Query 018145
Match_columns 360
No_of_seqs 181 out of 2176
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 4.2E-55 1.4E-59 407.0 30.8 330 21-360 5-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 2.4E-54 8.1E-59 403.6 35.6 344 17-360 13-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 2.9E-54 9.9E-59 403.7 34.9 357 1-360 1-366 (368)
4 3lst_A CALO1 methyltransferase 100.0 6.4E-49 2.2E-53 365.3 33.7 323 22-360 20-347 (348)
5 3gwz_A MMCR; methyltransferase 100.0 7E-49 2.4E-53 367.7 30.3 327 18-360 32-368 (369)
6 1fp1_D Isoliquiritigenin 2'-O- 100.0 3.1E-48 1.1E-52 363.9 31.5 341 19-360 17-372 (372)
7 3i53_A O-methyltransferase; CO 100.0 6.7E-49 2.3E-53 363.0 26.6 315 27-360 8-331 (332)
8 1zg3_A Isoflavanone 4'-O-methy 100.0 3.3E-48 1.1E-52 362.0 30.4 336 21-360 7-358 (358)
9 1fp2_A Isoflavone O-methyltran 100.0 5.3E-48 1.8E-52 359.7 31.2 336 19-360 11-352 (352)
10 2ip2_A Probable phenazine-spec 100.0 2.4E-47 8.3E-52 352.9 31.1 319 23-360 7-333 (334)
11 3dp7_A SAM-dependent methyltra 100.0 3.8E-45 1.3E-49 341.6 24.3 323 21-360 12-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 1.5E-44 5.2E-49 339.3 26.5 325 21-360 13-355 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 7E-44 2.4E-48 333.1 27.2 323 23-360 18-355 (360)
14 2r3s_A Uncharacterized protein 100.0 1.8E-43 6.2E-48 327.1 29.0 315 26-359 8-333 (335)
15 1x19_A CRTF-related protein; m 100.0 4.5E-43 1.6E-47 327.4 30.1 311 22-360 28-358 (359)
16 3mcz_A O-methyltransferase; ad 100.0 1.2E-42 4.3E-47 323.6 26.9 310 26-360 26-348 (352)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 2E-21 6.8E-26 172.4 16.3 163 195-360 68-256 (261)
18 3dtn_A Putative methyltransfer 99.8 6.4E-20 2.2E-24 160.2 17.6 173 186-359 33-224 (234)
19 3hnr_A Probable methyltransfer 99.8 2.1E-18 7.2E-23 149.0 16.6 163 187-360 36-211 (220)
20 3dlc_A Putative S-adenosyl-L-m 99.8 1.1E-19 3.7E-24 156.7 7.8 168 186-359 34-213 (219)
21 3dh0_A SAM dependent methyltra 99.8 2E-18 6.8E-23 149.1 14.2 155 186-360 27-192 (219)
22 3ujc_A Phosphoethanolamine N-m 99.8 2.9E-18 1E-22 152.4 14.0 155 186-350 45-207 (266)
23 1ve3_A Hypothetical protein PH 99.8 4.8E-19 1.6E-23 153.7 7.9 160 197-360 38-226 (227)
24 3dli_A Methyltransferase; PSI- 99.8 1.2E-17 4.1E-22 146.4 16.6 151 185-350 29-185 (240)
25 1vl5_A Unknown conserved prote 99.8 6.3E-18 2.1E-22 150.0 13.9 154 185-349 26-190 (260)
26 3ou2_A SAM-dependent methyltra 99.8 9.6E-18 3.3E-22 144.5 14.2 158 187-348 36-204 (218)
27 1kpg_A CFA synthase;, cyclopro 99.8 1.8E-17 6.3E-22 149.2 16.1 163 186-350 54-229 (287)
28 3bus_A REBM, methyltransferase 99.7 2.1E-17 7.3E-22 147.6 15.3 156 186-350 51-217 (273)
29 3hem_A Cyclopropane-fatty-acyl 99.7 3.3E-17 1.1E-21 148.6 16.0 163 186-351 62-245 (302)
30 1xtp_A LMAJ004091AAA; SGPP, st 99.7 4E-18 1.4E-22 150.5 9.6 149 186-350 83-239 (254)
31 2o57_A Putative sarcosine dime 99.7 2.9E-17 1E-21 148.6 14.6 154 186-350 68-235 (297)
32 3pfg_A N-methyltransferase; N, 99.7 7.2E-18 2.5E-22 149.9 10.2 163 196-360 49-248 (263)
33 1xxl_A YCGJ protein; structura 99.7 4.1E-17 1.4E-21 142.9 14.4 152 187-349 12-174 (239)
34 3h2b_A SAM-dependent methyltra 99.7 6.5E-18 2.2E-22 144.1 9.0 143 198-356 42-190 (203)
35 3vc1_A Geranyl diphosphate 2-C 99.7 6.1E-17 2.1E-21 147.6 15.5 163 177-350 97-270 (312)
36 3f4k_A Putative methyltransfer 99.7 3.2E-17 1.1E-21 145.0 13.3 152 187-351 36-198 (257)
37 3ege_A Putative methyltransfer 99.7 1.1E-16 3.8E-21 142.1 16.6 152 186-350 24-179 (261)
38 2fk8_A Methoxy mycolic acid sy 99.7 8E-17 2.7E-21 147.2 16.0 163 186-350 80-255 (318)
39 1nkv_A Hypothetical protein YJ 99.7 3.2E-17 1.1E-21 144.9 12.3 153 186-350 26-188 (256)
40 3kkz_A Uncharacterized protein 99.7 3.2E-17 1.1E-21 146.0 12.4 152 187-351 36-198 (267)
41 3mgg_A Methyltransferase; NYSG 99.7 2.6E-17 8.9E-22 147.3 10.9 151 195-349 35-198 (276)
42 3i9f_A Putative type 11 methyl 99.7 2.2E-17 7.5E-22 136.7 9.2 146 189-360 10-159 (170)
43 3bxo_A N,N-dimethyltransferase 99.7 2.3E-17 8E-22 144.2 9.8 163 196-360 39-238 (239)
44 3ocj_A Putative exported prote 99.7 4.7E-17 1.6E-21 147.8 12.1 165 195-360 116-303 (305)
45 2qe6_A Uncharacterized protein 99.7 2.5E-16 8.4E-21 140.7 15.8 141 196-345 76-238 (274)
46 2p7i_A Hypothetical protein; p 99.7 6.5E-17 2.2E-21 142.0 11.5 144 196-348 41-198 (250)
47 3e23_A Uncharacterized protein 99.7 4.9E-17 1.7E-21 139.5 10.3 139 195-350 41-183 (211)
48 1pjz_A Thiopurine S-methyltran 99.7 4.6E-17 1.6E-21 139.0 10.0 141 188-350 14-177 (203)
49 3gu3_A Methyltransferase; alph 99.7 9.9E-17 3.4E-21 144.2 12.6 161 187-349 12-190 (284)
50 2qm3_A Predicted methyltransfe 99.7 1.5E-16 5.2E-21 148.4 13.9 215 48-296 47-279 (373)
51 2ex4_A Adrenal gland protein A 99.7 3.2E-17 1.1E-21 143.7 8.7 138 197-350 79-226 (241)
52 4fsd_A Arsenic methyltransfera 99.7 1.5E-16 5E-21 149.1 13.2 144 196-348 82-250 (383)
53 3l8d_A Methyltransferase; stru 99.7 2.5E-16 8.5E-21 137.9 13.6 142 196-349 52-200 (242)
54 3jwg_A HEN1, methyltransferase 99.7 1.9E-16 6.4E-21 136.7 12.4 144 195-346 27-189 (219)
55 3g2m_A PCZA361.24; SAM-depende 99.7 1.1E-16 3.9E-21 144.9 11.4 163 184-350 71-275 (299)
56 3lcc_A Putative methyl chlorid 99.7 1.1E-16 3.8E-21 139.7 11.0 132 198-350 67-208 (235)
57 3jwh_A HEN1; methyltransferase 99.7 1.9E-16 6.6E-21 136.5 10.6 144 195-346 27-189 (217)
58 3bkx_A SAM-dependent methyltra 99.7 8.6E-16 2.9E-20 137.2 15.1 160 187-349 34-219 (275)
59 3sm3_A SAM-dependent methyltra 99.7 1.1E-15 3.7E-20 133.1 14.8 150 195-349 28-207 (235)
60 3ccf_A Cyclopropane-fatty-acyl 99.7 3.8E-16 1.3E-20 140.0 11.8 153 187-349 48-210 (279)
61 3bkw_A MLL3908 protein, S-aden 99.7 4.7E-16 1.6E-20 136.2 11.8 157 187-349 34-214 (243)
62 2p35_A Trans-aconitate 2-methy 99.7 2E-16 6.9E-21 140.0 9.5 150 187-343 24-184 (259)
63 3cgg_A SAM-dependent methyltra 99.7 9.3E-16 3.2E-20 129.3 12.8 132 187-349 38-175 (195)
64 3g5l_A Putative S-adenosylmeth 99.6 2.6E-16 8.8E-21 138.9 9.1 160 187-350 35-217 (253)
65 1vlm_A SAM-dependent methyltra 99.6 9.7E-16 3.3E-20 132.3 12.5 137 198-349 48-188 (219)
66 2yqz_A Hypothetical protein TT 99.6 1.3E-15 4.5E-20 135.0 12.8 146 195-347 37-194 (263)
67 4htf_A S-adenosylmethionine-de 99.6 7.8E-16 2.7E-20 138.3 11.3 155 187-350 60-233 (285)
68 1y8c_A S-adenosylmethionine-de 99.6 7.1E-16 2.4E-20 135.2 10.5 162 197-360 37-244 (246)
69 2zfu_A Nucleomethylin, cerebra 99.6 2.3E-15 7.8E-20 129.5 12.9 132 186-360 56-190 (215)
70 3g07_A 7SK snRNA methylphospha 99.6 3.1E-16 1E-20 141.6 7.7 145 197-349 46-269 (292)
71 2xvm_A Tellurite resistance pr 99.6 2E-15 7E-20 127.9 11.9 141 188-349 24-173 (199)
72 3d2l_A SAM-dependent methyltra 99.6 2.1E-15 7.1E-20 132.0 12.2 96 196-294 32-137 (243)
73 3ggd_A SAM-dependent methyltra 99.6 6.8E-16 2.3E-20 135.5 9.0 146 195-348 54-218 (245)
74 3e8s_A Putative SAM dependent 99.6 3.2E-16 1.1E-20 135.6 5.9 153 187-348 43-208 (227)
75 4hg2_A Methyltransferase type 99.6 1.8E-15 6.3E-20 133.5 10.7 97 197-298 39-139 (257)
76 2p8j_A S-adenosylmethionine-de 99.6 5.4E-16 1.8E-20 132.7 5.8 151 195-346 21-180 (209)
77 3cc8_A Putative methyltransfer 99.6 5.4E-15 1.8E-19 128.1 11.7 149 186-350 23-186 (230)
78 3g5t_A Trans-aconitate 3-methy 99.6 4.6E-15 1.6E-19 134.3 11.7 141 196-342 35-197 (299)
79 2aot_A HMT, histamine N-methyl 99.6 3.7E-15 1.3E-19 134.5 10.0 142 196-347 51-219 (292)
80 2gb4_A Thiopurine S-methyltran 99.6 8.7E-15 3E-19 128.9 12.0 132 196-348 67-226 (252)
81 2i62_A Nicotinamide N-methyltr 99.6 3.4E-15 1.2E-19 132.4 8.7 141 195-350 54-240 (265)
82 3giw_A Protein of unknown func 99.6 4.8E-14 1.7E-18 123.9 14.8 142 196-345 77-243 (277)
83 3thr_A Glycine N-methyltransfe 99.5 1.2E-15 4.2E-20 137.6 3.5 106 188-296 49-177 (293)
84 2a14_A Indolethylamine N-methy 99.5 1.7E-15 5.8E-20 134.6 4.3 140 195-349 53-238 (263)
85 1wzn_A SAM-dependent methyltra 99.5 1.9E-13 6.7E-18 120.2 17.3 106 187-295 32-146 (252)
86 1ri5_A MRNA capping enzyme; me 99.5 2.4E-14 8.1E-19 129.2 11.4 154 195-349 62-250 (298)
87 4e2x_A TCAB9; kijanose, tetron 99.5 1.1E-14 3.9E-19 137.8 9.0 151 184-350 95-254 (416)
88 3m70_A Tellurite resistance pr 99.5 3.3E-14 1.1E-18 127.7 11.4 140 187-347 111-258 (286)
89 3ofk_A Nodulation protein S; N 99.5 4.2E-15 1.4E-19 127.8 5.3 100 195-296 49-156 (216)
90 2kw5_A SLR1183 protein; struct 99.5 3.7E-14 1.3E-18 120.5 10.4 133 197-349 30-171 (202)
91 1fbn_A MJ fibrillarin homologu 99.5 2.3E-13 7.9E-18 118.3 15.5 141 195-360 72-227 (230)
92 3q87_B N6 adenine specific DNA 99.5 3.2E-13 1.1E-17 111.7 15.6 119 196-350 22-150 (170)
93 2g72_A Phenylethanolamine N-me 99.5 8.3E-15 2.8E-19 131.9 5.2 138 197-349 71-256 (289)
94 3e05_A Precorrin-6Y C5,15-meth 99.5 3.1E-13 1.1E-17 115.1 14.1 124 187-346 31-164 (204)
95 2gs9_A Hypothetical protein TT 99.5 9.5E-14 3.2E-18 118.9 10.7 136 187-340 28-171 (211)
96 2b3t_A Protein methyltransfera 99.5 3.3E-13 1.1E-17 120.6 14.3 143 186-360 100-275 (276)
97 3mq2_A 16S rRNA methyltransfer 99.5 1.4E-13 4.9E-18 118.4 11.5 143 195-350 25-185 (218)
98 3p2e_A 16S rRNA methylase; met 99.5 2.4E-13 8.1E-18 117.7 12.1 146 196-350 23-186 (225)
99 3grz_A L11 mtase, ribosomal pr 99.5 1.2E-13 4.2E-18 117.7 10.2 129 196-359 59-195 (205)
100 3uwp_A Histone-lysine N-methyl 99.5 1E-13 3.5E-18 127.8 9.7 112 186-301 163-295 (438)
101 1dus_A MJ0882; hypothetical pr 99.5 3.7E-13 1.3E-17 113.1 12.5 140 187-360 43-193 (194)
102 3orh_A Guanidinoacetate N-meth 99.4 2.3E-14 7.7E-19 125.2 3.4 133 196-346 59-207 (236)
103 4df3_A Fibrillarin-like rRNA/T 99.4 3.3E-13 1.1E-17 116.4 10.4 133 195-351 75-219 (233)
104 4dzr_A Protein-(glutamine-N5) 99.4 7.1E-14 2.4E-18 119.6 5.6 144 186-358 19-202 (215)
105 3htx_A HEN1; HEN1, small RNA m 99.4 1.1E-12 3.7E-17 129.7 13.9 109 187-297 712-837 (950)
106 3iv6_A Putative Zn-dependent a 99.4 4.2E-13 1.4E-17 118.1 8.6 106 186-295 35-149 (261)
107 1nt2_A Fibrillarin-like PRE-rR 99.4 2.4E-12 8.2E-17 110.2 12.9 137 195-360 55-209 (210)
108 1zx0_A Guanidinoacetate N-meth 99.4 1.4E-13 4.7E-18 120.2 5.1 100 196-296 59-172 (236)
109 3hm2_A Precorrin-6Y C5,15-meth 99.4 6.4E-13 2.2E-17 110.3 8.8 101 187-295 16-128 (178)
110 1af7_A Chemotaxis receptor met 99.4 3.2E-13 1.1E-17 119.9 7.1 96 197-292 105-250 (274)
111 2pxx_A Uncharacterized protein 99.4 4.8E-13 1.7E-17 114.5 7.5 101 196-297 41-162 (215)
112 1g8a_A Fibrillarin-like PRE-rR 99.4 7.2E-12 2.5E-16 108.4 14.1 141 195-360 71-226 (227)
113 3id6_C Fibrillarin-like rRNA/T 99.4 8.8E-12 3E-16 107.7 14.4 141 195-359 74-229 (232)
114 3evz_A Methyltransferase; NYSG 99.4 2.6E-12 8.9E-17 111.4 10.8 136 195-359 53-218 (230)
115 2ipx_A RRNA 2'-O-methyltransfe 99.4 1.6E-12 5.5E-17 113.1 9.3 141 195-359 75-230 (233)
116 1yzh_A TRNA (guanine-N(7)-)-me 99.4 3.4E-12 1.2E-16 109.5 11.2 98 197-294 41-156 (214)
117 3mti_A RRNA methylase; SAM-dep 99.4 1.5E-12 5E-17 109.0 8.6 100 195-296 20-137 (185)
118 3m33_A Uncharacterized protein 99.3 7.6E-13 2.6E-17 114.6 5.9 113 196-348 47-166 (226)
119 3njr_A Precorrin-6Y methylase; 99.3 8.1E-12 2.8E-16 106.4 12.1 121 188-347 47-178 (204)
120 3fzg_A 16S rRNA methylase; met 99.3 7.6E-13 2.6E-17 109.2 5.4 135 196-352 48-190 (200)
121 3bgv_A MRNA CAP guanine-N7 met 99.3 2.4E-12 8.2E-17 117.1 8.9 100 196-296 33-157 (313)
