~ll~~~~-------------------~~~ 169 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSG----SDNSFKQLPNGNLLIGSG-------------------NRL 169 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT------SSEEE-TTS-EEEEEB-------------------TEE
T ss_pred CCcEEEEeCCCCCCCceEEEECCCccEEEEEccCcc----ccceeeEcCCCCEEEecC-------------------Cce
Confidence 345665554 24577777888 6554322111 111156678899888532 467
Q ss_pred EEEcCCCCeEEEEe--CC--CcCcceEEEecCCCEEEEEe
Q 018144 190 LKYDPSSNITTLVA--DG--FYFANGVALSRDEDYVVVCE 225 (360)
Q Consensus 190 ~~~d~~tg~~~~~~--~~--l~~pngia~~~dg~~l~v~~ 225 (360)
..+|.. |++.... .+ ..+-+.+...++|+.|+.+.
T Consensus 170 ~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 170 YEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp EEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred EEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence 788876 5543221 11 12345677777877666665
No 239
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=78.79 E-value=65 Score=33.11 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=40.6
Q ss_pred EEEEEcCCCCeEEEEeCCC----cCcceEEEecCCCEEEEE-eCCCCEEEEEEecCC-----cCcceeeeccCCCCCCce
Q 018144 188 QLLKYDPSSNITTLVADGF----YFANGVALSRDEDYVVVC-ESWKFRCRKYWLKGE-----RKGKLETFAENLPGAPDN 257 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~l----~~pngia~~~dg~~l~v~-~t~~~~i~~~~~~g~-----~~~~~~~~~~~~~g~pd~ 257 (360)
.|-.||-++|+..+...+- ..+--+.++|.| +|++ .-....|-.||.-.+ ..+..+... .....+|.
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg--iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VT-G~kF~nDC 695 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG--IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVT-GVKFLNDC 695 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCCc--cEEEEeecCCceEEEEeccchhhhhhcCcchhee-eeeecccc
Confidence 3555666666655544332 223446677877 4444 444556777776422 122333221 11123443
Q ss_pred ---eEEcCCCCEEE
Q 018144 258 ---INLAPDGTFWI 268 (360)
Q Consensus 258 ---i~~d~~G~lwv 268 (360)
|.+..||.|+|
T Consensus 696 kHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFV 709 (1080)
T ss_pred hhheeecCCceEEE
Confidence 66788998777
No 240
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=78.54 E-value=3.2 Score=25.18 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=16.3
Q ss_pred EEcCCCCEEEEecCCeEEEEE
Q 018144 85 SMDKNGVIYTATRDGWIKRLQ 105 (360)
Q Consensus 85 ~~d~~G~l~v~~~~G~I~~~~ 105 (360)
+++ +|.+|+++.+|.++.+|
T Consensus 18 ~v~-~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 18 AVA-GGRVYVGTGDGNLYALD 37 (40)
T ss_dssp EEC-TSEEEEE-TTSEEEEEE
T ss_pred EEE-CCEEEEEcCCCEEEEEe
Confidence 555 78999999999999987
No 241
>smart00284 OLF Olfactomedin-like domains.
Probab=78.34 E-value=50 Score=29.57 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=37.3
Q ss_pred CcEEEEeCCCCCCCccceecccccCCccE-EEEEcCCCCeEEEEeCCCc----CcceEEEecCCCEEEEEeCCCCEEEEE
Q 018144 160 GSLYFTVSSSKYLPHEYCLDILEGKPHGQ-LLKYDPSSNITTLVADGFY----FANGVALSRDEDYVVVCESWKFRCRKY 234 (360)
Q Consensus 160 G~l~vtd~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tg~~~~~~~~l~----~pngia~~~dg~~l~v~~t~~~~i~~~ 234 (360)
|.||++++. .....+ -+.||..+++.+...-.+. ....+..+|..+.||+-+.+ .+..|
T Consensus 186 GvLY~~~s~--------------~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng--~~l~Y 249 (255)
T smart00284 186 GILYVTRSL--------------GSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWNNG--HLVHY 249 (255)
T ss_pred eEEEEEccC--------------CCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEeCC--eEEEE
Confidence 789998763 112234 4568887765443221222 23357888988889998854 46667
Q ss_pred Ee
Q 018144 235 WL 236 (360)
Q Consensus 235 ~~ 236 (360)
++
T Consensus 250 ~v 251 (255)
T smart00284 250 DI 251 (255)
T ss_pred EE
Confidence 65
No 242
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=78.10 E-value=10 Score=37.99 Aligned_cols=70 Identities=21% Similarity=0.155 Sum_probs=42.6
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CC--cCcceEEEecCCCEEEEEeC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GF--YFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l--~~pngia~~~dg~~l~v~~t 226 (360)
.+.+++..++|+...|- ..+|+|..|+|.+++...... +- ....-|.+.-||..++++..
T Consensus 722 qIf~~AWSpdGr~~AtV-----------------cKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATV-----------------CKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred ceeEEEECCCCcceeee-----------------ecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc
Confidence 46789999999877752 346899999998665433211 11 12234666777776666644
Q ss_pred CC---CEEEEEEe
Q 018144 227 WK---FRCRKYWL 236 (360)
Q Consensus 227 ~~---~~i~~~~~ 236 (360)
.. ..|..|+.
T Consensus 785 dk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 785 DKSSERQVQMYDA 797 (1012)
T ss_pred cccchhhhhhhhh
Confidence 32 23555553
No 243
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=78.01 E-value=57 Score=30.06 Aligned_cols=151 Identities=9% Similarity=0.032 Sum_probs=74.2
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 230 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~ 230 (360)
+..++.++||+..+|-+. ...+..+|...|....-..--.-..+..+.|-.....++......
T Consensus 68 i~sl~WS~dgr~LltsS~-----------------D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s 130 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSR-----------------DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES 130 (405)
T ss_pred eeEEEecCCCCEeeeecC-----------------CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC
Confidence 557889999998887443 334555665444432111111112355555533223333222222
Q ss_pred EEEEEecCCcCcceeeeccC----CCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 018144 231 CRKYWLKGERKGKLETFAEN----LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 305 (360)
Q Consensus 231 i~~~~~~g~~~~~~~~~~~~----~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 305 (360)
-+.++.+.+ ...++... +...++...+|+.|+ |+.|+..
T Consensus 131 p~vi~~s~~---~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK--------------------------------- 174 (405)
T KOG1273|consen 131 PVVIDFSDP---KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK--------------------------------- 174 (405)
T ss_pred cEEEEecCC---ceeeccCCCccccccccccccccCCCCEEEEecCc---------------------------------
Confidence 233333221 11122111 122344456899996 5555544
Q ss_pred CceEEEEECCCC-cEEEEEeCCCCCcccceeeEEEE-CCEEEEEeCCCCeEEEEeC
Q 018144 306 GGAHLIHVAEDG-TIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 306 ~~~~v~~~~~~g-~~~~~~~~~~g~~~~~~t~~~~~-~g~Lylgs~~~~~i~~~~l 359 (360)
|.+..++.+. +.+.++.-.. ...+-++... .|+.++-+-...-|..+++
T Consensus 175 --Gkllv~~a~t~e~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 175 --GKLLVYDAETLECVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred --ceEEEEecchheeeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 7888888654 4455443221 2345455444 5777776666666665553
No 244
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.99 E-value=4 Score=23.29 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=15.2
Q ss_pred CCCEEEEecCCeEEEEE--CCe
Q 018144 89 NGVIYTATRDGWIKRLQ--DGT 108 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~ 108 (360)
+|.+|+++.+|.++.++ +|+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCc
Confidence 56788888888888887 554
No 245
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=77.97 E-value=57 Score=30.00 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=63.2
Q ss_pred CCeEEEEeCC-CcEEEEc-CCC-eEEEeecc-------CCccccccccEEEc----CCCcEEEEeCCCCCCCccceeccc
Q 018144 116 DSHLIICDNA-NGLHKVS-EDG-VENFLSYV-------NGSKLRFANDVVEA----SDGSLYFTVSSSKYLPHEYCLDIL 181 (360)
Q Consensus 116 ~g~L~v~~~~-~gl~~~~-~~g-~~~l~~~~-------~~~~~~~~n~l~~d----~dG~l~vtd~~~~~~~~~~~~~~~ 181 (360)
+|.+.|+... .-+++++ ++| +....... .+..+.+-.+..+- ++++|=+-|....-. ..
T Consensus 154 ~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~-------~~ 226 (299)
T PF14269_consen 154 DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF-------NG 226 (299)
T ss_pred CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC-------CC
Confidence 4566665544 5788888 777 44322111 11123334444444 566666655421000 01
Q ss_pred ccCCccEEEEEcCCCCeEEEEeCCCcCcc--------eEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 182 EGKPHGQLLKYDPSSNITTLVADGFYFAN--------GVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 182 ~~~~~g~l~~~d~~tg~~~~~~~~l~~pn--------gia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
.....+.++.+|+.+.+++.+..-...+. .+..-++|+ ++|++...+++.-|+.+|+
T Consensus 227 ~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G~ 291 (299)
T PF14269_consen 227 TEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDGE 291 (299)
T ss_pred CcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCCC
Confidence 12345789999998776655432111122 244556776 7788887788888877663
No 246
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=77.81 E-value=65 Score=30.59 Aligned_cols=53 Identities=8% Similarity=0.077 Sum_probs=35.7
Q ss_pred CccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 185 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
..+.|..+|-.||+.....+.-.....+.++.||+ ++++.....+|..+|+..
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCC
Confidence 35567778887776544333222346788999997 666766677888888753
No 247
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=77.26 E-value=46 Score=32.23 Aligned_cols=67 Identities=22% Similarity=0.239 Sum_probs=39.5
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
+..+++-.||+|..+ +...|-|-.||.++...-..... ..-.+-+.++++++.++++.+. .
T Consensus 71 v~s~~fR~DG~Llaa-----------------GD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD-d 132 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAA-----------------GDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD-D 132 (487)
T ss_pred eeEEEeecCCeEEEc-----------------cCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC-C
Confidence 556677788988774 33456677787543211111112 2234567788888878777764 4
Q ss_pred EEEEEE
Q 018144 230 RCRKYW 235 (360)
Q Consensus 230 ~i~~~~ 235 (360)
++.+||
T Consensus 133 ~v~k~~ 138 (487)
T KOG0310|consen 133 KVVKYW 138 (487)
T ss_pred ceEEEE
Confidence 566665
No 248
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=75.85 E-value=73 Score=30.75 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=29.7
Q ss_pred EEEEEcCCCCeEEEEe--CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 188 QLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~--~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
+|+.+...-.++..+. .-..+.|.++++++|++++++---..|+-|++.
T Consensus 405 rLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 405 RLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred EEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 5666654322333321 123478999999999977777544556666654
No 249
>KOG4328 consensus WD40 protein [Function unknown]
Probab=74.51 E-value=86 Score=30.33 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=20.9
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
..|...++|++.. +++....++|..|+-
T Consensus 371 sV~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 371 SVNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred eeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 4578889998876 556556678888885
No 250
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=73.91 E-value=90 Score=30.32 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=96.6
Q ss_pred CCcceEEEcCCCC-EEEEecCCeEEEEE--CCeeeEEEe----------cCCeEEEEeC-CCcEEEEcCCCeEE--Eeec
Q 018144 79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKF----------IDSHLIICDN-ANGLHKVSEDGVEN--FLSY 142 (360)
Q Consensus 79 ~~Pe~i~~d~~G~-l~v~~~~G~I~~~~--~g~~~~~~~----------~~g~L~v~~~-~~gl~~~~~~g~~~--l~~~ 142 (360)
.||-.+-..++|. |.+|...|-|-.+| +++...-.. -...-|+|.+ .+-++.||..|.+. +...
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence 7999998888874 66777888888888 554321100 0011122222 23355555555222 2111
Q ss_pred cCCcccc-ccccE---EEcCCCcEEEEeCCCC-----CCCccceecccccCCccEEEEEcCCCCeEEEEeCC--------
Q 018144 143 VNGSKLR-FANDV---VEASDGSLYFTVSSSK-----YLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-------- 205 (360)
Q Consensus 143 ~~~~~~~-~~n~l---~~d~dG~l~vtd~~~~-----~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-------- 205 (360)
..-..+. .|+.. +....|.+=.-|.+.- +..+.-..+++...+.+.|..+--..|.+..+...
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 1111111 12221 2233444433343310 10111112233344444455544444444333221
Q ss_pred ---CcCcceEEEecCCCEEEEEeCC-CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHh
Q 018144 206 ---FYFANGVALSRDEDYVVVCESW-KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKIL 281 (360)
Q Consensus 206 ---l~~pngia~~~dg~~l~v~~t~-~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~ 281 (360)
..-.++||++++|.++ +.++ ..++..+|+..- .+...+. .|-...++.++..|.+-++....-..+-|++
T Consensus 290 LcH~g~V~siAv~~~G~YM--aTtG~Dr~~kIWDlR~~--~ql~t~~--tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYM--ATTGLDRKVKIWDLRNF--YQLHTYR--TPHPASNLSLSQKGLLALSYGDHVQIWKDAL 363 (545)
T ss_pred HhcCCCcceEEECCCCcEE--eecccccceeEeeeccc--cccceee--cCCCccccccccccceeeecCCeeeeehhhh
Confidence 2235799999999644 3333 345666666431 1221221 1223467778888877666544444445555
Q ss_pred hc-----chhHHHHHHh
Q 018144 282 NS-----SKLIKHVLAA 293 (360)
Q Consensus 282 ~~-----~~~~r~~~~~ 293 (360)
.. .|.+++.+..
T Consensus 364 ~~s~~~~~pYm~H~~~~ 380 (545)
T KOG1272|consen 364 KGSGHGETPYMNHRCGG 380 (545)
T ss_pred cCCCCCCcchhhhccCc
Confidence 42 3666665554
No 251
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=73.73 E-value=46 Score=35.29 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=45.6
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CCCcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.+.|++.++++.+.++-+ -.+.|+.+|..+.+..... .....+-|+.+||-|+ .+.+.+ .
T Consensus 131 DV~Dv~Wsp~~~~lvS~s-----------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqs-d 191 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVS-----------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-YFASQS-D 191 (942)
T ss_pred ccceeccCCCccEEEEec-----------------ccceEEEEccccceeeeeeecccccccceEECCccC-eeeeec-C
Confidence 466888899988888633 3578999998766544333 3456789999999997 334444 4
Q ss_pred CEEEEEE
Q 018144 229 FRCRKYW 235 (360)
Q Consensus 229 ~~i~~~~ 235 (360)
.|-.+++
T Consensus 192 Drtikvw 198 (942)
T KOG0973|consen 192 DRTLKVW 198 (942)
T ss_pred CceEEEE
Confidence 4555544
No 252
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=73.31 E-value=1.2e+02 Score=31.29 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=76.7
Q ss_pred EEEcCCCCEEEEecCCeEEEEE--CCeee-E------------EEe--cCCeEEEEeCCCcEEEE-c-CCC--eEEEeec
Q 018144 84 ASMDKNGVIYTATRDGWIKRLQ--DGTWV-N------------WKF--IDSHLIICDNANGLHKV-S-EDG--VENFLSY 142 (360)
Q Consensus 84 i~~d~~G~l~v~~~~G~I~~~~--~g~~~-~------------~~~--~~g~L~v~~~~~gl~~~-~-~~g--~~~l~~~ 142 (360)
++++++|.+.+..-+..|..++ +++.. . +.. .+..|+.+. ..++.++ . ++| ++.+...
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccceEEEEEcccchHhHhHhhc
Confidence 8999999776655556677777 66542 1 111 122355444 3344443 3 555 3333221
Q ss_pred cCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcC-cceEEEecCCCE-
Q 018144 143 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDY- 220 (360)
Q Consensus 143 ~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~-pngia~~~dg~~- 220 (360)
..+ ..-.+++++.|.+.-| +...+.+-.+|-+.+..+....++.. ...+.+.|+-+.
T Consensus 104 He~----Pvi~ma~~~~g~LlAt-----------------ggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~ 162 (775)
T KOG0319|consen 104 HEA----PVITMAFDPTGTLLAT-----------------GGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW 162 (775)
T ss_pred cCC----CeEEEEEcCCCceEEe-----------------ccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh
Confidence 122 1346788998876654 33467788888776766666666443 456777776543
Q ss_pred EEEEeCCCCEEEEEEecC
Q 018144 221 VVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g 238 (360)
++++....+.+..|++..
