Query 018145
Match_columns 360
No_of_seqs 181 out of 2176
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:31:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 1.1E-44 2.3E-49 320.7 27.0 337 21-360 3-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 4.1E-39 8.8E-44 294.6 24.9 289 37-347 3-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 3.8E-39 8.3E-44 285.1 19.5 238 98-337 1-241 (241)
4 COG2226 UbiE Methylase involve 99.8 1.3E-18 2.7E-23 150.2 15.7 154 195-353 49-229 (238)
5 PF01209 Ubie_methyltran: ubiE 99.8 1.8E-19 3.9E-24 157.1 7.8 156 195-354 45-226 (233)
6 PLN02233 ubiquinone biosynthes 99.8 8.9E-18 1.9E-22 149.7 18.7 156 195-354 71-254 (261)
7 TIGR00740 methyltransferase, p 99.8 8.8E-19 1.9E-23 154.8 10.7 149 196-349 52-228 (239)
8 PTZ00098 phosphoethanolamine N 99.8 1.1E-17 2.4E-22 149.3 16.0 155 186-350 42-204 (263)
9 TIGR02752 MenG_heptapren 2-hep 99.8 4.6E-17 9.9E-22 143.2 17.0 168 187-360 36-231 (231)
10 KOG1540 Ubiquinone biosynthesi 99.7 6E-17 1.3E-21 137.1 16.2 169 170-345 73-278 (296)
11 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.6E-17 3.4E-22 147.2 12.5 151 196-347 55-229 (247)
12 PRK14103 trans-aconitate 2-met 99.7 8.3E-17 1.8E-21 143.5 15.4 156 186-345 19-181 (255)
13 PLN02244 tocopherol O-methyltr 99.7 2.7E-16 5.9E-21 145.5 17.1 151 196-350 117-280 (340)
14 COG4106 Tam Trans-aconitate me 99.7 1.5E-16 3.2E-21 131.5 10.4 173 184-360 18-203 (257)
15 PLN02490 MPBQ/MSBQ methyltrans 99.7 9.2E-16 2E-20 140.0 16.6 140 196-350 112-258 (340)
16 PRK00216 ubiE ubiquinone/menaq 99.7 3.8E-15 8.2E-20 131.5 19.2 168 187-360 42-238 (239)
17 PLN02336 phosphoethanolamine N 99.7 1.5E-15 3.3E-20 147.5 16.2 152 186-350 256-416 (475)
18 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 4.6E-15 1E-19 129.6 17.7 169 187-360 30-223 (223)
19 COG2230 Cfa Cyclopropane fatty 99.7 9.2E-16 2E-20 134.7 13.1 157 185-350 61-225 (283)
20 PF02353 CMAS: Mycolic acid cy 99.7 9.1E-16 2E-20 136.8 13.2 161 185-350 51-219 (273)
21 PRK11207 tellurite resistance 99.6 3.9E-15 8.5E-20 127.3 14.5 141 186-347 20-169 (197)
22 TIGR00452 methyltransferase, p 99.6 5.2E-15 1.1E-19 134.1 15.8 154 187-350 112-275 (314)
23 PRK15068 tRNA mo(5)U34 methylt 99.6 3.7E-15 7.9E-20 136.6 14.3 154 187-350 113-276 (322)
24 PF13489 Methyltransf_23: Meth 99.6 1.8E-15 3.9E-20 125.1 11.1 136 195-345 20-160 (161)
25 smart00828 PKS_MT Methyltransf 99.6 3.1E-15 6.7E-20 130.9 12.8 137 199-351 1-147 (224)
26 PF12847 Methyltransf_18: Meth 99.6 7.6E-16 1.6E-20 119.5 8.0 98 197-294 1-111 (112)
27 PRK11873 arsM arsenite S-adeno 99.6 1.1E-14 2.4E-19 131.2 15.5 145 195-348 75-230 (272)
28 PRK01683 trans-aconitate 2-met 99.6 1.1E-14 2.4E-19 130.2 15.4 153 185-343 20-182 (258)
29 PLN02396 hexaprenyldihydroxybe 99.6 1.9E-15 4.1E-20 137.6 9.7 144 197-348 131-289 (322)
30 PRK06922 hypothetical protein; 99.6 5.3E-15 1.1E-19 143.0 12.3 141 158-299 378-542 (677)
31 PRK08317 hypothetical protein; 99.6 2.5E-14 5.5E-19 126.2 15.5 155 188-348 11-176 (241)
32 PF13847 Methyltransf_31: Meth 99.6 2.3E-15 4.9E-20 123.5 6.8 137 196-340 2-152 (152)
33 PRK11036 putative S-adenosyl-L 99.6 1.7E-14 3.6E-19 128.7 12.3 158 187-350 36-209 (255)
34 TIGR00477 tehB tellurite resis 99.6 4.9E-14 1.1E-18 120.3 13.9 140 187-347 21-168 (195)
35 PF08241 Methyltransf_11: Meth 99.6 7.8E-15 1.7E-19 109.9 6.4 88 202-292 1-95 (95)
36 PRK06202 hypothetical protein; 99.6 2.1E-13 4.5E-18 119.9 16.5 143 196-349 59-223 (232)
37 PRK10258 biotin biosynthesis p 99.5 1.9E-13 4.1E-18 121.7 16.1 147 185-343 31-182 (251)
38 PF06080 DUF938: Protein of un 99.5 4E-13 8.6E-18 112.5 16.5 158 200-360 28-204 (204)
39 TIGR02021 BchM-ChlM magnesium 99.5 1.2E-13 2.5E-18 120.4 14.0 146 196-351 54-209 (219)
40 TIGR02072 BioC biotin biosynth 99.5 1.5E-13 3.2E-18 121.3 14.8 136 197-347 34-175 (240)
41 PRK05785 hypothetical protein; 99.5 2.8E-13 6.1E-18 118.2 16.2 153 197-360 51-224 (226)
42 smart00138 MeTrc Methyltransfe 99.5 1.5E-13 3.2E-18 122.6 14.5 100 196-295 98-243 (264)
43 PF08242 Methyltransf_12: Meth 99.5 3.9E-15 8.4E-20 112.9 3.2 87 202-290 1-99 (99)
44 TIGR03587 Pse_Me-ase pseudamin 99.5 1.9E-13 4.1E-18 117.2 11.9 103 195-299 41-147 (204)
45 PRK11705 cyclopropane fatty ac 99.5 2.2E-13 4.7E-18 127.7 13.1 154 186-350 157-314 (383)
46 PRK04266 fibrillarin; Provisio 99.5 1.7E-12 3.7E-17 112.7 17.6 143 191-359 67-224 (226)
47 PLN02336 phosphoethanolamine N 99.5 2.7E-13 5.9E-18 131.8 13.9 144 186-346 27-180 (475)
48 PRK12335 tellurite resistance 99.5 6E-13 1.3E-17 120.6 13.7 132 196-347 119-258 (287)
49 TIGR03438 probable methyltrans 99.5 4.3E-13 9.4E-18 122.2 11.8 104 186-292 55-175 (301)
50 PRK08287 cobalt-precorrin-6Y C 99.5 9.2E-13 2E-17 111.9 13.0 124 190-348 25-156 (187)
51 PRK07580 Mg-protoporphyrin IX 99.5 1.1E-12 2.3E-17 115.3 13.8 143 196-351 62-217 (230)
52 TIGR00537 hemK_rel_arch HemK-r 99.5 1.7E-12 3.8E-17 109.4 14.4 133 197-360 19-177 (179)
53 PF13649 Methyltransf_25: Meth 99.5 5.8E-14 1.3E-18 106.8 4.5 88 201-288 1-101 (101)
54 KOG2361 Predicted methyltransf 99.4 2.7E-13 5.9E-18 114.3 8.2 147 198-347 72-236 (264)
55 KOG4300 Predicted methyltransf 99.4 2.2E-12 4.8E-17 106.1 11.8 174 171-352 51-236 (252)
56 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.8E-13 3.8E-18 116.3 5.5 143 197-349 59-216 (243)
57 KOG1270 Methyltransferases [Co 99.4 3.9E-13 8.5E-18 114.9 7.3 142 198-349 90-250 (282)
58 PRK15001 SAM-dependent 23S rib 99.4 5.3E-12 1.1E-16 117.1 15.1 108 186-294 218-340 (378)
59 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.4E-11 3E-16 106.2 15.8 131 196-347 33-186 (213)
60 PRK00107 gidB 16S rRNA methylt 99.4 1.6E-11 3.4E-16 103.5 14.9 94 196-295 44-146 (187)
61 PF08003 Methyltransf_9: Prote 99.4 8.2E-12 1.8E-16 110.0 13.3 155 186-350 105-269 (315)
62 PLN03075 nicotianamine synthas 99.4 3.3E-12 7.2E-17 113.7 10.3 98 196-294 122-233 (296)
63 PF05401 NodS: Nodulation prot 99.4 1.3E-12 2.8E-17 108.1 6.8 136 191-350 38-181 (201)
64 PLN02585 magnesium protoporphy 99.4 8.2E-12 1.8E-16 113.5 12.8 141 197-351 144-302 (315)
65 TIGR00138 gidB 16S rRNA methyl 99.4 9.4E-12 2E-16 104.6 12.2 91 198-294 43-142 (181)
66 PRK05134 bifunctional 3-demeth 99.4 7.9E-12 1.7E-16 110.0 12.2 145 196-348 47-205 (233)
67 PRK09489 rsmC 16S ribosomal RN 99.4 2.5E-11 5.3E-16 112.0 15.9 108 187-295 187-304 (342)
68 PRK13255 thiopurine S-methyltr 99.3 8E-11 1.7E-15 101.9 15.0 132 196-348 36-190 (218)
69 PF03848 TehB: Tellurite resis 99.3 9.4E-12 2E-16 104.2 8.9 139 187-346 21-167 (192)
70 TIGR02469 CbiT precorrin-6Y C5 99.3 4.2E-11 9.1E-16 94.3 11.4 99 189-293 12-121 (124)
71 PTZ00146 fibrillarin; Provisio 99.3 1.5E-10 3.2E-15 102.9 15.7 132 195-350 130-273 (293)
72 TIGR01983 UbiG ubiquinone bios 99.3 2E-11 4.4E-16 106.7 9.5 142 197-348 45-203 (224)
73 PF05175 MTS: Methyltransferas 99.3 1.7E-11 3.7E-16 102.3 8.6 99 197-295 31-141 (170)
74 PRK00121 trmB tRNA (guanine-N( 99.3 1.4E-11 3.1E-16 105.7 8.1 99 197-295 40-157 (202)
75 TIGR03534 RF_mod_PrmC protein- 99.3 1.1E-10 2.3E-15 104.0 13.4 124 197-350 87-243 (251)
76 PF05148 Methyltransf_8: Hypot 99.2 9.9E-11 2.2E-15 97.6 11.9 160 160-360 31-197 (219)
77 COG2813 RsmC 16S RNA G1207 met 99.2 3.7E-10 8.1E-15 99.8 15.7 110 185-295 147-267 (300)
78 PF05891 Methyltransf_PK: AdoM 99.2 4E-11 8.8E-16 101.0 8.1 138 197-349 55-202 (218)
79 PRK14968 putative methyltransf 99.2 5.7E-10 1.2E-14 94.7 15.1 124 196-350 22-175 (188)
80 PLN02232 ubiquinone biosynthes 99.2 6.4E-11 1.4E-15 97.8 8.8 126 225-352 1-151 (160)
81 PRK09328 N5-glutamine S-adenos 99.2 6.9E-10 1.5E-14 100.2 15.6 135 195-359 106-274 (275)
82 PRK11188 rrmJ 23S rRNA methylt 99.2 4E-10 8.8E-15 97.0 13.2 105 187-295 41-166 (209)
83 TIGR00091 tRNA (guanine-N(7)-) 99.2 4.8E-11 1E-15 101.8 7.3 99 197-295 16-133 (194)
84 COG2242 CobL Precorrin-6B meth 99.2 4.4E-10 9.5E-15 92.4 12.5 101 189-296 27-137 (187)
85 PRK13944 protein-L-isoaspartat 99.2 1.6E-10 3.4E-15 99.5 10.3 99 187-294 63-173 (205)
86 PF12147 Methyltransf_20: Puta 99.2 1.4E-09 3.1E-14 94.9 16.1 155 196-360 134-311 (311)
87 PRK11088 rrmA 23S rRNA methylt 99.2 1.1E-10 2.3E-15 105.1 9.6 91 197-296 85-183 (272)
88 TIGR02081 metW methionine bios 99.2 4.8E-10 1E-14 95.7 12.7 142 197-350 13-169 (194)
89 PRK13942 protein-L-isoaspartat 99.1 3.1E-10 6.8E-15 98.1 10.7 100 186-294 66-176 (212)
90 PRK00517 prmA ribosomal protei 99.1 8.2E-10 1.8E-14 98.1 13.0 120 196-355 118-245 (250)
91 PRK00377 cbiT cobalt-precorrin 99.1 1E-09 2.2E-14 94.0 11.8 97 190-292 34-143 (198)
92 PF07021 MetW: Methionine bios 99.1 1E-09 2.2E-14 90.8 11.0 141 196-352 12-171 (193)
93 PRK14121 tRNA (guanine-N(7)-)- 99.1 5.7E-10 1.2E-14 103.2 10.6 107 187-295 113-236 (390)
94 TIGR00080 pimt protein-L-isoas 99.1 7E-10 1.5E-14 96.3 10.5 98 187-293 68-176 (215)
95 KOG3045 Predicted RNA methylas 99.1 2.4E-09 5.3E-14 91.3 13.2 158 160-360 139-303 (325)
96 PRK07402 precorrin-6B methylas 99.1 7.1E-10 1.5E-14 94.9 9.8 101 188-295 32-143 (196)
97 TIGR03533 L3_gln_methyl protei 99.1 5.6E-10 1.2E-14 100.8 9.3 96 197-292 121-249 (284)
98 PHA03411 putative methyltransf 99.1 1.8E-09 3.9E-14 94.9 12.0 122 198-342 65-208 (279)
99 TIGR00536 hemK_fam HemK family 99.1 1.4E-09 2.9E-14 98.5 11.4 94 199-292 116-242 (284)
100 PRK14966 unknown domain/N5-glu 99.1 5.2E-09 1.1E-13 97.5 15.2 132 197-358 251-416 (423)
101 COG4123 Predicted O-methyltran 99.0 3.1E-09 6.8E-14 92.1 12.4 101 195-295 42-171 (248)
102 PRK11805 N5-glutamine S-adenos 99.0 9.9E-10 2.1E-14 100.1 8.9 95 198-292 134-261 (307)
103 PRK04457 spermidine synthase; 99.0 7.9E-10 1.7E-14 98.6 7.9 98 196-294 65-177 (262)
104 TIGR00406 prmA ribosomal prote 99.0 5E-09 1.1E-13 94.9 12.9 94 196-295 158-260 (288)
105 TIGR00438 rrmJ cell division p 99.0 5.2E-09 1.1E-13 88.9 12.1 103 188-294 23-146 (188)
106 PRK14967 putative methyltransf 99.0 9.9E-09 2.1E-13 89.6 14.0 102 195-297 34-162 (223)
107 TIGR03704 PrmC_rel_meth putati 99.0 1.3E-08 2.9E-13 90.1 14.9 98 197-294 86-216 (251)
108 PRK13256 thiopurine S-methyltr 99.0 7E-09 1.5E-13 89.5 12.6 100 196-297 42-166 (226)
109 PF05724 TPMT: Thiopurine S-me 99.0 7.4E-09 1.6E-13 89.5 12.7 133 195-348 35-190 (218)
110 cd02440 AdoMet_MTases S-adenos 99.0 4.2E-09 9E-14 79.4 9.5 92 200-293 1-103 (107)
111 KOG1271 Methyltransferases [Ge 99.0 3.3E-09 7.1E-14 85.8 9.1 124 197-350 67-207 (227)
112 PRK01544 bifunctional N5-gluta 99.0 8.5E-09 1.8E-13 100.3 13.8 125 198-352 139-297 (506)
113 PF13659 Methyltransf_26: Meth 98.9 1E-09 2.2E-14 85.6 4.8 97 198-295 1-116 (117)
114 TIGR01177 conserved hypothetic 98.9 1.5E-08 3.3E-13 93.7 13.1 99 195-295 180-295 (329)
115 PRK00811 spermidine synthase; 98.9 4.5E-09 9.7E-14 94.9 9.0 98 196-293 75-190 (283)
116 PF01739 CheR: CheR methyltran 98.9 4.1E-09 9E-14 89.3 8.1 98 197-294 31-175 (196)
117 PRK10611 chemotaxis methyltran 98.9 1.8E-08 4E-13 90.2 12.6 98 197-294 115-262 (287)
118 KOG2899 Predicted methyltransf 98.9 5.6E-09 1.2E-13 88.4 8.6 143 195-345 56-254 (288)
119 PRK00312 pcm protein-L-isoaspa 98.9 1.1E-08 2.3E-13 88.7 10.4 98 187-295 69-176 (212)
120 COG2264 PrmA Ribosomal protein 98.9 2.4E-08 5.3E-13 88.9 12.7 126 187-349 154-289 (300)
121 COG4976 Predicted methyltransf 98.8 5.4E-09 1.2E-13 87.7 6.2 145 187-350 116-267 (287)
122 PLN02366 spermidine synthase 98.8 1.9E-08 4.2E-13 91.3 10.2 98 196-293 90-205 (308)
123 PF04672 Methyltransf_19: S-ad 98.8 3E-08 6.5E-13 86.7 10.8 141 197-345 68-233 (267)
124 PRK01581 speE spermidine synth 98.8 2.1E-08 4.5E-13 91.7 9.1 99 196-294 149-268 (374)
125 COG2518 Pcm Protein-L-isoaspar 98.8 5E-08 1.1E-12 82.1 10.0 98 187-295 63-170 (209)
126 PRK13943 protein-L-isoaspartat 98.8 3.3E-08 7.1E-13 90.3 9.2 99 187-294 71-180 (322)
127 PF06325 PrmA: Ribosomal prote 98.8 3.3E-08 7.2E-13 88.9 9.1 117 196-351 160-286 (295)
128 COG1352 CheR Methylase of chem 98.8 1.6E-07 3.5E-12 83.0 13.2 98 197-294 96-241 (268)
129 COG2890 HemK Methylase of poly 98.8 2.7E-07 5.8E-12 83.0 14.8 123 200-352 113-267 (280)
130 COG2519 GCD14 tRNA(1-methylade 98.8 5.3E-08 1.2E-12 83.8 9.7 106 185-298 83-199 (256)
131 TIGR00417 speE spermidine synt 98.8 2.7E-08 5.8E-13 89.4 8.2 98 196-293 71-185 (270)
132 PF05219 DREV: DREV methyltran 98.7 1.2E-07 2.7E-12 82.0 10.7 144 197-350 94-242 (265)
133 KOG3010 Methyltransferase [Gen 98.7 5.9E-08 1.3E-12 82.4 8.3 94 198-296 34-138 (261)
134 PF01135 PCMT: Protein-L-isoas 98.7 2.5E-08 5.5E-13 85.4 5.8 102 185-295 61-173 (209)
135 PF08100 Dimerisation: Dimeris 98.7 1.8E-08 3.8E-13 65.0 3.0 49 39-87 1-51 (51)
136 PLN02781 Probable caffeoyl-CoA 98.7 1.6E-07 3.5E-12 82.3 10.1 98 195-297 66-181 (234)
137 PRK03612 spermidine synthase; 98.7 9.3E-08 2E-12 93.6 9.3 98 196-294 296-415 (521)
138 smart00650 rADc Ribosomal RNA 98.7 9.4E-08 2E-12 79.7 7.9 103 186-294 3-113 (169)
139 PRK10901 16S rRNA methyltransf 98.6 1.8E-07 4E-12 89.5 10.8 109 188-297 236-375 (427)
140 TIGR00563 rsmB ribosomal RNA s 98.6 2.1E-07 4.5E-12 89.2 9.8 111 187-298 229-372 (426)
141 KOG1541 Predicted protein carb 98.6 1.4E-07 3E-12 79.0 6.5 96 197-294 50-160 (270)
142 PRK14902 16S rRNA methyltransf 98.6 3.3E-07 7.1E-12 88.3 10.2 107 190-297 244-382 (444)
143 PRK14904 16S rRNA methyltransf 98.6 3.6E-07 7.8E-12 88.0 10.4 104 195-298 248-381 (445)
144 PHA03412 putative methyltransf 98.6 3.7E-07 8E-12 78.7 9.2 92 198-289 50-158 (241)
145 PF08704 GCD14: tRNA methyltra 98.5 2E-07 4.4E-12 81.5 7.4 126 187-349 31-172 (247)
146 PF02390 Methyltransf_4: Putat 98.5 1.5E-07 3.2E-12 80.1 6.3 97 199-295 19-134 (195)
147 PLN02672 methionine S-methyltr 98.5 8.8E-07 1.9E-11 92.0 12.8 65 198-262 119-210 (1082)
148 PRK14901 16S rRNA methyltransf 98.5 4.6E-07 1E-11 87.0 10.0 108 189-297 245-387 (434)
149 COG3963 Phospholipid N-methylt 98.5 1.2E-06 2.6E-11 70.3 9.3 109 187-296 39-158 (194)
150 PF08123 DOT1: Histone methyla 98.5 4.4E-07 9.4E-12 77.5 7.1 110 187-300 33-164 (205)
151 PF03291 Pox_MCEL: mRNA cappin 98.5 6.5E-07 1.4E-11 82.2 8.7 98 197-295 62-187 (331)
152 TIGR00446 nop2p NOL1/NOP2/sun 98.4 9.8E-07 2.1E-11 79.0 9.3 103 195-297 69-202 (264)
153 PF11968 DUF3321: Putative met 98.4 3.3E-06 7.2E-11 71.3 11.6 120 198-350 52-183 (219)
154 PRK14903 16S rRNA methyltransf 98.4 1.8E-06 3.9E-11 82.6 10.2 104 195-298 235-370 (431)
155 PF10294 Methyltransf_16: Puta 98.4 7.9E-07 1.7E-11 74.3 6.8 101 195-297 43-159 (173)
156 COG0220 Predicted S-adenosylme 98.4 1.1E-06 2.4E-11 76.0 7.2 95 199-294 50-164 (227)
157 PF01596 Methyltransf_3: O-met 98.3 5.8E-07 1.3E-11 76.8 4.9 98 195-297 43-158 (205)
158 PLN02823 spermine synthase 98.3 1.6E-06 3.4E-11 79.7 7.9 97 196-293 102-219 (336)
159 COG0421 SpeE Spermidine syntha 98.3 2.6E-06 5.7E-11 76.1 9.1 97 196-293 75-189 (282)
160 KOG1500 Protein arginine N-met 98.3 2.6E-06 5.6E-11 75.7 8.8 104 187-292 168-280 (517)
161 PLN02476 O-methyltransferase 98.3 1.7E-06 3.7E-11 77.0 7.7 99 195-298 116-232 (278)
162 COG4122 Predicted O-methyltran 98.3 1.7E-06 3.6E-11 74.1 7.3 100 195-299 57-171 (219)
163 PF05185 PRMT5: PRMT5 arginine 98.3 1.1E-06 2.5E-11 83.8 6.4 127 158-291 151-294 (448)
164 PRK11727 23S rRNA mA1618 methy 98.3 3.7E-06 8.1E-11 76.6 9.3 145 197-350 114-294 (321)
165 PRK04148 hypothetical protein; 98.3 7.7E-06 1.7E-10 64.3 9.6 98 187-295 7-110 (134)
166 TIGR03439 methyl_EasF probable 98.3 3.9E-06 8.5E-11 76.4 9.2 104 186-292 68-195 (319)
167 TIGR00755 ksgA dimethyladenosi 98.3 3.2E-06 6.9E-11 75.3 8.5 82 186-270 19-108 (253)
168 KOG1331 Predicted methyltransf 98.3 2.2E-06 4.7E-11 75.0 6.7 96 197-296 45-145 (293)
169 PF09243 Rsm22: Mitochondrial 98.2 4.7E-06 1E-10 74.9 8.4 111 186-299 23-144 (274)
170 PRK14896 ksgA 16S ribosomal RN 98.2 6.5E-06 1.4E-10 73.4 9.1 79 185-266 18-102 (258)
171 PRK00536 speE spermidine synth 98.2 6E-06 1.3E-10 73.0 8.7 89 196-294 71-171 (262)
172 PRK00274 ksgA 16S ribosomal RN 98.2 5.8E-06 1.2E-10 74.4 8.0 74 186-262 32-112 (272)
173 PF03141 Methyltransf_29: Puta 98.2 2.8E-06 6.1E-11 80.0 6.0 99 196-298 116-223 (506)
174 PRK10909 rsmD 16S rRNA m(2)G96 98.2 6.4E-06 1.4E-10 70.1 7.7 94 197-294 53-159 (199)
175 KOG2904 Predicted methyltransf 98.2 2E-05 4.2E-10 68.5 10.3 100 196-295 147-286 (328)
176 PRK13168 rumA 23S rRNA m(5)U19 98.2 5.3E-06 1.1E-10 79.9 7.7 101 185-294 286-400 (443)
177 KOG1975 mRNA cap methyltransfe 98.1 9.2E-06 2E-10 72.0 7.9 98 196-294 116-237 (389)
178 KOG2940 Predicted methyltransf 98.1 2E-05 4.3E-10 66.6 9.4 141 197-347 72-226 (325)
179 KOG1661 Protein-L-isoaspartate 98.1 8.4E-06 1.8E-10 68.0 6.7 90 195-292 80-191 (237)
180 PLN02589 caffeoyl-CoA O-methyl 98.1 7.2E-06 1.6E-10 72.1 6.5 98 195-297 77-193 (247)
181 PF01564 Spermine_synth: Sperm 98.1 4.3E-06 9.3E-11 73.8 5.0 100 196-295 75-192 (246)
182 TIGR00478 tly hemolysin TlyA f 98.1 6.2E-05 1.3E-09 65.4 12.1 137 186-350 64-219 (228)
183 PTZ00338 dimethyladenosine tra 98.1 1.5E-05 3.2E-10 72.2 8.4 88 186-277 26-122 (294)
184 PRK11783 rlmL 23S rRNA m(2)G24 98.1 8.9E-06 1.9E-10 82.6 7.7 96 197-293 538-655 (702)
185 KOG3191 Predicted N6-DNA-methy 98.0 0.00012 2.5E-09 59.9 11.9 133 198-359 44-207 (209)
186 PRK15128 23S rRNA m(5)C1962 me 98.0 2.4E-05 5.3E-10 73.8 8.2 98 196-294 219-339 (396)
187 KOG1499 Protein arginine N-met 97.9 1.5E-05 3.2E-10 71.9 5.4 95 196-291 59-164 (346)
188 PRK03522 rumB 23S rRNA methylu 97.9 2.1E-05 4.6E-10 72.3 6.5 64 197-262 173-247 (315)
189 PRK01544 bifunctional N5-gluta 97.9 2.6E-05 5.7E-10 76.1 7.2 97 197-294 347-462 (506)
190 COG0030 KsgA Dimethyladenosine 97.7 0.00018 4E-09 63.2 8.8 90 185-277 19-116 (259)
191 TIGR00479 rumA 23S rRNA (uraci 97.7 4.8E-05 1E-09 73.2 5.4 90 195-292 290-394 (431)
192 COG2263 Predicted RNA methylas 97.7 0.00012 2.5E-09 60.5 6.6 66 196-262 44-115 (198)
193 COG2521 Predicted archaeal met 97.7 0.00045 9.8E-09 58.8 10.2 131 195-350 132-279 (287)
194 PF07942 N2227: N2227-like pro 97.7 0.0013 2.9E-08 58.3 13.7 137 196-348 55-242 (270)
195 PRK00050 16S rRNA m(4)C1402 me 97.7 8.3E-05 1.8E-09 67.0 6.3 77 184-261 7-96 (296)
196 COG0293 FtsJ 23S rRNA methylas 97.7 0.00049 1.1E-08 58.1 10.3 110 184-297 32-162 (205)
197 PF04816 DUF633: Family of unk 97.7 0.00021 4.5E-09 61.1 8.0 123 201-358 1-137 (205)
198 PF02527 GidB: rRNA small subu 97.7 7.5E-05 1.6E-09 62.7 5.2 89 200-294 51-148 (184)
199 PF01728 FtsJ: FtsJ-like methy 97.6 8.8E-05 1.9E-09 62.4 5.5 108 185-296 9-141 (181)
200 TIGR00095 RNA methyltransferas 97.6 0.0002 4.4E-09 60.6 7.3 94 197-295 49-159 (189)
201 COG4798 Predicted methyltransf 97.6 0.0009 2E-08 55.3 10.3 140 194-348 45-205 (238)
202 PLN02668 indole-3-acetate carb 97.6 0.0041 8.9E-08 58.1 16.0 149 197-347 63-308 (386)
203 TIGR02085 meth_trns_rumB 23S r 97.6 0.0002 4.4E-09 67.4 7.6 91 197-294 233-334 (374)
204 KOG0820 Ribosomal RNA adenine 97.6 0.00017 3.6E-09 62.8 6.2 76 185-262 47-130 (315)
205 COG5459 Predicted rRNA methyla 97.4 0.00012 2.6E-09 65.8 3.5 102 197-298 113-229 (484)
206 PRK04338 N(2),N(2)-dimethylgua 97.4 0.00038 8.2E-09 65.5 6.8 90 198-293 58-157 (382)
207 COG4076 Predicted RNA methylas 97.4 0.00039 8.6E-09 57.1 5.9 97 199-297 34-138 (252)
208 KOG3987 Uncharacterized conser 97.4 0.00012 2.5E-09 61.0 2.6 140 197-350 112-262 (288)
209 TIGR00027 mthyl_TIGR00027 meth 97.3 0.0044 9.5E-08 55.2 12.7 148 196-346 80-248 (260)
210 KOG3115 Methyltransferase-like 97.3 0.0003 6.5E-09 58.5 4.7 100 198-297 61-186 (249)
211 COG4262 Predicted spermidine s 97.3 0.00082 1.8E-08 60.9 7.8 95 195-295 287-408 (508)
212 COG0357 GidB Predicted S-adeno 97.3 0.00057 1.2E-08 58.5 5.9 89 198-292 68-166 (215)
213 PF13679 Methyltransf_32: Meth 97.2 0.0013 2.8E-08 52.9 7.4 96 195-297 23-134 (141)
214 KOG1709 Guanidinoacetate methy 97.2 0.0027 5.9E-08 53.5 9.2 100 196-297 100-209 (271)
215 smart00550 Zalpha Z-DNA-bindin 97.2 0.00075 1.6E-08 46.8 4.9 59 44-107 6-66 (68)
216 COG0500 SmtA SAM-dependent met 97.2 0.0028 6.2E-08 51.2 9.3 95 201-299 52-160 (257)
217 KOG3201 Uncharacterized conser 97.2 0.00017 3.7E-09 57.7 1.7 98 198-297 30-143 (201)
218 PF03492 Methyltransf_7: SAM d 97.2 0.0068 1.5E-07 56.1 12.2 151 195-346 14-251 (334)
219 PRK11760 putative 23S rRNA C24 97.1 0.0025 5.4E-08 58.1 8.8 95 196-298 210-308 (357)
220 TIGR02143 trmA_only tRNA (urac 97.1 0.00033 7.2E-09 65.4 3.1 51 199-251 199-256 (353)
221 PF01269 Fibrillarin: Fibrilla 97.1 0.0068 1.5E-07 51.7 10.5 133 195-351 71-215 (229)
222 PF02475 Met_10: Met-10+ like- 97.1 0.00033 7.2E-09 59.5 2.7 90 196-291 100-199 (200)
223 COG1889 NOP1 Fibrillarin-like 97.1 0.026 5.6E-07 47.3 13.4 133 195-351 74-217 (231)
224 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0024 5.3E-08 57.1 8.1 96 185-286 19-123 (262)
225 PRK11933 yebU rRNA (cytosine-C 97.1 0.0034 7.4E-08 60.5 9.5 103 195-297 111-245 (470)
226 COG2384 Predicted SAM-dependen 97.1 0.012 2.6E-07 50.1 11.4 118 198-350 17-145 (226)
227 KOG1269 SAM-dependent methyltr 97.0 0.00077 1.7E-08 62.6 4.5 103 195-300 108-221 (364)
228 smart00346 HTH_ICLR helix_turn 97.0 0.0011 2.4E-08 48.8 4.6 58 46-109 7-65 (91)
229 KOG2798 Putative trehalase [Ca 97.0 0.017 3.7E-07 51.6 12.1 138 197-349 150-338 (369)
230 PF01170 UPF0020: Putative RNA 96.9 0.0033 7.1E-08 52.8 6.8 96 195-290 26-147 (179)
231 PF09339 HTH_IclR: IclR helix- 96.8 0.00066 1.4E-08 44.3 1.9 44 47-94 6-50 (52)
232 COG1189 Predicted rRNA methyla 96.8 0.019 4.2E-07 49.4 11.0 149 187-350 69-226 (245)
233 COG4301 Uncharacterized conser 96.8 0.0048 1E-07 53.1 7.2 98 196-293 77-192 (321)
234 COG3315 O-Methyltransferase in 96.8 0.0058 1.3E-07 55.4 8.3 158 186-347 83-263 (297)
235 PF01978 TrmB: Sugar-specific 96.8 0.00072 1.6E-08 46.9 2.0 56 45-105 9-64 (68)
236 KOG4589 Cell division protein 96.8 0.0089 1.9E-07 49.3 8.4 107 187-297 59-187 (232)
237 KOG3420 Predicted RNA methylas 96.8 0.0014 3E-08 51.6 3.5 67 197-265 48-124 (185)
238 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.7 0.002 4.3E-08 56.8 4.6 92 243-348 137-239 (256)
239 KOG2915 tRNA(1-methyladenosine 96.7 0.0084 1.8E-07 52.4 8.0 105 185-297 94-213 (314)
240 PF03059 NAS: Nicotianamine sy 96.7 0.0055 1.2E-07 54.6 7.0 96 197-293 120-229 (276)
241 COG3897 Predicted methyltransf 96.7 0.015 3.3E-07 48.4 8.9 102 195-299 77-184 (218)
242 COG4627 Uncharacterized protei 96.6 0.0014 3.1E-08 52.1 2.5 39 257-295 49-87 (185)
243 PF13412 HTH_24: Winged helix- 96.6 0.003 6.5E-08 40.4 3.4 45 45-93 4-48 (48)
244 PF13463 HTH_27: Winged helix 96.5 0.0036 7.8E-08 43.2 3.6 58 48-109 7-68 (68)
245 PF12840 HTH_20: Helix-turn-he 96.4 0.0035 7.6E-08 42.4 3.1 53 39-95 5-57 (61)
246 PRK15090 DNA-binding transcrip 96.4 0.0048 1E-07 55.0 4.7 58 47-110 17-74 (257)
247 TIGR01444 fkbM_fam methyltrans 96.4 0.0037 8.1E-08 50.2 3.7 52 200-251 1-59 (143)
248 PF02384 N6_Mtase: N-6 DNA Met 96.3 0.0078 1.7E-07 55.2 6.1 101 195-295 44-184 (311)
249 PF01022 HTH_5: Bacterial regu 96.3 0.0029 6.4E-08 40.2 2.3 43 46-93 4-46 (47)
250 PRK05031 tRNA (uracil-5-)-meth 96.3 0.003 6.5E-08 59.2 3.1 51 199-251 208-265 (362)
251 PF13578 Methyltransf_24: Meth 96.3 0.0018 3.9E-08 49.2 1.3 90 202-294 1-105 (106)
252 PF09445 Methyltransf_15: RNA 96.3 0.0013 2.7E-08 53.9 0.4 62 200-262 2-76 (163)
253 COG1414 IclR Transcriptional r 96.3 0.0058 1.3E-07 54.0 4.6 59 46-110 6-65 (246)
254 TIGR02337 HpaR homoprotocatech 96.2 0.01 2.2E-07 46.1 5.4 68 44-115 28-98 (118)
255 PF13601 HTH_34: Winged helix 96.2 0.0039 8.5E-08 44.7 2.8 65 45-113 1-69 (80)
256 KOG1663 O-methyltransferase [S 96.2 0.016 3.5E-07 49.5 6.9 100 195-299 71-188 (237)
257 PRK11512 DNA-binding transcrip 96.2 0.036 7.7E-07 44.6 8.4 65 46-114 42-109 (144)
258 PHA00738 putative HTH transcri 96.1 0.0094 2E-07 44.5 4.3 62 45-110 13-74 (108)
259 TIGR02987 met_A_Alw26 type II 96.1 0.019 4E-07 56.8 7.9 65 197-261 31-118 (524)
260 PF14947 HTH_45: Winged helix- 96.1 0.0043 9.4E-08 44.1 2.5 57 49-114 11-67 (77)
261 PF02082 Rrf2: Transcriptional 96.1 0.011 2.4E-07 42.7 4.7 48 58-110 25-72 (83)
262 PRK10141 DNA-binding transcrip 96.1 0.01 2.2E-07 45.7 4.7 68 37-108 9-76 (117)
263 PRK11783 rlmL 23S rRNA m(2)G24 96.1 0.041 8.9E-07 56.3 10.2 111 184-295 177-348 (702)
264 PF07091 FmrO: Ribosomal RNA m 96.0 0.014 3E-07 50.9 5.6 100 196-297 104-211 (251)
265 PRK11569 transcriptional repre 96.0 0.0099 2.1E-07 53.5 4.8 57 47-109 31-88 (274)
266 KOG2918 Carboxymethyl transfer 96.0 0.19 4.1E-06 45.1 12.5 144 196-349 86-278 (335)
267 PRK10163 DNA-binding transcrip 96.0 0.011 2.3E-07 53.2 4.9 57 47-109 28-85 (271)
268 KOG0822 Protein kinase inhibit 96.0 0.032 6.9E-07 53.3 8.0 127 158-292 333-476 (649)
269 PF11312 DUF3115: Protein of u 95.9 0.011 2.3E-07 53.2 4.6 99 198-296 87-244 (315)
270 PRK10857 DNA-binding transcrip 95.9 0.015 3.2E-07 47.9 5.1 63 39-109 9-71 (164)
271 cd00092 HTH_CRP helix_turn_hel 95.8 0.03 6.5E-07 38.3 5.7 44 57-107 24-67 (67)
272 COG3355 Predicted transcriptio 95.8 0.015 3.2E-07 45.0 4.4 46 46-95 29-75 (126)
273 COG1041 Predicted DNA modifica 95.8 0.11 2.4E-06 47.6 10.6 99 195-295 195-311 (347)
274 PF09012 FeoC: FeoC like trans 95.8 0.0083 1.8E-07 41.7 2.7 43 49-95 5-47 (69)
275 PRK03902 manganese transport t 95.8 0.019 4.2E-07 46.1 5.1 55 52-113 16-70 (142)
276 PRK09834 DNA-binding transcrip 95.8 0.015 3.2E-07 52.1 4.9 61 46-112 13-74 (263)
277 TIGR00006 S-adenosyl-methyltra 95.8 0.024 5.2E-07 51.4 6.2 66 185-251 9-80 (305)
278 TIGR02431 pcaR_pcaU beta-ketoa 95.7 0.014 3E-07 51.8 4.4 57 46-110 11-68 (248)
279 PF04989 CmcI: Cephalosporin h 95.7 0.044 9.6E-07 46.5 7.1 98 197-297 32-150 (206)
280 PRK11050 manganese transport r 95.7 0.075 1.6E-06 43.2 8.2 58 49-113 42-99 (152)
281 TIGR02010 IscR iron-sulfur clu 95.7 0.022 4.7E-07 45.4 5.0 48 57-109 24-71 (135)
282 PF04703 FaeA: FaeA-like prote 95.6 0.018 3.9E-07 38.8 3.8 44 48-95 4-48 (62)
283 TIGR00308 TRM1 tRNA(guanine-26 95.6 0.044 9.6E-07 51.4 7.6 91 198-294 45-147 (374)
284 smart00347 HTH_MARR helix_turn 95.6 0.027 5.9E-07 41.9 5.1 65 46-114 12-79 (101)
285 PF12802 MarR_2: MarR family; 95.6 0.014 3E-07 39.4 3.1 47 46-96 7-55 (62)
286 smart00419 HTH_CRP helix_turn_ 95.5 0.021 4.6E-07 36.1 3.5 40 58-105 8-47 (48)
287 PF10007 DUF2250: Uncharacteri 95.4 0.034 7.3E-07 40.7 4.6 47 45-95 8-54 (92)
288 PF01795 Methyltransf_5: MraW 95.3 0.029 6.3E-07 50.9 5.0 67 184-251 8-80 (310)
289 COG2520 Predicted methyltransf 95.3 0.043 9.3E-07 50.4 6.1 96 197-299 188-294 (341)
290 COG2345 Predicted transcriptio 95.3 0.029 6.2E-07 48.0 4.6 60 48-111 15-79 (218)
291 PF01047 MarR: MarR family; I 95.3 0.013 2.7E-07 39.2 2.0 47 46-96 5-51 (59)
292 KOG4058 Uncharacterized conser 95.3 0.065 1.4E-06 42.5 6.2 105 186-298 62-176 (199)
293 COG1092 Predicted SAM-dependen 95.2 0.046 1E-06 51.4 6.3 99 197-296 217-338 (393)
294 TIGR02702 SufR_cyano iron-sulf 95.2 0.031 6.7E-07 47.9 4.8 64 47-114 4-72 (203)
295 PF03602 Cons_hypoth95: Conser 95.2 0.013 2.8E-07 49.3 2.4 96 197-297 42-155 (183)
296 PF07757 AdoMet_MTase: Predict 95.2 0.025 5.4E-07 42.4 3.5 31 196-228 57-87 (112)
297 smart00418 HTH_ARSR helix_turn 95.1 0.045 9.7E-07 36.8 4.6 54 49-107 2-55 (66)
298 cd00090 HTH_ARSR Arsenical Res 95.1 0.041 9E-07 38.3 4.4 57 46-107 9-65 (78)
299 KOG2352 Predicted spermine/spe 95.0 0.11 2.4E-06 49.5 8.1 97 199-296 50-163 (482)
300 TIGR00738 rrf2_super rrf2 fami 95.0 0.04 8.8E-07 43.5 4.6 49 57-110 24-72 (132)
301 PF04072 LCM: Leucine carboxyl 94.9 0.1 2.2E-06 43.9 7.2 84 197-280 78-182 (183)
302 TIGR01884 cas_HTH CRISPR locus 94.9 0.045 9.8E-07 46.9 4.9 60 45-109 144-203 (203)
303 KOG2793 Putative N2,N2-dimethy 94.8 0.15 3.2E-06 44.7 7.9 99 197-298 86-203 (248)
304 PRK06266 transcription initiat 94.8 0.064 1.4E-06 44.8 5.4 44 47-94 25-68 (178)
305 PRK11920 rirA iron-responsive 94.7 0.07 1.5E-06 43.4 5.4 62 39-109 9-70 (153)
306 KOG2730 Methylase [General fun 94.7 0.037 8E-07 47.0 3.6 92 197-289 94-197 (263)
307 PF08220 HTH_DeoR: DeoR-like h 94.7 0.058 1.3E-06 35.8 3.9 44 48-95 4-47 (57)
308 COG1321 TroR Mn-dependent tran 94.6 0.066 1.4E-06 43.5 5.0 56 52-114 18-73 (154)
309 PF03141 Methyltransf_29: Puta 94.6 0.057 1.2E-06 51.6 5.2 98 195-295 363-468 (506)
310 PRK14165 winged helix-turn-hel 94.6 0.063 1.4E-06 46.2 5.0 62 49-114 12-73 (217)
311 KOG1562 Spermidine synthase [A 94.6 0.082 1.8E-06 47.0 5.7 102 195-297 119-239 (337)
312 PF01638 HxlR: HxlR-like helix 94.6 0.042 9.2E-07 40.3 3.5 61 49-114 10-74 (90)
313 PF08461 HTH_12: Ribonuclease 94.5 0.063 1.4E-06 36.8 3.9 59 49-111 3-64 (66)
314 TIGR01889 Staph_reg_Sar staphy 94.5 0.075 1.6E-06 40.5 4.7 66 44-113 25-97 (109)
315 COG4742 Predicted transcriptio 94.5 0.061 1.3E-06 47.3 4.7 67 40-115 9-75 (260)
316 PF06859 Bin3: Bicoid-interact 94.3 0.018 3.8E-07 43.4 0.8 85 257-350 3-94 (110)
317 smart00420 HTH_DEOR helix_turn 94.2 0.087 1.9E-06 33.8 4.1 42 49-94 5-46 (53)
318 COG4189 Predicted transcriptio 94.2 0.081 1.7E-06 45.1 4.7 55 37-95 16-70 (308)
319 PF04967 HTH_10: HTH DNA bindi 94.2 0.059 1.3E-06 35.0 3.1 41 38-85 6-46 (53)
320 COG1959 Predicted transcriptio 94.2 0.061 1.3E-06 43.6 3.9 48 58-110 25-72 (150)
321 PRK11014 transcriptional repre 94.1 0.084 1.8E-06 42.3 4.5 61 39-107 9-69 (141)
322 TIGR02944 suf_reg_Xantho FeS a 94.0 0.089 1.9E-06 41.5 4.5 46 57-107 24-69 (130)
323 PHA02943 hypothetical protein; 94.0 0.098 2.1E-06 41.5 4.4 56 47-107 14-69 (165)
324 PRK03573 transcriptional regul 93.8 0.51 1.1E-05 37.8 8.7 62 49-114 36-101 (144)
325 KOG3924 Putative protein methy 93.8 0.14 3E-06 47.4 5.8 107 188-298 184-312 (419)
326 PF01726 LexA_DNA_bind: LexA D 93.7 0.081 1.8E-06 36.1 3.2 35 58-95 25-59 (65)
327 PF07381 DUF1495: Winged helix 93.6 0.21 4.6E-06 36.4 5.3 68 42-113 7-87 (90)
328 PF10672 Methyltrans_SAM: S-ad 93.5 0.055 1.2E-06 48.7 2.7 98 197-295 123-239 (286)
329 COG4190 Predicted transcriptio 93.5 0.13 2.8E-06 39.8 4.2 51 41-95 61-111 (144)
330 smart00344 HTH_ASNC helix_turn 93.3 0.11 2.5E-06 39.3 3.8 46 45-94 4-49 (108)
331 PRK15431 ferrous iron transpor 93.1 0.15 3.3E-06 35.8 3.8 43 49-95 7-49 (78)
332 TIGR00373 conserved hypothetic 93.1 0.12 2.6E-06 42.3 3.7 44 47-94 17-60 (158)
333 COG0116 Predicted N6-adenine-s 93.0 0.84 1.8E-05 42.6 9.6 108 185-294 180-344 (381)
334 COG2265 TrmA SAM-dependent met 93.0 0.092 2E-06 50.3 3.6 99 186-293 283-395 (432)
335 PF01861 DUF43: Protein of unk 92.8 2.6 5.7E-05 36.7 11.8 92 197-292 44-146 (243)
336 TIGR00122 birA_repr_reg BirA b 92.8 0.19 4.2E-06 34.7 4.0 53 46-106 2-54 (69)
337 COG0742 N6-adenine-specific me 92.8 0.42 9.1E-06 40.0 6.6 97 197-294 43-154 (187)
338 KOG1099 SAM-dependent methyltr 92.8 0.37 8E-06 41.4 6.3 94 195-292 39-161 (294)
339 PRK04172 pheS phenylalanyl-tRN 92.7 0.12 2.7E-06 50.5 4.0 69 45-118 7-75 (489)
340 COG0275 Predicted S-adenosylme 92.6 0.29 6.2E-06 43.9 5.7 67 184-251 11-84 (314)
341 PF11899 DUF3419: Protein of u 92.6 0.18 3.9E-06 47.4 4.7 60 240-299 275-339 (380)
342 smart00529 HTH_DTXR Helix-turn 92.5 0.2 4.3E-06 37.0 4.1 46 61-113 2-47 (96)
343 PF08279 HTH_11: HTH domain; 92.5 0.19 4E-06 32.9 3.5 39 48-90 4-43 (55)
344 COG0144 Sun tRNA and rRNA cyto 92.5 1.3 2.8E-05 41.4 10.4 104 195-298 154-292 (355)
345 smart00345 HTH_GNTR helix_turn 92.5 0.21 4.6E-06 32.9 3.8 33 58-94 19-52 (60)
346 COG3432 Predicted transcriptio 92.3 0.089 1.9E-06 38.6 1.8 62 50-115 21-84 (95)
347 PLN02853 Probable phenylalanyl 92.3 0.15 3.3E-06 49.0 3.9 71 44-119 3-74 (492)
348 PF00325 Crp: Bacterial regula 92.3 0.12 2.7E-06 29.6 2.0 31 58-92 2-32 (32)
349 COG1733 Predicted transcriptio 92.2 0.43 9.3E-06 37.0 5.6 78 22-113 10-91 (120)
350 PF05958 tRNA_U5-meth_tr: tRNA 92.1 0.082 1.8E-06 49.4 1.8 62 184-249 185-253 (352)
351 PRK10870 transcriptional repre 92.0 2 4.2E-05 35.9 9.9 65 46-114 57-126 (176)
352 cd07377 WHTH_GntR Winged helix 92.0 0.48 1E-05 31.9 5.2 32 59-94 26-57 (66)
353 COG1064 AdhP Zn-dependent alco 91.8 0.78 1.7E-05 42.3 7.8 92 195-296 164-261 (339)
354 PF01325 Fe_dep_repress: Iron 91.8 0.24 5.1E-06 33.2 3.4 37 55-95 19-55 (60)
355 PF10354 DUF2431: Domain of un 91.8 3.3 7.1E-05 34.2 10.8 121 203-350 2-154 (166)
356 COG1846 MarR Transcriptional r 91.5 0.34 7.3E-06 37.3 4.6 70 42-115 20-92 (126)
357 PF03514 GRAS: GRAS domain fam 91.4 1.1 2.4E-05 42.3 8.6 109 186-297 100-246 (374)
358 PRK13777 transcriptional regul 91.4 0.45 9.7E-06 40.0 5.3 65 46-114 47-114 (185)
359 COG1255 Uncharacterized protei 91.3 2.9 6.2E-05 31.9 8.8 86 196-293 12-101 (129)
360 COG1378 Predicted transcriptio 91.1 0.41 8.9E-06 42.2 5.1 60 46-110 18-77 (247)
361 TIGR01610 phage_O_Nterm phage 91.1 0.49 1.1E-05 35.0 4.8 44 57-106 46-89 (95)
362 PF07789 DUF1627: Protein of u 90.6 0.4 8.7E-06 37.9 4.0 48 55-106 3-50 (155)
363 cd07153 Fur_like Ferric uptake 90.6 0.57 1.2E-05 35.9 5.0 61 46-106 3-66 (116)
364 cd08283 FDH_like_1 Glutathione 90.5 1.9 4.2E-05 40.7 9.5 99 195-295 182-307 (386)
365 PTZ00326 phenylalanyl-tRNA syn 90.3 0.34 7.5E-06 46.8 4.2 71 44-119 6-77 (494)
366 PF03444 HrcA_DNA-bdg: Winged 89.8 0.79 1.7E-05 32.3 4.5 52 57-113 22-73 (78)
367 PRK01747 mnmC bifunctional tRN 89.6 0.82 1.8E-05 46.7 6.5 97 196-292 56-204 (662)
368 COG1568 Predicted methyltransf 89.4 1.8 3.9E-05 38.4 7.4 216 49-294 27-260 (354)
369 PRK11169 leucine-responsive tr 89.4 0.45 9.7E-06 39.2 3.7 47 44-94 14-60 (164)
370 PF03686 UPF0146: Uncharacteri 89.4 1 2.2E-05 35.0 5.3 86 197-295 13-103 (127)
371 PRK11179 DNA-binding transcrip 89.3 0.5 1.1E-05 38.4 3.9 46 45-94 10-55 (153)
372 PF02002 TFIIE_alpha: TFIIE al 89.2 0.24 5.1E-06 37.5 1.7 42 49-94 18-59 (105)
373 PF14394 DUF4423: Domain of un 89.1 0.87 1.9E-05 37.8 5.2 63 35-111 23-87 (171)
374 PF06163 DUF977: Bacterial pro 89.0 0.9 1.9E-05 35.0 4.7 50 42-95 10-59 (127)
375 PF02153 PDH: Prephenate dehyd 88.5 0.67 1.5E-05 41.3 4.5 75 211-291 1-76 (258)
376 COG1522 Lrp Transcriptional re 88.1 0.71 1.5E-05 37.4 4.0 47 45-95 9-55 (154)
377 COG1063 Tdh Threonine dehydrog 88.1 3.5 7.5E-05 38.5 9.1 94 198-299 169-274 (350)
378 PRK06474 hypothetical protein; 88.0 0.79 1.7E-05 38.3 4.3 69 39-111 6-81 (178)
379 KOG2187 tRNA uracil-5-methyltr 87.5 0.67 1.4E-05 44.6 3.9 55 195-251 381-442 (534)
380 PF06962 rRNA_methylase: Putat 86.9 0.7 1.5E-05 36.8 3.2 75 223-297 1-95 (140)
381 PRK05638 threonine synthase; V 86.7 1.1 2.4E-05 43.3 5.1 64 46-114 373-439 (442)
382 COG1565 Uncharacterized conser 86.4 1.2 2.5E-05 41.2 4.7 64 166-234 51-123 (370)
383 PF13404 HTH_AsnC-type: AsnC-t 86.4 0.98 2.1E-05 27.8 3.0 36 45-84 4-39 (42)
384 TIGR02787 codY_Gpos GTP-sensin 86.4 4.7 0.0001 35.1 8.0 62 27-94 168-230 (251)
385 COG0287 TyrA Prephenate dehydr 86.2 3.8 8.2E-05 36.9 7.9 87 199-290 4-94 (279)
386 PRK04214 rbn ribonuclease BN/u 86.2 1.1 2.4E-05 42.9 4.7 43 57-106 309-351 (412)
387 PRK10742 putative methyltransf 86.0 1.3 2.9E-05 38.8 4.7 44 187-233 77-123 (250)
388 PRK13509 transcriptional repre 85.7 1 2.2E-05 39.9 4.0 46 46-95 7-52 (251)
389 PF08221 HTH_9: RNA polymerase 85.6 0.83 1.8E-05 30.8 2.6 42 49-94 18-59 (62)
390 PRK07502 cyclohexadienyl dehyd 85.5 4 8.6E-05 37.3 7.9 90 198-292 6-98 (307)
391 PF13545 HTH_Crp_2: Crp-like h 85.1 0.83 1.8E-05 31.9 2.6 58 39-106 6-68 (76)
392 COG5379 BtaA S-adenosylmethion 85.0 1.4 3E-05 39.4 4.2 69 230-298 296-370 (414)
393 PF05971 Methyltransf_10: Prot 84.2 1.3 2.9E-05 40.0 4.0 71 198-268 103-190 (299)
394 PRK09424 pntA NAD(P) transhydr 84.1 8.7 0.00019 37.8 9.8 95 196-295 163-286 (509)
395 PF05430 Methyltransf_30: S-ad 84.1 1.6 3.5E-05 34.1 3.9 54 274-360 70-123 (124)
396 PF07109 Mg-por_mtran_C: Magne 83.9 7.9 0.00017 28.6 7.2 84 264-359 4-96 (97)
397 PF12324 HTH_15: Helix-turn-he 83.9 1 2.2E-05 31.7 2.4 34 49-86 29-62 (77)
398 TIGR00498 lexA SOS regulatory 83.9 1.7 3.8E-05 36.9 4.5 45 46-94 8-58 (199)
399 COG3510 CmcI Cephalosporin hyd 83.6 10 0.00022 31.9 8.5 103 197-301 69-187 (237)
400 PF05584 Sulfolobus_pRN: Sulfo 83.4 2.3 5.1E-05 29.4 4.0 43 48-95 9-51 (72)
401 cd01842 SGNH_hydrolase_like_5 83.4 2.3 5E-05 35.2 4.7 41 257-297 52-102 (183)
402 PF00392 GntR: Bacterial regul 83.4 1.6 3.4E-05 29.5 3.2 34 58-95 23-57 (64)
403 PRK10906 DNA-binding transcrip 83.3 1.3 2.8E-05 39.3 3.6 47 45-95 6-52 (252)
404 KOG1596 Fibrillarin and relate 83.0 6.2 0.00013 34.4 7.2 97 195-295 154-262 (317)
405 COG4565 CitB Response regulato 83.0 1.5 3.2E-05 37.3 3.5 34 58-95 173-206 (224)
406 KOG0024 Sorbitol dehydrogenase 82.9 11 0.00024 34.5 9.1 96 195-298 167-277 (354)
407 PF04182 B-block_TFIIIC: B-blo 82.5 1.7 3.7E-05 30.5 3.2 47 45-95 3-51 (75)
408 COG1497 Predicted transcriptio 82.3 2.6 5.7E-05 36.4 4.8 52 56-114 23-74 (260)
409 PF05711 TylF: Macrocin-O-meth 81.7 1.9 4.1E-05 38.0 3.9 97 197-295 74-213 (248)
410 PRK11886 bifunctional biotin-- 81.7 2.1 4.5E-05 39.5 4.4 56 46-108 6-62 (319)
411 PF01189 Nol1_Nop2_Fmu: NOL1/N 81.6 2.2 4.8E-05 38.5 4.5 103 195-297 83-222 (283)
412 PF12692 Methyltransf_17: S-ad 81.6 6.8 0.00015 31.4 6.5 118 171-297 5-137 (160)
413 PF13730 HTH_36: Helix-turn-he 81.5 1.4 3.1E-05 28.6 2.4 29 60-92 27-55 (55)
414 smart00531 TFIIE Transcription 81.4 1.6 3.5E-05 35.2 3.1 42 48-93 5-46 (147)
415 PTZ00357 methyltransferase; Pr 81.3 5.2 0.00011 40.2 7.0 131 158-289 640-830 (1072)
416 PF12793 SgrR_N: Sugar transpo 81.1 1.6 3.5E-05 33.5 2.9 34 58-95 19-52 (115)
417 COG1675 TFA1 Transcription ini 81.1 2 4.4E-05 35.6 3.6 45 47-95 21-65 (176)
418 PF05732 RepL: Firmicute plasm 81.1 5 0.00011 33.0 5.9 44 58-108 75-118 (165)
419 PF02295 z-alpha: Adenosine de 81.0 0.93 2E-05 31.0 1.4 60 45-107 5-64 (66)
420 PRK10434 srlR DNA-bindng trans 80.9 1.7 3.6E-05 38.7 3.3 47 45-95 6-52 (256)
421 PRK10411 DNA-binding transcrip 80.1 2.9 6.4E-05 36.7 4.6 45 46-94 6-50 (240)
422 COG3413 Predicted DNA binding 80.1 1.9 4.2E-05 37.1 3.4 43 36-85 159-201 (215)
423 PRK07417 arogenate dehydrogena 79.9 8.2 0.00018 34.7 7.6 83 200-290 2-87 (279)
424 COG2512 Predicted membrane-ass 79.6 2.6 5.6E-05 37.4 4.0 46 46-95 197-243 (258)
425 PF13384 HTH_23: Homeodomain-l 79.3 1.5 3.3E-05 27.7 1.9 41 45-91 6-46 (50)
426 PRK09802 DNA-binding transcrip 78.9 2.2 4.8E-05 38.2 3.5 47 45-95 18-64 (269)
427 TIGR02698 CopY_TcrY copper tra 78.3 4.1 8.9E-05 32.1 4.4 47 45-95 5-55 (130)
428 PF14338 Mrr_N: Mrr N-terminal 77.9 8.4 0.00018 28.1 5.8 64 49-116 25-91 (92)
429 PF02636 Methyltransf_28: Puta 77.8 3.8 8.2E-05 36.3 4.6 33 197-229 18-58 (252)
430 PF13518 HTH_28: Helix-turn-he 77.7 3.4 7.4E-05 26.2 3.3 37 49-91 5-41 (52)
431 COG5631 Predicted transcriptio 77.3 9.2 0.0002 30.9 6.0 78 33-113 65-150 (199)
432 PF11994 DUF3489: Protein of u 77.2 7.2 0.00016 27.0 4.7 44 49-96 15-60 (72)
433 KOG1501 Arginine N-methyltrans 76.3 2.7 5.9E-05 39.7 3.3 88 197-285 66-165 (636)
434 PF05206 TRM13: Methyltransfer 76.2 6.5 0.00014 35.0 5.6 35 195-229 16-55 (259)
435 TIGR01321 TrpR trp operon repr 76.2 3.6 7.9E-05 30.2 3.3 41 42-87 40-80 (94)
436 KOG2539 Mitochondrial/chloropl 75.8 7.8 0.00017 37.1 6.2 101 197-297 200-318 (491)
437 COG1339 Transcriptional regula 75.7 6.5 0.00014 32.9 5.0 53 58-114 19-71 (214)
438 COG1349 GlpR Transcriptional r 75.2 3.3 7.1E-05 36.8 3.5 46 46-95 7-52 (253)
439 TIGR02147 Fsuc_second hypothet 75.1 4.9 0.00011 36.0 4.5 46 58-110 137-184 (271)
440 PRK09334 30S ribosomal protein 75.0 2.8 6E-05 30.3 2.4 42 49-94 28-73 (86)
441 PRK09775 putative DNA-binding 74.9 3.9 8.4E-05 39.4 4.1 55 49-110 5-59 (442)
442 PF09681 Phage_rep_org_N: N-te 74.9 5.1 0.00011 31.1 4.0 46 57-109 52-97 (121)
443 cd00315 Cyt_C5_DNA_methylase C 74.4 20 0.00044 32.1 8.5 122 200-346 2-141 (275)
444 PF13814 Replic_Relax: Replica 74.4 6.8 0.00015 32.8 5.1 62 52-114 3-71 (191)
445 PRK04424 fatty acid biosynthes 74.2 2 4.3E-05 36.2 1.8 46 45-94 8-53 (185)
446 PRK15001 SAM-dependent 23S rib 74.1 22 0.00049 33.5 8.9 90 200-296 47-144 (378)
447 PRK12423 LexA repressor; Provi 73.4 5.2 0.00011 34.1 4.2 35 58-95 25-59 (202)
448 PF08784 RPA_C: Replication pr 73.2 3.1 6.7E-05 31.1 2.5 45 46-94 49-97 (102)
449 PRK00215 LexA repressor; Valid 73.0 7.7 0.00017 33.0 5.2 35 58-95 23-57 (205)
450 TIGR00561 pntA NAD(P) transhyd 72.5 12 0.00026 36.7 6.9 92 197-292 163-282 (511)
451 KOG2651 rRNA adenine N-6-methy 72.5 5.2 0.00011 37.2 4.1 42 187-229 143-184 (476)
452 PF00165 HTH_AraC: Bacterial r 72.4 3.7 8E-05 24.9 2.3 31 51-87 3-33 (42)
453 PRK09954 putative kinase; Prov 72.1 5 0.00011 37.6 4.1 44 46-93 5-48 (362)
454 TIGR01202 bchC 2-desacetyl-2-h 71.5 20 0.00043 32.6 7.9 86 197-295 144-232 (308)
455 cd08237 ribitol-5-phosphate_DH 71.4 24 0.00052 32.6 8.5 93 196-295 162-257 (341)
456 PRK08507 prephenate dehydrogen 71.1 16 0.00035 32.7 7.0 84 200-291 2-88 (275)
457 PF08222 HTH_CodY: CodY helix- 71.0 4.1 8.9E-05 26.7 2.2 34 57-94 3-36 (61)
458 PHA02701 ORF020 dsRNA-binding 71.0 6.1 0.00013 32.8 3.8 47 45-95 5-52 (183)
459 TIGR03433 padR_acidobact trans 70.9 14 0.0003 27.4 5.6 61 49-114 9-82 (100)
460 COG0640 ArsR Predicted transcr 70.2 10 0.00023 27.4 4.8 47 45-95 26-72 (110)
461 PF03269 DUF268: Caenorhabditi 70.2 4.6 9.9E-05 32.9 2.8 43 257-299 65-116 (177)
462 PF01358 PARP_regulatory: Poly 69.8 29 0.00064 31.2 8.0 78 196-297 57-138 (294)
463 PF02254 TrkA_N: TrkA-N domain 69.8 5.6 0.00012 30.1 3.3 82 206-293 4-95 (116)
464 PF06969 HemN_C: HemN C-termin 69.6 6.7 0.00015 26.4 3.3 46 57-110 19-65 (66)
465 PRK01381 Trp operon repressor; 69.2 6.9 0.00015 29.0 3.4 39 43-86 41-79 (99)
466 PF00126 HTH_1: Bacterial regu 69.0 7.3 0.00016 25.8 3.3 55 46-110 3-60 (60)
467 TIGR03338 phnR_burk phosphonat 68.4 10 0.00022 32.4 4.9 44 58-108 34-77 (212)
468 PF03428 RP-C: Replication pro 68.4 6.3 0.00014 32.8 3.4 34 58-95 70-104 (177)
469 PRK11639 zinc uptake transcrip 68.3 10 0.00022 31.3 4.7 53 43-95 25-79 (169)
470 PRK00135 scpB segregation and 68.2 11 0.00025 31.7 5.0 42 47-95 93-134 (188)
471 PF07848 PaaX: PaaX-like prote 67.6 3.5 7.5E-05 28.6 1.5 48 58-109 20-70 (70)
472 PF03297 Ribosomal_S25: S25 ri 67.6 5.2 0.00011 30.1 2.5 43 49-95 46-92 (105)
473 PRK13699 putative methylase; P 67.3 9.2 0.0002 33.3 4.5 51 242-292 2-70 (227)
474 PRK06719 precorrin-2 dehydroge 67.2 50 0.0011 26.8 8.5 78 197-282 12-92 (157)
475 PRK13239 alkylmercury lyase; P 66.8 5.6 0.00012 33.9 2.9 39 45-87 23-61 (206)
476 PRK06545 prephenate dehydrogen 66.7 28 0.00061 32.6 7.9 84 200-288 2-89 (359)
477 COG1510 Predicted transcriptio 66.6 6 0.00013 32.4 2.9 35 57-95 40-74 (177)
478 PHA02591 hypothetical protein; 66.4 7.4 0.00016 27.2 2.8 29 51-84 53-81 (83)
479 PRK09391 fixK transcriptional 66.4 11 0.00023 32.8 4.7 42 58-106 179-220 (230)
480 PF05331 DUF742: Protein of un 66.3 8.6 0.00019 29.5 3.5 40 49-94 48-87 (114)
481 PF09107 SelB-wing_3: Elongati 65.8 11 0.00023 24.2 3.4 41 51-95 3-43 (50)
482 COG1802 GntR Transcriptional r 65.5 16 0.00035 31.7 5.7 46 58-110 39-84 (230)
483 KOG1098 Putative SAM-dependent 65.5 9.6 0.00021 37.8 4.5 109 187-300 34-163 (780)
484 PRK10736 hypothetical protein; 65.4 9.5 0.00021 35.8 4.4 52 47-106 311-362 (374)
485 COG3682 Predicted transcriptio 65.0 13 0.00027 28.9 4.2 63 44-108 6-68 (123)
486 PRK11534 DNA-binding transcrip 65.0 14 0.00029 32.0 5.1 34 58-95 30-63 (224)
487 PRK11161 fumarate/nitrate redu 64.9 7.6 0.00017 33.7 3.6 41 58-106 184-224 (235)
488 TIGR01714 phage_rep_org_N phag 64.8 12 0.00025 29.0 4.0 44 57-107 50-93 (119)
489 cd00401 AdoHcyase S-adenosyl-L 64.6 34 0.00073 32.8 8.0 98 186-295 190-290 (413)
490 PF02319 E2F_TDP: E2F/DP famil 64.5 2.2 4.9E-05 29.6 0.1 43 49-94 16-61 (71)
491 PRK03659 glutathione-regulated 64.5 25 0.00054 35.5 7.5 88 199-294 401-498 (601)
492 PF11599 AviRa: RRNA methyltra 64.4 47 0.001 28.7 7.8 100 195-294 49-214 (246)
493 PF05491 RuvB_C: Holliday junc 64.4 7.7 0.00017 27.2 2.7 47 56-110 23-70 (76)
494 KOG2352 Predicted spermine/spe 64.3 11 0.00024 36.3 4.6 102 197-299 295-421 (482)
495 PF01210 NAD_Gly3P_dh_N: NAD-d 64.0 7.1 0.00015 31.7 3.0 90 200-294 1-103 (157)
496 PRK09333 30S ribosomal protein 64.0 22 0.00048 28.6 5.6 61 50-114 59-129 (150)
497 PF03807 F420_oxidored: NADP o 64.0 2.9 6.4E-05 30.5 0.6 83 201-291 2-91 (96)
498 PRK11753 DNA-binding transcrip 63.6 8.7 0.00019 32.6 3.6 33 58-94 168-200 (211)
499 TIGR03697 NtcA_cyano global ni 63.6 8.9 0.00019 31.9 3.6 33 58-94 143-175 (193)
500 PF08280 HTH_Mga: M protein tr 63.5 8.1 0.00018 25.6 2.6 40 44-87 5-44 (59)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=320.70 Aligned_cols=337 Identities=46% Similarity=0.799 Sum_probs=298.3
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCc-CCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~-~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
+....-.++++++++..++++++|++||+||.|++.++ +.+||..+.. ++|.++..++|+||.|+++++++....+.