122 2nxc_A L11 mtase, ribosomal pr 99.3 2.9E-12 9.9E-17 113.0 8.6 128 196-360 119-254 (254)
123 3fpf_A Mtnas, putative unchara 99.3 3.3E-12 1.1E-16 113.6 8.7 96 195-295 120-223 (298)
124 1l3i_A Precorrin-6Y methyltran 99.3 3.6E-12 1.2E-16 106.9 8.6 100 188-295 25-135 (192)
125 1yb2_A Hypothetical protein TA 99.3 1.2E-12 4.3E-17 116.8 6.0 125 187-348 101-236 (275)
126 2vdw_A Vaccinia virus capping 99.3 1.5E-12 5.1E-17 117.7 6.5 152 197-349 48-246 (302)
127 3mb5_A SAM-dependent methyltra 99.3 3.9E-12 1.3E-16 112.1 9.0 127 186-349 83-222 (255)
128 1xdz_A Methyltransferase GIDB; 99.3 1.3E-12 4.6E-17 114.2 5.9 120 196-348 69-201 (240)
129 3eey_A Putative rRNA methylase 99.3 2.3E-12 7.9E-17 108.9 7.1 103 195-297 20-142 (197)
130 4dcm_A Ribosomal RNA large sub 99.3 4.1E-12 1.4E-16 118.2 9.1 108 187-295 213-335 (375)
131 3bwc_A Spermidine synthase; SA 99.3 5.1E-12 1.8E-16 114.3 9.3 129 196-349 94-240 (304)
132 2fca_A TRNA (guanine-N(7)-)-me 99.3 5.1E-12 1.8E-16 108.4 8.4 98 197-294 38-153 (213)
133 2ld4_A Anamorsin; methyltransf 99.3 3.6E-12 1.2E-16 105.8 7.2 109 195-341 10-128 (176)
134 2pjd_A Ribosomal RNA small sub 99.3 1.8E-12 6E-17 119.5 5.6 110 186-296 186-305 (343)
135 2avn_A Ubiquinone/menaquinone 99.3 4.2E-12 1.4E-16 112.4 7.4 98 197-297 54-155 (260)
136 3dxy_A TRNA (guanine-N(7)-)-me 99.3 2E-12 6.8E-17 111.3 4.9 99 197-295 34-151 (218)
137 2plw_A Ribosomal RNA methyltra 99.3 2.8E-11 9.4E-16 102.6 12.0 104 187-294 12-154 (201)
138 3hp7_A Hemolysin, putative; st 99.3 2E-11 6.9E-16 108.7 11.4 149 187-350 75-233 (291)
139 2h00_A Methyltransferase 10 do 99.3 2.8E-13 9.5E-18 119.5 -0.6 145 197-350 65-239 (254)
140 3g89_A Ribosomal RNA small sub 99.3 2.5E-12 8.6E-17 113.0 4.9 121 196-349 79-212 (249)
141 3lpm_A Putative methyltransfer 99.3 2.1E-11 7.2E-16 107.8 10.7 124 195-349 46-201 (259)
142 2pwy_A TRNA (adenine-N(1)-)-me 99.3 1E-11 3.6E-16 109.4 8.4 126 186-348 86-223 (258)
143 1ej0_A FTSJ; methyltransferase 99.3 2.5E-11 8.4E-16 100.2 10.2 106 187-296 12-138 (180)
144 1u2z_A Histone-lysine N-methyl 99.3 2.4E-11 8.1E-16 114.2 11.0 111 186-300 232-365 (433)
145 3kr9_A SAM-dependent methyltra 99.2 3.5E-11 1.2E-15 103.1 10.8 129 196-359 14-156 (225)
146 2yxd_A Probable cobalt-precorr 99.2 2.3E-11 7.9E-16 101.1 9.5 120 187-346 26-154 (183)
147 3lec_A NADB-rossmann superfami 99.2 3.7E-11 1.3E-15 103.2 10.7 129 196-359 20-162 (230)
148 3ckk_A TRNA (guanine-N(7)-)-me 99.2 2.2E-11 7.5E-16 106.0 9.4 100 196-295 45-169 (235)
149 3opn_A Putative hemolysin; str 99.2 2.8E-11 9.7E-16 105.0 9.8 141 187-350 27-185 (232)
150 2y1w_A Histone-arginine methyl 99.2 8.1E-12 2.8E-16 115.3 6.7 105 187-293 41-154 (348)
151 3b3j_A Histone-arginine methyl 99.2 1.1E-11 3.9E-16 118.7 7.7 106 185-292 147-261 (480)
152 1o9g_A RRNA methyltransferase; 99.2 2.3E-11 7.9E-16 106.9 9.0 101 196-296 50-216 (250)
153 3duw_A OMT, O-methyltransferas 99.2 1.4E-11 4.8E-16 106.2 7.3 99 195-298 56-171 (223)
154 3lbf_A Protein-L-isoaspartate 99.2 1.8E-11 6.3E-16 104.4 7.8 99 187-296 68-176 (210)
155 3p9n_A Possible methyltransfer 99.2 4.2E-11 1.4E-15 100.5 9.8 100 196-297 43-156 (189)
156 2frn_A Hypothetical protein PH 99.2 5.5E-11 1.9E-15 106.2 10.8 120 196-345 124-253 (278)
157 2yxe_A Protein-L-isoaspartate 99.2 2.2E-11 7.5E-16 104.4 7.6 100 187-295 68-178 (215)
158 1jsx_A Glucose-inhibited divis 99.2 1.4E-11 4.7E-16 104.9 6.2 92 197-294 65-165 (207)
159 1o54_A SAM-dependent O-methylt 99.2 1.8E-11 6.3E-16 109.2 7.2 102 186-295 102-214 (277)
160 3tfw_A Putative O-methyltransf 99.2 3.6E-11 1.2E-15 105.6 8.3 99 195-298 61-174 (248)
161 2fyt_A Protein arginine N-meth 99.2 6.3E-11 2.1E-15 108.9 10.2 101 187-291 55-168 (340)
162 3gnl_A Uncharacterized protein 99.2 9E-11 3.1E-15 101.6 10.3 129 196-359 20-162 (244)
163 2bm8_A Cephalosporin hydroxyla 99.2 6.4E-11 2.2E-15 103.1 9.4 94 197-295 81-188 (236)
164 3q7e_A Protein arginine N-meth 99.2 2.9E-11 9.9E-16 111.6 7.5 97 195-292 64-171 (349)
165 3gjy_A Spermidine synthase; AP 99.2 2.7E-11 9.1E-16 109.1 6.8 98 198-295 90-201 (317)
166 3lcv_B Sisomicin-gentamicin re 99.2 1.7E-11 5.8E-16 105.8 5.2 136 196-352 131-274 (281)
167 3ntv_A MW1564 protein; rossman 99.2 1.7E-11 5.6E-16 106.6 5.2 99 195-298 69-180 (232)
168 3u81_A Catechol O-methyltransf 99.2 1.4E-11 4.7E-16 106.3 4.5 100 195-297 56-173 (221)
169 3r3h_A O-methyltransferase, SA 99.2 3.9E-11 1.3E-15 104.9 7.2 99 196-299 59-175 (242)
170 2b25_A Hypothetical protein; s 99.2 2.8E-11 9.5E-16 111.2 6.3 103 186-296 95-221 (336)
171 3sso_A Methyltransferase; macr 99.2 2.6E-11 8.9E-16 111.6 5.8 104 186-297 207-327 (419)
172 1p91_A Ribosomal RNA large sub 99.1 5.3E-11 1.8E-15 105.6 7.7 93 196-297 84-181 (269)
173 1vbf_A 231AA long hypothetical 99.1 4.9E-11 1.7E-15 103.4 7.2 100 186-296 60-167 (231)
174 3r0q_C Probable protein argini 99.1 5.2E-11 1.8E-15 111.0 7.8 101 195-296 61-171 (376)
175 3adn_A Spermidine synthase; am 99.1 5.1E-11 1.7E-15 107.0 7.4 100 196-295 82-199 (294)
176 2ozv_A Hypothetical protein AT 99.1 5.2E-11 1.8E-15 105.3 7.3 100 195-294 34-170 (260)
177 1jg1_A PIMT;, protein-L-isoasp 99.1 4.6E-11 1.6E-15 104.0 6.9 101 185-295 80-190 (235)
178 1dl5_A Protein-L-isoaspartate 99.1 5.1E-11 1.8E-15 108.5 7.4 101 187-296 66-177 (317)
179 3tr6_A O-methyltransferase; ce 99.1 3.9E-11 1.3E-15 103.5 6.0 98 196-298 63-178 (225)
180 2vdv_E TRNA (guanine-N(7)-)-me 99.1 4.6E-11 1.6E-15 104.7 6.1 95 195-294 47-173 (246)
181 2gpy_A O-methyltransferase; st 99.1 3.5E-11 1.2E-15 104.5 5.2 98 195-297 52-163 (233)
182 3dmg_A Probable ribosomal RNA 99.1 9.3E-11 3.2E-15 109.1 8.0 97 197-295 233-341 (381)
183 1nv8_A HEMK protein; class I a 99.1 1.7E-10 5.9E-15 103.2 8.9 94 197-292 123-247 (284)
184 2esr_A Methyltransferase; stru 99.1 7E-11 2.4E-15 98.0 5.8 98 196-297 30-141 (177)
185 1g6q_1 HnRNP arginine N-methyl 99.1 1.3E-10 4.4E-15 106.3 8.0 96 196-292 37-143 (328)
186 3dou_A Ribosomal RNA large sub 99.1 5.4E-10 1.9E-14 93.9 11.0 105 185-295 13-140 (191)
187 2nyu_A Putative ribosomal RNA 99.1 6.2E-10 2.1E-14 93.7 11.1 104 188-295 13-146 (196)
188 3bzb_A Uncharacterized protein 99.1 7.5E-10 2.6E-14 99.0 12.1 96 195-293 77-204 (281)
189 2hnk_A SAM-dependent O-methylt 99.1 9.9E-11 3.4E-15 102.1 6.2 99 195-298 58-185 (239)
190 2fhp_A Methylase, putative; al 99.1 8.7E-11 3E-15 98.1 4.6 98 196-297 43-157 (187)
191 3c3p_A Methyltransferase; NP_9 99.1 6.6E-11 2.3E-15 101.1 3.9 97 197-298 56-164 (210)
192 3dr5_A Putative O-methyltransf 99.1 7.9E-11 2.7E-15 101.5 4.3 95 198-297 57-166 (221)
193 1sui_A Caffeoyl-COA O-methyltr 99.0 1.1E-10 3.7E-15 102.4 4.9 98 195-297 77-193 (247)
194 1ixk_A Methyltransferase; open 99.0 4E-10 1.4E-14 102.4 8.5 103 195-297 116-249 (315)
195 2oxt_A Nucleoside-2'-O-methylt 99.0 8.6E-10 3E-14 97.4 10.2 98 195-296 72-187 (265)
196 2avd_A Catechol-O-methyltransf 99.0 1E-10 3.5E-15 101.2 3.7 99 195-298 67-183 (229)
197 1r18_A Protein-L-isoaspartate( 99.0 2.3E-10 7.9E-15 98.9 5.8 93 195-295 82-195 (227)
198 2ift_A Putative methylase HI07 99.0 1E-10 3.4E-15 99.3 3.3 97 197-297 53-166 (201)
199 1i9g_A Hypothetical protein RV 99.0 4E-10 1.4E-14 100.5 7.4 103 186-296 89-205 (280)
200 2p41_A Type II methyltransfera 99.0 1.1E-09 3.8E-14 98.7 10.3 97 195-294 80-191 (305)
201 3frh_A 16S rRNA methylase; met 99.0 6.6E-10 2.3E-14 95.0 8.2 95 196-294 104-206 (253)
202 1ws6_A Methyltransferase; stru 99.0 1.1E-10 3.7E-15 96.0 3.4 95 197-297 41-150 (171)
203 2i7c_A Spermidine synthase; tr 99.0 1.6E-10 5.5E-15 103.3 4.7 99 196-294 77-192 (283)
204 2wa2_A Non-structural protein 99.0 7.7E-10 2.6E-14 98.3 9.1 98 195-296 80-195 (276)
205 3tma_A Methyltransferase; thum 99.0 6.9E-10 2.4E-14 102.6 9.0 110 185-295 192-318 (354)
206 1xj5_A Spermidine synthase 1; 99.0 2.1E-10 7.3E-15 104.7 5.0 98 196-293 119-234 (334)
207 1iy9_A Spermidine synthase; ro 99.0 2.2E-10 7.4E-15 102.1 4.9 98 197-294 75-189 (275)
208 1uir_A Polyamine aminopropyltr 99.0 2.2E-10 7.6E-15 104.0 4.9 100 196-295 76-196 (314)
209 2yvl_A TRMI protein, hypotheti 99.0 1E-09 3.5E-14 95.9 9.0 100 187-296 82-192 (248)
210 2pbf_A Protein-L-isoaspartate 99.0 5E-10 1.7E-14 96.7 6.9 94 195-296 78-195 (227)
211 2o07_A Spermidine synthase; st 99.0 2.5E-10 8.7E-15 103.0 4.7 100 196-295 94-210 (304)
212 1mjf_A Spermidine synthase; sp 99.0 3.2E-10 1.1E-14 101.3 5.3 98 196-294 74-193 (281)
213 3gdh_A Trimethylguanosine synt 99.0 2E-11 6.8E-16 106.6 -2.6 138 196-354 77-224 (241)
214 2b2c_A Spermidine synthase; be 99.0 2.4E-10 8.1E-15 103.6 4.1 99 196-294 107-222 (314)
215 2fpo_A Methylase YHHF; structu 99.0 4.8E-10 1.6E-14 95.2 5.6 97 197-297 54-163 (202)
216 2pt6_A Spermidine synthase; tr 99.0 3E-10 1E-14 103.4 4.6 99 196-294 115-230 (321)
217 1i1n_A Protein-L-isoaspartate 99.0 1.1E-09 3.9E-14 94.3 8.0 94 195-296 75-184 (226)
218 3c3y_A Pfomt, O-methyltransfer 99.0 2.6E-10 9E-15 99.3 3.9 98 195-297 68-184 (237)
219 3cbg_A O-methyltransferase; cy 99.0 2.1E-10 7.3E-15 99.5 3.2 98 196-298 71-186 (232)
220 1zq9_A Probable dimethyladenos 98.9 6.4E-10 2.2E-14 99.6 5.8 102 186-291 18-144 (285)
221 4hc4_A Protein arginine N-meth 98.9 1.3E-09 4.4E-14 100.7 7.2 95 197-292 83-187 (376)
222 1inl_A Spermidine synthase; be 98.9 6.2E-10 2.1E-14 100.2 4.9 98 197-294 90-205 (296)
223 3a27_A TYW2, uncharacterized p 98.9 6.5E-10 2.2E-14 98.9 4.9 97 195-297 117-222 (272)
224 1ne2_A Hypothetical protein TA 98.9 2.2E-09 7.5E-14 90.7 7.1 88 195-284 49-139 (200)
225 4azs_A Methyltransferase WBDD; 98.9 8.8E-10 3E-14 108.2 5.0 102 196-299 65-178 (569)
226 2cmg_A Spermidine synthase; tr 98.9 2.7E-09 9.2E-14 94.2 7.6 90 196-294 71-171 (262)
227 3b5i_A S-adenosyl-L-methionine 98.8 5.2E-08 1.8E-12 89.8 15.0 151 198-348 53-297 (374)
228 2yxl_A PH0851 protein, 450AA l 98.8 6.7E-09 2.3E-13 99.0 8.8 103 195-297 257-392 (450)
229 3k6r_A Putative transferase PH 98.8 8.1E-09 2.8E-13 91.4 8.4 119 195-343 123-251 (278)
230 1wy7_A Hypothetical protein PH 98.8 2.7E-08 9.3E-13 84.3 11.1 88 196-284 48-141 (207)
231 2xyq_A Putative 2'-O-methyl tr 98.8 1E-08 3.5E-13 91.3 8.7 116 195-347 61-195 (290)
232 2f8l_A Hypothetical protein LM 98.8 5.1E-09 1.8E-13 96.3 6.6 100 196-295 129-257 (344)
233 2ih2_A Modification methylase 98.8 1.7E-08 5.8E-13 95.4 10.2 105 187-295 30-165 (421)
234 3tm4_A TRNA (guanine N2-)-meth 98.8 1.6E-08 5.6E-13 93.9 9.8 122 195-350 215-353 (373)
235 1yub_A Ermam, rRNA methyltrans 98.8 2.4E-09 8.3E-14 93.6 3.7 106 186-294 19-145 (245)
236 1qam_A ERMC' methyltransferase 98.8 8.1E-09 2.8E-13 90.2 7.0 104 185-291 19-143 (244)
237 2h1r_A Dimethyladenosine trans 98.8 8.1E-09 2.8E-13 93.0 7.2 100 185-288 31-153 (299)
238 3ajd_A Putative methyltransfer 98.8 3.7E-09 1.3E-13 94.1 4.9 103 195-297 81-214 (274)
239 1m6e_X S-adenosyl-L-methionnin 98.7 2.6E-07 8.9E-12 84.5 15.9 151 196-346 50-277 (359)
240 2efj_A 3,7-dimethylxanthine me 98.7 1.6E-07 5.4E-12 86.6 14.1 150 198-347 53-290 (384)
241 1sqg_A SUN protein, FMU protei 98.7 2.5E-08 8.4E-13 94.5 7.8 103 195-297 244-377 (429)
242 2igt_A SAM dependent methyltra 98.7 2.3E-08 7.9E-13 91.2 6.9 96 197-296 153-274 (332)
243 3m6w_A RRNA methylase; rRNA me 98.7 1.4E-08 4.7E-13 96.4 5.4 102 195-297 99-232 (464)
244 2frx_A Hypothetical protein YE 98.6 4.9E-08 1.7E-12 93.3 8.4 101 197-297 117-249 (479)