T Consensus 163 lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 163 LLASGATDGTVRVWNLND 180 (775)
T ss_pred heeecCCCceEEEEEccc
Confidence 334444566788888753
No 253
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=73.17 E-value=83 Score=29.54 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=54.7
Q ss_pred EEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccc
Q 018144 221 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 300 (360)
Q Consensus 221 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 300 (360)
|..+..-.++|..||....+ .+..-....+ ...+.......|+.++..
T Consensus 300 L~A~G~vdG~i~iyD~a~~~---~R~~c~he~~-V~~l~w~~t~~l~t~c~~---------------------------- 347 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAAST---LRHICEHEDG-VTKLKWLNTDYLLTACAN---------------------------- 347 (399)
T ss_pred hhhcccccceEEEEecccch---hheeccCCCc-eEEEEEcCcchheeeccC----------------------------
Confidence 55555556788888874322 2222212111 223444555567776665
Q ss_pred cccCCCceEEEEECC-CCcEEEEEeCCCCCcccceeeEEE-ECCEEEEEeCCCCeEEEEeC
Q 018144 301 FITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 301 ~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~-~~g~Lylgs~~~~~i~~~~l 359 (360)
+.|..+|. .|+.+..|..-. . .+-..+. .++++.+..-..+...+|..
T Consensus 348 -------g~v~~wDaRtG~l~~~y~GH~---~-~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 348 -------GKVRQWDARTGQLKFTYTGHQ---M-GILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred -------ceEEeeeccccceEEEEecCc---h-heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 67888885 788888887533 2 2333333 46777777666666666653
No 254
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.01 E-value=77 Score=31.43 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=56.1
Q ss_pred EEEeCCCcEEEEc-C-CCeEEEe--eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCC
Q 018144 120 IICDNANGLHKVS-E-DGVENFL--SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 120 ~v~~~~~gl~~~~-~-~g~~~l~--~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
+|+-.+++++++| + .|...+. ..-+=...+-.+.++...+|.|-++ ...|.|-.||.-
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~Ivvg------------------S~~GdIRLYdri 459 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVG------------------SLKGDIRLYDRI 459 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEe------------------ecCCcEEeehhh
Confidence 5666678899999 3 3421221 1111011123456677788888883 345777778864
Q ss_pred CCeEEEEeCCCcCc-ceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 196 SNITTLVADGFYFA-NGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 196 tg~~~~~~~~l~~p-ngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
..+.+....++..| -+|..+.||+ ++++.+.+ .|+.++.
T Consensus 460 ~~~AKTAlPgLG~~I~hVdvtadGK-wil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 460 GRRAKTALPGLGDAIKHVDVTADGK-WILATCKT-YLLLIDT 499 (644)
T ss_pred hhhhhhcccccCCceeeEEeeccCc-EEEEeccc-EEEEEEE
Confidence 33334445565544 5788999998 55565544 3555554
No 255
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=72.17 E-value=1.4e+02 Score=31.90 Aligned_cols=179 Identities=15% Similarity=0.203 Sum_probs=98.8
Q ss_pred CCeEEEEeCC-CcEEEEcCCC--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEE
Q 018144 116 DSHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 191 (360)
Q Consensus 116 ~g~L~v~~~~-~gl~~~~~~g--~~~l~~~~~~~~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~ 191 (360)
++.+|.++.. ..+......+ ...+. +...-.+.++++|- .+++|.||... ..+.+
T Consensus 448 ~~~i~~~d~~~~~i~~~~~~~~~~~~~~----~~g~~~~~~lavD~~~~~~y~tDe~~-----------------~~i~v 506 (877)
T KOG1215|consen 448 NNRIYWADLSDEKICRASQDGSSECELC----GDGLCIPEGLAVDWIGDNIYWTDEGN-----------------CLIEV 506 (877)
T ss_pred CCEEEEEeccCCeEeeeccCCCccceEe----ccCccccCcEEEEeccCCceecccCC-----------------ceeEE
Confidence 4567777755 3444444333 11111 11124578899995 45899998651 22333
Q ss_pred EcCCCC-eEEEEeCCCcCcceEEEecCCCEEEEEeCCC-CEEEEEEecCCcCcceeeeccCCCCCCceeEEcCC-CCEEE
Q 018144 192 YDPSSN-ITTLVADGFYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWI 268 (360)
Q Consensus 192 ~d~~tg-~~~~~~~~l~~pngia~~~dg~~l~v~~t~~-~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~-G~lwv 268 (360)
.+.+.. +...+...+..|..++++|-...+|+++.+. .+|.|-.++|... ..........|.++++|-. ..+|-
T Consensus 507 ~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~---~~l~~~~~~~p~glt~d~~~~~~yw 583 (877)
T KOG1215|consen 507 ADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSER---AVLVTNGILWPNGLTIDYETDRLYW 583 (877)
T ss_pred EEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCc---eEEEeCCccCCCcceEEeecceeEE
Confidence 332212 2222334557899999999888999999873 3566666655322 2222222347999999854 45555
Q ss_pred EEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcccceeeEEEECCEEEEEe
Q 018144 269 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS 348 (360)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~Lylgs 348 (360)
+.... ...+...+-+|+.-+ ...... ...+-.+...++++|-..
T Consensus 584 ~d~~~---------------------------------~~~i~~~~~~g~~r~-~~~~~~--~~~p~~~~~~~~~iyw~d 627 (877)
T KOG1215|consen 584 ADAKL---------------------------------DYTIESANMDGQNRR-VVDSED--LPHPFGLSVFEDYIYWTD 627 (877)
T ss_pred EcccC---------------------------------CcceeeeecCCCceE-Eecccc--CCCceEEEEecceeEEee
Confidence 55431 114556666665544 222221 234555666677777666
Q ss_pred CCCCeE
Q 018144 349 LTSNFI 354 (360)
Q Consensus 349 ~~~~~i 354 (360)
.....+
T Consensus 628 ~~~~~~ 633 (877)
T KOG1215|consen 628 WSNRAI 633 (877)
T ss_pred ccccce
Confidence 655543
No 256
>PHA02790 Kelch-like protein; Provisional
Probab=71.53 E-value=1.1e+02 Score=30.21 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=55.6
Q ss_pred CCCEEEEec-C--CeEEEEE--CCeeeEE------------EecCCeEEEEeCCC----cEEEEc-CCC-eEEEeeccCC
Q 018144 89 NGVIYTATR-D--GWIKRLQ--DGTWVNW------------KFIDSHLIICDNAN----GLHKVS-EDG-VENFLSYVNG 145 (360)
Q Consensus 89 ~G~l~v~~~-~--G~I~~~~--~g~~~~~------------~~~~g~L~v~~~~~----gl~~~~-~~g-~~~l~~~~~~ 145 (360)
+|.||+... + ..+.+++ ++++... ...+|+|||..... -+.++| .++ .+..+. ..-
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCC
Confidence 677876542 1 2466676 4444322 12367888865322 234556 333 322211 111
Q ss_pred ccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc---ceEEEecCCCEEE
Q 018144 146 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVV 222 (360)
Q Consensus 146 ~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p---ngia~~~dg~~l~ 222 (360)
. ....-++.-+|.||+. .|.+-+|||++++++.+. .+..| .|++.- +| .+|
T Consensus 397 ~---r~~~~~~~~~~~IYv~--------------------GG~~e~ydp~~~~W~~~~-~m~~~r~~~~~~v~-~~-~IY 450 (480)
T PHA02790 397 P---HYKSCALVFGRRLFLV--------------------GRNAEFYCESSNTWTLID-DPIYPRDNPELIIV-DN-KLL 450 (480)
T ss_pred c---cccceEEEECCEEEEE--------------------CCceEEecCCCCcEeEcC-CCCCCccccEEEEE-CC-EEE
Confidence 1 1112223356899993 244678999988887654 23322 244443 44 377
Q ss_pred EEe
Q 018144 223 VCE 225 (360)
Q Consensus 223 v~~ 225 (360)
+..
T Consensus 451 viG 453 (480)
T PHA02790 451 LIG 453 (480)
T ss_pred EEC
Confidence 774
No 257
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=71.44 E-value=70 Score=27.97 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred CEEEEe--cCCeEEEEE--CCeeeEEEecCCeEEEEeCCCcEEEEc---CCC-eEEEeeccCCcccc--ccccEEEcCCC
Q 018144 91 VIYTAT--RDGWIKRLQ--DGTWVNWKFIDSHLIICDNANGLHKVS---EDG-VENFLSYVNGSKLR--FANDVVEASDG 160 (360)
Q Consensus 91 ~l~v~~--~~G~I~~~~--~g~~~~~~~~~g~L~v~~~~~gl~~~~---~~g-~~~l~~~~~~~~~~--~~n~l~~d~dG 160 (360)
+||+.+ .+.....+. +|.+..+..=.|-++++......++|- -+- +.++-+...+..+. .+..+++||.|
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Q ss_pred cEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 161 SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 161 ~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
++.++ +........||-..++..+ +.........+.++|.-.+++.++. ...|..-|+.|.
T Consensus 244 rll~s-----------------g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy-d~~ikltdlqgd 305 (350)
T KOG0641|consen 244 RLLAS-----------------GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY-DMKIKLTDLQGD 305 (350)
T ss_pred ceeee-----------------ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc-cceEEEeecccc
Q ss_pred cCcceeee
Q 018144 240 RKGKLETF 247 (360)
Q Consensus 240 ~~~~~~~~ 247 (360)
...+..+.
T Consensus 306 la~el~~~ 313 (350)
T KOG0641|consen 306 LAHELPIM 313 (350)
T ss_pred hhhcCceE
No 258
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.66 E-value=1.4e+02 Score=30.96 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=71.9
Q ss_pred CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhc
Q 018144 205 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNS 283 (360)
Q Consensus 205 ~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~ 283 (360)
...+...|+|.|-.+..+++.+-.++|..+.+...+ +..+. .+..+...+++.+||. ..||+..
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~----------- 472 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWN-DLRDLITAVCYSPDGKGAVIGTFN----------- 472 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeeh-hhhhhheeEEeccCCceEEEEEec-----------
Confidence 345678999999766688888888888777664422 22233 2445677889999895 6778876
Q ss_pred chhHHHHHHhCCccccccccCCCceEEEEECCCCcEE-EEE--eCCCC--CcccceeeEEEEC---CEEEEEeCCCCeEE
Q 018144 284 SKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-RNL--VDPTG--QLMSFVTSGLQVD---NHLYVISLTSNFIG 355 (360)
Q Consensus 284 ~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-~~~--~~~~g--~~~~~~t~~~~~~---g~Lylgs~~~~~i~ 355 (360)
|...-|+..|..+ ..+ ....+ ....-||++...- ++|.|++ +..+|.
T Consensus 473 ------------------------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIR 527 (712)
T KOG0283|consen 473 ------------------------GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIR 527 (712)
T ss_pred ------------------------cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceE
Confidence 4555566655332 222 22221 1223478887762 4566655 467788
Q ss_pred EEeC
Q 018144 356 KVQL 359 (360)
Q Consensus 356 ~~~l 359 (360)
++++
T Consensus 528 I~d~ 531 (712)
T KOG0283|consen 528 IYDG 531 (712)
T ss_pred EEec
Confidence 8775
No 259
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=70.18 E-value=99 Score=29.21 Aligned_cols=137 Identities=13% Similarity=0.143 Sum_probs=83.3
Q ss_pred CCCcceEEEcCCCCEEEEe-cCCeEEEEE--C---CeeeEE---------------------------------E-ecCC
Q 018144 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--D---GTWVNW---------------------------------K-FIDS 117 (360)
Q Consensus 78 ~~~Pe~i~~d~~G~l~v~~-~~G~I~~~~--~---g~~~~~---------------------------------~-~~~g 117 (360)
-..-++|.++++|..+++. .|..|-..+ . ...+.. . .+.+
T Consensus 193 k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~ 272 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT 272 (423)
T ss_pred ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC
Confidence 3567889999999887765 666554443 1 111110 0 0133
Q ss_pred eEEEEeCCCcEEEEc-CCC--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcC
Q 018144 118 HLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 194 (360)
Q Consensus 118 ~L~v~~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 194 (360)
.+|-+.+++-|...| .+| ...+... ...+.+...+.-++.++-++ .--+..+||
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~DP 329 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGSS-----------------DRHIRLWDP 329 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecCC-----------------CCceeecCC
Confidence 477777777777777 555 3333221 23566677777777776332 334666898
Q ss_pred CCCeEEEEe----CCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 195 SSNITTLVA----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 195 ~tg~~~~~~----~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
.++.-.... ..-....++.++|.+.+.+++.+..+.+..+|..
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 766433322 1223567889999888999999888888777764
No 260
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=66.77 E-value=8.9 Score=22.99 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=8.8
Q ss_pred CEEEEecCCeEEEEE
Q 018144 91 VIYTATRDGWIKRLQ 105 (360)
Q Consensus 91 ~l~v~~~~G~I~~~~ 105 (360)
.+|+++.+|.|+.+|
T Consensus 2 ~v~~~~~~g~l~AlD 16 (38)
T PF01011_consen 2 RVYVGTPDGYLYALD 16 (38)
T ss_dssp EEEEETTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEE
Confidence 455555566666665
No 261
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=66.55 E-value=1.2e+02 Score=28.64 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=35.7
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 271 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~ 271 (360)
....+.++|-+..++.+-.....|..||+.....-.. +. +..-++.|+..+++..+++..
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K-Vi---~~mRTN~IswnPeafnF~~a~ 248 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK-VI---LTMRTNTICWNPEAFNFVAAN 248 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccce-ee---eeccccceecCccccceeecc
Confidence 3356777887766777665677899999753322111 11 112366777777765555543
No 262
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=66.07 E-value=1.1e+02 Score=28.14 Aligned_cols=158 Identities=13% Similarity=0.045 Sum_probs=83.2
Q ss_pred CCCEEEEecCCeEEEEE-CC--eee------------EEEecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCcccccc
Q 018144 89 NGVIYTATRDGWIKRLQ-DG--TWV------------NWKFIDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFA 151 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~-~g--~~~------------~~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~ 151 (360)
+...|++++..+|..+| .. +.+ .+...++-.||++...|++.+| .+- .-+++....... ...
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~-~d~ 174 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG-GDT 174 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC-CCc
Confidence 66899999777777777 21 111 2233456699999999999999 433 222322111110 112
Q ss_pred ccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC--C-cCcceEEEecCCCEEEEEeCCC
Q 018144 152 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--F-YFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 152 n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~--l-~~pngia~~~dg~~l~v~~t~~ 228 (360)
.++++.. .+-|+++ .+++|..+|-+.-.--++... . ....++..+++ +.|++.-.
T Consensus 175 ~~v~ISG-n~AYvA~------------------~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~- 232 (370)
T COG5276 175 HDVAISG-NYAYVAW------------------RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYD- 232 (370)
T ss_pred eeEEEec-CeEEEEE------------------eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcc-
Confidence 4666653 3677754 235676666543222222211 1 24455666554 46666653
Q ss_pred CEEEEEEecCCcCcceeeeccCCCCCCcee---EEcCCCCEEEEEec
Q 018144 229 FRCRKYWLKGERKGKLETFAENLPGAPDNI---NLAPDGTFWIAIIK 272 (360)
Q Consensus 229 ~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i---~~d~~G~lwva~~~ 272 (360)
..+...+.++++ ...++..-.+..|.++ .+ ++...|++...