T Consensus 3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~ 80 (342)
T KOG3178|consen 3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAGS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGG 80 (342)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecc
Confidence 34556678999999999999999999999999999543 8888888774 45568899999999999999999864332
Q ss_pred CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhh
Q 018145 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFN 179 (360)
Q Consensus 100 ~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 179 (360)
. .|++++.++.++...+..++..++...+.+..++.|.++.++++.+..++...+|...++|...+......+++.|..
T Consensus 81 ~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~ 159 (342)
T KOG3178|consen 81 E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSF 159 (342)
T ss_pred e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHH
Confidence 3 899999999998777666888888887788899999999999999988999999977899988888778899999999
Q ss_pred cchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-CCcEEEecCCCCCCCCCcE
Q 018145 180 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-AGVEHVGGNMFESVPEGDA 258 (360)
Q Consensus 180 ~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~d~~~~~~~~D~ 258 (360)
.+......+++.+.+++.....+|+|+|.|..+..++..||+++++.+|+|.+++.+... ++|+.+.+|++++.|++|+
T Consensus 160 l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 160 LSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence 988888888888887888899999999999999999999999999999999999999888 8999999999999999999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC-CCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE-IPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
|++.++||||+|+++.++|++++++|+|||++++.|.+.++ .............+++.|+..+.+|+.|+.+|+..++.
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~ 319 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLP 319 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcch
Confidence 99999999999999999999999999999999999998875 32222223345567888888777899999999999999
Q ss_pred HcCCceeeEEecCCceeEEEEeC
Q 018145 338 AAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 338 ~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
++||.+..+...+...++|+++|
T Consensus 320 ~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 320 EEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred hhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999987
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=4.1e-39 Score=294.63 Aligned_cols=289 Identities=19% Similarity=0.338 Sum_probs=212.3
Q ss_pred HHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCC
Q 018145 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (360)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~ 116 (360)
...+|++|++|||||.|.+ ||.|+++||+++|+ +++.+++||++|+++|+|++ ++++|++|+.++.++.+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~-gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~----~~~~y~~t~~~~~~l~~~ 73 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL----EDGKWSLTEFADYMFSPT 73 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc-CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEe----cCCcEecchhHHhhccCC
Confidence 4689999999999999987 69999999999999 99999999999999999996 568999999999888766
Q ss_pred CCCC---hHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHh-hcchhhHHHHHhhc
Q 018145 117 DGAS---LGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMF-NHSTIAMERILEHY 192 (360)
Q Consensus 117 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~i~~~~ 192 (360)
+..+ +..+..+. .......|.++.++++++ ++|...++ +....++ ...|...|. .......+.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~-~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 145 (306)
T TIGR02716 74 PKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQ-KNFKGQVP-----YPPVTRE-DNLYFEEIHRSNAKFAIQLLLEEA 145 (306)
T ss_pred ccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCC-cccccccC-----CCCCCHH-HHHhHHHHHHhcchhHHHHHHHHc
Confidence 5321 11222221 111224578899998843 34432221 1111112 223444443 33333445566666
Q ss_pred ccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCCcEEEeccc
Q 018145 193 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 264 (360)
Q Consensus 193 ~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~D~i~~~~v 264 (360)
+ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++ +||+++.+|+++ ++|.+|+|+++++
T Consensus 146 ~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~ 224 (306)
T TIGR02716 146 K-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRI 224 (306)
T ss_pred C-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhh
Confidence 6 777899999999999999999999999999999999888877542 579999999997 6676799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh--cCCCccCCHHHHHHHHHHcCCc
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR--DGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
+|+|+++.+.++|++++++|||||+|+|.|.+.++.. .+... ...+..+... ..-...++.++|.++|+++||+
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~ 300 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFD---YLSHYILGAGMPFSVLGFKEQARYKEILESLGYK 300 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-Cchhh---HHHHHHHHcccccccccCCCHHHHHHHHHHcCCC
Confidence 9999988889999999999999999999998876532 22111 1122111000 0011234579999999999999
Q ss_pred eeeEE
Q 018145 343 GINFA 347 (360)
Q Consensus 343 ~~~~~ 347 (360)
.++++
T Consensus 301 ~v~~~ 305 (306)
T TIGR02716 301 DVTMV 305 (306)
T ss_pred eeEec
Confidence 88765
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=3.8e-39 Score=285.14 Aligned_cols=238 Identities=29% Similarity=0.623 Sum_probs=206.4
Q ss_pred CCCceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHH
Q 018145 98 GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAM 177 (360)
Q Consensus 98 ~~~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 177 (360)
+++++|++|+.|+.|+.+++..++..++.+...+.++..|.+|.+++++|.+++...+|.++|+++.++++....|+.+|
T Consensus 1 ~~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 80 (241)
T PF00891_consen 1 KEGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAM 80 (241)
T ss_dssp SSTEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHH
T ss_pred CCCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHH
Confidence 36789999999999999988667777777766788999999999999999999998899889999999999999999999
Q ss_pred hhcchhhH-HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCCCC
Q 018145 178 FNHSTIAM-ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEG 256 (360)
Q Consensus 178 ~~~~~~~~-~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~ 256 (360)
...+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.||+++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 81 AEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred Hhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence 98888777 67777777 88889999999999999999999999999999999999998888889999999999988889
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCC--cEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGN--GKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~Lkpg--G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
|+|+++++||+|+++++.++|++++++|+|| |+|+|+|.+.++....+........+|+.|+..+ +|+.||.+||++
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ 238 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEA 238 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHH
Confidence 9999999999999999999999999999999 9999999999876555433222357899999887 699999999999
Q ss_pred HHH
Q 018145 335 LAI 337 (360)
Q Consensus 335 ll~ 337 (360)
||+
T Consensus 239 ll~ 241 (241)
T PF00891_consen 239 LLK 241 (241)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=1.3e-18 Score=150.17 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=119.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~v 264 (360)
..++.+|||||||||.++..+++..+..+++++|+ +.|++.++++ ..|+|+.+|+.+ |+|+. |+|.+++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 34689999999999999999999999999999999 8999999875 228999999999 99976 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHH-Hhhhc----C------------CCccC
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL-LMTRD----G------------GGRER 327 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~------------~~~~~ 327 (360)
|++++ +..+.|++++|+|||||++++.|...+..+... .....+.+. .+... . .-..+
T Consensus 129 lrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 129 LRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 99998 457899999999999999999999887643221 111111111 11111 0 11234
Q ss_pred CHHHHHHHHHHcCCceeeEEecCCce
Q 018145 328 TKKEYTELAIAAGFKGINFASCVCNL 353 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~ 353 (360)
+.+++.++++++||+.+.......+.
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~ 229 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGI 229 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeee
Confidence 78899999999999998865555443
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.79 E-value=1.8e-19 Score=157.08 Aligned_cols=156 Identities=23% Similarity=0.379 Sum_probs=81.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~ 263 (360)
..++.+|||+|||||.++..+++.. |+.+++++|+ +.|++.++++ .+|+++.+|+.+ ++++. |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999885 6789999999 9999998753 479999999999 88865 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh----hcCC-----------CccCC
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT----RDGG-----------GRERT 328 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------~~~~t 328 (360)
.+|++++ ..+.|++++|+|||||+++|+|...|..+. ....+...+...... .... ....+
T Consensus 125 glrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~--~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~ 200 (233)
T PF01209_consen 125 GLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPL--LRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPS 200 (233)
T ss_dssp -GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHH--HHHHHHH--------------------------------
T ss_pred hHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCch--hhceeeeeecccccccccccccccccccccccccccccc
Confidence 9999985 467899999999999999999998875311 101111111100000 0000 12237
Q ss_pred HHHHHHHHHHcCCceeeEEecCCcee
Q 018145 329 KKEYTELAIAAGFKGINFASCVCNLY 354 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~~~~~~ 354 (360)
.+++.++++++||+.++..+...+..
T Consensus 201 ~~~~~~~l~~~Gf~~v~~~~~~~G~~ 226 (233)
T PF01209_consen 201 PEELKELLEEAGFKNVEYRPLTFGIV 226 (233)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 78999999999999999887765543
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.79 E-value=8.9e-18 Score=149.74 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=115.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCC-CCCCC--cEEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG--DAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~~~~--D~i~ 260 (360)
..++.+|||||||+|.++..+++.+ |+.+++++|+ +.|++.|+++ .+++++.+|+.+ ++++. |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998875 6789999999 8899887532 378999999988 77754 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHH---hhhcCC-----------Ccc
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL---MTRDGG-----------GRE 326 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~~ 326 (360)
++.++|++++ ..++|++++++|||||++++.|...++....... ......... ...... ...
T Consensus 151 ~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 151 MGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999874 4679999999999999999999876542110000 000000000 000000 234
Q ss_pred CCHHHHHHHHHHcCCceeeEEecCCcee
Q 018145 327 RTKKEYTELAIAAGFKGINFASCVCNLY 354 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 354 (360)
++.+++.++++++||+.++......+..
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 6899999999999999999888765544
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.78 E-value=8.8e-19 Score=154.77 Aligned_cols=149 Identities=13% Similarity=0.205 Sum_probs=114.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCCcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~D~i~~~~v 264 (360)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.|+++ .+++++.+|+.+ +.+..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999874 7899999999 8899887643 368999999988 6666699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh-----------------hcCCCccC
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-----------------RDGGGRER 327 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 327 (360)
+|++++++...+|++++++|||||++++.|++.+.+.... . ....+.+.. ....-...
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~--~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN--H---LLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH--H---HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 9999988888999999999999999999998775532211 1 011111000 00012346
Q ss_pred CHHHHHHHHHHcCCceeeEEec
Q 018145 328 TKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
+.+++.++++++||+.+++...
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~ 228 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQ 228 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHH
Confidence 8999999999999998776543
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.77 E-value=1.1e-17 Score=149.33 Aligned_cols=155 Identities=18% Similarity=0.303 Sum_probs=119.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
..+++.+. +.++.+|||||||+|..+..+++.+ ..+++++|+ +.+++.++++ ++++++.+|+.+ +++.. |
T Consensus 42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 45666665 6788999999999999999988765 678999998 7888777643 579999999987 66654 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++..+++|++.++...+|++++++|||||+|++.++....... ... ..... .. .......+.+++.++|+
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~---~~~~~-~~--~~~~~~~~~~~~~~~l~ 191 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDE---EFKAY-IK--KRKYTLIPIQEYGDLIK 191 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHH---HHHHH-HH--hcCCCCCCHHHHHHHHH
Confidence 999999998888767889999999999999999999987644211 111 11111 11 11233568999999999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||+.+++.+..
T Consensus 192 ~aGF~~v~~~d~~ 204 (263)
T PTZ00098 192 SCNFQNVVAKDIS 204 (263)
T ss_pred HCCCCeeeEEeCc
Confidence 9999999988764
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.75 E-value=4.6e-17 Score=143.19 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=122.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~- 256 (360)
.++..++ .+++.+|||||||+|.++..+++.. |+.+++++|+ +.+++.++++ ++++++.+|+.+ +++..
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 4445555 5667899999999999999999886 6789999999 8888776542 578999999987 55543
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh-hhhHHHhh---------------
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS-LLDVLLMT--------------- 319 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~-~~~~~~~~--------------- 319 (360)
|+|++..++|++++. .++|+++.+.|+|||++++.+...++.. ....... .+...+..
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence 999999999998754 5799999999999999999987654321 1110000 00000000
Q ss_pred hcCCCccCCHHHHHHHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 320 RDGGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 320 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
.......++.+++.++|+++||+.+++.... +...++..+|
T Consensus 190 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 190 QESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0001234578999999999999999998887 5566777776
No 10
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.75 E-value=6e-17 Score=137.05 Aligned_cols=169 Identities=17% Similarity=0.225 Sum_probs=121.3
Q ss_pred HHHHHHHHhhcch-hhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC------CeEEEecc-hhHHHhCCCC--
Q 018145 170 NETYHEAMFNHST-IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ------IKAVNFDL-PHVVQDAPSY-- 239 (360)
Q Consensus 170 ~~~~~~~m~~~~~-~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~-- 239 (360)
....++.|+--.. ..-+-.+..+. ..+..++||++||||..+..+++..++ .+++++|+ |+++..++++
T Consensus 73 YD~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~ 151 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK 151 (296)
T ss_pred HHHHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh
Confidence 3445555543222 22223344444 455699999999999999999999877 78999999 9999887653
Q ss_pred -------CCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhh
Q 018145 240 -------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARE 309 (360)
Q Consensus 240 -------~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~ 309 (360)
.++.++++|+.+ |+|+. |.|++.+-+.+++ ++.+.|++++|+|||||++.+.|+---+. +...++
T Consensus 152 ~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~---~~l~~f 226 (296)
T KOG1540|consen 152 KRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVEN---EPLKWF 226 (296)
T ss_pred hcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcccccc---HHHHHH
Confidence 359999999999 99976 9999999999999 45789999999999999999999754331 111222
Q ss_pred hhhhhHHH-----------------hhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 310 TSLLDVLL-----------------MTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 310 ~~~~~~~~-----------------~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
...+.+.. +..+ =-+.++.+++..+.+++||+.+.
T Consensus 227 y~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 227 YDQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 21111111 1111 11345789999999999999887
No 11
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=1.6e-17 Score=147.23 Aligned_cols=151 Identities=13% Similarity=0.189 Sum_probs=112.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhh--CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCCcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~D~i~~~~v 264 (360)
.++.+|||||||+|..+..+++. .|+.+++++|. +.+++.|+++ .+++++.+|+.+ +.+..|+|+++.+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45689999999999999998884 68999999999 8999988653 379999999987 5555699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHh-------------hhcCCCccCCHHH
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM-------------TRDGGGRERTKKE 331 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~t~~e 331 (360)
+|++++++...++++++++|||||.|++.|.+.......... ....+.++... ....--...+.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999998888899999999999999999999776543221100 00111111000 0000112248899
Q ss_pred HHHHHHHcCCceeeEE
Q 018145 332 YTELAIAAGFKGINFA 347 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~ 347 (360)
..++|+++||+.++..
T Consensus 214 ~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 214 HKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHcCchhHHHH
Confidence 9999999999977654
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=8.3e-17 Score=143.55 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=110.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCC--CcEEEec
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPE--GDAILMK 262 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~--~D~i~~~ 262 (360)
..+++.++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+..+. .|+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence 45666666 56779999999999999999999999999999999 899998875 4689999998763232 3999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhh---hhhhHH-HhhhcCCCccCCHHHHHHHHHH
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET---SLLDVL-LMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
.++||+++. .+++++++++|||||++++..+.....+......... .+.... ......+....+.+++.++|++
T Consensus 97 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 97 AALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred hhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 999998754 6799999999999999998753211110000000000 010000 0000112234689999999999
Q ss_pred cCCceee
Q 018145 339 AGFKGIN 345 (360)
Q Consensus 339 aGf~~~~ 345 (360)
+||++..
T Consensus 175 aGf~v~~ 181 (255)
T PRK14103 175 AGCKVDA 181 (255)
T ss_pred CCCeEEE
Confidence 9998543
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.72 E-value=2.7e-16 Score=145.50 Aligned_cols=151 Identities=18% Similarity=0.240 Sum_probs=110.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC--cEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~--D~i~~~~v 264 (360)
.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 678999998 7888766542 479999999988 66654 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC-Cc-hhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-VS-SAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
+||+++ ..+++++++++|||||+|++.+........ .. ........++....... .....+.++|.++++++||.
T Consensus 196 ~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 999985 468999999999999999999876532211 10 00011111111111111 11234889999999999999
Q ss_pred eeeEEecC
Q 018145 343 GINFASCV 350 (360)
Q Consensus 343 ~~~~~~~~ 350 (360)
.+++.+..
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
No 14
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=131.47 Aligned_cols=173 Identities=14% Similarity=0.190 Sum_probs=127.4
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCCCC--CcEE
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPE--GDAI 259 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~~~--~D~i 259 (360)
.+..++..++ .....+|+|+|||+|..+..|++++|+..++++|. ++|++.|+++ +.++|..+|+.+-.|+ .|++
T Consensus 18 Pa~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 18 PARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred cHHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 4567888888 78889999999999999999999999999999998 9999998765 8899999999885553 3999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc---CCCccCCHHHHHHHH
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD---GGGRERTKKEYTELA 336 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll 336 (360)
+.+-+||+++|. .++|.++...|.|||.|.+.-+-.-..+.-..........-+...... ......+...|-++|
T Consensus 97 faNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 97 FANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 999999999865 689999999999999999876543222211110000000001111000 123455889999999
Q ss_pred HHcCCceeeEE------ecCCceeEEEEeC
Q 018145 337 IAAGFKGINFA------SCVCNLYIMEFFK 360 (360)
Q Consensus 337 ~~aGf~~~~~~------~~~~~~~vi~~~k 360 (360)
...+-+ +++. ++++...|+|++|
T Consensus 175 a~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 175 APLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred Ccccce-eeeeeeeccccCCCccchhhhee
Confidence 998744 4443 4457778888876
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=9.2e-16 Score=140.03 Aligned_cols=140 Identities=24% Similarity=0.372 Sum_probs=110.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cEEEeccccccC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 268 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~ 268 (360)
.+..+|||||||+|.++..+++.++..+++++|. +.+++.++++ .+++++.+|+.+ +++.+ |+|+++.++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3467999999999999999999988889999998 8888887654 578999999987 66543 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
++. ..+|++++++|||||+++++++..+.. +... ...+..+ ..++.+++.++|+++||+.+++..
T Consensus 192 ~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDP--QRGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCH--HHHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEE
Confidence 865 468999999999999999987654321 1110 0111111 135789999999999999999887
Q ss_pred cC
Q 018145 349 CV 350 (360)
Q Consensus 349 ~~ 350 (360)
..
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 65
No 16
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.68 E-value=3.8e-15 Score=131.54 Aligned_cols=168 Identities=15% Similarity=0.229 Sum_probs=119.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
.++..+. ..++.+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 3444444 44568999999999999999999998 789999998 7777766543 468999999987 44433
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh----hhHHHhhhcCC-------
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL----LDVLLMTRDGG------- 323 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------- 323 (360)
|+|++++++|++++ ...+|+++.++|+|||++++.+...+.... ........ ......... +
T Consensus 121 ~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 195 (239)
T PRK00216 121 SFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPP--LKKAYDFYLFKVLPLIGKLIS-KNAEAYSY 195 (239)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchH--HHHHHHHHHHhhhHHHHHHHc-CCcHHHHH
Confidence 99999999999874 568899999999999999999987654211 00000000 000000000 1
Q ss_pred -----CccCCHHHHHHHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 324 -----GRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 324 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
...++.++|.++|+++||+.+++.... +-..++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578899999999999999998876 4456777665
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=1.5e-15 Score=147.51 Aligned_cols=152 Identities=16% Similarity=0.274 Sum_probs=116.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-- 256 (360)
+.+++.+. .+++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.|++. .++++..+|+.+ ++|..
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 45666665 5677899999999999999988876 779999999 7888877542 478999999988 56643
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++..+++|+++. .++|++++++|||||++++.++......... . ...... ..+...++.+++.+++
T Consensus 334 D~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~---~~~~~~---~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSP---E---FAEYIK---QRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---H---HHHHHH---hcCCCCCCHHHHHHHH
Confidence 999999999998854 6899999999999999999998764321111 1 111111 1244577899999999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||+++.+....
T Consensus 403 ~~aGF~~i~~~d~~ 416 (475)
T PLN02336 403 KDAGFDDVIAEDRT 416 (475)
T ss_pred HHCCCeeeeeecch
Confidence 99999998776543
No 18
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=4.6e-15 Score=129.58 Aligned_cols=169 Identities=16% Similarity=0.199 Sum_probs=119.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
.++..+. ..++.+|||+|||+|..+..+++.+|. .+++++|. +.+++.+++. .++++..+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3444443 446789999999999999999999987 78999998 7777766542 468999999987 54433 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh---hcC-C----------
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT---RDG-G---------- 323 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~---------- 323 (360)
+|+++.++|+.++ ...+|+++++.|+|||++++.+...+.... ............+.. ... .
T Consensus 109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (223)
T TIGR01934 109 AVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES 184 (223)
T ss_pred EEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHH
Confidence 9999999998774 568999999999999999999876543211 100000000000000 000 0
Q ss_pred -CccCCHHHHHHHHHHcCCceeeEEecCCc-eeEEEEeC
Q 018145 324 -GRERTKKEYTELAIAAGFKGINFASCVCN-LYIMEFFK 360 (360)
Q Consensus 324 -~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 360 (360)
....+..+|.++|+++||+.+++.+...+ ..+++++|
T Consensus 185 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 12347889999999999999999988866 44666654
No 19
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=9.2e-16 Score=134.70 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=128.3
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~ 256 (360)
.+.+++.+. ++++.+|||||||.|.++...+++| +++++++++ +++.+.++++ .+|++.-.|..+..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 356677777 8999999999999999999999999 999999998 7777776652 47899999887644447
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|-|++..+++|+..+.-..+++++++.|+|||++++.....+..+.. ...++...-.++||..++..++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999889999999999999999999999877653211 12223333345799999999999999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||.+.+.....
T Consensus 212 ~~~~~~v~~~~~~~ 225 (283)
T COG2230 212 SEAGFVVLDVESLR 225 (283)
T ss_pred HhcCcEEehHhhhc
Confidence 99999988876554
No 20
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.66 E-value=9.1e-16 Score=136.83 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=111.9
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------CCCcEEEecCCCCCCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~ 256 (360)
.+.+++++. ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+..+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 346777776 8899999999999999999999998 789999988 666665532 157999999987632345
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|.|++..++.|++.+....+++++++.|||||++++...+....... .......++.....+++|..++.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 99999999999998888999999999999999999988777542110 000001133333335788999999999999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||++..+...+
T Consensus 206 ~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 206 EDAGLEVEDVENLG 219 (273)
T ss_dssp HHTT-EEEEEEE-H
T ss_pred hcCCEEEEEEEEcC
Confidence 99999998887654
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.65 E-value=3.9e-15 Score=127.28 Aligned_cols=141 Identities=12% Similarity=0.169 Sum_probs=106.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~- 256 (360)
+.+++.++ ..++.+|||+|||+|..+..+++. +.+++++|+ +.+++.+++. .++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34555555 445689999999999999999986 468899998 8888876542 458888899877 45544
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++..++|++++++...++++++++|||||++++++....++.... .......+.+|+.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~----------------~~~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC----------------CCCCCccCHHHHHHHh
Confidence 999999999999888889999999999999999888776543321100 0011234788899998
Q ss_pred HHcCCceeeEE
Q 018145 337 IAAGFKGINFA 347 (360)
Q Consensus 337 ~~aGf~~~~~~ 347 (360)
+ ||+++...
T Consensus 161 ~--~~~~~~~~ 169 (197)
T PRK11207 161 E--GWEMVKYN 169 (197)
T ss_pred C--CCeEEEee
Confidence 7 89887764
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.64 E-value=5.2e-15 Score=134.13 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=107.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC-------CCCCCcEEEecCCCC-CCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PSYAGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~~v~~~~~d~~~-~~~~~- 256 (360)
.++..+. ..++.+|||||||+|.++..++...+. .++++|. +.++..+ ....++.+..+++.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 4455444 345689999999999999999887654 7899997 5555432 123578888888776 33333
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++..++||+++. ..+|++++++|||||.|++.+...+......... ....-.|.. .-..++.+++..++
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p---~~ry~k~~n---v~flpS~~~L~~~L 261 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP---KDRYAKMKN---VYFIPSVSALKNWL 261 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCc---hHHHHhccc---cccCCCHHHHHHHH
Confidence 999999999998754 6789999999999999999887664432111000 000001110 11245899999999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||+.+++....
T Consensus 262 ~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 262 EKVGFENFRILDVL 275 (314)
T ss_pred HHCCCeEEEEEecc
Confidence 99999999987543
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.64 E-value=3.7e-15 Score=136.59 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=108.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC-------CCCCcEEEecCCCC-CCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~-~~~~~- 256 (360)
.+...++ ...+.+|||||||+|.++..+++..+. .++++|. +.++..++ ...+++++.+|+.+ +.+..
T Consensus 113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3344444 234589999999999999999998765 5899997 54444221 12479999999887 55444
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++..++||..+ ...+|+++++.|+|||++++.+.+.+.+....... ......+. ..-..++.+++.+++
T Consensus 191 D~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p---~~~y~~~~---~~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP---GDRYAKMR---NVYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc---hhHHhcCc---cceeCCCHHHHHHHH
Confidence 99999999999874 46799999999999999998776665432211000 00000010 011246899999999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||+.+++....
T Consensus 263 ~~aGF~~i~~~~~~ 276 (322)
T PRK15068 263 ERAGFKDVRIVDVS 276 (322)
T ss_pred HHcCCceEEEEeCC
Confidence 99999999997654
No 24
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.64 E-value=1.8e-15 Score=125.14 Aligned_cols=136 Identities=19% Similarity=0.263 Sum_probs=97.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCC-C-cEEEeccccccCCh
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPE-G-DAILMKWILHCWDD 270 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~-~-D~i~~~~vlh~~~~ 270 (360)
..+..+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... +.+. . |+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999966644 8999998 777776 223333333223 2333 3 99999999999984
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-cCCCccCCHHHHHHHHHHcCCceee
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-DGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
...+|+++++.|||||++++.++..... ... ....+.+... ......++.++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDP----SPR---SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHH---HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcch----hhh---HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 6789999999999999999999876421 000 0111111100 0244667999999999999999875
No 25
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.63 E-value=3.1e-15 Score=130.91 Aligned_cols=137 Identities=14% Similarity=0.287 Sum_probs=107.2
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEeccccccC
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCW 268 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~ 268 (360)
.+|||||||+|..+..+++.+|+.+++++|+ +.+++.++++ +++++...|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999998 7777766542 568999999876 45444 999999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
++ ...+|++++++|||||++++.+...+..... ... .......+..+|.++++++||++++...
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------~~~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAI--------EHE------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCccc--------ccc------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 75 4689999999999999999998754321000 000 0012245789999999999999999887
Q ss_pred cCC
Q 018145 349 CVC 351 (360)
Q Consensus 349 ~~~ 351 (360)
...
T Consensus 145 ~~~ 147 (224)
T smart00828 145 ASL 147 (224)
T ss_pred CcH
Confidence 653
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.63 E-value=7.6e-16 Score=119.49 Aligned_cols=98 Identities=21% Similarity=0.367 Sum_probs=82.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCC-CC-CCCC-CcEEEecc-c
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNM-FE-SVPE-GDAILMKW-I 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~-~~-~~~~-~D~i~~~~-v 264 (360)
++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.++++ ++|+++.+|+ .. +.++ .|+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 357999999999999999999999999999999 8888877542 6899999999 33 3333 39999999 6
Q ss_pred cccCCh-hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 265 LHCWDD-DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 265 lh~~~~-~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+|++.. ++..++|+++++.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 665543 577899999999999999999875
No 27
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.62 E-value=1.1e-14 Score=131.18 Aligned_cols=145 Identities=19% Similarity=0.316 Sum_probs=109.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~ 263 (360)
.+++.+|||||||+|..+..+++.. +..+++++|. +.+++.++++ ++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5667899999999999888777764 5678999998 8888887653 578999999987 66543 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCce
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 343 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 343 (360)
++|++++ ..+++++++++|||||+|++.+....... + .. ...+..+.... .+...+.++|.++|+++||..
T Consensus 155 v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~---~~--~~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGEL-P---EE--IRNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCC-C---HH--HHHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 9998774 35799999999999999999997754321 1 01 11111121111 234568899999999999999
Q ss_pred eeEEe
Q 018145 344 INFAS 348 (360)
Q Consensus 344 ~~~~~ 348 (360)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87754
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=1.1e-14 Score=130.15 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=108.7
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCCC-CC-cEEE
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVP-EG-DAIL 260 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~~-~~-D~i~ 260 (360)
...++..++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 446677666 66778999999999999999999999999999999 8899988765 679999999876323 23 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh---hhHHHhhhcC---CCccCCHHHHHH
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL---LDVLLMTRDG---GGRERTKKEYTE 334 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~t~~e~~~ 334 (360)
++.++|++++. ..+|++++++|||||++++..+. ....+........ ..+....... .....+..++.+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAPGGVLAVQMPD---NLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCCCcEEEEECCC---CCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 99999998754 67999999999999999986321 1111100000000 0000000000 123457788999
Q ss_pred HHHHcCCce
Q 018145 335 LAIAAGFKG 343 (360)
Q Consensus 335 ll~~aGf~~ 343 (360)
++.++|+.+
T Consensus 174 ~l~~~g~~v 182 (258)
T PRK01683 174 ALAPAACRV 182 (258)
T ss_pred HHHhCCCce
Confidence 999999874
No 29
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.61 E-value=1.9e-15 Score=137.58 Aligned_cols=144 Identities=15% Similarity=0.050 Sum_probs=104.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCC--CcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE--GDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~--~D~i~~~~vl 265 (360)
++.+|||||||+|.++..+++. +.+++++|. +.+++.|+.+ .+++++.+|+.+ +.+. .|+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4579999999999999988763 678999998 8888887642 368999999876 4443 3999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC----CccCCHHHHHHHHHHcCC
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG----GRERTKKEYTELAIAAGF 341 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~e~~~ll~~aGf 341 (360)
||+++. ..+|+.++++|||||.+++.+...... .+................+ .+.++.+++.++++++||
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 999865 579999999999999999987643210 0000000001111111111 235689999999999999
Q ss_pred ceeeEEe
Q 018145 342 KGINFAS 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
+++++..
T Consensus 283 ~i~~~~G 289 (322)
T PLN02396 283 DVKEMAG 289 (322)
T ss_pred eEEEEee
Confidence 9988853
No 30
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=5.3e-15 Score=143.02 Aligned_cols=141 Identities=19% Similarity=0.345 Sum_probs=107.7
Q ss_pred ChhhhhccCccHHHHHHHHHhhcchh--hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHH
Q 018145 158 HIFEYASGNPRFNETYHEAMFNHSTI--AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ 234 (360)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 234 (360)
.+|+++..+++....|...|...... ........++ +.++.+|||||||+|..+..+++.+|+.+++++|+ +.+++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 57888888887777777655432221 1111122223 45678999999999999999999999999999999 77888
Q ss_pred hCCCC-----CCcEEEecCCCC-C--CCCC--cEEEeccccccC-----------ChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 235 DAPSY-----AGVEHVGGNMFE-S--VPEG--DAILMKWILHCW-----------DDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 235 ~a~~~-----~~v~~~~~d~~~-~--~~~~--D~i~~~~vlh~~-----------~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
.++++ .+++++.+|+.+ + ++.+ |+|+++.++|+| ++++..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 77643 357888899876 3 4443 999999999976 2457789999999999999999999
Q ss_pred eeecCC
Q 018145 294 NSIVPE 299 (360)
Q Consensus 294 e~~~~~ 299 (360)
|.+.++
T Consensus 537 D~v~~E 542 (677)
T PRK06922 537 DGIMTE 542 (677)
T ss_pred eCccCC
Confidence 976654
No 31
>PRK08317 hypothetical protein; Provisional
Probab=99.60 E-value=2.5e-14 Score=126.23 Aligned_cols=155 Identities=22% Similarity=0.283 Sum_probs=110.7
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--c
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D 257 (360)
+...+. ..++.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++. .++++..+|+.+ +++.+ |
T Consensus 11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence 444454 6677899999999999999999988 7889999998 7777766543 568999999877 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC-CchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-VSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
+|++.++++++++ ...++++++++|||||++++.++....... ............... .......+..+|.+++
T Consensus 90 ~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 90 AVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS---DHFADPWLGRRLPGLF 164 (241)
T ss_pred EEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 9999999999885 467899999999999999998864322100 000001111111111 1122334567899999
Q ss_pred HHcCCceeeEEe
Q 018145 337 IAAGFKGINFAS 348 (360)
Q Consensus 337 ~~aGf~~~~~~~ 348 (360)
+++||+.+++..
T Consensus 165 ~~aGf~~~~~~~ 176 (241)
T PRK08317 165 REAGLTDIEVEP 176 (241)
T ss_pred HHcCCCceeEEE
Confidence 999999876643
No 32
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.59 E-value=2.3e-15 Score=123.51 Aligned_cols=137 Identities=20% Similarity=0.331 Sum_probs=100.0
Q ss_pred CCcceEEEEcCCcchHHHHHH-hhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC-cEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~-D~i~~~~ 263 (360)
++..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.|++. ++++|..+|+.+ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5678999999999 8999988762 579999999999 4 3333 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh--cCCCccCCHHHHHHHHHHcC
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR--DGGGRERTKKEYTELAIAAG 340 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aG 340 (360)
++|++++. ..+|+++.+.|+|||.+++.+........ ........+.+..+ ...+. ..++|..+|++||
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELP----EQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHH----HHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHH----HHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99998854 57899999999999999999987322100 01111111111111 11111 6788999999998
No 33
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=1.7e-14 Score=128.66 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=106.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC--CCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--SVPE- 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~--~~~~- 255 (360)
.+++.++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.|+++ ++++++.+|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555554 45689999999999999999987 467889998 8898887653 468999999866 2333
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch-hhhhhhh-hhHHH--hhhcCCCccCCHH
Q 018145 256 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS-AARETSL-LDVLL--MTRDGGGRERTKK 330 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~-~~~~~~~-~~~~~--~~~~~~~~~~t~~ 330 (360)
. |+|++..++|+++++ ..+|++++++|||||++++..+......-... ...+... ..+.. ..........+.+
T Consensus 112 ~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 189 (255)
T PRK11036 112 PVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPE 189 (255)
T ss_pred CCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHH
Confidence 3 999999999998754 57899999999999999987654321000000 0000000 00000 0000011235789
Q ss_pred HHHHHHHHcCCceeeEEecC
Q 018145 331 EYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~ 350 (360)
++.++++++||+++...-..
T Consensus 190 ~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 190 QVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred HHHHHHHHCCCeEeeeeeEE
Confidence 99999999999998766543
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.57 E-value=4.9e-14 Score=120.31 Aligned_cols=140 Identities=10% Similarity=0.101 Sum_probs=102.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~ 258 (360)
.+++.++ ..++.+|||+|||+|..+..+++. +.+++++|+ +.+++.+++. -.+.+...|+.. +.+.. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4555555 445689999999999999999986 468899998 8888866432 136777778765 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
|+++.++|++++++...++++++++|||||++++++......... . . +.....+.+++.++|.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~-~-------~--------~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC-H-------M--------PFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC-C-------C--------CcCccCCHHHHHHHhC-
Confidence 999999999988888899999999999999988877654321000 0 0 0122457889999886
Q ss_pred cCCceeeEE
Q 018145 339 AGFKGINFA 347 (360)
Q Consensus 339 aGf~~~~~~ 347 (360)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 58877765
No 35
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.55 E-value=7.8e-15 Score=109.94 Aligned_cols=88 Identities=18% Similarity=0.419 Sum_probs=76.0
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHH
Q 018145 202 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCL 274 (360)
Q Consensus 202 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~ 274 (360)
||||||+|..+..+++. +..+++++|. +.+++.+++. .++++..+|+.+ ++++. |+|++.+++||+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999999 8899999998 7778877653 567799999998 77755 999999999998 4668
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 018145 275 RILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 275 ~~L~~i~~~LkpgG~lli 292 (360)
+++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 36
>PRK06202 hypothetical protein; Provisional
Probab=99.55 E-value=2.1e-13 Score=119.92 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=101.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhh----CCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCC-C-cEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE-G-DAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~-~-D~i~~~~v 264 (360)
.++.+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++. .++++...+... +.+. . |+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46689999999999998888764 46779999999 8999988764 456776665443 3332 3 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc------CC-----CccCCHHHHH
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD------GG-----GRERTKKEYT 333 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~~t~~e~~ 333 (360)
+||+++++...+|++++++++ |.+++.+...+.. .+ . .+........ .. .+.++.+|+.
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~----~~---~-~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL----AY---A-LFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH----HH---H-HHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 999998888899999999998 6677766654321 00 0 0111111000 01 1346899999
Q ss_pred HHHHHcCCceeeEEec
Q 018145 334 ELAIAAGFKGINFASC 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
+++++ ||++....+.
T Consensus 209 ~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 209 ALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHhhC-CCeEEeccce
Confidence 99999 9998777654
No 37
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.55 E-value=1.9e-13 Score=121.68 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=105.5
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEE
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAI 259 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i 259 (360)
...+++.++ ..++.+|||||||+|.++..+.+. +.+++++|+ +.+++.+++. ..+.++.+|+.+ ++++. |+|
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 345566665 345689999999999999888764 468899998 8999988765 346789999987 66553 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
+++.++|+.++ ...+|++++++|+|||++++..+..... ......+.... . ........+.++|.+++...
T Consensus 108 ~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~-----~el~~~~~~~~-~-~~~~~~~~~~~~l~~~l~~~ 178 (251)
T PRK10258 108 WSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSL-----PELHQAWQAVD-E-RPHANRFLPPDAIEQALNGW 178 (251)
T ss_pred EECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCch-----HHHHHHHHHhc-c-CCccccCCCHHHHHHHHHhC
Confidence 99999997664 4689999999999999999988654321 01001111000 0 00123456889999999988
Q ss_pred CCce
Q 018145 340 GFKG 343 (360)
Q Consensus 340 Gf~~ 343 (360)
|+..
T Consensus 179 ~~~~ 182 (251)
T PRK10258 179 RYQH 182 (251)
T ss_pred Ccee
Confidence 8763
No 38
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.54 E-value=4e-13 Score=112.53 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=115.3
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hh----HHHhCCC--CCCc-EEEecCCCC---CCC-------CC-cEEE
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH----VVQDAPS--YAGV-EHVGGNMFE---SVP-------EG-DAIL 260 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~--~~~v-~~~~~d~~~---~~~-------~~-D~i~ 260 (360)
+|||||+|||..+..+++.+|+++.---|. +. +.+.... .+++ .=+..|+.. +.+ .. |.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999999999998855554 22 2221111 1221 122334433 111 23 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcC
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 340 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 340 (360)
+.+++|..+-..+..+++.+.++|+|||.|++.-++..+..-.+ .....+|-......+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 99999999988999999999999999999999998876542111 112234443333234567889999999999999
Q ss_pred CceeeEEecCCceeEEEEeC
Q 018145 341 FKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 341 f~~~~~~~~~~~~~vi~~~k 360 (360)
++.++.+.++..+-+++++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999999888988886
No 39
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.54 E-value=1.2e-13 Score=120.45 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=102.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCCcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~D~i~~~~vlh~ 267 (360)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .++++..+|+.+.....|+|++..++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45789999999999999999876 457888888 8888877653 3789999998773334499999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh--hcCCCccCCHHHHHHHHHHcCCceee
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT--RDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+++++...+++++.+.+++++.+.+.. .. .... ....+.-.... ....-..++.+++.++++++||+++.
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAP----KT---AWLA-FLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECC----Cc---hHHH-HHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 988788899999999998765544321 11 0000 00011100000 00012335889999999999999998
Q ss_pred EEecCC
Q 018145 346 FASCVC 351 (360)
Q Consensus 346 ~~~~~~ 351 (360)
......