245 3m4x_A NOL1/NOP2/SUN family pr 98.6 5.1E-08 1.7E-12 92.3 5.8 103 195-297 103-237 (456)
246 1rjd_A PPM1P, carboxy methyl t 98.5 9E-07 3.1E-11 80.5 12.1 144 196-342 96-281 (334)
247 3k0b_A Predicted N6-adenine-sp 98.5 1.9E-07 6.5E-12 87.1 7.4 111 184-295 189-351 (393)
248 2okc_A Type I restriction enzy 98.5 8.4E-08 2.9E-12 91.3 4.8 109 186-295 161-308 (445)
249 1wxx_A TT1595, hypothetical pr 98.5 6.5E-08 2.2E-12 90.2 3.7 97 197-295 209-326 (382)
250 3ldg_A Putative uncharacterize 98.5 5.3E-07 1.8E-11 83.7 9.7 111 184-295 182-344 (384)
251 2yx1_A Hypothetical protein MJ 98.5 1.1E-07 3.9E-12 86.9 5.1 93 196-297 194-294 (336)
252 3ftd_A Dimethyladenosine trans 98.5 5.2E-07 1.8E-11 78.8 9.1 84 186-271 21-110 (249)
253 2as0_A Hypothetical protein PH 98.5 6.5E-08 2.2E-12 90.6 3.4 98 197-295 217-336 (396)
254 3gru_A Dimethyladenosine trans 98.4 4E-07 1.4E-11 81.4 7.8 79 185-266 39-125 (295)
255 4dmg_A Putative uncharacterize 98.4 4E-07 1.4E-11 84.9 7.9 99 196-296 213-328 (393)
256 2b78_A Hypothetical protein SM 98.4 8.7E-08 3E-12 89.4 3.4 99 196-295 211-332 (385)
257 3evf_A RNA-directed RNA polyme 98.4 1.5E-06 5.1E-11 75.6 10.2 106 186-292 64-182 (277)
258 2qfm_A Spermine synthase; sper 98.4 1.8E-07 6.2E-12 85.2 4.4 98 196-294 187-314 (364)
259 4gqb_A Protein arginine N-meth 98.4 2.3E-07 7.9E-12 90.7 5.5 126 159-291 323-464 (637)
260 3ldu_A Putative methylase; str 98.4 3.6E-07 1.2E-11 85.1 6.5 111 184-295 183-345 (385)
261 3o4f_A Spermidine synthase; am 98.4 4.1E-07 1.4E-11 80.7 6.2 100 196-295 82-199 (294)
262 3fut_A Dimethyladenosine trans 98.4 7.9E-07 2.7E-11 78.5 7.6 89 186-279 37-133 (271)
263 3c0k_A UPF0064 protein YCCW; P 98.3 2E-07 7E-12 87.3 3.7 98 196-295 219-340 (396)
264 1uwv_A 23S rRNA (uracil-5-)-me 98.3 1.3E-06 4.5E-11 82.7 9.0 99 186-293 276-388 (433)
265 1qyr_A KSGA, high level kasuga 98.3 7.9E-07 2.7E-11 77.7 6.1 90 185-277 10-111 (252)
266 3ua3_A Protein arginine N-meth 98.3 9.7E-07 3.3E-11 86.3 7.0 126 159-291 378-531 (745)
267 3v97_A Ribosomal RNA large sub 98.3 5.3E-07 1.8E-11 90.3 5.4 96 197-295 539-658 (703)
268 2jjq_A Uncharacterized RNA met 98.3 1.4E-06 4.7E-11 82.1 7.6 91 196-294 289-387 (425)
269 3uzu_A Ribosomal RNA small sub 98.3 3.9E-07 1.3E-11 80.9 3.5 68 186-254 32-105 (279)
270 3tqs_A Ribosomal RNA small sub 98.2 1.3E-06 4.6E-11 76.4 5.9 66 186-254 19-90 (255)
271 1m6y_A S-adenosyl-methyltransf 98.2 1.3E-06 4.3E-11 78.4 4.5 77 185-262 15-105 (301)
272 2qy6_A UPF0209 protein YFCK; s 98.1 4E-06 1.4E-10 73.4 6.9 96 197-292 60-211 (257)
273 3gcz_A Polyprotein; flavivirus 98.1 5.2E-06 1.8E-10 72.3 7.4 110 184-295 78-202 (282)
274 3bt7_A TRNA (uracil-5-)-methyl 98.0 2.4E-06 8E-11 79.2 2.8 87 198-294 214-326 (369)
275 2r6z_A UPF0341 protein in RSP 98.0 1.1E-05 3.6E-10 70.8 6.3 99 195-297 81-219 (258)
276 3v97_A Ribosomal RNA large sub 97.9 1.6E-05 5.3E-10 79.7 8.0 111 184-295 178-348 (703)
277 2dul_A N(2),N(2)-dimethylguano 97.9 6.1E-06 2.1E-10 76.4 4.5 92 197-294 47-164 (378)
278 2b9e_A NOL1/NOP2/SUN domain fa 97.9 2E-05 6.7E-10 71.0 7.7 102 195-297 100-237 (309)
279 3iei_A Leucine carboxyl methyl 97.9 0.0003 1E-08 63.7 14.8 143 197-349 90-281 (334)
280 3eld_A Methyltransferase; flav 97.8 9.1E-05 3.1E-09 64.9 10.2 108 186-295 71-192 (300)
281 4auk_A Ribosomal RNA large sub 97.8 8.7E-05 3E-09 67.6 10.3 96 195-295 209-307 (375)
282 2vz8_A Fatty acid synthase; tr 97.8 7.5E-06 2.6E-10 92.4 3.4 142 197-348 1240-1394(2512)
283 2ar0_A M.ecoki, type I restric 97.8 1.8E-05 6.1E-10 76.8 5.1 107 188-295 161-313 (541)
284 2k4m_A TR8_protein, UPF0146 pr 97.8 5.1E-05 1.7E-09 59.3 6.6 83 196-295 34-122 (153)
285 3axs_A Probable N(2),N(2)-dime 97.7 1.9E-05 6.4E-10 73.3 4.1 93 196-294 51-158 (392)
286 3p8z_A Mtase, non-structural p 97.7 0.00019 6.5E-09 60.5 8.9 106 184-292 66-184 (267)
287 2px2_A Genome polyprotein [con 97.6 0.00018 6.3E-09 61.6 8.7 109 185-295 62-184 (269)
288 1xmk_A Double-stranded RNA-spe 97.6 6.1E-05 2.1E-09 52.6 4.2 63 45-112 12-75 (79)
289 2uyo_A Hypothetical protein ML 97.6 0.0006 2E-08 61.2 11.9 144 197-344 102-274 (310)
290 3c6k_A Spermine synthase; sper 97.6 3.5E-05 1.2E-09 70.5 3.4 97 197-294 205-331 (381)
291 3s1s_A Restriction endonucleas 97.5 0.00032 1.1E-08 69.9 9.9 100 196-295 320-466 (878)
292 3khk_A Type I restriction-modi 97.5 5.9E-05 2E-09 73.1 4.2 108 186-295 235-396 (544)
293 3lkz_A Non-structural protein 97.5 0.00085 2.9E-08 58.5 10.8 106 185-292 83-202 (321)
294 3b73_A PHIH1 repressor-like pr 97.4 0.00011 3.7E-09 55.2 4.0 64 46-116 15-80 (111)
295 2oyr_A UPF0341 protein YHIQ; a 97.4 4.8E-05 1.6E-09 66.4 2.1 71 195-267 84-176 (258)
296 3lkd_A Type I restriction-modi 97.4 0.00051 1.8E-08 66.5 9.1 99 197-295 221-359 (542)
297 3cvo_A Methyltransferase-like 97.3 0.00069 2.3E-08 56.6 8.1 89 196-294 29-154 (202)
298 3ll7_A Putative methyltransfer 97.2 0.00023 7.8E-09 66.2 4.0 63 197-261 93-169 (410)
299 2wk1_A NOVP; transferase, O-me 97.1 0.0012 4.1E-08 58.2 8.0 96 196-295 105-245 (282)
300 2zwa_A Leucine carboxyl methyl 97.1 0.0054 1.9E-07 61.4 13.5 149 197-349 107-309 (695)
301 1wg8_A Predicted S-adenosylmet 97.1 0.00049 1.7E-08 60.2 4.8 65 184-251 10-77 (285)
302 1y0u_A Arsenical resistance op 97.0 0.00065 2.2E-08 49.6 4.0 58 43-110 30-87 (96)
303 2heo_A Z-DNA binding protein 1 97.0 0.00042 1.4E-08 46.9 2.8 54 46-106 12-66 (67)
304 1qbj_A Protein (double-strande 96.9 0.0011 3.8E-08 46.5 4.3 63 45-112 11-76 (81)
305 1qgp_A Protein (double strande 96.9 0.0006 2.1E-08 47.5 2.9 58 45-107 15-75 (77)
306 1ub9_A Hypothetical protein PH 96.8 0.00047 1.6E-08 50.5 2.3 70 39-112 11-83 (100)
307 3cuo_A Uncharacterized HTH-typ 96.8 0.00084 2.9E-08 49.1 3.4 62 44-109 24-85 (99)
308 3ech_A MEXR, multidrug resista 96.8 0.0042 1.4E-07 48.5 7.5 68 43-114 36-106 (142)
309 3pqk_A Biofilm growth-associat 96.8 0.0022 7.4E-08 47.3 5.5 72 23-108 11-82 (102)
310 3jth_A Transcription activator 96.6 0.0013 4.5E-08 48.1 3.5 60 44-108 23-82 (98)
311 1u2w_A CADC repressor, cadmium 96.6 0.0017 5.9E-08 49.6 4.2 62 43-108 41-102 (122)
312 1tbx_A ORF F-93, hypothetical 96.6 0.0013 4.6E-08 48.1 3.1 65 46-114 10-78 (99)
313 2htj_A P fimbrial regulatory p 96.5 0.0025 8.4E-08 44.8 4.2 44 47-94 3-46 (81)
314 3tka_A Ribosomal RNA small sub 96.5 0.0036 1.2E-07 56.1 6.1 67 184-251 45-115 (347)
315 3df8_A Possible HXLR family tr 96.4 0.0025 8.4E-08 47.9 3.9 76 24-114 16-94 (111)
316 1oyi_A Double-stranded RNA-bin 96.3 0.0024 8.1E-08 44.7 2.9 61 44-110 17-77 (82)
317 2oqg_A Possible transcriptiona 96.3 0.0021 7.2E-08 48.3 2.9 61 45-110 22-82 (114)
318 3k0l_A Repressor protein; heli 96.3 0.016 5.3E-07 46.4 8.1 66 45-114 47-115 (162)
319 1on2_A Transcriptional regulat 96.2 0.004 1.4E-07 48.8 4.4 54 54-114 18-71 (142)
320 3f6o_A Probable transcriptiona 96.2 0.002 7E-08 48.9 2.5 65 41-110 15-79 (118)
321 3nrv_A Putative transcriptiona 96.2 0.0053 1.8E-07 48.3 4.9 99 12-114 4-109 (148)
322 3g3z_A NMB1585, transcriptiona 96.2 0.0066 2.3E-07 47.5 5.5 67 44-114 31-100 (145)
323 3r24_A NSP16, 2'-O-methyl tran 96.2 0.0099 3.4E-07 51.9 6.8 92 196-294 108-217 (344)
324 3mq0_A Transcriptional repress 96.2 0.004 1.4E-07 54.8 4.5 57 47-110 33-90 (275)
325 3kp7_A Transcriptional regulat 96.2 0.028 9.6E-07 44.2 9.1 64 46-114 40-108 (151)
326 1xn7_A Hypothetical protein YH 96.2 0.0038 1.3E-07 43.4 3.4 43 49-95 7-49 (78)
327 3bdd_A Regulatory protein MARR 96.2 0.011 3.7E-07 45.9 6.5 65 45-113 32-99 (142)
328 2k02_A Ferrous iron transport 96.1 0.0035 1.2E-07 44.5 3.1 43 49-95 7-49 (87)
329 2qww_A Transcriptional regulat 96.1 0.028 9.5E-07 44.3 8.9 66 45-114 42-112 (154)
330 2wte_A CSA3; antiviral protein 96.1 0.0042 1.4E-07 53.5 4.2 64 45-114 153-216 (244)
331 2rdp_A Putative transcriptiona 96.1 0.016 5.6E-07 45.4 7.4 65 46-114 44-111 (150)
332 3bja_A Transcriptional regulat 96.0 0.0071 2.4E-07 46.8 4.8 66 45-114 34-102 (139)
333 2nyx_A Probable transcriptiona 96.0 0.023 8E-07 45.7 8.1 67 44-114 45-114 (168)
334 2jsc_A Transcriptional regulat 96.0 0.0042 1.5E-07 47.1 3.3 60 44-108 21-80 (118)
335 1r7j_A Conserved hypothetical 96.0 0.0063 2.2E-07 44.2 4.0 56 49-114 13-68 (95)
336 2hzt_A Putative HTH-type trans 96.0 0.0065 2.2E-07 45.1 4.2 74 26-113 5-82 (107)
337 1r1u_A CZRA, repressor protein 96.0 0.0044 1.5E-07 46.0 3.2 46 45-95 27-72 (106)
338 3cdh_A Transcriptional regulat 95.9 0.02 6.9E-07 45.2 7.3 66 45-114 44-112 (155)
339 3vyw_A MNMC2; tRNA wobble urid 95.9 0.022 7.6E-07 50.5 8.1 128 196-357 95-256 (308)
340 2kko_A Possible transcriptiona 95.9 0.002 6.9E-08 48.1 1.2 58 46-108 27-84 (108)
341 3f6v_A Possible transcriptiona 95.9 0.0041 1.4E-07 49.4 2.9 69 38-111 52-120 (151)
342 1jgs_A Multiple antibiotic res 95.9 0.0066 2.2E-07 47.0 4.0 65 46-114 36-103 (138)
343 2gxg_A 146AA long hypothetical 95.9 0.023 7.8E-07 44.3 7.2 66 44-114 37-105 (146)
344 4a5n_A Uncharacterized HTH-typ 95.8 0.0077 2.6E-07 46.5 4.1 79 22-114 13-95 (131)
345 3bpv_A Transcriptional regulat 95.8 0.0071 2.4E-07 46.8 4.0 66 45-114 30-98 (138)
346 2hr3_A Probable transcriptiona 95.8 0.01 3.4E-07 46.5 4.7 68 43-114 34-105 (147)
347 1i4w_A Mitochondrial replicati 95.8 0.012 4.1E-07 53.5 5.8 54 198-251 59-116 (353)
348 2nnn_A Probable transcriptiona 95.8 0.0066 2.3E-07 47.1 3.5 66 45-114 39-107 (140)
349 1z7u_A Hypothetical protein EF 95.7 0.0084 2.9E-07 44.9 3.9 78 22-113 9-90 (112)
350 3hsr_A HTH-type transcriptiona 95.7 0.014 4.7E-07 45.4 5.3 66 45-114 37-105 (140)
351 2fu4_A Ferric uptake regulatio 95.7 0.0068 2.3E-07 42.6 3.1 48 45-96 18-72 (83)
352 2jt1_A PEFI protein; solution 95.7 0.0064 2.2E-07 42.1 2.8 43 49-95 9-57 (77)
353 4fzv_A Putative methyltransfer 95.7 0.011 3.6E-07 54.1 5.1 104 195-298 146-288 (359)
354 3boq_A Transcriptional regulat 95.7 0.043 1.5E-06 43.5 8.2 66 45-114 48-117 (160)
355 1r1t_A Transcriptional repress 95.7 0.0074 2.5E-07 46.0 3.4 59 45-108 47-105 (122)
356 2fbh_A Transcriptional regulat 95.7 0.011 3.7E-07 46.2 4.5 65 46-114 39-107 (146)
357 4hbl_A Transcriptional regulat 95.7 0.019 6.6E-07 45.1 6.0 66 44-113 41-109 (149)
358 3f3x_A Transcriptional regulat 95.6 0.026 8.9E-07 44.0 6.7 66 44-114 37-105 (144)
359 2xrn_A HTH-type transcriptiona 95.6 0.0067 2.3E-07 52.2 3.3 60 47-112 9-69 (241)
360 1mkm_A ICLR transcriptional re 95.6 0.01 3.5E-07 51.4 4.4 58 46-110 10-68 (249)
361 3e6m_A MARR family transcripti 95.6 0.021 7.1E-07 45.6 6.0 65 46-114 55-122 (161)
362 3oop_A LIN2960 protein; protei 95.6 0.0078 2.7E-07 47.0 3.3 67 44-114 37-106 (143)
363 1lj9_A Transcriptional regulat 95.6 0.0098 3.4E-07 46.4 3.9 65 46-114 31-98 (144)
364 3r4k_A Transcriptional regulat 95.5 0.005 1.7E-07 53.8 2.3 58 47-110 9-67 (260)
365 2fsw_A PG_0823 protein; alpha- 95.5 0.0096 3.3E-07 44.2 3.6 78 22-113 12-93 (107)
366 1yyv_A Putative transcriptiona 95.5 0.012 4E-07 45.5 4.1 79 21-113 21-103 (131)
367 1s3j_A YUSO protein; structura 95.5 0.037 1.3E-06 43.6 7.2 65 46-114 39-106 (155)
368 2f2e_A PA1607; transcription f 95.5 0.014 4.8E-07 46.0 4.4 78 22-113 11-90 (146)
369 2a61_A Transcriptional regulat 95.4 0.01 3.5E-07 46.3 3.6 67 44-114 33-102 (145)
370 2fbi_A Probable transcriptiona 95.4 0.0072 2.5E-07 46.9 2.7 67 44-114 36-105 (142)
371 2bv6_A MGRA, HTH-type transcri 95.4 0.014 4.9E-07 45.3 4.4 67 44-114 37-106 (142)