T Consensus 233 egvlivd~s~~s--sp~~~gsyet~~p~~~s~v~V-s~~~~Yvadga 276 (370)
T COG5276 233 EGVLIVDVSGPS--SPTVFGSYETSNPVSISTVPV-SGEYAYVADGA 276 (370)
T ss_pred cceEEEecCCCC--CceEeeccccCCcccccceec-ccceeeeeccc
Confidence 458888877653 2223322222234444 22 23357777654
No 263
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=65.84 E-value=17 Score=34.45 Aligned_cols=99 Identities=19% Similarity=0.328 Sum_probs=50.1
Q ss_pred CCCEEEEe-cCCeEEEEE-CC-eeeEEEecCCeEEEEeCC--Cc-EEEEcCCC----eEEEeeccCCccc-cccccEEEc
Q 018144 89 NGVIYTAT-RDGWIKRLQ-DG-TWVNWKFIDSHLIICDNA--NG-LHKVSEDG----VENFLSYVNGSKL-RFANDVVEA 157 (360)
Q Consensus 89 ~G~l~v~~-~~G~I~~~~-~g-~~~~~~~~~g~L~v~~~~--~g-l~~~~~~g----~~~l~~~~~~~~~-~~~n~l~~d 157 (360)
|-.||+.. --|.|.++| .. .-..+ .|.||++..- .. +..+..++ ++.+ .+.|..+ ..|.=+..+
T Consensus 323 DRFLYvs~WLHGDirQYdIsDP~n~kL---tgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~--~vKGrkl~GGPQMlQLS 397 (476)
T KOG0918|consen 323 DRFLYVSNWLHGDIRQYDISDPKNPKL---TGQIFLGGSIQKGSPVKVLEEEGLKKQPEAL--YVKGRKLRGGPQMLQLS 397 (476)
T ss_pred CcEEEEEeeeecceeeeccCCCCCcce---EEEEEECcEeecCCceEEeccccccCCCccc--eecCccccCCceeEEec
Confidence 56788888 467788887 22 11111 4667776532 11 22222222 2222 1223322 246667777
Q ss_pred CCC-cEEEEeCCC-CCCCccceecccccCCccEEEEEcCC
Q 018144 158 SDG-SLYFTVSSS-KYLPHEYCLDILEGKPHGQLLKYDPS 195 (360)
Q Consensus 158 ~dG-~l~vtd~~~-~~~~~~~~~~~~~~~~~g~l~~~d~~ 195 (360)
-|| ++|+|++-. +|+.+-+- ++++ ..+.++++|-+
T Consensus 398 LDGKRLYVt~SLys~WD~QFYP-E~v~--~G~~miqidvd 434 (476)
T KOG0918|consen 398 LDGKRLYVTNSLYSAWDRQFYP-ELVS--KGSHMIQIDVD 434 (476)
T ss_pred cCCcEEEEEchhhhhhHhhhCH-HHHh--cCceEEEEeee
Confidence 788 899999864 33332222 2222 23457777653
No 264
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.62 E-value=98 Score=27.43 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=50.7
Q ss_pred cEEEEEcCCCCeEEE-EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCcee-EEcCCC
Q 018144 187 GQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI-NLAPDG 264 (360)
Q Consensus 187 g~l~~~d~~tg~~~~-~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i-~~d~~G 264 (360)
..+..+|-+||++.. +...+...|.+++..+-. ++++.+....+..+|-........+++.+. -|++ .+|-.+
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea----~D~V~Si~v~~ 155 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEA----KDGVSSIDVAE 155 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhh----cCceeEEEecc
Confidence 458888988898755 444577899999987765 777777667777777543333444444332 3443 355556
Q ss_pred CEEEEEe
Q 018144 265 TFWIAII 271 (360)
Q Consensus 265 ~lwva~~ 271 (360)
+..|+-.
T Consensus 156 heIvaGS 162 (307)
T KOG0316|consen 156 HEIVAGS 162 (307)
T ss_pred cEEEeec
Confidence 6555543
No 265
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=63.88 E-value=1.3e+02 Score=28.05 Aligned_cols=29 Identities=3% Similarity=-0.034 Sum_probs=23.8
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
..-+.+.+||+.||....-..+|..+|+.
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 44567899999999988878889999874
No 266
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=63.67 E-value=1.1e+02 Score=27.15 Aligned_cols=17 Identities=0% Similarity=-0.396 Sum_probs=12.6
Q ss_pred CEEEEEeCCCCEEEEEE
Q 018144 219 DYVVVCESWKFRCRKYW 235 (360)
Q Consensus 219 ~~l~v~~t~~~~i~~~~ 235 (360)
..||-.++....|++-.
T Consensus 145 TtLy~ID~~~~~Lv~Q~ 161 (236)
T PF14339_consen 145 TTLYDIDTTLDALVTQN 161 (236)
T ss_pred eEEEEEecCCCeEEEec
Confidence 46888888877777663
No 267
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=62.69 E-value=1.6e+02 Score=28.77 Aligned_cols=68 Identities=12% Similarity=-0.014 Sum_probs=44.9
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
-++++++.++|....+ +...|.|..++..++++-.-..+....+-++++.+|+.+-++-+. +
T Consensus 454 pVysvafS~~g~ylAs-----------------Gs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd-~ 515 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLAS-----------------GSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD-G 515 (524)
T ss_pred ceEEEEecCCCcEEEe-----------------cCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecC-C
Confidence 3678999999985554 334677887877777664444444456778899888866666553 3
Q ss_pred EEEEEE
Q 018144 230 RCRKYW 235 (360)
Q Consensus 230 ~i~~~~ 235 (360)
.+.+++
T Consensus 516 ~vcvld 521 (524)
T KOG0273|consen 516 SVCVLD 521 (524)
T ss_pred CceEEE
Confidence 444444
No 268
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=62.49 E-value=1.5e+02 Score=28.64 Aligned_cols=130 Identities=16% Similarity=0.073 Sum_probs=62.5
Q ss_pred eEEEcCCCCEEEEec-CCeEEEEE--CC-----------eeeEEEec--CCeEEEEeCCCcEEEEc--CCC-eEEEeecc
Q 018144 83 DASMDKNGVIYTATR-DGWIKRLQ--DG-----------TWVNWKFI--DSHLIICDNANGLHKVS--EDG-VENFLSYV 143 (360)
Q Consensus 83 ~i~~d~~G~l~v~~~-~G~I~~~~--~g-----------~~~~~~~~--~g~L~v~~~~~gl~~~~--~~g-~~~l~~~~ 143 (360)
++++.+||...+... +..|..++ +. .+..+.+. ..+||.+..+.++-.++ +-. ++.+....
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 567778886655544 33443444 32 12222333 34588888777665555 223 44332111
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEE
Q 018144 144 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 223 (360)
Q Consensus 144 ~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v 223 (360)
..+-+|..-..+++.- -.. ...+-+|+++ |+.-++ .+..+-..+..+++-.+.. |+
T Consensus 287 -----d~v~~IdaL~reR~vt-VGg--------------rDrT~rlwKi-~eesql-ifrg~~~sidcv~~In~~H--fv 342 (479)
T KOG0299|consen 287 -----DGVLGIDALSRERCVT-VGG--------------RDRTVRLWKI-PEESQL-IFRGGEGSIDCVAFINDEH--FV 342 (479)
T ss_pred -----cceeeechhcccceEE-ecc--------------ccceeEEEec-ccccee-eeeCCCCCeeeEEEecccc--ee
Confidence 1223333333343221 110 1123467777 332222 1223334677888876653 45
Q ss_pred EeCCCCEEEEEEe
Q 018144 224 CESWKFRCRKYWL 236 (360)
Q Consensus 224 ~~t~~~~i~~~~~ 236 (360)
+.+.++.|.-+.+
T Consensus 343 sGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 343 SGSDNGSIALWSL 355 (479)
T ss_pred eccCCceEEEeee
Confidence 6666667766654
No 269
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=61.78 E-value=1.7e+02 Score=29.02 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=45.6
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEE-eCCCCEEEEEEecCCcCcceeeeccCCCCCCce-eEEcCCC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC-ESWKFRCRKYWLKGERKGKLETFAENLPGAPDN-INLAPDG 264 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~-~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~-i~~d~~G 264 (360)
..|+.++.++.+..+-...-.-.+.+.++++++..-|+ ...-.++..|++++. +..+...| |.| +.+.+.|
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~df~eg-pRN~~~fnp~g 323 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFDFPEG-PRNTAFFNPHG 323 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEeCCCC-CccceEECCCC
Confidence 35777776633333323333345789999998644333 444567888888763 22222233 444 6779999
Q ss_pred CEEE-EEec
Q 018144 265 TFWI-AIIK 272 (360)
Q Consensus 265 ~lwv-a~~~ 272 (360)
+|.+ |-++
T Consensus 324 ~ii~lAGFG 332 (566)
T KOG2315|consen 324 NIILLAGFG 332 (566)
T ss_pred CEEEEeecC
Confidence 8554 4444
No 270
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=60.94 E-value=1.9e+02 Score=29.19 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=37.8
Q ss_pred CCcCcceEEEecCCCEEEEE--eCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCC-CEEEEEec
Q 018144 205 GFYFANGVALSRDEDYVVVC--ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 272 (360)
Q Consensus 205 ~l~~pngia~~~dg~~l~v~--~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~ 272 (360)
.....+.+.++.+|+++-+. +.++.+|+.+.++..+. ...|. ...|.|-...+-+.- .++|++..
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s--Q~PF~-kskG~vq~v~FHPs~p~lfVaTq~ 587 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS--QSPFR-KSKGLVQRVKFHPSKPYLFVATQR 587 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc--cCchh-hcCCceeEEEecCCCceEEEEecc
Confidence 34455778899999865443 23446788887754321 12332 234556666665433 68888765
No 271
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=60.56 E-value=1.1e+02 Score=31.27 Aligned_cols=20 Identities=20% Similarity=0.136 Sum_probs=15.6
Q ss_pred cccccEEEcCCC-cEEEEeCC
Q 018144 149 RFANDVVEASDG-SLYFTVSS 168 (360)
Q Consensus 149 ~~~n~l~~d~dG-~l~vtd~~ 168 (360)
..+..+..+++| ++|..|+.
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred ceEEEEEecccccEEeecCCC
Confidence 457788889999 79997754
No 272
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=60.27 E-value=1.5e+02 Score=27.70 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=72.9
Q ss_pred CCccEEEEEcCCCCeEEEEeCC-CcCcceEEEec--CCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEE
Q 018144 184 KPHGQLLKYDPSSNITTLVADG-FYFANGVALSR--DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINL 260 (360)
Q Consensus 184 ~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~--dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~ 260 (360)
-.+|.+-.||+.|++.-....+ -...||+.+.. ....++.+.+ .+.|..||+.-........+. +.++.| -+++
T Consensus 47 lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss-DG~Vr~wD~Rs~~e~a~~~~~-~~~~~~-f~~l 123 (376)
T KOG1188|consen 47 LSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSS-DGTVRLWDIRSQAESARISWT-QQSGTP-FICL 123 (376)
T ss_pred ecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEecc-CCeEEEEEeecchhhhheecc-CCCCCc-ceEe
Confidence 3467888999987654322222 23568998866 3445666655 567888887432111111222 333333 3455
Q ss_pred cC--CCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-C-CcEEEEEeCCCCCcccceee
Q 018144 261 AP--DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-D-GTIIRNLVDPTGQLMSFVTS 336 (360)
Q Consensus 261 d~--~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-g~~~~~~~~~~g~~~~~~t~ 336 (360)
|. ++++....... ......|+-+|- . .+.+..|.+.. ..-+|+
T Consensus 124 d~nck~~ii~~GtE~------------------------------~~s~A~v~lwDvR~~qq~l~~~~eSH---~DDVT~ 170 (376)
T KOG1188|consen 124 DLNCKKNIIACGTEL------------------------------TRSDASVVLWDVRSEQQLLRQLNESH---NDDVTQ 170 (376)
T ss_pred eccCcCCeEEecccc------------------------------ccCceEEEEEEeccccchhhhhhhhc---cCccee
Confidence 55 56665543220 111245556663 2 23355554322 345777
Q ss_pred EEEE--CCEEEEEeCCCCeEEEEeC
Q 018144 337 GLQV--DNHLYVISLTSNFIGKVQL 359 (360)
Q Consensus 337 ~~~~--~g~Lylgs~~~~~i~~~~l 359 (360)
+.++ +-+|.+..-....+-.+++
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeec
Confidence 7776 3455555555566666553
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=59.24 E-value=1.9e+02 Score=28.74 Aligned_cols=78 Identities=8% Similarity=0.089 Sum_probs=44.9
Q ss_pred CeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcC
Q 018144 117 SHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 194 (360)
Q Consensus 117 g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 194 (360)
+.||-++.+..+..++ ..+ ....... +. ..+..+++.+||.+-.+ ..+.|-.||-
T Consensus 115 ~ciyS~~ad~~v~~~~~~~~~~~~~~~~--~~--~~~~sl~is~D~~~l~~-------------------as~~ik~~~~ 171 (541)
T KOG4547|consen 115 GCIYSVGADLKVVYILEKEKVIIRIWKE--QK--PLVSSLCISPDGKILLT-------------------ASRQIKVLDI 171 (541)
T ss_pred CceEecCCceeEEEEecccceeeeeecc--CC--CccceEEEcCCCCEEEe-------------------ccceEEEEEc
Confidence 3456555555555565 344 2221111 11 24668899999987774 2346888888
Q ss_pred CCCeEEEEeCCCcCc-ceEEEecC
Q 018144 195 SSNITTLVADGFYFA-NGVALSRD 217 (360)
Q Consensus 195 ~tg~~~~~~~~l~~p-ngia~~~d 217 (360)
+++++-...++...| +.+++..+
T Consensus 172 ~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 172 ETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred cCceEEEEecCCCcceEEEEEEEe
Confidence 888876666665544 45554443
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=59.20 E-value=1.6e+02 Score=28.02 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=25.8
Q ss_pred CeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 197 NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 197 g~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
+..+.....+..-..+++++|+++++.++.. ..|...+.
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRD-EkIRvs~y 180 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRD-EKIRVSRY 180 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCC-ceEEEEec
Confidence 3333344445667789999999988888864 45555444
No 275
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=58.73 E-value=2.2e+02 Score=29.24 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=33.7
Q ss_pred cceEEEecCC-----CEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 018144 209 ANGVALSRDE-----DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 270 (360)
Q Consensus 209 pngia~~~dg-----~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~ 270 (360)
..+|+++|.. +.+=|.+++ ..+.-|.++|...+..+. +..-|-.|..=.+|. +.+|.
T Consensus 179 iwsi~~~p~sg~G~~di~aV~DW~-qTLSFy~LsG~~Igk~r~----L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 179 IWSICWNPSSGEGRNDILAVADWG-QTLSFYQLSGKQIGKDRA----LNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred ceEEEecCCCCCCccceEEEEecc-ceeEEEEecceeeccccc----CCCCchhheeccCCcEEEEcc
Confidence 3478887642 367777764 578888888865553322 222355666666674 44443
No 276
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.35 E-value=1.7e+02 Score=27.85 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=38.3
Q ss_pred CCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 205 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 205 ~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
.+.....++++.||+++-+. +..+.|..|+.. +......+.....+...++.+.++-+.-..
T Consensus 280 ~~~siSsl~VS~dGkf~AlG-T~dGsVai~~~~--~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALG-TMDGSVAIYDAK--SLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred ccCcceeEEEcCCCcEEEEe-ccCCcEEEEEec--eeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 34456788999999855544 456778888753 233333444334456677777776654444
No 277
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=57.16 E-value=1.6e+02 Score=27.06 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=45.4
Q ss_pred cEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEE
Q 018144 153 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 232 (360)
Q Consensus 153 ~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~ 232 (360)
+.++.++-++|+. .-.|.|.+||.+++....+........+|...+-.+ .+++.+...+|.
T Consensus 59 ~c~F~d~~~~~~G------------------~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik 119 (323)
T KOG1036|consen 59 DCAFADESTIVTG------------------GLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIK 119 (323)
T ss_pred eeeccCCceEEEe------------------ccCceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEE
Confidence 3455556678884 345789999999888777666555566777775444 556666677787
Q ss_pred EEEec
Q 018144 233 KYWLK 237 (360)
Q Consensus 233 ~~~~~ 237 (360)
.+|+.
T Consensus 120 ~wD~R 124 (323)
T KOG1036|consen 120 FWDPR 124 (323)
T ss_pred EEecc
Confidence 77764
No 278
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=56.32 E-value=1.8e+02 Score=27.42 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=32.8
Q ss_pred cCCccEEEEEcCCCCeEEEEeCCCc-CcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 183 GKPHGQLLKYDPSSNITTLVADGFY-FANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~~l~-~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
+...|.++.+.-.++...++..+.. ..+.=.+.|||+.+..... .+.|..++++.