T Consensus 204 ~~~~~~ 209 (219)
T TIGR02021 204 EGLVST 209 (219)
T ss_pred eecccc
Confidence 876654
No 40
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=1.5e-13 Score=121.31 Aligned_cols=136 Identities=17% Similarity=0.248 Sum_probs=104.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CCCCC--cEEEeccccccCCh
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 270 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~ 270 (360)
.+.+|||||||+|.++..+++.+|..+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457999999999999999999999999999998 7777766543 478999999987 54543 99999999998764
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
...+|++++++|+|||++++.++..... . .+..... ..+....+.++|.++++++ |+.+.+.
T Consensus 114 --~~~~l~~~~~~L~~~G~l~~~~~~~~~~------~---~~~~~~~---~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 --LSQALSELARVLKPGGLLAFSTFGPGTL------H---ELRQSFG---QHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHHcCCCcEEEEEeCCccCH------H---HHHHHHH---HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4679999999999999999987644321 0 0111111 0134556889999999998 8876654
No 41
>PRK05785 hypothetical protein; Provisional
Probab=99.54 E-value=2.8e-13 Score=118.16 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=105.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 272 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~ 272 (360)
++.+|||||||+|.++..+++.+ +.+++++|+ ++|++.+++. ..++.+|+.+ ++++. |+|++..++|++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d-- 125 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDN-- 125 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCC--
Confidence 36799999999999999999887 578999999 9999998764 3567889887 77654 99999999999875
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHH---HhhhcCCC-------------ccCCHHHHHHHH
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL---LMTRDGGG-------------RERTKKEYTELA 336 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------~~~t~~e~~~ll 336 (360)
..+.|++++|+||| .+.++|...++.... ........... +.... ++ ...+.+++.+++
T Consensus 126 ~~~~l~e~~RvLkp--~~~ile~~~p~~~~~--~~~~~~y~~~~~P~~~~~~-~~~~~~Y~yl~~si~~f~~~~~~~~~~ 200 (226)
T PRK05785 126 IEKVIAEFTRVSRK--QVGFIAMGKPDNVIK--RKYLSFYLRYIMPYIACLA-GAKCRDYKYIYYIYERLPTNSFHREIF 200 (226)
T ss_pred HHHHHHHHHHHhcC--ceEEEEeCCCCcHHH--HHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46799999999999 344666654432100 00111111111 11111 11 224789999999
Q ss_pred HHcCCceeeEEecCCcee-EEEEeC
Q 018145 337 IAAGFKGINFASCVCNLY-IMEFFK 360 (360)
Q Consensus 337 ~~aGf~~~~~~~~~~~~~-vi~~~k 360 (360)
+++| ..++......+.. +...+|
T Consensus 201 ~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 201 EKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHh-CceEEEEccccEEEEEEEee
Confidence 9984 6677777765543 555544
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.54 E-value=1.5e-13 Score=122.65 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=83.2
Q ss_pred CCcceEEEEcCCcch----HHHHHHhhCC-----CCeEEEecc-hhHHHhCCCC--------------------------
Q 018145 196 QNVERLVDVGGGFGV----TLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY-------------------------- 239 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 239 (360)
.++.+|+|+|||+|. ++..+++.++ +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 5666666654 578999999 8999988752
Q ss_pred -------CCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 240 -------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 240 -------~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+|+|..+|+.+ +.+.+ |+|++.++||+++++...+++++++++|+|||+|++...
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999998 44333 999999999999988888999999999999999998653
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.53 E-value=3.9e-15 Score=112.85 Aligned_cols=87 Identities=22% Similarity=0.428 Sum_probs=59.9
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CC---cEEEecCCCCCCC-CC-cEEEeccccccCC
Q 018145 202 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AG---VEHVGGNMFESVP-EG-DAILMKWILHCWD 269 (360)
Q Consensus 202 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~---v~~~~~d~~~~~~-~~-D~i~~~~vlh~~~ 269 (360)
||||||+|.++..+++.+|..+++++|+ +.+++.++++ .. +++...|.....+ +. |+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 8999888875 12 3344444443222 23 9999999999994
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 018145 270 DDHCLRILKNCYKAVPGNGKV 290 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~l 290 (360)
+...+|+++++.|||||+|
T Consensus 81 --~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred --hHHHHHHHHHHHcCCCCCC
Confidence 5679999999999999986
No 44
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.50 E-value=1.9e-13 Score=117.15 Aligned_cols=103 Identities=17% Similarity=0.403 Sum_probs=89.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCCCCC--cEEEeccccccCCh
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPEG--DAILMKWILHCWDD 270 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~~~~--D~i~~~~vlh~~~~ 270 (360)
..++.+|||||||+|..+..+++..|+.+++++|+ +.+++.|++. +++++..+|+.++++.. |+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34567999999999999999999889999999999 8999999774 67899999988865543 99999999999988
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
++..++++++++++ +++++|.|...++
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 88899999999998 5788888876544
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.50 E-value=2.2e-13 Score=127.69 Aligned_cols=154 Identities=10% Similarity=0.072 Sum_probs=114.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCCCCCCCcEEEe
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFESVPEGDAILM 261 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~~~~~~D~i~~ 261 (360)
..+++.+. .+++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ..+++...|+.+.....|+|++
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 34556665 6778899999999999999998876 678999998 8888877653 2477888887643123499999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
..+++|+++.....++++++++|||||++++.+...+...... ..+++-. .++++..++.+++.+.++ .||
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~~~-~~~ 305 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQASE-GLF 305 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHHHH-CCc
Confidence 9999999877778999999999999999999886554321110 0111111 135777888999888866 589
Q ss_pred ceeeEEecC
Q 018145 342 KGINFASCV 350 (360)
Q Consensus 342 ~~~~~~~~~ 350 (360)
.+.++...+
T Consensus 306 ~v~d~~~~~ 314 (383)
T PRK11705 306 VMEDWHNFG 314 (383)
T ss_pred EEEEEecCh
Confidence 988876554
No 46
>PRK04266 fibrillarin; Provisional
Probab=99.50 E-value=1.7e-12 Score=112.73 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=99.5
Q ss_pred hcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHH----hCCCCCCcEEEecCCCCC-----CCCC-cEE
Q 018145 191 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFES-----VPEG-DAI 259 (360)
Q Consensus 191 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~d~~~~-----~~~~-D~i 259 (360)
.++ .+++.+|||+|||+|.++..+++..+..+++++|. +.+++ .+++..+|.++.+|+.++ +++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 344 67788999999999999999999987678999998 76655 445457799999998752 2233 988
Q ss_pred EeccccccCChh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 260 LMKWILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 260 ~~~~vlh~~~~~-~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
++. .+++ ....+|+++++.|||||+++|.-+..+.+... ... +..++..+++++
T Consensus 146 ~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-------------------~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-------------------DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-------------------CHH-HHHHHHHHHHHH
Confidence 743 3322 33457899999999999999952221111000 000 112344599999
Q ss_pred cCCceeeEEecCCc---eeEEEEe
Q 018145 339 AGFKGINFASCVCN---LYIMEFF 359 (360)
Q Consensus 339 aGf~~~~~~~~~~~---~~vi~~~ 359 (360)
+||+.++......+ +..++++
T Consensus 201 aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 201 GGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred cCCeEEEEEcCCCCcCCeEEEEEE
Confidence 99999999887644 6666554
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=2.7e-13 Score=131.77 Aligned_cols=144 Identities=16% Similarity=0.254 Sum_probs=109.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC---CCCCC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE---SVPEG- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~---~~~~~- 256 (360)
..+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.++. .++++++.+|+.+ +++..
T Consensus 27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCC
Confidence 45556555 4456799999999999999999875 46888888 888876643 2578999999864 34443
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++||+++++...+|+++++.|||||++++.|.+....... .. . ......++..+|.++
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~---------~~---~--~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS---------KR---K--NNPTHYREPRFYTKV 169 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc---------cc---c--CCCCeecChHHHHHH
Confidence 99999999999998888999999999999999999999775432100 00 0 012334578899999
Q ss_pred HHHcCCceeeE
Q 018145 336 AIAAGFKGINF 346 (360)
Q Consensus 336 l~~aGf~~~~~ 346 (360)
|.++||.....
T Consensus 170 f~~~~~~~~~~ 180 (475)
T PLN02336 170 FKECHTRDEDG 180 (475)
T ss_pred HHHheeccCCC
Confidence 99999886643
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=6e-13 Score=120.61 Aligned_cols=132 Identities=13% Similarity=0.127 Sum_probs=100.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~ 267 (360)
.++.+|||||||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.. ..++. |+|++..++|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999885 468899998 7787766542 257888888876 44444 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
+++++...++++++++|+|||++++++....+....+ .+.....+.+|+.+++++ |++++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 9888889999999999999999888776543321100 011223578899999874 8887764
No 49
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.47 E-value=4.3e-13 Score=122.17 Aligned_cols=104 Identities=11% Similarity=0.223 Sum_probs=82.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-----CC--cEEEecCCCCC--CC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-----AG--VEHVGGNMFES--VP 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~~--v~~~~~d~~~~--~~ 254 (360)
..++..++ ++.+|||+|||+|..+..+++.++ ..+++++|+ +++++.++++ ++ |.++.+|+.+. .+
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34544443 457899999999999999999987 588999999 8888776542 33 56789999762 22
Q ss_pred C-----C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 255 E-----G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 255 ~-----~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
. . .++++.+.++++++++...+|++++++|+|||+++|
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2 2 355667889999999999999999999999999997
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.46 E-value=9.2e-13 Score=111.86 Aligned_cols=124 Identities=14% Similarity=0.237 Sum_probs=95.4
Q ss_pred hhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCCC-cEEEe
Q 018145 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILM 261 (360)
Q Consensus 190 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~~-D~i~~ 261 (360)
..+. ..++.+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|.....+.. |+|++
T Consensus 25 ~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 25 SKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred HhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence 4444 55678999999999999999999999999999999 8888777542 46899999876544444 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
....++ ...+++.+++.|+|||++++.....+ +..++.+++++.||
T Consensus 104 ~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~~-----------------------------~~~~~~~~l~~~g~ 149 (187)
T PRK08287 104 GGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILLE-----------------------------NLHSALAHLEKCGV 149 (187)
T ss_pred CCCccC-----HHHHHHHHHHhcCCCeEEEEEEecHh-----------------------------hHHHHHHHHHHCCC
Confidence 876543 34689999999999999988543211 23556788999999
Q ss_pred ceeeEEe
Q 018145 342 KGINFAS 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
+.+++..
T Consensus 150 ~~~~~~~ 156 (187)
T PRK08287 150 SELDCVQ 156 (187)
T ss_pred CcceEEE
Confidence 8777643
No 51
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.46 E-value=1.1e-12 Score=115.27 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCCcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~D~i~~~~vlh~ 267 (360)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .++++..+|+.......|+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4568999999999999999998754 5888888 8888877653 3689999994333223499999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-----cCCCccCCHHHHHHHHHHcCCc
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-----DGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
+++++...+++++.+.+++++. +.... .. +.. .......... .......+.++|.++++++||+
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~-i~~~~---~~---~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 208 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLI-FTFAP---YT---PLL----ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFK 208 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEE-EEECC---cc---HHH----HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCc
Confidence 9988889999999998754443 32221 10 000 0111110000 0122345789999999999999
Q ss_pred eeeEEecCC
Q 018145 343 GINFASCVC 351 (360)
Q Consensus 343 ~~~~~~~~~ 351 (360)
+.++.+...
T Consensus 209 ~~~~~~~~~ 217 (230)
T PRK07580 209 VVRTERISS 217 (230)
T ss_pred eEeeeeccc
Confidence 999877654
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.46 E-value=1.7e-12 Score=109.35 Aligned_cols=133 Identities=19% Similarity=0.216 Sum_probs=103.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCC-CCcEEEeccccccCC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVP-EGDAILMKWILHCWD 269 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~-~~D~i~~~~vlh~~~ 269 (360)
++.+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ .+++++.+|+.+..+ ..|+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999876 7888888 8888877653 357889999877333 349999998887665
Q ss_pred hh-------------------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHH
Q 018145 270 DD-------------------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 330 (360)
Q Consensus 270 ~~-------------------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 330 (360)
++ -...+|+.+.+.|||||++++++.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 32 135789999999999999999875321 245
Q ss_pred HHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 331 EYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
++.+++++.||+...+....-.+--++++|
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 678889999999888887766666666654
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.46 E-value=5.8e-14 Score=106.78 Aligned_cols=88 Identities=18% Similarity=0.399 Sum_probs=73.3
Q ss_pred EEEEcCCcchHHHHHHhhC---CCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEec-ccccc
Q 018145 201 LVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMK-WILHC 267 (360)
Q Consensus 201 vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~-~vlh~ 267 (360)
|||+|||+|..+..+.+.+ |..+++++|+ +.+++.+++. .+++++..|+.+ +...+ |+|+++ .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999998 8898887653 479999999988 54433 999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCc
Q 018145 268 WDDDHCLRILKNCYKAVPGNG 288 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG 288 (360)
+++++..++++++.+.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998
No 54
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.45 E-value=2.7e-13 Score=114.27 Aligned_cols=147 Identities=20% Similarity=0.303 Sum_probs=107.2
Q ss_pred cceEEEEcCCcchHHHHHHhhCCC--CeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-----CCCCC--cEEEec
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-----SVPEG--DAILMK 262 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~~~~--D~i~~~ 262 (360)
+.+||+||||.|....-+++..|+ +++..+|. |.+++..+++ .++.....|+.. +.+.+ |+|++.
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 348999999999999999999988 89999998 8899988765 345555555544 22233 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC---ccCCHHHHHHHHHHc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG---RERTKKEYTELAIAA 339 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~~e~~~ll~~a 339 (360)
++|..++++.....+++++++|||||.|++.|+...+-..-+.. ....++....+.. .| -..+.+++.+++.++
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~--~~~~i~~nfYVRg-DGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK--KGQCISENFYVRG-DGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhcc--CCceeecceEEcc-CCceeeeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999876432100000 0011111111111 22 124899999999999
Q ss_pred CCceeeEE
Q 018145 340 GFKGINFA 347 (360)
Q Consensus 340 Gf~~~~~~ 347 (360)
||..++..
T Consensus 229 gf~~~~~~ 236 (264)
T KOG2361|consen 229 GFEEVQLE 236 (264)
T ss_pred ccchhccc
Confidence 99987764
No 55
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=2.2e-12 Score=106.08 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=113.2
Q ss_pred HHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcE
Q 018145 171 ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVE 243 (360)
Q Consensus 171 ~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~ 243 (360)
..|++.|..+..-....+- .+-+......||+||||+|..-.. -.--|..+++.+|. |.|-+.+.+. ..+.
T Consensus 51 ~~yne~~~~ykrelFs~i~-~~~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIY-YFLGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHHhhhH-HHhcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceE
Confidence 3455556555443322222 122244557899999999986532 22226788999998 7776655432 4566
Q ss_pred -EEecCCCC-C-CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHh
Q 018145 244 -HVGGNMFE-S-VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM 318 (360)
Q Consensus 244 -~~~~d~~~-~-~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~ 318 (360)
|+.++..+ + ++++ |+|++..+|.-.. +..+.|+++.+.|+|||+++++|++..+..... .......+-...
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n--~i~q~v~ep~~~ 204 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWN--RILQQVAEPLWH 204 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHHH--HHHHHHhchhhh
Confidence 99998888 4 5655 9999999998654 668999999999999999999999876532111 011111121111
Q ss_pred hhcCCCccCCHHHHHHHHHHcCCceeeEEecCCc
Q 018145 319 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCN 352 (360)
Q Consensus 319 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 352 (360)
.. ..|-..|.+.| ++|+++-|+..+......+
T Consensus 205 ~~-~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~ 236 (252)
T KOG4300|consen 205 LE-SDGCVLTRDTG-ELLEDAEFSIDSCKRFNFG 236 (252)
T ss_pred ee-ccceEEehhHH-HHhhhcccccchhhcccCC
Confidence 11 24555677666 6778899999888776644
No 56
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.42 E-value=1.8e-13 Score=116.26 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=102.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CC--cEEEecCCCC-CCC--CCcEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AG--VEHVGGNMFE-SVP--EGDAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~--v~~~~~d~~~-~~~--~~D~i~~~~vlh~ 267 (360)
.+.+|||||||.|.++..+++.. .++++.|. +..++.|+.+ .. +++.....++ ... ..|+|+|..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 46899999999999999999986 78888998 8899988865 23 3466665555 222 2399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhh--hHHHhhhcCC----CccCCHHHHHHHHHHcCC
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL--DVLLMTRDGG----GRERTKKEYTELAIAAGF 341 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~t~~e~~~ll~~aGf 341 (360)
+++++ .+++.+.+.+||||.+++.+..+... ......+ .........+ .+...++|+..++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99764 59999999999999999988754321 1111111 1111111111 234578899999999999
Q ss_pred ceeeEEec
Q 018145 342 KGINFASC 349 (360)
Q Consensus 342 ~~~~~~~~ 349 (360)
.+.+...+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 88777543
No 57
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.42 E-value=3.9e-13 Score=114.87 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=104.1
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------C----CcEEEecCCCCCCCCCcEEEeccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------A----GVEHVGGNMFESVPEGDAILMKWI 264 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~d~~~~~~~~D~i~~~~v 264 (360)
+++|||||||+|-++..|++.. ..++++|. +.+++.|+++ . ++++.+.|.....+..|+|+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 4789999999999999999985 66888888 8899888764 1 367777777665555799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh--hhhHHHhhhcCC----CccCCHHHHHHHHHH
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS--LLDVLLMTRDGG----GRERTKKEYTELAIA 338 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~t~~e~~~ll~~ 338 (360)
++|+.+ ...+++.+.+.|||||+++|.+....-. .+... ..+........| .+..++++...++..
T Consensus 168 leHV~d--p~~~l~~l~~~lkP~G~lfittinrt~l------S~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 168 LEHVKD--PQEFLNCLSALLKPNGRLFITTINRTIL------SFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHHhC--HHHHHHHHHHHhCCCCceEeeehhhhHH------HhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh
Confidence 999764 4789999999999999999988654321 11111 111111111112 345689999999999
Q ss_pred cCCceeeEEec
Q 018145 339 AGFKGINFASC 349 (360)
Q Consensus 339 aGf~~~~~~~~ 349 (360)
+|+++..+...
T Consensus 240 ~~~~v~~v~G~ 250 (282)
T KOG1270|consen 240 NGAQVNDVVGE 250 (282)
T ss_pred cCcchhhhhcc
Confidence 99998777543
No 58
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.41 E-value=5.3e-12 Score=117.13 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=86.4
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCCCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPE 255 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~~~~~ 255 (360)
+.+++.++ .....+|||+|||+|.++..+++.+|..+++++|. +.+++.+++. .++++...|.++..+.
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence 44566666 33346999999999999999999999999999998 7788777642 2679999998875443
Q ss_pred --CcEEEecccccc---CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 --GDAILMKWILHC---WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 --~D~i~~~~vlh~---~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|+|+++--+|. ++++...++++.+++.|+|||.|+++-
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 399999766653 455566789999999999999999984
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.40 E-value=1.4e-11 Score=106.18 Aligned_cols=131 Identities=12% Similarity=0.099 Sum_probs=98.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------------------CCCcEEEecCCCC-CC--
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFE-SV-- 253 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~-- 253 (360)
.++.+|||+|||.|..+..|+++ +..++++|+ +.+++.+.+ ..+|++..+|+++ +.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45579999999999999999986 667999998 777776311 2468999999998 32
Q ss_pred -CCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 254 -PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 254 -~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
+..|.|+-+.++|+++++....+++.+.++|||||++++.....+.... .+.....+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~------------------~gpp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM------------------AGPPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC------------------CCcCCCCCHHHH
Confidence 2239999999999999999999999999999999998887765532100 001123578899
Q ss_pred HHHHHHcCCceeeEE
Q 018145 333 TELAIAAGFKGINFA 347 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~ 347 (360)
.++|.. +|.+..+.
T Consensus 173 ~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 173 EALYGG-HYEIELLE 186 (213)
T ss_pred HHHhcC-CceEEEEe
Confidence 998874 46555544
No 60
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.38 E-value=1.6e-11 Score=103.49 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=77.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCC-CcEEEeccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPE-GDAILMKWILH 266 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~-~D~i~~~~vlh 266 (360)
+++.+|||||||+|..+..+++..|+.+++++|. +.+++.+++. ++++++.+|+.+ +... .|+|++..+ .
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~ 122 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A 122 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c
Confidence 3478999999999999999999999999999998 7888777542 459999999987 3332 399998652 1
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
....+++.+++.|||||++++.+.
T Consensus 123 -----~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 123 -----SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -----CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 346789999999999999998853
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.38 E-value=8.2e-12 Score=109.98 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=102.9
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hh------HHHhCC-CCCCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH------VVQDAP-SYAGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~------~~~~a~-~~~~v~~~~~d~~~-~~~~~ 256 (360)
+.+...++.+ .+.+|||||||+|+++..++.+.+ ..++++|. +. .++... ....+.+...-+.+ +....
T Consensus 105 ~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 105 DRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 3455555423 458999999999999999999854 35788884 21 222222 12334444444444 33233
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++-.||+|..++ ...|+.+++.|+|||.|++-..+.+.+......+. ..+-.|.. --..+|...+..|
T Consensus 183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~---~rYa~m~n---v~FiPs~~~L~~w 254 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE---DRYAKMRN---VWFIPSVAALKNW 254 (315)
T ss_pred cCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC---CcccCCCc---eEEeCCHHHHHHH
Confidence 999999999998754 67899999999999999998877765432211100 00001110 1245699999999
Q ss_pred HHHcCCceeeEEecC
Q 018145 336 AIAAGFKGINFASCV 350 (360)
Q Consensus 336 l~~aGf~~~~~~~~~ 350 (360)
++.+||+.++++...
T Consensus 255 l~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 255 LERAGFKDVRCVDVS 269 (315)
T ss_pred HHHcCCceEEEecCc
Confidence 999999999998654
No 62
>PLN03075 nicotianamine synthase; Provisional
Probab=99.37 E-value=3.3e-12 Score=113.73 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=80.0
Q ss_pred CCcceEEEEcCCcchHHHH--HHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCCC---CCcEEEe
Q 018145 196 QNVERLVDVGGGFGVTLSM--ITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP---EGDAILM 261 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~~---~~D~i~~ 261 (360)
.++.+|+|||||.|.++.. ++..+|+.+++++|. +++++.|++. ++++|..+|..+..+ +.|+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3679999999998844333 335689999999999 8888877642 579999999987332 2399999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. ++|+|..++..++|+++++.|+|||.+++--
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999976777899999999999999999865
No 63
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.36 E-value=1.3e-12 Score=108.09 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=98.5
Q ss_pred hcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCCCCCCC--cEEEecc
Q 018145 191 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFESVPEG--DAILMKW 263 (360)
Q Consensus 191 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~~~~~--D~i~~~~ 263 (360)
.++ .....+++|+|||.|.++..|+.++- +.+++|. +.+++.|+++ ++|++...|+.+..|.+ |+|+++-
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 355 55678999999999999999999963 5677777 8888887653 78999999998866654 9999999
Q ss_pred ccccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 264 ILHCWDD-DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 264 vlh~~~~-~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
++|++++ ++...+++++.++|+|||.|++..... . ... ..|.....+.+.++|++. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-~-----------~c~--------~wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-A-----------NCR--------RWGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-H-----------HHH--------HTT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-C-----------ccc--------ccCcccchHHHHHHHHHH-hh
Confidence 9999986 678899999999999999999977521 0 111 123444788899999986 66
Q ss_pred eeeEEecC
Q 018145 343 GINFASCV 350 (360)
Q Consensus 343 ~~~~~~~~ 350 (360)
.++.+.+.
T Consensus 174 ~~~~~~~~ 181 (201)
T PF05401_consen 174 EVERVECR 181 (201)
T ss_dssp EEEEEEEE
T ss_pred heeEEEEc
Confidence 66665553
No 64
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.36 E-value=8.2e-12 Score=113.51 Aligned_cols=141 Identities=12% Similarity=0.053 Sum_probs=94.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCCCCCCCcEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFESVPEGDAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~~~~~D~i~~~~v 264 (360)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++|...|+.+.....|+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999986 568999998 8888877543 2467888887542223399999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC------CccCCHHHHHHHHHH
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG------GRERTKKEYTELAIA 338 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~t~~e~~~ll~~ 338 (360)
++|++++....+++.+.+ +.+||. +|.. .+.. .... .+...-.. ..+ ....+.+++.++|++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~l-iIs~--~p~~---~~~~----~l~~~g~~-~~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRL-IISF--APKT---LYYD----ILKRIGEL-FPGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEE-EEEe--CCcc---hHHH----HHHHHHhh-cCCCCcCceeeeCCHHHHHHHHHH
Confidence 999998777788888875 455544 4422 1211 0000 11110000 111 112379999999999
Q ss_pred cCCceeeEEecCC
Q 018145 339 AGFKGINFASCVC 351 (360)
Q Consensus 339 aGf~~~~~~~~~~ 351 (360)
+||++.+..-..+
T Consensus 290 AGf~v~~~~~~~~ 302 (315)
T PLN02585 290 AGWKVARREMTAT 302 (315)
T ss_pred CCCEEEEEEEeec
Confidence 9999877654443
No 65
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.36 E-value=9.4e-12 Score=104.63 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=72.9
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------CCCcEEEecCCCC-CCCC-CcEEEeccccccC
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPE-GDAILMKWILHCW 268 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~-~D~i~~~~vlh~~ 268 (360)
+.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ .... .|+|++.. +++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS- 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC-
Confidence 68999999999999999999999999999998 666665543 2469999999987 3222 39998866 543
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
...+++.+++.|+|||++++..
T Consensus 121 ----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 ----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEc
Confidence 3457888999999999999864
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.36 E-value=7.9e-12 Score=110.00 Aligned_cols=145 Identities=15% Similarity=0.064 Sum_probs=98.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-C-CC-CC-cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S-VP-EG-DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~-~~-~~-D~i~~~~vl 265 (360)
.++.+|||||||+|.++..+++. ..+++++|. +.+++.++++ .++++...|+.+ + .+ .. |+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45689999999999999988876 457888888 6777766532 346787777765 2 12 23 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc----CCCccCCHHHHHHHHHHcCC
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD----GGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~e~~~ll~~aGf 341 (360)
++.++ ...+|+.+.+.|+|||++++..+.... .................. ......+.++|.++++++||
T Consensus 125 ~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 125 EHVPD--PASFVRACAKLVKPGGLVFFSTLNRNL----KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hccCC--HHHHHHHHHHHcCCCcEEEEEecCCCh----HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 99874 357899999999999999987643211 000000000000010000 01234588999999999999
Q ss_pred ceeeEEe
Q 018145 342 KGINFAS 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
++++...
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9988753
No 67
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=2.5e-11 Score=111.97 Aligned_cols=108 Identities=17% Similarity=0.281 Sum_probs=85.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCCC-cEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DAI 259 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~~-D~i 259 (360)
.+++.++ .....+|||+|||+|.++..+++.+|..+++++|. +.+++.+++. -..+++..|.....++. |+|
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 3445454 23346899999999999999999999999999998 7788877642 23567888887754444 999
Q ss_pred EeccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vlh~~---~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+++-.+|+. ..+...++++.+.+.|||||+|+|+..
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 999999863 234567899999999999999999764
No 68
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.30 E-value=8e-11 Score=101.87 Aligned_cols=132 Identities=12% Similarity=0.108 Sum_probs=98.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------------------CCCcEEEecCCCCCCC--
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFESVP-- 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~~~~-- 254 (360)
.+..+|||+|||.|..+..|++. +.+++++|+ +..++.+.. ..+|++..+|+++..+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 44579999999999999999985 677999998 777775411 1468999999998322
Q ss_pred --CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 255 --EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 255 --~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
..|+|+-+.++|+++++...++++.+.++|+|||+++++....++... .+.....+.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~------------------~gPp~~~~~~el 175 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL------------------AGPPFSVSDEEV 175 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC------------------CCCCCCCCHHHH
Confidence 229999999999999999999999999999999987776655433210 001123588999
Q ss_pred HHHHHHcCCceeeEEe
Q 018145 333 TELAIAAGFKGINFAS 348 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~ 348 (360)
.+++.. +|.+..+..
T Consensus 176 ~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 176 EALYAG-CFEIELLER 190 (218)
T ss_pred HHHhcC-CceEEEeee
Confidence 999963 366655543
No 69
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.30 E-value=9.4e-12 Score=104.21 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=93.9
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----CCCcEEEecCCCC-CCCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~~~-D~ 258 (360)
.++..++ .-++.++||+|||.|..+..|++. +..++.+|. +..++.+++ .-.|+....|+.+ .++.. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 4555555 445789999999999999999998 456777777 555554432 1348889999987 56655 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
|++..++++++.+....+++++.+.++|||++++.......+...+ . +....+...|+.+.++
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~--------~--------~~~f~~~~~EL~~~y~- 160 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP--------S--------PFPFLLKPGELREYYA- 160 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S--------S----------S--B-TTHHHHHTT-
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC--------C--------CCCcccCHHHHHHHhC-
Confidence 9999999999999999999999999999999999776533221100 0 0112335667777776
Q ss_pred cCCceeeE
Q 018145 339 AGFKGINF 346 (360)
Q Consensus 339 aGf~~~~~ 346 (360)
||++++.
T Consensus 161 -dW~il~y 167 (192)
T PF03848_consen 161 -DWEILKY 167 (192)
T ss_dssp -TSEEEEE
T ss_pred -CCeEEEE
Confidence 5777664
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.29 E-value=4.2e-11 Score=94.33 Aligned_cols=99 Identities=15% Similarity=0.213 Sum_probs=77.5
Q ss_pred HhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---CCC-Cc
Q 018145 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPE-GD 257 (360)
Q Consensus 189 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~~~-~D 257 (360)
+..+. ..+..+|||+|||+|.++..+++.+|..+++++|. +.+++.+++. .+++++.+|+... .+. .|
T Consensus 12 ~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 12 LSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred HHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 34444 45567999999999999999999999999999998 7777776532 5688998887641 222 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
+|++....+ ...++++.+++.|||||++++.
T Consensus 91 ~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 999876543 3458999999999999999875
No 71
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=1.5e-10 Score=102.85 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=93.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hh----HHHhCCCCCCcEEEecCCCCCC-----CC-CcEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFESV-----PE-GDAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~~~-----~~-~D~i~~~ 262 (360)
+++..+|||+|||+|.++..+++.. +.-+++.+|+ +. +++.++...+|.++.+|+..+. .+ .|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999987 3568888987 43 6677766678999999986531 22 3999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
... + ++...++.++++.|||||+|+|.......+..+ ....+-.+|. ++|+++||+
T Consensus 210 va~---p-dq~~il~~na~r~LKpGG~~vI~ika~~id~g~-------------------~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VAQ---P-DQARIVALNAQYFLKNGGHFIISIKANCIDSTA-------------------KPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CCC---c-chHHHHHHHHHHhccCCCEEEEEEeccccccCC-------------------CHHHHHHHHH-HHHHHcCCc
Confidence 642 2 345567778999999999999942211111000 0011111344 889999999
Q ss_pred eeeEEecC
Q 018145 343 GINFASCV 350 (360)
Q Consensus 343 ~~~~~~~~ 350 (360)
.++.+.+.
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 99998876
No 72
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.27 E-value=2e-11 Score=106.72 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=97.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----C-CcEEEecCCCC-CCC--CC-cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----A-GVEHVGGNMFE-SVP--EG-DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-~v~~~~~d~~~-~~~--~~-D~i~~~~vl 265 (360)
++.+|||+|||+|.++..+++..+ +++++|. +.+++.++.+ . ++++...|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999998888654 5888887 7777766542 2 58888888765 322 23 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhh--HHHhhhcC----CCccCCHHHHHHHHHHc
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLD--VLLMTRDG----GGRERTKKEYTELAIAA 339 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~t~~e~~~ll~~a 339 (360)
|+.++. ..+|+.+++.|+|||++++.+...... ........ ........ .....+.++|.++++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKPGGILFFSTINRTPK------SYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCch------HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 998744 579999999999999999876532110 00000000 00000000 11334788999999999
Q ss_pred CCceeeEEe
Q 018145 340 GFKGINFAS 348 (360)
Q Consensus 340 Gf~~~~~~~ 348 (360)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988753
No 73
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.27 E-value=1.7e-11 Score=102.32 Aligned_cols=99 Identities=23% Similarity=0.381 Sum_probs=79.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-CC-cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-EG-DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~~-D~i~~~~vlh~ 267 (360)
+..+|||+|||+|.++..+++.+|+.+++.+|. +.+++.+++. ..++++..|.++..+ .. |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 568999999999999999999999999999998 8888877542 338999999998665 33 99999877776
Q ss_pred CCh---hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 268 WDD---DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 268 ~~~---~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
-.+ +-..++++.+.+.|||||+++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 443 2467899999999999999987553
No 74
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.26 E-value=1.4e-11 Score=105.69 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=77.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCC-CC-C--CCCC--cEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNM-FE-S--VPEG--DAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~-~~-~--~~~~--D~i~~~~ 263 (360)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. .+++++.+|+ .. + ++.+ |+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999999999998 8888877542 5799999998 43 3 4433 9999876
Q ss_pred ccccCCh------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 264 ILHCWDD------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 264 vlh~~~~------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
..++... .....+|++++++|||||++++...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 5432211 1136789999999999999998753
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.25 E-value=1.1e-10 Score=103.96 Aligned_cols=124 Identities=20% Similarity=0.299 Sum_probs=93.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCCC--cEEEeccccc-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG--DAILMKWILH- 266 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~~--D~i~~~~vlh- 266 (360)
.+.+|||+|||+|.++..+++.+|+.+++++|. +.+++.++.. ++++++.+|+.+..+.. |+|+++--.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346999999999999999999999999999998 8888877542 46999999998855433 9999843222
Q ss_pred -----cCChh------------------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC
Q 018145 267 -----CWDDD------------------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 323 (360)
Q Consensus 267 -----~~~~~------------------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (360)
.+..+ ....+++++.+.|+|||++++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------------
Confidence 22211 124689999999999999887321
Q ss_pred CccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 324 GRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 324 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
....+++.++++++||+.+++...-
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0124568889999999988887654
No 76
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.25 E-value=9.9e-11 Score=97.58 Aligned_cols=160 Identities=14% Similarity=0.191 Sum_probs=101.7
Q ss_pred hhhhccCccHHHHHHHHHhh----cchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHh
Q 018145 160 FEYASGNPRFNETYHEAMFN----HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD 235 (360)
Q Consensus 160 ~~~~~~~~~~~~~~~~~m~~----~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 235 (360)
++.+.++|+....|+++.+. +-..+.+.+++.+...++...|.|+|||.+.++..+.. ..++.-+|+-..
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---
Confidence 44566777777777666543 33335677777776444568999999999998866532 346777885221
Q ss_pred CCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh
Q 018145 236 APSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312 (360)
Q Consensus 236 a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~ 312 (360)
.+ .++..|+.+ |++.. |+++++..|.. -+...+|++++|.|||||.|.|.|....
T Consensus 105 ---n~--~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR-------------- 162 (219)
T PF05148_consen 105 ---NP--RVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR-------------- 162 (219)
T ss_dssp ---ST--TEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG--------------
T ss_pred ---CC--CEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc--------------
Confidence 12 467789987 87765 99999988864 2567899999999999999999997431
Q ss_pred hhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 313 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.-+.+++.+.++..||+.........+..+.+++|
T Consensus 163 -------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 -------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp --------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred -------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 11456678889999999988766667777777765
No 77
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3.7e-10 Score=99.79 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=86.7
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---C---CcEEEecCCCCCCCC-C
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A---GVEHVGGNMFESVPE-G 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~---~v~~~~~d~~~~~~~-~ 256 (360)
.+-+++.++ .....+|||+|||.|.++..+++.+|+.+++.+|. ..+++.++.. + +..+...|.+++..+ .
T Consensus 147 S~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 147 SRLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 345677777 44445999999999999999999999999999998 7788877764 2 235777787776554 4
Q ss_pred cEEEeccccccCC---hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWD---DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~---~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|+++=-+|.-- ..-..++++.+.+.|++||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9999998888622 12234899999999999999999875
No 78
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.21 E-value=4e-11 Score=100.98 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=96.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----CCC-cEEEecCCCCCCCC---CcEEEeccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAG-VEHVGGNMFESVPE---GDAILMKWILH 266 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-v~~~~~d~~~~~~~---~D~i~~~~vlh 266 (360)
+..+.||.|+|.|..+..++-.. .-++-.+|. +..++.|++ ..+ .++.+....+-.|+ .|+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46899999999999999876654 334555565 777777763 234 34555555442332 29999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeE
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 346 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
|++|++..++|++++++|+|+|.++|-|.+..... ..+| ...++-.|+.+.|+++|++||+++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D-----~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFD-----EEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEE-----TTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccC-----CccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999998876431 0122 012456789999999999999999887
Q ss_pred Eec
Q 018145 347 ASC 349 (360)
Q Consensus 347 ~~~ 349 (360)
..-
T Consensus 200 ~~Q 202 (218)
T PF05891_consen 200 EKQ 202 (218)
T ss_dssp EE-
T ss_pred ccc
Confidence 544
No 79
>PRK14968 putative methyltransferase; Provisional
Probab=99.21 E-value=5.7e-10 Score=94.69 Aligned_cols=124 Identities=22% Similarity=0.298 Sum_probs=91.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CC-cEEEecCCCCCCCC-C-cEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFESVPE-G-DAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~d~~~~~~~-~-D~i~~~~v 264 (360)
.++.+|||+|||+|.++..+++. +.+++++|. +.+++.+++. ++ +.++.+|+.+++++ . |+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999988 578888898 7888776432 22 88999998885544 3 99998654
Q ss_pred cccCC-------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCc
Q 018145 265 LHCWD-------------------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 325 (360)
Q Consensus 265 lh~~~-------------------~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (360)
+...+ ......+++++.++|||||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43211 1234578999999999999998765311
Q ss_pred cCCHHHHHHHHHHcCCceeeEEecC
Q 018145 326 ERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 326 ~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
...+++.+++.++||++..+....
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~~ 175 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEEK 175 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeecc
Confidence 023467789999999987765543
No 80
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.20 E-value=6.4e-11 Score=97.75 Aligned_cols=126 Identities=18% Similarity=0.179 Sum_probs=85.0
Q ss_pred EEecc-hhHHHhCCCC---------CCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 018145 225 VNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 225 ~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
+++|. +.|++.|+++ .+++++.+|+.+ +++.. |+|++..++|++++ ..++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEE
Confidence 36777 8888877432 369999999988 76653 99999999999874 4689999999999999999
Q ss_pred EEeeecCCCCCCchhhhhhhh-hhHHHhhhcCC-----------CccCCHHHHHHHHHHcCCceeeEEecCCc
Q 018145 292 VMNSIVPEIPEVSSAARETSL-LDVLLMTRDGG-----------GRERTKKEYTELAIAAGFKGINFASCVCN 352 (360)
Q Consensus 292 i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 352 (360)
+.|...++..-......+... .-......... ...++.+++.++|+++||+.++......+
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 999876442100000000000 00000000000 12358899999999999999988777644
No 81
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=6.9e-10 Score=100.17 Aligned_cols=135 Identities=21% Similarity=0.280 Sum_probs=97.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC-C-cEEEeccc-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMKWI- 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~-~-D~i~~~~v- 264 (360)
..++.+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++. .+++++.+|++++.+. . |+|+++--
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999998 7777776542 4799999999875542 3 99988421
Q ss_pred -----cccCCh------------------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc
Q 018145 265 -----LHCWDD------------------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 321 (360)
Q Consensus 265 -----lh~~~~------------------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (360)
++.+.+ +....+++++.+.|+|||++++ +.. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g--~---------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG--Y---------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC--c----------------------
Confidence 111111 1235788999999999999987 210 0
Q ss_pred CCCccCCHHHHHHHHHHcCCceeeEEec-CCceeEEEEe
Q 018145 322 GGGRERTKKEYTELAIAAGFKGINFASC-VCNLYIMEFF 359 (360)
Q Consensus 322 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 359 (360)
...+++.+++++.||+.+++... .+...++.++
T Consensus 241 -----~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -----DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 01345888999999997777543 3444455554
No 82
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=4e-10 Score=97.05 Aligned_cols=105 Identities=14% Similarity=0.185 Sum_probs=78.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEecCCCCC---------CCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES---------VPE- 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~~- 255 (360)
++.+.+..++++.+|||||||+|.++..+++.. +..+++++|+.++. ..++++++.+|+.+. .+.
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 344444424567899999999999999999987 45789999984432 235799999999873 333
Q ss_pred C-cEEEeccccccCChhH---------HHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 G-DAILMKWILHCWDDDH---------CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~---------~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
. |+|++..+.+..+... ...+|+.+++.|||||++++..+
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 2 9999987776544321 24689999999999999999764
No 83
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.18 E-value=4.8e-11 Score=101.83 Aligned_cols=99 Identities=15% Similarity=0.245 Sum_probs=76.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C---CCCC--cEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S---VPEG--DAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~---~~~~--D~i~~~~ 263 (360)
...++||||||+|.++..+++.+|+..++++|+ +.+++.++++ .+++++.+|+.+ . .+.+ |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 7787776532 579999999975 2 3443 8888765
Q ss_pred ccccCChhH------HHHHHHHHHHhCCCCcEEEEEee
Q 018145 264 ILHCWDDDH------CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 264 vlh~~~~~~------~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
..++..... ...+++.++++|||||.|++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 544322110 14689999999999999998663
No 84
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.18 E-value=4.4e-10 Score=92.37 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=82.2
Q ss_pred HhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---CCCCcE
Q 018145 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPEGDA 258 (360)
Q Consensus 189 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~~~~D~ 258 (360)
+..+. +.++.+++|||||+|..+.+++...|..+++.+|. ++.++..+++ ++++++.+|+-+. .++.|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 34455 67889999999999999999999999999999997 6666655442 7899999998773 333499
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|++...- ....+|+.+...|||||+|++.-..
T Consensus 106 iFIGGg~------~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 106 IFIGGGG------NIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEECCCC------CHHHHHHHHHHHcCcCCeEEEEeec
Confidence 9998762 3457899999999999999985543
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=1.6e-10 Score=99.48 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=76.1
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC-C-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-E- 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~-~- 255 (360)
.+++.+. ..++.+|||||||+|..+..+++..+ ..+++++|. +.+++.++++ ++++++.+|..+..+ .
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 3444444 55678999999999999999988774 568899998 8888776542 358999999987433 2
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|+|++..++++++ +++.+.|+|||+|++..
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 39999998887655 35778999999998743
No 86
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.18 E-value=1.4e-09 Score=94.93 Aligned_cols=155 Identities=18% Similarity=0.225 Sum_probs=110.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCC--CeEEEecc-hhHHHhCCCC------CCc-EEEecCCCCC--C----CCCcEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY------AGV-EHVGGNMFES--V----PEGDAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~------~~v-~~~~~d~~~~--~----~~~D~i 259 (360)
..+.+||||.||+|.+....+..+|. .++...|. |.-++..++. ..+ +|..+|+++. . |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 67888887 6666665432 444 9999999982 2 233999
Q ss_pred EeccccccCChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC-----CccCCHHHHH
Q 018145 260 LMKWILHCWDDDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG-----GRERTKKEYT 333 (360)
Q Consensus 260 ~~~~vlh~~~~~~-~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e~~ 333 (360)
+.+..+..++|.+ +...|+.+++++.|||+|+...--+.+ ..+. +......+ .+ .+.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP-----Qle~----IAr~LtsH-r~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP-----QLEM----IARVLTSH-RDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc-----chHH----HHHHHhcc-cCCCceEEEecCHHHHH
Confidence 9999999999877 445799999999999999875532221 1111 11111111 12 2568999999
Q ss_pred HHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 334 ELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
+|++++||+-++..-.+ +-+.|..++|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999966654443 4455655543
No 87
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.18 E-value=1.1e-10 Score=105.15 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=74.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCC---eEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEeccccccC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQI---KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 268 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~ 268 (360)
+..+|||||||+|.++..+++.+|.. .++++|+ +.+++.|++. +++.+..+|..+ +++.+ |+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45789999999999999999988753 6899999 8888887654 679999999887 66654 99987543
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+ ..+++++++|||||+++++.+.
T Consensus 161 ~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 1 2367899999999999998653
No 88
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.17 E-value=4.8e-10 Score=95.74 Aligned_cols=142 Identities=17% Similarity=0.173 Sum_probs=92.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC---CCCC--CcEEEeccccccCCh
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPE--GDAILMKWILHCWDD 270 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~--~D~i~~~~vlh~~~~ 270 (360)
++.+|||||||+|.++..+++.. ...++++|+ +.+++.++. .+++++.+|+.+ +.+. .|+|++++++||+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 45799999999999998887663 567788998 778877754 468899998865 2333 299999999999875
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHH--------hh-hcCCCccCCHHHHHHHHHHcCC
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL--------MT-RDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~t~~e~~~ll~~aGf 341 (360)
...+|+++.+.++ .+++.-+.... ..........-.+ .. ........+.+++.++++++||
T Consensus 91 --~~~~l~e~~r~~~---~~ii~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 91 --PEEILDEMLRVGR---HAIVSFPNFGY-----WRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred --HHHHHHHHHHhCC---eEEEEcCChhH-----HHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 4568888887655 33333211100 0000000000000 00 0012345689999999999999
Q ss_pred ceeeEEecC
Q 018145 342 KGINFASCV 350 (360)
Q Consensus 342 ~~~~~~~~~ 350 (360)
++++....+
T Consensus 161 ~v~~~~~~~ 169 (194)
T TIGR02081 161 RILDRAAFD 169 (194)
T ss_pred EEEEEEEec
Confidence 998876553
No 89
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.15 E-value=3.1e-10 Score=98.10 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=77.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC-CC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV-PE- 255 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~-~~- 255 (360)
..++..+. ..++.+|||||||+|..+..+++.. ++.+++++|. +.+++.++++ .+++++.+|..... +.
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34555555 6778999999999999999888875 4578999998 8888877653 57999999988733 32
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|+|++...+++.+ +.+.+.|||||++++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 39999987776543 35677899999998853
No 90
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.13 E-value=8.2e-10 Score=98.07 Aligned_cols=120 Identities=19% Similarity=0.229 Sum_probs=85.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CC----cEEEecCCCCCCCCCcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AG----VEHVGGNMFESVPEGDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~----v~~~~~d~~~~~~~~D~i~~~~vlh~ 267 (360)
.++.+|||||||+|.++..+++..+ .+++++|+ |.+++.++++ .+ +.+..+|. ..|+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 4568999999999999988776544 36888888 8888877653 22 23322221 3499987533
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
.+....+++.+.+.|||||++++...... ..+++.+.+++.||+++++.
T Consensus 189 --~~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 189 --ANPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 23456789999999999999998754211 24567889999999999887
Q ss_pred ecCCceeE
Q 018145 348 SCVCNLYI 355 (360)
Q Consensus 348 ~~~~~~~v 355 (360)
...+-..+
T Consensus 238 ~~~~W~~~ 245 (250)
T PRK00517 238 ERGEWVAL 245 (250)
T ss_pred EeCCEEEE
Confidence 76544443
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.10 E-value=1e-09 Score=94.02 Aligned_cols=97 Identities=13% Similarity=0.211 Sum_probs=74.9
Q ss_pred hhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---CCC-C
Q 018145 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPE-G 256 (360)
Q Consensus 190 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~~~-~ 256 (360)
..+. ..++.+|||+|||+|.++..+++.. +..+++++|. +.+++.++++ +++.++.+|+.+. .+. .
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 3344 5677899999999999999998864 6678999998 8888866532 4688999998762 222 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
|.|++... ......+++.+.+.|||||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99998542 23456789999999999999986
No 92
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.10 E-value=1e-09 Score=90.82 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=97.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC---CCCCC--cEEEeccccccCC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAILMKWILHCWD 269 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~~--D~i~~~~vlh~~~ 269 (360)
+++.||||+|||.|.+...|.+. .++++.++++ ++-+..+.+ .++.++.+|+.+ .+|+. |.|+++.+|.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 46799999999999999887775 6899999988 555555543 568999999987 35654 9999999999876
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHH----Hhh---------hcCCCccCCHHHHHHHH
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL----LMT---------RDGGGRERTKKEYTELA 336 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~----~~~---------~~~~~~~~t~~e~~~ll 336 (360)
. ..++|+++.|+ |.+.++.=+-.. .+..-+.+. |.. -+++-+..|..+++++.
T Consensus 90 ~--P~~vL~EmlRV---gr~~IVsFPNFg---------~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 90 R--PDEVLEEMLRV---GRRAIVSFPNFG---------HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred H--HHHHHHHHHHh---cCeEEEEecChH---------HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence 4 35677776554 555555322110 111111111 000 02344556899999999
Q ss_pred HHcCCceeeEEecCCc
Q 018145 337 IAAGFKGINFASCVCN 352 (360)
Q Consensus 337 ~~aGf~~~~~~~~~~~ 352 (360)
++.|+++++.....+.
T Consensus 156 ~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 156 RELGIRIEERVFLDGG 171 (193)
T ss_pred HHCCCEEEEEEEEcCC
Confidence 9999999998877643
No 93
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.09 E-value=5.7e-10 Score=103.23 Aligned_cols=107 Identities=13% Similarity=0.281 Sum_probs=80.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------CCCcEEEecCCCC---CCCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~~~ 256 (360)
.+++.+. ......+||||||+|.++..+++.+|+..++++|+ +.+++.+.+ ..+|.++.+|+.. .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 3444444 23456999999999999999999999999999998 677666543 2579999999854 35544
Q ss_pred --cEEEeccccccCChh-H----HHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 --DAILMKWILHCWDDD-H----CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~-~----~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|.|++.+... |+.. . ...+|+.++++|+|||.+.+..-
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9998865443 2211 1 14789999999999999999664
No 94
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.09 E-value=7e-10 Score=96.28 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=75.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC--C-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP--E- 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~--~- 255 (360)
.+++.+. .+++.+|||||||+|.++..+++..+ +.+++++|. +.+++.++++ .+++++.+|..+..+ .
T Consensus 68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence 4444454 66788999999999999999998865 467888887 8888877643 579999999987322 2
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
.|+|++....++. .+.+.+.|+|||++++.
T Consensus 147 fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 147 YDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 3999988765543 34578899999999884
No 95
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.09 E-value=2.4e-09 Score=91.30 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=112.2
Q ss_pred hhhhccCccHHHHHHHHHhhcch----hhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHh
Q 018145 160 FEYASGNPRFNETYHEAMFNHST----IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD 235 (360)
Q Consensus 160 ~~~~~~~~~~~~~~~~~m~~~~~----~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 235 (360)
++.+..+|.....|+...+.... ...+.|++.+...++...|.|+|||.+.++.. ....+.-+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA---- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc-----cccceeeeeeec----
Confidence 45566788877777776654332 24566777766455678999999999998861 123455566421
Q ss_pred CCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh
Q 018145 236 APSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312 (360)
Q Consensus 236 a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~ 312 (360)
.+-+++..|+.+ |.++. |+++++..|.. .+...+++.++|.|+|||.++|.|....
T Consensus 210 ----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SR-------------- 268 (325)
T KOG3045|consen 210 ----VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSR-------------- 268 (325)
T ss_pred ----CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhh--------------
Confidence 234677889988 66654 99998887763 3567899999999999999999996321
Q ss_pred hhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 313 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.-+...+.+.|...||.+........+..+.++.|
T Consensus 269 -------------f~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 269 -------------FSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred -------------cccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 11233477888999999888877777777777765
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.08 E-value=7.1e-10 Score=94.85 Aligned_cols=101 Identities=17% Similarity=0.252 Sum_probs=77.6
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC---CCCC-C
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVPE-G 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~---~~~~-~ 256 (360)
++..++ ..++.+|||+|||+|.++..+++..|+.+++++|. |.+++.++++ .+++++.+|+.+ .... .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 344444 56678999999999999999998888899999998 8888877542 468999999865 2222 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|.+++.. ......+++++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6665422 12456889999999999999999875
No 97
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.07 E-value=5.6e-10 Score=100.76 Aligned_cols=96 Identities=23% Similarity=0.349 Sum_probs=75.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC-C-cEEEecc---
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKW--- 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~-~-D~i~~~~--- 263 (360)
++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+++..+. . |+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 8888877653 4699999999876554 3 9999851
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 018145 264 ----------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 264 ----------vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+++.|. +....+++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122111 1236789999999999999875
No 98
>PHA03411 putative methyltransferase; Provisional
Probab=99.07 E-value=1.8e-09 Score=94.91 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=92.1
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCC-CCC-cEEEeccccccCChhH-
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESV-PEG-DAILMKWILHCWDDDH- 272 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~-~~~-D~i~~~~vlh~~~~~~- 272 (360)
..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++. ++++++.+|+.+.. +.. |+|+++--+++.+..+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46999999999999999988887789999999 8899888764 67999999998833 333 9999988887765432
Q ss_pred -----------------HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 273 -----------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 273 -----------------~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
..+.++.+...|+|+|.+++. ....+ .+ ....+.++++++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~~----------~y----------~~sl~~~~y~~~ 201 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGRP----------YY----------DGTMKSNKYLKW 201 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eeccc----------cc----------cccCCHHHHHHH
Confidence 235677778888999977766 11110 01 112368899999
Q ss_pred HHHcCCc
Q 018145 336 AIAAGFK 342 (360)
Q Consensus 336 l~~aGf~ 342 (360)
++++||.