372 2y75_A HTH-type transcriptiona 95.4 0.014 4.7E-07 44.9 4.2 47 57-108 25-71 (129)
373 3bj6_A Transcriptional regulat 95.4 0.064 2.2E-06 42.0 8.3 65 46-114 42-109 (152)
374 2eth_A Transcriptional regulat 95.4 0.015 5E-07 46.1 4.3 67 44-114 44-113 (154)
375 3lwf_A LIN1550 protein, putati 95.4 0.022 7.5E-07 45.6 5.3 61 39-107 28-88 (159)
376 3bro_A Transcriptional regulat 95.3 0.077 2.6E-06 40.9 8.4 64 46-113 36-104 (141)
377 3cjn_A Transcriptional regulat 95.3 0.012 4.1E-07 46.9 3.7 67 44-114 52-121 (162)
378 3tgn_A ADC operon repressor AD 95.3 0.016 5.3E-07 45.3 4.3 66 44-114 38-106 (146)
379 3s2w_A Transcriptional regulat 95.3 0.045 1.6E-06 43.4 7.0 65 46-114 52-119 (159)
380 1bja_A Transcription regulator 95.3 0.015 5.2E-07 41.8 3.6 61 46-114 18-79 (95)
381 2fa5_A Transcriptional regulat 95.2 0.016 5.5E-07 46.2 4.3 66 45-114 50-118 (162)
382 2h09_A Transcriptional regulat 95.2 0.025 8.6E-07 44.8 5.4 55 52-113 48-102 (155)
383 1sfx_A Conserved hypothetical 95.2 0.011 3.9E-07 43.4 3.1 47 45-95 21-67 (109)
384 3eco_A MEPR; mutlidrug efflux 95.2 0.057 2E-06 41.6 7.2 66 45-114 32-102 (139)
385 2pg4_A Uncharacterized protein 95.2 0.019 6.3E-07 41.5 4.0 62 49-114 20-84 (95)
386 3ufb_A Type I restriction-modi 95.2 0.071 2.4E-06 51.4 9.2 109 186-295 207-363 (530)
387 2x4h_A Hypothetical protein SS 95.1 0.02 6.9E-07 44.4 4.4 50 56-113 29-78 (139)
388 2lkp_A Transcriptional regulat 95.1 0.024 8.3E-07 42.7 4.6 47 44-95 32-78 (119)
389 1ylf_A RRF2 family protein; st 95.0 0.02 6.8E-07 45.3 4.2 61 39-109 15-75 (149)
390 3jw4_A Transcriptional regulat 95.0 0.038 1.3E-06 43.3 5.7 65 46-114 43-112 (148)
391 3k69_A Putative transcription 95.0 0.036 1.2E-06 44.5 5.5 62 39-109 13-74 (162)
392 2pex_A Transcriptional regulat 95.0 0.019 6.6E-07 45.2 3.9 67 45-115 48-117 (153)
393 2o0y_A Transcriptional regulat 94.9 0.015 5.1E-07 50.7 3.4 57 47-110 26-83 (260)
394 3fm5_A Transcriptional regulat 94.9 0.046 1.6E-06 42.8 6.1 67 44-114 39-109 (150)
395 1z91_A Organic hydroperoxide r 94.9 0.01 3.4E-07 46.5 2.1 68 44-115 40-110 (147)
396 2zkz_A Transcriptional repress 94.9 0.012 4E-07 43.0 2.3 60 45-109 28-87 (99)
397 3t8r_A Staphylococcus aureus C 94.8 0.031 1.1E-06 43.8 4.6 47 57-108 27-73 (143)
398 3deu_A Transcriptional regulat 94.8 0.023 8E-07 45.6 4.0 66 45-114 54-123 (166)
399 2frh_A SARA, staphylococcal ac 94.8 0.012 4E-07 45.1 2.0 65 46-114 39-108 (127)
400 2g7u_A Transcriptional regulat 94.7 0.02 6.8E-07 49.8 3.6 59 47-113 17-76 (257)
401 2qvo_A Uncharacterized protein 94.6 0.015 5.1E-07 42.1 2.2 52 59-114 31-82 (95)
402 3hrs_A Metalloregulator SCAR; 94.5 0.03 1E-06 47.2 4.2 53 55-114 17-69 (214)
403 2zig_A TTHA0409, putative modi 94.4 0.032 1.1E-06 49.5 4.4 51 184-238 224-275 (297)
404 3nqo_A MARR-family transcripti 94.4 0.13 4.4E-06 42.2 7.7 68 43-114 40-112 (189)
405 3u2r_A Regulatory protein MARR 94.2 0.09 3.1E-06 42.1 6.3 66 45-114 47-117 (168)
406 2ia2_A Putative transcriptiona 94.2 0.022 7.4E-07 49.8 2.8 56 46-109 23-79 (265)
407 1p6r_A Penicillinase repressor 94.1 0.024 8.2E-07 39.6 2.3 51 45-95 10-60 (82)
408 2obp_A Putative DNA-binding pr 94.1 0.06 2.1E-06 38.9 4.4 53 57-113 35-88 (96)
409 4aik_A Transcriptional regulat 93.7 0.093 3.2E-06 41.4 5.4 65 46-114 33-101 (151)
410 4b8x_A SCO5413, possible MARR- 93.7 0.054 1.9E-06 42.5 3.9 62 49-114 40-106 (147)
411 2cfx_A HTH-type transcriptiona 93.6 0.06 2.1E-06 42.1 4.0 45 46-94 7-51 (144)
412 2w25_A Probable transcriptiona 93.5 0.064 2.2E-06 42.2 4.0 46 45-94 8-53 (150)
413 2fbk_A Transcriptional regulat 93.5 0.033 1.1E-06 45.3 2.4 66 45-114 70-141 (181)
414 3r0a_A Putative transcriptiona 93.5 0.043 1.5E-06 41.8 2.9 46 46-95 28-75 (123)
415 2k4b_A Transcriptional regulat 93.4 0.025 8.5E-07 41.3 1.3 50 46-95 37-86 (99)
416 2fxa_A Protease production reg 93.3 0.038 1.3E-06 46.2 2.5 65 46-114 50-117 (207)
417 2pn6_A ST1022, 150AA long hypo 93.2 0.056 1.9E-06 42.5 3.3 46 45-94 4-49 (150)
418 1q1h_A TFE, transcription fact 93.2 0.057 1.9E-06 40.0 3.1 46 46-95 20-66 (110)
419 2p4w_A Transcriptional regulat 93.2 0.084 2.9E-06 43.9 4.5 66 40-110 11-81 (202)
420 2lnb_A Z-DNA-binding protein 1 93.2 0.063 2.1E-06 36.4 2.9 54 46-106 21-75 (80)
421 2p5v_A Transcriptional regulat 93.2 0.076 2.6E-06 42.4 4.0 46 45-94 11-56 (162)
422 1xd7_A YWNA; structural genomi 93.1 0.069 2.4E-06 41.9 3.6 60 38-109 9-68 (145)
423 1okr_A MECI, methicillin resis 93.0 0.031 1E-06 42.3 1.3 62 46-113 12-80 (123)
424 1sfu_A 34L protein; protein/Z- 92.9 0.091 3.1E-06 35.7 3.4 53 49-106 20-72 (75)
425 2esh_A Conserved hypothetical 92.8 0.32 1.1E-05 36.5 6.8 69 41-114 10-91 (118)
426 2ia0_A Putative HTH-type trans 92.6 0.1 3.5E-06 42.2 4.0 46 45-94 18-63 (171)
427 3u1d_A Uncharacterized protein 92.6 0.13 4.4E-06 40.4 4.4 67 45-115 30-107 (151)
428 2cg4_A Regulatory protein ASNC 92.5 0.086 3E-06 41.6 3.4 45 46-94 10-54 (152)
429 2dbb_A Putative HTH-type trans 92.4 0.091 3.1E-06 41.3 3.5 46 45-94 10-55 (151)
430 2cyy_A Putative HTH-type trans 92.3 0.078 2.7E-06 41.8 2.9 45 46-94 9-53 (151)
431 3i4p_A Transcriptional regulat 92.2 0.092 3.1E-06 42.0 3.3 46 45-94 4-49 (162)
432 2e1c_A Putative HTH-type trans 92.2 0.099 3.4E-06 42.2 3.5 46 45-94 28-73 (171)
433 3cta_A Riboflavin kinase; stru 92.1 0.11 3.7E-06 44.2 3.8 54 57-114 26-79 (230)
434 1i1g_A Transcriptional regulat 92.1 0.085 2.9E-06 40.9 2.9 45 46-94 6-50 (141)
435 1ku9_A Hypothetical protein MJ 92.0 0.37 1.3E-05 37.3 6.6 43 49-95 31-74 (152)
436 2d1h_A ST1889, 109AA long hypo 92.0 0.1 3.5E-06 38.1 3.1 36 56-95 34-69 (109)
437 1uly_A Hypothetical protein PH 91.3 0.19 6.5E-06 41.4 4.3 49 42-95 18-66 (192)
438 2vn2_A DNAD, chromosome replic 91.3 0.13 4.6E-06 39.2 3.1 34 58-95 51-84 (128)
439 4esf_A PADR-like transcription 91.1 0.39 1.3E-05 36.0 5.5 71 39-114 6-87 (117)
440 2dk5_A DNA-directed RNA polyme 90.8 0.13 4.5E-06 36.7 2.5 46 46-95 22-69 (91)
441 3k2z_A LEXA repressor; winged 90.7 0.17 5.8E-06 41.8 3.5 38 53-94 18-56 (196)
442 3ggo_A Prephenate dehydrogenas 90.6 1.1 3.7E-05 39.9 8.9 88 199-291 34-125 (314)
443 3l7w_A Putative uncharacterize 90.2 0.07 2.4E-06 39.5 0.6 68 42-114 7-82 (108)
444 2qlz_A Transcription factor PF 90.1 0.054 1.9E-06 46.1 -0.1 66 40-110 8-79 (232)
445 3f8b_A Transcriptional regulat 90.0 0.49 1.7E-05 35.3 5.2 72 38-114 6-90 (116)
446 1p4x_A Staphylococcal accessor 89.9 0.17 5.7E-06 43.6 2.9 66 45-114 159-229 (250)
447 3elk_A Putative transcriptiona 89.8 0.26 8.7E-06 37.0 3.5 72 38-114 8-90 (117)
448 2g9w_A Conserved hypothetical 89.8 0.26 8.7E-06 38.1 3.6 47 45-95 10-61 (138)
449 1v4r_A Transcriptional repress 89.6 0.26 8.8E-06 35.9 3.3 51 41-95 16-68 (102)
450 2oo3_A Protein involved in cat 89.3 0.43 1.5E-05 41.6 4.9 97 198-298 92-202 (283)
451 1fx7_A Iron-dependent represso 89.1 0.26 8.8E-06 41.8 3.4 48 60-114 26-73 (230)
452 2qlz_A Transcription factor PF 88.9 0.64 2.2E-05 39.4 5.7 53 47-107 168-220 (232)
453 2g1u_A Hypothetical protein TM 88.9 6.8 0.00023 30.3 11.8 92 195-292 16-116 (155)
454 1hsj_A Fusion protein consisti 88.9 0.25 8.7E-06 46.8 3.6 65 45-113 405-474 (487)
455 3eyi_A Z-DNA-binding protein 1 88.7 0.64 2.2E-05 30.7 4.2 47 46-95 12-58 (72)
456 4fx0_A Probable transcriptiona 88.7 0.24 8.1E-06 38.8 2.7 63 47-114 36-106 (148)
457 2o03_A Probable zinc uptake re 88.6 0.38 1.3E-05 36.8 3.8 60 42-105 9-75 (131)
458 1sd4_A Penicillinase repressor 88.6 0.19 6.5E-06 37.9 2.0 51 45-95 11-61 (126)
459 2qq9_A Diphtheria toxin repres 88.3 0.57 1.9E-05 39.5 5.0 50 58-114 24-73 (226)
460 1xma_A Predicted transcription 88.2 0.31 1E-05 38.1 3.0 69 41-114 38-119 (145)
461 2fe3_A Peroxide operon regulat 88.1 0.6 2.1E-05 36.4 4.7 60 43-106 21-87 (145)
462 3hhh_A Transcriptional regulat 87.9 0.59 2E-05 34.9 4.4 71 39-114 8-89 (116)
463 3i71_A Ethanolamine utilizatio 87.5 0.78 2.7E-05 29.0 3.9 43 58-108 18-60 (68)
464 4g6q_A Putative uncharacterize 87.5 0.22 7.6E-06 40.6 1.9 62 44-110 23-90 (182)
465 1g60_A Adenine-specific methyl 87.4 0.56 1.9E-05 40.5 4.5 50 184-237 201-251 (260)
466 2vxz_A Pyrsv_GP04; viral prote 87.1 0.44 1.5E-05 36.8 3.1 55 46-105 13-67 (165)
467 1yg2_A Gene activator APHA; vi 86.9 0.66 2.2E-05 37.6 4.4 64 45-113 3-79 (179)
468 3iht_A S-adenosyl-L-methionine 86.8 2.5 8.7E-05 33.1 7.3 121 170-296 16-149 (174)
469 2p8t_A Hypothetical protein PH 86.8 0.54 1.9E-05 38.7 3.8 49 57-113 29-77 (200)
470 1zkd_A DUF185; NESG, RPR58, st 86.7 0.97 3.3E-05 41.4 5.9 35 195-229 78-119 (387)
471 2b0l_A GTP-sensing transcripti 86.7 0.33 1.1E-05 35.4 2.3 44 48-95 32-76 (102)
472 1bia_A BIRA bifunctional prote 86.4 0.52 1.8E-05 42.2 3.8 56 46-107 7-62 (321)
473 2o0m_A Transcriptional regulat 86.3 0.14 4.7E-06 46.5 0.0 63 45-115 21-83 (345)
474 3b1f_A Putative prephenate deh 86.2 3.1 0.0001 36.2 8.8 88 199-291 7-98 (290)
475 2v79_A DNA replication protein 86.1 0.35 1.2E-05 37.3 2.3 34 58-95 51-84 (135)
476 2hoe_A N-acetylglucosamine kin 86.1 0.43 1.5E-05 43.8 3.2 56 36-96 12-67 (380)
477 1j5y_A Transcriptional regulat 85.9 0.56 1.9E-05 38.3 3.5 59 42-108 19-79 (187)
478 3tos_A CALS11; methyltransfera 85.2 0.64 2.2E-05 40.1 3.7 95 197-295 69-218 (257)
479 3mag_A VP39; methylated adenin 85.0 4.5 0.00015 35.2 8.7 79 197-298 60-142 (307)
480 3mwm_A ZUR, putative metal upt 84.5 0.94 3.2E-05 35.0 4.0 65 42-106 12-79 (139)
481 1p4x_A Staphylococcal accessor 84.4 0.67 2.3E-05 39.8 3.5 66 45-114 35-105 (250)
482 3fwz_A Inner membrane protein 84.3 2.4 8.3E-05 32.4 6.4 87 199-292 8-103 (140)
483 1mzb_A Ferric uptake regulatio 83.9 0.87 3E-05 35.0 3.6 60 43-106 17-84 (136)
484 1jhg_A Trp operon repressor; c 83.7 1 3.5E-05 32.6 3.6 40 43-87 44-83 (101)
485 2xig_A Ferric uptake regulatio 83.5 1.1 3.8E-05 35.1 4.1 60 42-105 25-91 (150)
486 1pl8_A Human sorbitol dehydrog 83.3 2.7 9.2E-05 37.9 7.2 93 195-295 169-274 (356)
487 3ps9_A TRNA 5-methylaminomethy 83.2 1.5 5.3E-05 43.3 6.0 95 197-291 66-216 (676)
488 2xvc_A ESCRT-III, SSO0910; cel 83.2 0.72 2.5E-05 29.2 2.2 44 47-94 13-57 (59)
489 1f8f_A Benzyl alcohol dehydrog 83.1 2.4 8.1E-05 38.5 6.8 94 195-296 188-291 (371)
490 3ri2_A Transcriptional regulat 83.1 1.7 5.9E-05 32.7 4.9 73 36-114 13-94 (123)
491 2pjp_A Selenocysteine-specific 83.1 0.75 2.6E-05 34.6 2.8 54 45-106 8-61 (121)
492 3cuq_B Vacuolar protein-sortin 82.5 1.5 5.1E-05 36.7 4.7 37 56-96 166-202 (218)
493 2py6_A Methyltransferase FKBM; 82.5 1.8 6.1E-05 40.1 5.8 40 196-235 225-267 (409)
494 2c7p_A Modification methylase 82.3 5 0.00017 35.8 8.5 122 198-346 11-150 (327)
495 2g5c_A Prephenate dehydrogenas 82.3 5.5 0.00019 34.3 8.6 88 200-292 3-94 (281)
496 4esb_A Transcriptional regulat 82.1 0.84 2.9E-05 34.0 2.8 65 45-114 10-85 (115)
497 3l4g_A Phenylalanyl-tRNA synth 82.0 0.27 9.3E-06 46.6 0.0 70 45-119 6-77 (508)
498 2p5k_A Arginine repressor; DNA 81.8 1.4 4.9E-05 28.4 3.6 36 50-92 11-51 (64)
499 1z05_A Transcriptional regulat 81.7 1.2 4E-05 41.5 4.3 51 41-95 36-86 (429)
500 2dph_A Formaldehyde dismutase; 81.6 3.9 0.00013 37.5 7.7 101 195-296 183-301 (398)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=4.2e-55 Score=407.02 Aligned_cols=330 Identities=25% Similarity=0.411 Sum_probs=293.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
+.+.+..|++++.||+.+++|++|++|||||.|.+. ||+|+++||+++|+ +++.++|||++|++.|++.+.....