T Consensus 166 G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-dgti~~Wn~kt 221 (399)
T KOG0296|consen 166 GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-DGTIIVWNPKT 221 (399)
T ss_pred ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-CceEEEEecCC
Confidence 4556777777655433333333322 2234457899997776665 56788888753
No 279
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=56.19 E-value=1.6e+02 Score=26.84 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=20.3
Q ss_pred CCcCcceEEEecCCCEEEEEeCCCCEEEEEE
Q 018144 205 GFYFANGVALSRDEDYVVVCESWKFRCRKYW 235 (360)
Q Consensus 205 ~l~~pngia~~~dg~~l~v~~t~~~~i~~~~ 235 (360)
++..||-++.+.|+.++-|...+ ..++-+
T Consensus 169 ~~~~~n~ia~s~dng~vaVg~rG--s~f~T~ 197 (339)
T COG4447 169 GLAVPNEIARSADNGYVAVGARG--SFFSTW 197 (339)
T ss_pred chhhhhhhhhhccCCeEEEecCc--ceEecC
Confidence 45688999999999877666654 355433
No 280
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=56.15 E-value=2.3e+02 Score=28.70 Aligned_cols=51 Identities=22% Similarity=0.117 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCeEEEEeCCCc--CcceEEEecCCCEEEEEeCC------CCEEEEEEecCC
Q 018144 187 GQLLKYDPSSNITTLVADGFY--FANGVALSRDEDYVVVCESW------KFRCRKYWLKGE 239 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~--~pngia~~~dg~~l~v~~t~------~~~i~~~~~~g~ 239 (360)
..+-+|||.+.+++....-.. ...|++.- +| .+|++.-. -..+.+||+..+
T Consensus 396 ~svE~YDp~~~~W~~va~m~~~r~~~gv~~~-~g-~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 396 NSVECYDPVTNKWTPVAPMLTRRSGHGVAVL-GG-KLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred ccEEEecCCCCcccccCCCCcceeeeEEEEE-CC-EEEEEcCcCCCccccceEEEEcCCCC
Confidence 468899999888876543222 22233332 44 58888541 145778887543
No 281
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=55.24 E-value=40 Score=20.92 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=17.6
Q ss_pred eeEEEecCCeEEEEeCCCcEEEEc
Q 018144 109 WVNWKFIDSHLIICDNANGLHKVS 132 (360)
Q Consensus 109 ~~~~~~~~g~L~v~~~~~gl~~~~ 132 (360)
...+...++.+||++...|+..+|
T Consensus 4 a~~v~v~g~yaYva~~~~Gl~IvD 27 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNGLVIVD 27 (42)
T ss_pred EEEEEEECCEEEEEeCCCCEEEEE
Confidence 344455677888888888888888
No 282
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=53.04 E-value=1.9e+02 Score=26.62 Aligned_cols=52 Identities=12% Similarity=-0.079 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCCeEEEEeCC--CcCcceEEEecCCCEEEEEeCCC----CEEEEEEecC
Q 018144 186 HGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVCESWK----FRCRKYWLKG 238 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~--l~~pngia~~~dg~~l~v~~t~~----~~i~~~~~~g 238 (360)
...+++||+.+.+.+.+..- .......+..-++ .+|+..-.. ..+.+||++.
T Consensus 138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 138 SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECC-EEEEEcCCCCccccceEEEecCC
Confidence 35799999998888765421 1111223333344 488875322 2357888754
No 283
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=52.87 E-value=2.1e+02 Score=27.10 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=13.7
Q ss_pred cEEEEEcCCCCeEEEEe
Q 018144 187 GQLLKYDPSSNITTLVA 203 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~ 203 (360)
..|.+||+.+++++.+.
T Consensus 189 ~~v~~YD~~t~~W~~~~ 205 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG 205 (376)
T ss_pred ceEEEEECCCCeeeECC
Confidence 46999999988887653
No 284
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=52.57 E-value=99 Score=28.92 Aligned_cols=28 Identities=14% Similarity=-0.011 Sum_probs=16.7
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
....|-+.++. + ++|+.++...|..+++
T Consensus 320 rAaVNvVdfd~--k-yIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 320 RAAVNVVDFDD--K-YIVSASGDRTIKVWST 347 (499)
T ss_pred hhheeeecccc--c-eEEEecCCceEEEEec
Confidence 34556676653 3 6667666656666654
No 285
>PLN02153 epithiospecifier protein
Probab=52.22 E-value=2e+02 Score=26.70 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.1
Q ss_pred cEEEEEcCCCCeEEEEe
Q 018144 187 GQLLKYDPSSNITTLVA 203 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~ 203 (360)
..+++||+.+.+.+.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLT 117 (341)
T ss_pred CcEEEEECCCCEEEEec
Confidence 46899999988877653
No 286
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=51.51 E-value=2e+02 Score=26.47 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=66.9
Q ss_pred EEEcC-CCCEEEEecCCeEEEEE-CC-----eee------EEEe-cCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCcc
Q 018144 84 ASMDK-NGVIYTATRDGWIKRLQ-DG-----TWV------NWKF-IDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSK 147 (360)
Q Consensus 84 i~~d~-~G~l~v~~~~G~I~~~~-~g-----~~~------~~~~-~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~ 147 (360)
+-+++ .+.|.+++++|.+..++ .. ++. ...+ .+-.+|+++.++-+.++| .++ ...+-+...+
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~-- 96 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEG-- 96 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCc--
Confidence 44443 67889999999887776 22 111 1111 245688888777788888 555 3333222111
Q ss_pred ccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceE-EEecCCCEEEEEeC
Q 018144 148 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV-ALSRDEDYVVVCES 226 (360)
Q Consensus 148 ~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngi-a~~~dg~~l~v~~t 226 (360)
+..|.-...-...|| +...+.|-.+|+.. + .....+..++-| +.+-.|+.|+|.-.
T Consensus 97 ---i~ci~~~~~~~~vIs-----------------gsWD~~ik~wD~R~-~--~~~~~~d~~kkVy~~~v~g~~LvVg~~ 153 (323)
T KOG1036|consen 97 ---IRCIEYSYEVGCVIS-----------------GSWDKTIKFWDPRN-K--VVVGTFDQGKKVYCMDVSGNRLVVGTS 153 (323)
T ss_pred ---eEEEEeeccCCeEEE-----------------cccCccEEEEeccc-c--ccccccccCceEEEEeccCCEEEEeec
Confidence 223332222233343 44456777788753 1 111222233322 34445566766443
Q ss_pred CCCEEEEEEec
Q 018144 227 WKFRCRKYWLK 237 (360)
Q Consensus 227 ~~~~i~~~~~~ 237 (360)
..++..||+.
T Consensus 154 -~r~v~iyDLR 163 (323)
T KOG1036|consen 154 -DRKVLIYDLR 163 (323)
T ss_pred -CceEEEEEcc
Confidence 4678888874
No 287
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=51.44 E-value=2.2e+02 Score=27.08 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=41.3
Q ss_pred cEEEEEcCCCCeEE--EEeCCCcC---cceEEEecCCCEEEEEeCCC---CEEEEEEecCC--cCcceeeeccCCCCCCc
Q 018144 187 GQLLKYDPSSNITT--LVADGFYF---ANGVALSRDEDYVVVCESWK---FRCRKYWLKGE--RKGKLETFAENLPGAPD 256 (360)
Q Consensus 187 g~l~~~d~~tg~~~--~~~~~l~~---pngia~~~dg~~l~v~~t~~---~~i~~~~~~g~--~~~~~~~~~~~~~g~pd 256 (360)
..|+++...+...+ .+...... --++..++|++++++..... ..++.++.+.. .......+.....+.
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~-- 279 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV-- 279 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS---
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce--
Confidence 36777776655332 33333222 33788899999888765433 45777777542 122333333222221
Q ss_pred eeEEc-CCCCEEEEEec
Q 018144 257 NINLA-PDGTFWIAIIK 272 (360)
Q Consensus 257 ~i~~d-~~G~lwva~~~ 272 (360)
...++ ..+.+|+-+..
T Consensus 280 ~~~v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTND 296 (414)
T ss_dssp EEEEEEETTEEEEEE-T
T ss_pred EEEEEccCCEEEEeeCC
Confidence 11222 24568876654
No 288
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=51.29 E-value=2.1e+02 Score=26.75 Aligned_cols=102 Identities=15% Similarity=0.226 Sum_probs=59.3
Q ss_pred cEEEEc--CCC-eEEEeeccCCc-cccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEE
Q 018144 127 GLHKVS--EDG-VENFLSYVNGS-KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 202 (360)
Q Consensus 127 gl~~~~--~~g-~~~l~~~~~~~-~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~ 202 (360)
.++.++ +.| +..+.-...|. .-.++..+..-.+|++|++.-+-. ..++ =.||.+..-|.+.+++
T Consensus 157 HLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~-----------~~SP-LKiY~w~tPts~PevI 224 (442)
T PF15416_consen 157 HLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGG-----------KASP-LKIYYWETPTSAPEVI 224 (442)
T ss_pred eeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCC-----------CCCc-eEEEEecCCCCCceEE
Confidence 455555 445 44432222221 124677777778999999864310 0112 2688887666666655
Q ss_pred eCC-----------CcCcceEEEecCCC-EEEEEeCCCCEEEEEEecCCc
Q 018144 203 ADG-----------FYFANGVALSRDED-YVVVCESWKFRCRKYWLKGER 240 (360)
Q Consensus 203 ~~~-----------l~~pngia~~~dg~-~l~v~~t~~~~i~~~~~~g~~ 240 (360)
..- ......+.++.+|+ ++++.+.....+.|+.+++.+
T Consensus 225 a~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vsn~k 274 (442)
T PF15416_consen 225 ADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVSNYK 274 (442)
T ss_pred EeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEccCcc
Confidence 421 01123567777665 677777777889999987653
No 289
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=50.79 E-value=2.4e+02 Score=27.18 Aligned_cols=72 Identities=13% Similarity=-0.022 Sum_probs=46.9
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCe--EEEEeCCCcCcceEEEecCCCEEEEEeCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~--~~~~~~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
.+|.+++.+-+...++. +...++|..+|+.+-. +..+..--.....+.++|....++.+...
T Consensus 274 ~vn~~~fnp~~~~ilAT----------------~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILAT----------------GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred ceeEEEeCCCCCceEEe----------------ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence 46777887755434432 3346788888874221 12121122345678999998889888888
Q ss_pred CCEEEEEEec
Q 018144 228 KFRCRKYWLK 237 (360)
Q Consensus 228 ~~~i~~~~~~ 237 (360)
.+++..+|++
T Consensus 338 D~rl~vWDls 347 (422)
T KOG0264|consen 338 DRRLNVWDLS 347 (422)
T ss_pred CCcEEEEecc
Confidence 8899999985
No 290
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=50.59 E-value=2.2e+02 Score=26.66 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=35.5
Q ss_pred EEEcCCC-cEEEEeCCCCCCCccceecccccCCccEEEEEcCC-CCeEEEEeCCCcCc-ceEEEecCCCEEEEE
Q 018144 154 VVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVADGFYFA-NGVALSRDEDYVVVC 224 (360)
Q Consensus 154 l~~d~dG-~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tg~~~~~~~~l~~p-ngia~~~dg~~l~v~ 224 (360)
+.+|+++ .|||+-... ....-.||+++.+ +++.+.+... ... ..+.++||++++...
T Consensus 286 ~~~d~~~~~iyf~a~~~-------------~p~~r~lY~v~~~~~~~~~~LT~~-~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 286 LGWDEDNNRIYFTANGD-------------NPGERHLYRVSLDSGGEPKCLTCE-DGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEECTSSEEEEEESSG-------------GTTSBEEEEEETTETTEEEESSTT-SSTTEEEEE-TTSSEEEEE
T ss_pred ceEcCCCCEEEEEecCC-------------CCCceEEEEEEeCCCCCeEeccCC-CCCceEEEECCCCCEEEEE
Confidence 4567665 688864320 1123469999988 7888776543 333 489999999855433
No 291
>PHA02790 Kelch-like protein; Provisional
Probab=50.26 E-value=2.6e+02 Score=27.53 Aligned_cols=50 Identities=4% Similarity=-0.059 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcc-e-EEEecCCCEEEEEeCC---CCEEEEEEecC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFAN-G-VALSRDEDYVVVCESW---KFRCRKYWLKG 238 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pn-g-ia~~~dg~~l~v~~t~---~~~i~~~~~~g 238 (360)
..+.+||+.++++.... .+..+. + .+..-+| .+|+.... ...+.+|+++.
T Consensus 331 ~sve~ydp~~n~W~~~~-~l~~~r~~~~~~~~~g-~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 331 TSVERWFHGDAAWVNMP-SLLKPRCNPAVASINN-VIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CceEEEECCCCeEEECC-CCCCCCcccEEEEECC-EEEEecCcCCCCccEEEEeCCC
Confidence 35789999878776543 333222 1 1222345 48887432 13466787653
No 292
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=49.70 E-value=2.6e+02 Score=27.35 Aligned_cols=135 Identities=15% Similarity=0.057 Sum_probs=59.4
Q ss_pred CCcceEEEcCCCCEEEEecCCeEEEEE--CCeeeEEEecCCeEEEEeCCCcEEEEcCCC-eEEEee--ccCCcccc---c
Q 018144 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSHLIICDNANGLHKVSEDG-VENFLS--YVNGSKLR---F 150 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~~~G~I~~~~--~g~~~~~~~~~g~L~v~~~~~gl~~~~~~g-~~~l~~--~~~~~~~~---~ 150 (360)
..|..+...++|+..+.+.+|.-..+. .-+-.......+-+|++ .+....++.+. +..+.. ......+. .
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~ 110 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSS--RNRYAVLESSSTIKIYKNFKNEVVKSIKLPFS 110 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-T--SSEEEEE-TTS-EEEEETTEE-TT-----SS-
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEec--CccEEEEECCCeEEEEEcCccccceEEcCCcc
Confidence 459999999999887777777655554 22222222222235554 22222233333 333211 11101111 1
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCE
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 230 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~ 230 (360)
+.+|.- |.+.... ..+.|..||-+++++..-.+ ......+.++++|+.+-+.....--
T Consensus 111 ~~~If~---G~LL~~~------------------~~~~i~~yDw~~~~~i~~i~-v~~vk~V~Ws~~g~~val~t~~~i~ 168 (443)
T PF04053_consen 111 VEKIFG---GNLLGVK------------------SSDFICFYDWETGKLIRRID-VSAVKYVIWSDDGELVALVTKDSIY 168 (443)
T ss_dssp EEEEE----SSSEEEE------------------ETTEEEEE-TTT--EEEEES-S-E-EEEEE-TTSSEEEEE-S-SEE
T ss_pred cceEEc---CcEEEEE------------------CCCCEEEEEhhHcceeeEEe-cCCCcEEEEECCCCEEEEEeCCeEE
Confidence 233322 6654432 23468999988776644333 1223789999999866666544434
Q ss_pred EEEEEec
Q 018144 231 CRKYWLK 237 (360)
Q Consensus 231 i~~~~~~ 237 (360)
|.+++.+
T Consensus 169 il~~~~~ 175 (443)
T PF04053_consen 169 ILKYNLE 175 (443)
T ss_dssp EEEE-HH
T ss_pred EEEecch
Confidence 5555543
No 293
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=49.37 E-value=2e+02 Score=25.91 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=20.9
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
...|+..+..-..||+++.. -.|++|..+
T Consensus 206 QTEG~VaDdEtG~LYIaeEd-vaiWK~~Ae 234 (364)
T COG4247 206 QTEGMVADDETGFLYIAEED-VAIWKYEAE 234 (364)
T ss_pred cccceeeccccceEEEeecc-ceeeecccC
Confidence 34577766555579999974 579999865
No 294
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=49.08 E-value=2.9e+02 Score=27.61 Aligned_cols=135 Identities=10% Similarity=0.141 Sum_probs=70.7
Q ss_pred CCcceE-EEcCCCCEEEEe--cCCeEEEEE--CCeee-EEEe------------------cCCeEEEEeCCCcEEEEcC-
Q 018144 79 NHPEDA-SMDKNGVIYTAT--RDGWIKRLQ--DGTWV-NWKF------------------IDSHLIICDNANGLHKVSE- 133 (360)
Q Consensus 79 ~~Pe~i-~~d~~G~l~v~~--~~G~I~~~~--~g~~~-~~~~------------------~~g~L~v~~~~~gl~~~~~- 133 (360)
..|+-+ ..+.+..|...+ ....+|++| .|++. .|.. ..+ -.|+-..++++++|+
T Consensus 467 idp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eq-tlvGlS~~svFrIDPR 545 (776)
T COG5167 467 IDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQ-TLVGLSDYSVFRIDPR 545 (776)
T ss_pred CChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccc-eEEeecccceEEeccc
Confidence 356655 334455555544 456789988 56532 3321 123 356666788999992
Q ss_pred -CC--eEEEe-eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCc-C
Q 018144 134 -DG--VENFL-SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-F 208 (360)
Q Consensus 134 -~g--~~~l~-~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~-~ 208 (360)
.| +...- ....+. +..+.......|.|-++ ...|-|-.||.-..+.+....++. .