T Consensus 202 l~~~g~~ 208 (279)
T PHA03411 202 SKQTGLV 208 (279)
T ss_pred HHhcCcE
Confidence 9999986
No 99
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.06 E-value=1.4e-09 Score=98.51 Aligned_cols=94 Identities=19% Similarity=0.326 Sum_probs=75.5
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC-C-cEEEec------
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMK------ 262 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~-~-D~i~~~------ 262 (360)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ .+++++.+|++++.+. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999998 8888877652 3599999999886654 3 999885
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 018145 263 -------WILHCWDD----------DHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 263 -------~vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli 292 (360)
.++++-|. +....+++.+.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23333221 1456789999999999998865
No 100
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.06 E-value=5.2e-09 Score=97.50 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=93.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCC-C--CcEEEeccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVP-E--GDAILMKWILH 266 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~-~--~D~i~~~~vlh 266 (360)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ .+++++.+|+++ ..+ . .|+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446999999999999999999999999999999 8898887653 369999999976 333 2 29999843211
Q ss_pred cCC-----------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC
Q 018145 267 CWD-----------------------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 323 (360)
Q Consensus 267 ~~~-----------------------~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (360)
.-+ -+-..++++.+.+.|+|||++++ |...+
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~~------------------------- 384 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGFD------------------------- 384 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECcc-------------------------
Confidence 000 01234677788889999998764 32110
Q ss_pred CccCCHHHHHHHHHHcCCceeeEEecCC-ceeEEEE
Q 018145 324 GRERTKKEYTELAIAAGFKGINFASCVC-NLYIMEF 358 (360)
Q Consensus 324 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~ 358 (360)
..+.+.+++++.||+.+++...-. ..-++.+
T Consensus 385 ----Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 385 ----QGAAVRGVLAENGFSGVETLPDLAGLDRVTLG 416 (423)
T ss_pred ----HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEE
Confidence 234678888999999888876653 3445443
No 101
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.04 E-value=3.1e-09 Score=92.07 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=80.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C--CCC--CcEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S--VPE--GDAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~--~~~--~D~i~~ 261 (360)
.....+|||+|||+|..+..++++++.++++++++ +.+.+.|++. +||+++++|+.+ . .+. .|+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44579999999999999999999999999999999 7788877653 689999999987 2 222 399999
Q ss_pred ccccccCChh----------------HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 KWILHCWDDD----------------HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ~~vlh~~~~~----------------~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+=-.+.-++. ....+++.+.+.|||||++.++-+
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 6544432221 356889999999999999999764
No 102
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=9.9e-10 Score=100.09 Aligned_cols=95 Identities=21% Similarity=0.310 Sum_probs=75.2
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEecc----
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKW---- 263 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~i~~~~---- 263 (360)
+.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+++..+. .|+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 36899999999999999999999999999999 8888877653 4699999999875553 39999851
Q ss_pred ---------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 018145 264 ---------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 264 ---------vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+++.|. +....+++.+.+.|+|||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122221 2246789999999999999886
No 103
>PRK04457 spermidine synthase; Provisional
Probab=99.02 E-value=7.9e-10 Score=98.56 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=77.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC---CCCCC-cEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPEG-DAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~---~~~~~-D~i~~~~ 263 (360)
+++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.|++. ++++++.+|..+ ..++. |+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999999999999999999 9999887642 679999999865 23333 9998742
Q ss_pred cccc--CChh-HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 264 ILHC--WDDD-HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 264 vlh~--~~~~-~~~~~L~~i~~~LkpgG~lli~e 294 (360)
++. .+.. ....+++.+++.|+|||++++.-
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 221 1111 12589999999999999999853
No 104
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.01 E-value=5e-09 Score=94.93 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=69.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC-CcEEEeccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-GDAILMKWILH 266 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~-~D~i~~~~vlh 266 (360)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .++.+...+.....+. .|+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 34689999999999999887764 4568899998 8888877653 3456666653332233 3999986543
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+....++.++++.|||||++++...
T Consensus 236 ----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2456789999999999999998764
No 105
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.00 E-value=5.2e-09 Score=88.88 Aligned_cols=103 Identities=15% Similarity=0.252 Sum_probs=73.9
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEecCCCCC---------CCC-C
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES---------VPE-G 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~~-~ 256 (360)
+.+.+....++.+|||+|||+|.++..+++.+ +..+++++|+.+.. ..++++++.+|+.++ .+. .
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 33444435678899999999999999999887 56789999983322 235789999998762 233 3
Q ss_pred -cEEEeccccc---cCCh------hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 257 -DAILMKWILH---CWDD------DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 257 -D~i~~~~vlh---~~~~------~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|+|++....| .|.. +....+|+.+++.|+|||++++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999854322 1111 123678999999999999999864
No 106
>PRK14967 putative methyltransferase; Provisional
Probab=99.00 E-value=9.9e-09 Score=89.61 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=73.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCC-C-cEEEeccccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G-DAILMKWILH 266 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~-~-D~i~~~~vlh 266 (360)
..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+..+. . |+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455689999999999999988876 3457889998 7788766542 2478889998775443 3 9999863322
Q ss_pred cCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 267 CWDD-------------------DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 267 ~~~~-------------------~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.-+. .....+++++.+.|||||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 1111 114568899999999999999876543
No 107
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.00 E-value=1.3e-08 Score=90.13 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=73.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCCCCC----CC-cEEEecccc--
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFESVP----EG-DAILMKWIL-- 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~~~~----~~-D~i~~~~vl-- 265 (360)
++.+|||+|||+|.++..+++..|..+++++|. +.+++.++++ .+++++.+|+++..+ .. |+|+++--.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999999999999999998 8888887653 347899999887432 23 999875321
Q ss_pred ----ccCChh------------------HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 266 ----HCWDDD------------------HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 266 ----h~~~~~------------------~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+..+++ -...+++.+.+.|+|||++++..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111111 13478888999999999998653
No 108
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.99 E-value=7e-09 Score=89.49 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=83.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------------------CCCcEEEecCCCC-CC-C
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFE-SV-P 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~-~ 254 (360)
.++.+||+.|||.|.-+..|++. +.+++++|+ +..++.+.+ ..+|++..+|+++ +. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 45689999999999999999887 556999998 777776421 1478999999998 32 1
Q ss_pred ----CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 255 ----EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 255 ----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..|+|+-..+|++++++...+..+++.++|+|||+++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 1299999999999999999999999999999999999987643
No 109
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.99 E-value=7.4e-09 Score=89.45 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=98.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC---C---------------CCCcEEEecCCCC-CCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---S---------------YAGVEHVGGNMFE-SVP 254 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~~v~~~~~d~~~-~~~ 254 (360)
..++.+||+.|||.|.-+..|++. +.+++++|+ +.+++.+. . ..+|++..+|+++ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456789999999999999999987 568999999 77777651 1 1368999999999 322
Q ss_pred C---CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHH
Q 018145 255 E---GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 331 (360)
Q Consensus 255 ~---~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 331 (360)
. .|+|+=..+|+.++++.+.+..++++++|+|||+++++....+.... .+.....+.++
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~------------------~GPPf~v~~~e 174 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM------------------EGPPFSVTEEE 174 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS------------------SSSS----HHH
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC------------------CCcCCCCCHHH
Confidence 2 29999999999999999999999999999999996666554432110 00111237889
Q ss_pred HHHHHHHcCCceeeEEe
Q 018145 332 YTELAIAAGFKGINFAS 348 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~ 348 (360)
+.++|. .+|++..+..
T Consensus 175 v~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 175 VRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHT-TTEEEEEEEE
T ss_pred HHHHhc-CCcEEEEEec
Confidence 999999 7888776653
No 110
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.98 E-value=4.2e-09 Score=79.37 Aligned_cols=92 Identities=24% Similarity=0.329 Sum_probs=74.8
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC------CCCCcEEEecCCCCCC---CCC-cEEEeccccccC
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------SYAGVEHVGGNMFESV---PEG-DAILMKWILHCW 268 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~~~---~~~-D~i~~~~vlh~~ 268 (360)
+|+|+|||.|..+..+++ .+..+++++|. +..+..++ ...++++..+|+.+.. +.. |+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67788999998 66655544 1257899999998832 233 999999999875
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
.+....+++.+.+.|+|||++++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 456788999999999999999875
No 111
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.98 E-value=3.3e-09 Score=85.85 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=92.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC-C-CCC-cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES-V-PEG-DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~-~-~~~-D~i~~~~vl 265 (360)
...+|||+|||+|.++..|++..-....+++|. +.+++.|+.. +.|+|...|+.++ + +.. |+|+-...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 334999999999999999999875556788887 7777766542 3499999999984 3 223 888655444
Q ss_pred ccC------ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 266 HCW------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 266 h~~------~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
..+ +.......+..+.+.|+|||.++|.-- -.|.+|+.+.++.-
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENF 196 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcC
Confidence 322 222335678999999999999988431 12688899999999
Q ss_pred CCceeeEEecC
Q 018145 340 GFKGINFASCV 350 (360)
Q Consensus 340 Gf~~~~~~~~~ 350 (360)
||.....++.+
T Consensus 197 ~f~~~~tvp~p 207 (227)
T KOG1271|consen 197 NFEYLSTVPTP 207 (227)
T ss_pred CeEEEEeeccc
Confidence 99999888876
No 112
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.97 E-value=8.5e-09 Score=100.30 Aligned_cols=125 Identities=16% Similarity=0.236 Sum_probs=91.7
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEecc----
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKW---- 263 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~i~~~~---- 263 (360)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+++..+. .|+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 8888877653 4789999998875543 39999832
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC
Q 018145 264 ----------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 323 (360)
Q Consensus 264 ----------vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (360)
+..+.|. +....+++.+.+.|+|||++++ |... .
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-~------------------------ 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-K------------------------ 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC-c------------------------
Confidence 1111110 1234678899999999999876 4211 0
Q ss_pred CccCCHHHHHHHHHHcCCceeeEEecCCc
Q 018145 324 GRERTKKEYTELAIAAGFKGINFASCVCN 352 (360)
Q Consensus 324 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 352 (360)
..+.+.+++.+.||..+++...-.+
T Consensus 273 ----q~~~v~~~~~~~g~~~~~~~~D~~g 297 (506)
T PRK01544 273 ----QEEAVTQIFLDHGYNIESVYKDLQG 297 (506)
T ss_pred ----hHHHHHHHHHhcCCCceEEEecCCC
Confidence 2345677888899988887765433
No 113
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.94 E-value=1e-09 Score=85.62 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=75.4
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C--CCCC--cEEEeccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S--VPEG--DAILMKWI 264 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~--~~~~--D~i~~~~v 264 (360)
+.+|||+|||+|.++..+++.. ..+++++|+ |..++.++.. .+++++.+|+.+ . .+.. |+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 3689999999999999999998 788888888 8887766542 579999999987 3 4433 99999766
Q ss_pred cccCCh------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 265 LHCWDD------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 265 lh~~~~------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+.... +....+++++.+.|||||.++++-+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 654221 1346889999999999999998753
No 114
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.93 E-value=1.5e-08 Score=93.68 Aligned_cols=99 Identities=16% Similarity=0.072 Sum_probs=73.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCC-C-cEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPE-G-DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~-~-D~i~~~~v 264 (360)
.+++.+|||+|||+|.++.+.+.. ..+++++|+ +.+++.++.+ ..+++..+|+.+ +.+. . |+|++.--
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 567789999999999998876553 677888898 8888766542 347899999988 5543 3 99998421
Q ss_pred c------c-cCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 265 L------H-CWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 265 l------h-~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
. . +...+-...+|+.+++.|||||+++++.+
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 1 1 11112346899999999999999998754
No 115
>PRK00811 spermidine synthase; Provisional
Probab=98.92 E-value=4.5e-09 Score=94.86 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------CCCcEEEecCCCCC--CCC--CcEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES--VPE--GDAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~--~~~--~D~i 259 (360)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|.... .+. .|+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999998655568888888 888888764 25799999998762 222 3999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 018145 260 LMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 260 ~~~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~ 293 (360)
++-..-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433322221 257899999999999998874
No 116
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.92 E-value=4.1e-09 Score=89.25 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=69.6
Q ss_pred CcceEEEEcCCcch----HHHHHHhhC----C-CCeEEEecc-hhHHHhCCCC---------------------------
Q 018145 197 NVERLVDVGGGFGV----TLSMITSKY----P-QIKAVNFDL-PHVVQDAPSY--------------------------- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~----~~~~l~~~~----p-~~~~~~~D~-~~~~~~a~~~--------------------------- 239 (360)
++.+|...||++|. ++..+.+.. + +.++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999994 333344411 2 467888888 8888887541
Q ss_pred -------CCcEEEecCCCC-CCCC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 240 -------AGVEHVGGNMFE-SVPE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 240 -------~~v~~~~~d~~~-~~~~-~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+|+|...|..+ +.+. . |+|+|.+||-+++++...+++++++++|+|||+|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 358999999998 3333 3 99999999999999999999999999999999999955
No 117
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.91 E-value=1.8e-08 Score=90.18 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=77.0
Q ss_pred CcceEEEEcCCcch----HHHHHHhhCC----CCeEEEecc-hhHHHhCCCC----------------------------
Q 018145 197 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 239 (360)
+..+|...||+||. ++..+.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35899999999993 3444444332 467888888 7888876531
Q ss_pred ---------CCcEEEecCCCC-CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 240 ---------AGVEHVGGNMFE-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 240 ---------~~v~~~~~d~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+|+|..+|..+ +.| .. |+|+|.++|.+++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 247899999988 443 33 99999999999999999999999999999999988754
No 118
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=5.6e-09 Score=88.37 Aligned_cols=143 Identities=16% Similarity=0.222 Sum_probs=91.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCC---------------------------------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA--------------------------------- 240 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--------------------------------- 240 (360)
+..+..+|||||.+|.++..+++.+....++++|+ +..++.|++.-
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55678999999999999999999998888999999 88888886530
Q ss_pred --------Cc-------EEEecCCCC-CCCCCcEEEecc----ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 018145 241 --------GV-------EHVGGNMFE-SVPEGDAILMKW----ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 300 (360)
Q Consensus 241 --------~v-------~~~~~d~~~-~~~~~D~i~~~~----vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~ 300 (360)
++ .+...|+.. ..++.|+|+|-+ +=-+|.|+....+++++++.|.|||+|++ |+-.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-EPQp--- 211 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-EPQP--- 211 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-cCCc---
Confidence 11 112223332 233448987633 32347899999999999999999998875 4321
Q ss_pred CCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc--CCceee
Q 018145 301 PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA--GFKGIN 345 (360)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a--Gf~~~~ 345 (360)
...+........ ......-......+....++.+. ||+.+.
T Consensus 212 --WksY~kaar~~e--~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 212 --WKSYKKAARRSE--KLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred --hHHHHHHHHHHH--HhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 111111111111 11111122344678888888887 555433
No 119
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.90 E-value=1.1e-08 Score=88.72 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=72.9
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC---C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE---G 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~---~ 256 (360)
.++..+. ..++.+|||||||+|..+..+++... +++++|. +.+++.++++ .+++++.+|..+..+. .
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 3344444 56778999999999999987777653 6788887 7777766542 4689999998774332 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998776654 3456789999999998653
No 120
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.4e-08 Score=88.90 Aligned_cols=126 Identities=22% Similarity=0.283 Sum_probs=87.9
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcE----EEecCCCCCCC--CC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVE----HVGGNMFESVP--EG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~----~~~~d~~~~~~--~~ 256 (360)
++++.+. .++.+|||+|||+|.++++.++-. ..+++++|+ |.+++.++.+ ++|. ....+...... ..
T Consensus 154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~ 230 (300)
T COG2264 154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPF 230 (300)
T ss_pred HHHHHhh--cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcc
Confidence 3444443 478999999999999999877754 456777777 8888888764 4454 22222222112 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|+++ +|- +-...+...+++.+||||++++.-.... ..+.+.+.+
T Consensus 231 DvIVAN-ILA----~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~ 276 (300)
T COG2264 231 DVIVAN-ILA----EVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAY 276 (300)
T ss_pred cEEEeh-hhH----HHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHH
Confidence 999885 342 3466899999999999999998663221 245567888
Q ss_pred HHcCCceeeEEec
Q 018145 337 IAAGFKGINFASC 349 (360)
Q Consensus 337 ~~aGf~~~~~~~~ 349 (360)
.++||.++++...
T Consensus 277 ~~~gf~v~~~~~~ 289 (300)
T COG2264 277 EQAGFEVVEVLER 289 (300)
T ss_pred HhCCCeEeEEEec
Confidence 8999999988765
No 121
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.84 E-value=5.4e-09 Score=87.72 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=97.6
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcE-EEec---CCCCCC-C-CCcEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVE-HVGG---NMFESV-P-EGDAI 259 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~-~~~~---d~~~~~-~-~~D~i 259 (360)
+.+...+ ..+..++||+|||||-.+..+...-. +.+++|+ ..|++.|.++.-.+ +... +|..+. + ..|+|
T Consensus 116 emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 116 EMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred HHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccch
Confidence 3444444 34478999999999999888766543 3567787 89999998763211 1111 233322 2 23999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
....||.++. ....++-.+...|+|||.+.++-...+.... +...-. --...+..-+.++++..
T Consensus 193 ~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f~l~ps------~RyAH~~~YVr~~l~~~ 256 (287)
T COG4976 193 VAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGG--------FVLGPS------QRYAHSESYVRALLAAS 256 (287)
T ss_pred hhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCC--------eecchh------hhhccchHHHHHHHHhc
Confidence 9999999988 5678999999999999999997655544211 111000 00112556688999999
Q ss_pred CCceeeEEecC
Q 018145 340 GFKGINFASCV 350 (360)
Q Consensus 340 Gf~~~~~~~~~ 350 (360)
||+++++.+++
T Consensus 257 Gl~~i~~~~tt 267 (287)
T COG4976 257 GLEVIAIEDTT 267 (287)
T ss_pred CceEEEeeccc
Confidence 99999997664
No 122
>PLN02366 spermidine synthase
Probab=98.84 E-value=1.9e-08 Score=91.30 Aligned_cols=98 Identities=20% Similarity=0.204 Sum_probs=72.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCC---CCCC--CcEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVPE--GDAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~---~~~~--~D~i 259 (360)
+++.+||+||||.|..+..+++..+-.+++++|+ +.+++.+++. +|++++.+|... ..++ .|+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999987633357888888 7788877652 589999999864 2322 3999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCcEEEEE
Q 018145 260 LMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 260 ~~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~ 293 (360)
++-..-++.+.. -...+++.+++.|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 985443322211 1347899999999999998764
No 123
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.84 E-value=3e-08 Score=86.75 Aligned_cols=141 Identities=22% Similarity=0.355 Sum_probs=84.2
Q ss_pred CcceEEEEcCCc---chHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CC--cEEEecCCCCC---CC--C--C--c
Q 018145 197 NVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AG--VEHVGGNMFES---VP--E--G--D 257 (360)
Q Consensus 197 ~~~~vLDiG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~--v~~~~~d~~~~---~~--~--~--D 257 (360)
+...+||||||- |..-.-..+..|+.+++.+|. |-++.+++.. ++ ..++.+|+.++ +. + + |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 678999999993 343433445579999999998 8888887652 44 89999999983 22 1 1 3
Q ss_pred -----EEEeccccccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHH
Q 018145 258 -----AILMKWILHCWDD-DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 331 (360)
Q Consensus 258 -----~i~~~~vlh~~~~-~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 331 (360)
.+++..+||+++| ++...+++.++++|.||++|+|...+.+..+ . ........+... ......||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--~---~~~~~~~~~~~~-~~~~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--E---RAEALEAVYAQA-GSPGRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--H---HHHHHHHHHHHC-CS----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--H---HHHHHHHHHHcC-CCCceecCHHH
Confidence 7789999999987 6888999999999999999999998764321 1 111122222222 23567889999
Q ss_pred HHHHHHHcCCceee
Q 018145 332 YTELAIAAGFKGIN 345 (360)
Q Consensus 332 ~~~ll~~aGf~~~~ 345 (360)
+.++|. ||+.++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999998 777653
No 124
>PRK01581 speE spermidine synthase; Validated
Probab=98.80 E-value=2.1e-08 Score=91.66 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------------CCCcEEEecCCCCC---CCC-Cc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFES---VPE-GD 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~~---~~~-~D 257 (360)
.++.+||+||||+|..+..+++..+..+++.+|+ +.+++.|++ .+|++++.+|..+. .++ .|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4568999999999999999998666678888888 889998874 26899999999872 222 39
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 258 AILMKWILH---CWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 258 ~i~~~~vlh---~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+|++-..-. ....-....+++.+++.|+|||.+++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999863210 0111223578999999999999988763
No 125
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=5e-08 Score=82.14 Aligned_cols=98 Identities=16% Similarity=0.286 Sum_probs=77.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC-C--
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~-~-- 256 (360)
.++..+. ++++.+|||||||+|+.+.-+++--. +++.++. +...+.|+++ .+|.++.+|-..-+++ +
T Consensus 63 ~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 63 RMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCc
Confidence 4455555 78889999999999999998888765 7777776 7888887653 5699999999885554 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|.|+.....-..|. .+.+.|||||++++-.-
T Consensus 140 D~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 140 DRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99999888776653 45668999999999665
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.77 E-value=3.3e-08 Score=90.30 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=73.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC---C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---E 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~---~ 255 (360)
.+++.++ .+++.+|||||||+|.++..+++..+. .+++++|. +.+++.|++. +++.++.+|..+..+ .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 3444444 566789999999999999999998764 46888888 8887776542 468999999876322 2
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|+|++...+++.+ ..+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 39999986655432 34677899999998854
No 127
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.76 E-value=3.3e-08 Score=88.88 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=81.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~i~~~~vl 265 (360)
.++.+|||||||||-++...++.. ..+++++|+ |.+++.|+++ .++.+. . ..+.+. .|+|+.+- +
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI-~ 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANI-L 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES--
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECC-C
Confidence 456899999999999999877753 457888888 8888877653 344432 1 123322 39998753 2
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
.+-...++..+.+.|+|||+|++.-.... ..+++.+.+++ ||++++
T Consensus 235 ----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 235 ----ADVLLELAPDIASLLKPGGYLILSGILEE-----------------------------QEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp ----HHHHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHT-TEEEEE
T ss_pred ----HHHHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------HHHHHHHHHHC-CCEEEE
Confidence 23567889999999999999999765431 23456677776 999888
Q ss_pred EEecCC
Q 018145 346 FASCVC 351 (360)
Q Consensus 346 ~~~~~~ 351 (360)
....++
T Consensus 281 ~~~~~~ 286 (295)
T PF06325_consen 281 EREEGE 286 (295)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 876543
No 128
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.76 E-value=1.6e-07 Score=83.03 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=81.4
Q ss_pred CcceEEEEcCCcc----hHHHHHHhhCC-----CCeEEEecc-hhHHHhCCCC---------------------------
Q 018145 197 NVERLVDVGGGFG----VTLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY--------------------------- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G----~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 239 (360)
++-+|.-.||+|| .++..+.+.+| .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4789999999999 56667777775 467788888 8888887641
Q ss_pred --------CCcEEEecCCCCC--CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 240 --------AGVEHVGGNMFES--VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 240 --------~~v~~~~~d~~~~--~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..|.|..+|..++ .+.. |+|+|.+||-+++.+.-.+++++.+..|+|||.|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2388999999883 3444 99999999999998888999999999999999999954
No 129
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.7e-07 Score=82.95 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=88.1
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCCC-cEEEecc-----ccc
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMKW-----ILH 266 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~~-D~i~~~~-----vlh 266 (360)
+|||||||+|..+..++..+|+.+++++|+ |.+++.|+.+ .++.++.+|.+++.... |+|+++= -..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 8888877653 34667777888865544 8887731 100
Q ss_pred cCC------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCC
Q 018145 267 CWD------------------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 328 (360)
Q Consensus 267 ~~~------------------~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 328 (360)
+.. -+-..+++..+.+.|+|||.+++ |... . .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~-----------------------~------q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL-----------------------T------Q 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC-----------------------C------c
Confidence 010 12355788888999999777665 3211 1 2
Q ss_pred HHHHHHHHHHcC-CceeeEEecCCc
Q 018145 329 KKEYTELAIAAG-FKGINFASCVCN 352 (360)
Q Consensus 329 ~~e~~~ll~~aG-f~~~~~~~~~~~ 352 (360)
.+.+.+++.+.| |..+.+.....+
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCC
Confidence 456788999999 676666665543
No 130
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=5.3e-08 Score=83.80 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=86.1
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHh-hCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC-CC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES-VP 254 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~-~~ 254 (360)
...|+.... ..++.+|+|.|.|+|.++..|+. ..|..+++.++. ++..+.|+++ ++|++..+|+.+. .+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 345666665 88999999999999999999997 457789999998 7888877653 5699999999883 33
Q ss_pred CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 255 EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 255 ~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+. |+|++ +++++ -.+|.+++++|||||.+++.-++.+
T Consensus 162 ~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 34 99988 56655 4689999999999999999887653
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.75 E-value=2.7e-08 Score=89.39 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCC---CCC-CcEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFES---VPE-GDAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~---~~~-~D~i~ 260 (360)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++. ++++++.+|..+. .++ .|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999998776677888888 7787766542 5788888887651 223 39999
Q ss_pred eccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 018145 261 MKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 261 ~~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~ 293 (360)
+...-+.-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865533222222 457899999999999999986
No 132
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.72 E-value=1.2e-07 Score=82.01 Aligned_cols=144 Identities=18% Similarity=0.200 Sum_probs=92.4
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCCC-CcEEEeccccccCChhHHHH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPE-GDAILMKWILHCWDDDHCLR 275 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~-~D~i~~~~vlh~~~~~~~~~ 275 (360)
...++||||.|.|..+..++..+..+.+|-.. +.|...-++ .+++++..|-....+. .|+|.|.++|-.-. +...
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~--~P~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCD--RPLT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccC--CHHH
Confidence 45789999999999999999998886665555 777666554 3456555544433332 39999999997754 3468
Q ss_pred HHHHHHHhCCCCcEEEEEeeecCCC----CCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 276 ILKNCYKAVPGNGKVIVMNSIVPEI----PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 276 ~L~~i~~~LkpgG~lli~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
+|+.++++|+|+|++++.-..+-.. ....... ....++ ..+..-+-....+.+.|+.+||++++....|
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~-P~e~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNR-PSELLP-----VKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCC-chhhcC-----CCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 9999999999999999855332111 0000000 000111 1101111122334489999999999998776
No 133
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.71 E-value=5.9e-08 Score=82.39 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=68.0
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEe-------cCCCCCC--CCC-cEEEeccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVG-------GNMFESV--PEG-DAILMKWILH 266 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~d~~~~~--~~~-D~i~~~~vlh 266 (360)
...++|||||+|..++-++..+.+ +++.|. +.|++.++++++++... .++.+-. ++. |+|++..++|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 348999999999888888888766 566666 89999998876544333 2222211 233 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+++ ..++.+.++++|||.|.++.+-..
T Consensus 112 WFd---le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 112 WFD---LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hhc---hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 876 457899999999987744444333
No 134
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.69 E-value=2.5e-08 Score=85.43 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=73.2
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC-
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE- 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~- 255 (360)
...+++.+. ++++.+|||||||+|+.+..++.... ..+++.+|. +..++.|+++ .+|.++.+|.....+.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 345666666 78889999999999999998888753 446788887 8888887653 5799999998774443
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+ |.|++.......|. .+.+.|++||+|++--.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 2 99999888865442 35667999999998443
No 135
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.66 E-value=1.8e-08 Score=64.99 Aligned_cols=49 Identities=55% Similarity=0.792 Sum_probs=41.1
Q ss_pred HHHHHHHhhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHh
Q 018145 39 MATQAAIQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~ 87 (360)
.++++|++|||||.|++.| ++|++||+.++..++|.++..++|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4789999999999999975 999999999999436657778999999985
No 136
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.66 E-value=1.6e-07 Score=82.35 Aligned_cols=98 Identities=13% Similarity=0.199 Sum_probs=75.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC--------C-CC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV--------P-EG 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~--------~-~~ 256 (360)
..++.+|||||||+|..+..+++..| +.+++.+|. ++.++.|+++ ++++++.+|+.+.. . ..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999998875 679999998 7777777653 57999999997621 1 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+|++-. ..+.-..++..+.+.|+|||.+++-+..+
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 9998842 22344578999999999999887755444
No 137
>PRK03612 spermidine synthase; Provisional
Probab=98.66 E-value=9.3e-08 Score=93.56 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=74.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-------------CCcEEEecCCCCC---CCCC-
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFES---VPEG- 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~~---~~~~- 256 (360)
+++.+|||||||+|..+..+++. |. .+++.+|+ |++++.++++ +|++++.+|..+. .++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45789999999999999999974 55 68899998 9999988761 5899999998772 2333
Q ss_pred cEEEeccccccCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 257 DAILMKWILHCWDDD---HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 257 D~i~~~~vlh~~~~~---~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|+|++...-...+.. -..++++.+++.|||||.+++.-
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999986433221111 12368999999999999988754
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.65 E-value=9.4e-08 Score=79.68 Aligned_cols=103 Identities=9% Similarity=0.233 Sum_probs=69.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
+.+++.+. ..++.+|||||||+|.++..++++ ..+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 34555555 566789999999999999999998 467788887 7777766543 579999999998 55543 8
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|+++--. +.+.+...++++.. .+.++|.+++..
T Consensus 80 ~vi~n~Py-~~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 80 KVVGNLPY-NISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred EEEECCCc-ccHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 88765444 34433333343321 134667766544
No 139
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=1.8e-07 Score=89.51 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=79.3
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCC---CC-C-C
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VP-E-G 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~---~~-~-~ 256 (360)
++..++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.++++ .+++++.+|+.+. .+ . .
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 334444 56678999999999999999999988788999998 8888777543 2478999998762 22 2 3
Q ss_pred cEEEe----cc--cccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 DAILM----KW--ILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 D~i~~----~~--vlh~-------~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|.|++ +. ++.+ ...++ ..++|+++.+.|||||++++.+...
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99984 21 1211 12222 2478999999999999999888544
No 140
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.60 E-value=2.1e-07 Score=89.17 Aligned_cols=111 Identities=21% Similarity=0.213 Sum_probs=80.1
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C-CcEEEecCCCC-CC--C-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFE-SV--P- 254 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~d~~~-~~--~- 254 (360)
.++..++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.++++ . ++.+..+|... +. +
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 3444454 56678999999999999999999888788999998 7777766542 1 23446677655 22 2
Q ss_pred C-CcEEEe------ccccccCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 255 E-GDAILM------KWILHCWDD-------DH-------CLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 255 ~-~D~i~~------~~vlh~~~~-------~~-------~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
. .|.|++ ..+++..|+ ++ -.++|+++.+.|||||+|+..+....
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 399985 345665443 11 25799999999999999999887664
No 141
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.57 E-value=1.4e-07 Score=78.97 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=72.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC--CCCCC--cEEEeccccccC--
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE--SVPEG--DAILMKWILHCW-- 268 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~~~~--D~i~~~~vlh~~-- 268 (360)
.+.-|||||||+|-.+..+... ....+++|+ |.|++.|.+. -.-+++.+|+-+ +++.+ |.+++...++++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 4789999999999888777665 477899999 9999998752 113588888877 55555 888776665543
Q ss_pred -------ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 269 -------DDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 269 -------~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|......++..++..|++|++.++.=
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 33445577899999999999988743
No 142
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=3.3e-07 Score=88.34 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=77.1
Q ss_pred hhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---CCC-Cc
Q 018145 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPE-GD 257 (360)
Q Consensus 190 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~~~-~D 257 (360)
..+. ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+|+++.+|+.+. ++. .|
T Consensus 244 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 244 PALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 3444 5567899999999999999999986 6789999998 7777766542 3589999998762 333 39
Q ss_pred EEEecc------cccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 258 AILMKW------ILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 258 ~i~~~~------vlh~-------~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+|++.- ++.+ ++..+ ...+|+.+.+.|||||+|+......
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 998631 1211 11122 2468999999999999998766443
No 143
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=3.6e-07 Score=87.99 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=76.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-C-CcEEEec--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-GDAILMK-- 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~-~D~i~~~-- 262 (360)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+|+++.+|+.+..+ . .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 45668999999999999998888764 468999998 8888776543 458999999877323 2 3999851
Q ss_pred ----ccc-------ccCChhHH-------HHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 263 ----WIL-------HCWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 263 ----~vl-------h~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.++ ++++++++ .++|.++.+.|||||+|+..+....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 122 12333332 3689999999999999999886553
No 144
>PHA03412 putative methyltransferase; Provisional
Probab=98.56 E-value=3.7e-07 Score=78.67 Aligned_cols=92 Identities=8% Similarity=0.039 Sum_probs=69.1
Q ss_pred cceEEEEcCCcchHHHHHHhhC---CCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC-cEEEeccccccCCh
Q 018145 198 VERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMKWILHCWDD 270 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~~ 270 (360)
..+|||+|||+|.++..+++.. +..+++++|+ +.+++.|++. .++.++.+|+.. +.+.. |+|+++=-++....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998875 3568888888 8899988765 679999999987 44333 99998644442211
Q ss_pred ----------hHHHHHHHHHHHhCCCCcE
Q 018145 271 ----------DHCLRILKNCYKAVPGNGK 289 (360)
Q Consensus 271 ----------~~~~~~L~~i~~~LkpgG~ 289 (360)
.-...+++++.++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1244689999997777663
No 145
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.55 E-value=2e-07 Score=81.55 Aligned_cols=126 Identities=15% Similarity=0.255 Sum_probs=89.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCC--
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP-- 254 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~-- 254 (360)
.|+..++ ..++.+|||.|.|+|.++..|++. .|..++.-+|. ++..+.|++. .+|++...|+.+ .++
T Consensus 31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4566666 888999999999999999999975 58889999998 7777766542 579999999965 332
Q ss_pred --CC-cEEEeccccccCChhHHHHHHHHHHHhC-CCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHH
Q 018145 255 --EG-DAILMKWILHCWDDDHCLRILKNCYKAV-PGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 330 (360)
Q Consensus 255 --~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~L-kpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 330 (360)
.. |.|++ ++|++. ..+..+.++| ||||++++.-++... ..
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~ 153 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQ 153 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HH
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HH
Confidence 23 99887 566554 5799999999 899999987765421 11
Q ss_pred HHHHHHHHcCCceeeEEec
Q 018145 331 EYTELAIAAGFKGINFASC 349 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~ 349 (360)
...+.|++.||..++++.+
T Consensus 154 ~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 154 KTVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCeeeEEEEE
Confidence 2345667789988887665
No 146
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.55 E-value=1.5e-07 Score=80.11 Aligned_cols=97 Identities=19% Similarity=0.298 Sum_probs=69.1
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------CCCcEEEecCCCCC----CCCC--cEEEecccc
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES----VPEG--DAILMKWIL 265 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~~~~--D~i~~~~vl 265 (360)
..+||||||.|.++..+++.+|+..++++|. ...+..+.. ..++.++.+|+..- ++++ |-|++.+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 3899999999999999999999999999998 555554432 37899999998871 3433 777664322
Q ss_pred ccCChhH------HHHHHHHHHHhCCCCcEEEEEee
Q 018145 266 HCWDDDH------CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 266 h~~~~~~------~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
-+..... ...+|..+++.|+|||.|.+..-
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 2111111 24789999999999999988663
No 147
>PLN02672 methionine S-methyltransferase
Probab=98.53 E-value=8.8e-07 Score=91.97 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=53.3
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------------------CCcEEEecCCCCCCC
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------------------AGVEHVGGNMFESVP 254 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~d~~~~~~ 254 (360)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+.+ +||+++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 8888766321 369999999988543
Q ss_pred C----CcEEEec
Q 018145 255 E----GDAILMK 262 (360)
Q Consensus 255 ~----~D~i~~~ 262 (360)
. .|+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 2 3888773
No 148
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=4.6e-07 Score=86.97 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=79.5
Q ss_pred HhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C----CCC
Q 018145 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S----VPE 255 (360)
Q Consensus 189 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~----~~~ 255 (360)
...+. ..++.+|||+|||+|..+..+++... ..+++++|. +.+++.++++ .+|+++.+|+.+ + ...
T Consensus 245 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 245 APLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 33344 56678999999999999999998864 468999998 7777766542 458999999876 3 112
Q ss_pred --CcEEEec------cccccCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 256 --GDAILMK------WILHCWDD-------DH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 256 --~D~i~~~------~vlh~~~~-------~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.|.|++- .++++.++ ++ -.++|+++.+.|||||+|+..+...
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3999862 45554443 11 2578999999999999999877544
No 149
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.48 E-value=1.2e-06 Score=70.27 Aligned_cols=109 Identities=17% Similarity=0.293 Sum_probs=86.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCC-CCCcEEEecCCCC-C--CC---CC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-S--VP---EG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~--~~---~~- 256 (360)
..++.++ +..+.-|||+|.|+|.++.+++++. ++-..+.++. ++......+ .+.+++++||.++ . .. ..
T Consensus 39 ~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 39 KMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred HHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCe
Confidence 3344444 6777899999999999999999976 4445555555 666665544 4889999999987 3 22 22
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|.|++.--+-.+|.....++|+.+...|++||.++-....
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9999999998999888999999999999999999988876
No 150
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.46 E-value=4.4e-07 Score=77.47 Aligned_cols=110 Identities=16% Similarity=0.275 Sum_probs=68.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC---------------CCCcEEEecCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNMF 250 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d~~ 250 (360)
.+++.+. +.+...++|||||.|......+-..+--+++++++ +...+.|.. ..++++..+|+.
T Consensus 33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 4555555 66788999999999999988887776666899987 555443321 246899999998
Q ss_pred C-C-----CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 018145 251 E-S-----VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 300 (360)
Q Consensus 251 ~-~-----~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~ 300 (360)
+ + +.++|+|++++... + ++...-|.+....||||.+++...+..+..
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred ccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 7 3 23569999998864 3 455566688888999999988776666543
No 151
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.46 E-value=6.5e-07 Score=82.17 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=71.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------------C----CcEEEecCCCCC-----C-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------A----GVEHVGGNMFES-----V- 253 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~----~v~~~~~d~~~~-----~- 253 (360)
++.+|||+|||.|.-+....... -..++++|+ +..++.|+++ . ...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999998888777752 346889998 6677766532 1 246788888752 2
Q ss_pred CC--C-cEEEeccccccC--ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 254 PE--G-DAILMKWILHCW--DDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 254 ~~--~-D~i~~~~vlh~~--~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+. . |+|-+.++||+. +.+.+..+|+++.+.|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2 999999999983 455677899999999999999998664
No 152
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.45 E-value=9.8e-07 Score=78.97 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=74.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CC--CCCcEEEec-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV--PEGDAILMK- 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~--~~~D~i~~~- 262 (360)
.+++.+|||+|||+|..+..+++...+ ..++.+|. +..++.++++ .+|+++..|... +. +..|+|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 456789999999999999999988754 58899998 7777666542 458888888765 22 234999861
Q ss_pred -----ccccc-------CChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 263 -----WILHC-------WDDDHC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 263 -----~vlh~-------~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.++.. +.+++. .++|+++.+.|||||+|+..+...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 22221 222222 469999999999999998776544
No 153
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.44 E-value=3.3e-06 Score=71.27 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=90.0
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCC-CCCC---C--cEEEeccccccCCh-
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPE---G--DAILMKWILHCWDD- 270 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~---~--D~i~~~~vlh~~~~- 270 (360)
..++|||||=+....+. .++-..++.+|+.+.. -.+...||++ |+|. . |+|.++.||.++|+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~~--------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQH--------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCCC--------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999976654433 3455567888863311 2466788888 7762 2 99999999999995
Q ss_pred hHHHHHHHHHHHhCCCCcE-----EEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 271 DHCLRILKNCYKAVPGNGK-----VIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~-----lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
.++-.+++++++.|+|+|. |+|+-|..- . .+.+..+.+.|.++++..||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C---------------------v-~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC---------------------V-TNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchH---------------------h-hcccccCHHHHHHHHHhCCcEEEE
Confidence 4677999999999999999 877754321 1 266677889999999999999998
Q ss_pred EEecC
Q 018145 346 FASCV 350 (360)
Q Consensus 346 ~~~~~ 350 (360)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 86654
No 154
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.39 E-value=1.8e-06 Score=82.63 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=76.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C-C-CC-CcEEEe-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S-V-PE-GDAILM- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~-~-~~-~D~i~~- 261 (360)
..++.+|||+|||+|..+..+++.. +..+++.+|+ +..++.++++ ..++++.+|..+ + . ++ .|.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5667899999999999999999886 4578999998 7777776543 357899999876 2 2 22 399986
Q ss_pred -----cccccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 262 -----KWILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 262 -----~~vlh~-------~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
..++.. ++.++ -.++|.++.+.|||||+++.......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 222322 22211 25679999999999999888776553
No 155
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.39 E-value=7.9e-07 Score=74.26 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=66.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---------CCCcEEEecCCCCCC-----CC--CcE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESV-----PE--GDA 258 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~-----~~--~D~ 258 (360)
..++.+|||+|||+|..+..+++..+..+++..|.+++++..+. ..++.+...|..++. .. .|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34578999999999999999888877788999998556554322 256888888765521 22 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+.+.++++ ++....+++.+.+.|+|+|.+++....+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999986 5678899999999999999988777655
No 156
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.36 E-value=1.1e-06 Score=76.03 Aligned_cols=95 Identities=19% Similarity=0.332 Sum_probs=70.6
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----C--CCcEEEecCCCC---C-CCCC--cEEEecccc
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFE---S-VPEG--DAILMKWIL 265 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~d~~~---~-~~~~--D~i~~~~vl 265 (360)
..+||||||.|.+...+++.+|+..++++++ ...+..+.+ . .++.++++|+.. . ++.+ |-|++.+-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999998 444443322 1 489999999876 2 4443 777664322
Q ss_pred ccCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 018145 266 HCWDDDH-------CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 266 h~~~~~~-------~~~~L~~i~~~LkpgG~lli~e 294 (360)
- |+-.. ...+|+.+.+.|+|||.|.+.+
T Consensus 130 P-WpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 P-WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred C-CCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 2 22111 1368999999999999999866
No 157
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.34 E-value=5.8e-07 Score=76.81 Aligned_cols=98 Identities=16% Similarity=0.289 Sum_probs=75.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC-------C--CC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-------P--EG 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~-------~--~~ 256 (360)
..++.+|||||+++|.-+..+++..| +.+++.+|. |+..+.|++. ++|+++.+|+.+.+ + ..
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 34678999999999999999999987 589999998 7777776542 58999999987521 1 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+|++-. ...+-...+..+.+.|+|||.+++-+..+
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 9999854 23345678999999999999888766554
No 158
>PLN02823 spermine synthase
Probab=98.33 E-value=1.6e-06 Score=79.75 Aligned_cols=97 Identities=16% Similarity=0.096 Sum_probs=72.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCCC---CCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFESV---PEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~~---~~~-D~i~ 260 (360)
+++.+||.||+|.|..+..+++..+..+++.+|+ +.+++.+++. +|++++.+|..+.+ ++. |+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998766678888888 8888888642 68999999988722 223 9999
Q ss_pred eccccccC---Chh--HHHHHHH-HHHHhCCCCcEEEEE
Q 018145 261 MKWILHCW---DDD--HCLRILK-NCYKAVPGNGKVIVM 293 (360)
Q Consensus 261 ~~~vlh~~---~~~--~~~~~L~-~i~~~LkpgG~lli~ 293 (360)
+-.. ..+ +.. --..+++ .+++.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8521 111 000 0235787 899999999998764
No 159
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.33 E-value=2.6e-06 Score=76.12 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=76.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCC---CCCC-CcEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVPE-GDAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~---~~~~-~D~i~ 260 (360)
+.+.+||-||+|.|.+++++++..+--+++.+|+ |.+++.+++. +|++++.+|..+ ..+. .|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3447999999999999999999998888999998 9999988763 789999999887 2333 49999
Q ss_pred eccccccCCh-h--HHHHHHHHHHHhCCCCcEEEEE
Q 018145 261 MKWILHCWDD-D--HCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 261 ~~~vlh~~~~-~--~~~~~L~~i~~~LkpgG~lli~ 293 (360)
+-..=.- .+ + --..+++.++++|+|+|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 8543221 11 0 1257899999999999999987
No 160
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.33 E-value=2.6e-06 Score=75.67 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=75.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC-c
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D 257 (360)
.++..-.++ .+..|||||||+|.++.-.+++. ..++..++..+|.+.|++. +||.++.|.+.+ ++|+. |
T Consensus 168 Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 168 AILENHSDF-QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVD 245 (517)
T ss_pred HHHhccccc-CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhcc
Confidence 444443323 35899999999999998766664 4567777777888887652 789999999999 88876 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
++++--.=..+-++...+.--.+++.|||.|+.+=
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 99874433333345555555677899999998763
No 161
>PLN02476 O-methyltransferase
Probab=98.32 E-value=1.7e-06 Score=76.98 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=76.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC--------C-CC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV--------P-EG 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~--------~-~~ 256 (360)
..++.+|||||+++|..+..+++..| +.+++.+|. ++..+.|++. ++|+++.||+.+.+ . ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 55689999999999999999999875 567888888 7777777542 58999999987621 1 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
|+|++-. +...-..++..+.+.|+|||.+++-+..+.
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 9998843 234567889999999999999887555443
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.32 E-value=1.7e-06 Score=74.09 Aligned_cols=100 Identities=12% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEe-cCCCCCC----CC-CcEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVG-GNMFESV----PE-GDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~-~d~~~~~----~~-~D~i 259 (360)
..++.+|||||.+.|.-+..++...| +.+.+.+|. |+..+.|+++ ++|+++. +|..+.+ .+ .|+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 889999998 8888888763 5688888 5877622 12 2999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
++-. ...+-+.+|..+.+.|+|||.+++-+...+.
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 8843 2334468899999999999988876665543
No 163
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.30 E-value=1.1e-06 Score=83.80 Aligned_cols=127 Identities=19% Similarity=0.245 Sum_probs=80.1
Q ss_pred ChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccC---CCcceEEEEcCCcchHHHHHHhhC----CCCeEEEecc-
Q 018145 158 HIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGF---QNVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL- 229 (360)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~---~~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~- 229 (360)
..|+.+++++.....|.+++.. .+.+..... .+...|+|||||+|-++...+++. ...+++.++.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 3578888888888888776532 222322211 135789999999999987766654 4577888876
Q ss_pred hhHHHhC----CC---CCCcEEEecCCCC-CCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 018145 230 PHVVQDA----PS---YAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 230 ~~~~~~a----~~---~~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
|.++... +. .++|+++.+|+.+ ..|+- |+|++-..=.....+-....|....+.|||||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 4433222 11 2689999999999 66754 99987333222223445567888999999998765
No 164
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.29 E-value=3.7e-06 Score=76.59 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=92.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEec----CCCCCC--CC--CcEE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGG----NMFESV--PE--GDAI 259 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~----d~~~~~--~~--~D~i 259 (360)
...++||||||+|.....++.+.++.+++++|+ +.+++.|+.. .+|++... +++... +. .|+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 458999999999999888888888999999998 8888877642 35776542 333322 22 2999
Q ss_pred EeccccccCChhH---HHHHHHHH----------------HHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh
Q 018145 260 LMKWILHCWDDDH---CLRILKNC----------------YKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR 320 (360)
Q Consensus 260 ~~~~vlh~~~~~~---~~~~L~~i----------------~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (360)
+++==+|.-..+. ...-.+++ .+.+.+||.+-++..+..+. . .+..-..++.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS-----~-~~~~~~gwft--- 264 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES-----K-AFAKQVLWFT--- 264 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH-----H-HHHhhCcEEE---
Confidence 9987777533221 11122222 24455778777776655432 0 0000011110
Q ss_pred cCCCccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 321 DGGGRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 321 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
+.-++.-+...+.+.|++.|.+.++++++.
T Consensus 265 smv~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 265 SLVSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred EEeeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 112455589999999999999888888775
No 165
>PRK04148 hypothetical protein; Provisional
Probab=98.28 E-value=7.7e-06 Score=64.29 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=70.9
Q ss_pred HHHhhcccCCCcceEEEEcCCcch-HHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCC---CC-cEEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAIL 260 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~---~~-D~i~ 260 (360)
.+.+.++ ..++.+|||||||+|. .+..|.+. +..++++|. |..++.+++ ..++++.+|++++-+ ++ |+|+
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 4555555 3445899999999996 77777765 567888887 888887765 358999999999543 23 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.+ |+.+...-+.++.+..+ .-++|...
T Consensus 83 sir-----pp~el~~~~~~la~~~~--~~~~i~~l 110 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN--VPLIIKPL 110 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC--CCEEEEcC
Confidence 865 56677778888888764 45555443
No 166
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.28 E-value=3.9e-06 Score=76.44 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=77.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC----CCeEEEecc-hhHHHhCCC------CCCcEE--EecCCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP----QIKAVNFDL-PHVVQDAPS------YAGVEH--VGGNMFES 252 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------~~~v~~--~~~d~~~~ 252 (360)
..|+..++ ++..|+|+|||+|.=+..|++.+. ..+++.+|+ .+.++.+.+ .+.+++ +.+|+.+.
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 45666543 456899999999988887777663 467999998 455554432 255665 78888662
Q ss_pred ---CC-----CC-cEE-EeccccccCChhHHHHHHHHHHH-hCCCCcEEEE
Q 018145 253 ---VP-----EG-DAI-LMKWILHCWDDDHCLRILKNCYK-AVPGNGKVIV 292 (360)
Q Consensus 253 ---~~-----~~-D~i-~~~~vlh~~~~~~~~~~L~~i~~-~LkpgG~lli 292 (360)
.+ .. .++ ++.+.+.+++++++..+|+++++ .|+||+.|+|
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 21 12 455 56789999999999999999999 9999999888
No 167
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.28 E-value=3.2e-06 Score=75.27 Aligned_cols=82 Identities=12% Similarity=0.292 Sum_probs=57.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC-CCCCCc--
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEGD-- 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~~D-- 257 (360)
..+++.++ ..++.+|||||||+|.++..+++..+. ++++|. +.+++.+++ .++++++.+|+.+ +.+..|
T Consensus 19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~~ 95 (253)
T TIGR00755 19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPKQ 95 (253)
T ss_pred HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCCc
Confidence 45555555 566789999999999999999999876 555565 777766653 2679999999988 555334
Q ss_pred EEEeccccccCCh
Q 018145 258 AILMKWILHCWDD 270 (360)
Q Consensus 258 ~i~~~~vlh~~~~ 270 (360)
.+++++.=++++.
T Consensus 96 ~~vvsNlPy~i~~ 108 (253)
T TIGR00755 96 LKVVSNLPYNISS 108 (253)
T ss_pred ceEEEcCChhhHH
Confidence 3333444444443
No 168
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=2.2e-06 Score=74.96 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=77.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChh-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDD- 271 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~- 271 (360)
.+..++|+|||.|.+... +|.+..+++|+ ...+.-+++.+.......|+.+ +.++. |..+...++||++..
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 478999999999987643 58889999998 6666767665554677888888 66543 999999999999865
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 272 HCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
....+++++.+.++|||..+|.-+.
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeh
Confidence 4568899999999999998875543
No 169
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.23 E-value=4.7e-06 Score=74.88 Aligned_cols=111 Identities=12% Similarity=0.259 Sum_probs=78.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCC-eEEEecc-hhHHHhCCCC----CCcEE--EecCCCC---CCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY----AGVEH--VGGNMFE---SVP 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~~v~~--~~~d~~~---~~~ 254 (360)
.++...++ .-.+.+|||+|+|.|..+-+..+.++.. +++.+|. +.+.+.++.. ..... ...++.. +++
T Consensus 23 ~El~~r~p-~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLP-DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred HHHHHhCc-CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence 34555555 3356899999999999888888888754 5788887 7777765432 11110 1111111 233
Q ss_pred CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 255 EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 255 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
..|+|+++++|..+++.....+++++.+.+.+ .|+|+|+..+.
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 44999999999999998888999999888876 99999986654
No 170
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.22 E-value=6.5e-06 Score=73.45 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=59.5
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC-CCCCCcE
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEGDA 258 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~~D~ 258 (360)
...+++.+. ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 345555554 5567899999999999999999984 46777777 777776654 2679999999988 6665688
Q ss_pred EEeccccc
Q 018145 259 ILMKWILH 266 (360)
Q Consensus 259 i~~~~vlh 266 (360)
|+++--.+
T Consensus 95 Vv~NlPy~ 102 (258)
T PRK14896 95 VVSNLPYQ 102 (258)
T ss_pred EEEcCCcc
Confidence 87765543
No 171
>PRK00536 speE spermidine synthase; Provisional
Probab=98.22 E-value=6e-06 Score=72.96 Aligned_cols=89 Identities=10% Similarity=0.083 Sum_probs=68.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCCC-CCCcEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFESV-PEGDAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~~-~~~D~i~~~~ 263 (360)
+.+.+||=||||.|..++++++. |. +++.+|+ +.+++.+++. +|++++.. +.+.. ...|+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 56799999999999999999997 44 8888888 8899888762 78888762 22222 2349999864
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. .+ ....+.++++|+|||.++..-
T Consensus 148 ~----~~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C----CC---hHHHHHHHHhcCCCcEEEECC
Confidence 3 12 467899999999999998753
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.18 E-value=5.8e-06 Score=74.36 Aligned_cols=74 Identities=11% Similarity=0.246 Sum_probs=55.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DA 258 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~ 258 (360)
..+++.+. ..++.+|||||||+|.++..+++..+ +++++|. +.+++.+++. ++++++.+|+.+ +.++. |.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 34555554 56678999999999999999999976 6677776 8888877653 589999999988 55443 55
Q ss_pred EEec
Q 018145 259 ILMK 262 (360)
Q Consensus 259 i~~~ 262 (360)
|+.+
T Consensus 109 vv~N 112 (272)
T PRK00274 109 VVAN 112 (272)
T ss_pred EEEe
Confidence 5554
No 173
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.18 E-value=2.8e-06 Score=80.00 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=70.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEe---cc-hhHHHhCCCCCCcEEEecCC--CC-CCCCC--cEEEeccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNF---DL-PHVVQDAPSYAGVEHVGGNM--FE-SVPEG--DAILMKWILH 266 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~v~~~~~d~--~~-~~~~~--D~i~~~~vlh 266 (360)
...+.+||||||+|.++..++++ ++..+-+ |. +..++.|.++ +|..+-+-+ .. |+|+. |+|-++.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhcccccc
Confidence 34579999999999999999988 4443332 22 3344444332 243333332 12 77765 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.|.+.+ ..+|-.+.|+|+|||++++.-+-..