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~~ 80 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRGG 80 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccCc
Confidence 347788899999999999999999999999999874 58999999999999 9999999999999999998643234
Q ss_pred CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccC---CChhhhhccCccHHHHHHHH
Q 018145 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHG---MHIFEYASGNPRFNETYHEA 176 (360)
Q Consensus 100 ~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~ 176 (360)
.+.|++|+.++.++.+.++.++++++.+. .+..+..|.+|.++++++.+++...+| .++|+++.++++....|+++
T Consensus 81 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~a 159 (353)
T 4a6d_A 81 KAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQA 159 (353)
T ss_dssp EEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHH
T ss_pred cceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHH
Confidence 56899999999888887777888888764 456788999999999999988888777 46899999999999999999
Q ss_pred HhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC------CCCcEEEecCCC
Q 018145 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS------YAGVEHVGGNMF 250 (360)
Q Consensus 177 m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~v~~~~~d~~ 250 (360)
|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|++
T Consensus 160 M~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~ 238 (353)
T 4a6d_A 160 LQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFF 238 (353)
T ss_dssp HHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTT
T ss_pred HHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccc
Confidence 99988888888999888 88889999999999999999999999999999999999987754 278999999999
Q ss_pred C-CCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCH
Q 018145 251 E-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 329 (360)
Q Consensus 251 ~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 329 (360)
+ +.|.+|+|+++++||+|+|+++.++|++++++|+|||+|+|+|.+.+++...+ .....+++.|+... +|++||.
T Consensus 239 ~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-~g~ert~ 314 (353)
T 4a6d_A 239 KDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-EGQERTP 314 (353)
T ss_dssp TSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-SCCCCCH
T ss_pred cCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-CCcCCCH
Confidence 8 56666999999999999999999999999999999999999999987654433 23456788888765 8999999
Q ss_pred HHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 330 KEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+||+++|+++||+.+++.+.++..++|+++|
T Consensus 315 ~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 315 THYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp HHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred HHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 9999999999999999999998999999998
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=2.4e-54 Score=403.57 Aligned_cols=344 Identities=47% Similarity=0.866 Sum_probs=301.0
Q ss_pred hhHHhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC--CCCCHHHHHHHhCc-CCCCCcCcHHHHHHHHhcCccee
Q 018145 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GELSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLE 93 (360)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~--g~~t~~~la~~~~~-~~~~~~~~~~~~L~~L~~~g~l~ 93 (360)
...++.+.+..+++++.+++.+++|++|++|||||.|.+. +|+|++|||+++|+ ++|.++..++||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 4455778889999999999999999999999999999984 59999999999995 32222338999999999999999
Q ss_pred eccc--CC---CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCcc
Q 018145 94 CSVS--GG---ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPR 168 (360)
Q Consensus 94 ~~~~--~~---~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~ 168 (360)
+... .+ ++.|++|+.++.|+.+.++.+++.++.+...+.++..|.+|.+++++|.++|+..+|.++|+++..+++
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~ 172 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPR 172 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHH
Confidence 7411 01 478999999999888776678888887766788899999999999999899998999999999999999
Q ss_pred HHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecC
Q 018145 169 FNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 248 (360)
Q Consensus 169 ~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d 248 (360)
..+.|++.|..........+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|
T Consensus 173 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 252 (364)
T 3p9c_A 173 FNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGD 252 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCC
Confidence 99999999998888777888888875677899999999999999999999999999999999999999988999999999
Q ss_pred CCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCC
Q 018145 249 MFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 328 (360)
Q Consensus 249 ~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 328 (360)
+++++|.+|+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++.+...........+++.|+....+++.||
T Consensus 253 ~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt 332 (364)
T 3p9c_A 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERY 332 (364)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCB
T ss_pred cCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCC
Confidence 99877767999999999999999999999999999999999999999987654333222334567887775445899999
Q ss_pred HHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 329 KKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.++|.++|+++||+.+++.+..+..++||++|
T Consensus 333 ~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 333 EREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 99999999999999999999999999999998
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=2.9e-54 Score=403.74 Aligned_cols=357 Identities=51% Similarity=0.902 Sum_probs=300.1
Q ss_pred CCchhHHHHhhccCCchhHHhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC-C---CCCHHHHHHHhCcCCCCCc
Q 018145 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-G---ELSAPEIAAQLQAQNVKAP 76 (360)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g---~~t~~~la~~~~~~~~~~~ 76 (360)
|+|+++-+...+. ...++.+.+..+++++.+++.+++|++|++|||||.|.+. | |.|++|||+++|..+|.++
T Consensus 1 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~ 77 (368)
T 3reo_A 1 MGSTGNAEIQIIP---THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAP 77 (368)
T ss_dssp -------------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHH
T ss_pred CCCcccccccccC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcch
Confidence 7888877543122 4457788999999999999999999999999999999983 3 6999999999984233233
Q ss_pred CcHHHHHHHHhcCcceeeccc--CC---CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcc
Q 018145 77 MMLDRMLRLLVSHRVLECSVS--GG---ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPF 151 (360)
Q Consensus 77 ~~~~~~L~~L~~~g~l~~~~~--~~---~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 151 (360)
+.++||||+|++.|+|++... .+ ++.|++|+.++.|+.+.++.+++.++.+...+.++..|.+|.+++++|.++|
T Consensus 78 ~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~ 157 (368)
T 3reo_A 78 VMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPF 157 (368)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHH
T ss_pred hhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHH
Confidence 499999999999999997410 01 3689999999999888766788888877667888999999999999998999
Q ss_pred hhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchh
Q 018145 152 NRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH 231 (360)
Q Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~ 231 (360)
+..+|.++|+++..+++..+.|++.|..........+++.++++++..+|||||||+|.++..+++.+|+++++++|+|.
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 237 (368)
T 3reo_A 158 NKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPH 237 (368)
T ss_dssp HHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred HHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHH
Confidence 99999999999999999999999999988887778888888756778999999999999999999999999999999999
Q ss_pred HHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh
Q 018145 232 VVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS 311 (360)
Q Consensus 232 ~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~ 311 (360)
+++.+++.++|+++.+|+++++|.+|+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++.+..........
T Consensus 238 ~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~ 317 (368)
T 3reo_A 238 VIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVI 317 (368)
T ss_dssp HHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHH
T ss_pred HHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHH
Confidence 99999988999999999998777679999999999999999999999999999999999999998876544333333445
Q ss_pred hhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 312 LLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 312 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.+++.|+....+++.|+.++|.++|+++||+.+++.+..+..++||++|
T Consensus 318 ~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 318 HTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred hhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 6787777543488999999999999999999999999999999999987
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=6.4e-49 Score=365.31 Aligned_cols=323 Identities=25% Similarity=0.354 Sum_probs=284.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER 101 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~ 101 (360)
.+....+++++.+++.++++++|+++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|+|++ +++
T Consensus 20 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~----~~~ 90 (348)
T 3lst_A 20 LQSALALYEEAMGYTYAAALRAAAAVGVADHLVD-GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRE----SDG 90 (348)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEe----cCC
Confidence 4677789999999999999999999999999987 69999999999999 99999999999999999996 568
Q ss_pred eeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcc
Q 018145 102 LYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHS 181 (360)
Q Consensus 102 ~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~ 181 (360)
.|++|+.++.+..+. +.++++++.+...+..+..|.+|.+++++|.+++...+|.++|+++.++++....|.+.|....
T Consensus 91 ~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~ 169 (348)
T 3lst_A 91 RFALTDKGAALRSDS-PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVS 169 (348)
T ss_dssp EEEECTTTGGGSTTS-SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHhcCC-CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhh
Confidence 999999999886544 3467888776556667899999999999999999988998899999999999999999999888
Q ss_pred hhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-----CCCcEEEecCCCCCCCCC
Q 018145 182 TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGGNMFESVPEG 256 (360)
Q Consensus 182 ~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~d~~~~~~~~ 256 (360)
......+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.++..++. .++|+++.+|+++++|..
T Consensus 170 ~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~ 248 (348)
T 3lst_A 170 AAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHA 248 (348)
T ss_dssp HTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCC
T ss_pred hhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCC
Confidence 887888888887 88889999999999999999999999999999999877773321 157999999999877745
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++.... .....+++.|+.. .+++.++.++|.++|
T Consensus 249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~-~~~~~~t~~e~~~ll 323 (348)
T 3lst_A 249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAA-RTGQERTAAELEPLF 323 (348)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHT-TSCCCCBHHHHHHHH
T ss_pred cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhc-CCCcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988764222 1234567777665 488999999999999
Q ss_pred HHcCCceeeEEecCCceeEEEEeC
Q 018145 337 IAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 337 ~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+++||+++++.+..+..++||++|
T Consensus 324 ~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 324 TAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHCCCceEEEEECCCCcEEEEEEe
Confidence 999999999999778899999975
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=7e-49 Score=367.67 Aligned_cols=327 Identities=24% Similarity=0.442 Sum_probs=288.5
Q ss_pred hHHhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc
Q 018145 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (360)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~ 97 (360)
-..+.....++++++.+++.++++++|+++||||.|.+ ||.|++|||+++|+ +++.++|||++|++.|++++
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~--- 103 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDD--- 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEE---
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEE---
Confidence 33445777889999999999999999999999999996 69999999999999 99999999999999999997
Q ss_pred CCCce-eecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHH
Q 018145 98 GGERL-YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEA 176 (360)
Q Consensus 98 ~~~~~-y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (360)
.+++. |++|+.++.+..+ ++.++.+++.+...+..+..|.++.++++++.++|...+|.++|+++.++++....|...
T Consensus 104 ~~~~~~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 182 (369)
T 3gwz_A 104 LGHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRA 182 (369)
T ss_dssp CSSTTEEECCHHHHTTSCC-TTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred eCCCceEecCHHHHHHhcC-CchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHH
Confidence 45678 9999999987544 345788888776566678899999999999999999889988999999999999999999
Q ss_pred HhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-------CCCcEEEecCC
Q 018145 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNM 249 (360)
Q Consensus 177 m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~ 249 (360)
|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++ .++|+++.+|+
T Consensus 183 m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~ 261 (369)
T 3gwz_A 183 MGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDF 261 (369)
T ss_dssp HHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCC
Confidence 99888877788888887 77889999999999999999999999999999999888888764 26899999999
Q ss_pred CCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCC
Q 018145 250 FESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 328 (360)
Q Consensus 250 ~~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 328 (360)
++++|.. |+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++.... . ...+++.|+... +++.|+
T Consensus 262 ~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~-~g~~~t 335 (369)
T 3gwz_A 262 FETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVLV-GGAERS 335 (369)
T ss_dssp TTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHH-SCCCBC
T ss_pred CCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhhc-CCccCC
Confidence 9877754 99999999999999999999999999999999999999988764221 1 346677777654 899999
Q ss_pred HHHHHHHHHHcCCceeeEEe-cCCceeEEEEeC
Q 018145 329 KKEYTELAIAAGFKGINFAS-CVCNLYIMEFFK 360 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~k 360 (360)
.++|.++|+++||+++++.+ ..+..++||++|
T Consensus 336 ~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 336 ESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 99999999999999999999 578899999986
No 6
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=3.1e-48 Score=363.88 Aligned_cols=341 Identities=42% Similarity=0.741 Sum_probs=274.6
Q ss_pred HHhHHHHHHHH--HHHhhhHHHHHHHHHHhhChhhHhhhCC-C---CCHHHHHHHhCc--CCCCCcCcHHHHHHHHhcCc
Q 018145 19 EEEEESYSHAM--QLAMGVVLPMATQAAIQLGVFEIIAKAG-E---LSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHR 90 (360)
Q Consensus 19 ~~~~~~~~~~~--~~~~~~~~~~~l~~a~~lglfd~L~~~g-~---~t~~~la~~~~~--~~~~~~~~~~~~L~~L~~~g 90 (360)
++..+....++ +++.+++.+++|++|+++|||+.|.+.| | .|++|||+++|+ ++|.+++.++|||++|++.|
T Consensus 17 ~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~g 96 (372)
T 1fp1_D 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS 96 (372)
T ss_dssp --CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCC
Confidence 34446667777 9999999999999999999999999855 6 999999999998 23446789999999999999
Q ss_pred ceeecc---cCC--CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcC-CCcchhccCCChhhhhc
Q 018145 91 VLECSV---SGG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEG-GIPFNRVHGMHIFEYAS 164 (360)
Q Consensus 91 ~l~~~~---~~~--~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~~~ 164 (360)
+|++.. ..+ ++.|++|+.++.++.+.+..++++++.+...+.++..|.+|.++++++ .++|+..+|.++|+++.
T Consensus 97 ll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~ 176 (372)
T 1fp1_D 97 VLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMG 176 (372)
T ss_dssp SEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCS
T ss_pred ceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHH
Confidence 999741 001 369999999997765543246788887766677888999999999998 88898888989999999
Q ss_pred cCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEE
Q 018145 165 GNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEH 244 (360)
Q Consensus 165 ~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 244 (360)
.+++....|++.|..........+++.++.+++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.++|++
T Consensus 177 ~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~ 256 (372)
T 1fp1_D 177 KDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEH 256 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEE
T ss_pred hCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEE
Confidence 99999999999998887777778888886567789999999999999999999999999999999999999988888999
Q ss_pred EecCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC
Q 018145 245 VGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG 324 (360)
Q Consensus 245 ~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (360)
+.+|+++++|..|+|+++++||+|+++++.++|++++++|||||+|+|.|...+.....+........+++.|+... ++
T Consensus 257 ~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 335 (372)
T 1fp1_D 257 VGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GG 335 (372)
T ss_dssp EECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SC
T ss_pred EeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc-CC
Confidence 99999987776799999999999999988999999999999999999999988764332211113445676666543 78
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEecCCc-eeEEEEeC
Q 018145 325 RERTKKEYTELAIAAGFKGINFASCVCN-LYIMEFFK 360 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 360 (360)
+.|+.++|.++|+++||+++++.+...+ .+|||++|
T Consensus 336 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 336 RERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp CCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred ccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 8899999999999999999999984433 59999987
No 7
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=6.7e-49 Score=363.03 Aligned_cols=315 Identities=24% Similarity=0.377 Sum_probs=276.6
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 27 HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 27 ~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
.+++++.+++.++++++|+++||||.|.+ ||.|+++||+++|+ +++.++|||++|++.|++.+ .+++.|.+|
T Consensus 8 ~l~~~~~g~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~---~~~~~y~~t 79 (332)
T 3i53_A 8 IGLRALADLATPMAVRVAATLRVADHIAA-GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTR---DGQGVYGLT 79 (332)
T ss_dssp SCHHHHTCCHHHHHHHHHHHHTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---CTTSBEEEC
T ss_pred HHHHHHHhhHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEe---cCCCeEEcC
Confidence 46889999999999999999999999987 69999999999999 99999999999999999997 467899999
Q ss_pred hhchhhhcCCCCCChHHHhhccCChhHH-HhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhH
Q 018145 107 PVSKYFVSNKDGASLGHFMALPLDKVFM-ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAM 185 (360)
Q Consensus 107 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 185 (360)
+.++.+..+. +.++.+++.+...+..+ ..|.++.++++++.++|...+|.++|+++.++++....|...|........
T Consensus 80 ~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 158 (332)
T 3i53_A 80 EFGEQLRDDH-AAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDY 158 (332)
T ss_dssp TTGGGGSTTC-TTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHhcCC-chhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhH
Confidence 9999986544 45788888776444456 789999999999999998888988999999999999999999988777666
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCCCCC-Cc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVPE-GD 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~~~~-~D 257 (360)
..+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. ++|+++.+|+++++|. .|
T Consensus 159 ~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D 237 (332)
T 3i53_A 159 TGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAG 237 (332)
T ss_dssp TTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCS
T ss_pred HHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCc
Confidence 67777776 677899999999999999999999999999999999898887642 6899999999987774 49
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++. .+ ...+++.|+... +++.|+.++|.++|+
T Consensus 238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~~-~~~~~t~~e~~~ll~ 309 (332)
T 3i53_A 238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTYF-GGKERSLAELGELAA 309 (332)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHHH-SCCCCCHHHHHHHHH
T ss_pred EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhhC-CCCCCCHHHHHHHHH
Confidence 9999999999999989999999999999999999999987654 11 235677776654 889999999999999
Q ss_pred HcCCceeeEEecCCceeEEEEeC
Q 018145 338 AAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 338 ~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
++||+++++.+.++ .++||++|
T Consensus 310 ~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 310 QAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HTTEEEEEEEECSS-SEEEEEEE
T ss_pred HCCCEEEEEEECCC-cEEEEEee
Confidence 99999999999888 99999975
No 8
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=3.3e-48 Score=361.98 Aligned_cols=336 Identities=28% Similarity=0.482 Sum_probs=286.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc--
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-- 97 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-- 97 (360)
..+....+++++.+++.+++|++|+++|||+.|.+. ||.|++|||+++|+ +|.+++.++|||++|++.|+|.+...