T Consensus 546 ~~gNKi~v~esKdY~tK--n~Fss~~tTesGyIa~a------------------s~kGDirLyDRig~rAKtalP~lG~a 605 (776)
T COG5167 546 ARGNKIKVVESKDYKTK--NKFSSGMTTESGYIAAA------------------SRKGDIRLYDRIGKRAKTALPGLGDA 605 (776)
T ss_pred ccCCceeeeeehhcccc--ccccccccccCceEEEe------------------cCCCceeeehhhcchhhhcCcccccc
Confidence 44 22211 111111 12233345567766663 234667777764333333444443 3
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
.-+|.++.+|++++ +.. ...|+-.+.
T Consensus 606 Ik~idvta~Gk~il-aTC-k~yllL~d~ 631 (776)
T COG5167 606 IKHIDVTANGKHIL-ATC-KNYLLLTDV 631 (776)
T ss_pred eeeeEeecCCcEEE-Eee-cceEEEEec
Confidence 46788899998554 333 234555554
No 295
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=48.25 E-value=2e+02 Score=25.65 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=38.6
Q ss_pred CCcEEEEeCCCCCCCccceecccccCCccEE-EEEcCCCCeEEEEeCC----CcCcceEEEecCCCEEEEEeCCCCEEEE
Q 018144 159 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL-LKYDPSSNITTLVADG----FYFANGVALSRDEDYVVVCESWKFRCRK 233 (360)
Q Consensus 159 dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l-~~~d~~tg~~~~~~~~----l~~pngia~~~dg~~l~v~~t~~~~i~~ 233 (360)
=|.||++++... ...+| +.||..+++.+...-. .....-+..+|..+.||+-+.+ .+..
T Consensus 180 CGvLY~~~s~~~--------------~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G--~~v~ 243 (250)
T PF02191_consen 180 CGVLYATDSYDT--------------RDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNG--YQVT 243 (250)
T ss_pred eeEEEEEEECCC--------------CCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEECC--eEEE
Confidence 488999887521 12333 5688877765543222 2234467788988889999864 4666
Q ss_pred EEe
Q 018144 234 YWL 236 (360)
Q Consensus 234 ~~~ 236 (360)
|++
T Consensus 244 Y~v 246 (250)
T PF02191_consen 244 YDV 246 (250)
T ss_pred EEE
Confidence 664
No 296
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=47.80 E-value=2.6e+02 Score=26.81 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=38.4
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeC-CCcCcceEEEecCCCEEEEEeCCCC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWKF 229 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~-~l~~pngia~~~dg~~l~v~~t~~~ 229 (360)
+..+....+|.--|+ +...|-|-.++++-..++.... .-....+++++|... -|++-+..+
T Consensus 141 Vr~m~ws~~g~wmiS-----------------gD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg 202 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMIS-----------------GDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDG 202 (464)
T ss_pred ceeEEEccCCCEEEE-----------------cCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCc-eeEEecCCC
Confidence 567778888876664 2234445555664222221111 113457899998654 555666666
Q ss_pred EEEEEEe
Q 018144 230 RCRKYWL 236 (360)
Q Consensus 230 ~i~~~~~ 236 (360)
+|...+.
T Consensus 203 ~ikiWdf 209 (464)
T KOG0284|consen 203 TIKIWDF 209 (464)
T ss_pred eEEEEec
Confidence 6766664
No 297
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=47.25 E-value=2.5e+02 Score=26.41 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=32.5
Q ss_pred EEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 188 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
.+-.++.+|+++..... ..-.|||.-.-...++|+.++.+.|..++++-
T Consensus 341 TikvW~~st~efvRtl~--gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred eEEEEeccceeeehhhh--cccccceehhccCeEEEecCCCceEEEEeccc
Confidence 45566666666544332 24567876554456999999888888888753
No 298
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.04 E-value=1e+02 Score=30.69 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=39.2
Q ss_pred cCCccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 183 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
+..+|.|..||..++.. ........|+-++++|+|..+.|++ ..+.|..||..
T Consensus 277 GC~DgSiiLyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s-~qGelQ~FD~A 329 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGS-EQGELQCFDMA 329 (545)
T ss_pred EecCCeEEEEEcCCCee-eeeeecccceEEEEcCCCcEEEEEc-CCceEEEEEee
Confidence 45578899999875543 3444456799999999998666665 46789999974
No 299
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=46.28 E-value=2.5e+02 Score=26.13 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=15.4
Q ss_pred CCCceeEEcCCCCEEEEEec
Q 018144 253 GAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 253 g~pd~i~~d~~G~lwva~~~ 272 (360)
+-|--+.+.++|.+.....+
T Consensus 332 ~~p~RL~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 332 SEPVRLELSPSGDSLAVSFG 351 (420)
T ss_pred CCceEEEeCCCCcEEEeecC
Confidence 35677888999988877766
No 300
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=45.77 E-value=2.2e+02 Score=25.32 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=51.9
Q ss_pred EEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe---CCCc-CcceEEEecCCCEEEEEeC--CC
Q 018144 155 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFY-FANGVALSRDEDYVVVCES--WK 228 (360)
Q Consensus 155 ~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~---~~l~-~pngia~~~dg~~l~v~~t--~~ 228 (360)
.+|++|.+|+.+... ...++.+ +..+++..... ..+. ....+.+++||..+-+... .+
T Consensus 72 S~d~~g~~W~v~~~~---------------~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~ 135 (253)
T PF10647_consen 72 SWDPDGWVWTVDDGS---------------GGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGG 135 (253)
T ss_pred cccCCCCEEEEEcCC---------------CceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCC
Confidence 688999999986531 1122333 32223332221 1222 4567899999986665552 24
Q ss_pred CEEEEEEecCCcCc------ceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 229 FRCRKYWLKGERKG------KLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 229 ~~i~~~~~~g~~~~------~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+|+.--+.....+ ...........-...+..-.++.|.|....
T Consensus 136 ~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 136 GRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred CeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence 56665443211112 111111111123456667778888887655
No 301
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=45.22 E-value=2.6e+02 Score=29.96 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=44.9
Q ss_pred CcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEecCc
Q 018144 208 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLD 274 (360)
Q Consensus 208 ~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~ 274 (360)
....++++||+. ++++-+..+.|..|+... ....+++. ...+.+-|+.+|+-|.+..+...-|
T Consensus 131 DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t--F~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 131 DVLDVNWSPDDS-LLVSVSLDNSVIIWNAKT--FELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred ccceeccCCCcc-EEEEecccceEEEEcccc--ceeeeeee-cccccccceEECCccCeeeeecCCc
Confidence 345788999886 777777788898887532 33334443 3556789999999998888766543
No 302
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.59 E-value=4.3e+02 Score=28.35 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=11.3
Q ss_pred CceeEEcCCCCEEEEEec
Q 018144 255 PDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 255 pd~i~~d~~G~lwva~~~ 272 (360)
-+.|.....|++.+-...
T Consensus 454 ~~~IF~ag~g~lll~~~~ 471 (1202)
T KOG0292|consen 454 TDDIFYAGTGNLLLRSPD 471 (1202)
T ss_pred ccceeeccCccEEEEcCC
Confidence 355666777777765543
No 303
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=44.54 E-value=34 Score=33.13 Aligned_cols=20 Identities=20% Similarity=0.664 Sum_probs=17.6
Q ss_pred CCCceeEEcCCCCEEEEEec
Q 018144 253 GAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 253 g~pd~i~~d~~G~lwva~~~ 272 (360)
.+|.++.+|.||..|+....
T Consensus 467 ylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 467 YLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred ecCCcceecCCCcEEeeccc
Confidence 37999999999999998765
No 304
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.20 E-value=3.4e+02 Score=27.14 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=27.1
Q ss_pred eEEEEECC--CCc-EEEEEeCC--CCCcccceeeEEEECCEEEEEeCCCC
Q 018144 308 AHLIHVAE--DGT-IIRNLVDP--TGQLMSFVTSGLQVDNHLYVISLTSN 352 (360)
Q Consensus 308 ~~v~~~~~--~g~-~~~~~~~~--~g~~~~~~t~~~~~~g~Lylgs~~~~ 352 (360)
.+|+++|| +|+ .+...+.. .+. .++.+.+.-.+|++-+||..++
T Consensus 404 n~vfriDpRv~~~~kl~~~q~kqy~~k-~nFsc~aTT~sG~IvvgS~~Gd 452 (644)
T KOG2395|consen 404 NSVFRIDPRVQGKNKLAVVQSKQYSTK-NNFSCFATTESGYIVVGSLKGD 452 (644)
T ss_pred CceEEecccccCcceeeeeeccccccc-cccceeeecCCceEEEeecCCc
Confidence 58999998 455 34333322 121 3444445555699999999875
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=43.99 E-value=63 Score=18.62 Aligned_cols=29 Identities=17% Similarity=0.059 Sum_probs=19.7
Q ss_pred CcCcceEEEecCCCEEEEEeCCCCEEEEEE
Q 018144 206 FYFANGVALSRDEDYVVVCESWKFRCRKYW 235 (360)
Q Consensus 206 l~~pngia~~~dg~~l~v~~t~~~~i~~~~ 235 (360)
....+.++++++++.+..+. ..+.|..++
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 45678899999988555555 455666553
No 306
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=43.93 E-value=3e+02 Score=27.61 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=63.2
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe-CC-CcCcceEEEec-CCCEEEEEe
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DG-FYFANGVALSR-DEDYVVVCE 225 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~-~~-l~~pngia~~~-dg~~l~v~~ 225 (360)
..+|.+....||.+.++ +...-++..+|+-..+..... ++ ......+.|-| .++.++++.
T Consensus 51 GCVN~LeWn~dG~lL~S-----------------GSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLAS-----------------GSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred ceecceeecCCCCEEee-----------------cCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 47899999999998886 334567888888644433222 22 22333455545 345688888
Q ss_pred CCCCEEEEEEecCCcCcce--------eeeccCCCCCCceeEEcCCC--CEEEEEecCc
Q 018144 226 SWKFRCRKYWLKGERKGKL--------ETFAENLPGAPDNINLAPDG--TFWIAIIKLD 274 (360)
Q Consensus 226 t~~~~i~~~~~~g~~~~~~--------~~~~~~~~g~pd~i~~d~~G--~lwva~~~~~ 274 (360)
.+...|..||++..+.+.. ..+... ....-.|+..++| .+|.+...+.
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~ch-t~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCH-TDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhh-hhhhhheecCCCCCceEEEecCCcc
Confidence 8888889999864221111 111100 0123456666666 5888776543
No 307
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=43.86 E-value=2.8e+02 Score=26.00 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCeEEEEeCC
Q 018144 341 DNHLYVISLTSNFIGKVQLS 360 (360)
Q Consensus 341 ~g~Lylgs~~~~~i~~~~l~ 360 (360)
+|++|+|.....-|.|++++
T Consensus 252 nGyiFFgdnaat~ilR~~vs 271 (442)
T PF15416_consen 252 NGYIFFGDNAATNILRFTVS 271 (442)
T ss_pred ceEEEecCCccceEEEEEcc
Confidence 38899999999999998763
No 308
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=43.82 E-value=3e+02 Score=26.36 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=26.6
Q ss_pred CCcCcceEE---EecCCCEEEEEeCCCCEEEEEEecCC
Q 018144 205 GFYFANGVA---LSRDEDYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 205 ~l~~pngia---~~~dg~~l~v~~t~~~~i~~~~~~g~ 239 (360)
.+...||+. +|+|.+.+|++.-+.+.|.-|.+..+
T Consensus 259 elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 259 ELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred EeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 345567775 58899999999998888877777543
No 309
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=43.30 E-value=3.2e+02 Score=26.58 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=12.5
Q ss_pred cccEEEcCCCcEEEE
Q 018144 151 ANDVVEASDGSLYFT 165 (360)
Q Consensus 151 ~n~l~~d~dG~l~vt 165 (360)
.+.|..+++|.+|+-
T Consensus 277 ~~~i~~~enGDvYvf 291 (435)
T PF14298_consen 277 YNGIWKDENGDVYVF 291 (435)
T ss_pred eeeeeEeCCCCEEEE
Confidence 468899999999964
No 310
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=43.15 E-value=3.5e+02 Score=27.00 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=33.1
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcC-cceeeeccCCCCCCceeEEcCCCCEEEE
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFAENLPGAPDNINLAPDGTFWIA 269 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~~~~g~pd~i~~d~~G~lwva 269 (360)
..+|..++++||++|-.... .+.|..|+.+..++ +..+.+. |.--.++..+||.+.+.
T Consensus 291 g~in~f~FS~DG~~LA~VSq-DGfLRvF~fdt~eLlg~mkSYF----GGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQ-DGFLRIFDFDTQELLGVMKSYF----GGLLCVCWSPDGKYIVT 349 (636)
T ss_pred ccccceeEcCCCceEEEEec-CceEEEeeccHHHHHHHHHhhc----cceEEEEEcCCccEEEe
Confidence 36899999999996654443 45677777654321 1111111 11224556788865554
No 311
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=41.57 E-value=1e+02 Score=30.61 Aligned_cols=57 Identities=28% Similarity=0.233 Sum_probs=31.1
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEEecCCCEEEE
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVV 223 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v 223 (360)
.+|.+++.+||....+.+. +|-|-.+|-++.++.-+... +..--.++++|||+++..
T Consensus 292 ~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred cccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe
Confidence 5788888888876555432 34333344333333222211 223346899999985543
No 312
>PHA03098 kelch-like protein; Provisional
Probab=40.89 E-value=3.8e+02 Score=26.65 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCc--ceEEEecCCCEEEEEeCCC--------CEEEEEEecC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFA--NGVALSRDEDYVVVCESWK--------FRCRKYWLKG 238 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~p--ngia~~~dg~~l~v~~t~~--------~~i~~~~~~g 238 (360)
..+.+||+.+++++.... +..+ ..-+...++ .+|+..... ..+.+||+..
T Consensus 406 ~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDG-KIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ceEEEEeCCCCeeeecCC-CCccccCceEEEECC-EEEEECCccCCCCCcccceEEEecCCC
Confidence 568999999888776432 2211 111222344 477775321 2378888754
No 313
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=40.31 E-value=9.4 Score=29.20 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=0.0
Q ss_pred cccccccchhhhccc
Q 018144 14 KGRTSSKLFVPACYS 28 (360)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (360)
.+||+.+.+...+++
T Consensus 23 ~~rR~~k~~~~i~~s 37 (106)
T PF11837_consen 23 RRRRPLKCLAAIFSS 37 (106)
T ss_dssp ---------------
T ss_pred CcCCcchhHHHHHHH
Confidence 455555665555554
No 314
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=39.90 E-value=94 Score=29.69 Aligned_cols=62 Identities=19% Similarity=0.409 Sum_probs=42.2
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcC----------------cceeeeccC---------------CCCCCcee
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERK----------------GKLETFAEN---------------LPGAPDNI 258 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~----------------~~~~~~~~~---------------~~g~pd~i 258 (360)
..+-++-|.++||++.+..+-|.+||+..++. ....++.+. +.|.|.=+
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~GGPQMl 394 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLRGGPQML 394 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCccccCCceeE
Confidence 35778889999999999988899999864321 111222111 23456667
Q ss_pred EEcCCC-CEEEEEe
Q 018144 259 NLAPDG-TFWIAII 271 (360)
Q Consensus 259 ~~d~~G-~lwva~~ 271 (360)
.++-|| +|||++.
T Consensus 395 QLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 395 QLSLDGKRLYVTNS 408 (476)
T ss_pred EeccCCcEEEEEch
Confidence 788888 7999875
No 315
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=39.68 E-value=3.8e+02 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=19.5
Q ss_pred CCcceEEEcCCCCEEEEe-cCCeEEEEE-CC
Q 018144 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ-DG 107 (360)
Q Consensus 79 ~~Pe~i~~d~~G~l~v~~-~~G~I~~~~-~g 107 (360)
..--++++..+|.+.+.. .+|.+..++ +|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G 266 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG 266 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc
Confidence 345567888888876544 777666666 55
No 316
>PLN03160 uncharacterized protein; Provisional
Probab=39.41 E-value=15 Score=32.05 Aligned_cols=14 Identities=7% Similarity=-0.104 Sum_probs=7.0
Q ss_pred cccccccchhhhcc
Q 018144 14 KGRTSSKLFVPACY 27 (360)
Q Consensus 14 ~~~~~~~~~~~~~~ 27 (360)
.+||++.+|.....
T Consensus 31 ~~r~~~~~c~~~~~ 44 (219)
T PLN03160 31 TRRRNCIKCCGCIT 44 (219)
T ss_pred cccccceEEHHHHH
Confidence 34555555544443
No 317
>PF13964 Kelch_6: Kelch motif
Probab=38.25 E-value=58 Score=20.45 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=22.7
Q ss_pred cCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEe
Q 018144 157 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 203 (360)
Q Consensus 157 d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~ 203 (360)
.-+|+||+.=..... ......+.+||+.+++.+.+.