T Consensus 193 ~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 998765 4689999999999999998776543
No 174
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.18 E-value=6.4e-06 Score=70.14 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=64.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC--CC--CcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV--PE--GDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~--~~--~D~i~~~~vl 265 (360)
.+.+|||+|||+|.++...+.+. ..+++++|. +.+++.++++ .+++++.+|+.+.. .. .|+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45799999999999998766554 357888887 7777766542 46899999987632 22 3999986543
Q ss_pred ccCChhHHHHHHHHHHHh--CCCCcEEEEEe
Q 018145 266 HCWDDDHCLRILKNCYKA--VPGNGKVIVMN 294 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~--LkpgG~lli~e 294 (360)
+. .-...+++.+.+. |+|++.+++..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 22 1233455555553 78888776644
No 175
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=2e-05 Score=68.47 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=69.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCC----CCCCC--CC--cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNM----FESVP--EG--DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~----~~~~~--~~--D~i 259 (360)
..+..+||+|||+|..+..++...|+++++.+|. +.++..|.++ +++..++.++ +.+.+ .+ |++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999999999999999999998 6666665542 6787775544 43332 33 777
Q ss_pred Eec--cccccC----------------------ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMK--WILHCW----------------------DDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~--~vlh~~----------------------~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+++ ++.+.= .-+....++.-+.|.|+|||.+.+--.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 763 222210 002234567778899999998887443
No 176
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.15 E-value=5.3e-06 Score=79.94 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=69.8
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC-----
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES----- 252 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~----- 252 (360)
.+.+++.+. ..++.+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ .+++++.+|+.+.
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344444444 4566899999999999999999885 57888998 8888887653 4689999998652
Q ss_pred CC-C-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 253 VP-E-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 253 ~~-~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+ . .|+|++.- |-......++.+.+ ++|++.+++.-
T Consensus 363 ~~~~~fD~Vi~dP-----Pr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 363 WALGGFDKVLLDP-----PRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhcCCCCEEEECc-----CCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 22 2 29998732 11123345655555 68888777643
No 177
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.13 E-value=9.2e-06 Score=72.04 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=74.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------C----CcEEEecCCCCC-----C--C-
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------A----GVEHVGGNMFES-----V--P- 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~d~~~~-----~--~- 254 (360)
++...++|+|||-|.-+...-++. --.++++|+ ...+++|+.+ . .+.|+.+|.+.. + +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 567889999999999887776652 235799998 5567777653 1 267888887651 2 2
Q ss_pred -CCcEEEecccccc-CC-hhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 255 -EGDAILMKWILHC-WD-DDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 255 -~~D~i~~~~vlh~-~~-~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..|+|-|.+++|+ |. .+.+..+|+++.+.|||||+++-.-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 2499999999998 43 5567789999999999999988643
No 178
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=2e-05 Score=66.55 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=94.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CC--cEEEecCCCC-CCCCC--cEEEeccccccC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AG--VEHVGGNMFE-SVPEG--DAILMKWILHCW 268 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~--v~~~~~d~~~-~~~~~--D~i~~~~vlh~~ 268 (360)
....++|||||-|.....+..+. =-+.+..|. ..|++.++.. +. +....+|-.. ++.+. |+|+.+..+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 35689999999999999988875 235677887 7788888765 44 3455666554 56554 999999999975
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccC------CHHHHHHHHHHcCCc
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER------TKKEYTELAIAAGFK 342 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------t~~e~~~ll~~aGf~ 342 (360)
+ +.+.-+.+++.+|||+|.++-.-..-+. .++ ......+..+-. .||... ...++-.+|..|||.
T Consensus 151 N--dLPg~m~~ck~~lKPDg~FiasmlggdT-----LyE-LR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 N--DLPGSMIQCKLALKPDGLFIASMLGGDT-----LYE-LRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred c--cCchHHHHHHHhcCCCccchhHHhcccc-----HHH-HHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 4 5678899999999999987753322111 111 111222222211 133221 346788999999999
Q ss_pred eeeEE
Q 018145 343 GINFA 347 (360)
Q Consensus 343 ~~~~~ 347 (360)
...+-
T Consensus 222 m~tvD 226 (325)
T KOG2940|consen 222 MLTVD 226 (325)
T ss_pred cceec
Confidence 76663
No 179
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=8.4e-06 Score=67.97 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=68.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCC----------------CCcEEEecCCCCCC-C
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY----------------AGVEHVGGNMFESV-P 254 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~----------------~~v~~~~~d~~~~~-~ 254 (360)
+.++.+.||||+|+|.++..+..-. +....++++. |+.++.++++ .++.++.||-..-. +
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5678999999999999998887543 3333478887 8888877642 46889999988733 3
Q ss_pred C--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 255 E--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 255 ~--~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
. .|.|.+.-. +.++.+++..-|+|||+++|
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEE
Confidence 2 399988632 34567788889999999998
No 180
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.09 E-value=7.2e-06 Score=72.06 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=74.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC----------CC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV----------PE 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~----------~~ 255 (360)
..++.+||+||+++|.-+..+++..| +.+++.+|. ++..+.|++. ++|+++.||+.+.+ ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45678999999999999999999874 678888888 7666666542 68999999987621 12
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.|+|++-.- ...-...+..+.+.|+|||.+++-+..+
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 299988532 2345678899999999999977644443
No 181
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.08 E-value=4.3e-06 Score=73.84 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCC---CCCC-C-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVPE-G-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~---~~~~-~-D~i 259 (360)
+++.+||-||+|.|..+..+++..+-.+++++|+ |.+++.+++. +|++++.+|... ...+ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4679999999999999999998776678888888 8888887652 689999999876 3334 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.-..-...+... ...+++.+++.|+|||.+++.-.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 8733221111111 25789999999999999998763
No 182
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.08 E-value=6.2e-05 Score=65.39 Aligned_cols=137 Identities=13% Similarity=0.094 Sum_probs=83.0
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHH-hCCCCCCcE-EEecCCCC----CCC-C--
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ-DAPSYAGVE-HVGGNMFE----SVP-E-- 255 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~v~-~~~~d~~~----~~~-~-- 255 (360)
..+++.++...++.+|||+|||+|.++..+++. +..+++++|. +.++. ..++.+++. +...|+.. +++ +
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~ 142 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFA 142 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCce
Confidence 345555442235679999999999999999986 4567899998 54554 455556654 33334432 111 1
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE-EEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccC------
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI-VMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER------ 327 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~ll-i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 327 (360)
.|+.+++.. .+|..+.+.|+| |.++ ++-|-+.-.+.. ...+|-.+
T Consensus 143 ~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~----------------~~~~giv~~~~~~~ 195 (228)
T TIGR00478 143 TFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREK----------------KNKKGVVRDKEAIA 195 (228)
T ss_pred eeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhh----------------cCcCCeecCHHHHH
Confidence 276666543 247889999999 5554 444433221100 00122222
Q ss_pred -CHHHHHHHHHHcCCceeeEEecC
Q 018145 328 -TKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 328 -t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
-.+++...+.+.||++..+.+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 196 LALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHHHHcCCCeEeeEEECC
Confidence 24566777888899998888775
No 183
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.08 E-value=1.5e-05 Score=72.24 Aligned_cols=88 Identities=15% Similarity=0.323 Sum_probs=62.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------CCCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~ 256 (360)
..+++... ..++.+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~ 102 (294)
T PTZ00338 26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYF 102 (294)
T ss_pred HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccccc
Confidence 45555555 56678999999999999999998754 4666666 777776653 2579999999988 55555
Q ss_pred cEEEeccccccCChhHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRIL 277 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L 277 (360)
|+|+++ .=++++.+-..++|
T Consensus 103 d~VvaN-lPY~Istpil~~ll 122 (294)
T PTZ00338 103 DVCVAN-VPYQISSPLVFKLL 122 (294)
T ss_pred CEEEec-CCcccCcHHHHHHH
Confidence 877764 34445555444444
No 184
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.07 E-value=8.9e-06 Score=82.63 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=70.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCC---CCC-CcEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFES---VPE-GDAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~---~~~-~D~i~~~~ 263 (360)
++.+|||+|||+|.++..+++. ...+++.+|+ +.+++.++++ .+++++.+|+++. .+. .|+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4689999999999999999986 3446899998 8888877652 3689999998762 223 39999831
Q ss_pred ---cc----cc-C-ChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 264 ---IL----HC-W-DDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 264 ---vl----h~-~-~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
.- .. + ...+-..+++.+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 00 00 0 1223467899999999999988764
No 185
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=0.00012 Score=59.85 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=83.7
Q ss_pred cceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCC-CC-cEEEeccccccC
Q 018145 198 VERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVP-EG-DAILMKWILHCW 268 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~-~~-D~i~~~~vlh~~ 268 (360)
+.-++|||||+|..+..+.+.. |+..+...|+ |.+++..++. .++..+..|....+. +. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999998888765 7888899998 8777764331 346777788777322 33 887775322111
Q ss_pred Chh-------------------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCH
Q 018145 269 DDD-------------------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 329 (360)
Q Consensus 269 ~~~-------------------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 329 (360)
+++ -..++|..+-..|.|.|.++++-.... ..
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N-----------------------------~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN-----------------------------KP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc-----------------------------CH
Confidence 111 133566666677777777776553211 24
Q ss_pred HHHHHHHHHcCCceeeEEecC---CceeEEEEe
Q 018145 330 KEYTELAIAAGFKGINFASCV---CNLYIMEFF 359 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~---~~~~vi~~~ 359 (360)
+|+-+.++.-||.......-. ...+++.++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 556667777788765544322 345555554
No 186
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.98 E-value=2.4e-05 Score=73.79 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=68.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCC------C-CCcEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV------P-EGDAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~------~-~~D~i 259 (360)
.++.+|||+|||+|.++...+.. +..+++.+|. +.+++.++++ .+++++.+|+++.. . ..|+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 34689999999999998776543 3458899998 8888877642 26889999998721 1 23999
Q ss_pred EeccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 260 LMKWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 260 ~~~~vlh~~~~-------~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
++.---..-+. ..-..+++.+.+.|+|||.|+...
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 98522110011 123456677899999999999755
No 187
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.92 E-value=1.5e-05 Score=71.91 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCC-CC-cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVP-EG-DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~-~~-D~i~~~~vl 265 (360)
-+...|||||||+|-++.--+++. ..+++++|-.++.+.|.+. +.|+++.+.+.+ .+| +- |+|++-+.=
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 346899999999999998877776 6788888877777666542 458999999988 677 44 999875544
Q ss_pred ccCC-hhHHHHHHHHHHHhCCCCcEEE
Q 018145 266 HCWD-DDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 266 h~~~-~~~~~~~L~~i~~~LkpgG~ll 291 (360)
+.+- +.-...+|-.=-+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 4322 2234445555568999999875
No 188
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.91 E-value=2.1e-05 Score=72.27 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=50.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCC-CcEEEec
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPE-GDAILMK 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~-~D~i~~~ 262 (360)
++.+|||+|||+|.++..+++. ..+++++|. +.+++.|++. .+++|+.+|+.+ . ... .|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3589999999999999999985 467899998 8888877643 468999999976 2 222 3999885
No 189
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.90 E-value=2.6e-05 Score=76.09 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=70.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC-CC-----CCCcEEEecCCCC---CCCCC--cEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-PS-----YAGVEHVGGNMFE---SVPEG--DAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~-----~~~v~~~~~d~~~---~~~~~--D~i~~~~v 264 (360)
....+||||||.|.++..+++.+|+..++++|. ...+..+ +. ..++.++.+|+.. .++.+ |.|++.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457999999999999999999999999999998 3333322 11 2578888887642 35544 88777543
Q ss_pred cccCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 018145 265 LHCWDDDH-------CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 265 lh~~~~~~-------~~~~L~~i~~~LkpgG~lli~e 294 (360)
=- |+... ...+|+.+++.|||||.+.+..
T Consensus 427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DP-WIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 32 22110 2478999999999999999865
No 190
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00018 Score=63.16 Aligned_cols=90 Identities=12% Similarity=0.328 Sum_probs=63.5
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC----CCCcEEEecCCCC-CCCC--C-
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFE-SVPE--G- 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~v~~~~~d~~~-~~~~--~- 256 (360)
.+.|++... ..++.+|||||+|.|.++..|++....+.++-.| +.+++..++ .++++++.+|+.+ ++++ .
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 456777666 5567899999999999999999998887777777 555544333 4789999999999 7775 3
Q ss_pred cEEEeccccccCChhHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRIL 277 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L 277 (360)
+.|+. +.=++.+.+-..++|
T Consensus 97 ~~vVa-NlPY~Isspii~kll 116 (259)
T COG0030 97 YKVVA-NLPYNISSPILFKLL 116 (259)
T ss_pred CEEEE-cCCCcccHHHHHHHH
Confidence 55554 333344444333333
No 191
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.70 E-value=4.8e-05 Score=73.15 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=63.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC-----CC-C-CcEEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-----VP-E-GDAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~-----~~-~-~D~i~ 260 (360)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ .+++++.+|+.+. .. . .|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999874 46888888 8888887653 5799999998652 11 2 29988
Q ss_pred eccccccCChhH-HHHHHHHHHHhCCCCcEEEE
Q 018145 261 MKWILHCWDDDH-CLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 261 ~~~vlh~~~~~~-~~~~L~~i~~~LkpgG~lli 292 (360)
+.-- ... ...+++.+. .++|++.+++
T Consensus 368 ~dPP-----r~G~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 368 LDPP-----RKGCAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred ECcC-----CCCCCHHHHHHHH-hcCCCEEEEE
Confidence 6321 111 235566555 4889876665
No 192
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00012 Score=60.53 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=49.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCCCcEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILMK 262 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~~D~i~~~ 262 (360)
-.+.+|+|+|||||.+++..+-.. -.+++++|+ |++++.++++ .+|+|+..|+.+.....|.++++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 346789999999999998765544 356677776 9999888765 47999999988744444777764
No 193
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00045 Score=58.81 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=89.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC---CCCCC--cEEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE---SVPEG--DAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~---~~~~~--D~i~ 260 (360)
.+.+.+|||.=.|-|+++++.+++.. .+++-++. |.+++.|+-+ .+++++.||..+ ++++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45678999999999999999888853 35555544 9999988754 358999999987 35543 8886
Q ss_pred e---ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 261 M---KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 261 ~---~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
- .+.+- ..-....+-++++|.|||||+++-........ . .|+. -.....+.|+
T Consensus 211 HDPPRfS~A--geLYseefY~El~RiLkrgGrlFHYvG~Pg~r--------------------y-rG~d-~~~gVa~RLr 266 (287)
T COG2521 211 HDPPRFSLA--GELYSEEFYRELYRILKRGGRLFHYVGNPGKR--------------------Y-RGLD-LPKGVAERLR 266 (287)
T ss_pred eCCCccchh--hhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc--------------------c-ccCC-hhHHHHHHHH
Confidence 3 11110 11234678999999999999998544322110 0 1111 2356788999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||.+++.....
T Consensus 267 ~vGF~~v~~~~~~ 279 (287)
T COG2521 267 RVGFEVVKKVREA 279 (287)
T ss_pred hcCceeeeeehhc
Confidence 9999988877544
No 194
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.69 E-value=0.0013 Score=58.31 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=88.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-----h-hHHHhCCC-------------------------------
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----P-HVVQDAPS------------------------------- 238 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~-~~~~~a~~------------------------------- 238 (360)
....+||-=|||-|.++-++++..-.+.+.-+.. . -++....+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3468999999999999999999743333322221 0 11111110
Q ss_pred --------CCCcEEEecCCCC-CCCC---C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc
Q 018145 239 --------YAGVEHVGGNMFE-SVPE---G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 304 (360)
Q Consensus 239 --------~~~v~~~~~d~~~-~~~~---~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~ 304 (360)
..++....|||.+ ..+. + |+|+.++.+- +.+.+...|+.|++.|||||..+=.-|..-..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~---- 208 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPGGYWINFGPLLYHF---- 208 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccCCEEEecCCccccC----
Confidence 1357888999988 3222 2 9998887665 35678899999999999999555333332110
Q ss_pred hhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 305 SAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
-+.. ......-+.+.+|+.++.+..||++++...
T Consensus 209 --------~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 --------EPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred --------CCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000 000123567999999999999999877654
No 195
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.68 E-value=8.3e-05 Score=67.00 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=60.8
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-C--CC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-S--VP 254 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~--~~ 254 (360)
..+++++.+. ..++..+||.+||.|..+..+++.+| +.+++++|. |.+++.+++. ++++++.+|+.+ . .+
T Consensus 7 ll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 7 LLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 3456777775 56678999999999999999999996 789999999 8999887653 479999999876 1 22
Q ss_pred C---C-cEEEe
Q 018145 255 E---G-DAILM 261 (360)
Q Consensus 255 ~---~-D~i~~ 261 (360)
+ . |.|++
T Consensus 86 ~~~~~vDgIl~ 96 (296)
T PRK00050 86 EGLGKVDGILL 96 (296)
T ss_pred cCCCccCEEEE
Confidence 2 3 77765
No 196
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00049 Score=58.14 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=76.6
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecchhHHHhCCCCCCcEEEecCCCCC-C--------
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFES-V-------- 253 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~-~-------- 253 (360)
...+|.+.+.-++++.+|+|+|+..|.++..+++.... ..++++|+.++-. .++|.++.+|+.++ .
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHc
Confidence 34566666654678899999999999999988887644 5688889744432 35599999999873 1
Q ss_pred CCC--cEEEe---ccccccCC------hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 254 PEG--DAILM---KWILHCWD------DDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 254 ~~~--D~i~~---~~vlh~~~------~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+.. |+|++ .++--++. .+-+...+.-+...|+|||.+++-.+.-
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 222 88875 21111111 2234566788888999999999877643
No 197
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.66 E-value=0.00021 Score=61.10 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=83.8
Q ss_pred EEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC---CcEEEeccccccCC
Q 018145 201 LVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKWILHCWD 269 (360)
Q Consensus 201 vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~---~D~i~~~~vlh~~~ 269 (360)
|.||||-+|.+...|++....-+++..|+ +..++.|++. ++|++..+|-++.++. .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999998889999998 7777776542 6899999998875443 378877764 4
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
-.-...+|.+....++...+|++ .|. . ....++++|.+.||.+++-.-.
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lIL-qP~------------------------~------~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLIL-QPN------------------------T------HAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEE-EES------------------------S-------HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEE-eCC------------------------C------ChHHHHHHHHHCCCEEEEeEEE
Confidence 45677888887777765555554 221 1 3456889999999998776543
Q ss_pred C--Cc-eeEEEE
Q 018145 350 V--CN-LYIMEF 358 (360)
Q Consensus 350 ~--~~-~~vi~~ 358 (360)
. +. +-||.+
T Consensus 126 ~e~~~~YeIi~~ 137 (205)
T PF04816_consen 126 EENGRFYEIIVA 137 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred eECCEEEEEEEE
Confidence 3 33 335544
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.66 E-value=7.5e-05 Score=62.68 Aligned_cols=89 Identities=15% Similarity=0.275 Sum_probs=67.8
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-h---hHHHhCCC---CCCcEEEecCCCC-CCCCC-cEEEeccccccCCh
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDD 270 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~---~~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~~ 270 (360)
+++|||+|.|.-+.-++=.+|+.+++.+|. . ..++.+.. .++++++++.+.+ ..+.. |+|+++-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999996 2 23333322 2679999998887 33333 9999987642
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
...++.-+...++|||+++..-
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEc
Confidence 3568888999999999999865
No 199
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.64 E-value=8.8e-05 Score=62.45 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=65.8
Q ss_pred HHHHHhhcccCC--CcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEecCCCCC---------
Q 018145 185 MERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES--------- 252 (360)
Q Consensus 185 ~~~i~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~--------- 252 (360)
..++.+.++-++ ++.++||+||++|.++..++++. +..+++++|+.... ....+.++.+|+.++
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhh
Confidence 345566665222 45999999999999999999998 67889999984431 114455556665431
Q ss_pred CC---CC-cEEEeccccccC---------ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 253 VP---EG-DAILMKWILHCW---------DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 253 ~~---~~-D~i~~~~vlh~~---------~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
.+ .. |+|++-.....- ..+-+...|.-+.+.|+|||.+++--..
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 23 888874421111 1123345566666779999998876543
No 200
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.62 E-value=0.0002 Score=60.63 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=60.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C--C-CC-cEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--P-EG-DAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~--~-~~-D~i~~ 261 (360)
.+.+|||++||+|.++.+++.+.. .+++.+|. +.+++.+++. ++++++.+|+++. . . .. |+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 357999999999999999999865 36888887 6666655442 3688999999652 1 1 22 77776
Q ss_pred ccccccCChhHHHHHHHHHH--HhCCCCcEEEEEee
Q 018145 262 KWILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~--~~LkpgG~lli~e~ 295 (360)
-=-... .....++..+. ..|+++|.++ +|.
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv-~E~ 159 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIV-VEE 159 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEE-EEe
Confidence 322211 12234444443 3577777554 454
No 201
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.59 E-value=0.0009 Score=55.34 Aligned_cols=140 Identities=18% Similarity=0.184 Sum_probs=83.4
Q ss_pred cCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHH-----------HhCCC--CCCcEEEecCCCC-CCCCC-c
Q 018145 194 GFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVV-----------QDAPS--YAGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 194 ~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~-----------~~a~~--~~~v~~~~~d~~~-~~~~~-D 257 (360)
+++++.+|+|+=.|.|+++.-+.... |.-.+..+-..+.. ..+++ ..+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37889999999999999998777654 33333222111111 11111 1345555555444 33344 7
Q ss_pred EEEeccccccC-----ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 258 AILMKWILHCW-----DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 258 ~i~~~~vlh~~-----~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
+++....-|++ ...-..++-+.++++|||||.+++.|+........ .+-. + .+ .+.....
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~---------~dt~----~-~~-ri~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL---------SDTI----T-LH-RIDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh---------hhhh----h-hc-ccChHHH
Confidence 77654333332 23456788999999999999999999876543211 1100 0 11 2255667
Q ss_pred HHHHHHcCCceeeEEe
Q 018145 333 TELAIAAGFKGINFAS 348 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~ 348 (360)
.+..+.+||+..--..
T Consensus 190 ~a~veaaGFkl~aeS~ 205 (238)
T COG4798 190 IAEVEAAGFKLEAESE 205 (238)
T ss_pred HHHHHhhcceeeeeeh
Confidence 7888889999765543
No 202
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.59 E-value=0.0041 Score=58.09 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=86.6
Q ss_pred CcceEEEEcCCcchHHHHH--------Hhh-------CCCCeEEEecchh--------HHHhCC------------CCCC
Q 018145 197 NVERLVDVGGGFGVTLSMI--------TSK-------YPQIKAVNFDLPH--------VVQDAP------------SYAG 241 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~--------~~~~a~------------~~~~ 241 (360)
+..+|+|+|||+|..+..+ .++ -|.+.+..-|+|. .+..-+ ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999765432 222 2457777777751 111000 0011
Q ss_pred ---cEEEecCCCC-CCCCC--cEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 018145 242 ---VEHVGGNMFE-SVPEG--DAILMKWILHCWDD--D----------------------------------HCLRILKN 279 (360)
Q Consensus 242 ---v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~--~----------------------------------~~~~~L~~ 279 (360)
+.-+.|.|.+ -+|.. ++++++.+||+++. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445578887 57876 99999999999872 1 12334555
Q ss_pred HHHhCCCCcEEEEEeeecCCCCCCch--hhh-hh--hhhhHHHhhhcCCC--------------ccCCHHHHHHHHHHcC
Q 018145 280 CYKAVPGNGKVIVMNSIVPEIPEVSS--AAR-ET--SLLDVLLMTRDGGG--------------RERTKKEYTELAIAAG 340 (360)
Q Consensus 280 i~~~LkpgG~lli~e~~~~~~~~~~~--~~~-~~--~~~~~~~~~~~~~~--------------~~~t~~e~~~ll~~aG 340 (360)
=.+-|.|||++++.-..+++...... ... +. ...-+.-++ . .| -.++.+|+++.+++.|
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv-~-eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~g 300 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLV-Q-EGLVTSEKRDSFNIPVYAPSLQDFKEVVEANG 300 (386)
T ss_pred HHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHH-H-cCCCCHHHHhcccCcccCCCHHHHHHHHhhcC
Confidence 56779999999998877653211110 000 00 000111111 1 22 2258999999999988
Q ss_pred -CceeeEE
Q 018145 341 -FKGINFA 347 (360)
Q Consensus 341 -f~~~~~~ 347 (360)
|.+.++.
T Consensus 301 sF~I~~le 308 (386)
T PLN02668 301 SFAIDKLE 308 (386)
T ss_pred CEEeeeeE
Confidence 6654443
No 203
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.58 E-value=0.0002 Score=67.39 Aligned_cols=91 Identities=7% Similarity=-0.045 Sum_probs=61.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC----CCCcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV----PEGDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~----~~~D~i~~~~vl 265 (360)
++.+|||++||+|.++..++.. ..+++++|. +.+++.++++ ++++++.+|+.+.. ...|+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3479999999999999999864 457888888 8888877643 46899999986521 123998884211
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
-.+ ...+++.+. .++|++.+++.-
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEEe
Confidence 111 124455554 478887776643
No 204
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.57 E-value=0.00017 Score=62.78 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=57.3
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
.+.|+..-+ .+++..|||||.|||.++..+++....+-++-.| |.++....++ ..++++.||++. +.|..
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~D-prmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f 124 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEID-PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF 124 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecC-cHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence 345666666 7888999999999999999999985544444444 7766654432 468999999999 77877
Q ss_pred cEEEec
Q 018145 257 DAILMK 262 (360)
Q Consensus 257 D~i~~~ 262 (360)
|+++.+
T Consensus 125 d~cVsN 130 (315)
T KOG0820|consen 125 DGCVSN 130 (315)
T ss_pred ceeecc
Confidence 877763
No 205
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00012 Score=65.77 Aligned_cols=102 Identities=17% Similarity=0.338 Sum_probs=67.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCe-EEEecchhHHHh----CCCC---CCcEEEecCCCC---CCCCCcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDLPHVVQD----APSY---AGVEHVGGNMFE---SVPEGDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~----a~~~---~~v~~~~~d~~~---~~~~~D~i~~~~vl 265 (360)
.+.+|||||.|.|.-+-++-.-+|++. ++.+.....+.. ...+ ........|+.. ++|..|.|.+.-++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 357899999999988888888889874 555554222221 1111 234444555543 46666766655555
Q ss_pred ccC----ChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 266 HCW----DDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 266 h~~----~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
|.+ ....+...++++...+.|||.|+|+|...+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 443 233444589999999999999999997654
No 206
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.40 E-value=0.00038 Score=65.47 Aligned_cols=90 Identities=13% Similarity=0.064 Sum_probs=68.3
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC---CCCcEEEecccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV---PEGDAILMKWILHC 267 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~---~~~D~i~~~~vlh~ 267 (360)
..+|||++||+|..+..++...+..+++++|. +..++.++++ ..+++..+|+.... ...|+|++-- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999998877667899998 8888877643 34668888886522 2249998842 1
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
. ....++..+.+.++|||.+++.
T Consensus 135 -G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 1 1245788878889999999998
No 207
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.39 E-value=0.00039 Score=57.06 Aligned_cols=97 Identities=11% Similarity=0.216 Sum_probs=71.0
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCCcEEEeccccccCCh
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEGDAILMKWILHCWDD 270 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~D~i~~~~vlh~~~~ 270 (360)
..+.|+|.|+|-++.-.++. .-+++.++. |.....|+++ .+++++.+|+.+ ++..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57999999999998765555 345555555 7777776654 579999999999 7866799987543222224
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+.-..+++.+.+-||.+++++=.+...
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~~ 138 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVRI 138 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHhh
Confidence 555688999999999999988655433
No 208
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.36 E-value=0.00012 Score=61.05 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=79.4
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCC-CC--CcEEEeccccccCChhHH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV-PE--GDAILMKWILHCWDDDHC 273 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~-~~--~D~i~~~~vlh~~~~~~~ 273 (360)
.+.++||+|.|.|..+..++..+..+-++-+. ..|..+.+.+ +.++... .+-. .+ .|+|.|.+.|.-.- +.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS-~tMr~rL~kk-~ynVl~~--~ew~~t~~k~dli~clNlLDRc~--~p 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELS-WTMRDRLKKK-NYNVLTE--IEWLQTDVKLDLILCLNLLDRCF--DP 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhh-HHHHHHHhhc-CCceeee--hhhhhcCceeehHHHHHHHHhhc--Ch
Confidence 46899999999999998887766442222221 3344433321 1222211 1111 11 29999999886543 33
Q ss_pred HHHHHHHHHhCCC-CcEEEEEeeecCC-----CCCCchhhhhhhhhhHHHhhhcCCCccC--CHHHHHHHHHHcCCceee
Q 018145 274 LRILKNCYKAVPG-NGKVIVMNSIVPE-----IPEVSSAARETSLLDVLLMTRDGGGRER--TKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 274 ~~~L~~i~~~Lkp-gG~lli~e~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~ 345 (360)
-++|+.++.+|+| .|++++.=...-. ..+..+. +....+. .+|+.+ ....+.++|+++||.+..
T Consensus 186 ~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~-rPdn~Le-------~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPL-RPDNLLE-------NNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcC-CchHHHH-------hcCccHHHHHHHHHHHHHhcCchhhh
Confidence 6899999999999 7888874322211 1111110 0011111 134332 234578899999999877
Q ss_pred EEecC
Q 018145 346 FASCV 350 (360)
Q Consensus 346 ~~~~~ 350 (360)
....+
T Consensus 258 wTrlP 262 (288)
T KOG3987|consen 258 WTRLP 262 (288)
T ss_pred hhcCC
Confidence 66554
No 209
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.35 E-value=0.0044 Score=55.24 Aligned_cols=148 Identities=12% Similarity=0.111 Sum_probs=94.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---------CCCcEEEecCCCCCC----------CCC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESV----------PEG 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~----------~~~ 256 (360)
.+...|+.+|||-=.....+... ++++++-+|+|++++.-++ .++++++..|+.... +..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34567999999988777666322 3688999999988774322 257889999986321 112
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-cCCCccCCHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-DGGGRERTKKEYTE 334 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ 334 (360)
-++++-.++.+++.+++.++|+.+.+...||+.+++ |.+.+-+..... .............. ..-....+.+++.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDGEWRA-GMRAPVYHAARGVDGSGLVFGIDRADVAE 236 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-EeccccchhHHH-HHHHHHHHhhhcccccccccCCChhhHHH
Confidence 588899999999999999999999999989887775 544431110000 00000010000000 00001236789999
Q ss_pred HHHHcCCceeeE
Q 018145 335 LAIAAGFKGINF 346 (360)
Q Consensus 335 ll~~aGf~~~~~ 346 (360)
+|++.||+....
T Consensus 237 ~l~~~Gw~~~~~ 248 (260)
T TIGR00027 237 WLAERGWRASEH 248 (260)
T ss_pred HHHHCCCeeecC
Confidence 999999998765
No 210
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.34 E-value=0.0003 Score=58.51 Aligned_cols=100 Identities=15% Similarity=0.312 Sum_probs=64.5
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------------CCCcEEEecCCCCCCCCC-cEEEec
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFESVPEG-DAILMK 262 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~~~~~~-D~i~~~ 262 (360)
...+.|||||-|.+...+...+|+.-+.+.++ -.+.+..++ ..++.+...+.+.-.|.. ---.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 46799999999999999999999999988887 334433321 144666666665533321 111111
Q ss_pred cccccCChhH-----------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 263 WILHCWDDDH-----------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 263 ~vlh~~~~~~-----------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
-.++.+||+. ...++.+..=.|++||.++.+.-+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 1222223322 2357788888999999999887543
No 211
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.34 E-value=0.00082 Score=60.88 Aligned_cols=95 Identities=20% Similarity=0.377 Sum_probs=71.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-------------CCcEEEecCCCCCCC---CC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFESVP---EG 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~~~~---~~ 256 (360)
.++..++|-+|||.|-.++++++ +|+ -+++.+|+ |.|++.++.. +||+++..|.++... +.
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 35678999999999999998876 674 46777777 9999988731 789999999998322 22
Q ss_pred -cEEEeccccccCChhH--------HHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 -DAILMKWILHCWDDDH--------CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~--------~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|+.- ++|+. ...+-+-+++.|+++|.+++.-.
T Consensus 366 fD~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 366 FDVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred ccEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 888763 33322 23567788999999999998653
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.28 E-value=0.00057 Score=58.48 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=68.3
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc----hhHHHhCCC---CCCcEEEecCCCC-C-CCC-CcEEEecccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL----PHVVQDAPS---YAGVEHVGGNMFE-S-VPE-GDAILMKWILHC 267 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~----~~~~~~a~~---~~~v~~~~~d~~~-~-~~~-~D~i~~~~vlh~ 267 (360)
+.+++|||.|.|.-+.-++=.+|+.+++.+|. -..++.+.. .++++++++-+.+ . .+. .|+|+++-+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 58999999999999999998999999999995 233333332 3679999998887 3 234 7999987654
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
....++.-+...+|+||+++.
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchh
Confidence 234567788889999988764
No 213
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.24 E-value=0.0013 Score=52.89 Aligned_cols=96 Identities=16% Similarity=0.253 Sum_probs=62.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhh----CCCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCCC-CCCC-cE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFES-VPEG-DA 258 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~~-~~~~-D~ 258 (360)
..+..+|+|+|||.|+++..++.. .++.+++++|. +..++.+... .++++..+++.+. .... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 456789999999999999998882 27889999997 6666655432 3466666665542 2333 77
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
++.-+.--+++ ..+|+...+ |+...+++-++-
T Consensus 103 ~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 103 LVGLHACGDLS----DRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEeecccchH----HHHHHHHHH---cCCCEEEEcCCc
Confidence 77655444333 345666555 666666655443
No 214
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.24 E-value=0.0027 Score=53.46 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=74.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-----CCCcEEEec---CCCCCCCCC--cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGG---NMFESVPEG--DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~---d~~~~~~~~--D~i~~~~vl 265 (360)
.++.|||.||=|-|-....+.++-|..+.+.---|++.++-+. +.+|-...| |..+.+|+. |-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5679999999999999999999999988876655888776654 356766666 444456654 877653322
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.+ -++...+.+.+.+.|||+|++-......
T Consensus 180 e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 180 EL--YEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred hH--HHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 22 2578889999999999999987766443
No 215
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=97.21 E-value=0.00075 Score=46.78 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=48.2
Q ss_pred HHhhChhhHhhhCCC--CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 44 AIQLGVFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 44 a~~lglfd~L~~~g~--~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
..+-.|+..|...|+ +|+.+||+++|+ +...+++.|..|...|+|.... ..+..|+++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~-~~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG-GTPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCceEeec
Confidence 345567888888776 999999999999 8889999999999999999742 1346777664
No 216
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.20 E-value=0.0028 Score=51.23 Aligned_cols=95 Identities=19% Similarity=0.332 Sum_probs=63.6
Q ss_pred EEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC---CC---cEEEecCCCC---CCCC--C-cEEEeccccc
Q 018145 201 LVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY---AG---VEHVGGNMFE---SVPE--G-DAILMKWILH 266 (360)
Q Consensus 201 vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~~---v~~~~~d~~~---~~~~--~-D~i~~~~vlh 266 (360)
++|+|||+|... .+....+. ..++++|. +.++..++.. .. +.+..+|... ++.. . |++......|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 33333333 36777887 5555543321 11 5778887664 3443 3 9994444444
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
+ .+ ....++.+.+.++|+|.+++.+.....
T Consensus 131 ~-~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 L-LP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred c-CC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4 33 568899999999999999998876543
No 217
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00017 Score=57.71 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=67.2
Q ss_pred cceEEEEcCCcc-hHHHHHHhhCCCCeEEEecc-hhHHHhCCC---------CCCcEEEecCCCCC--CC-C--CcEEEe
Q 018145 198 VERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFES--VP-E--GDAILM 261 (360)
Q Consensus 198 ~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~--~~-~--~D~i~~ 261 (360)
+.+||++|+|.- -.+..++..-|...+...|- ...++..++ ..++..+..+.... +. . .|+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 478999999954 44455666667888888886 444444332 13344444444442 11 2 299999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+.++.. ++....+.+.|+..|+|.|+-++.-|-+
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 999975 6788899999999999999977766543
No 218
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.16 E-value=0.0068 Score=56.07 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=80.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHh--------hC--------CCCeEEEecchh--HHHhCCC----------CCC--cEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITS--------KY--------PQIKAVNFDLPH--VVQDAPS----------YAG--VEH 244 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~--------~~--------p~~~~~~~D~~~--~~~~a~~----------~~~--v~~ 244 (360)
.++..+|+|+||.+|..+..+.. ++ |.+.++.-|+|. --...+. ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45678999999999988775433 22 235677778742 1111111 122 456
Q ss_pred EecCCCC-CCCCC--cEEEeccccccCCh-------------------------------------hHHHHHHHHHHHhC
Q 018145 245 VGGNMFE-SVPEG--DAILMKWILHCWDD-------------------------------------DHCLRILKNCYKAV 284 (360)
Q Consensus 245 ~~~d~~~-~~~~~--D~i~~~~vlh~~~~-------------------------------------~~~~~~L~~i~~~L 284 (360)
+.+.|.+ -+|.. |+++++++||+++. .|...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 7789998 57776 99999999998762 12233444455679
Q ss_pred CCCcEEEEEeeecCCCCCCch--hhhhhhhhhHHHhhhcCCC--------------ccCCHHHHHHHHHHcC-CceeeE
Q 018145 285 PGNGKVIVMNSIVPEIPEVSS--AARETSLLDVLLMTRDGGG--------------RERTKKEYTELAIAAG-FKGINF 346 (360)
Q Consensus 285 kpgG~lli~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------------~~~t~~e~~~ll~~aG-f~~~~~ 346 (360)
+|||++++.-...++...... ...+....+.++.... .| -.++.+|+++.+++.| |++.++
T Consensus 174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~-eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~l 251 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVA-EGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKL 251 (334)
T ss_dssp EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHH-TTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEE
T ss_pred ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHH-cCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEE
Confidence 999999999888766211110 0001111111111111 22 2258999999999987 555333
No 219
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.14 E-value=0.0025 Score=58.08 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCC--CC-cEEEeccccccCChhH
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP--EG-DAILMKWILHCWDDDH 272 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~--~~-D~i~~~~vlh~~~~~~ 272 (360)
.++.++|||||++|.++..++++ +.+++++|...+.......++|++..+|.+...| .. |++++-.+..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------ 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC------
Confidence 56789999999999999999998 4589999976666666667899999999988433 33 9998866543
Q ss_pred HHHHHHHHHHhCCCC-cEEEEEeeecC
Q 018145 273 CLRILKNCYKAVPGN-GKVIVMNSIVP 298 (360)
Q Consensus 273 ~~~~L~~i~~~Lkpg-G~lli~e~~~~ 298 (360)
..++.+-+.++|..| .+-.|...-.+
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEEcC
Confidence 235677788888777 33444444333
No 220
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.12 E-value=0.00033 Score=65.37 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=41.9
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 251 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~ 251 (360)
.+|||++||+|.++..+++... +++++|. +++++.++++ .+++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988864 7888887 8888877653 368899988765
No 221
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.10 E-value=0.0068 Score=51.75 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=86.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-h----hHHHhCCCCCCcEEEecCCCCCC-----CCC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-P----HVVQDAPSYAGVEHVGGNMFESV-----PEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~-----~~~-D~i~~~ 262 (360)
++++.+||-+|.++|.....+..--. +..+.+++. | +.++.|+++++|-=+-.|+..|. -+. |+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 67889999999999999999888754 667777766 4 56777777888888888888742 123 888874
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
= -+ +++..-++.++..-||+||.+++.=-...-+...+.. . .-.+-.+.|++.||+
T Consensus 151 V-aQ---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~-------------------~-vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 V-AQ---PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE-------------------E-VFAEEVKKLKEEGFK 206 (229)
T ss_dssp --SS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH-------------------H-HHHHHHHHHHCTTCE
T ss_pred C-CC---hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH-------------------H-HHHHHHHHHHHcCCC
Confidence 3 22 3466778889999999999999865332111100000 0 011224556778999
Q ss_pred eeeEEecCC
Q 018145 343 GINFASCVC 351 (360)
Q Consensus 343 ~~~~~~~~~ 351 (360)
..+.+.+.+
T Consensus 207 ~~e~i~LeP 215 (229)
T PF01269_consen 207 PLEQITLEP 215 (229)
T ss_dssp EEEEEE-TT
T ss_pred hheEeccCC
Confidence 999988863
No 222
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.09 E-value=0.00033 Score=59.53 Aligned_cols=90 Identities=22% Similarity=0.325 Sum_probs=64.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC--cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG--DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~--D~i~~~~vl 265 (360)
.++.+|+|.-||.|.++..+++..+..+++..|+ |..++..++. .++....+|..+-.+.. |-|++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l-- 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL-- 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE----
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC--
Confidence 4678999999999999999999877888999999 8877765432 57899999988733333 9888754
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEE
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
| +....+|..+.+.+++||.+.
T Consensus 178 ---p-~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 ---P-ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---T-SSGGGGHHHHHHHEEEEEEEE
T ss_pred ---h-HHHHHHHHHHHHHhcCCcEEE
Confidence 2 233467888999999998764
No 223
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.026 Score=47.31 Aligned_cols=133 Identities=13% Similarity=0.118 Sum_probs=91.7
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-----hhHHHhCCCCCCcEEEecCCCCCCC-----CC-cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFESVP-----EG-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~~~~-----~~-D~i~~~~ 263 (360)
++++.+||=+|..+|.....+..-.++-.+.+++. .+.+..|++++++-=+-+|+..|.. +. |+|+.-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D- 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD- 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-
Confidence 67899999999999999999999888666666654 3566677778888888888877522 33 988763
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCce
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 343 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 343 (360)
+-+ ++++.-+..++..-||+||++++.--.+.-+..... ..--.++ .+-|++.||++
T Consensus 153 VAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp-------------------~~vf~~e-v~kL~~~~f~i 209 (231)
T COG1889 153 VAQ---PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP-------------------EEVFKDE-VEKLEEGGFEI 209 (231)
T ss_pred cCC---chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH-------------------HHHHHHH-HHHHHhcCcee
Confidence 221 345666788899999999988876554433211110 0001223 34567789999
Q ss_pred eeEEecCC
Q 018145 344 INFASCVC 351 (360)
Q Consensus 344 ~~~~~~~~ 351 (360)
.++..+.+
T Consensus 210 ~e~~~LeP 217 (231)
T COG1889 210 LEVVDLEP 217 (231)
T ss_pred eEEeccCC
Confidence 99988763
No 224
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.06 E-value=0.0024 Score=57.08 Aligned_cols=96 Identities=15% Similarity=0.280 Sum_probs=62.2
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCC----CCCCcEEEecCCCC-CCCC----
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAP----SYAGVEHVGGNMFE-SVPE---- 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~~~v~~~~~d~~~-~~~~---- 255 (360)
.+.+++.+. ..+...|||||+|.|.++..|++...++.++-.| +..++..+ ..++++++.+|+.+ +.+.
T Consensus 19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d-~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~ 96 (262)
T PF00398_consen 19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEID-PDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKN 96 (262)
T ss_dssp HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESS-HHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccCcceeecCc-HhHHHHHHHHhhhcccceeeecchhccccHHhhcC
Confidence 456777666 6678999999999999999999998444444444 55544433 34789999999998 5554
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCC
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPG 286 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~Lkp 286 (360)
..+.+.++.=++.+ ..++.++...-+.
T Consensus 97 ~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 97 QPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred CceEEEEEecccch----HHHHHHHhhcccc
Confidence 33334444322322 3566666664444
No 225
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.06 E-value=0.0034 Score=60.54 Aligned_cols=103 Identities=16% Similarity=0.222 Sum_probs=70.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCC------CCCcEEEecCCCC---CCCCC-cEEEe-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG-DAILM- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~~~-D~i~~- 261 (360)
.+++.+|||+.+|.|.=+..++....+ ..++..|+ +.-++..++ ..+|.+...|... ..+.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 467789999999999999999998754 57788887 444433322 1457777777654 23333 88873
Q ss_pred ---c--cccc-------cCChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 ---K--WILH-------CWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ---~--~vlh-------~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+ .++. .|+.+++ .++|.++.+.|||||+|+-.+-..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 3 2222 2333332 578999999999999997766543
No 226
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.05 E-value=0.012 Score=50.07 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=84.1
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------CCCcEEEecCCCCCCC-C-C-cEEEeccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP-E-G-DAILMKWILH 266 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~-~-~-D~i~~~~vlh 266 (360)
..++.||||-++.+.+.+.+.++..+++..|. +...+.|.+ .++++...+|-+.++. + . |+++...+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM-- 94 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM-- 94 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC--
Confidence 45599999999999999999999999999998 655555433 2688999999887543 3 3 88887763
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeE
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 346 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
.-.-+..+|..-.+-|+.=-++++ .| + . ...++++||.+.+|.++.-
T Consensus 95 --GG~lI~~ILee~~~~l~~~~rlIL-QP---n---------------------~------~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 95 --GGTLIREILEEGKEKLKGVERLIL-QP---N---------------------I------HTYELREWLSANSYEIKAE 141 (226)
T ss_pred --cHHHHHHHHHHhhhhhcCcceEEE-CC---C---------------------C------CHHHHHHHHHhCCceeeee
Confidence 445677888888877764334443 11 1 1 3456788888888887665
Q ss_pred EecC
Q 018145 347 ASCV 350 (360)
Q Consensus 347 ~~~~ 350 (360)
.-+.
T Consensus 142 ~ile 145 (226)
T COG2384 142 TILE 145 (226)
T ss_pred eeec
Confidence 5444
No 227
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.02 E-value=0.00077 Score=62.61 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=77.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC--cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~--D~i~~~~ 263 (360)
..++..++|+|||.|.....+..- .....++++. +.-+..+... ..-.++.+|+.+ ++++. |.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 345568999999999999877654 4566777776 4444333221 345568889988 67765 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 300 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~ 300 (360)
+..|.++ ...++++++++++|||+++..|.+....
T Consensus 187 ~~~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 187 VVCHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ecccCCc--HHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 9998774 4689999999999999999999877544
No 228
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=97.01 E-value=0.0011 Score=48.76 Aligned_cols=58 Identities=28% Similarity=0.390 Sum_probs=48.2
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
-+.|++.|... ++.|+.+||+.+|+ +..-+.+.|+.|+..|++.+. ..++.|++++..
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~--~~~~~y~l~~~~ 65 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD--GQNGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec--CCCCceeecHHH
Confidence 45678888775 58999999999999 899999999999999999974 245678887643
No 229
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.017 Score=51.61 Aligned_cols=138 Identities=12% Similarity=0.212 Sum_probs=88.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc------hhHHHhCCC--------------------------------
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL------PHVVQDAPS-------------------------------- 238 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~~-------------------------------- 238 (360)
...+||-=|||.|.++..|+..++.+.+--+.. .-++..++.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 357899999999999999999776665421110 111111110
Q ss_pred -------CCCcEEEecCCCC--CCCC---C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch
Q 018145 239 -------YAGVEHVGGNMFE--SVPE---G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS 305 (360)
Q Consensus 239 -------~~~v~~~~~d~~~--~~~~---~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~ 305 (360)
.+....-.|||.+ ..+. . |+|+.++.+- +...+...|..|+..|||||..+=+-|..-.-.....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 0224556789887 2333 2 9998876654 3567889999999999999988766554422100000
Q ss_pred hhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 306 AARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
. . ...+-+.+.+++..+.+.-||++++-...
T Consensus 308 ~-------~------~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 308 V-------E------NEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred C-------c------ccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 0 0 01244568999999999999998776533
No 230
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.88 E-value=0.0033 Score=52.77 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCe---------EEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCC-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIK---------AVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE- 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~- 255 (360)
++++..|+|-=||+|.+..+.+...++.. +++.|+ +.+++.++.+ ..+.+...|+.+ +.+.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 66778999999999999998877777766 788887 8888776543 358899999988 6443
Q ss_pred C-cEEEecccccc-CCh-hHH----HHHHHHHHHhCCCCcEE
Q 018145 256 G-DAILMKWILHC-WDD-DHC----LRILKNCYKAVPGNGKV 290 (360)
Q Consensus 256 ~-D~i~~~~vlh~-~~~-~~~----~~~L~~i~~~LkpgG~l 290 (360)
. |+|++.--.-. .+. .+. ..+++.+.+.|+|...+
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 3 99988432211 111 122 35678888999983333
No 231
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=96.85 E-value=0.00066 Score=44.31 Aligned_cols=44 Identities=32% Similarity=0.462 Sum_probs=37.9
Q ss_pred hChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 47 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+.|++.|...+ +.|+.|||+++|+ +..-+.|+|..|+..|+|.+
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence 45677777754 6899999999999 89999999999999999996
No 232
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.019 Score=49.42 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=90.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc--hhHHHhCCCCCCcEEEec-CCCCC----CCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSYAGVEHVGG-NMFES----VPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~-d~~~~----~~~~-D~ 258 (360)
..++.+.-..++..+||||..||.++..++++. ..+++++|. -+.....+..+||...+. |+..- +.+. |+
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe
Confidence 444555523467999999999999999988874 345666665 455555666678766655 44331 2222 78
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE-eeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM-NSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+++--.+- ....+|-.+...++|++-++.. -|-....+... +.-....+ +.....-..++.+++.
T Consensus 148 ~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v--~kkGvv~d-------~~~~~~v~~~i~~~~~ 213 (245)
T COG1189 148 IVIDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQV--GKKGVVRD-------PKLHAEVLSKIENFAK 213 (245)
T ss_pred EEEEeehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhc--CcCceecC-------cchHHHHHHHHHHHHh
Confidence 77643331 3457899999999999776653 33222110000 00000000 1122234577889999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
+.||++..+...+
T Consensus 214 ~~g~~~~gl~~Sp 226 (245)
T COG1189 214 ELGFQVKGLIKSP 226 (245)
T ss_pred hcCcEEeeeEccC
Confidence 9999999988765
No 233
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.0048 Score=53.12 Aligned_cols=98 Identities=16% Similarity=0.294 Sum_probs=75.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCC----CeEEEecc-hhHHHh-----CCCCCC--cEEEecCCCC---CCCCC---c
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDL-PHVVQD-----APSYAG--VEHVGGNMFE---SVPEG---D 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~-----a~~~~~--v~~~~~d~~~---~~~~~---D 257 (360)
.++..++|+|.|+..=+..++..+.. ++++-+|. ..+++. .++++. |.-+++|+.. ..|.+ =
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888888755 67888887 444442 233455 4456677765 24443 4
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
.++..+.|-+++++++..+|.+++.+|+||-++++-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 557789999999999999999999999999888884
No 234
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.82 E-value=0.0058 Score=55.45 Aligned_cols=158 Identities=14% Similarity=0.155 Sum_probs=98.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecchhHHHhCCC----C-----CCcEEEecCCCC-CCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPS----Y-----AGVEHVGGNMFE-SVP 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~----~-----~~v~~~~~d~~~-~~~ 254 (360)
+.+.+.+. .+...|+-+|||-=.-+..+ ..| .+++.-+|+|++++.=++ . .+++++..|+.+ +.+
T Consensus 83 ~~~~~~~~--~g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~ 158 (297)
T COG3315 83 DFVRAALD--AGIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWP 158 (297)
T ss_pred HHHHHHHH--hcccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchH
Confidence 33444443 33688999999855444333 234 478889999999986433 2 279999999995 433
Q ss_pred C-----C------cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch-hhhhhhhhhHHHhhhcC
Q 018145 255 E-----G------DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS-AARETSLLDVLLMTRDG 322 (360)
Q Consensus 255 ~-----~------D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 322 (360)
. | -++++-.++.+++++.+.++|..|...+.||..++.............. .................
T Consensus 159 ~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 238 (297)
T COG3315 159 QALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGEL 238 (297)
T ss_pred HHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccc
Confidence 1 1 5889999999999999999999999999999888876541211100000 00000000000000000
Q ss_pred CCccCCHHHHHHHHHHcCCceeeEE
Q 018145 323 GGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 323 ~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
.-......++..++.+.||......
T Consensus 239 ~~~~~~~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 239 VYFGDDPAEIETWLAERGWRSTLNR 263 (297)
T ss_pred eeccCCHHHHHHHHHhcCEEEEecC
Confidence 1112357899999999999977764
No 235
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.81 E-value=0.00072 Score=46.89 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=45.1
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
.+..++..|...|+.|+++||+.+|+ +...+.+.|+-|...|+|.+.. ..+..|..
T Consensus 9 ~E~~vy~~Ll~~~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~~-~~~~~Y~a 64 (68)
T PF01978_consen 9 NEAKVYLALLKNGPATAEEIAEELGI----SRSTVYRALKSLEEKGLVEREE-GRPKVYRA 64 (68)
T ss_dssp HHHHHHHHHHHHCHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEEE-ECCEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc-CceEEEEE
Confidence 45567777765579999999999999 9999999999999999999864 23334543
No 236
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.0089 Score=49.31 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=69.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEec-CCCCC---------CCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGG-NMFES---------VPE 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-d~~~~---------~~~ 255 (360)
+|-+.+.-+.+..+|||+||..|.++.-..++. |+..+.++|+-.+. .-.+++++.+ |+.++ .|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 344555546788999999999999998777766 99999999973322 2245666666 65543 232
Q ss_pred C--cEEEeccc--------ccc-CChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 256 G--DAILMKWI--------LHC-WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 256 ~--D~i~~~~v--------lh~-~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
- |+|++-.. +.| ...+-|..+|.-....++|+|.+++--+.-
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 2 88776321 111 112345566667777888999988765543
No 237
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0014 Score=51.64 Aligned_cols=67 Identities=18% Similarity=0.356 Sum_probs=48.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCC-C--cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G--DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~-~--D~i~~~~vl 265 (360)
.+.+++|+|||.|.+. ++..+|. -.++++|+ |+.++.+.++ -++++...|+.+..+. + |..+.+--+
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 4689999999999998 3444544 56899999 9999988765 2468888888884333 3 777665433
No 238
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.74 E-value=0.002 Score=56.81 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=60.2
Q ss_pred EEEecCCCC--CC------CC-CcEEEeccccccCC--hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh
Q 018145 243 EHVGGNMFE--SV------PE-GDAILMKWILHCWD--DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS 311 (360)
Q Consensus 243 ~~~~~d~~~--~~------~~-~D~i~~~~vlh~~~--~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~ 311 (360)
.++..|+.+ ++ |. .|+|++..+|.... .+.-.+.++++.++|||||.|++........ +..
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~--------Y~v 208 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY--------YMV 208 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE--------EEE
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee--------EEE
Confidence 377788877 22 23 49999999998754 3456688999999999999999988754321 000
Q ss_pred hhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 312 LLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 312 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
.-. .......+++.+++.++++||.+.+...