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~~ 85 (358)
T 1zg3_A 7 LYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVKG 85 (358)
T ss_dssp CTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEECC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEecccc
Confidence 335556788999999999999999999999999974 49999999999999 45457899999999999999997300
Q ss_pred CC-----CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcC--CCcchhccCCChhhhhccCccHH
Q 018145 98 GG-----ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEG--GIPFNRVHGMHIFEYASGNPRFN 170 (360)
Q Consensus 98 ~~-----~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~~~~~~~~~ 170 (360)
.+ ++.|++|+.++.++.+.+ .++++++.+...+.++..|.+|.++++++ .++|+..+|.++|+++..+|+..
T Consensus 86 ~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~ 164 (358)
T 1zg3_A 86 KEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESS 164 (358)
T ss_dssp SSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHH
T ss_pred cccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhh
Confidence 02 479999999997775543 57888887766677889999999999998 67888888889999999999999
Q ss_pred H--HHHHHHhhcchhhHHHHHhhcc-cCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEec
Q 018145 171 E--TYHEAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGG 247 (360)
Q Consensus 171 ~--~~~~~m~~~~~~~~~~i~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 247 (360)
. .|+..|........ .+++.++ .+++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.++|+++.+
T Consensus 165 ~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 243 (358)
T 1zg3_A 165 TLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 243 (358)
T ss_dssp HHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEEC
T ss_pred hHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeC
Confidence 9 99999988776665 7777773 256778999999999999999999999999999999999999988778999999
Q ss_pred CCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCC---CcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC
Q 018145 248 NMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPG---NGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG 324 (360)
Q Consensus 248 d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~Lkp---gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (360)
|+++++|..|+|+++++||+|+++++.++|++++++||| ||+|+|.|...++....+........+++.|+... ++
T Consensus 244 d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g 322 (358)
T 1zg3_A 244 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF-LG 322 (358)
T ss_dssp CTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH-SC
T ss_pred ccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC-CC
Confidence 999877767999999999999999899999999999999 99999999988764332111233456777776644 78
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 325 RERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+.|+.++|.++|+++||+.+++.+.++..++||++|
T Consensus 323 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 323 KERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp CCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 899999999999999999999999888889999986
No 9
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=5.3e-48 Score=359.74 Aligned_cols=336 Identities=28% Similarity=0.492 Sum_probs=287.2
Q ss_pred HHhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc
Q 018145 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (360)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~ 97 (360)
++..+....+++++.+++.+++|++++++|||+.|.+. ||.|+++||+++|+ +|.+++.++|||++|++.|+|++..
T Consensus 11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~- 88 (352)
T 1fp2_A 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT- 88 (352)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEec-
Confidence 44566778899999999999999999999999999874 49999999999999 4444779999999999999999731
Q ss_pred CCCceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHh-cCCCcchhccCCChhhhhccCccHHHHHHHH
Q 018145 98 GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVM-EGGIPFNRVHGMHIFEYASGNPRFNETYHEA 176 (360)
Q Consensus 98 ~~~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (360)
.+++.|++|+.++.++.+.+ .++++++.+...+.++..|.+|.++++ +|.++|...+|.++|+++.++++....|.+.
T Consensus 89 ~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 167 (352)
T 1fp2_A 89 KEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDA 167 (352)
T ss_dssp SSSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred CCCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHH
Confidence 03689999999997775543 578888877656778889999999999 8888898888989999999999999999999
Q ss_pred HhhcchhhHHHHHhhcc-cCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCCC
Q 018145 177 MFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPE 255 (360)
Q Consensus 177 m~~~~~~~~~~i~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~ 255 (360)
|.......... ++.++ .+++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.++++++.+|+++++|.
T Consensus 168 m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~ 246 (352)
T 1fp2_A 168 MASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPN 246 (352)
T ss_dssp HHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCC
T ss_pred HHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCC
Confidence 99887766566 67672 26778999999999999999999999999999999999999998877899999999887776
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCC---CcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPG---NGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~Lkp---gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
.|+|++++++|+|+++++.++|++++++||| ||+|+|.|...++....+........+++.|+. . +++.|+.++|
T Consensus 247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~ 324 (352)
T 1fp2_A 247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEW 324 (352)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHH
T ss_pred ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHH
Confidence 7999999999999999888999999999999 999999999886543221111233456666665 3 5888999999
Q ss_pred HHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 333 TELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.++|+++||+.+++.+.++..++||++|
T Consensus 325 ~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 325 KKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 9999999999999999878889999986
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.4e-47 Score=352.93 Aligned_cols=319 Identities=25% Similarity=0.379 Sum_probs=279.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCce
Q 018145 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (360)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~ 102 (360)
.+...+++++.+++.++++++++++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|++.+ .+++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~-~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~---~~~~~ 78 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQG---DTRDG 78 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---ETTTE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEe---cCCCe
Confidence 466789999999999999999999999999987 69999999999999 99999999999999999997 35689
Q ss_pred eecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcch
Q 018145 103 YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHST 182 (360)
Q Consensus 103 y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~ 182 (360)
|++|+.++.+. + ++.++++++.+...+.+ ..|.+|.++++++.++|+..+|.++|+++.++++....|++.| ....
T Consensus 79 y~~t~~s~~l~-~-~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~ 154 (334)
T 2ip2_A 79 YANTPTSHLLR-D-VEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASN 154 (334)
T ss_dssp EEECHHHHTTS-S-STTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGH
T ss_pred EecCHHHHHHh-C-CCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHH
Confidence 99999998777 3 33467888877655544 8899999999999999988889899999999999999999999 8777
Q ss_pred hhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCCCCC
Q 018145 183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVPE 255 (360)
Q Consensus 183 ~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~~~~ 255 (360)
.....+++.++ +++ .+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. ++|+++.+|+++++|.
T Consensus 155 ~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 232 (334)
T 2ip2_A 155 LAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPS 232 (334)
T ss_dssp HHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCS
T ss_pred HHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCC
Confidence 77788888887 677 99999999999999999999999999999998888877652 5799999999987776
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 256 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
. |+|++.+++|+|+++++.++|++++++|||||+|++.|...++... + .....+++.|+... +++.|+.++|.+
T Consensus 233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~---~~~~~~~~~~~~~~-~~~~~t~~e~~~ 307 (334)
T 2ip2_A 233 NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP-S---PMSVLWDVHLFMAC-AGRHRTTEEVVD 307 (334)
T ss_dssp SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC-C---HHHHHHHHHHHHHH-SCCCCBHHHHHH
T ss_pred CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-c---chhHHhhhHhHhhC-CCcCCCHHHHHH
Confidence 5 9999999999999999999999999999999999999998765322 1 23345677676554 788999999999
Q ss_pred HHHHcCCceeeEEecCCceeEEEEeC
Q 018145 335 LAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+++++||+++++.+.++..++|+++|
T Consensus 308 ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 308 LLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999888899999986
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=3.8e-45 Score=341.57 Aligned_cols=323 Identities=18% Similarity=0.259 Sum_probs=260.1
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
..+....+++++.+++.++++++++++||||.|.+ +||.|++|||+++|+ +++.++|||++|++.|+|++ +
T Consensus 12 ~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~----~ 83 (363)
T 3dp7_A 12 AAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILL----E 83 (363)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE----E
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEe----c
Confidence 34677889999999999999999999999999998 469999999999999 99999999999999999986 4
Q ss_pred CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccC--CChhhhhccCccHHH----HH
Q 018145 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHG--MHIFEYASGNPRFNE----TY 173 (360)
Q Consensus 100 ~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g--~~~~~~~~~~~~~~~----~~ 173 (360)
+++|++|+.++.++.+.+ ...++.+ ..+..+..|.+|.++++++.+++...+| .++|+++.++++... .|
T Consensus 84 ~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f 159 (363)
T 3dp7_A 84 EDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGF 159 (363)
T ss_dssp TTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHH
T ss_pred CCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHH
Confidence 789999999987776543 1222322 2356788999999999999888877788 689999999988665 36
Q ss_pred HHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEe
Q 018145 174 HEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVG 246 (360)
Q Consensus 174 ~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~ 246 (360)
+..|..... ..++..+. ..+..+|||||||+|.++..+++.+|+++++++|+|.+++.+++. ++|+++.
T Consensus 160 ~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 235 (363)
T 3dp7_A 160 DHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHG 235 (363)
T ss_dssp HHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEE
T ss_pred HHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEE
Confidence 666654332 23444443 356789999999999999999999999999999999888877642 4799999
Q ss_pred cCCCCC---CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch-hhhhhhhhhHHHhhhc
Q 018145 247 GNMFES---VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS-AARETSLLDVLLMTRD 321 (360)
Q Consensus 247 ~d~~~~---~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 321 (360)
+|++++ +|.. |+|++++++|+|+++++.++|++++++|||||+|+|.|.+.+....... ........++.++. .
T Consensus 236 ~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 314 (363)
T 3dp7_A 236 ANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMA-N 314 (363)
T ss_dssp CCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSS-C
T ss_pred ccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhh-C
Confidence 999984 6644 9999999999999999999999999999999999999988866422110 00111222333332 2
Q ss_pred CCCccCCHHHHHHHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 322 GGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 322 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
.+++.|+.++|.++|+++||+++++.+.. .+.++|+++|
T Consensus 315 ~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 315 GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 36788999999999999999999998765 4588999875
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=1.5e-44 Score=339.29 Aligned_cols=325 Identities=23% Similarity=0.381 Sum_probs=276.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
.+..+..+++++.+++.++++++++++|||+.|.. ||.|++|||+++|+ +++.++|||++|++.|++++ ..+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~---~~~ 84 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEG---GEK 84 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---CCC
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEE---eCC
Confidence 45567789999999999999999999999999965 69999999999999 99999999999999999997 355
Q ss_pred c--eeecchhchhhhcCCCCCChHHHhhccCChhHH-HhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHH
Q 018145 101 R--LYALNPVSKYFVSNKDGASLGHFMALPLDKVFM-ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAM 177 (360)
Q Consensus 101 ~--~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 177 (360)
+ .|.+|+.++.+..+. +.+++.++.+...+..+ ..|.++.+.++++.+++...+|.++|+++..+++....|.+.|
T Consensus 85 ~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~ 163 (374)
T 1qzz_A 85 QGRPLRPTRLGMLLADGH-PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALM 163 (374)
T ss_dssp -CCCCEECTTGGGGSTTC-TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTC
T ss_pred CCeEEEEChHHHhhcCCC-cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHH
Confidence 6 899999998776554 35788888776444566 8899999999999888888889899999999999999999999
Q ss_pred hhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCC
Q 018145 178 FNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMF 250 (360)
Q Consensus 178 ~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~ 250 (360)
..........+++.++ ++++.+|||||||+|.++..+++.+|+++++++|++.+++.+++. ++|+++.+|++
T Consensus 164 ~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 242 (374)
T 1qzz_A 164 SCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFF 242 (374)
T ss_dssp GGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCC
Confidence 8777766778888877 777899999999999999999999999999999998888877642 47999999998
Q ss_pred CCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee--ecCCCCCCchhhhhhhhhhHHHhhhcCCCccC
Q 018145 251 ESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS--IVPEIPEVSSAARETSLLDVLLMTRDGGGRER 327 (360)
Q Consensus 251 ~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (360)
+++|.. |+|++++++|+|+++++.++|++++++|||||+++|.|. +.++... ......+++.++... ++..+
T Consensus 243 ~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~ 317 (374)
T 1qzz_A 243 KPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDLRMLTFM-GGRVR 317 (374)
T ss_dssp SCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHHH-SCCCC
T ss_pred CcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcchHHHHhC-CCcCC
Confidence 877765 999999999999998888999999999999999999998 7654311 123345666666554 78899
Q ss_pred CHHHHHHHHHHcCCceeeEEecCCce-----eEEEEeC
Q 018145 328 TKKEYTELAIAAGFKGINFASCVCNL-----YIMEFFK 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~k 360 (360)
+.++|.++|+++||+++++.+.++.. ++|+++|
T Consensus 318 ~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 318 TRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 99999999999999999999888776 8999875
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=7e-44 Score=333.08 Aligned_cols=323 Identities=23% Similarity=0.382 Sum_probs=277.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCce
Q 018145 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (360)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~ 102 (360)
.....+++++.+++.+++|.++.++|||+.|.. ||.|+++||+++|+ +++.++|+|++|++.|+|.+ ..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~---~~~g~ 89 (360)
T 1tw3_A 18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEE---DAPGE 89 (360)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---EETTE
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEe---cCCCe
Confidence 446778999999999999999999999999975 69999999999999 99999999999999999997 35679
Q ss_pred eecchhchhhhcCCCCCChHHHhhccCChh-HHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcc
Q 018145 103 YALNPVSKYFVSNKDGASLGHFMALPLDKV-FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHS 181 (360)
Q Consensus 103 y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~ 181 (360)
|++|+.++.+..+. +.+++.++.+...+. .+..|.++.+.++++.+++...+|.++|+++..+++....|...|....
T Consensus 90 y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~ 168 (360)
T 1tw3_A 90 FVPTEVGELLADDH-PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQ 168 (360)
T ss_dssp EEECTTGGGGSTTS-TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTT
T ss_pred EEeCHHHHHHhcCC-chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHH
Confidence 99999988776554 457888887754333 5778999999999998888888888999999999999999999998877
Q ss_pred hhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCCCC
Q 018145 182 TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVP 254 (360)
Q Consensus 182 ~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~~~ 254 (360)
......+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.++++ ++++++.+|+++++|
T Consensus 169 ~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 247 (360)
T 1tw3_A 169 DVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP 247 (360)
T ss_dssp TTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred HHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC
Confidence 777778888887 777899999999999999999999999999999998888877542 489999999998777
Q ss_pred CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee-cCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 255 EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI-VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 255 ~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
.. |+|++.+++|+|+++++.++|++++++|||||++++.|.. .++.... .....+++.++... ++..++.++|
T Consensus 248 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~~e~ 322 (360)
T 1tw3_A 248 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-GGALRTREKW 322 (360)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-SCCCCBHHHH
T ss_pred CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-CCcCCCHHHH
Confidence 65 9999999999999988899999999999999999999988 5543211 12335566665544 7889999999
Q ss_pred HHHHHHcCCceeeEEecCCc-----eeEEEEeC
Q 018145 333 TELAIAAGFKGINFASCVCN-----LYIMEFFK 360 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~~-----~~vi~~~k 360 (360)
.++|+++||+++++.+.++. .++|+++|
T Consensus 323 ~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 323 DGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 99999999999999887765 78999875
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-43 Score=327.05 Aligned_cols=315 Identities=19% Similarity=0.235 Sum_probs=270.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
..+++++.+++.++++++++++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|+|++ +++.|++
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~----~~~~y~~ 78 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTK----QAEGYRL 78 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT-SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEe----cCCEEec
Confidence 568899999999999999999999999997 69999999999999 99999999999999999985 5689999
Q ss_pred chhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhH
Q 018145 106 NPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAM 185 (360)
Q Consensus 106 t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 185 (360)
|+.++.++...++.++++++.+...+..+..|.+|.++++++.+++. + |+++..+++....|.+.|........
T Consensus 79 t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (335)
T 2r3s_A 79 TSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPA 152 (335)
T ss_dssp CHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHH
T ss_pred CHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhH
Confidence 99996555555455788888776555788899999999999876654 3 78888889999999999988887777
Q ss_pred HHHHhhcccC--CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCC
Q 018145 186 ERILEHYEGF--QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE 255 (360)
Q Consensus 186 ~~i~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~ 255 (360)
..+++.++ + .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|+++ +.+.
T Consensus 153 ~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 231 (335)
T 2r3s_A 153 QLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGN 231 (335)
T ss_dssp HHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS
T ss_pred HHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC
Confidence 78888887 6 77899999999999999999999999999999998888877653 469999999998 6666
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 256 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
. |+|++++++|+|+++++.++|++++++|+|||++++.|...++....+ .....+++.|+....+++.++.++|.+
T Consensus 232 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ 308 (335)
T 2r3s_A 232 DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYES 308 (335)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHH
Confidence 5 999999999999999999999999999999999999998876543222 223456666665544788999999999
Q ss_pred HHHHcCCceeeEEecCCceeEEEEe
Q 018145 335 LAIAAGFKGINFASCVCNLYIMEFF 359 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
+++++||+.+++.+.++..++|+++
T Consensus 309 ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 309 MFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHHHCCCCeeeEEECCCCceeEEEe
Confidence 9999999999999888777777664
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=4.5e-43 Score=327.36 Aligned_cols=311 Identities=20% Similarity=0.350 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 22 EESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 22 ~~~~~~~~~~~~-~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
.+...++++++. +++.++++++++++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|+|++ .+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~----~~ 98 (359)
T 1x19_A 28 LNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL----ED 98 (359)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ET
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEe----eC
Confidence 445567777775 8999999999999999999997 69999999999999 99999999999999999997 34
Q ss_pred ceeecchhchhhhcCCCC---CChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCcc---HHHHHH
Q 018145 101 RLYALNPVSKYFVSNKDG---ASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPR---FNETYH 174 (360)
Q Consensus 101 ~~y~~t~~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~ 174 (360)
+.|++|+.+..++.+.++ .++++++.+. .+..+..|.+|.++++++.+ |+++..+++ ....|.