T Consensus 9 ~~~~~iyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 9 VVGGKIYVFGGYDNS-----------GKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EECCEEEEECCCCCC-----------CCccccEEEEcCCCCcEEECC
Confidence 346789985322110 223467999999999887653
No 318
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=37.72 E-value=91 Score=29.66 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=33.7
Q ss_pred cEEEEEcCCCCeEEEEeCCCcC--cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCc
Q 018144 187 GQLLKYDPSSNITTLVADGFYF--ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKG 242 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~--pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~ 242 (360)
+.||.||.++-..-....++.+ -..+++++||..|+++++.+. +..+..++.+.+
T Consensus 321 ~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy-CS~vtfe~~elg 377 (434)
T KOG1009|consen 321 NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF-CSLVTFEPWELG 377 (434)
T ss_pred ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc-eEEEEEcchhcc
Confidence 4677777653332223334333 357999999999999988654 555555544444
No 319
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=37.69 E-value=3.8e+02 Score=25.73 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=34.4
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEE
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 268 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv 268 (360)
..+..+++++|+.++ ++.+..+.++.+|... +......+....++.+++.|+-+....
T Consensus 124 ~diydL~Ws~d~~~l-~s~s~dns~~l~Dv~~---G~l~~~~~dh~~yvqgvawDpl~qyv~ 181 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFL-VSGSVDNSVRLWDVHA---GQLLAILDDHEHYVQGVAWDPLNQYVA 181 (434)
T ss_pred cchhhhhccCCCcee-eeeeccceEEEEEecc---ceeEeeccccccccceeecchhhhhhh
Confidence 457789999999744 5555566777788742 222222223334667777666544333
No 320
>PLN02193 nitrile-specifier protein
Probab=37.66 E-value=4.1e+02 Score=26.10 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCeEEEEeCCC--cCc---ceEEEecCCCEEEEEeCCC-----CEEEEEEecC
Q 018144 187 GQLLKYDPSSNITTLVADGF--YFA---NGVALSRDEDYVVVCESWK-----FRCRKYWLKG 238 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l--~~p---ngia~~~dg~~l~v~~t~~-----~~i~~~~~~g 238 (360)
..+++||+.+.+++.+.... ..| ..++. -++ .+|+..-.. ..+.+|++..
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCC
Confidence 56999999988887654321 112 22322 233 477764321 3467787653
No 321
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=37.48 E-value=1.3e+02 Score=30.52 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=18.2
Q ss_pred cCCeEEEEeCCCcEEEEc-CCC
Q 018144 115 IDSHLIICDNANGLHKVS-EDG 135 (360)
Q Consensus 115 ~~g~L~v~~~~~gl~~~~-~~g 135 (360)
.++.||||+..+.++.+| .+|
T Consensus 213 vgdtlYvcTphn~v~ALDa~TG 234 (773)
T COG4993 213 VGDTLYVCTPHNRVFALDAATG 234 (773)
T ss_pred ECCEEEEecCcceeEEeeccCC
Confidence 378899999988999999 777
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.26 E-value=4.7e+02 Score=26.75 Aligned_cols=49 Identities=18% Similarity=0.079 Sum_probs=30.9
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
.+.+..||=+++++..-.+ ..|..+.++.+|..+-++.....-|++|+.
T Consensus 443 s~~~~fydW~~~~lVrrI~--v~~k~v~w~d~g~lVai~~d~Sfyil~~n~ 491 (794)
T KOG0276|consen 443 SDFLCFYDWESGELVRRIE--VTSKHVYWSDNGELVAIAGDDSFYILKFNA 491 (794)
T ss_pred CCeEEEEEcccceEEEEEe--eccceeEEecCCCEEEEEecCceeEEEecH
Confidence 3556667755565543222 256778888888866666655556777764
No 323
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=35.26 E-value=1.1e+02 Score=20.32 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=27.2
Q ss_pred eeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEe
Q 018144 257 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV 324 (360)
Q Consensus 257 ~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ 324 (360)
.+++.+||.|.++-..... .......|.|++++|.+=.+|.
T Consensus 5 ~~~~q~DGkIlv~G~~~~~---------------------------~~~~~~~l~Rln~DGsLDttFg 45 (55)
T TIGR02608 5 AVAVQSDGKILVAGYVDNS---------------------------SGNNDFVLARLNADGSLDTTFG 45 (55)
T ss_pred EEEECCCCcEEEEEEeecC---------------------------CCcccEEEEEECCCCCccCCcC
Confidence 5778889999987653100 0122357899999998766653
No 324
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.09 E-value=4.1e+02 Score=25.41 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=16.7
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
.....+.+++||++|.-.... ...+++.
T Consensus 187 ~eV~DL~FS~dgk~lasig~d--~~~VW~~ 214 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLASIGAD--SARVWSV 214 (398)
T ss_pred CccccceeCCCCcEEEEecCC--ceEEEEe
Confidence 346789999999855333333 3444444
No 325
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=34.72 E-value=4e+02 Score=25.22 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=58.2
Q ss_pred eeEEEecCCeEEEEeCC-CcEEE-Ec-CCC-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccC
Q 018144 109 WVNWKFIDSHLIICDNA-NGLHK-VS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 184 (360)
Q Consensus 109 ~~~~~~~~g~L~v~~~~-~gl~~-~~-~~g-~~~l~~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~ 184 (360)
++.+....++=|.++.. .+..+ +| .+| ++.- ..|. ...+.++++.+.....|+ ..
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt---ltGh-i~~vr~vavS~rHpYlFs-----------------~g 212 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT---LTGH-IETVRGVAVSKRHPYLFS-----------------AG 212 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe---ecch-hheeeeeeecccCceEEE-----------------ec
Confidence 34444444455655533 44444 45 677 4321 1221 235678888877655554 22
Q ss_pred CccEEEEEcCCCCeEEE-EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 185 PHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 185 ~~g~l~~~d~~tg~~~~-~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
..+.|-++|....++.. +...+....++++.|.-+ ++++......+..+|+
T Consensus 213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDi 264 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDI 264 (460)
T ss_pred CCCeeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeee
Confidence 35678889987666543 223466777888888765 4445443344444454
No 326
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=34.10 E-value=4.5e+02 Score=25.60 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=11.1
Q ss_pred eEEEcCCCCEEEEe
Q 018144 83 DASMDKNGVIYTAT 96 (360)
Q Consensus 83 ~i~~d~~G~l~v~~ 96 (360)
.|..+.+|.+|+=+
T Consensus 279 ~i~~~enGDvYvfS 292 (435)
T PF14298_consen 279 GIWKDENGDVYVFS 292 (435)
T ss_pred eeeEeCCCCEEEEc
Confidence 57788899999655
No 327
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=34.00 E-value=5.5e+02 Score=26.52 Aligned_cols=74 Identities=14% Similarity=0.019 Sum_probs=41.6
Q ss_pred cccccEEEcCCCcE--EEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCc-CcceEEEecCCCEEEEEe
Q 018144 149 RFANDVVEASDGSL--YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSRDEDYVVVCE 225 (360)
Q Consensus 149 ~~~n~l~~d~dG~l--~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~-~pngia~~~dg~~l~v~~ 225 (360)
-..-++.+++|+++ |.-|.. +...=.|...|..||+. +.+.+. ..-++++.+|++.+|.+.
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~--------------G~e~y~lr~kdL~tg~~--~~d~i~~~~~~~~Wa~d~~~lfYt~ 192 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVL--------------GDEQYTLRFKDLATGEE--LPDEITNTSGSFAWAADGKTLFYTR 192 (682)
T ss_pred eeeeeeeeCCCCceEEEEEecc--------------cccEEEEEEEecccccc--cchhhcccccceEEecCCCeEEEEE
Confidence 34456677888863 333322 11222455566666654 223333 356788999998888876
Q ss_pred CCCC----EEEEEEecC
Q 018144 226 SWKF----RCRKYWLKG 238 (360)
Q Consensus 226 t~~~----~i~~~~~~g 238 (360)
...+ +|++..+.+
T Consensus 193 ~d~~~rp~kv~~h~~gt 209 (682)
T COG1770 193 LDENHRPDKVWRHRLGT 209 (682)
T ss_pred EcCCCCcceEEEEecCC
Confidence 5433 566655544
No 328
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.76 E-value=5.4e+02 Score=26.39 Aligned_cols=131 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred EeCCCcEEEEc-CCC-eEEEe-------eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEE
Q 018144 122 CDNANGLHKVS-EDG-VENFL-------SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 192 (360)
Q Consensus 122 ~~~~~gl~~~~-~~g-~~~l~-------~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~ 192 (360)
|..++.|+..| ..| .+.+. ......+...++.++..+.|.+.++ +...+-|..+
T Consensus 136 gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs-----------------Ggtek~lr~w 198 (735)
T KOG0308|consen 136 GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS-----------------GGTEKDLRLW 198 (735)
T ss_pred cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe-----------------cCcccceEEe
Q ss_pred cCCCCeEEEEeCC-CcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC-------CCCCCceeEEcCCC
Q 018144 193 DPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-------LPGAPDNINLAPDG 264 (360)
Q Consensus 193 d~~tg~~~~~~~~-l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~-------~~g~pd~i~~d~~G 264 (360)
||.+++-..-..+ -.....+.++.||. -.++.++.+.|..+++..+.--..-..... .+.+-.=+.-|++|
T Consensus 199 Dprt~~kimkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 199 DPRTCKKIMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred ccccccceeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCC
Q ss_pred CEEEEE
Q 018144 265 TFWIAI 270 (360)
Q Consensus 265 ~lwva~ 270 (360)
+|+.+.
T Consensus 278 ~i~~Td 283 (735)
T KOG0308|consen 278 NIYRTD 283 (735)
T ss_pred cEEecc
No 329
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.42 E-value=4.2e+02 Score=25.06 Aligned_cols=18 Identities=11% Similarity=0.453 Sum_probs=14.6
Q ss_pred CceeEEcCCCCEEEEEec
Q 018144 255 PDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 255 pd~i~~d~~G~lwva~~~ 272 (360)
..++++.+.|.+.++...
T Consensus 337 Vr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCAD 354 (406)
T ss_pred eeeeEEcCCCeEEEEEec
Confidence 567888999988888776
No 330
>PLN02153 epithiospecifier protein
Probab=32.88 E-value=4e+02 Score=24.62 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=13.1
Q ss_pred cEEEEEcCCCCeEEEEe
Q 018144 187 GQLLKYDPSSNITTLVA 203 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~ 203 (360)
..|.+||+++.+.+.+.
T Consensus 159 ~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 159 RTIEAYNIADGKWVQLP 175 (341)
T ss_pred ceEEEEECCCCeEeeCC
Confidence 35889999988887654
No 331
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=32.49 E-value=1.6e+02 Score=29.38 Aligned_cols=63 Identities=22% Similarity=0.172 Sum_probs=40.5
Q ss_pred cCcceEEEecCCCEEEEEeCC--CCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 207 YFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.+.|.+.++|.|+++.++.-. ++.+.-||.+-. ..............++..|+.|++.++...
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCccccccccceECCCCCEEEEeee
Confidence 578999999999988887654 566777876421 111111111123567888999988877554
No 332
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=32.12 E-value=4.1e+02 Score=24.55 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=43.4
Q ss_pred CCCEEEEEeCCC-CEEEEEEecCCcCcceeeeccCCC---CCCceeEEcCCCCEEEEEe-cCchhHHHHhhcchhHHHHH
Q 018144 217 DEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLP---GAPDNINLAPDGTFWIAII-KLDARRMKILNSSKLIKHVL 291 (360)
Q Consensus 217 dg~~l~v~~t~~-~~i~~~~~~g~~~~~~~~~~~~~~---g~pd~i~~d~~G~lwva~~-~~~~~~~~~~~~~~~~r~~~ 291 (360)
+.+.|++-+... +.|..||++..+....-.+....| +.+.++. .....+|+... .
T Consensus 54 ~~~yL~f~n~~~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~-~~~Dsi~l~~~~~------------------- 113 (333)
T PF13970_consen 54 GKKYLYFLNNYKSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFF-QNLDSIFLFNSYA------------------- 113 (333)
T ss_dssp TEEEEEEEE-ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EE-ESSSTTSEEEEGG-------------------
T ss_pred CcEEEEEEcCCCcceEEEEECCCCceeeeeeeeeECCCCccccccce-EcCCceEEEecCC-------------------
Confidence 334554666554 789999987654332222221111 1233444 33334555543 2
Q ss_pred HhCCccccccccCCCceEEEEECCCCcEEEEEeCCC---CC-c--cc--ceeeEEEECCEEEEEeC
Q 018144 292 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPT---GQ-L--MS--FVTSGLQVDNHLYVISL 349 (360)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~---g~-~--~~--~~t~~~~~~g~Lylgs~ 349 (360)
...+..+|.+|+++..+.-.. +. . +. ..+.+...++.+|++..
T Consensus 114 ---------------~~~l~~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (333)
T PF13970_consen 114 ---------------FPKLFLFNSQGEVLKKIDLEEEDLEFEPSEFPSFSNSPIFIKDNKLYFSQP 164 (333)
T ss_dssp ---------------GTEEEEE-TT--EEEEEE---TTS-------BTTTTB--EEETTEEEEE--
T ss_pred ---------------cceEEEEcCCCeEEEEEecccCcccccccccccccccceEeCCCeEEEeee
Confidence 247999999999988874322 11 1 11 01344445677787764
No 333
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.62 E-value=1.1e+02 Score=17.85 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=12.9
Q ss_pred cceEEEecCCCEEEEEeCC
Q 018144 209 ANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~ 227 (360)
-...+++|||+.++++...
T Consensus 11 ~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEEE-TTSSEEEEEEEC
T ss_pred ccCEEEecCCCEEEEEecC
Confidence 3456789999888777654
No 334
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.36 E-value=7.5e+02 Score=27.28 Aligned_cols=115 Identities=12% Similarity=-0.015 Sum_probs=60.6
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcceeeeccCCCC-CCceeEEcCCCCEEEEEecCchhHHHHhhcchh
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPG-APDNINLAPDGTFWIAIIKLDARRMKILNSSKL 286 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~~~~~g-~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~ 286 (360)
..++.+-+.|-.=+|+.+..+.|..+|+... +.....+...-..| --..+.+-++-.+......
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-------------- 1324 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-------------- 1324 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc--------------
Confidence 4566666666444567667788999998653 22222222111112 1234445444444443221
Q ss_pred HHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCC---CCCcccceeeEEEECCE-EEEEeCCCCeEEEEe
Q 018144 287 IKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP---TGQLMSFVTSGLQVDNH-LYVISLTSNFIGKVQ 358 (360)
Q Consensus 287 ~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~---~g~~~~~~t~~~~~~g~-Lylgs~~~~~i~~~~ 358 (360)
..+..++-+|+.+-.+... -|.....++++.++.-+ +..++...++|.++.
T Consensus 1325 ---------------------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1325 ---------------------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ---------------------ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 3455566666654433211 12234456888888743 444568888888875
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.76 E-value=1.8e+02 Score=27.77 Aligned_cols=81 Identities=7% Similarity=-0.025 Sum_probs=45.2
Q ss_pred EEEEcCCCCeEE-EEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC--CCC
Q 018144 189 LLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP--DGT 265 (360)
Q Consensus 189 l~~~d~~tg~~~-~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~--~G~ 265 (360)
+..+++.+-+.. .+.....+..+++++|.++.|....+.++.|..+++.... ....+ ..+..+-.++.|. ...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy--~a~~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSY--IAYNQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--eeehe--eccCCceeeeeccCCcce
Confidence 666665432221 1223345677899999887666666677889998875421 11111 1222344455543 335
Q ss_pred EEEEEecC
Q 018144 266 FWIAIIKL 273 (360)
Q Consensus 266 lwva~~~~ 273 (360)
||.|+..+
T Consensus 251 IYaGl~nG 258 (463)
T KOG1645|consen 251 IYAGLQNG 258 (463)
T ss_pred eEEeccCc
Confidence 77777653
No 336
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=30.22 E-value=7.1e+02 Score=26.69 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=48.2
Q ss_pred EeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcC-CCCEEEEEec
Q 018144 202 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIK 272 (360)
Q Consensus 202 ~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~ 272 (360)
...+...+.|++.+--++.+|+++.....+.+-++++.. ....+...+ ..|..+++++ .|-++...++
T Consensus 475 ~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~--~~vl~~~~l-~~~r~~~v~p~~g~~~wtd~~ 543 (877)
T KOG1215|consen 475 CGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS--RKVLVSKDL-DLPRSIAVDPEKGLMFWTDWG 543 (877)
T ss_pred eccCccccCcEEEEeccCCceecccCCceeEEEEccCCc--eeEEEecCC-CCccceeeccccCeeEEecCC
Confidence 456788899999998877899999998888888776643 222333233 5688899987 5555555555
No 337
>smart00284 OLF Olfactomedin-like domains.