T Consensus 209 G~~------~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 209 GGH------KFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp TTE------EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred CCE------ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 000 0011234889999999999999988875
No 239
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0084 Score=52.42 Aligned_cols=105 Identities=13% Similarity=0.214 Sum_probs=74.8
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhH----HHhCCCC---CCcEEEecCCCC-CCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHV----VQDAPSY---AGVEHVGGNMFE-SVP 254 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~---~~v~~~~~d~~~-~~~ 254 (360)
...|+..++ ..++.+|++-|.|+|.++.++++.. |.-+..-+|. ..- .+..+++ +.|++.+-|+.. -++
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 346677777 7889999999999999999999987 6777877776 333 3333333 679999999987 333
Q ss_pred --C--CcEEEeccccccCChhHHHHHHHHHHHhCCCCc-EEEEEeeec
Q 018145 255 --E--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNG-KVIVMNSIV 297 (360)
Q Consensus 255 --~--~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG-~lli~e~~~ 297 (360)
+ +|.|++ ++|.+. ..+-.++++||-+| +|+...++.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccHHH
Confidence 2 299987 344432 34667777888664 777766655
No 240
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.69 E-value=0.0055 Score=54.60 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=56.8
Q ss_pred CcceEEEEcCCcchHHHH-HHhh-CCCCeEEEecc-hhHHHhCCC--------CCCcEEEecCCCC-C--CCCCcEEEec
Q 018145 197 NVERLVDVGGGFGVTLSM-ITSK-YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-S--VPEGDAILMK 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~-l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~--~~~~D~i~~~ 262 (360)
.+.+|+=||||.=-++.- +++. .++..++++|. |.+++.+++ ..+++|+.+|..+ . ..+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 457999999997755544 4443 46778888888 877777653 1679999999876 3 2334999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
...- .+.++-.++|.++.+.|+||+++++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6654 23445678999999999999988875
No 241
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.67 E-value=0.015 Score=48.40 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCCCcEEEeccccccC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILMKWILHCW 268 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~~D~i~~~~vlh~~ 268 (360)
.-.+.+|||+|.|+|-.++.-++.. ...++..|+ |......+-+ -.|.++..|...+.+..|+++.+.++++-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 4457899999999999888766654 333444555 5544444322 24678888877633344999999999875
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
+ ...+++.-..+....|-.+++-++-++.
T Consensus 156 ~--~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 156 T--EADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred h--HHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 4 4556777444444567777777776654
No 242
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.0014 Score=52.10 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=36.6
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++.+++.|+.-++-...++.+++.|||||+|-|.-+
T Consensus 49 d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 49 DAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 999999999999988889999999999999999998654
No 243
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=96.56 E-value=0.003 Score=40.37 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=38.9
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCccee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~ 93 (360)
.+..|+..|.+.|+.|..+||+.+|+ ....+.+.++-|...|+|+
T Consensus 4 ~~~~Il~~l~~~~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLRENPRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHCTTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 35678889999889999999999999 8999999999999999985
No 244
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.46 E-value=0.0036 Score=43.20 Aligned_cols=58 Identities=19% Similarity=0.390 Sum_probs=40.9
Q ss_pred ChhhHhh-hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhc
Q 018145 48 GVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVS 109 (360)
Q Consensus 48 glfd~L~-~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s 109 (360)
-++..|. ..++.|..+|++.+++ +...+.+.++.|...|+|++.....+ ..|++|+.|
T Consensus 7 ~vL~~l~~~~~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 7 QVLRALAHSDGPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHT--TS-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHccCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 3444555 4469999999999999 89999999999999999977643222 358888764
No 245
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.40 E-value=0.0035 Score=42.38 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=43.9
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.--.++.|++.|...+|.|+.+||+.+|+ ++.-+.+-|+.|...|+|+..
T Consensus 5 ~aL~~p~R~~Il~~L~~~~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 5 KALSDPTRLRILRLLASNGPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHTSHHHHHHHHHHHHCSTBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHhcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 34444567888888855469999999999999 888999999999999999863
No 246
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=96.37 E-value=0.0048 Score=55.04 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=47.7
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|++.|...++.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+. .+.++|++.+..-
T Consensus 17 l~IL~~l~~~~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~--~~~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEEREIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQE--GESEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEecHHHH
Confidence 445566655568999999999999 899999999999999999974 3567899997643
No 247
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.37 E-value=0.0037 Score=50.16 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=41.4
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 251 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~ 251 (360)
.|+|||||.|.++..+++.+|..+++.+|. |.+.+.+++. ++++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999997 7777655432 347777766554
No 248
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.34 E-value=0.0078 Score=55.25 Aligned_cols=101 Identities=15% Similarity=0.257 Sum_probs=65.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhh-------CCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC-C-CC--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-S-VP-- 254 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~-~~-- 254 (360)
..+..+|+|-.||+|.++.++.+. .+...++++|+ +.++..++-. ....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456779999999999999888774 37788889988 6666554321 234688889876 3 22
Q ss_pred CC-cEEEec--cccccCCh-----------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 255 EG-DAILMK--WILHCWDD-----------------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 255 ~~-D~i~~~--~vlh~~~~-----------------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.. |+|+++ +....|.. ..-..++.++.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 22 999873 22221110 1112578999999999999888765
No 249
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.33 E-value=0.0029 Score=40.24 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=38.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCccee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~ 93 (360)
++.|...|.+ ||.++.+|++.+|+ ++..+.+-|+.|...|+|.
T Consensus 4 R~~Il~~L~~-~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE-GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT-SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh-CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 5677888888 79999999999999 9999999999999999986
No 250
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.30 E-value=0.003 Score=59.25 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=41.3
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 251 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~ 251 (360)
.+|||++||+|.++..+++... +++++|. +.+++.++++ .+++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988764 6888887 8888877653 468899888754
No 251
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.29 E-value=0.0018 Score=49.20 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=39.7
Q ss_pred EEEcCCcchHHHHHHhhCCCC---eEEEecc-h---hHHHhCCC---CCCcEEEecCCCCC---CC-CC-cEEEeccccc
Q 018145 202 VDVGGGFGVTLSMITSKYPQI---KAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFES---VP-EG-DAILMKWILH 266 (360)
Q Consensus 202 LDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~v~~~~~d~~~~---~~-~~-D~i~~~~vlh 266 (360)
||||+..|..+..+++..+.. +++.+|. + ..-+..++ ..+++++.+|..+. ++ .. |++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988877654 5788887 4 23333332 25799999998652 33 23 9888743 23
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. .+....-++.+.+.|+|||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 3466778999999999999988865
No 252
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.28 E-value=0.0013 Score=53.89 Aligned_cols=62 Identities=18% Similarity=0.386 Sum_probs=42.0
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCC---CC--C-CcEEEec
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFES---VP--E-GDAILMK 262 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~---~~--~-~D~i~~~ 262 (360)
.|+|+-||.|..+..+++.+..+.++..| |..++.++.. ++|+++.+|+++. .. . .|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid-~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDID-PERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES--HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999997664444444 7777766542 5899999999872 22 2 3888764
No 253
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.27 E-value=0.0058 Score=54.01 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=47.8
Q ss_pred hhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 46 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
-+.|++.|...+ ++++.|||+++|+ +..-+.|+|..|+..|++.++ ..+++|.+++..-
T Consensus 6 al~iL~~l~~~~~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d--~~~g~Y~Lg~~~~ 65 (246)
T COG1414 6 ALAILDLLAEGPGGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD--PEDGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEeehHHHH
Confidence 356777777742 3569999999999 899999999999999999985 3356899997643
No 254
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=96.25 E-value=0.01 Score=46.05 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=54.6
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhcC
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVSN 115 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~~ 115 (360)
..+..++..|...|+.|..+||+.+++ +...+.+.++-|+..|+|++.....+ -.+.+|+.|..+...
T Consensus 28 ~~q~~iL~~l~~~~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~~ 98 (118)
T TIGR02337 28 EQQWRILRILAEQGSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYAS 98 (118)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 445567777877779999999999999 88899999999999999998643222 268999998876653
No 255
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=96.24 E-value=0.0039 Score=44.67 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=50.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc----eeecchhchhhh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER----LYALNPVSKYFV 113 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~----~y~~t~~s~~~~ 113 (360)
++++|+..|...+..++.+|.+.+|+ +...+...|+.|...|+|...-...++ .|++|+.|+...
T Consensus 1 vRl~Il~~L~~~~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~ 69 (80)
T PF13601_consen 1 VRLAILALLYANEEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAF 69 (80)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHH
T ss_pred CHHHHHHHHhhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHH
Confidence 47788888888679999999999999 889999999999999999986432222 488998887443
No 256
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.24 E-value=0.016 Score=49.54 Aligned_cols=100 Identities=16% Similarity=0.254 Sum_probs=73.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCC-------CCCCcEEEecCCCCCC----C---CC--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFESV----P---EG-- 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~~----~---~~-- 256 (360)
.-++.++||||.=+|.-+..++.+.|. .+++.+|. +...+.+. -...|+++.++..+.+ + .+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 345789999999999999999999976 67888887 55544443 2367999999887632 2 12
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
|+++.- +|-+. -.....++.+.+|+||.|++-...++.
T Consensus 151 DfaFvD----adK~n-Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVD----ADKDN-YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEc----cchHH-HHHHHHHHHhhcccccEEEEeccccCC
Confidence 888763 34443 348899999999999999886655543
No 257
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=96.16 E-value=0.036 Score=44.65 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=50.2
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
+..++..|...++.|..+||+.+++ ++..+.++++-|+..|+|.+.....+. ...+|+.|..+..
T Consensus 42 q~~vL~~l~~~~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~ 109 (144)
T PRK11512 42 QFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICE 109 (144)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHH
Confidence 4445677766678999999999999 899999999999999999986432222 3667777775543
No 258
>PHA00738 putative HTH transcription regulator
Probab=96.13 E-value=0.0094 Score=44.51 Aligned_cols=62 Identities=24% Similarity=0.224 Sum_probs=49.8
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
.++.|++.|..+++.++.+|++.+++ .++.+.+-|+.|...|+|..........|++.+...
T Consensus 13 tRr~IL~lL~~~e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~~ 74 (108)
T PHA00738 13 LRRKILELIAENYILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENSK 74 (108)
T ss_pred HHHHHHHHHHHcCCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCcc
Confidence 46788899988557999999999999 899999999999999999985322333566665544
No 259
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.13 E-value=0.019 Score=56.84 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=43.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCC--------CeEEEecc-hhHHHhCCCC----C--CcEEEecCCCCC-------C-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQ--------IKAVNFDL-PHVVQDAPSY----A--GVEHVGGNMFES-------V- 253 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~~----~--~v~~~~~d~~~~-------~- 253 (360)
...+|||.+||+|.++..+++..+. ..++++|+ +..++.++.. . .+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4579999999999999999887742 45678887 7776655432 2 355565655431 1
Q ss_pred CCCcEEEe
Q 018145 254 PEGDAILM 261 (360)
Q Consensus 254 ~~~D~i~~ 261 (360)
+..|+|+.
T Consensus 111 ~~fD~IIg 118 (524)
T TIGR02987 111 DLFDIVIT 118 (524)
T ss_pred CcccEEEe
Confidence 12399987
No 260
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=96.13 E-value=0.0043 Score=44.12 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=44.2
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
|+..+.. |+.+..+|+..+|+ +...+.+.|+.|...|+|. ..++.|.+|+.|..++.
T Consensus 11 IL~~l~~-~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~----~~~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 11 ILKILSK-GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIK----KKDGKYRLTEKGKEFLE 67 (77)
T ss_dssp HHHHH-T-T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEE----EETTEEEE-HHHHHHHH
T ss_pred HHHHHHc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCee----CCCCEEEECccHHHHHH
Confidence 4455544 69999999999999 9999999999999999997 47899999999987764
No 261
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.12 E-value=0.011 Score=42.66 Aligned_cols=48 Identities=29% Similarity=0.386 Sum_probs=38.6
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|.++||+.+++ ++..++++++.|...|+|.... ..++.|.++...+
T Consensus 25 ~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~-G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 25 PVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR-GRGGGYRLARPPE 72 (83)
T ss_dssp -BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET-STTSEEEESS-CC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC-CCCCceeecCCHH
Confidence 6999999999999 9999999999999999998753 3457888775443
No 262
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.12 E-value=0.01 Score=45.72 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
...+|.--.++.|+..|...|+.++.+|++.+++ .+..+.+-|+.|...|+|........-.|++.+.
T Consensus 9 ~fkaLadptRl~IL~~L~~~~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~ 76 (117)
T PRK10141 9 LFKILSDETRLGIVLLLRESGELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQGKWVHYRLSPH 76 (117)
T ss_pred HHHHhCCHHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEcCEEEEEECch
Confidence 3445555668888888876568999999999999 8899999999999999998753222235777653
No 263
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.07 E-value=0.041 Score=56.31 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=71.6
Q ss_pred hHHHHHhhcccC-CCcceEEEEcCCcchHHHHHHhh------------C------------------------------C
Q 018145 184 AMERILEHYEGF-QNVERLVDVGGGFGVTLSMITSK------------Y------------------------------P 220 (360)
Q Consensus 184 ~~~~i~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~------------~------------------------------p 220 (360)
.+..++.... + ++...++|-.||+|.++++.+.. | .
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 4455555433 6 45689999999999999886542 1 1
Q ss_pred CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCC---C-CcEEEeccccc-cCC-hhHHHHHHHHHHHhCC
Q 018145 221 QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP---E-GDAILMKWILH-CWD-DDHCLRILKNCYKAVP 285 (360)
Q Consensus 221 ~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~---~-~D~i~~~~vlh-~~~-~~~~~~~L~~i~~~Lk 285 (360)
..+++++|+ +.+++.|+.+ ++|++..+|+.+ +.+ . .|+|+++=-.- .+. ..+...+.+.+-+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 235789998 8888887653 458999999987 332 1 39998862221 122 2344445444444444
Q ss_pred ---CCcEEEEEee
Q 018145 286 ---GNGKVIVMNS 295 (360)
Q Consensus 286 ---pgG~lli~e~ 295 (360)
||++++++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8988887664
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.04 E-value=0.014 Score=50.88 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=65.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----CCCcEEEecCCCCCCCCC--cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFESVPEG--DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~~~--D~i~~~~vlh~ 267 (360)
..+.+|+|||||---++.-.....|+.++++.|+ ..+++.... ....+....|.....|.. |+.++.-++|-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4589999999999999998888888899999998 666665433 256788888999865544 99999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+..+.. ..--++.+.++ .-.++|.-+..
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPtr 211 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPTR 211 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES-
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEecccc
Confidence 765543 33334444553 24555555544
No 265
>PRK11569 transcriptional repressor IclR; Provisional
Probab=96.00 E-value=0.0099 Score=53.53 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=47.0
Q ss_pred hChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 47 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+.|++.|.+. ++.|+.|||+.+|+ +..-+.|+|..|+..|||.+. .+.++|++.+..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQV--GELGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEecCHHH
Confidence 4456666653 48999999999999 899999999999999999974 356889988654
No 266
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.19 Score=45.07 Aligned_cols=144 Identities=15% Similarity=0.220 Sum_probs=97.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC--CCCeEEEecchhHHHhCCC---C-------------------------CCcEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDLPHVVQDAPS---Y-------------------------AGVEHV 245 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~---~-------------------------~~v~~~ 245 (360)
.+...|+.+|||.-.+...+...+ +.++++.+|.|.+++.--. . ++....
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeee
Confidence 466899999999999999999988 7789999999876663210 0 223444
Q ss_pred ecCCCC--CCC----C-----C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh
Q 018145 246 GGNMFE--SVP----E-----G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312 (360)
Q Consensus 246 ~~d~~~--~~~----~-----~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~ 312 (360)
..|..+ ++. . . -+++.--+|-+++++....+++-+.+.. |.+.+++.|.+.+.++ +...
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~-------Fg~v 237 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDR-------FGKV 237 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCCh-------HHHH
Confidence 444442 111 1 1 3566677888889999999999999888 5678888898886652 2222
Q ss_pred hhHHHhhhcCCC------ccCCHHHHHHHHHHcCCceeeEEec
Q 018145 313 LDVLLMTRDGGG------RERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 313 ~~~~~~~~~~~~------~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
+--.... .+. ...|.+..++-|.++||+.+.+.++
T Consensus 238 M~~nlk~--r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 238 MLANLKR--RGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHHHHh--cCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 2111110 111 2247888889999999999988765
No 267
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=95.96 E-value=0.011 Score=53.21 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=46.8
Q ss_pred hChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 47 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+.|++.|.+. ++.|+.|||+.+|+ +..-+.|+|..|+..|+|.++ ...+.|.+....
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQD--SQLGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEEecHHH
Confidence 4456666553 37999999999999 899999999999999999875 356789988654
No 268
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.95 E-value=0.032 Score=53.32 Aligned_cols=127 Identities=17% Similarity=0.281 Sum_probs=82.4
Q ss_pred ChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCC--CcceEEEEcCCcchHHHHHHhh----CCCCeEEEecc-h
Q 018145 158 HIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-P 230 (360)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~ 230 (360)
..|+.+++++-....|.++. ...+.+..+..+ ....|+-+|+|.|-+..+.++. ...++.+.++. |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 34677778887777676544 345566655322 2678899999999887776654 23456677776 6
Q ss_pred hHHHhCCCC------CCcEEEecCCCC-CCC-C-CcEEEeccccccCC-hhHHHHHHHHHHHhCCCCcEEEE
Q 018145 231 HVVQDAPSY------AGVEHVGGNMFE-SVP-E-GDAILMKWILHCWD-DDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 231 ~~~~~a~~~------~~v~~~~~d~~~-~~~-~-~D~i~~~~vlh~~~-~~~~~~~L~~i~~~LkpgG~lli 292 (360)
.++...+.. .+|+++..|+.. .-| + .|++++-. |--+. .+--.+.|..+-+.|||+|.-+=
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 655543322 689999999998 433 3 39886522 11122 22234568899999999986553
No 269
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.93 E-value=0.011 Score=53.21 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=69.8
Q ss_pred cceEEEEcCCcchHHHHHHhhC--------------------CCCeEEEecc---hhHHHhCCC----C-----------
Q 018145 198 VERLVDVGGGFGVTLSMITSKY--------------------PQIKAVNFDL---PHVVQDAPS----Y----------- 239 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----~----------- 239 (360)
..+||-||||.|.-..+++..+ +.++++.+|+ ..++..... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999987766666554 2257788887 345543211 0
Q ss_pred --------CCcEEEecCCCC-CCC--------CC-cEEEeccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 240 --------AGVEHVGGNMFE-SVP--------EG-DAILMKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 240 --------~~v~~~~~d~~~-~~~--------~~-D~i~~~~vlh~~---~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
-.++|...|++. ..+ +. |+|.+-+.++.+ +..+..++|.++...++||..|+|+|.-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 147899999987 321 12 888776666553 3446678999999999999999999953
No 270
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=95.91 E-value=0.015 Score=47.90 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=46.5
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+++.+.+.+. |. ...++.|+++||+.+++ ++..++++|..|...|+|.... ..++.|.+....
T Consensus 9 yAl~~l~~lA-~~--~~~~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r-G~~GGy~Lar~p 71 (164)
T PRK10857 9 YAVTAMLDVA-LN--SEAGPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR-GPGGGYLLGKDA 71 (164)
T ss_pred HHHHHHHHHH-hC--CCCCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCCeeccCCH
Confidence 3445555544 21 22248999999999999 9999999999999999999743 355678776443
No 271
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=95.84 E-value=0.03 Score=38.29 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
++.|..+||+.+|+ +...+.+.|+.|...|+|... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~---~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR---GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec---CCCeEEeCC
Confidence 58999999999999 889999999999999999962 336787654
No 272
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.83 E-value=0.015 Score=45.03 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=40.1
Q ss_pred hhChhhHhh-hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~-~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..+|.+|- ..||.|+++||+.++. +..-+.+-|+-|...|+|.+.
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Re 75 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVERE 75 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeee
Confidence 455666666 5689999999999999 899999999999999999985
No 273
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.11 Score=47.61 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=72.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEec-CCCC-CCCCC--cEEEe--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGG-NMFE-SVPEG--DAILM-- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~-d~~~-~~~~~--D~i~~-- 261 (360)
..++..|||==||||.++.+..- -++++++.|+ ..|++-++.+ ....+..+ |+.+ ++++. |.|.+
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 56678999999999999987544 4788899998 7888888764 34445555 8887 77763 87765
Q ss_pred ---ccc-cccCC-hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 ---KWI-LHCWD-DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ---~~v-lh~~~-~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+. ..-.. ++-..++|+.+.+.||+||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 111 22111 34466889999999999999998665
No 274
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.81 E-value=0.0083 Score=41.66 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=36.6
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|-+.|...|.+|..+||..+++ ++..++.+|+.|+..|.|...
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 5677878789999999999999 999999999999999999974
No 275
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=95.76 E-value=0.019 Score=46.13 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=46.3
Q ss_pred HhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 52 ~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
.+...|+.++.+||+.+++ ++..+.+.++.|...|+|.+ .....|.+|+.|..+.
T Consensus 16 l~~~~~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~---~~~~~i~LT~~G~~~a 70 (142)
T PRK03902 16 LIEEKGYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIY---EKYRGLVLTPKGKKIG 70 (142)
T ss_pred HHhcCCCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEE---ecCceEEECHHHHHHH
Confidence 3445578999999999999 88899999999999999986 3456799999987554
No 276
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=95.76 E-value=0.015 Score=52.07 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=49.0
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhh
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~ 112 (360)
-+.|++.|... ++.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+. .+++.|++++....+
T Consensus 13 al~iL~~l~~~~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~--~~~~~Y~Lg~~~~~l 74 (263)
T PRK09834 13 GLMVLRALNRLDGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRS--ASDDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--cCCCcEEEcHHHHHH
Confidence 34566666553 36999999999999 899999999999999999975 356789999765443
No 277
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.76 E-value=0.024 Score=51.40 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=54.4
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE 251 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~ 251 (360)
.+++++.+. ..++..++|.-+|.|..+..+++..|+.+++++|. |.+++.+++. .|+.++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456677665 56678999999999999999999998899999998 8888877653 478888888765
No 278
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=95.70 E-value=0.014 Score=51.79 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=47.2
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
-+.|++.+... ++.|+.|||+.+|+ +..-+.|+|..|+..|+|.+ +++.|++.+.-.
T Consensus 11 al~IL~~l~~~~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~----~~~~Y~lG~~~~ 68 (248)
T TIGR02431 11 GLAVIEAFGAERPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTS----DGRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----CCCEEEecHHHH
Confidence 35567777653 48999999999999 88999999999999999996 457899987543
No 279
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.67 E-value=0.044 Score=46.53 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=54.6
Q ss_pred CcceEEEEcCCcchHHHH---HHhhC-CCCeEEEecc--hhHHHhCCCC----CCcEEEecCCCCC-----CC----CC-
Q 018145 197 NVERLVDVGGGFGVTLSM---ITSKY-PQIKAVNFDL--PHVVQDAPSY----AGVEHVGGNMFES-----VP----EG- 256 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~---l~~~~-p~~~~~~~D~--~~~~~~a~~~----~~v~~~~~d~~~~-----~~----~~- 256 (360)
+|..|+++|.-.|.-+.- +++.+ +..+++++|+ +..-..+.+. +||+++.||-.++ .. ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 368999999888766654 44555 7788888887 2222222222 7999999998762 11 12
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.+|+. ..-|.. +.+.+.|+.....++||+++++-|...
T Consensus 112 ~vlVil-Ds~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVIL-DSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp SEEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ceEEEE-CCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 34443 333433 367788999999999999999977655
No 280
>PRK11050 manganese transport regulator MntR; Provisional
Probab=95.66 E-value=0.075 Score=43.24 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=47.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
|...+...++.+..+||+.+++ ++..+.++++.|...|+|.+. ....+.+|+.|..+.
T Consensus 42 I~~~l~~~~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---~~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAEVGEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---PYRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHhcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---cCCceEECchHHHHH
Confidence 5556665568999999999999 899999999999999999873 445688888877654
No 281
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=95.66 E-value=0.022 Score=45.38 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
++.|.++||+.+++ ++..++++|+.|...|+|.... ..++.|.++...
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~-G~~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR-GPGGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe-CCCCCEeccCCH
Confidence 48999999999999 9999999999999999998642 345578777543
No 282
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=95.65 E-value=0.018 Score=38.80 Aligned_cols=44 Identities=27% Similarity=0.259 Sum_probs=36.3
Q ss_pred ChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|.+.|.. .+|.|..|||+.+|+ +..-++++|..|+..|.|...
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL----SIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 45566666 569999999999999 888999999999999999864
No 283
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.62 E-value=0.044 Score=51.42 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=68.8
Q ss_pred cceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC---CC-CcEEEecccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV---PE-GDAILMKWIL 265 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~---~~-~D~i~~~~vl 265 (360)
+.+|||+-||+|..+...+.+.++ -+++..|+ |..++.++++ ..+++..+|+..-. .. .|+|.+-- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999998655 46888898 8888776543 34788888887621 12 39998743 2
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..+ ..++..+.+.+++||.|++.-
T Consensus 124 -Gs~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 -GTP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCc----HHHHHHHHHhcccCCEEEEEe
Confidence 212 358889999999999999974
No 284
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.60 E-value=0.027 Score=41.86 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=50.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
++-++..|...|+.|..+||+.+++ ++..+.+.++-|+..|+|+..... ....|.+|+.+..+..
T Consensus 12 ~~~il~~l~~~~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~ 79 (101)
T smart00347 12 QFLVLRILYEEGPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIE 79 (101)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHH
Confidence 5567777776668999999999999 888999999999999999974211 1125777777765543
No 285
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=95.58 E-value=0.014 Score=39.41 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=39.2
Q ss_pred hhChhhHhhhCCC--CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 46 QLGVFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 46 ~lglfd~L~~~g~--~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
++.++-.|...++ .|+.+||+.+++ ++..+.+.++.|+..|+|++..
T Consensus 7 q~~vL~~l~~~~~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARHPGEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHSTTSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC
Confidence 4456666777655 899999999999 8999999999999999999853
No 286
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.46 E-value=0.021 Score=36.12 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=35.3
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
+.|..+||+.+|+ +...+.+.|+.|.+.|++.. .++.|.+
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~----~~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISR----EGGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE----eCCEEEE
Confidence 7899999999999 88899999999999999985 3466754
No 287
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=95.35 E-value=0.034 Score=40.69 Aligned_cols=47 Identities=26% Similarity=0.265 Sum_probs=42.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
..+.|+..|.+.||-.+.-||..+++ +...++..++.|..+|+|++.
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 35667888888889999999999999 999999999999999999985
No 288
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.30 E-value=0.029 Score=50.86 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=49.5
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE 251 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~ 251 (360)
+..++++.+. ..++..++|.--|.|.++.++++.+|+.+++++|. |.+++.+++. +|+.++.++|.+
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 3456777776 67778999999999999999999999999999999 8899777643 678888887653
No 289
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.27 E-value=0.043 Score=50.45 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=75.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC---CCCcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV---PEGDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~---~~~D~i~~~~vl 265 (360)
.+.+|+|.=+|.|.++..+++...- +++.+|+ |..++..+++ ++|..+.||...-. +.+|-|++...-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4789999999999999999887543 3888898 8888776543 45889999998832 335999987532
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
....++-.+.+.+++||.+...+.+..+
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 3456788889999999999999987654
No 290
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=95.25 E-value=0.029 Score=48.00 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=47.8
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceeecchhchh
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKY 111 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~~t~~s~~ 111 (360)
-|...|.+.||.|+.+||+++|+ ++..+++-|+.|++.|+|+.... ...-.|++|..+..
T Consensus 15 ~il~lL~~~g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 15 RILELLKKSGPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHhccCCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 35666777789999999999999 89999999999999999987521 11124888877764
No 291
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=95.25 E-value=0.013 Score=39.20 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=39.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
++.++..|.+.|+.|..+||+.+++ ++..+.++++-|+..|+|++..
T Consensus 5 q~~iL~~l~~~~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 5 QFRILRILYENGGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc
Confidence 4445566667679999999999999 9999999999999999999854
No 292
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.065 Score=42.51 Aligned_cols=105 Identities=16% Similarity=0.229 Sum_probs=69.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
+++++.++ ..+..+.+|+|.|.|....+.++.. -...+++++ |-.+..++-+ .+++|...|.++ ++.+.
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34555555 3455899999999999888777665 345667776 6666655432 568899999998 77666
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.++++. + +.-...+-.+++.-|+.+.+++-.-+-.|
T Consensus 140 ~~vviFg-a-----es~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 140 RNVVIFG-A-----ESVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred ceEEEee-h-----HHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 444442 1 12223445577778888888887665443
No 293
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.23 E-value=0.046 Score=51.36 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=72.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCC----CC---CcEEE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV----PE---GDAIL 260 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~----~~---~D~i~ 260 (360)
.+.+|||+=|=||.++...+... ..++|.+|+ ...++.|+++ .+++|+.+|+++.+ .. .|+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 47899999999999998776653 337888998 7788877763 46899999998732 22 29998
Q ss_pred ec------cccccCC-hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 261 MK------WILHCWD-DDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 261 ~~------~vlh~~~-~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+- +-=.-|. ..+-..++..+.+.|+|||.++++...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 71 1111122 234568899999999999999987743
No 294
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=95.22 E-value=0.031 Score=47.90 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=49.7
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc-CCCc----eeecchhchhhhc
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGER----LYALNPVSKYFVS 114 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-~~~~----~y~~t~~s~~~~~ 114 (360)
..|+..|...|+.|..+||+.+|+ ++..+.+.|+.|...|+|.+... ...+ .|.+|+.+.....
T Consensus 4 ~~IL~~L~~~~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 4 EDILSYLLKQGQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 456777776679999999999999 89999999999999999987521 0112 3788888775543
No 295
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.21 E-value=0.013 Score=49.30 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=62.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C---CCC-cEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V---PEG-DAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~---~~~-D~i~~ 261 (360)
.+.++||+=||+|.++.+.+.+. ..+++.+|. +..+...+++ ++++++..|+... . ... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 36899999999999999988885 346777777 6666655442 4688999997652 1 233 99998
Q ss_pred ccccccCChhH-HHHHHHHHH--HhCCCCcEEEEEeeec
Q 018145 262 KWILHCWDDDH-CLRILKNCY--KAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~~vlh~~~~~~-~~~~L~~i~--~~LkpgG~lli~e~~~ 297 (360)
-=-... .. ...++..+. ..|+++|.+++ |...
T Consensus 121 DPPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~-E~~~ 155 (183)
T PF03602_consen 121 DPPYAK---GLYYEELLELLAENNLLNEDGLIII-EHSK 155 (183)
T ss_dssp --STTS---CHHHHHHHHHHHHTTSEEEEEEEEE-EEET
T ss_pred CCCccc---chHHHHHHHHHHHCCCCCCCEEEEE-EecC
Confidence 432221 22 356777776 78888886655 5433
No 296
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.19 E-value=0.025 Score=42.36 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=25.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFD 228 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D 228 (360)
.+...++|||||+|-+.--|.+. +.++.++|
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD 87 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGID 87 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCccccc
Confidence 45678999999999998877776 55678888
No 297
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=95.11 E-value=0.045 Score=36.79 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=40.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
|+..|. .++.|..+|++.+++ +..-+.+.|+.|...|++..........|.++.
T Consensus 2 il~~l~-~~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 55 (66)
T smart00418 2 ILKLLA-EGELCVCELAEILGL----SQSTVSHHLKKLREAGLVESRREGKRVYYSLTD 55 (66)
T ss_pred HHHHhh-cCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeeecCCEEEEEEch
Confidence 344555 358999999999999 888999999999999999965322333555554
No 298
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=95.08 E-value=0.041 Score=38.30 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=44.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
+..++..+... +.+..+|++.+++ +..-+.+.|+.|.+.|++..........|++++
T Consensus 9 ~~~il~~l~~~-~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLEG-PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHC-CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 34456666664 4999999999999 888999999999999999975322335666665
No 299
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.03 E-value=0.11 Score=49.53 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=70.2
Q ss_pred ceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhC-----CCCCCcEEEecCCCC-CCCCC--cEEEeccccccCC
Q 018145 199 ERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDA-----PSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWD 269 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a-----~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~ 269 (360)
.+++-+|||.-.+...+-+.. ++++-+.++ +.+++.. +.++...+...|+.. .+++. |+|+....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S-~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSS-SVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceecccc-HHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 489999999998887765543 444444443 4444432 334678899999988 67654 9999999998864
Q ss_pred hh--------HHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 270 DD--------HCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 270 ~~--------~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
.+ .+...+..++++|+|||+.+.+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 22 2335689999999999999998874
No 300
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=95.01 E-value=0.04 Score=43.55 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
++.|.++||+.+++ ++..++++|+.|...|+|.... ..++.|.++....
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~-g~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR-GPGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc-CCCCCccCCCCHH
Confidence 48999999999999 9999999999999999998642 2345677764443
No 301
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.95 E-value=0.1 Score=43.87 Aligned_cols=84 Identities=15% Similarity=0.289 Sum_probs=61.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC---------CCcEEEecCCCC-C----CC------CC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY---------AGVEHVGGNMFE-S----VP------EG 256 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~~v~~~~~d~~~-~----~~------~~ 256 (360)
+...|+.+|||-=.....+....++++++.+|+|++++.-++. .+++++..|+.+ . +. ..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 3458999999999999999888889999999999888764432 236789999986 2 11 12
Q ss_pred -cEEEeccccccCChhHHHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNC 280 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i 280 (360)
-++++-.++.+++++++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 578889999999999999988876
No 302
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=94.88 E-value=0.045 Score=46.88 Aligned_cols=60 Identities=27% Similarity=0.347 Sum_probs=48.7
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
.++.++..|.+.|+.|..+||+.+++ ++.-+.+.|..|...|++.+.. ..+..|.+|+.|
T Consensus 144 ~~~~IL~~l~~~g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~-~r~~~~~lT~~G 203 (203)
T TIGR01884 144 EELKVLEVLKAEGEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG-RKGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc-CCccEEEeCCCC
Confidence 34567777776568999999999999 8889999999999999999853 145678887654
No 303
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.83 E-value=0.15 Score=44.74 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=63.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---C---------CCcEEEecCCCCC------CCC-Cc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---Y---------AGVEHVGGNMFES------VPE-GD 257 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---~---------~~v~~~~~d~~~~------~~~-~D 257 (360)
...+||++|+|+|..+.. +.......++..|.|..++.-+. . ..|.....+-.++ .+. .|
T Consensus 86 ~~~~vlELGsGtglvG~~-aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGIL-AALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHH-HHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467899999999955544 44445777888887655543321 1 1233333322221 233 59
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+|+.+.++++ ++....++..++..|..++.+++.-..+.
T Consensus 165 lilasDvvy~--~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYE--EESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeec--CCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999986 44556778888889988896666555543
No 304
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=94.78 E-value=0.064 Score=44.75 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=40.5
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
..|+++|...|++|.++||+.+|+ ....++++|..|...|++..
T Consensus 25 ~~Vl~~L~~~g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~ 68 (178)
T PRK06266 25 FEVLKALIKKGEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADY 68 (178)
T ss_pred hHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 348898988789999999999999 88999999999999999995
No 305
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=94.74 E-value=0.07 Score=43.43 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=46.3
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+++++.+.+-.. .+++.|.++||+..++ ++..++++|..|...|+|.... ..+|.|.++...
T Consensus 9 YAlr~L~~LA~~----~~~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r-G~~GGy~La~~p 70 (153)
T PRK11920 9 YAIRMLMYCAAN----DGKLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR-GRNGGVRLGRPA 70 (153)
T ss_pred HHHHHHHHHHhC----CCCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec-CCCCCeeecCCH
Confidence 445555544321 2237899999999999 9999999999999999999864 355678776443
No 306
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.67 E-value=0.037 Score=46.98 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=60.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCCC---CCC-cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESV---PEG-DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~~---~~~-D~i~~~~vl 265 (360)
....|+|.-||.|..+..++..+|.+-.+..| |.-+..|+.+ +||+|++||+++.. .-+ |.+.+...-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiD-PikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDID-PVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEecc-HHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 45789999999999999999998876666666 7666666553 68999999998732 112 333333322
Q ss_pred ccCC-hhHHHHHHHHHHHhCCCCcE
Q 018145 266 HCWD-DDHCLRILKNCYKAVPGNGK 289 (360)
Q Consensus 266 h~~~-~~~~~~~L~~i~~~LkpgG~ 289 (360)
--|+ +.....-+-.+...++|.|.
T Consensus 173 ppwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 PPWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CCCCCcchhhhhhhhhhhhcchhHH
Confidence 2333 33444555666666776643
No 307
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=94.65 E-value=0.058 Score=35.80 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=39.8
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|.+.|...|..|.++||+.+|+ .+.-++|=|..|...|++.+.
T Consensus 4 ~Il~~l~~~~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEKGKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHcCCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 36777888789999999999999 889999999999999999974
No 308
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=94.64 E-value=0.066 Score=43.53 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=47.5
Q ss_pred HhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 52 ~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
.....|+.+..+||+.+++ .+.-+...++-|...|+|.. ..-+.+.+|+.|+....
T Consensus 18 l~~~~~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~---~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 18 LLEEKGFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEY---EPYGGVTLTEKGREKAK 73 (154)
T ss_pred HHhccCcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEE---ecCCCeEEChhhHHHHH
Confidence 3334579999999999999 88899999999999999998 46678999999885543
No 309
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.63 E-value=0.057 Score=51.62 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=63.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeE---EEecchhHHHhCCCCCCcEEEecCCCC---CCCCC-cEEEecccccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKA---VNFDLPHVVQDAPSYAGVEHVGGNMFE---SVPEG-DAILMKWILHC 267 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~v~~~~~d~~~---~~~~~-D~i~~~~vlh~ 267 (360)
....+.|+|...|.|.++.+|.+. | +-+ |-.+-+..+...-.+. +-=+-.|..+ ..|.. |++-..++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRG-LIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRG-LIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcc-cchhccchhhccCCCCcchhheehhhhhhh
Confidence 345689999999999999998754 2 222 1111133332222221 1112234433 34554 99999888887
Q ss_pred CChh-HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 268 WDDD-HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 268 ~~~~-~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.+. +...+|-++-|.|+|||.++|-|.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 6543 466889999999999999999774
No 310
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=94.60 E-value=0.063 Score=46.19 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=50.1
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
+...+.+...+|..+||+.+++ ++..+.+.|+.|...|+|++.....+..+.+|+.|..++.
T Consensus 12 llg~l~~~~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll~ 73 (217)
T PRK14165 12 LLGAVNNTVKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVPRGQLITITEKGLDVLY 73 (217)
T ss_pred HHhccCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHHH
Confidence 3345555446899999999999 8999999999999999999865445667999998886664
No 311
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.58 E-value=0.082 Score=46.99 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCC-eEEEecc-hhHHHhCCCC----------CCcEEEecCCCC---CCCCC--c
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVPEG--D 257 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~---~~~~~--D 257 (360)
..++.++|-||+|.|...+...++ +.+ .+..+|+ ..+++..++. ++|.+..||-+. ..++. |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456789999999999999998887 554 3566666 5566655442 689999998765 34343 9
Q ss_pred EEEeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 258 AILMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 258 ~i~~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+|+.-..=-..|.. --..+...+.++|||||++++...+.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 98863321111111 12356778899999999999977544
No 312
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=94.58 E-value=0.042 Score=40.30 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=47.2
Q ss_pred hhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 49 VFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
|+..|.. |+....+|.+.+ |+ .+..+.+-|+.|...|+|.+...... -.|++|+.|..+..
T Consensus 10 IL~~l~~-g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ-GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT-SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh-CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 4556666 699999999999 88 88899999999999999988643211 25999999987653
No 313
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=94.50 E-value=0.063 Score=36.82 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=43.3
Q ss_pred hhhHhhhC-CCCCHHHHHHHhCcCCCCC--cCcHHHHHHHHhcCcceeecccCCCceeecchhchh
Q 018145 49 VFEIIAKA-GELSAPEIAAQLQAQNVKA--PMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY 111 (360)
Q Consensus 49 lfd~L~~~-g~~t~~~la~~~~~~~~~~--~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~ 111 (360)
|++.|.+. +|++..+|++.+... ..+ ++.+++-|++|...|++.. .....+.+|+.|..
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~Glt~~---~g~~G~~iT~~G~~ 64 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDGLTRK---VGRQGRIITEKGLD 64 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCCCccc---cCCcccccCHHHHh
Confidence 45566554 499999999999773 223 4789999999999997775 34445678877653
No 314
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=94.46 E-value=0.075 Score=40.53 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=49.6
Q ss_pred HHhhChhhHhh----hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 44 AIQLGVFEIIA----KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 44 a~~lglfd~L~----~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
..++.++..|. .+|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|...+
T Consensus 25 ~~q~~vL~~l~~~~~~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 25 LEELLILYYLGKLENNEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred HHHHHHHHHHHhhhccCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 34455566665 4468999999999999 999999999999999999976443333 356777776544
No 315
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=94.45 E-value=0.061 Score=47.29 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=58.5
Q ss_pred HHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcC
Q 018145 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (360)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~ 115 (360)
++....+.+|+=.|.+ ||.|.+||-..+++ .+..+..=++-|...|+|.+ +++.|++|..|..++.+
T Consensus 9 if~SekRk~lLllL~e-gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~----~~~~Y~LS~~G~iiv~k 75 (260)
T COG4742 9 LFLSEKRKDLLLLLKE-GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQ----EGDRYSLSSLGKIIVEK 75 (260)
T ss_pred HHccHHHHHHHHHHHh-CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEe----cCCEEEecchHHHHHHH
Confidence 4556678889999988 79999999999999 78888888999999999996 68999999999977654
No 316
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.26 E-value=0.018 Score=43.44 Aligned_cols=85 Identities=13% Similarity=0.247 Sum_probs=42.7
Q ss_pred cEEEeccccc----cCChhHHHHHHHHHHHhCCCCcEEEEEeeec-CCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHH
Q 018145 257 DAILMKWILH----CWDDDHCLRILKNCYKAVPGNGKVIVMNSIV-PEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 331 (360)
Q Consensus 257 D~i~~~~vlh----~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 331 (360)
|+|+|.+|.- ++.|+....+++++++.|+|||.|++ |+-. .+....... .....-.. ..-...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~~~---~~~~~~n~-----~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAKRL---SEEIRENY-----KSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTTTS----HHHHHHH-----HH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHhhh---hHHHHhHH-----hceEEChHH
Confidence 7887766532 25788999999999999999998886 4322 110000000 00000000 011123456
Q ss_pred HHHHHHH--cCCceeeEEecC
Q 018145 332 YTELAIA--AGFKGINFASCV 350 (360)
Q Consensus 332 ~~~ll~~--aGf~~~~~~~~~ 350 (360)
+.+.|.+ .||+.++....+
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 7787777 699998876554
No 317
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=94.24 E-value=0.087 Score=33.85 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=36.7
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+++.|...++.|..+|++.+++ .+.-+.+.|..|...|+|..
T Consensus 5 il~~l~~~~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 5 ILELLAQQGKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 4555555568999999999999 89999999999999999996
No 318
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=94.24 E-value=0.081 Score=45.09 Aligned_cols=55 Identities=15% Similarity=0.324 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.-+++...++..|++.|+..||+.+.|||+++|+ ++.-+..-+..|+..|++.-+
T Consensus 16 v~kalaS~vRv~Il~lL~~k~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 16 VLKALASKVRVAILQLLHRKGPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence 4567888899999999999899999999999999 888899999999999999864
No 319
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=94.23 E-value=0.059 Score=35.05 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=33.8
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHH
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRL 85 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~ 85 (360)
-.+|.+|.+.|-||. +. ..|.++||+.+|+ .+.-+...||-
T Consensus 6 ~e~L~~A~~~GYfd~-PR--~~tl~elA~~lgi----s~st~~~~LRr 46 (53)
T PF04967_consen 6 REILKAAYELGYFDV-PR--RITLEELAEELGI----SKSTVSEHLRR 46 (53)
T ss_pred HHHHHHHHHcCCCCC-CC--cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 468999999999998 44 5899999999999 66666666654
No 320
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=94.22 E-value=0.061 Score=43.62 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=41.2
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|+++||+..|+ ++.+++++|..|...|+|.... ..+|.|.++...+
T Consensus 25 ~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r-G~~GGy~Lar~~~ 72 (150)
T COG1959 25 PVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR-GKGGGYRLARPPE 72 (150)
T ss_pred cccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec-CCCCCccCCCChH
Confidence 7899999999999 9999999999999999999764 3467888775444
No 321
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=94.09 E-value=0.084 Score=42.33 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=45.6
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
+++++.+.++.+ ..+.+.|.++||+.+|+ ++..+++.|+.|...|+|.... ..++.|.++.
T Consensus 9 YAl~~~i~la~~---~~g~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~-G~~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASL---PEGRMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR-GKNGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcC---CCCCccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec-CCCCCeeecC
Confidence 455555555543 22237899999999999 9999999999999999999754 2445676653
No 322
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=94.02 E-value=0.089 Score=41.50 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
++.|..+||+++++ ++..+.+.|+.|...|+|.... ...+.|.+..
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~-g~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR-GVEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC-CCCCChhhcC
Confidence 48999999999999 9999999999999999998632 1345566643
No 323
>PHA02943 hypothetical protein; Provisional
Probab=93.95 E-value=0.098 Score=41.52 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=43.7
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
..|++.| +.|..|..+||+++|+ +...++..|..|+..|.|.+........|++.+
T Consensus 14 ~eILE~L-k~G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV~~G~~tyw~l~~ 69 (165)
T PHA02943 14 IKTLRLL-ADGCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKVEIGRAAIWCLDE 69 (165)
T ss_pred HHHHHHH-hcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEEeecceEEEEECh
Confidence 3466777 4478999999999999 888999999999999999985422333455554
No 324
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=93.85 E-value=0.51 Score=37.83 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=47.6
Q ss_pred hhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 49 VFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++..|... ++.|..+||+.+++ ++..+.++++-|+..|+|++.....+. ...+|+.|..+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 45666543 36899999999999 889999999999999999986432222 4678888876554
No 325
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.82 E-value=0.14 Score=47.42 Aligned_cols=107 Identities=16% Similarity=0.328 Sum_probs=73.6
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc---hhHHHhC-C------------CCCCcEEEecCCCC
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL---PHVVQDA-P------------SYAGVEHVGGNMFE 251 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a-~------------~~~~v~~~~~d~~~ 251 (360)
+.+.+. ..+.....|+|+|.|.....++.......-+++.+ |.-+... + +...++.+.+++.+
T Consensus 184 i~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 184 IVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 334444 56778999999999999987776654444455544 3322221 1 12458999999987
Q ss_pred C------CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 252 S------VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 252 ~------~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+ .+++++|+.+++..+ ++ ...=+.++..-+++|-+++-.++..+
T Consensus 263 ~~~v~eI~~eatvi~vNN~~Fd--p~-L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 263 PKRVTEIQTEATVIFVNNVAFD--PE-LKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHHHHHhhcceEEEEecccCC--HH-HHHhhHHHHhhCCCcceEeccccccc
Confidence 3 234599999998853 43 33445588899999999999998876
No 326
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=93.72 E-value=0.081 Score=36.14 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|-|+.|||+.+|++ .+..+.+.|++|+..|+|.+.
T Consensus 25 ~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 25 PPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp ---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 77999999999993 478899999999999999974
No 327
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=93.55 E-value=0.21 Score=36.37 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHhhChhhHhhhC-C-CCCHHHHHHHhCcCCCCCcCcHHHHHH----------HHhcCcce-eecccCCCceeecchh
Q 018145 42 QAAIQLGVFEIIAKA-G-ELSAPEIAAQLQAQNVKAPMMLDRMLR----------LLVSHRVL-ECSVSGGERLYALNPV 108 (360)
Q Consensus 42 ~~a~~lglfd~L~~~-g-~~t~~~la~~~~~~~~~~~~~~~~~L~----------~L~~~g~l-~~~~~~~~~~y~~t~~ 108 (360)
+.=++..|+..|.+. + +.++.|||+.+++ ++..+..-|+ .|+.+|+| .+........|++|+.
T Consensus 7 rS~~R~~vl~~L~~~yp~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~ 82 (90)
T PF07381_consen 7 RSKVRKKVLEYLCSIYPEPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEK 82 (90)
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChh
Confidence 355677888888876 3 8999999999999 7777776664 48899999 3332234448999998
Q ss_pred chhhh
Q 018145 109 SKYFV 113 (360)
Q Consensus 109 s~~~~ 113 (360)
+..+.
T Consensus 83 G~~~~ 87 (90)
T PF07381_consen 83 GKRIA 87 (90)
T ss_pred hhhHH
Confidence 87654
No 328
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=93.51 E-value=0.055 Score=48.72 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=67.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCCC------CCcEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP------EGDAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~~------~~D~i~~ 261 (360)
.+.+|||+=|=||.++...+.. ...+++.+|. ..+++.++++ .+++++..|+++... ..|+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999876653 3557899998 7777777642 578999999987321 2299987
Q ss_pred ---ccccccCC-hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 ---KWILHCWD-DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ---~~vlh~~~-~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++.=..+. ..+-.++++.+.+.|+|||.|++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 11111111 23456889999999999999876553
No 329
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=93.48 E-value=0.13 Score=39.75 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=44.8
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.+=..+.|++.++..+|.|+.|+|+..|- +...+.|-|+.|+..|+|...
T Consensus 61 vLsp~nleLl~~Ia~~~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 61 VLSPRNLELLELIAQEEPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred HhChhHHHHHHHHHhcCcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 334456778888998889999999999999 889999999999999999974
No 330
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=93.25 E-value=0.11 Score=39.33 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=41.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|+..|...++.|..+||+.+|+ ++..+.+.++.|...|++.+
T Consensus 4 ~D~~il~~L~~~~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKDARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 45678888888789999999999999 89999999999999999984
No 331
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=93.13 E-value=0.15 Score=35.80 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=38.8
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|=|.|...|..++.+||.+++. +++.++..|..|+++|-|++.
T Consensus 7 lRd~l~~~gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHHHcCcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 3467777789999999999999 999999999999999999974
No 332
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=93.06 E-value=0.12 Score=42.31 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=39.7
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
..|+++|...|.+|-++||+.+|+ +..-++++|..|...|++..
T Consensus 17 v~Vl~aL~~~~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~ 60 (158)
T TIGR00373 17 GLVLFSLGIKGEFTDEEISLELGI----KLNEVRKALYALYDAGLADY 60 (158)
T ss_pred HHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcee
Confidence 457888886679999999999999 89999999999999999975
No 333
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.05 E-value=0.84 Score=42.57 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=70.8
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCC---------------------------------------eEE
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI---------------------------------------KAV 225 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 225 (360)
+..++..- ++.+...++|==||+|.++++.+-..+++ .++
T Consensus 180 AaAil~la-gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLA-GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHc-CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 34444433 37777899999999999999887776532 256
Q ss_pred Eecc-hhHHHhCCCC-------CCcEEEecCCCC-CCC--CCcEEEeccc--cccCChh-HHH----HHHHHHHHhCCCC
Q 018145 226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP--EGDAILMKWI--LHCWDDD-HCL----RILKNCYKAVPGN 287 (360)
Q Consensus 226 ~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~--~~D~i~~~~v--lh~~~~~-~~~----~~L~~i~~~Lkpg 287 (360)
++|+ +.+++.|+.+ +.|+|..+|+.+ ..+ +.|+|+++-- .. +.++ .+. .+.+.+++.++--
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCC
Confidence 8888 8899888754 458999999987 333 3499998421 11 1122 122 3445555666655
Q ss_pred cEEEEEe
Q 018145 288 GKVIVMN 294 (360)
Q Consensus 288 G~lli~e 294 (360)
++.+++.
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6666654
No 334
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.05 E-value=0.092 Score=50.26 Aligned_cols=99 Identities=22% Similarity=0.231 Sum_probs=65.0
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC--C-CC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--S-VP- 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~--~-~~- 254 (360)
....+.+. ..+..+++|+=||.|.++..+++.. .+++++++ +++++.|+++ .+++|..+|.++ . ..
T Consensus 283 ~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHh-hcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34444444 4567899999999999999999654 45677776 8888877653 469999999887 2 21
Q ss_pred -CC-cEEEeccccccCChhHHH-HHHHHHHHhCCCCcEEEEE
Q 018145 255 -EG-DAILMKWILHCWDDDHCL-RILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 255 -~~-D~i~~~~vlh~~~~~~~~-~~L~~i~~~LkpgG~lli~ 293 (360)
.. |+|++- =|...+. .+++.+. .++|...++|.
T Consensus 360 ~~~~d~VvvD-----PPR~G~~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 360 GYKPDVVVVD-----PPRAGADREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred cCCCCEEEEC-----CCCCCCCHHHHHHHH-hcCCCcEEEEe
Confidence 12 888872 1222333 4455544 45666666664
No 335
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.84 E-value=2.6 Score=36.73 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=52.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCC---C--cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE---G--DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~---~--D~i~~~~vl 265 (360)
.+.+||=||-.. ..+.+++-..+..+++++|+ +.+++..++. -.|+.+..|+.+++|+ + |+++.-=.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 458999998554 34445555666778888888 6666654321 2499999999998774 2 99988422
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
++.+.+.-++.+...+||..|....
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy 146 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGY 146 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEE
Confidence 4456778889999999997664433
No 336
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=92.78 E-value=0.19 Score=34.65 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=42.3
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
++.++..|.. ++.|..+||+.+|+ ..+.+++-++.|.+.|+.... . +..|.+.