T Consensus 99 ~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~~~~~f~ 167 (359)
T 1x19_A 99 GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTREDNLYF 167 (359)
T ss_dssp TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSHHHHHHH
T ss_pred CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhhHHHHHHH
Confidence 699999987666666555 5778877664 45678899999999998753 667778888 889999
Q ss_pred HHHhhcch-hhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEe
Q 018145 175 EAMFNHST-IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVG 246 (360)
Q Consensus 175 ~~m~~~~~-~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~ 246 (360)
..|..... .....+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|+|.+++.++++ ++++++.
T Consensus 168 ~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 246 (359)
T 1x19_A 168 EEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIA 246 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 99998887 77788888887 778899999999999999999999999999999998888877642 4699999
Q ss_pred cCCCC-CCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCc
Q 018145 247 GNMFE-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 325 (360)
Q Consensus 247 ~d~~~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (360)
+|+++ +++.+|+|++.+++|+|+++++.++|++++++|||||+++|.|...++. ..+.. ...+ .++....+++
T Consensus 247 ~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~---~~~~--~~~~~~~~g~ 320 (359)
T 1x19_A 247 VDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPNF---DYLS--HYILGAGMPF 320 (359)
T ss_dssp CCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCCH---HHHH--HHGGGGGSSC
T ss_pred CccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCchH---HHHH--HHHHhcCCCC
Confidence 99998 5666699999999999999889999999999999999999999887654 22211 1122 2332223466
Q ss_pred c----CCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 326 E----RTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 326 ~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
. ++.++|.++|+++||+.+++.+.+ ..++|+++|
T Consensus 321 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 321 SVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp CCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred cccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 6 899999999999999999999887 788999887
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=1.2e-42 Score=323.63 Aligned_cols=310 Identities=14% Similarity=0.209 Sum_probs=257.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
..+++++.+++.+++|++|+++|||+.|.. |.|++|||+++|+ +++.++|||++|++.|++++ .++.|.+
T Consensus 26 ~~l~~~~~~~~~~~~l~~a~~lgif~~l~~--~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~----~~~~y~~ 95 (352)
T 3mcz_A 26 VDLVKLSDQYRQSAILHYAVADKLFDLTQT--GRTPAEVAASFGM----VEGKAAILLHALAALGLLTK----EGDAFRN 95 (352)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTHHHHTTS--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCChHHHhCC--CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEe----cCCeeec
Confidence 338999999999999999999999999975 9999999999999 99999999999999999997 3478999
Q ss_pred chhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCc-chhccCCChhhhhccCccHHHHHHHHHhhcchhh
Q 018145 106 NPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIP-FNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIA 184 (360)
Q Consensus 106 t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 184 (360)
|+.++.++.+..+.+++.++.+. ...+..|.++.+.+++|.+. |.. ..++..+++....|...|......
T Consensus 96 t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~~~~~~f~~~m~~~~~~- 166 (352)
T 3mcz_A 96 TALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDTRARDAFNDAMVRLSQP- 166 (352)
T ss_dssp CHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCHHHHHHHHHHHHhhhhh-
Confidence 99999888777767777776542 34677899999999998653 221 123457888888999999873322
Q ss_pred HHHHHhhcccCCC-cceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-C--C
Q 018145 185 MERILEHYEGFQN-VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-S--V 253 (360)
Q Consensus 185 ~~~i~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~--~ 253 (360)
...+++.++ +.+ +.+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. ++|+++.+|+++ + .
T Consensus 167 ~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 167 MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence 347788887 666 899999999999999999999999999999998888877542 479999999998 4 5
Q ss_pred CCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 254 PEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 254 ~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
+.. |+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++....+ .....+++.|+....+++.++.++|
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~ 322 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWI 322 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHH
Confidence 655 999999999999999999999999999999999999999887653322 2334667777655557889999999
Q ss_pred HHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 333 TELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.++|+++||++++.. .+...+++++|
T Consensus 323 ~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 323 AGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHHHHCCCceeeec--cCceEEEEEec
Confidence 999999999999853 35577887775
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.87 E-value=2e-21 Score=172.40 Aligned_cols=163 Identities=12% Similarity=0.155 Sum_probs=120.7
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCCcEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~D~i~~~~ 263 (360)
.+++.+|||||||+|..+..+++.+ |+++++++|+ +.+++.|+++ .+|+++.+|+.+ +.+..|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4677899999999999999999986 6789999999 8999988652 479999999988 666669999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh-hhhHHHhh-hc------------CCCccCCH
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS-LLDVLLMT-RD------------GGGRERTK 329 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~-~~~~~~~~-~~------------~~~~~~t~ 329 (360)
+||++++++...+|++++++|||||+|++.|...+.++.. ...... ..++.... .+ .--...+.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~--~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKV--GELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHH--HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 9999998888899999999999999999999887654211 000000 00110000 00 00123588
Q ss_pred HHHHHHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 330 KEYTELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
+++.++|+++||+.++++.-- .+.++ .++|
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~-iA~K 256 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSL-VALK 256 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEE-EEEC
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEE-EEEE
Confidence 999999999999999886432 33333 4444
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.84 E-value=6.4e-20 Score=160.21 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=126.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC-cE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~-D~ 258 (360)
..++..++...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 34445444345678999999999999999999999999999999 8888776542 479999999988 55544 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHh------------hhcCCCcc
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM------------TRDGGGRE 326 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 326 (360)
|++..++|++++++...+|++++++|||||++++.+...+........ ....+...... ........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 999999999998887889999999999999999999877543110000 00000000000 00012345
Q ss_pred CCHHHHHHHHHHcCCceeeEEecCCceeEEEEe
Q 018145 327 RTKKEYTELAIAAGFKGINFASCVCNLYIMEFF 359 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
++.++|.++|+++||+.+++.......+++..+
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 224 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGR 224 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEE
Confidence 688999999999999999998776666655443
No 19
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.79 E-value=2.1e-18 Score=149.02 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=121.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CCCCC-cEEEe
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG-DAILM 261 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~~~~-D~i~~ 261 (360)
.+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444444 446789999999999999999987 568999998 8888877654 379999999988 55533 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHH--------HhhhcCCCccCCHHHHH
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL--------LMTRDGGGRERTKKEYT 333 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~t~~e~~ 333 (360)
..++|++++++...+|++++++|||||++++.++..+.... ........ ..... ....++.++|.
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 185 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDA------YDKTVEAAKQRGFHQLANDLQ-TEYYTRIPVMQ 185 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHH------HHHHHHHHHHTTCHHHHHHHH-HSCCCBHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHH------HHHHHHHHHhCCCccchhhcc-hhhcCCHHHHH
Confidence 99999999887777999999999999999999976643210 00011100 00000 12345889999
Q ss_pred HHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 334 ELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
++|+++||+++.+. ..+..|+++..|
T Consensus 186 ~~l~~aGf~v~~~~-~~~~~w~~~~~~ 211 (220)
T 3hnr_A 186 TIFENNGFHVTFTR-LNHFVWVMEATK 211 (220)
T ss_dssp HHHHHTTEEEEEEE-CSSSEEEEEEEE
T ss_pred HHHHHCCCEEEEee-ccceEEEEeehh
Confidence 99999999866654 457888887754
No 20
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.79 E-value=1.1e-19 Score=156.72 Aligned_cols=168 Identities=14% Similarity=0.218 Sum_probs=120.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
..++..++ .++. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 44555554 4444 9999999999999999998 8889999998 8888877653 479999999988 66644
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh-hhHHHhhhcCCCccCCHHHHH
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-LDVLLMTRDGGGRERTKKEYT 333 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~t~~e~~ 333 (360)
|+|++..++||++ +...+|++++++|||||++++.+...+.............. ..+..... .....++.++|.
T Consensus 111 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 187 (219)
T 3dlc_A 111 YADLIVSRGSVFFWE--DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVERFQ 187 (219)
T ss_dssp CEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHHHH
T ss_pred cccEEEECchHhhcc--CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHHHH
Confidence 9999999999986 44689999999999999999988654321000000000000 00000000 022345789999
Q ss_pred HHHHHcCCceeeEEecCCceeEEEEe
Q 018145 334 ELAIAAGFKGINFASCVCNLYIMEFF 359 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
++|+++||+.+++.....+.+++..+
T Consensus 188 ~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 188 NVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHcCCCeEEEEecCCceEEEEec
Confidence 99999999999999887777765543
No 21
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.78 E-value=2e-18 Score=149.08 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=125.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~ 256 (360)
..++..++ ..++.+|||||||+|.++..+++.+ |..+++++|. +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 34555555 6677899999999999999999997 7889999998 8888877653 479999999988 55544
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
|+|++..++|++++ ...+|++++++|||||++++.++......... .....++.++|.+
T Consensus 106 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 99999999999974 46899999999999999999997665421110 0122358899999
Q ss_pred HHHHcCCceeeEEecCCceeEEEEeC
Q 018145 335 LAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+++++||+++++....+....+.++|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999998888777777765
No 22
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.77 E-value=2.9e-18 Score=152.36 Aligned_cols=155 Identities=18% Similarity=0.320 Sum_probs=122.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 45566565 6677899999999999999999987 678999998 8888877654 689999999988 66543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++..++||+++++...+|++++++|||||++++.++..+..... . ..... .... .+...++.++|.++++
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~---~~~~~-~~~~--~~~~~~~~~~~~~~l~ 194 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW--D---DEFKE-YVKQ--RKYTLITVEEYADILT 194 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGC--C---HHHHH-HHHH--HTCCCCCHHHHHHHHH
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccc--h---HHHHH-HHhc--CCCCCCCHHHHHHHHH
Confidence 9999999999988888999999999999999999999876541111 0 11111 1111 1445679999999999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||+++++....
T Consensus 195 ~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 195 ACNFKNVVSKDLS 207 (266)
T ss_dssp HTTCEEEEEEECH
T ss_pred HcCCeEEEEEeCC
Confidence 9999999887654
No 23
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.77 E-value=4.8e-19 Score=153.74 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=115.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~ 267 (360)
++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++..++|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 468999999999999999999877 7888888 8888877653 679999999988 65543 99999999777
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh--cCC------------------CccC
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR--DGG------------------GRER 327 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~ 327 (360)
+..++...+|++++++|||||++++.++..+...... ...........+... ... ...+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 194 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVW 194 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheeehhhh
Confidence 7777888999999999999999999987532210000 000000000000000 000 0111
Q ss_pred CHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 328 TKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+ .+|.++|+++||+.+++.......++|+.+|
T Consensus 195 ~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 195 G-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp C-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred c-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 2 4899999999999999999888888999875
No 24
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.76 E-value=1.2e-17 Score=146.39 Aligned_cols=151 Identities=15% Similarity=0.296 Sum_probs=115.7
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC---CCCCC--cE
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DA 258 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~~--D~ 258 (360)
...+...++..+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++.+ |+
T Consensus 29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~ 104 (240)
T 3dli_A 29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDG 104 (240)
T ss_dssp HHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSE
T ss_pred HHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeE
Confidence 3344444443556789999999999999999988 456899998 8899888765 9999999876 45543 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
|++..++||+++++...+|++++++|||||++++..+.... .. ........ ......++.++|.+++++
T Consensus 105 i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~~----~~~~~~~~--~~~~~~~~~~~l~~~l~~ 173 (240)
T 3dli_A 105 VMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-----LY----SLINFYID--PTHKKPVHPETLKFILEY 173 (240)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-----HH----HHHHHTTS--TTCCSCCCHHHHHHHHHH
T ss_pred EEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-----hH----HHHHHhcC--ccccccCCHHHHHHHHHH
Confidence 99999999999888899999999999999999998765322 11 11111111 123456789999999999
Q ss_pred cCCceeeEEecC
Q 018145 339 AGFKGINFASCV 350 (360)
Q Consensus 339 aGf~~~~~~~~~ 350 (360)
+||+++++....
T Consensus 174 aGf~~~~~~~~~ 185 (240)
T 3dli_A 174 LGFRDVKIEFFE 185 (240)
T ss_dssp HTCEEEEEEEEC
T ss_pred CCCeEEEEEEec
Confidence 999999887654
No 25
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.76 E-value=6.3e-18 Score=150.00 Aligned_cols=154 Identities=17% Similarity=0.316 Sum_probs=116.5
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~ 256 (360)
...+++.++ ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 445666665 56778999999999999999999875 8889998 8888877643 579999999988 66643
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-cCCCccCCHHHHH
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-DGGGRERTKKEYT 333 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~ 333 (360)
|+|++..++||+++. ..+|++++++|||||+|++.++..+.. +.. ..+........ ......++.++|.
T Consensus 103 ~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEN---DAF---DVFYNYVEKERDYSHHRAWKKSDWL 174 (260)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSS---HHH---HHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred CEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCC---HHH---HHHHHHHHHhcCccccCCCCHHHHH
Confidence 999999999999854 689999999999999999999876542 111 11111111111 1134567899999
Q ss_pred HHHHHcCCceeeEEec
Q 018145 334 ELAIAAGFKGINFASC 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
++|+++||+++.+...
T Consensus 175 ~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 175 KMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHTCEEEEEEEE
T ss_pred HHHHHCCCeEEEEEEe
Confidence 9999999998877654
No 26
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.75 E-value=9.6e-18 Score=144.45 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=112.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCCCCCC-C-cEEEe
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFESVPE-G-DAILM 261 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~~~~~-~-D~i~~ 261 (360)
.++..+....++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 113 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFF 113 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEE
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEE
Confidence 44444443456679999999999999999998 568999998 8888887653 5799999999885443 3 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC------CccCCHHHHHHH
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG------GRERTKKEYTEL 335 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~t~~e~~~l 335 (360)
.+++||++++....+|++++++|||||++++.+...+.......... ............+ ....+.++|.++
T Consensus 114 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (218)
T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRRTLQDGRSFRIVKVFRSPAELTER 191 (218)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHHHHHH
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceeeecCCcchhhHhhcCCCHHHHHHH
Confidence 99999999887889999999999999999999987643210000000 0000000000001 123589999999
Q ss_pred HHHcCCceeeEEe
Q 018145 336 AIAAGFKGINFAS 348 (360)
Q Consensus 336 l~~aGf~~~~~~~ 348 (360)
++++||++.....
T Consensus 192 l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 192 LTALGWSCSVDEV 204 (218)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCEEEeeec
Confidence 9999999544443
No 27
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.75 E-value=1.8e-17 Score=149.16 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=120.4
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCCc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGD 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~D 257 (360)
..+++.++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+.....|
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD 131 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVD 131 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCS
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCee
Confidence 35566665 66778999999999999999997764 49999998 8888877542 479999999865212339
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC-----CchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-----VSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
+|++..++||+++++...+|++++++|||||++++.++..+.... .+.........++......+++..++.++|
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV 211 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHH
Confidence 999999999998777889999999999999999999987654210 000000001112221112346777899999
Q ss_pred HHHHHHcCCceeeEEecC
Q 018145 333 TELAIAAGFKGINFASCV 350 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~ 350 (360)
.++++++||+++++...+
T Consensus 212 ~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 212 QECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHTTTCEEEEEEECH
T ss_pred HHHHHhCCcEEEEEEeCc
Confidence 999999999999987653
No 28
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.75 E-value=2.1e-17 Score=147.55 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=120.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 45666665 6678899999999999999999987 689999998 7888776542 479999999988 66643
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
|+|++..++||+++. ..+|++++++|||||++++.++......... .....+..... ......++.++|.+
T Consensus 129 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~ 201 (273)
T 3bus_A 129 SFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGA----KKEAVDAFRAG-GGVLSLGGIDEYES 201 (273)
T ss_dssp CEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHH----HHHHHHHHHHH-HTCCCCCCHHHHHH
T ss_pred CccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChh----HHHHHHHHHhh-cCccCCCCHHHHHH
Confidence 999999999999754 6899999999999999999998765421111 01111111111 13566789999999
Q ss_pred HHHHcCCceeeEEecC
Q 018145 335 LAIAAGFKGINFASCV 350 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~ 350 (360)
+++++||+++++...+
T Consensus 202 ~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 202 DVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEECc
Confidence 9999999999887654
No 29
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.74 E-value=3.3e-17 Score=148.62 Aligned_cols=163 Identities=17% Similarity=0.262 Sum_probs=123.0
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~- 256 (360)
..++..++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.++++ ++++++.+|+.+. +..
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f 138 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV 138 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence 45666665 67788999999999999999999976 88999998 8888877653 3799999998765 433
Q ss_pred cEEEeccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhh-----hhhhhhhHHHhhhcCCC
Q 018145 257 DAILMKWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAA-----RETSLLDVLLMTRDGGG 324 (360)
Q Consensus 257 D~i~~~~vlh~~~~-------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 324 (360)
|+|++..++||+++ +....+|++++++|||||++++.+...+......... ......++......+++
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 218 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 218 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence 99999999999944 5678999999999999999999998765421000000 00001122222233567
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEecCC
Q 018145 325 RERTKKEYTELAIAAGFKGINFASCVC 351 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 351 (360)
..++.+++.++++++||+++++.....