Probab=29.95 E-value=4.1e+02 Score=23.84 Aligned_cols=15 Identities=7% Similarity=0.273 Sum_probs=11.8
Q ss_pred ccEEEEEcCCCCeEE
Q 018144 186 HGQLLKYDPSSNITT 200 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~ 200 (360)
...|.+||..++.+.
T Consensus 93 s~~iiKydL~t~~v~ 107 (255)
T smart00284 93 SHDICRFDLTTETYQ 107 (255)
T ss_pred CccEEEEECCCCcEE
Confidence 347999999888774
No 338
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.57 E-value=6.6e+02 Score=26.13 Aligned_cols=164 Identities=15% Similarity=0.067 Sum_probs=78.9
Q ss_pred CCCEEEEecCCeEEEEE--CCeee-----------E---EEecCCeEEEEeCCCcEEEEc-CCC-eEEEeeccCCccccc
Q 018144 89 NGVIYTATRDGWIKRLQ--DGTWV-----------N---WKFIDSHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRF 150 (360)
Q Consensus 89 ~G~l~v~~~~G~I~~~~--~g~~~-----------~---~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~ 150 (360)
.+.+...+.+..|+-++ +.++. . +...+..|.||+....+-.++ ++- -..+ .... ..
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii-~GH~----e~ 367 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQII-PGHT----EA 367 (775)
T ss_pred cCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEE-eCch----hh
Confidence 45555556666666665 33221 1 111245677777444444445 322 2222 1111 23
Q ss_pred cccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCC---cCcceEEEecCCCEEEEEeCC
Q 018144 151 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF---YFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 151 ~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l---~~pngia~~~dg~~l~v~~t~ 227 (360)
+..+++..+|.+.+|-+- ...-+++|+|.+..+...+.... ...-+++++..+-..+++-+.
T Consensus 368 vlSL~~~~~g~llat~sK---------------D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 368 VLSLDVWSSGDLLATGSK---------------DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred eeeeeecccCcEEEEecC---------------CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC
Confidence 556666677755554322 12346888864433332222221 223467777777777788776
Q ss_pred CCEEEEEEecCCcCccee-ee----cc-CCCCCCceeEEcCCCCEEEEEec
Q 018144 228 KFRCRKYWLKGERKGKLE-TF----AE-NLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 228 ~~~i~~~~~~g~~~~~~~-~~----~~-~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
...|..+.+...+..... .+ .. ....-.+.+++.++..|......
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq 483 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ 483 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence 554544444331111111 11 00 01123567888888776665443
No 339
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=29.50 E-value=2.3e+02 Score=23.34 Aligned_cols=12 Identities=0% Similarity=-0.020 Sum_probs=6.2
Q ss_pred CCCcceEEEcCC
Q 018144 78 VNHPEDASMDKN 89 (360)
Q Consensus 78 ~~~Pe~i~~d~~ 89 (360)
+..|.+|..+++
T Consensus 59 ~V~~GSv~r~~~ 70 (155)
T PRK13159 59 MVKAGSIQRAAD 70 (155)
T ss_pred EEecCcEEEcCC
Confidence 445555555443
No 340
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=29.33 E-value=1.4e+02 Score=18.88 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=21.4
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCCc
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGER 240 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~ 240 (360)
..-++++|..+ |+...+..+.|..|.+++++
T Consensus 14 v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 14 VSCMSWCPTMD-LIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred EEEEEECCCCC-EEEEEECCCeEEEEECCCcC
Confidence 34678889888 54555557788888876643
No 341
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=27.69 E-value=49 Score=24.84 Aligned_cols=29 Identities=7% Similarity=0.104 Sum_probs=13.5
Q ss_pred cccchhhhccchhHHHHHHHHHHHHHhccCCC
Q 018144 18 SSKLFVPACYSFGFLLVCLIAFLLQIVYFSPI 49 (360)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 49 (360)
..+|...++. +++++.+.+++++...||+
T Consensus 14 g~sW~~LVGV---v~~al~~SlLIalaaKC~~ 42 (102)
T PF15176_consen 14 GRSWPFLVGV---VVTALVTSLLIALAAKCPV 42 (102)
T ss_pred CcccHhHHHH---HHHHHHHHHHHHHHHHhHH
Confidence 5566433333 2334444555555555653
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=27.66 E-value=7.7e+02 Score=26.25 Aligned_cols=89 Identities=12% Similarity=0.027 Sum_probs=46.8
Q ss_pred ccEEEEEcCCCCeEEEEeC-CCcC-cceE-------EEecCCCEEEEEeCCCCEEEEEEec--CCcCc--ceeeeccCCC
Q 018144 186 HGQLLKYDPSSNITTLVAD-GFYF-ANGV-------ALSRDEDYVVVCESWKFRCRKYWLK--GERKG--KLETFAENLP 252 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~-~l~~-pngi-------a~~~dg~~l~v~~t~~~~i~~~~~~--g~~~~--~~~~~~~~~~ 252 (360)
...||++|..+|++..--. .-.. ...+ .+.+. + .|++-+ .++|+|+|+. +.+.- +...+.. ..
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e-~-tflGls-~n~lfriDpR~~~~k~v~~~~k~Y~~-~~ 578 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNE-Q-TFLGLS-DNSLFRIDPRLSGNKLVDSQSKQYSS-KN 578 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCC-c-eEEEEC-CCceEEeccCCCCCceeecccccccc-CC
Confidence 3579999999888743211 1111 1111 22232 2 344443 4679999974 21111 1111111 11
Q ss_pred CCCceeEEcCCCCEEEEEecCchhHHH
Q 018144 253 GAPDNINLAPDGTFWIAIIKLDARRMK 279 (360)
Q Consensus 253 g~pd~i~~d~~G~lwva~~~~~~~~~~ 279 (360)
--..++.+.+|+|-||...+..++.|
T Consensus 579 -~Fs~~aTt~~G~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 579 -NFSCFATTEDGYIAVGSNKGDIRLYD 604 (794)
T ss_pred -CceEEEecCCceEEEEeCCCcEEeec
Confidence 12357789999999999886555544
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=26.56 E-value=2.2e+02 Score=29.29 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=49.4
Q ss_pred cCCccEEEEEcCCCCeEEEEeCCC--cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccC---CCCCCce
Q 018144 183 GKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN---LPGAPDN 257 (360)
Q Consensus 183 ~~~~g~l~~~d~~tg~~~~~~~~l--~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~---~~g~pd~ 257 (360)
+...|.||-|+..+++...+..+. ...-...++++.. +.++.+.+++|..|-++.........+... .+.....
T Consensus 51 GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTa 129 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTA 129 (726)
T ss_pred ecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEE
Confidence 344677888887766554433211 1122344666654 777777788888877653222222222111 1223445
Q ss_pred eEEcCCC-CEEEEEec
Q 018144 258 INLAPDG-TFWIAIIK 272 (360)
Q Consensus 258 i~~d~~G-~lwva~~~ 272 (360)
+..+.+| .+|.|...
T Consensus 130 l~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 130 LEWSKNGMKLYSGDSQ 145 (726)
T ss_pred EEecccccEEeecCCC
Confidence 6678888 68888776
No 344
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=25.81 E-value=1.8e+02 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=22.6
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 201 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~ 201 (360)
.|+.+....+|+ +.+ +...|.|..+|-.|+++..
T Consensus 131 GPY~~~ytrnGrhlll------------------gGrKGHlAa~Dw~t~~L~~ 165 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLL------------------GGRKGHLAAFDWVTKKLHF 165 (545)
T ss_pred CCeeeeecCCccEEEe------------------cCCccceeeeecccceeee
Confidence 466777777775 434 3345778888887777654
No 345
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.55 E-value=8.4e+02 Score=26.01 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=35.7
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCC-cCcceeeeccCCCCCCceeEEcCCCC--EEEEEec
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPGAPDNINLAPDGT--FWIAIIK 272 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~~~~~g~pd~i~~d~~G~--lwva~~~ 272 (360)
..++++.+-+ .+++...++.|.+|.-+-- ..+....+.........|+++-.+|. ++|++..
T Consensus 129 s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~ 193 (933)
T KOG2114|consen 129 SSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE 193 (933)
T ss_pred eEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc
Confidence 3577888865 6677777888888753310 11222222222333467888766664 5888765
No 346
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=25.33 E-value=1.1e+02 Score=24.15 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=6.6
Q ss_pred ccccccccchhhhcc
Q 018144 13 KKGRTSSKLFVPACY 27 (360)
Q Consensus 13 ~~~~~~~~~~~~~~~ 27 (360)
+.|||.-.|.+..++
T Consensus 12 ~~~~~~~~~~~~~~~ 26 (128)
T PRK13717 12 APRRSHWWWTVPGCL 26 (128)
T ss_pred ccchhcchHHHHHHH
Confidence 344444555444333
No 347
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=25.02 E-value=2.7e+02 Score=21.71 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=13.4
Q ss_pred cceEEEecCCCEEEEEeCCC
Q 018144 209 ANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~ 228 (360)
-.|++++|+....+-+....
T Consensus 42 ~~Gla~Dpetge~i~~~g~~ 61 (119)
T PF14251_consen 42 DKGLAVDPETGEVIPCRGKV 61 (119)
T ss_pred cccceeCCCCCCEEEEecCC
Confidence 34788888766676666543
No 348
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=24.63 E-value=5.2e+02 Score=23.21 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=44.8
Q ss_pred cccccccEEEcC-CCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCC-CcCcceEEE-ecCCCEEEE
Q 018144 147 KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVAL-SRDEDYVVV 223 (360)
Q Consensus 147 ~~~~~n~l~~d~-dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~-l~~pngia~-~~dg~~l~v 223 (360)
....+|.+.+|| .+.|+++ ..++.+|.+|.++|+++....+ ..+...++. +..++.|=-
T Consensus 113 evPeINam~ldP~enSi~~A------------------gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG 174 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFA------------------GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSG 174 (325)
T ss_pred cCCccceeEeccCCCcEEEe------------------cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeec
Confidence 345789999995 4567773 2467899999999999876554 234555555 445544422
Q ss_pred EeCCCCEEEEEEecC
Q 018144 224 CESWKFRCRKYWLKG 238 (360)
Q Consensus 224 ~~t~~~~i~~~~~~g 238 (360)
+| .+.+..+|.+.
T Consensus 175 ~E--DGtvRvWd~kt 187 (325)
T KOG0649|consen 175 AE--DGTVRVWDTKT 187 (325)
T ss_pred CC--CccEEEEeccc
Confidence 33 33455555543
No 349
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=24.56 E-value=1.4e+02 Score=17.18 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=16.8
Q ss_pred CcceEEEcCCCCEEEEecCCeEEEE
Q 018144 80 HPEDASMDKNGVIYTATRDGWIKRL 104 (360)
Q Consensus 80 ~Pe~i~~d~~G~l~v~~~~G~I~~~ 104 (360)
....|.+.+++.+|.-+.+|.||+.
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3445566666778877777777764
No 350
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=24.32 E-value=6.6e+02 Score=24.32 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=40.4
Q ss_pred cccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCC-CeEEEEeCCCcCcceEEEecCCCEEEEEeCC
Q 018144 149 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADGFYFANGVALSRDEDYVVVCESW 227 (360)
Q Consensus 149 ~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-g~~~~~~~~l~~pngia~~~dg~~l~v~~t~ 227 (360)
..+.+|.++|+|....|-++ ++.+-.+|... ..+..+...-.....|.++|+....+++.+.
T Consensus 346 k~I~~V~fsPNGy~lATgs~-----------------Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSS-----------------DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred cceeeEeECCCceEEeecCC-----------------CCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 45789999999988887543 33333344321 1222222223345678999865556667666
Q ss_pred CCEEEEEE
Q 018144 228 KFRCRKYW 235 (360)
Q Consensus 228 ~~~i~~~~ 235 (360)
.+.+..+.
T Consensus 409 D~t~kiWs 416 (459)
T KOG0272|consen 409 DNTVKIWS 416 (459)
T ss_pred Ccceeeec
Confidence 66555443
No 351
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=24.17 E-value=8.7e+02 Score=25.67 Aligned_cols=131 Identities=17% Similarity=0.101 Sum_probs=0.0
Q ss_pred eEEEcCCCCEEEEe-cCCeEEEEE-CC------------------eeeEEEecCCeEEEEeCCCcEEEEc-CCC-eEEEe
Q 018144 83 DASMDKNGVIYTAT-RDGWIKRLQ-DG------------------TWVNWKFIDSHLIICDNANGLHKVS-EDG-VENFL 140 (360)
Q Consensus 83 ~i~~d~~G~l~v~~-~~G~I~~~~-~g------------------~~~~~~~~~g~L~v~~~~~gl~~~~-~~g-~~~l~ 140 (360)
+.++.+++....+. .+|+|..+. -| ....|...+..||-|....-+.+.. .++ .+.|.
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP 289 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP 289 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccc
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEEEeCCCcCc-----------
Q 018144 141 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA----------- 209 (360)
Q Consensus 141 ~~~~~~~~~~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~~~~~l~~p----------- 209 (360)
..... +-++.+.+|+..|-. ...++.+..+...+-+.+....++..+
T Consensus 290 RLgs~-----I~~i~vS~ds~~~sl-----------------~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 290 RLGSP-----ILHIVVSPDSDLYSL-----------------VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred ccCCe-----eEEEEEcCCCCeEEE-----------------EecCceEEEEeccchhhhhhccCccCCCcccccccccc
Q ss_pred -ceEEEecCCCEEEEEeCCCCEEEEEEe
Q 018144 210 -NGVALSRDEDYVVVCESWKFRCRKYWL 236 (360)
Q Consensus 210 -ngia~~~dg~~l~v~~t~~~~i~~~~~ 236 (360)
.+++++|--+ -.+-..-.+.|.-|++
T Consensus 348 ~t~~~idpr~~-~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 348 TTGVSIDPRTN-SLVLNGHPGHVQFYDL 374 (792)
T ss_pred ceeEEEcCCCC-ceeecCCCceEEEEec
No 352
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.99 E-value=6.6e+02 Score=24.25 Aligned_cols=52 Identities=15% Similarity=-0.089 Sum_probs=31.7
Q ss_pred ccEEEEEcCCCCeEEEEeCCCcCcceEEEecCCCEEEEEeCCCCEEEEEEecC
Q 018144 186 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 238 (360)
Q Consensus 186 ~g~l~~~d~~tg~~~~~~~~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g 238 (360)
.+.|-.+|-.+...............+.++.+|..+..+ +..+.+..+|..+
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt 372 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRT 372 (459)
T ss_pred ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeeccc
Confidence 345666774444443333333456677888888877777 4456677787654
No 353
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.11 E-value=6.7e+02 Score=23.98 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=61.1
Q ss_pred ceEEEecC-CCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhH
Q 018144 210 NGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLI 287 (360)
Q Consensus 210 ngia~~~d-g~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~ 287 (360)
.++.|-++ -.+-+++-|.-+.+..||+..+. .-+..|. ........+..+++|+ ||+|+..