T Consensus 2 ~~~il~~L~~-~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~--~-~~g~~l~ 54 (69)
T TIGR00122 2 PLRLLALLAD-NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT--V-GKGYRLP 54 (69)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe--c-CCceEec
Confidence 3557778886 58999999999999 889999999999999996543 2 4556554
No 337
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=92.78 E-value=0.42 Score=39.99 Aligned_cols=97 Identities=11% Similarity=0.026 Sum_probs=61.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------CCCcEEEecCCCCC---CC-C--CcEEEec
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFES---VP-E--GDAILMK 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---~~-~--~D~i~~~ 262 (360)
.+.++||+=+|+|.++.+-+.++ ..+++.+|. ..+....++ ..+++++..|...- .+ . .|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 36899999999999999988886 345666665 444444333 25788888888741 11 2 3999984
Q ss_pred ccccc-CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 263 WILHC-WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 263 ~vlh~-~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
=-.+. +-+....-.+-.-..+|+|+|.+++-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 44441 111121222222467899999887643
No 338
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.78 E-value=0.37 Score=41.35 Aligned_cols=94 Identities=23% Similarity=0.335 Sum_probs=66.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC----CC--C---eEEEecchhHHHhCCCCCCcEEEecCCCCC---------CC--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY----PQ--I---KAVNFDLPHVVQDAPSYAGVEHVGGNMFES---------VP-- 254 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~----p~--~---~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~-- 254 (360)
+++..|++|+=...|.++..+.++. ++ - .++.+|+..|.. .++|.-+.+|+.++ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence 4567899999999999998888765 21 1 278888765543 36788899998762 12
Q ss_pred CCcEEEecc-----ccccCCh----hHHHHHHHHHHHhCCCCcEEEE
Q 018145 255 EGDAILMKW-----ILHCWDD----DHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 255 ~~D~i~~~~-----vlh~~~~----~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+|+|++-. -+|+++. +-....|.-...+|||||.++-
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 239999844 4777653 2233556677789999999874
No 339
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=92.71 E-value=0.12 Score=50.46 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=57.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCCCC
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDG 118 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~~~ 118 (360)
.+..++..|...++.|..+||+.+++ ++..+.+.++.|.+.|+|++.. .....|.+|+.|+.++....+
T Consensus 7 ~e~~vL~~L~~~~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~-~~~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 7 NEKKVLKALKELKEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEE-RVEEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEe-eeEEEEEECHHHHHHHHhcCH
Confidence 45667777777678999999999999 8899999999999999999853 234579999999988876654
No 340
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.58 E-value=0.29 Score=43.93 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=55.1
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCe-EEEecc-hhHHHhCCCC-----CCcEEEecCCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE 251 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~ 251 (360)
+.++.++.+. ..+...++|.-=|.|.++..+++.+|... .+++|. |.+++.|++. +|+.+++.+|.+
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 3456777776 66779999999999999999999998754 899998 9999988763 588888887654
No 341
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.56 E-value=0.18 Score=47.40 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=52.2
Q ss_pred CCcEEEecCCCC---CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 240 AGVEHVGGNMFE---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 240 ~~v~~~~~d~~~---~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
++|+++.+++.+ ..|.+ |.+++..++-+++++...+.++.+.+.++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999999877 34444 9999999999999999999999999999999999997766543
No 342
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=92.53 E-value=0.2 Score=37.02 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=39.5
Q ss_pred HHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 61 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 61 ~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
+.+||+.+++ ++..+.+.++.|...|+|.+. .+..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~---~~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE---PYRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc---CCCceEechhHHHHH
Confidence 5689999999 899999999999999999983 445799998887654
No 343
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=92.52 E-value=0.19 Score=32.89 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=32.5
Q ss_pred ChhhHh-hhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCc
Q 018145 48 GVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHR 90 (360)
Q Consensus 48 glfd~L-~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g 90 (360)
.|+..| ...++.|.++||+.+++ +.+-+++-+..|...|
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 456667 44457999999999999 9999999999999999
No 344
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.49 E-value=1.3 Score=41.42 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=69.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC--CeEEEecc-hhHHH----hCCCC--CCcEEEecCCCC---CCCC---CcEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQ----DAPSY--AGVEHVGGNMFE---SVPE---GDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~----~a~~~--~~v~~~~~d~~~---~~~~---~D~i 259 (360)
.+++.+|||.-.+.|.=+..+++..++ ..++.+|. +.-+. +.++. .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567899999999999999999998876 45578886 43333 22221 336677777643 1221 3777
Q ss_pred Ee------cccc-------ccCChhHH-------HHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 260 LM------KWIL-------HCWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 260 ~~------~~vl-------h~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
++ ..++ +.+..+++ .++|..+.+.|||||+|+-.+-...
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 65 3334 33333322 3689999999999999998876553
No 345
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=92.46 E-value=0.21 Score=32.93 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.7
Q ss_pred CC-CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 58 ~~-t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+ |..+||+.+|+ +...+++.|+.|...|++..
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQR 52 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 45 89999999999 88999999999999999986
No 346
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=92.30 E-value=0.089 Score=38.57 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=46.7
Q ss_pred hhHhh--hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcC
Q 018145 50 FEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (360)
Q Consensus 50 fd~L~--~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~ 115 (360)
||.|. ..|+....-|.-.+++ +....+..++.|+..|++..........|.+|+.|..|+..
T Consensus 21 ~dIL~~~~~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle~ 84 (95)
T COG3432 21 FDILKAISEGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLEK 84 (95)
T ss_pred HHHHHHhcCCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHHH
Confidence 34444 3468888889999999 89999999999999996665311112269999999988653
No 347
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=92.29 E-value=0.15 Score=49.04 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHhhChhhHhhhCCC-CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCCCCC
Q 018145 44 AIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGA 119 (360)
Q Consensus 44 a~~lglfd~L~~~g~-~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~~~~ 119 (360)
+.+..|+..|...++ .+.++||+.+|+ ++..+.+.+..|.+.|+++... .....|.+|+.|..++...+++
T Consensus 3 ~~e~~iL~~l~~~~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~l~~G~PE 74 (492)
T PLN02853 3 MAEEALLGALSNNEEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQD-IKRETWVLTEEGKKYAAEGSPE 74 (492)
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCHH
Confidence 456778888887555 899999999999 8889999999999999998764 4667899999999999887764
No 348
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=92.28 E-value=0.12 Score=29.63 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=25.9
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcce
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l 92 (360)
|+|-+|||+.+|+ ..+-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5789999999999 888999999999999875
No 349
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=92.17 E-value=0.43 Score=37.04 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhC-cCCCCCcCcHHHHHHHHhcCcceeeccc---
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVS--- 97 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~-~~~~~~~~~~~~~L~~L~~~g~l~~~~~--- 97 (360)
.++++..++.+.+-|..-+++...+ |+....+|-+.++ + .+..+.+-|+.|+..|+|.+...
T Consensus 10 ~c~~~~~l~~ig~kW~~lIl~~L~~----------g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~ 75 (120)
T COG1733 10 PCPVEEALEVIGGKWTLLILRDLFD----------GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEE 75 (120)
T ss_pred CCCHHHHHHHHcCccHHHHHHHHhc----------CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCC
Confidence 5678888899999998888876543 5889999999988 8 88899999999999999998643
Q ss_pred CCCceeecchhchhhh
Q 018145 98 GGERLYALNPVSKYFV 113 (360)
Q Consensus 98 ~~~~~y~~t~~s~~~~ 113 (360)
...-.|++|+.|..+.
T Consensus 76 PprveY~LT~~G~~L~ 91 (120)
T COG1733 76 PPRVEYRLTEKGRDLL 91 (120)
T ss_pred CceeEEEEhhhHHHHH
Confidence 1134699999988654
No 350
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.07 E-value=0.082 Score=49.39 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=42.3
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNM 249 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~ 249 (360)
..+.+++.++ ..+. +|||+=||.|.++..+++... ++++++. +++++.|+.. .+++|+.++.
T Consensus 185 l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 185 LYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 3445555555 3443 899999999999999998864 5777776 8888877643 5788988765
No 351
>PRK10870 transcriptional repressor MprA; Provisional
Probab=91.98 E-value=2 Score=35.86 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=49.7
Q ss_pred hhChhhHhhh--CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++-++..|.. .++.|..+||+.+++ +...+.++++-|+..|+|++.....+. ...+|+.|..++.
T Consensus 57 q~~iL~~L~~~~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 57 LFMALITLESQENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3445666653 247899999999999 889999999999999999986542222 4678888876654
No 352
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=91.95 E-value=0.48 Score=31.90 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 59 ~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.|..+||+.+++ +...+++.|..|...|+|+.
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 469999999999 88899999999999999986
No 353
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.82 E-value=0.78 Score=42.27 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=66.2
Q ss_pred CCCcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecC---CCCCCCC-CcEEEeccccccC
Q 018145 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN---MFESVPE-GDAILMKWILHCW 268 (360)
Q Consensus 195 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d---~~~~~~~-~D~i~~~~vlh~~ 268 (360)
.+++.+|+=+|.| -|.++..+++... .+++++|. ++-.+.|++...-.++... ..+...+ .|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4567888888876 5688999999876 99999998 7777777776554555543 2222222 488887543 2
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
..+....+.|++||+++++-..
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCC
Confidence 3477888899999999998865
No 354
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=91.80 E-value=0.24 Score=33.24 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=32.8
Q ss_pred hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 55 ~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.++.+..+||+.+|+ .+.-+...++-|...|+|+..
T Consensus 19 ~~~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 19 EGGPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp CTSSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 4469999999999999 888999999999999999974
No 355
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.78 E-value=3.3 Score=34.18 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=74.0
Q ss_pred EEcCCcchHHHHHHhhCC---CCeEEEecc-hhHHHhCCC---------CCCcEEEe-cCCCC--C-C--CCC--cEEEe
Q 018145 203 DVGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDAPS---------YAGVEHVG-GNMFE--S-V--PEG--DAILM 261 (360)
Q Consensus 203 DiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~v~~~~-~d~~~--~-~--~~~--D~i~~ 261 (360)
=||=|.=.++..|++.++ ++.++.+|. ..+.+.... ..++++.. .|+.+ . . ... |.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 378888899999999987 445677775 333333321 13444443 36554 1 2 122 99988
Q ss_pred ccccccC-----------ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHH
Q 018145 262 KWILHCW-----------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 330 (360)
Q Consensus 262 ~~vlh~~-----------~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 330 (360)
++----. ..+-+..+++.+.+.|+++|.+.|.-...+. ++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------y~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------YDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------------------------Cccc
Confidence 6532220 0123457889999999999999985532211 1111
Q ss_pred HHHHHHHHcCCceeeEEecC
Q 018145 331 EYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~ 350 (360)
.+.++.+++||..++..+..
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cHHHHHHhcCCEEEEEecCC
Confidence 24577888999988887765
No 356
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=91.53 E-value=0.34 Score=37.28 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=53.5
Q ss_pred HHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhcC
Q 018145 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVSN 115 (360)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~~ 115 (360)
.+-.+..++..|...++.+..+||+.+++ ++..+.+.++-|+..|+|.+.....+. .+.+|+.|..+...
T Consensus 20 lt~~q~~~L~~l~~~~~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 20 LTPPQYQVLLALYEAGGITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence 34456667777777655555999999999 899999999999999999997542222 57888888766554
No 357
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=91.42 E-value=1.1 Score=42.26 Aligned_cols=109 Identities=22% Similarity=0.354 Sum_probs=59.9
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHH----HHHhhC---CCCeEEEecchh-----HHHhCCCC-------CC--cEE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLS----MITSKY---PQIKAVNFDLPH-----VVQDAPSY-------AG--VEH 244 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~----~l~~~~---p~~~~~~~D~~~-----~~~~a~~~-------~~--v~~ 244 (360)
+.|++.+. -.+..+|+|+|.|.|.-=. .|+.+- |.+++|+++.|. .++.+.++ -+ ++|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 46777777 4567899999999995433 444432 678889888622 22222211 12 344
Q ss_pred Eec--CCCCCC-------CCCcE--EEeccccccCChh------HHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 245 VGG--NMFESV-------PEGDA--ILMKWILHCWDDD------HCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 245 ~~~--d~~~~~-------~~~D~--i~~~~vlh~~~~~------~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
... +-.+++ ..+++ |-+...||++.++ ....+|+.+ +.|+|. .++++|.-.
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~-vvv~~E~ea 246 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPK-VVVLVEQEA 246 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCC-EEEEEeecC
Confidence 442 222211 12333 3356667887632 234466555 578997 445555544
No 358
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=91.40 E-value=0.45 Score=39.99 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=50.6
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ +..-+-++++-|+..|+|.+....++. ...+|+.|..+..
T Consensus 47 q~~iL~~L~~~~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 47 EHHILWIAYHLKGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3456667776679999999999999 878899999999999999986432222 4678888876654
No 359
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.27 E-value=2.9 Score=31.86 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=56.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCC---CC-cEEEeccccccCChh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP---EG-DAILMKWILHCWDDD 271 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~---~~-D~i~~~~vlh~~~~~ 271 (360)
....+|++||-|.=......+++. +..++..|+.+- .++ .+++++..|+++|.- ++ |+|++-. |++
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 345699999988664444444433 266777776222 333 679999999999632 34 9998854 567
Q ss_pred HHHHHHHHHHHhCCCCcEEEEE
Q 018145 272 HCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~ 293 (360)
+....+-.+.++++ ..++|.
T Consensus 82 El~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 82 ELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred HHHHHHHHHHHhhC--CCEEEE
Confidence 77888888888775 444443
No 360
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=91.12 E-value=0.41 Score=42.24 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=48.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+..++-+|..-|+.|+.|||+..|+ +...+..+|+-|...|++.... ..+..|+.-+-..
T Consensus 18 Ea~vY~aLl~~g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~-g~P~~y~av~p~~ 77 (247)
T COG1378 18 EAKVYLALLCLGEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE-GRPKKYRAVPPEE 77 (247)
T ss_pred HHHHHHHHHHhCCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC-CCCceEEeCCHHH
Confidence 4445666766689999999999999 9999999999999999999753 4666787665544
No 361
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=91.09 E-value=0.49 Score=35.02 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
.++|..|||+.+|+ +..-+.+.|..|+..|+|.+. ...+.|+.+
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~--~~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ--GMMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee--cCCceeecC
Confidence 38999999999999 888999999999999999974 233566554
No 362
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=90.65 E-value=0.4 Score=37.91 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=39.5
Q ss_pred hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 55 ~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
..|+.|.+|||-+.|+ ..+.+-..|.++.+-|-|.+..-.+.=+|++.
T Consensus 3 q~Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~q~gkfRy~iP 50 (155)
T PF07789_consen 3 QEGAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVNQNGKFRYCIP 50 (155)
T ss_pred ccCcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEecCCCceEEeCC
Confidence 3589999999999999 89999999999999999998742233366664
No 363
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=90.61 E-value=0.57 Score=35.92 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=42.4
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCC-CCcCcHHHHHHHHhcCcceeecccCCC-ceeecc
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNV-KAPMMLDRMLRLLVSHRVLECSVSGGE-RLYALN 106 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~-~~~~~~~~~L~~L~~~g~l~~~~~~~~-~~y~~t 106 (360)
+.-|++.|... ++.|+++|.+.+.-+.| -+..-+.|.|+.|+..|+|.+....++ .+|..+
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~~~ 66 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELN 66 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEEeC
Confidence 44577777663 48999999999843111 066779999999999999998642222 356543
No 364
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.51 E-value=1.9 Score=40.73 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecC----CCC---CC-CC-C-cEEEec
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN----MFE---SV-PE-G-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d----~~~---~~-~~-~-D~i~~~ 262 (360)
..++.+||.+|||. |..+..+++.....++++++. ++..+.+++...+.++... +.+ .. +. + |+|+-+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678999999988 889999999986545777765 6666666554233333221 111 11 11 3 877653
Q ss_pred cc---------------cccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WI---------------LHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~v---------------lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
-- |+..+ +....+..+.+.|+|+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLET--DRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCccccccccccccccccccc--CchHHHHHHHHHhccCCEEEEEcC
Confidence 21 11112 124578889999999999998854
No 365
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=90.31 E-value=0.34 Score=46.81 Aligned_cols=71 Identities=8% Similarity=0.103 Sum_probs=59.3
Q ss_pred HHhhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCCCCC
Q 018145 44 AIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGA 119 (360)
Q Consensus 44 a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~~~~ 119 (360)
..+..|+..|.+ .+..+.++||+.+|+ ++..+.+.+..|.+.|+++... .....|.+|+.|..++...++.
T Consensus 6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~~~~G~PE 77 (494)
T PTZ00326 6 LEENTILSKLESENEIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEM-KKSNTWTLTEEGEDYLKNGSPE 77 (494)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCHH
Confidence 345567777776 357999999999999 8889999999999999998764 4667899999999999887764
No 366
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=89.80 E-value=0.79 Score=32.29 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
.|+...+||+.+++ ++.-++.-|..|.++|+|+... ...+.|..|..+-.++
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p-~~s~GriPT~~aYr~~ 73 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP-HPSGGRIPTDKAYRAL 73 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC-CCCCCCCcCHHHHHHH
Confidence 49999999999999 8889999999999999998311 1346677777664443
No 367
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.59 E-value=0.82 Score=46.71 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=57.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC-------C-----CCeEEEecc-h---hHHHhCC----------------------
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY-------P-----QIKAVNFDL-P---HVVQDAP---------------------- 237 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~---------------------- 237 (360)
++.-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+.
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345899999999998776666444 3 367777774 2 1111110
Q ss_pred CC-------C--CcEEEecCCCCC---CCC-CcEEEeccccc-cCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 238 SY-------A--GVEHVGGNMFES---VPE-GDAILMKWILH-CWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 238 ~~-------~--~v~~~~~d~~~~---~~~-~D~i~~~~vlh-~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
.. . .+++..||+.+. +.. .|++++-..-- .-|+-.-..+|+.+++.++|||++.-
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 00 1 244666777652 222 38887733221 11222335789999999999998874
No 368
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.43 E-value=1.8 Score=38.39 Aligned_cols=216 Identities=13% Similarity=0.083 Sum_probs=110.1
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCCCCCChHHHhhcc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALP 128 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~~~~~~~~~~~~~ 128 (360)
|+.+|-. .-+.-.|++...+ +.+.+..+++.|...|+|.. +.+...+|..|..|+....-....+.. ..
T Consensus 27 vl~ail~--~~d~wkIvd~s~~----plp~v~~i~~~l~~egiv~~----~~g~v~~TekG~E~~e~~gi~~~~~~~-C~ 95 (354)
T COG1568 27 VLSAILA--TNDFWKIVDYSDL----PLPLVASILEILEDEGIVKI----EEGGVELTEKGEELAEELGIKKKYDYT-CE 95 (354)
T ss_pred HHHHHHc--CcchHhhhhhccC----CchHHHHHHHHHHhcCcEEE----ecCcEeehhhhHHHHHHhCCCcccccc-cc
Confidence 4445554 2388889998888 88899999999999999997 345589999998887654422111110 00
Q ss_pred CC---hhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEc
Q 018145 129 LD---KVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVG 205 (360)
Q Consensus 129 ~~---~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG 205 (360)
+. ...+..+..|-+- +-++....|+....|.+.....-....+..+-.-.+--.+..|+-+|
T Consensus 96 ~CeGrgi~l~~f~dll~k---------------f~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG 160 (354)
T COG1568 96 CCEGRGISLQAFKDLLEK---------------FREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG 160 (354)
T ss_pred CcCCccccchhHHHHHHH---------------HHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEc
Confidence 00 0001111111111 11112222222222222211110000000000000112357899998
Q ss_pred CCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC----C--CCCcEEEecCCCCCCCCC-----cEEEeccccccCChhHH
Q 018145 206 GGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----S--YAGVEHVGGNMFESVPEG-----DAILMKWILHCWDDDHC 273 (360)
Q Consensus 206 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~--~~~v~~~~~d~~~~~~~~-----D~i~~~~vlh~~~~~~~ 273 (360)
-.--.+.+++-..-.-++.++|+ ...+.... + .++++....|..+|+|+. |+++.--. .+-+..
T Consensus 161 -DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp---eTi~al 236 (354)
T COG1568 161 -DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP---ETIKAL 236 (354)
T ss_pred -CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch---hhHHHH
Confidence 33444444333332234555665 44443222 2 267899999999998853 88876211 011234
Q ss_pred HHHHHHHHHhCCCC---cEEEEEe
Q 018145 274 LRILKNCYKAVPGN---GKVIVMN 294 (360)
Q Consensus 274 ~~~L~~i~~~Lkpg---G~lli~e 294 (360)
..+|.+=..+||.- |++-+.-
T Consensus 237 k~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 237 KLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred HHHHhccHHHhcCCCccceEeeee
Confidence 45566666777755 7776643
No 369
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=89.40 E-value=0.45 Score=39.20 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=43.1
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
..+..|+..|.+.|..|..+||+++|+ .+..+.+=++-|...|++..
T Consensus 14 ~~D~~IL~~Lq~d~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 14 RIDRNILNELQKDGRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 367889999999899999999999999 88899999999999999984
No 370
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=89.36 E-value=1 Score=35.00 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=46.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCC---CC-cEEEeccccccCChh
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAILMKWILHCWDDD 271 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~---~~-D~i~~~~vlh~~~~~ 271 (360)
...+|++||-|.=.-....++.. +..+++.|. +. .+. .+++++..|+++|-. ++ |+|++-+ |+.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIR-----PPP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEEeC-----CCh
Confidence 34699999998775544444443 277888887 44 222 679999999999533 24 9999865 455
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 272 HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+....+.++.+.. |.-++|...
T Consensus 82 El~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 82 ELQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp TSHHHHHHHHHHH--T-EEEEE-B
T ss_pred HHhHHHHHHHHHh--CCCEEEECC
Confidence 6666777777765 355555443
No 371
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=89.33 E-value=0.5 Score=38.40 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=42.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|++.|..+|..|..+||+++|+ .+.-+.+=++.|...|++..
T Consensus 10 ~D~~Il~~Lq~d~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 10 LDRGILEALMENARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 57788999999889999999999999 88899999999999999984
No 372
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=89.16 E-value=0.24 Score=37.48 Aligned_cols=42 Identities=19% Similarity=0.422 Sum_probs=32.8
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
|++.|...|.++-++||+.+|+ ++.-++++|..|...|++..
T Consensus 18 Il~~L~~~~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~ 59 (105)
T PF02002_consen 18 ILDALLRKGELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSY 59 (105)
T ss_dssp HHHHHHHH--B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EE
T ss_pred HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEE
Confidence 6778876679999999999999 89999999999999999975
No 373
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=89.14 E-value=0.87 Score=37.76 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh--CcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchh
Q 018145 35 VVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY 111 (360)
Q Consensus 35 ~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~--~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~ 111 (360)
.|...+++..+.+. . +..++++||+++ ++ ...-++.-|+.|...|+++. .+++.|..|..+-.
T Consensus 23 ~W~~~~ir~l~~l~------~-~~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k---~~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 23 SWYHPAIRELLPLM------P-FAPDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKK---DGDGKYVQTDKSLT 87 (171)
T ss_pred hhHHHHHHHHhhcC------C-CCCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEE---CCCCcEEEecceee
Confidence 34445555544432 1 233899999999 99 88899999999999999998 45679998876543
No 374
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=88.97 E-value=0.9 Score=35.05 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=44.6
Q ss_pred HHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..+...|.+...+.|.+|..+++..+|+ +-.-+++.++.|++.|-|..+
T Consensus 10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~ 59 (127)
T PF06163_consen 10 REELKARIVELVREHGRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH 59 (127)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence 45567778888888899999999999999 888999999999999999974
No 375
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.51 E-value=0.67 Score=41.26 Aligned_cols=75 Identities=12% Similarity=0.202 Sum_probs=49.2
Q ss_pred HHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcE
Q 018145 211 TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGK 289 (360)
Q Consensus 211 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~ 289 (360)
++.+|.+..++.+++++|. +..++.+.+.+-+.-...+ .+.+.+.|+|+++ .|......+|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCCCcE
Confidence 4677888889999999998 7777777544333333332 2233445999886 4666788889998888888864
Q ss_pred EE
Q 018145 290 VI 291 (360)
Q Consensus 290 ll 291 (360)
+.
T Consensus 75 v~ 76 (258)
T PF02153_consen 75 VT 76 (258)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 376
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=88.08 E-value=0.71 Score=37.36 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=42.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+..|...|.+.++.|..+||+++|+ ++..+.+-++-|...|++...
T Consensus 9 ~D~~IL~~L~~d~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 9 IDRRILRLLQEDARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence 56678889999889999999999999 888999999999999999963
No 377
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.05 E-value=3.5 Score=38.54 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=65.1
Q ss_pred cceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCC--------C-CCCCC-cEEEecccc
Q 018145 198 VERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMF--------E-SVPEG-DAILMKWIL 265 (360)
Q Consensus 198 ~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~--------~-~~~~~-D~i~~~~vl 265 (360)
..+|+-+|||. |.++..+++.+...++++.|. +.-++.|++....+.+.-.-. . ....+ |+++=+.-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 34999999995 666688888888889999998 888888876422222221111 1 11223 88875443
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
....+..+.++++|||++.++-.....
T Consensus 248 -------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 134788999999999999998876544
No 378
>PRK06474 hypothetical protein; Provisional
Probab=88.01 E-value=0.79 Score=38.30 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=51.5
Q ss_pred HHHHHHHhhChhhHhhhCC-CCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccC-----CCceeecchhchh
Q 018145 39 MATQAAIQLGVFEIIAKAG-ELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKY 111 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g-~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~~s~~ 111 (360)
.+|.--.++.|++.|...+ +.|+.+|++.+ ++ +..-+.|.|+.|+..|+|...... ....|++++.+-.
T Consensus 6 ~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~~ 81 (178)
T PRK06474 6 EILMHPVRMKICQVLMRNKEGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDAK 81 (178)
T ss_pred HhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccceee
Confidence 4555567888889887754 49999999999 57 777899999999999999975321 1135777766543
No 379
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=87.49 E-value=0.67 Score=44.59 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=42.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 251 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~ 251 (360)
++....++|+=||||.++.++++.. .+++++.+ |+.++.|+.. .+.+|+.|-.++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 6677999999999999999888875 45666666 8888888654 468899994444
No 380
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=86.94 E-value=0.7 Score=36.77 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=47.2
Q ss_pred eEEEecc-hhHHHhCCCC-------CCcEEEecCCCC---CCCC-C-cEEEeccccccCCh-------hHHHHHHHHHHH
Q 018145 223 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPE-G-DAILMKWILHCWDD-------DHCLRILKNCYK 282 (360)
Q Consensus 223 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~---~~~~-~-D~i~~~~vlh~~~~-------~~~~~~L~~i~~ 282 (360)
++.++|+ +++++.++++ ++|+++..+=.+ .+++ . |+++++.-----+| +.-...|+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 4678898 7788776653 578888876544 3455 3 88877532211112 334578999999
Q ss_pred hCCCCcEEEEEeeec
Q 018145 283 AVPGNGKVIVMNSIV 297 (360)
Q Consensus 283 ~LkpgG~lli~e~~~ 297 (360)
.|+|||.+.|+-+.-
T Consensus 81 lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 81 LLKPGGIITIVVYPG 95 (140)
T ss_dssp HEEEEEEEEEEE--S
T ss_pred hhccCCEEEEEEeCC
Confidence 999999999987643
No 381
>PRK05638 threonine synthase; Validated
Probab=86.71 E-value=1.1 Score=43.35 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=49.1
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhC--cCCCCCcCcHHHHHHHHhcCcceeecc-cCCCceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQ--AQNVKAPMMLDRMLRLLVSHRVLECSV-SGGERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~--~~~~~~~~~~~~~L~~L~~~g~l~~~~-~~~~~~y~~t~~s~~~~~ 114 (360)
++-|+..|.+ ++.+.-+|++.++ + .+..+.+.|+.|...|+|+... ......|++|+.+..++.
T Consensus 373 r~~IL~~L~~-~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~l~ 439 (442)
T PRK05638 373 KLEILKILSE-REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRLLE 439 (442)
T ss_pred HHHHHHHHhh-CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHHHH
Confidence 4446777776 5899999999998 7 7889999999999999998531 112336999988876543
No 382
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=86.44 E-value=1.2 Score=41.19 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=40.0
Q ss_pred CccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC----C----CCeEEEecc-hhHHH
Q 018145 166 NPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----P----QIKAVNFDL-PHVVQ 234 (360)
Q Consensus 166 ~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----p----~~~~~~~D~-~~~~~ 234 (360)
-|+..+.|-+......- +....+. .+.+..+++||.|+|.++..+++.. | .+++..++. |...+
T Consensus 51 Apels~lFGella~~~~----~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 51 APELSQLFGELLAEQFL----QLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred chhHHHHHHHHHHHHHH----HHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 35566666654433222 1222232 4456899999999999999888764 4 467777776 54443
No 383
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=86.42 E-value=0.98 Score=27.77 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=25.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHH
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLR 84 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~ 84 (360)
++..|+..|.+.|..|..+||+.+|+ .+..+.+=++
T Consensus 4 ~D~~Il~~Lq~d~r~s~~~la~~lgl----S~~~v~~Ri~ 39 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRSYAELAEELGL----SESTVRRRIR 39 (42)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHTS-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHCc----CHHHHHHHHH
Confidence 45678888988889999999999999 6655544333
No 384
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=86.39 E-value=4.7 Score=35.08 Aligned_cols=62 Identities=27% Similarity=0.309 Sum_probs=48.8
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 27 HAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 27 ~~~~~~~~~~~~~~l~~a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+.+++-+-.+.+=+.+.. .||+.|.. .|-++..+||+++|+ ....+++=++.|++.|+++.
T Consensus 168 a~Vq~Ai~tLSySEleAv~--~IL~~L~~~egrlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~ 230 (251)
T TIGR02787 168 AAVQMAINTLSYSELEAVE--HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIES 230 (251)
T ss_pred HHHHHHHHhccHhHHHHHH--HHHHHhccccccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 3555555555555444443 47888888 479999999999999 88899999999999999996
No 385
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=86.23 E-value=3.8 Score=36.90 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=56.0
Q ss_pred ceEEEEcCC--cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCC-CCCCCCCcEEEeccccccCChhHHH
Q 018145 199 ERLVDVGGG--FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNM-FESVPEGDAILMKWILHCWDDDHCL 274 (360)
Q Consensus 199 ~~vLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~-~~~~~~~D~i~~~~vlh~~~~~~~~ 274 (360)
.+|+=+|.| .|.++..+.+..+...+++.|. ...++.+...+-+.-...+. ......+|+|+++ .|.....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva-----vPi~~~~ 78 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA-----VPIEATE 78 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe-----ccHHHHH
Confidence 456666666 4577777777778888899987 45555554332222222222 1233345999886 4666778
Q ss_pred HHHHHHHHhCCCCcEE
Q 018145 275 RILKNCYKAVPGNGKV 290 (360)
Q Consensus 275 ~~L~~i~~~LkpgG~l 290 (360)
.+++++...|+||..+
T Consensus 79 ~~l~~l~~~l~~g~iv 94 (279)
T COG0287 79 EVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHhcccCCCCCEE
Confidence 8999999999998643
No 386
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=86.16 E-value=1.1 Score=42.88 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
.|.|.++|++++++ +++.++++|+.|...|++.+ .+++.|.+.
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~---~~~g~~~l~ 351 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRR---GERGQWVLA 351 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEe---cCCCceEec
Confidence 48999999999999 99999999999999999996 344567555
No 387
>PRK10742 putative methyltransferase; Provisional
Probab=86.03 E-value=1.3 Score=38.81 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=33.2
Q ss_pred HHHhhcccCCCcc--eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHH
Q 018145 187 RILEHYEGFQNVE--RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVV 233 (360)
Q Consensus 187 ~i~~~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~ 233 (360)
.+++++. ++++. +|||.=+|.|..+..++.. +++++.++. |.+.
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~va 123 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVA 123 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHH
Confidence 4555554 56555 9999999999999999988 556888886 4433
No 388
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=85.72 E-value=1 Score=39.91 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=41.1
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..|.+.|.+.|..+..+||+.+|+ .+.-++|-|+.|.+.|++.+.
T Consensus 7 ~~~Il~~l~~~~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 7 HQILLELLAQLGFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3457888888889999999999999 888999999999999999873
No 389
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=85.62 E-value=0.83 Score=30.81 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=34.8
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
|++.|-..|+.|..+|.+.+++ +++.++.-|-.|..++++..
T Consensus 18 V~~~Ll~~G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y 59 (62)
T PF08221_consen 18 VGEVLLSRGRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQY 59 (62)
T ss_dssp HHHHHHHC-SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeee
Confidence 5666666689999999999999 89999999999999999985
No 390
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.54 E-value=4 Score=37.32 Aligned_cols=90 Identities=13% Similarity=0.007 Sum_probs=49.9
Q ss_pred cceEEEEcCCcc--hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHH
Q 018145 198 VERLVDVGGGFG--VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCL 274 (360)
Q Consensus 198 ~~~vLDiG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~ 274 (360)
..+|.=||+|.- .++..+.+.....+++++|. ++..+.+++..-......+..+.....|+|+++- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 357888988752 34444444433346778887 5555555432211111112111233449988764 444456
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 018145 275 RILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 275 ~~L~~i~~~LkpgG~lli 292 (360)
.+++.+...++||..++.
T Consensus 81 ~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHhhCCCCCEEEe
Confidence 778888888888875543
No 391
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=85.08 E-value=0.83 Score=31.92 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=43.4
Q ss_pred HHHHHHHhhChhh-----HhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 39 MATQAAIQLGVFE-----IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 39 ~~l~~a~~lglfd-----~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
.++..+.+.|..+ .+.- +.|-++||+.+|+ ...-+.+.|+.|...|++.. ..+.+...
T Consensus 6 ~Ll~l~~~~~~~~~~~~~~~~~--~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~----~~~~i~I~ 68 (76)
T PF13545_consen 6 FLLELAERFGRRQDGDGIRIPL--PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEV----KRGKIIIL 68 (76)
T ss_dssp HHHHHHHHHEEEEETTEEEEEE--ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE----ETTEEEES
T ss_pred HHHHHHHHHCCCCCCCCceEEe--cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE----cCCEEEEC
Confidence 4455556666541 2222 8999999999999 88899999999999999996 34555544
No 392
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=85.01 E-value=1.4 Score=39.40 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=55.1
Q ss_pred hhHHHhCCCC-CCcEEEecCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 230 PHVVQDAPSY-AGVEHVGGNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 230 ~~~~~~a~~~-~~v~~~~~d~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+.+.|.+++. .||.++++|+.+- .|.+ |-|++..+=.++++.....++.++.+.+.||.++++-.....
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae~ 370 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAEV 370 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecccce
Confidence 4555555443 6899999999772 2434 999999999989999999999999999999999999665443
No 393
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=84.20 E-value=1.3 Score=40.01 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=39.2
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEec----CCCCCCC---CC-cEEE
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGG----NMFESVP---EG-DAIL 260 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~----d~~~~~~---~~-D~i~ 260 (360)
..++||||+|....=--|..+..+.++++.|+ +..++.|++. .+|+++.. +++..+. +. |+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 57999999998855333333334889988888 8788877642 57887754 3444221 22 9999
Q ss_pred eccccccC
Q 018145 261 MKWILHCW 268 (360)
Q Consensus 261 ~~~vlh~~ 268 (360)
|+=-+|.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 98888863
No 394
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.13 E-value=8.7 Score=37.77 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=61.4
Q ss_pred CCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC--------------C-------
Q 018145 196 QNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE--------------S------- 252 (360)
Q Consensus 196 ~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~--------------~------- 252 (360)
.++.+|+-+|||. |..+...++... .+++++|. ++..+.+++. +.++...|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 3578999999995 556666777765 47999998 7777877664 23332221111 1
Q ss_pred -----CCCCcEEEeccccccCChhHHHHH-HHHHHHhCCCCcEEEEEee
Q 018145 253 -----VPEGDAILMKWILHCWDDDHCLRI-LKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 253 -----~~~~D~i~~~~vlh~~~~~~~~~~-L~~i~~~LkpgG~lli~e~ 295 (360)
....|+++-.-.... .....+ .+...+.+||||+++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 012399987654322 112344 5999999999999887653
No 395
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=84.11 E-value=1.6 Score=34.07 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCCce
Q 018145 274 LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNL 353 (360)
Q Consensus 274 ~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 353 (360)
..+++++++.++|||.+.-.. ....+++.|.++||.+.+....+..-
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys---------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYS---------------------------------SAGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES-----------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHHhCCCcEEEEee---------------------------------chHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 468999999999998766311 11236789999999988777666555
Q ss_pred eEEEEeC
Q 018145 354 YIMEFFK 360 (360)
Q Consensus 354 ~vi~~~k 360 (360)
.++.+.|
T Consensus 117 ~~~~a~~ 123 (124)
T PF05430_consen 117 EMLRAVK 123 (124)
T ss_dssp EEEEEEC
T ss_pred hheEEEc
Confidence 5655543
No 396
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=83.94 E-value=7.9 Score=28.61 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=49.5
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCcc------CCHHHHHHHHH
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE------RTKKEYTELAI 337 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~t~~e~~~ll~ 337 (360)
+|=|++.++..++|.++...-+ |.+++. +.... + ....+.. ..-.++++.. ..++++.+.++
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~--~~~ifT-fAP~T----~----~L~~m~~-iG~lFP~~dRsp~i~~~~e~~l~~~l~ 71 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR--GSLIFT-FAPRT----P----LLALMHA-IGKLFPRPDRSPRIYPHREEDLRRALA 71 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc--CcEEEE-ECCCC----H----HHHHHHH-HhccCCCCCCCCcEEEeCHHHHHHHHH
Confidence 4556899999999999887654 555542 22111 1 1111111 1111222221 26789999999
Q ss_pred HcCCceeeEEecCCcee---EEEEe
Q 018145 338 AAGFKGINFASCVCNLY---IMEFF 359 (360)
Q Consensus 338 ~aGf~~~~~~~~~~~~~---vi~~~ 359 (360)
++||++.+......+.+ .+|++
T Consensus 72 ~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 72 AAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred hCCCeeeecccccCcChHHHHhhcc
Confidence 99999998877765433 44544
No 397
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=83.93 E-value=1 Score=31.65 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=22.1
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHH
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL 86 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L 86 (360)
++..|+++.|+|.++||.++|+ +.+-++..|..+
T Consensus 29 LLr~LA~G~PVt~~~LA~a~g~----~~e~v~~~L~~~ 62 (77)
T PF12324_consen 29 LLRLLAKGQPVTVEQLAAALGW----PVEEVRAALAAM 62 (77)
T ss_dssp HHHHHTTTS-B-HHHHHHHHT------HHHHHHHHHH-
T ss_pred HHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHhC
Confidence 7788998669999999999999 555555444443
No 398
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=83.86 E-value=1.7 Score=36.87 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=36.1
Q ss_pred hhChhhHhhh----CC-CCCHHHHHHHhCcCCCCC-cCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAK----AG-ELSAPEIAAQLQAQNVKA-PMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~----~g-~~t~~~la~~~~~~~~~~-~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|++.|.+ .| +.|..|||+.+|+ + ..-+.+.|+.|...|+|..
T Consensus 8 q~~iL~~l~~~~~~~~~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~ 58 (199)
T TIGR00498 8 QQEVLDLIRAHIESTGYPPSIREIARAVGL----RSPSAAEEHLKALERKGYIER 58 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEec
Confidence 4445555542 23 6899999999999 7 7889999999999999996
No 399
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.64 E-value=10 Score=31.89 Aligned_cols=103 Identities=15% Similarity=0.209 Sum_probs=70.1
Q ss_pred CcceEEEEcCCcchHHHHHHh----hCCCCeEEEecc--hhHHHhCCCCCCcEEEecCCCCC-CC-------CC--cEEE
Q 018145 197 NVERLVDVGGGFGVTLSMITS----KYPQIKAVNFDL--PHVVQDAPSYAGVEHVGGNMFES-VP-------EG--DAIL 260 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~----~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~d~~~~-~~-------~~--D~i~ 260 (360)
++..|+++|.-.|.-+..++. .....+++++|+ ...-..|++.++|.|+.++-.++ +. .. -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 468999999888866554443 333456777765 22223344468999999987763 11 11 5556
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP 301 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~ 301 (360)
+-..-|+. +.+.+.|+-....|.-|-++++-|....+.+
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 66666653 4677888889999999999999998876654
No 400
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=83.42 E-value=2.3 Score=29.41 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=37.3
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|...|+.. ..|.++|-+.+|+ +..-+-..|.-|+..|++.+.
T Consensus 9 ~IL~~ls~~-c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 9 KILIILSKR-CCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHHhc-cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 355666764 8999999999999 888899999999999999974
No 401
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=83.40 E-value=2.3 Score=35.23 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=33.2
Q ss_pred cEEEeccccccCCh----------hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 DAILMKWILHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 D~i~~~~vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+|+++++||+++- +...+++.+++.+|+|+..++.....+
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999999864 456788888889998987777766544
No 402
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=83.38 E-value=1.6 Score=29.51 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=29.8
Q ss_pred CC-CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~-t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+ |..+||+.+|+ ...-+++-|+.|.+.|+|+..
T Consensus 23 ~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 23 RLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp BE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred EeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 56 99999999999 889999999999999999974
No 403
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=83.33 E-value=1.3 Score=39.29 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=41.7
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+.-|.+.|.+.|..++.|||+.+++ .+.=++|-|..|...|++.+.
T Consensus 6 R~~~Il~~l~~~~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~ 52 (252)
T PRK10906 6 RHDAIIELVKQQGYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRH 52 (252)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 44567788888889999999999999 888999999999999999974
No 404
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=82.98 E-value=6.2 Score=34.40 Aligned_cols=97 Identities=11% Similarity=0.139 Sum_probs=65.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-----hhHHHhCCCCCCcEEEecCCCCCCC------CCcEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFESVP------EGDAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~~~~------~~D~i~~~ 262 (360)
++++.+||-+|.++|.....+..-. |.--+..++. .+.+..|+++.+|-=+.-|+..|.. --|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 5788999999999999887776654 4433344433 3677778777777666667766432 1277765
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+-+ +++..-+.-++.--||+||.++|.-.
T Consensus 233 Dvaq---pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 233 DVAQ---PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred cCCC---chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 2222 33455566678889999999998654
No 405
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=82.98 E-value=1.5 Score=37.33 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.|++|+|+++|+ ..--.+|.|.+|++.|++...
T Consensus 173 ~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 173 ELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred ccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 8999999999999 888899999999999999854
No 406
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.86 E-value=11 Score=34.45 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCCcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCC-C-cEEEecC-----CCC----CCCC--CcEE
Q 018145 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-G-VEHVGGN-----MFE----SVPE--GDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~-v~~~~~d-----~~~----~~~~--~D~i 259 (360)
.+.+.+||-+|+| .|..+...++.+...++++.|+ +.-++.|++.. . +...... +.+ -... .|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 5678999999999 5788888899998899999998 88888888741 1 1111111 101 0111 1888
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+-+..++ ..++.+..++++||.+++.....+
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEccCch--------HHHHHHHHHhccCCEEEEeccCCC
Confidence 7776554 457788899999999888875443
No 407
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=82.51 E-value=1.7 Score=30.54 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=39.6
Q ss_pred HhhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+..+++.+.... +.+..+|+..+|. |++.+-..++.|...|+|...
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 3455667777643 8899999999999 999999999999999999963
No 408
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=82.26 E-value=2.6 Score=36.43 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 56 ~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
.|.....|||+++|+ .+..+...++-|+..|++.. ...++|..|..|..++.
T Consensus 23 qp~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~---~gR~~Y~iTkkG~e~l~ 74 (260)
T COG1497 23 QPRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEK---EGRGEYEITKKGAEWLL 74 (260)
T ss_pred CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceee---cCCeeEEEehhHHHHHH
Confidence 368899999999999 88899999999999999997 35569999999976654
No 409
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=81.69 E-value=1.9 Score=38.03 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=52.8
Q ss_pred CcceEEEEcCCcchHHHH---HHhhC--CCCeEEEecc----hhHHH---------------------------hCCCC-
Q 018145 197 NVERLVDVGGGFGVTLSM---ITSKY--PQIKAVNFDL----PHVVQ---------------------------DAPSY- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~---l~~~~--p~~~~~~~D~----~~~~~---------------------------~a~~~- 239 (360)
-+..|+|+||=.|..+.. +++.+ ++-++.++|. |+.-. ...+.
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 457999999998876644 34443 4556777774 22211 01111
Q ss_pred ---CCcEEEecCCCCCCCCC---cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 240 ---AGVEHVGGNMFESVPEG---DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 240 ---~~v~~~~~d~~~~~~~~---D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++|.++.|.|.+.+|.. .+.++.-=. ++= +.....|..++..|.|||.+++-|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-DlY-esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-DLY-ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE----SH-HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEec-cch-HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 46899999987655532 222221111 111 2456789999999999999998664
No 410
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=81.66 E-value=2.1 Score=39.45 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=43.4
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcc-eeecccCCCceeecchh
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNPV 108 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~-l~~~~~~~~~~y~~t~~ 108 (360)
...|.+.|....+.+.++||+++|+ ....+.+.++.|...|+ +.. ..+..|.+.+.
T Consensus 6 ~~~il~~L~~~~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i~~---~~~~Gy~L~~~ 62 (319)
T PRK11886 6 MLQLLSLLADGDFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDIFS---VKGKGYRLAEP 62 (319)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceEE---ecCCeEEecCc
Confidence 3456777776558999999999999 89999999999999999 543 23346776443
No 411
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=81.63 E-value=2.2 Score=38.52 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=67.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCC----CC--CCcEEEecCCCCC----CCC-CcEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAP----SY--AGVEHVGGNMFES----VPE-GDAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~----~~--~~v~~~~~d~~~~----~~~-~D~i~~ 261 (360)
..++.+|||+-++.|.=+..+++..+ ...++..|. +.-+...+ +. ..+.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678999999999999999999987 467888887 44333322 21 4566666665442 122 277765
Q ss_pred ------ccccccCCh-------hH-------HHHHHHHHHHhC----CCCcEEEEEeeec
Q 018145 262 ------KWILHCWDD-------DH-------CLRILKNCYKAV----PGNGKVIVMNSIV 297 (360)
Q Consensus 262 ------~~vlh~~~~-------~~-------~~~~L~~i~~~L----kpgG~lli~e~~~ 297 (360)
..++..-++ ++ -.++|+++.+.+ ||||+++-..-..
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 222332222 11 236899999999 9999999877544
No 412
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=81.61 E-value=6.8 Score=31.41 Aligned_cols=118 Identities=14% Similarity=0.242 Sum_probs=56.2
Q ss_pred HHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-----hhHHHhCCCCCCcEEE
Q 018145 171 ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPSYAGVEHV 245 (360)
Q Consensus 171 ~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~ 245 (360)
..|-+.|..... ..++.+..+.+. ..-|||+|=|+|..=-.+.+.+|+-+++++|. |+.+. +.=.++
T Consensus 5 Dsfi~RmtaQR~-~L~~a~~~v~~~--~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P-----~~~~~i 76 (160)
T PF12692_consen 5 DSFIRRMTAQRD-CLNWAAAQVAGL--PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTP-----PEEDLI 76 (160)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG--------GGGEE
T ss_pred HHHHHHHHHHHH-HHHHHHHHhcCC--CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCC-----chHhee
Confidence 344444443322 223444555433 36799999999999999999999999999995 22211 223577
Q ss_pred ecCCCCCCCC----C-cEEEe--ccccccCChhH---HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 246 GGNMFESVPE----G-DAILM--KWILHCWDDDH---CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 246 ~~d~~~~~~~----~-D~i~~--~~vlh~~~~~~---~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.||+.+..+. + .+.+. -.-.|+ .+++ ...+=.-+..+|.|||.++...+..
T Consensus 77 lGdi~~tl~~~~~~g~~a~laHaD~G~g~-~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 77 LGDIRETLPALARFGAGAALAHADIGTGD-KEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp ES-HHHHHHHHHHH-S-EEEEEE----S--HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred eccHHHHhHHHHhcCCceEEEEeecCCCC-cchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 7776652221 1 22222 122222 1111 1122234556788999888766554
No 413
>PF13730 HTH_36: Helix-turn-helix domain
Probab=81.45 E-value=1.4 Score=28.60 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=27.3
Q ss_pred CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcce
Q 018145 60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (360)
Q Consensus 60 t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l 92 (360)
|.+.||+.+|+ ..+-+.+.++.|+..|+|
T Consensus 27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 89999999999 888999999999999986
No 414
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=81.38 E-value=1.6 Score=35.18 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=36.7
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCccee
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~ 93 (360)
-|+++|...|.+|-++||+.+|+ +..-++++|..|...+++.
T Consensus 5 ~v~d~L~~~~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~~ 46 (147)
T smart00531 5 LVLDALMRNGCVTEEDLAELLGI----KQKQLRKILYLLYDEKLIK 46 (147)
T ss_pred eehHHHHhcCCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcch
Confidence 47888877789999999999999 8999999999999955554
No 415
>PTZ00357 methyltransferase; Provisional
Probab=81.29 E-value=5.2 Score=40.23 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=75.5
Q ss_pred ChhhhhccCccHHHHHHHHHhhcchhhHH------------HH------HhhcccC---CCcceEEEEcCCcchHHHHHH
Q 018145 158 HIFEYASGNPRFNETYHEAMFNHSTIAME------------RI------LEHYEGF---QNVERLVDVGGGFGVTLSMIT 216 (360)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~------------~i------~~~~~~~---~~~~~vLDiG~G~G~~~~~l~ 216 (360)
..|+.+++++-....|.+++......... ++ +++.+.. .....|+-+|+|-|-+....+
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraL 719 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECL 719 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHH
Confidence 45888889998888888877554321110 00 1111211 122569999999998887766
Q ss_pred hhCC----CCeEEEecc-hhHHH---hCC-CC-----------CCcEEEecCCCC-CCC-------------CCcEEEec
Q 018145 217 SKYP----QIKAVNFDL-PHVVQ---DAP-SY-----------AGVEHVGGNMFE-SVP-------------EGDAILMK 262 (360)
Q Consensus 217 ~~~p----~~~~~~~D~-~~~~~---~a~-~~-----------~~v~~~~~d~~~-~~~-------------~~D~i~~~ 262 (360)
+... .++++.++. |..+. ..+ +. ++|+++..|+.+ ..+ ..|+|++-
T Consensus 720 rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 720 HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh
Confidence 6543 456677775 34221 111 11 248999999987 322 24888762
Q ss_pred cccccCC-hhHHHHHHHHHHHhCCC----CcE
Q 018145 263 WILHCWD-DDHCLRILKNCYKAVPG----NGK 289 (360)
Q Consensus 263 ~vlh~~~-~~~~~~~L~~i~~~Lkp----gG~ 289 (360)
. |--|. ++-..+.|..+.+.||+ +|.
T Consensus 800 L-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 800 L-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred h-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1 11122 22334567777777776 664
No 416
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=81.08 E-value=1.6 Score=33.53 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++|++|||+.+.+ .++.++.+|+.|...|.|+..
T Consensus 19 ~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~ 52 (115)
T PF12793_consen 19 EVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQ 52 (115)
T ss_pred ceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeee
Confidence 7899999999999 999999999999999999964
No 417
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=81.07 E-value=2 Score=35.56 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=39.5
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.-|++.|.+.|-+|=++||+.+|+ ...-++++|.+|...|++...
T Consensus 21 ~~v~~~l~~kge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 21 VLVVDALLEKGELTDEELAELLGI----KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred hHHHHHHHhcCCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEEE
Confidence 446788887567999999999999 888999999999999999953
No 418
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=81.06 E-value=5 Score=33.05 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=38.4
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
-.|..+||+.+|+ ..+-+.|.+..|...++|.+ ...+.|.++|.
T Consensus 75 ~~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k---~~~G~Y~iNP~ 118 (165)
T PF05732_consen 75 VATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKK---IRNGAYMINPN 118 (165)
T ss_pred EeeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEE---ccCCeEEECcH
Confidence 4689999999999 88889999999999999997 45578888765
No 419
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=80.95 E-value=0.93 Score=31.00 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=43.3
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
.+-.|++.|...|+.++-.||...|++. +..-+.+.|..|...|.|.... ..+-.|+++.
T Consensus 5 ~ee~Il~~L~~~g~~~a~~ia~~~~L~~--~kk~VN~~LY~L~k~g~v~k~~-~~PP~W~l~~ 64 (66)
T PF02295_consen 5 LEEKILDFLKELGGSTATAIAKALGLSV--PKKEVNRVLYRLEKQGKVCKEG-GTPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHTSSEEEHHHHHHHHTS---HHHHHHHHHHHHHTTSEEEEC-SSSTEEEE-H
T ss_pred HHHHHHHHHHhcCCccHHHHHHHhCcch--hHHHHHHHHHHHHHCCCEeeCC-CCCCceEecc
Confidence 4566888888877777777777777611 3678999999999999998753 3566777664
No 420
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=80.90 E-value=1.7 Score=38.72 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=42.0
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+..|.+.|.+.|.+++.|||+.+++ .+.-++|=|..|...|+|.+.
T Consensus 6 R~~~Il~~L~~~~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r~ 52 (256)
T PRK10434 6 RQAAILEYLQKQGKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIRT 52 (256)
T ss_pred HHHHHHHHHHHcCCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 45567888988889999999999999 888999999999999999974
No 421
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=80.14 E-value=2.9 Score=36.74 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=40.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
...|.+.|.+.+..+.++||+.+|+ .+.-++|-|..|...|.+.+
T Consensus 6 ~~~Il~~l~~~~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r 50 (240)
T PRK10411 6 QQAIVDLLLNHTSLTTEALAEQLNV----SKETIRRDLNELQTQGKILR 50 (240)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 3447778877789999999999999 88999999999999999987
No 422
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=80.11 E-value=1.9 Score=37.15 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHH
Q 018145 36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRL 85 (360)
Q Consensus 36 ~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~ 85 (360)
..-.+|+.|.+.|-||. ++ ..|+.+||+.+|+ .+.-+...||.
T Consensus 159 rQ~~vL~~A~~~GYFd~-PR--~~~l~dLA~~lGI----Skst~~ehLRr 201 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-PR--RVSLKDLAKELGI----SKSTLSEHLRR 201 (215)
T ss_pred HHHHHHHHHHHcCCCCC-Cc--cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 45678999999999999 55 6999999999999 55555555553
No 423
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=79.95 E-value=8.2 Score=34.69 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=48.3
Q ss_pred eEEEEcCCc--chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHH
Q 018145 200 RLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRI 276 (360)
Q Consensus 200 ~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~ 276 (360)
+|.=||+|. |.++..+.+. +.+++++|. ++..+.+.....+.....+. +...+.|+|+++ .|+....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHHH
Confidence 466677764 3455555544 456777886 56666554332222211111 112234999886 456677788
Q ss_pred HHHHHHhCCCCcEE
Q 018145 277 LKNCYKAVPGNGKV 290 (360)
Q Consensus 277 L~~i~~~LkpgG~l 290 (360)
++++...++|+..+
T Consensus 74 ~~~l~~~l~~~~ii 87 (279)
T PRK07417 74 SEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHhCCCCcEE
Confidence 99999988887433
No 424
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=79.56 E-value=2.6 Score=37.41 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=40.1
Q ss_pred hhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..+.+.|.+.| -.+-+||.+++|+ +..-+.|.|+-|+.+|++++.