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~~--------------- 268 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFD-FLENPISSTGLTPSGNFIYTGNTK--------------- 268 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccC-cceeEec-cccCcceeeeecCCCcEEEEeccc---------------
Confidence 45666554 13466677767788899975321 1111111 1111235577788897 7777654
Q ss_pred HHHHHhCCccccccccCCCceEEEEECCC-CcEEEE-EeCCCCCcccceeeEEEECCEEEEEeCCCCeEEE
Q 018144 288 KHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRN-LVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGK 356 (360)
Q Consensus 288 r~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~-~~~~~g~~~~~~t~~~~~~g~Lylgs~~~~~i~~ 356 (360)
+.+..||-. ++..-. +.+-.| .++++..+.+.=|+++..=++..|
T Consensus 269 --------------------g~l~~FD~r~~kl~g~~~kg~tG----sirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 269 --------------------GQLAKFDLRGGKLLGCGLKGITG----SIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred --------------------chhheecccCceeeccccCCccC----CcceEEEcCCCceEEeeccceeEE
Confidence 678888864 444444 444344 578888887655566655555444
No 354
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=23.04 E-value=3.7e+02 Score=26.85 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=27.9
Q ss_pred eEEEEECC--CCcEEEEEeCCC-CCcccceeeEEEECCEEEEEeCCCC
Q 018144 308 AHLIHVAE--DGTIIRNLVDPT-GQLMSFVTSGLQVDNHLYVISLTSN 352 (360)
Q Consensus 308 ~~v~~~~~--~g~~~~~~~~~~-g~~~~~~t~~~~~~g~Lylgs~~~~ 352 (360)
..|+++|| .|..+.+.+..+ .....+.+.+.-..|++-+++-.++
T Consensus 537 ~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGD 584 (776)
T COG5167 537 YSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGD 584 (776)
T ss_pred cceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCc
Confidence 47999998 575555444322 1124445555555689988887765
No 355
>PHA03098 kelch-like protein; Provisional
Probab=23.02 E-value=7.5e+02 Score=24.50 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCeEEEEeCCCcCcc--eEEEecCCCEEEEEeCC------CCEEEEEEecC
Q 018144 187 GQLLKYDPSSNITTLVADGFYFAN--GVALSRDEDYVVVCESW------KFRCRKYWLKG 238 (360)
Q Consensus 187 g~l~~~d~~tg~~~~~~~~l~~pn--gia~~~dg~~l~v~~t~------~~~i~~~~~~g 238 (360)
..+.+||+.+++++... .+..|. ..+..-++ .+|+.... ...+.+||+..
T Consensus 358 ~~v~~yd~~~~~W~~~~-~lp~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 358 NTVESWKPGESKWREEP-PLIFPRYNPCVVNVNN-LIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred ceEEEEcCCCCceeeCC-CcCcCCccceEEEECC-EEEEECCcCCCCcccceEEEEeCCC
Confidence 46889999988876543 222221 11222344 47776431 14578888754
No 356
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=22.28 E-value=1.4e+02 Score=24.57 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=10.8
Q ss_pred CCccccccccchhhhcc
Q 018144 11 TSKKGRTSSKLFVPACY 27 (360)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (360)
++.+.|..+.|++.+..
T Consensus 9 ~~~~~~k~~~~I~liv~ 25 (159)
T COG1580 9 APAKKKKKSLWILLIVL 25 (159)
T ss_pred CCccCCCceeehHHHHH
Confidence 45555666888766555
No 357
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=22.26 E-value=77 Score=26.85 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=6.7
Q ss_pred ccccccccchhh
Q 018144 13 KKGRTSSKLFVP 24 (360)
Q Consensus 13 ~~~~~~~~~~~~ 24 (360)
+.++|+++|...
T Consensus 2 ~p~~r~~~w~~~ 13 (217)
T PF11807_consen 2 RPRRRRRRWRRL 13 (217)
T ss_pred CCCCCCccHHHH
Confidence 455566666544
No 358
>TIGR02554 PrgH type III secretion system protein PrgH/EprH. In Samonella, this gene is part of a four-gene operon PrgHIJK and in general is found in type III secretion operons. PrgH has been shown to be required for secretion, as well as being a structural component of the needle complex.
Probab=22.09 E-value=97 Score=29.65 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=18.2
Q ss_pred cceEecCCCCCCcceEEEcCCCCEEEEe
Q 018144 69 DFIKVGEGSVNHPEDASMDKNGVIYTAT 96 (360)
Q Consensus 69 ~~~~~~~~~~~~Pe~i~~d~~G~l~v~~ 96 (360)
....+..| -.+|-.|..++||.+|+-.
T Consensus 169 ~L~~lL~g-~~~p~~il~grDg~iyVla 195 (389)
T TIGR02554 169 ELNGLLGG-APVRFAVLPGRDGRIYVAA 195 (389)
T ss_pred HHHHHhcC-CCCCeEEEeCCCCcEEEEE
Confidence 33434434 4788888888888888765
No 359
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=22.09 E-value=8.8e+02 Score=25.00 Aligned_cols=70 Identities=21% Similarity=0.398 Sum_probs=44.6
Q ss_pred hhcccceEecCCCCCCcceEE--------EcCCCCEEEEecCCeEEEEE--CCeeeEEEe--------------------
Q 018144 65 TQLQDFIKVGEGSVNHPEDAS--------MDKNGVIYTATRDGWIKRLQ--DGTWVNWKF-------------------- 114 (360)
Q Consensus 65 ~~l~~~~~~~~~~~~~Pe~i~--------~d~~G~l~v~~~~G~I~~~~--~g~~~~~~~-------------------- 114 (360)
..|+.+=++..|.+..|+++- .--++.||+.+.-.+++.+| +|+. .|..
T Consensus 182 ~nL~~AWty~TGD~k~~~d~~e~t~e~tPLkvgdtlYvcTphn~v~ALDa~TGke-kWkydp~~~~nv~~~~~tCrgVsy 260 (773)
T COG4993 182 GNLQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDTLYVCTPHNRVFALDAATGKE-KWKYDPNLKSNVDPQHQTCRGVSY 260 (773)
T ss_pred hccceeEEEecCcccCCCCcccccccccceEECCEEEEecCcceeEEeeccCCce-eeecCCCCCCCcccccccccceec
Confidence 345666666667778887721 11267899998877888888 5531 1110
Q ss_pred ----------cCCeEEEEeCCCcEEEEc-CCC
Q 018144 115 ----------IDSHLIICDNANGLHKVS-EDG 135 (360)
Q Consensus 115 ----------~~g~L~v~~~~~gl~~~~-~~g 135 (360)
+..|||..+.+..++.+| .+|
T Consensus 261 ~~a~a~~k~pc~~rIflpt~DarlIALdA~tG 292 (773)
T COG4993 261 GAAKADAKSPCPRRIFLPTADARLIALDADTG 292 (773)
T ss_pred ccccccccCCCceeEEeecCCceEEEEeCCCC
Confidence 124577777777788888 666
No 360
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=21.76 E-value=6.2e+02 Score=23.09 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCeEE---EEeCCCcCc--ceEEEecCCCEEEEEeCC-----CCEEEEEEecC
Q 018144 187 GQLLKYDPSSNITT---LVADGFYFA--NGVALSRDEDYVVVCESW-----KFRCRKYWLKG 238 (360)
Q Consensus 187 g~l~~~d~~tg~~~---~~~~~l~~p--ngia~~~dg~~l~v~~t~-----~~~i~~~~~~g 238 (360)
..+++||+.+.+.+ .....+..+ +..+..-++ .+|+..-. .+.+++||+..
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECC-EEEEEeCcCCCccCceEEEEcCCC
Confidence 46889988766642 112233332 122222344 48877432 24688898754
No 361
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=21.62 E-value=8.7e+02 Score=24.78 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=42.3
Q ss_pred cCcceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCC--CCceeEEcCCC-CEEEEEecCchhHHHHhhc
Q 018144 207 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG--APDNINLAPDG-TFWIAIIKLDARRMKILNS 283 (360)
Q Consensus 207 ~~pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g--~pd~i~~d~~G-~lwva~~~~~~~~~~~~~~ 283 (360)
..+..+.|.|-.-+++|+... .|..|++..+.+ ....++| ..+.+++.+.| ||.++....+..+.|+-..
T Consensus 567 G~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqel-----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQEL-----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred CceeEEEecCCCceEEEEecc--ceEEEehhHHHH-----HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 357788899988889998764 477788643211 1111121 24566676666 6777776666555555444
No 362
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=21.61 E-value=7.1e+02 Score=23.76 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=53.8
Q ss_pred ccccEEEcCCCc-EEEEeCCCCCCCccceecccccCCccEEEEEcCCCC--eEEEEeCCCcCcceEEEecCCCEEEEEeC
Q 018144 150 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTLVADGFYFANGVALSRDEDYVVVCES 226 (360)
Q Consensus 150 ~~n~l~~d~dG~-l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg--~~~~~~~~l~~pngia~~~dg~~l~v~~t 226 (360)
.++.+...++|+ +++++++ ..-.++.|+.+.. +.......-..|+.+.+..+.....|++.
T Consensus 64 a~~~~~~s~~~~llAv~~~~----------------K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dk 127 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSS----------------KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADK 127 (390)
T ss_pred cccccccCCCceEEEEEeCC----------------CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEee
Confidence 345556666675 6676654 1112555554322 11111223346788888777777888886
Q ss_pred CCCEEEEEEecCC-------cCcceeeeccCCCCCCce---eEEcCCCCEEEEEec
Q 018144 227 WKFRCRKYWLKGE-------RKGKLETFAENLPGAPDN---INLAPDGTFWIAIIK 272 (360)
Q Consensus 227 ~~~~i~~~~~~g~-------~~~~~~~~~~~~~g~pd~---i~~d~~G~lwva~~~ 272 (360)
. +.++.|+.-.. .++....+.+. .-.||+ |.-|+|+.|||.-..
T Consensus 128 a-gD~~~~di~s~~~~~~~~~lGhvSml~dV-avS~D~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 128 A-GDVYSFDILSADSGRCEPILGHVSMLLDV-AVSPDDQFIITADRDEKIRVSRYP 181 (390)
T ss_pred c-CCceeeeeecccccCcchhhhhhhhhhee-eecCCCCEEEEecCCceEEEEecC
Confidence 5 44666665321 12222222211 112444 334777888887665
No 363
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=21.30 E-value=8e+02 Score=24.23 Aligned_cols=102 Identities=13% Similarity=0.170 Sum_probs=52.5
Q ss_pred ceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCC---------------CCCceeEEcCCCC--EEEEEec
Q 018144 210 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP---------------GAPDNINLAPDGT--FWIAIIK 272 (360)
Q Consensus 210 ngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~---------------g~pd~i~~d~~G~--lwva~~~ 272 (360)
.-+-++|||+.+|+-.. +.+..+.++.......+. .+..| |.-.=+..++||- =|.-...
T Consensus 224 ~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rkl-~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 224 SQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRKL-VDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred HhhEECCCCCEEEEecC--CeEEEEeecccccchhhh-hhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 45779999999999864 567778776433222222 12212 2122245577773 3443222
Q ss_pred CchhHHHHhhcchhHHHH-HHhC-CccccccccCCCceEEEEECCCCcEEEEE
Q 018144 273 LDARRMKILNSSKLIKHV-LAAY-PKLFSQFITLGGGAHLIHVAEDGTIIRNL 323 (360)
Q Consensus 273 ~~~~~~~~~~~~~~~r~~-~~~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~~ 323 (360)
...|.+.++ .+++ |+.++-+-+....-+.+.++++|+.-..+
T Consensus 301 ---------~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~ 344 (733)
T COG4590 301 ---------DGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFY 344 (733)
T ss_pred ---------CCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeee
Confidence 112333332 3333 23333333334445677888888754433
No 364
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=21.06 E-value=1.8e+02 Score=27.16 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=0.0
Q ss_pred cEEEEEcCCC-CeEEEEeC------CCcCcceEEEecCC--CEEEEEeCCCCEEEEEEecCC
Q 018144 187 GQLLKYDPSS-NITTLVAD------GFYFANGVALSRDE--DYVVVCESWKFRCRKYWLKGE 239 (360)
Q Consensus 187 g~l~~~d~~t-g~~~~~~~------~l~~pngia~~~dg--~~l~v~~t~~~~i~~~~~~g~ 239 (360)
..||.+|.++ |++..... ++..|..+..+.|| +.+|+.+. .+.|+|+++.+.
T Consensus 181 ~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~~ 241 (335)
T PF05567_consen 181 AALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSSA 241 (335)
T ss_dssp EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEET-TSEEEEEE--TT
T ss_pred cEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcC-CCcEEEEECCCC
No 365
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=20.69 E-value=1.1e+03 Score=25.51 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=41.4
Q ss_pred EEEEEcCCCCeEEEE-eCCCcCcceEEEecCCCEEEEE---eC--CCCEEEEEEecCCcCcceeeeccCCCCCCceeEEc
Q 018144 188 QLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVC---ES--WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 261 (360)
Q Consensus 188 ~l~~~d~~tg~~~~~-~~~l~~pngia~~~dg~~l~v~---~t--~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d 261 (360)
+|...|-+....+.+ ...-.-...-+++|||+.+-.| +. +...|++-++.....+..+.-.+ ...+|. -.+-
T Consensus 330 ~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve-~aaipr-wrv~ 407 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE-NAAIPR-WRVL 407 (912)
T ss_pred eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc-cccccc-eEec
Confidence 555555543333333 2221122234688999877762 22 33458888876543333332222 222443 3444
Q ss_pred CCCC---EEEEEecCc
Q 018144 262 PDGT---FWIAIIKLD 274 (360)
Q Consensus 262 ~~G~---lwva~~~~~ 274 (360)
++|. +||+..+..
T Consensus 408 e~gdt~ivyv~~a~nn 423 (912)
T TIGR02171 408 ENGDTVIVYVSDASNN 423 (912)
T ss_pred CCCCeEEEEEcCCCCC
Confidence 4453 666665543
No 366
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.65 E-value=1e+03 Score=25.11 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=34.7
Q ss_pred cceEEEecCCCEEEEEeCCCCEEEEEEecCCcCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 018144 209 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 272 (360)
Q Consensus 209 pngia~~~dg~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~ 272 (360)
.-.+.++|||++|-|+- -++.+..|-++.-+. ....+.-.+| .-.+-+.+|+++.|+...
T Consensus 511 vL~v~~Spdgk~LaVsL-LdnTVkVyflDtlKF-flsLYGHkLP--V~smDIS~DSklivTgSA 570 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSL-LDNTVKVYFLDTLKF-FLSLYGHKLP--VLSMDISPDSKLIVTGSA 570 (888)
T ss_pred EEEEEEcCCCcEEEEEe-ccCeEEEEEecceee-eeeecccccc--eeEEeccCCcCeEEeccC
Confidence 34678999999666655 467888888764221 1112221233 234555677777776554
No 367
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=20.50 E-value=8e+02 Score=23.89 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=8.9
Q ss_pred eeEEcCCCCEEE
Q 018144 257 NINLAPDGTFWI 268 (360)
Q Consensus 257 ~i~~d~~G~lwv 268 (360)
.+.+.++|.|+|
T Consensus 236 q~~vtpqg~i~v 247 (521)
T KOG1230|consen 236 QFSVTPQGGIVV 247 (521)
T ss_pred eEEecCCCcEEE
Confidence 366778888877
No 368
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=20.29 E-value=2.6e+02 Score=25.33 Aligned_cols=67 Identities=18% Similarity=0.053 Sum_probs=39.5
Q ss_pred ccccEEEcCCCcEEEEeCCCCCCCccceecccccCCccEEEEEcCCCCeEEE-EeCCCcCcceEEEecCCCEEEEEeCCC
Q 018144 150 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWK 228 (360)
Q Consensus 150 ~~n~l~~d~dG~l~vtd~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tg~~~~-~~~~l~~pngia~~~dg~~l~v~~t~~ 228 (360)
.++++.+-+|+.|..| ...++|+-.|+=.|...-. +...-...|.++++||-. +..+.+..
T Consensus 253 Gv~gvrIRpD~KIlAT-----------------AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaaskD 314 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILAT-----------------AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKD 314 (323)
T ss_pred CccceEEccCCcEEee-----------------cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhccCC
Confidence 4788999999999886 2234444444433343221 211224578999999954 55555555
Q ss_pred CEEEEE
Q 018144 229 FRCRKY 234 (360)
Q Consensus 229 ~~i~~~ 234 (360)
.+|.-+
T Consensus 315 ~rISLW 320 (323)
T KOG0322|consen 315 ARISLW 320 (323)
T ss_pred ceEEee
Confidence 566543
No 369
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=20.08 E-value=6.2e+02 Score=29.27 Aligned_cols=30 Identities=30% Similarity=0.136 Sum_probs=21.1
Q ss_pred CCcCcceEEEecCCCEEEEEeCCCCEEEEEEec
Q 018144 205 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 237 (360)
Q Consensus 205 ~l~~pngia~~~dg~~l~v~~t~~~~i~~~~~~ 237 (360)
+......|.+++| .|||+++- ++||.-++.
T Consensus 487 G~a~A~~VgLs~d--rLFvADse-GkLYsa~l~ 516 (1774)
T PF11725_consen 487 GKAQAQSVGLSND--RLFVADSE-GKLYSADLP 516 (1774)
T ss_pred CchhhhheeecCC--eEEEEeCC-CCEEecccc
Confidence 3445667888777 59999985 678876653
Done!