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~ 243 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKE 243 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEE
Confidence 455677777755 6999999999999 888999999999999999986
No 425
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=79.26 E-value=1.5 Score=27.75 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=23.7
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV 91 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~ 91 (360)
.++.+...+.+ +.|..+||+.+|+ +..-+.+|++.....|+
T Consensus 6 ~R~~ii~l~~~--G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLRE--GWSIREIAKRLGV----SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHH--T--HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred HHHHHHHHHHC--CCCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence 34556666666 6899999999999 89999999988776664
No 426
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=78.92 E-value=2.2 Score=38.23 Aligned_cols=47 Identities=9% Similarity=0.182 Sum_probs=42.1
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
...-|.+.|.+.|..|+.+||+.+|+ .++=++|=|..|...|++.+.
T Consensus 18 R~~~Il~~L~~~~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r~ 64 (269)
T PRK09802 18 RREQIIQRLRQQGSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVRA 64 (269)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEEE
Confidence 45667888888789999999999999 888999999999999999974
No 427
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=78.27 E-value=4.1 Score=32.07 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=37.0
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHh----CcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~----~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++-|...|=..|+.|+.+|.+.+ ++ ...-+..+|+-|...|+|.+.
T Consensus 5 ~E~~VM~vlW~~~~~t~~eI~~~l~~~~~~----~~tTv~T~L~rL~~KG~v~~~ 55 (130)
T TIGR02698 5 AEWEVMRVVWTLGETTSRDIIRILAEKKDW----SDSTIKTLLGRLVDKGCLTTE 55 (130)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhccCC----cHHHHHHHHHHHHHCCceeee
Confidence 455666777555799999977765 56 667789999999999999974
No 428
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=77.91 E-value=8.4 Score=28.15 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=38.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCC---CCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCC
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNV---KAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~---~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~ 116 (360)
|.+.+.+.-.+|.++....+.- .+ .-...+.=-+..|...|+|+.+ ..+.|.+|+.|+.++..+
T Consensus 25 i~~~v~~~~~ls~e~~~~~~~s-g~~~~~~~~ri~Wa~~~L~~aGli~~~---~rG~~~iT~~G~~~l~~~ 91 (92)
T PF14338_consen 25 IYERVAERFGLSDEERNERLPS-GQGYSRFKNRIRWARSYLKKAGLIERP---KRGIWRITEKGRKALAEH 91 (92)
T ss_pred HHHHHHHHhCCCHHHHHHHccc-CCcchhHHHhHHHHHHHHHHCCCccCC---CCCceEECHhHHHHHhhC
Confidence 4444444335566665555321 00 0112233356689999999974 577999999999877654
No 429
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=77.76 E-value=3.8 Score=36.30 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=24.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCC--------CCeEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYP--------QIKAVNFDL 229 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~ 229 (360)
.+.+|+|+|+|+|.++..+++... .++++.++.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~ 58 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEI 58 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-T
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcC
Confidence 358999999999999999888653 357888886
No 430
>PF13518 HTH_28: Helix-turn-helix domain
Probab=77.67 E-value=3.4 Score=26.20 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=30.2
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV 91 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~ 91 (360)
+.....+ | .|..++|+.+|+ +..-+.+|++.....|+
T Consensus 5 iv~~~~~-g-~s~~~~a~~~gi----s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 5 IVELYLE-G-ESVREIAREFGI----SRSTVYRWIKRYREGGI 41 (52)
T ss_pred HHHHHHc-C-CCHHHHHHHHCC----CHhHHHHHHHHHHhcCH
Confidence 4445554 3 499999999999 88999999999988875
No 431
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=77.26 E-value=9.2 Score=30.90 Aligned_cols=78 Identities=18% Similarity=0.160 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHhhCh--hhHh-----hh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceee
Q 018145 33 MGVVLPMATQAAIQLGV--FEII-----AK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYA 104 (360)
Q Consensus 33 ~~~~~~~~l~~a~~lgl--fd~L-----~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~ 104 (360)
.+.|...++.++...++ .+.| .- +-|.++.+|++.++.. |-..+..-|+.|...|+++..+....-.|.
T Consensus 65 f~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e---Dth~itYslrKL~k~gLit~t~~gkevTy~ 141 (199)
T COG5631 65 FGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE---DTHNITYSLRKLLKGGLITRTGSGKEVTYE 141 (199)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc---cchhHHHHHHHHHhccceecCCCCceEEEE
Confidence 35566677777665443 1222 11 1289999999999984 677889999999999999986543334798
Q ss_pred cchhchhhh
Q 018145 105 LNPVSKYFV 113 (360)
Q Consensus 105 ~t~~s~~~~ 113 (360)
.|+.|...+
T Consensus 142 vTa~G~~ac 150 (199)
T COG5631 142 VTALGHRAC 150 (199)
T ss_pred EecchHHHH
Confidence 998886543
No 432
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=77.15 E-value=7.2 Score=27.02 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=33.4
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHH--hcCcceeecc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL--VSHRVLECSV 96 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L--~~~g~l~~~~ 96 (360)
|.+.|...++.|+++|.+++|+ .+.-++..|--+ -..|+-....
T Consensus 15 li~mL~rp~GATi~ei~~atGW----q~HTvRgalsg~~kKklGl~i~s~ 60 (72)
T PF11994_consen 15 LIAMLRRPEGATIAEICEATGW----QPHTVRGALSGLLKKKLGLTITSE 60 (72)
T ss_pred HHHHHcCCCCCCHHHHHHhhCC----chhhHHHHHHHHHHHhcCcEEEee
Confidence 5566766568999999999999 777888777766 5567665543
No 433
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=76.30 E-value=2.7 Score=39.73 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=51.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C-CCC--CcEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VPE--GDAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~-~~~--~D~i~~~~v 264 (360)
+...|||||.|||-++.-..++..+ +++.++. ..|...|++. ++|+++..--.+ . .|. +|+++.--+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4578999999999999888887744 3677765 6666666541 456665543222 1 222 265544333
Q ss_pred cccCChhHHHHHHHHHHHhCC
Q 018145 265 LHCWDDDHCLRILKNCYKAVP 285 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~Lk 285 (360)
.-.+--+.+...++++++.|-
T Consensus 145 dtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhccccchhHHHHHHHhc
Confidence 222222334455677776664
No 434
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=76.23 E-value=6.5 Score=34.98 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-----CCCeEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL 229 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~ 229 (360)
+.+...++|+|||.|.++..+.+.. +...++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 4567899999999999999999988 5678899986
No 435
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=76.15 E-value=3.6 Score=30.19 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=32.9
Q ss_pred HHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHh
Q 018145 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (360)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~ 87 (360)
..+.++||+..|.+ ++.|-.|||+++|+ ....+.|+-+.|-
T Consensus 40 ~l~~R~~i~~~Ll~-~~~tQrEIa~~lGi----S~atIsR~sn~lk 80 (94)
T TIGR01321 40 DLGDRIRIVNELLN-GNMSQREIASKLGV----SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence 34668999998877 58999999999999 6667777666554
No 436
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=75.81 E-value=7.8 Score=37.11 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=57.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCC--CeEEEecc-hhHHHhCCCC------CCcEEEec-CCCC---CCC--CC-cEEE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY------AGVEHVGG-NMFE---SVP--EG-DAIL 260 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~------~~v~~~~~-d~~~---~~~--~~-D~i~ 260 (360)
.+..+.|+|.|.|.-.-.+..-.+. -.++.+|. ..+....... .+--++.. -+.+ +.+ .+ |+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4577888888766443333333333 34677786 3444433221 11112222 2222 322 33 9999
Q ss_pred eccccccCChhH-HHHHHH-HHHHhCCCCcEEEEEeeec
Q 018145 261 MKWILHCWDDDH-CLRILK-NCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 261 ~~~vlh~~~~~~-~~~~L~-~i~~~LkpgG~lli~e~~~ 297 (360)
+++.+|+++... ...+.+ ..++..++|+.++++|...
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999999987543 223333 4455678999999999654
No 437
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=75.66 E-value=6.5 Score=32.95 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=45.1
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
..|..++|++++. .+.-..|+|..|...|++++...+++....+|+.+..++.
T Consensus 19 ~~t~~ela~~l~~----S~qta~R~l~~le~~~~I~R~~~~~Gq~i~iTekG~~~L~ 71 (214)
T COG1339 19 KVTSSELAKRLGV----SSQTAARKLKELEDEGYITRTISKRGQLITITEKGIDLLY 71 (214)
T ss_pred cccHHHHHHHhCc----CcHHHHHHHHhhccCCcEEEEecCCCcEEEehHhHHHHHH
Confidence 5899999999999 7778899999999999999876566777888877776654
No 438
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=75.23 E-value=3.3 Score=36.77 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=41.9
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
...|++.|.+.|.+++++||+.+|+ .+.=+||=|+.|+..|++.+.
T Consensus 7 ~~~Il~~l~~~g~v~v~eLa~~~~V----S~~TIRRDL~~Le~~g~l~R~ 52 (253)
T COG1349 7 HQKILELLKEKGKVSVEELAELFGV----SEMTIRRDLNELEEQGLLLRV 52 (253)
T ss_pred HHHHHHHHHHcCcEEHHHHHHHhCC----CHHHHHHhHHHHHHCCcEEEE
Confidence 4567888999899999999999999 888999999999999999984
No 439
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=75.13 E-value=4.9 Score=36.01 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=38.2
Q ss_pred CCCHHHHHHHhC--cCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 58 ELSAPEIAAQLQ--AQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 58 ~~t~~~la~~~~--~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
..++++||++++ + ...-++.-|+.|...|+++. .+++.|..|..+-
T Consensus 137 ~~~~~~ia~~l~p~i----s~~ev~~sL~~L~~~glikk---~~~g~y~~t~~~l 184 (271)
T TIGR02147 137 ADDPEELAKRCFPKI----SAEQVKESLDLLERLGLIKK---NEDGFYKQTDKAV 184 (271)
T ss_pred CCCHHHHHHHhCCCC----CHHHHHHHHHHHHHCCCeeE---CCCCcEEeeccee
Confidence 447899999998 5 67788999999999999997 4667899886643
No 440
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=75.03 E-value=2.8 Score=30.25 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=35.1
Q ss_pred hhhHhhhC----CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 49 VFEIIAKA----GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 49 lfd~L~~~----g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+|.|.++ .-+|+..||+++++ .-...++.|+-|+..|++..
T Consensus 28 t~dkl~kEV~~~K~ITps~lserlkI----~~SlAr~~Lr~L~~kG~Ik~ 73 (86)
T PRK09334 28 LLKRVAKEVKKEKIVTPYTLASKYGI----KISVAKKVLRELEKRGVLVL 73 (86)
T ss_pred HHHHHHHHhccCcEEcHHHHHHHhcc----hHHHHHHHHHHHHHCCCEEE
Confidence 45555442 36899999999999 88999999999999999975
No 441
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=74.89 E-value=3.9 Score=39.45 Aligned_cols=55 Identities=27% Similarity=0.297 Sum_probs=41.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
|...|.. ||.|+.||++.+|+ ....+.+.|..| .|+|...+....-+|+++...+
T Consensus 5 ~~~~L~~-g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~~~gr~~~Y~l~~~~~ 59 (442)
T PRK09775 5 LTTLLLQ-GPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRFGKARATRYALLRPLR 59 (442)
T ss_pred HHHHHhc-CCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEeccCceEEEEeccccc
Confidence 4556666 79999999999999 899999999999 8887765333334677775443
No 442
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=74.88 E-value=5.1 Score=31.09 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
-|.|.++||..++- +..-++.-|.+|...|+++. .+++.|.++...
T Consensus 52 ipy~~e~LA~~~~~----~~~~V~~AL~~f~k~glIe~---~ed~~i~i~~~~ 97 (121)
T PF09681_consen 52 IPYTAEMLALEFDR----PVDTVRLALAVFQKLGLIEI---DEDGVIYIPNWE 97 (121)
T ss_pred CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE---ecCCeEEeecHH
Confidence 39999999999998 88999999999999999998 456777666443
No 443
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=74.41 E-value=20 Score=32.14 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=68.5
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-C----CCCCcEEEeccccccCCh--
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-S----VPEGDAILMKWILHCWDD-- 270 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~----~~~~D~i~~~~vlh~~~~-- 270 (360)
+++|+=||.|.+...+.+.. .-.+..+|. +.+++..+.+ +. .+..+|+.+ . .+..|+++.+.-...++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999988887764 223455676 6666554433 32 256677766 2 122399988655444332
Q ss_pred ------hHHHHHHHH---HHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 271 ------DHCLRILKN---CYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 271 ------~~~~~~L~~---i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
+....++.. +.+.++| +++++|.+..-. . ........+|.+.|++.||
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~-------------~--------~~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLL-------------T--------HDNGNTLKVILNTLEELGY 136 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchh-------------c--------cCchHHHHHHHHHHHhCCc
Confidence 112223332 3333444 366667654210 0 0011245678888899998
Q ss_pred ceeeE
Q 018145 342 KGINF 346 (360)
Q Consensus 342 ~~~~~ 346 (360)
.+...
T Consensus 137 ~~~~~ 141 (275)
T cd00315 137 NVYWK 141 (275)
T ss_pred EEEEE
Confidence 86444
No 444
>PF13814 Replic_Relax: Replication-relaxation
Probab=74.39 E-value=6.8 Score=32.84 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=45.1
Q ss_pred HhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc-------CCCceeecchhchhhhc
Q 018145 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-------GGERLYALNPVSKYFVS 114 (360)
Q Consensus 52 ~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-------~~~~~y~~t~~s~~~~~ 114 (360)
.|.+-..+|.++|+..++. +...++.+++.|+-|...|+|.+... ..+..|.+|+.|..++.
T Consensus 3 ~L~~~r~lt~~Qi~~l~~~-~~~~~~~~~rrL~~L~~~glv~~~~~~~~~~~g~~~~vy~Lt~~G~~~l~ 71 (191)
T PF13814_consen 3 LLARHRFLTTDQIARLLFP-SSKSERTARRRLKRLRELGLVDRFRRRVGARGGSQPYVYYLTPAGARLLA 71 (191)
T ss_pred hHHHhcCcCHHHHHHHHcC-CCcchHHHHHHHHHHhhCCcEEeecccccccCCCcceEEEECHHHHHHHH
Confidence 3455458999999999998 21112379999999999999998632 13346888888876664
No 445
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=74.22 E-value=2 Score=36.15 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=41.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+.-|.+.|...|..+.++||+.+|+ .+.-++|=|+.|...|++.+
T Consensus 8 R~~~Il~~l~~~~~~~~~~La~~~~v----S~~TiRRDl~~L~~~g~~~r 53 (185)
T PRK04424 8 RQKALQELIEENPFITDEELAEKFGV----SIQTIRLDRMELGIPELRER 53 (185)
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHCc----CHHHHHHHHHHHhcchHHHH
Confidence 34557788888889999999999999 88899999999999999996
No 446
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=74.05 E-value=22 Score=33.52 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=56.5
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC----CCCcE---EEecCCCCCCCCC-cEEEeccccccCChh
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVE---HVGGNMFESVPEG-DAILMKWILHCWDDD 271 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~v~---~~~~d~~~~~~~~-D~i~~~~vlh~~~~~ 271 (360)
+||-|+-..|.+++.++...|. ...|. -+.+.+.. ..++. +...+...+.|.+ |+|++..-= +-.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~---~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~~PK---~~~ 119 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY---SIGDS-YISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKVPK---TLA 119 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC---eeehH-HHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEEeCC---CHH
Confidence 7999999999999999976553 33552 22222211 12221 2223344456666 988774211 123
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 272 HCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
.....|..+...|+||+.+++.+..
T Consensus 120 ~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 120 LLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEEec
Confidence 5667899999999999998876644
No 447
>PRK12423 LexA repressor; Provisional
Probab=73.39 E-value=5.2 Score=34.12 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=30.2
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+-|..|||+++|+. .+..++..|+.|+..|+|+..
T Consensus 25 ~Ps~~eia~~~g~~---s~~~v~~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 25 PPSLAEIAQAFGFA---SRSVARKHVQALAEAGLIEVV 59 (202)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEec
Confidence 56999999999962 566789999999999999974
No 448
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=73.24 E-value=3.1 Score=31.08 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=35.4
Q ss_pred hhChhhHhhh----CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAK----AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~----~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+-.||+.|.. .-++++++|++++++ +..-++..++-|...|+|..
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEec
Confidence 3444455444 127999999999999 89999999999999999975
No 449
>PRK00215 LexA repressor; Validated
Probab=72.96 E-value=7.7 Score=33.04 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.1
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.|..+||+.+|++ +..-+.++|+.|+..|++++.
T Consensus 23 ~~s~~ela~~~~~~---~~~tv~~~l~~L~~~g~i~~~ 57 (205)
T PRK00215 23 PPSRREIADALGLR---SPSAVHEHLKALERKGFIRRD 57 (205)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEeC
Confidence 78999999999983 456889999999999999974
No 450
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=72.54 E-value=12 Score=36.75 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=56.3
Q ss_pred CcceEEEEcCCcc-hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC--------------C--------
Q 018145 197 NVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE--------------S-------- 252 (360)
Q Consensus 197 ~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~--------------~-------- 252 (360)
++.+++-+|+|.= ..+..+++.. +..++++|. +...+.++.. +.+++..|..+ +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 4689999999865 5555566665 456888887 6666666543 33443333211 0
Q ss_pred CC----CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 253 VP----EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 253 ~~----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
++ +.|+|+..-.+..-+.+ .-+.+...+.||||+.++=
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence 11 23999766544432221 2367888999999998653
No 451
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=72.48 E-value=5.2 Score=37.21 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=31.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL 229 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~ 229 (360)
++++.+..+.+...++|||.|.|+++.-+.-.| ++++.++|-
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIeg 184 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEG 184 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEecc
Confidence 344444335677899999999999998777665 788888886
No 452
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=72.43 E-value=3.7 Score=24.94 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=21.5
Q ss_pred hHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHh
Q 018145 51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (360)
Q Consensus 51 d~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~ 87 (360)
+.+.. +.|+++||+.+|+ ++..+.|..+...
T Consensus 3 ~~~~~--~~~l~~iA~~~g~----S~~~f~r~Fk~~~ 33 (42)
T PF00165_consen 3 ENLQQ--KLTLEDIAEQAGF----SPSYFSRLFKKET 33 (42)
T ss_dssp TTT-S--S--HHHHHHHHTS-----HHHHHHHHHHHT
T ss_pred ccccC--CCCHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 34444 7999999999999 8888888877553
No 453
>PRK09954 putative kinase; Provisional
Probab=72.12 E-value=5 Score=37.59 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=39.6
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCccee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~ 93 (360)
+..|++.|.+.+++|..+||+.+|+ ....+.+.++.|...|++.
T Consensus 5 ~~~il~~l~~~~~~s~~~la~~l~~----s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRNPLIQQNEIADILQI----SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcC
Confidence 3457888888789999999999999 8899999999999999996
No 454
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=71.48 E-value=20 Score=32.62 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=52.2
Q ss_pred CcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCC-cEEEeccccccCChhHH
Q 018145 197 NVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEG-DAILMKWILHCWDDDHC 273 (360)
Q Consensus 197 ~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~-D~i~~~~vlh~~~~~~~ 273 (360)
++.++|=+||| .|.++..+++......++.+|. +.-++.+.... . .|..+..+.+ |+|+-+-- .
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~--i~~~~~~~~g~Dvvid~~G-----~--- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---V--LDPEKDPRRDYRAIYDASG-----D--- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---c--cChhhccCCCCCEEEECCC-----C---
Confidence 34678888865 5677788888875444666675 55555554321 1 1111112223 88875422 1
Q ss_pred HHHHHHHHHhCCCCcEEEEEee
Q 018145 274 LRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 274 ~~~L~~i~~~LkpgG~lli~e~ 295 (360)
...+..+.+.|+|+|+++++-.
T Consensus 211 ~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHHhhhcCcEEEEEee
Confidence 2457888899999999998764
No 455
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.38 E-value=24 Score=32.60 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=53.1
Q ss_pred CCcceEEEEcCCc-chHHHHHHhh-CCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhH
Q 018145 196 QNVERLVDVGGGF-GVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDH 272 (360)
Q Consensus 196 ~~~~~vLDiG~G~-G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~ 272 (360)
.++.+||-+|||. |.++..++++ ....+++++|. +.-.+.++.... .....+..+. ...|+|+-.-- . ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~-~~~~~~~~~~-~g~d~viD~~G-~----~~ 234 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE-TYLIDDIPED-LAVDHAFECVG-G----RG 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc-eeehhhhhhc-cCCcEEEECCC-C----Cc
Confidence 4568899898763 4455666775 55567777776 555555543211 1111111111 01287774321 0 01
Q ss_pred HHHHHHHHHHhCCCCcEEEEEee
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
....+....+.|+|||+++++-.
T Consensus 235 ~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcCCcEEEEEee
Confidence 23468888999999999998764
No 456
>PRK08507 prephenate dehydrogenase; Validated
Probab=71.12 E-value=16 Score=32.71 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=47.6
Q ss_pred eEEEEcCCc--chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHH
Q 018145 200 RLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRI 276 (360)
Q Consensus 200 ~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~ 276 (360)
+|.=||+|. +.++..+.+.....+++++|. ++..+.+.+..-+... .+. .+..+.|+|+++ .+++....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~-~~~-~~~~~aD~Vila-----vp~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEI-VSF-EELKKCDVIFLA-----IPVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCccc-CCH-HHHhcCCEEEEe-----CcHHHHHHH
Confidence 466677764 345555555544456777886 5555544332211111 111 122235988875 466777888
Q ss_pred HHHHHHhCCCCcEEE
Q 018145 277 LKNCYKAVPGNGKVI 291 (360)
Q Consensus 277 L~~i~~~LkpgG~ll 291 (360)
++.+.. ++||..++
T Consensus 75 ~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 75 LPKLLD-IKENTTII 88 (275)
T ss_pred HHHHhc-cCCCCEEE
Confidence 888888 88876333
No 457
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=71.04 E-value=4.1 Score=26.65 Aligned_cols=34 Identities=32% Similarity=0.393 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
|-+++..||++.|+ ....+-.-||-|.+.|+++.
T Consensus 3 g~lvas~iAd~~Gi----TRSvIVNALRKleSaGvIes 36 (61)
T PF08222_consen 3 GRLVASKIADRVGI----TRSVIVNALRKLESAGVIES 36 (61)
T ss_dssp EEE-HHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred ceehHHHHHHHhCc----cHHHHHHHHHHHHhcCceee
Confidence 45788999999999 77788899999999999995
No 458
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=71.01 E-value=6.1 Score=32.81 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=40.4
Q ss_pred HhhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+..|+|.|...| ..|+-+||+++|+ +..-+.|-|.-|...|.|...
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i----~k~~vNr~LY~L~~~~~v~~~ 52 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGI----SKHEANRCLYRLLESDAVSCE 52 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCc----cHHHHHHHHHHHhhcCcEecC
Confidence 3556889999887 7999999999999 777899999999999999653
No 459
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=70.94 E-value=14 Score=27.45 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=44.3
Q ss_pred hhhHhhhCCCCCHHHHHHHh--------CcCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceeecchhchhhhc
Q 018145 49 VFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~~t~~s~~~~~ 114 (360)
|+..|.. +|.+--+|.+.+ .+ ++.-+...|+-|...|+|+.... .....|++|+.|+.++.
T Consensus 9 iL~~L~~-~~~~GYei~~~l~~~~~~~~~i----~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l~ 82 (100)
T TIGR03433 9 ILKTLSL-GPLHGYGIAQRIQQISEDVLQV----EEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQLA 82 (100)
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHcCCcccc----CCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHHH
Confidence 4445554 488888888875 34 67789999999999999997311 12246999999986654
No 460
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=70.19 E-value=10 Score=27.41 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=40.0
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+..++..|.+.++.++.+|++.+++ ....+.+-|..|...|++...
T Consensus 26 ~r~~il~~l~~~~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~ 72 (110)
T COG0640 26 TRLEILSLLAEGGELTVGELAEALGL----SQSTVSHHLKVLREAGLVELR 72 (110)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEE
Confidence 56667777766337899999999999 889999999999999999974
No 461
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=70.18 E-value=4.6 Score=32.90 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=32.3
Q ss_pred cEEEeccccccCC---------hhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 257 DAILMKWILHCWD---------DDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 257 D~i~~~~vlh~~~---------~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
|++.+.+++.|.. +..-.+.+.+++++|||||.|++.-|+-++
T Consensus 65 D~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 65 DFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 8887777775541 122346788999999999999999888754
No 462
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=69.84 E-value=29 Score=31.17 Aligned_cols=78 Identities=10% Similarity=0.156 Sum_probs=45.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCe----EEEecchhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIK----AVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDD 271 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~ 271 (360)
.++..||=+|++.|.....|.+.+|+.. .+.+|...-+...++...|+++..= ++++
T Consensus 57 ~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~f-------------------ftee 117 (294)
T PF01358_consen 57 DGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQRF-------------------FTEE 117 (294)
T ss_dssp TT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES----------------------HH
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehhh-------------------CCHH
Confidence 4557999999999999999999998865 8899963333333333445555531 2333
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 272 HCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.++++++.+.+ ..|+|.|.-.
T Consensus 118 ----~~~~~~~~~~~-~illISDIRS 138 (294)
T PF01358_consen 118 ----YARRLRDKLNL-KILLISDIRS 138 (294)
T ss_dssp ----HHHHHHHHHTT-EEEEEE----
T ss_pred ----HHHHHHhhcCC-CeEEEEeccc
Confidence 45566666666 6777777543
No 463
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=69.75 E-value=5.6 Score=30.14 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=47.4
Q ss_pred CCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC--C-----CCCcEEEeccccccCChhHHHH
Q 018145 206 GGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES--V-----PEGDAILMKWILHCWDDDHCLR 275 (360)
Q Consensus 206 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~--~-----~~~D~i~~~~vlh~~~~~~~~~ 275 (360)
||.|.++..+++.+ ....++++|. ++.++.+++ ..+.++.||..++ + .++|.+++.. +++..-.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILT-----DDDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEES-----SSHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEcc-----CCHHHHH
Confidence 45566666666654 3346888887 677776654 3489999999873 1 1237665532 2333333
Q ss_pred HHHHHHHhCCCCcEEEEE
Q 018145 276 ILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 276 ~L~~i~~~LkpgG~lli~ 293 (360)
.+....+.+.|..+++..
T Consensus 78 ~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 78 LIALLARELNPDIRIIAR 95 (116)
T ss_dssp HHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHCCCCeEEEE
Confidence 444455666777776653
No 464
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=69.65 E-value=6.7 Score=26.44 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHhCcCCCCCc-CcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 57 GELSAPEIAAQLQAQNVKAP-MMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~-~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
.+++.+++.++.|. +. ......+..+...|+++. +++++++|+.|.
T Consensus 19 ~Gi~~~~~~~~~g~----~~~~~~~~~l~~l~~~Gll~~----~~~~l~lT~~G~ 65 (66)
T PF06969_consen 19 EGIDLSEFEQRFGI----DFAEEFQKELEELQEDGLLEI----DGGRLRLTEKGR 65 (66)
T ss_dssp SEEEHHHHHHHTT------THHH-HHHHHHHHHTTSEEE-----SSEEEE-TTTG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHHCCCEEE----eCCEEEECcccC
Confidence 37899999999998 42 333677888999999996 678999998774
No 465
>PRK01381 Trp operon repressor; Provisional
Probab=69.17 E-value=6.9 Score=29.01 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=29.8
Q ss_pred HHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHH
Q 018145 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL 86 (360)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L 86 (360)
.+.+++|+..|.+ |.+|-.|||+.+|+ .-..+-|.-++|
T Consensus 41 l~~R~~I~~~L~~-g~~sQREIa~~lGv----SiaTITRgsn~L 79 (99)
T PRK01381 41 LGTRVRIVEELLR-GELSQREIKQELGV----GIATITRGSNSL 79 (99)
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHhCC----ceeeehhhHHHh
Confidence 4668999999988 58999999999999 544444444443
No 466
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=68.96 E-value=7.3 Score=25.80 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=41.6
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhc---CcceeecccCCCceeecchhch
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS---HRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~---~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
++.+|..+.+ .-|+..-|+.+++ .+..+.+.++.|.. .-++.+ .++.+.+|+.|+
T Consensus 3 ~l~~f~~v~~--~gs~~~AA~~l~i----s~~~vs~~i~~LE~~lg~~Lf~r----~~~~~~lT~~G~ 60 (60)
T PF00126_consen 3 QLRYFLAVAE--TGSISAAAEELGI----SQSAVSRQIKQLEEELGVPLFER----SGRGLRLTEAGE 60 (60)
T ss_dssp HHHHHHHHHH--HSSHHHHHHHCTS----SHHHHHHHHHHHHHHHTS-SEEE----CSSSEEE-HHHH
T ss_pred HHHHHHHHHH--hCCHHHHHHHhhc----cchHHHHHHHHHHHHhCCeEEEE----CCCCeeEChhhC
Confidence 4567888888 4599999999999 88899998888854 567775 455688888763
No 467
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=68.37 E-value=10 Score=32.41 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=35.9
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
.++-.+||+.+|+ ....++.-|+.|...|+|+.. .+..+..++.
T Consensus 34 ~L~e~~La~~lgV----SRtpVReAL~~L~~eGlv~~~---~~~G~~V~~~ 77 (212)
T TIGR03338 34 KLNESDIAARLGV----SRGPVREAFRALEEAGLVRNE---KNRGVFVREI 77 (212)
T ss_pred EecHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEe---cCCCeEEecC
Confidence 7888999999999 889999999999999999974 3334444443
No 468
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=68.36 E-value=6.3 Score=32.80 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
-.|-.+|++.+ |+ .++-++|.|+.|+..|+|.+.
T Consensus 70 fpSN~~La~r~~G~----s~~tlrR~l~~LveaGLI~rr 104 (177)
T PF03428_consen 70 FPSNAQLAERLNGM----SERTLRRHLARLVEAGLIVRR 104 (177)
T ss_pred ecCHHHHHHHHcCC----CHHHHHHHHHHHHHCCCeeec
Confidence 45789999999 99 999999999999999999974
No 469
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=68.32 E-value=10 Score=31.32 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=40.7
Q ss_pred HHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCC-CcCcHHHHHHHHhcCcceeec
Q 018145 43 AAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVK-APMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 43 ~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~-~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+-.+.-|++.|... +++|+++|.+.+.-..+. +..-+.|.|+.|+..|+|.+.
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 55567778887754 499999999998652221 455689999999999999985
No 470
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=68.19 E-value=11 Score=31.66 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=34.9
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.++..+.-.+|+|..+|++..|+ +. ..+++.|...|+|.+.
T Consensus 93 LEtLaiIay~qPiTr~eI~~irGv----~~---~~ii~~L~~~gLI~e~ 134 (188)
T PRK00135 93 LEVLAIIAYKQPITRIEIDEIRGV----NS---DGALQTLLAKGLIKEV 134 (188)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC----CH---HHHHHHHHHCCCeEEc
Confidence 345666766679999999999999 54 6899999999999864
No 471
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=67.61 E-value=3.5 Score=28.57 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=32.4
Q ss_pred CCCHHH---HHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 58 ELSAPE---IAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 58 ~~t~~~---la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+++... +.+.+|+ ++..++.-|.=|++.|+|+.........|++|+.+
T Consensus 20 ~i~~~~Li~ll~~~Gv----~e~avR~alsRl~~~G~L~~~r~Gr~~~Y~Lt~~g 70 (70)
T PF07848_consen 20 WIWVASLIRLLAAFGV----SESAVRTALSRLVRRGWLESERRGRRSYYRLTERG 70 (70)
T ss_dssp -EEHHHHHHHHCCTT------HHHHHHHHHHHHHTTSEEEECCCTEEEEEE-HHH
T ss_pred ceeHHHHHHHHHHcCC----ChHHHHHHHHHHHHcCceeeeecCccceEeeCCCC
Confidence 445544 5666777 89999999999999999998632233379998753
No 472
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=67.59 E-value=5.2 Score=30.11 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=35.6
Q ss_pred hhhHhhhC----CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKA----GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~----g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.||.|.++ .-+|+..||+++++ .-...++.|+.|++.|+|...
T Consensus 46 ~~~kl~kEV~~~K~ITp~~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 92 (105)
T PF03297_consen 46 TYDKLLKEVPKMKLITPSVLSERLKI----NGSLARKALRELESKGLIKPV 92 (105)
T ss_dssp HHHHHHHHCTTSSCECHHHHHHHHCC----SCHHHHHHHHHHHHCCSSEEE
T ss_pred HHHHHHHHhccCcEeeHHHHHHhHhh----HHHHHHHHHHHHHHCCCEEEE
Confidence 45555432 26899999999999 889999999999999999864
No 473
>PRK13699 putative methylase; Provisional
Probab=67.33 E-value=9.2 Score=33.30 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred cEEEecCCCC---CCCCC--cEEEec-------------cccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 242 VEHVGGNMFE---SVPEG--DAILMK-------------WILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 242 v~~~~~d~~~---~~~~~--D~i~~~-------------~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
.++..+|..+ .+|+. |+|+.. ..-.....+.....+++++|+|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
No 474
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=67.21 E-value=50 Score=26.83 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=43.3
Q ss_pred CcceEEEEcCCcchH--HHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCC-CCCCCcEEEeccccccCChhHH
Q 018145 197 NVERLVDVGGGFGVT--LSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHC 273 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~--~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~ 273 (360)
.+.+||=||||.=.. +..|++. +..+++++ |+..+...+.+.+++....+.+ ++...|+|+..- ++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT-----~d~e~ 83 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAAT-----NQHAV 83 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEECC-----CCHHH
Confidence 458999999886543 3345554 34555555 4444333333556666655554 454558888742 34444
Q ss_pred HHHHHHHHH
Q 018145 274 LRILKNCYK 282 (360)
Q Consensus 274 ~~~L~~i~~ 282 (360)
-..+....+
T Consensus 84 N~~i~~~a~ 92 (157)
T PRK06719 84 NMMVKQAAH 92 (157)
T ss_pred HHHHHHHHH
Confidence 445555444
No 475
>PRK13239 alkylmercury lyase; Provisional
Probab=66.82 E-value=5.6 Score=33.89 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=29.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~ 87 (360)
+..-|+..|.++.|.|.++||+.+|+ +.+.++..|+.|.
T Consensus 23 ~~~~llr~la~G~pvt~~~lA~~~~~----~~~~v~~~L~~l~ 61 (206)
T PRK13239 23 LLVPLLRLLAKGRPVSVTTLAAALGW----PVEEVEAVLEAMP 61 (206)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHhCC
Confidence 34456777887669999999999999 7776666666553
No 476
>PRK06545 prephenate dehydrogenase; Validated
Probab=66.74 E-value=28 Score=32.59 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=44.2
Q ss_pred eEEEEcCCc--chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHH
Q 018145 200 RLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRI 276 (360)
Q Consensus 200 ~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~ 276 (360)
+|.=||+|. |.++..+.+..+.+.+++.|. ......+....-+.-...|..+....+|+|+++ .|++....+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVila-----vP~~~~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLA-----VPVDATAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEe-----CCHHHHHHH
Confidence 466677763 455556666656666666664 222222211111111111111112334999886 456677788
Q ss_pred HHHHHH-hCCCCc
Q 018145 277 LKNCYK-AVPGNG 288 (360)
Q Consensus 277 L~~i~~-~LkpgG 288 (360)
++++.. .++|+.
T Consensus 77 l~~l~~~~l~~~~ 89 (359)
T PRK06545 77 LAELADLELKPGV 89 (359)
T ss_pred HHHHhhcCCCCCc
Confidence 999887 488874
No 477
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=66.65 E-value=6 Score=32.44 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|+|++||++++|. ....+..-++.|...+++...
T Consensus 40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~ 74 (177)
T COG1510 40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKV 74 (177)
T ss_pred CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhh
Confidence 49999999999999 888999999999999999875
No 478
>PHA02591 hypothetical protein; Provisional
Probab=66.42 E-value=7.4 Score=27.24 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=23.6
Q ss_pred hHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHH
Q 018145 51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLR 84 (360)
Q Consensus 51 d~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~ 84 (360)
..|.+. ++|.++||+.+|+ +.+.+++.|+
T Consensus 53 ~eL~eq-GlSqeqIA~~LGV----sqetVrKYL~ 81 (83)
T PHA02591 53 HELARK-GFTVEKIASLLGV----SVRKVRRYLE 81 (83)
T ss_pred HHHHHc-CCCHHHHHHHhCC----CHHHHHHHHh
Confidence 445554 7999999999999 8888888775
No 479
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=66.41 E-value=11 Score=32.84 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=35.0
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
++|-++||+.+|+ .++-+.|.|..|...|+|.. ...+.+...
T Consensus 179 ~lt~~~IA~~lGi----sretlsR~L~~L~~~GlI~~---~~~~~i~I~ 220 (230)
T PRK09391 179 PMSRRDIADYLGL----TIETVSRALSQLQDRGLIGL---SGARQIELR 220 (230)
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEe---cCCceEEEc
Confidence 7899999999999 88899999999999999985 222455543
No 480
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=66.35 E-value=8.6 Score=29.45 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=34.4
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
|.+.... |.|+.|||..+++ +...++-++.-|...|+|..
T Consensus 48 Il~lC~~--~~SVAEiAA~L~l----PlgVvrVLvsDL~~~G~v~v 87 (114)
T PF05331_consen 48 ILELCRR--PLSVAEIAARLGL----PLGVVRVLVSDLADAGLVRV 87 (114)
T ss_pred HHHHHCC--CccHHHHHHhhCC----CchhhhhhHHHHHhCCCEEE
Confidence 4444443 9999999999999 88899999999999999996
No 481
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=65.82 E-value=11 Score=24.20 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=35.2
Q ss_pred hHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 51 d~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.+.+.|++|+.++-+.+|+ .-..+-.+|+++-..|+..+.
T Consensus 3 ~~~~~~~~itv~~~rd~lg~----sRK~ai~lLE~lD~~g~T~R~ 43 (50)
T PF09107_consen 3 ELLQKNGEITVAEFRDLLGL----SRKYAIPLLEYLDREGITRRV 43 (50)
T ss_dssp HHHHTTSSBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCcCcHHHHHHHHCc----cHHHHHHHHHHHhccCCEEEe
Confidence 45556679999999999999 888899999999999999984
No 482
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=65.54 E-value=16 Score=31.67 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=37.9
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+++-.+||+.+|+ ....++.-|..|++.|+|+.. ....+..++.+.
T Consensus 39 ~l~e~~La~~~gv----SrtPVReAL~rL~~eGlv~~~---p~rG~~V~~~~~ 84 (230)
T COG1802 39 RLSEEELAEELGV----SRTPVREALRRLEAEGLVEIE---PNRGAFVAPLSL 84 (230)
T ss_pred CccHHHHHHHhCC----CCccHHHHHHHHHHCCCeEec---CCCCCeeCCCCH
Confidence 9999999999999 889999999999999999984 344454554443
No 483
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=65.51 E-value=9.6 Score=37.82 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=62.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCC-eEEEecchhHHHhCCCCCCcEEEecCCCCC-----C------C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDLPHVVQDAPSYAGVEHVGGNMFES-----V------P 254 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~-----~------~ 254 (360)
++-..|.-+.+...|||++|..|.+..-.++..|-. -++++|+..+- ..+++.....|+..+ + -
T Consensus 34 Qln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik----p~~~c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 34 QLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK----PIPNCDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred HHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc----cCCccchhhhhhhHHHHHHHHHHHHHhC
Confidence 455555545678899999999999999999998854 46888973221 112333333343321 0 1
Q ss_pred CCcEEEe---ccccccCChh------HHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 018145 255 EGDAILM---KWILHCWDDD------HCLRILKNCYKAVPGNGKVIVMNSIVPEI 300 (360)
Q Consensus 255 ~~D~i~~---~~vlh~~~~~------~~~~~L~~i~~~LkpgG~lli~e~~~~~~ 300 (360)
.+|+|+. .+|--.|..+ -....|+-+..-|..||. ++...+++.+
T Consensus 110 ~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~-fvtkvfrs~d 163 (780)
T KOG1098|consen 110 KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGT-FVTKVFRSED 163 (780)
T ss_pred CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCc-cccccccCCc
Confidence 1266653 2222222211 122446666777888998 4445554443
No 484
>PRK10736 hypothetical protein; Provisional
Probab=65.45 E-value=9.5 Score=35.84 Aligned_cols=52 Identities=8% Similarity=-0.086 Sum_probs=42.9
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
..|++.|.. .|.++++|++++|+ +...+...|-.|+-.|++.+ ..+++|+.-
T Consensus 311 ~~v~~~l~~-~~~~iD~L~~~~~l----~~~~v~~~L~~LEl~G~v~~---~~g~~~~~~ 362 (374)
T PRK10736 311 PELLANVGD-EVTPVDVVAERAGQ----PVPEVVTQLLELELAGWIAA---VPGGYVRLR 362 (374)
T ss_pred HHHHHhcCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEE---cCCcEEEEe
Confidence 467777765 48999999999999 88889999999999999998 355666553
No 485
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=65.04 E-value=13 Score=28.87 Aligned_cols=63 Identities=24% Similarity=0.316 Sum_probs=45.4
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
+.|+-|.+.|=..||.|+.||-+.+....+-.+.-+.-+|+-|+..|+|.+. ++++.|.-+|.
T Consensus 6 ~aE~eVM~ilW~~~~~t~~eI~~~l~~~~ews~sTV~TLl~RL~KKg~l~~~--kdgr~~~y~pL 68 (123)
T COG3682 6 AAEWEVMEILWSRGPATVREIIEELPADREWSYSTVKTLLNRLVKKGLLTRK--KDGRAFRYSPL 68 (123)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHhhcccccHHHHHHHHHHHHhccchhhh--hcCCeeeeecc
Confidence 4566777777777899999998887761110333477889999999999986 56777755543
No 486
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=64.96 E-value=14 Score=31.96 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++..+||+.+|+ ....++.-|+.|.+.|+|+..
T Consensus 30 ~L~e~eLae~lgV----SRtpVREAL~~L~~eGlv~~~ 63 (224)
T PRK11534 30 KLRMSLLTSRYAL----GVGPLREALSQLVAERLVTVV 63 (224)
T ss_pred cCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEEe
Confidence 7888999999999 888999999999999999974
No 487
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=64.94 E-value=7.6 Score=33.68 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
|+|-++||+.+|+ ...-+.|+|..|...|+|.. ..+.+...
T Consensus 184 ~lt~~~iA~~lG~----sr~tvsR~l~~l~~~g~I~~----~~~~i~i~ 224 (235)
T PRK11161 184 TMTRGDIGNYLGL----TVETISRLLGRFQKSGMLAV----KGKYITIE 224 (235)
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEe----cCCEEEEc
Confidence 7899999999999 88899999999999999996 44555544
No 488
>TIGR01714 phage_rep_org_N phage replisome organizer, putative, N-terminal region. This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region.
Probab=64.79 E-value=12 Score=29.00 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
-|.|.++||..++- +..-++.-|..+...|+++. .+++.|.++.
T Consensus 50 ipy~~e~LA~~~~~----~~~~V~~Al~~f~k~glIe~---~d~g~i~i~~ 93 (119)
T TIGR01714 50 APYNAEMLATMFNR----NVGDIRITLQTLESLGLIEK---KNNGDIFLEN 93 (119)
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE---ecCCcEEehh
Confidence 39999999999998 88899999999999999998 3445665554
No 489
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=64.60 E-value=34 Score=32.76 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=56.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEecc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKW 263 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~ 263 (360)
..+.+.....-.+.+|+-+|+|. |..+...++.+ +.+++++|. |.-.+.|+.. +++.+. ..+.....|+|+..-
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~-G~~~~~--~~e~v~~aDVVI~at 265 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME-GYEVMT--MEEAVKEGDIFVTTT 265 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc-CCEEcc--HHHHHcCCCEEEECC
Confidence 34444433224578999999996 44444455554 457888876 5555555442 333221 111223349998642
Q ss_pred ccccCChhHHHHHHHH-HHHhCCCCcEEEEEee
Q 018145 264 ILHCWDDDHCLRILKN-CYKAVPGNGKVIVMNS 295 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~-i~~~LkpgG~lli~e~ 295 (360)
.. ..++.. ..+.+||||+++.+-.
T Consensus 266 -----G~---~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 266 -----GN---KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred -----CC---HHHHHHHHHhcCCCCcEEEEeCC
Confidence 11 234555 4889999999987653
No 490
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=64.55 E-value=2.2 Score=29.58 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=33.6
Q ss_pred hhhHhhhCCCCCHHHHHHHh---CcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 49 VFEIIAKAGELSAPEIAAQL---QAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~---~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+|..... +..++.++|+.+ +.+. ..+.+..++.+|++.|+++.
T Consensus 16 ~~~~~~~-~~i~l~~ia~~l~~~~~k~--~~RRlYDI~NVLealgli~K 61 (71)
T PF02319_consen 16 LFESSPD-KSISLNEIADKLISENVKT--QRRRLYDIINVLEALGLIEK 61 (71)
T ss_dssp HHHHCCC-TEEEHHHHHHHCHHHCCHH--HCHHHHHHHHHHHHCTSEEE
T ss_pred HHHHCCC-CcccHHHHHHHHccccccc--ccchhhHHHHHHHHhCceee
Confidence 3444444 589999999999 7621 46788889999999999996
No 491
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=64.52 E-value=25 Score=35.54 Aligned_cols=88 Identities=13% Similarity=0.182 Sum_probs=53.2
Q ss_pred ceEEEEcCCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC-------CCCCcEEEeccccccC
Q 018145 199 ERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-------VPEGDAILMKWILHCW 268 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~vlh~~ 268 (360)
.+|+=+ |.|.++..+++.. .+..++++|. |+.++.+++ .+...+.||..++ ..++|++++.. +
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~--~-- 473 (601)
T PRK03659 401 PQVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITC--N-- 473 (601)
T ss_pred CCEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe--C--
Confidence 355555 4555555555543 3567888887 888887765 4688999999873 12337776542 1
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+++....+... .+.+.|..+++..-
T Consensus 474 d~~~n~~i~~~-~r~~~p~~~IiaRa 498 (601)
T PRK03659 474 EPEDTMKIVEL-CQQHFPHLHILARA 498 (601)
T ss_pred CHHHHHHHHHH-HHHHCCCCeEEEEe
Confidence 13344444444 44567888887643
No 492
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=64.41 E-value=47 Score=28.65 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=59.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-C-eEEEecc-hhHHHhCCCC--------------------------------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-I-KAVNFDL-PHVVQDAPSY-------------------------------- 239 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~-~~~~~D~-~~~~~~a~~~-------------------------------- 239 (360)
-+++.++-|==||+|+++.-+.--+++ + .+++-|+ +++++.|+++
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 356789999999999988776555544 3 3455666 8888877542
Q ss_pred ----------------CCcEEEecCCCCCC-------CCC-cEEEe---ccccccC----ChhHHHHHHHHHHHhCCCCc
Q 018145 240 ----------------AGVEHVGGNMFESV-------PEG-DAILM---KWILHCW----DDDHCLRILKNCYKAVPGNG 288 (360)
Q Consensus 240 ----------------~~v~~~~~d~~~~~-------~~~-D~i~~---~~vlh~~----~~~~~~~~L~~i~~~LkpgG 288 (360)
....+...|++++. +.. |+|+. -.-+-+| +.+.+..+|..++.+|.+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 01457788888832 122 88876 1222233 34567899999999996667
Q ss_pred EEEEEe
Q 018145 289 KVIVMN 294 (360)
Q Consensus 289 ~lli~e 294 (360)
.+.+.+
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 776644
No 493
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=64.37 E-value=7.7 Score=27.23 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHhCcCCCCCcCcHHHHHH-HHhcCcceeecccCCCceeecchhch
Q 018145 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLR-LLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 56 ~g~~t~~~la~~~~~~~~~~~~~~~~~L~-~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+||..++.||..+|. +..-++...+ +|...|++.+. ..++ .+|+.+-
T Consensus 23 ggPvGl~tlA~~l~e----d~~Tie~v~EPyLiq~G~I~RT---~rGR-~~T~~a~ 70 (76)
T PF05491_consen 23 GGPVGLDTLAAALGE----DKETIEDVIEPYLIQIGFIQRT---PRGR-VATPKAY 70 (76)
T ss_dssp TS-B-HHHHHHHTTS-----HHHHHHTTHHHHHHTTSEEEE---TTEE-EE-HHHH
T ss_pred CCCeeHHHHHHHHCC----CHhHHHHHhhHHHHHhhhHhhC---ccHH-HhHHHHH
Confidence 479999999999999 7766665555 88999999983 3344 4555543
No 494
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=64.32 E-value=11 Score=36.33 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=65.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC----C---CCC---CcEE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE----S---VPE---GDAI 259 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~----~---~~~---~D~i 259 (360)
....+|-||-|.|.+...+...+|....+++.+ |++.+.++++ .|...+-.|-.. . .++ .|++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 356788888888999999999999776666655 9999999764 222222222211 0 011 1777
Q ss_pred Ee----ccccccC--ChhH--HHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 260 LM----KWILHCW--DDDH--CLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 260 ~~----~~vlh~~--~~~~--~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
+. .. -|-+ |+.. ...+|..++..|+|.|.++|.=.+++.
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 64 12 2222 2222 347899999999999999776655543
No 495
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=64.04 E-value=7.1 Score=31.73 Aligned_cols=90 Identities=10% Similarity=0.103 Sum_probs=48.5
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC---CCC----CCcEEE-----ecCCCCCCCCCcEEEeccccc
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA---PSY----AGVEHV-----GGNMFESVPEGDAILMKWILH 266 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~~----~~v~~~-----~~d~~~~~~~~D~i~~~~vlh 266 (360)
+|.-||+|.+..+.+..-..-..+++.... ++.++.. +.. +.+.+. .-|..+....+|+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia---- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA---- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-----
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec----
Confidence 466788888876665433333456666665 4433322 211 222211 22222123334988874
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|....+.+++++...++++-.+++.-
T Consensus 77 -vPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 77 -VPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp -S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred -ccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 455566789999999998776666533
No 496
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=64.01 E-value=22 Score=28.59 Aligned_cols=61 Identities=8% Similarity=0.218 Sum_probs=42.2
Q ss_pred hhHhhhCCCCCHHHHHHHhCcCC-----CC-----CcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 50 FEIIAKAGELSAPEIAAQLQAQN-----VK-----APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 50 fd~L~~~g~~t~~~la~~~~~~~-----~~-----~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
+..+-..||+.+..|+..+|... |. .-..++..|+.|+.+|+|+.. . +.=.+|+.+..++.
T Consensus 59 lR~vY~~gpvGV~~L~~~yGg~k~~G~~P~h~~~~sg~iiR~~LqqLE~~glVek~---~-~GR~lT~~G~~~LD 129 (150)
T PRK09333 59 LRKVYIDGPVGVERLRTAYGGRKNRGVRPEHFVKGSGSIIRKILQQLEKAGLVEKT---K-KGRVITPKGRSLLD 129 (150)
T ss_pred HHHHHHcCCccHHHHHHHHCCCcCCCCCCCccccCccHHHHHHHHHHHHCCCeeeC---C-CCCEeCHHHHHHHH
Confidence 33444447999999999999821 11 112389999999999999963 2 33347777776654
No 497
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=63.97 E-value=2.9 Score=30.54 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=42.3
Q ss_pred EEEEcCCcchHHHHHHhhC-----CCCeEE-Eecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHH
Q 018145 201 LVDVGGGFGVTLSMITSKY-----PQIKAV-NFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHC 273 (360)
Q Consensus 201 vLDiG~G~G~~~~~l~~~~-----p~~~~~-~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~ 273 (360)
|.=||+| .++..+++.+ +..+++ ..+. ++-.+...+.-.+.+...+..+-...+|+|+++ .+++..
T Consensus 2 I~iIG~G--~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvila-----v~p~~~ 74 (96)
T PF03807_consen 2 IGIIGAG--NMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILA-----VKPQQL 74 (96)
T ss_dssp EEEESTS--HHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE------S-GGGH
T ss_pred EEEECCC--HHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEE-----ECHHHH
Confidence 3445554 4444444432 123454 3354 554444333233444443322222345999886 567788
Q ss_pred HHHHHHHHHhCCCCcEEE
Q 018145 274 LRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 274 ~~~L~~i~~~LkpgG~ll 291 (360)
..+++.+ ..+.++..++
T Consensus 75 ~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 75 PEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp HHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHH-hhccCCCEEE
Confidence 8899998 6666665544
No 498
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=63.64 E-value=8.7 Score=32.58 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=31.5
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
++|-++||+.+|+ .+.-+.|+|..|...|+|..
T Consensus 168 ~~t~~~lA~~lG~----tr~tvsR~l~~l~~~gii~~ 200 (211)
T PRK11753 168 KITRQEIGRIVGC----SREMVGRVLKMLEDQGLISA 200 (211)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 88999999999999999986
No 499
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=63.58 E-value=8.9 Score=31.95 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
|+|-++||+.+|+ ..+-+.|.|..|...|+|..
T Consensus 143 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~ 175 (193)
T TIGR03697 143 RLSHQAIAEAIGS----TRVTITRLLGDLRKKKLISI 175 (193)
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 88999999999999999996
No 500
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=63.55 E-value=8.1 Score=25.59 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=30.8
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHh
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~ 87 (360)
..++.|+..|-+.+..|.++||+.+|+ ..+-++.-+..|-
T Consensus 5 ~rq~~Ll~~L~~~~~~~~~ela~~l~~----S~rti~~~i~~L~ 44 (59)
T PF08280_consen 5 KRQLKLLELLLKNKWITLKELAKKLNI----SERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHHHHTSBBHHHHHHHCTS-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 346677888877679999999999999 7777777666654
Done!