T Consensus 219 ~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 219 RLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 888999999999999999999877653
No 30
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.74 E-value=4e-18 Score=150.53 Aligned_cols=149 Identities=17% Similarity=0.287 Sum_probs=116.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
..++..++ ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 35566565 5567899999999999999999886 567889998 8888877543 579999999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++.+++||+++++...+|++++++|||||++++.++....... ..+ .......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVD-----KEDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEE-----TTTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eec-----ccCCcccCCHHHHHHHHH
Confidence 999999999999888899999999999999999999975533210 011 011334568999999999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999987654
No 31
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.73 E-value=2.9e-17 Score=148.55 Aligned_cols=154 Identities=16% Similarity=0.238 Sum_probs=117.9
Q ss_pred HHHHhhc---ccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CC
Q 018145 186 ERILEHY---EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SV 253 (360)
Q Consensus 186 ~~i~~~~---~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~ 253 (360)
..+++.+ ....++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ ++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence 4555555 126678899999999999999999986 468999998 8888877542 579999999988 66
Q ss_pred CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHH
Q 018145 254 PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 331 (360)
Q Consensus 254 ~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 331 (360)
+.+ |+|++..++||+++ ...+|++++++|||||++++.++..+...... ....+.... . .....+.++
T Consensus 147 ~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~-~-~~~~~~~~~ 216 (297)
T 2o57_A 147 EDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS------SIQPILDRI-K-LHDMGSLGL 216 (297)
T ss_dssp CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG------GGHHHHHHH-T-CSSCCCHHH
T ss_pred CCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH------HHHHHHHHh-c-CCCCCCHHH
Confidence 654 99999999999986 57899999999999999999998775432211 011111111 1 233568999
Q ss_pred HHHHHHHcCCceeeEEecC
Q 018145 332 YTELAIAAGFKGINFASCV 350 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~~ 350 (360)
|.++++++||+++++....
T Consensus 217 ~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 217 YRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHCCCeEEEEEECc
Confidence 9999999999999887653
No 32
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.73 E-value=7.2e-18 Score=149.87 Aligned_cols=163 Identities=16% Similarity=0.134 Sum_probs=116.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC-cEEEecc-ccccCCh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMKW-ILHCWDD 270 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~-D~i~~~~-vlh~~~~ 270 (360)
+++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++||+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 4568999999999999999999854 6888888 8888887653 689999999988 55444 9999998 9999864
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh---------h-----------hhhhhHHHhhhcCC------
Q 018145 271 -DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR---------E-----------TSLLDVLLMTRDGG------ 323 (360)
Q Consensus 271 -~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~------ 323 (360)
++...+|++++++|||||+|++.+...+.......... . .....+.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 56779999999999999999997654433211000000 0 00000000000001
Q ss_pred -----CccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 324 -----GRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 324 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.+.++.++|.++|+++||+++++........+++++|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999999977766666776664
No 33
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.73 E-value=4.1e-17 Score=142.91 Aligned_cols=152 Identities=17% Similarity=0.313 Sum_probs=115.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~-- 256 (360)
.+++.+. ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 12 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 88 (239)
T 1xxl_A 12 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 88 (239)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred hHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcE
Confidence 4455555 67789999999999999999999875 7888888 8888877542 579999999987 66543
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHH-hhhcCCCccCCHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL-MTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++||+++ ...+|++++++|||||++++.+...+.. ... ..+..... .........++.++|.++
T Consensus 89 D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (239)
T 1xxl_A 89 DIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPED---PVL---DEFVNHLNRLRDPSHVRESSLSEWQAM 160 (239)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSS---HHH---HHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred EEEEECCchhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCC---hhH---HHHHHHHHHhccccccCCCCHHHHHHH
Confidence 99999999999985 4689999999999999999999876542 111 11111111 111113456789999999
Q ss_pred HHHcCCceeeEEec
Q 018145 336 AIAAGFKGINFASC 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
|+++||+++++...
T Consensus 161 l~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 161 FSANQLAYQDIQKW 174 (239)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHCCCcEEEEEee
Confidence 99999998887654
No 34
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.73 E-value=6.5e-18 Score=144.11 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=113.7
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEeccccccCChhH
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 272 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~ 272 (360)
+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+ |+|++.+++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999988 558899998 8888888763 689999999988 55543 9999999999998778
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCC-
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVC- 351 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~- 351 (360)
...+|++++++|||||++++.++..+... . ... . ......++.++|.++|+++||+++++...+.
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~---~~~----~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE------P---MYH----P-VATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE------E---ECC----S-SSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh------h---hhc----h-hhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 89999999999999999999887554310 0 000 0 0123456899999999999999999987653
Q ss_pred ceeEE
Q 018145 352 NLYIM 356 (360)
Q Consensus 352 ~~~vi 356 (360)
.+..+
T Consensus 186 p~~~l 190 (203)
T 3h2b_A 186 PHAYL 190 (203)
T ss_dssp SEEEE
T ss_pred cchhh
Confidence 34433
No 35
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.72 E-value=6.1e-17 Score=147.58 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=122.4
Q ss_pred HhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecC
Q 018145 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGN 248 (360)
Q Consensus 177 m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d 248 (360)
+..........+++.++.+.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 3333444445666666545677899999999999999999986 578999998 8888877642 479999999
Q ss_pred CCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCc
Q 018145 249 MFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 325 (360)
Q Consensus 249 ~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (360)
+.+ +++.+ |+|++..++|+++ ...+|++++++|||||++++.++.......... .......... ...
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAHF--ECN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHHH--TCC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhhh--cCC
Confidence 988 66543 9999999999984 678999999999999999999987765321110 1111111111 123
Q ss_pred cCCHHHHHHHHHHcCCceeeEEecC
Q 018145 326 ERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 326 ~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.++.++|.++++++||+++++....
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 6789999999999999999887653
No 36
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.72 E-value=3.2e-17 Score=145.00 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=116.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~- 256 (360)
.++..+....++.+|||||||+|.++..+++.++. +++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE 114 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence 44555543566789999999999999999999985 8999998 8888876542 459999999977 65543
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++||++ ...+|++++++|||||++++.++......... ......... ....++.++|.++
T Consensus 115 fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~ 182 (257)
T 3f4k_A 115 LDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCIDK 182 (257)
T ss_dssp EEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHHHH
T ss_pred EEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence 9999999999983 45789999999999999999998754432211 111211111 1235689999999
Q ss_pred HHHcCCceeeEEecCC
Q 018145 336 AIAAGFKGINFASCVC 351 (360)
Q Consensus 336 l~~aGf~~~~~~~~~~ 351 (360)
++++||+++++...+.
T Consensus 183 l~~aGf~~v~~~~~~~ 198 (257)
T 3f4k_A 183 MERAGYTPTAHFILPE 198 (257)
T ss_dssp HHHTTEEEEEEEECCG
T ss_pred HHHCCCeEEEEEECCh
Confidence 9999999999877663
No 37
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.72 E-value=1.1e-16 Score=142.12 Aligned_cols=152 Identities=11% Similarity=0.141 Sum_probs=115.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEe
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILM 261 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~ 261 (360)
..+++.++ ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.+++..+++++.+|+.+ +++.. |+|++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 34555555 56779999999999999999998 6789999999 8999999888899999999988 66543 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
.+++||++ +...+|++++++|| ||++++.++..+.... .+. ...+...... . +...++.+++. +|+++||
T Consensus 101 ~~~l~~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-~~~---~~~~~~~~~~-~-~~~~~~~~~~~-~l~~aGF 170 (261)
T 3ege_A 101 ILAIHHFS--HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQR-IWL---YDYFPFLWED-A-LRFLPLDEQIN-LLQENTK 170 (261)
T ss_dssp ESCGGGCS--SHHHHHHHHHHHBC-SSCEEEEEECGGGCCC-CGG---GGTCHHHHHH-H-HTSCCHHHHHH-HHHHHHC
T ss_pred cchHhhcc--CHHHHHHHHHHHhC-CcEEEEEEcCCchhHH-HHH---HHHHHHHhhh-h-hhhCCCHHHHH-HHHHcCC
Confidence 99999996 45689999999999 9999999986543211 111 0111111111 1 23445778888 9999999
Q ss_pred ceeeEEecC
Q 018145 342 KGINFASCV 350 (360)
Q Consensus 342 ~~~~~~~~~ 350 (360)
+.+++....
T Consensus 171 ~~v~~~~~~ 179 (261)
T 3ege_A 171 RRVEAIPFL 179 (261)
T ss_dssp SEEEEEECC
T ss_pred CceeEEEec
Confidence 998887653
No 38
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.72 E-value=8e-17 Score=147.18 Aligned_cols=163 Identities=15% Similarity=0.252 Sum_probs=121.0
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCCc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGD 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~D 257 (360)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+.....|
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD 157 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD 157 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcC
Confidence 45566665 6677899999999999999999987 568999998 8888877643 469999999866212349
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc----hhh-hhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS----SAA-RETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
+|++..++||+++++...+|++++++|||||++++.++..+...... ... ......++......+++..++.+++
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 237 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMM 237 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHH
Confidence 99999999999877888999999999999999999998765421000 000 0000112222122346777899999
Q ss_pred HHHHHHcCCceeeEEecC
Q 018145 333 TELAIAAGFKGINFASCV 350 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~ 350 (360)
.++++++||+++++....
T Consensus 238 ~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 238 VEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHTTCBCCCCEECH
T ss_pred HHHHHhCCCEEEEEEecc
Confidence 999999999999887643
No 39
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.72 E-value=3.2e-17 Score=144.95 Aligned_cols=153 Identities=10% Similarity=0.071 Sum_probs=116.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
..++..+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 45555555 6677899999999999999999987 678999998 8888877542 479999999988 44333
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++|++++ ...+|++++++|||||++++.++.....+.... ....... ......++.++|.++
T Consensus 104 fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~ 173 (256)
T 1nkv_A 104 CDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE------IAQACGV--SSTSDFLTLPGLVGA 173 (256)
T ss_dssp EEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH------HHHTTTC--SCGGGSCCHHHHHHH
T ss_pred CCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHH------HHHHHhc--ccccccCCHHHHHHH
Confidence 99999999999874 468999999999999999999987654322111 0100000 112245689999999
Q ss_pred HHHcCCceeeEEecC
Q 018145 336 AIAAGFKGINFASCV 350 (360)
Q Consensus 336 l~~aGf~~~~~~~~~ 350 (360)
++++||+.+++...+
T Consensus 174 l~~aGf~~~~~~~~~ 188 (256)
T 1nkv_A 174 FDDLGYDVVEMVLAD 188 (256)
T ss_dssp HHTTTBCCCEEEECC
T ss_pred HHHCCCeeEEEEeCC
Confidence 999999998876543
No 40
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.72 E-value=3.2e-17 Score=146.03 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=117.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~- 256 (360)
.++..++...++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 34444443567789999999999999999998 8889999999 8888877643 569999999987 55543
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++|+++ ...+|++++++|||||++++.++......... ........ . ....++.+++.++
T Consensus 115 fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~--~-~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMD--A-YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHH--H-CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHH--h-CCCCCCHHHHHHH
Confidence 9999999999983 36789999999999999999998764432211 11121111 1 2345689999999
Q ss_pred HHHcCCceeeEEecCC
Q 018145 336 AIAAGFKGINFASCVC 351 (360)
Q Consensus 336 l~~aGf~~~~~~~~~~ 351 (360)
++++||+++++...+.
T Consensus 183 l~~aGf~~v~~~~~~~ 198 (267)
T 3kkz_A 183 IHKAGYLPVATFILPE 198 (267)
T ss_dssp HHHTTEEEEEEEECCG
T ss_pred HHHCCCEEEEEEECCH
Confidence 9999999999987663
No 41
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.71 E-value=2.6e-17 Score=147.28 Aligned_cols=151 Identities=17% Similarity=0.305 Sum_probs=114.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~v 264 (360)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56788999999999999999999999999999998 8888877542 579999999988 55543 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC---CCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI---PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
+|++++. ..+|++++++|||||++++.++..... +...... ..+..+.......++..++..+|.++|+++||
T Consensus 115 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 190 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI--EAWNCLIRVQAYMKGNSLVGRQIYPLLQESGF 190 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHH--HHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTC
T ss_pred hhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHH--HHHHHHHHHHHhcCCCcchHHHHHHHHHHCCC
Confidence 9999865 489999999999999999998654221 1111110 11111111111124556677899999999999
Q ss_pred ceeeEEec
Q 018145 342 KGINFASC 349 (360)
Q Consensus 342 ~~~~~~~~ 349 (360)
+++++...
T Consensus 191 ~~v~~~~~ 198 (276)
T 3mgg_A 191 EKIRVEPR 198 (276)
T ss_dssp EEEEEEEE
T ss_pred CeEEEeeE
Confidence 99888654
No 42
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.71 E-value=2.2e-17 Score=136.74 Aligned_cols=146 Identities=15% Similarity=0.150 Sum_probs=115.5
Q ss_pred HhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-CCCcEEEecCCCCCCCCC--cEEEeccc
Q 018145 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMKWI 264 (360)
Q Consensus 189 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~~~~~~--D~i~~~~v 264 (360)
++.++ ..++.+|||||||+|.++..+++.+. +++++|+ +.+++.+++ .+++++..+| .+++.. |+|++..+
T Consensus 10 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 10 LPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANS 84 (170)
T ss_dssp HHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESC
T ss_pred HHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccc
Confidence 33344 56778999999999999999999874 8899998 888887765 4789999999 444433 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 344 (360)
+|++++ ...+++++++.|||||++++.++........+ .....++.++|.++++ ||+++
T Consensus 85 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~~ 143 (170)
T 3i9f_A 85 FHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVVE 143 (170)
T ss_dssp STTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEEE
T ss_pred hhcccC--HHHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEEE
Confidence 999874 46899999999999999999997765421111 0112358999999999 99999
Q ss_pred eEEecCCceeEEEEeC
Q 018145 345 NFASCVCNLYIMEFFK 360 (360)
Q Consensus 345 ~~~~~~~~~~vi~~~k 360 (360)
++.........+++.|
T Consensus 144 ~~~~~~~~~~~l~~~~ 159 (170)
T 3i9f_A 144 KRFNPTPYHFGLVLKR 159 (170)
T ss_dssp EEECSSTTEEEEEEEE
T ss_pred EccCCCCceEEEEEec
Confidence 9999887777776653
No 43
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.71 E-value=2.3e-17 Score=144.16 Aligned_cols=163 Identities=16% Similarity=0.160 Sum_probs=116.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC-cEEEe-ccccccCCh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILM-KWILHCWDD 270 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~-D~i~~-~~vlh~~~~ 270 (360)
.++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999976 7888888 8888887654 679999999988 55444 99995 559999854
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchh-hh-------------------hhhhhhHHHhhhcCCC-----
Q 018145 271 -DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSA-AR-------------------ETSLLDVLLMTRDGGG----- 324 (360)
Q Consensus 271 -~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~----- 324 (360)
++...+|++++++|||||++++.++..++....... .+ ......+.+.....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 677899999999999999999987655432110000 00 0000000000000011
Q ss_pred ------ccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 325 ------RERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 325 ------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+.++.++|.++|+++||+++.+....+...+++++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346899999999999998777766556777888775
No 44
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.71 E-value=4.7e-17 Score=147.84 Aligned_cols=165 Identities=15% Similarity=0.185 Sum_probs=118.7
Q ss_pred CCCcceEEEEcCCcchHHHHHH-hhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~ 263 (360)
..++.+|||||||+|.++..++ ...|+.+++++|+ +.+++.++++ ++++++.+|+.+ +.+.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4667899999999999999986 6788999999999 8888877642 359999999988 55544 9999999
Q ss_pred ccccCChh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhh-----h---hhhhHHHhhhcCC--CccCCHHHH
Q 018145 264 ILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARE-----T---SLLDVLLMTRDGG--GRERTKKEY 332 (360)
Q Consensus 264 vlh~~~~~-~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~--~~~~t~~e~ 332 (360)
++||+++. ....+|++++++|||||++++.+...+...... ..+. . ............. ...++.++|
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPD-SPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTT-CCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCccccc-ccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 99999654 445799999999999999999887664321110 0000 0 0000011111101 134799999
Q ss_pred HHHHHHcCCceeeEEecCCc-eeEEEEeC
Q 018145 333 TELAIAAGFKGINFASCVCN-LYIMEFFK 360 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 360 (360)
.++|+++||+++++.....+ ...+.++|
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999999876543 33555554
No 45
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.70 E-value=2.5e-16 Score=140.67 Aligned_cols=141 Identities=17% Similarity=0.285 Sum_probs=110.1
Q ss_pred CCcceEEEEcCCc---chHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCCC------------CC-
Q 018145 196 QNVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFES------------VP- 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~------------~~- 254 (360)
.+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.++++ ++++++.+|+.++ ++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 3458999999999 999888888899999999999 8999887653 6899999999762 22
Q ss_pred -CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHH
Q 018145 255 -EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 333 (360)
Q Consensus 255 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 333 (360)
..|+|++..+|||+++++...+|++++++|||||+|++.+...+. ... .....+.+.... .....++.+++.
T Consensus 156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~-~~~~~~s~~ei~ 228 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENL-GEGWARTPEEIE 228 (274)
T ss_dssp TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHH-SCCCCBCHHHHH
T ss_pred CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcC-CCCccCCHHHHH
Confidence 339999999999999877889999999999999999999976532 111 111222222221 245678999999
Q ss_pred HHHHHcCCceee
Q 018145 334 ELAIAAGFKGIN 345 (360)
Q Consensus 334 ~ll~~aGf~~~~ 345 (360)
++| .||++++
T Consensus 229 ~~l--~G~~l~~ 238 (274)
T 2qe6_A 229 RQF--GDFELVE 238 (274)
T ss_dssp HTT--TTCEECT
T ss_pred HHh--CCCeEcc
Confidence 999 5998775
No 46
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.70 E-value=6.5e-17 Score=142.00 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=106.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-C-CcEEEecCCCCCCCC-C-cEEEeccccccCCh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-A-GVEHVGGNMFESVPE-G-DAILMKWILHCWDD 270 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-~v~~~~~d~~~~~~~-~-D~i~~~~vlh~~~~ 270 (360)
.++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++. . +++++.+|+.+..+. . |+|++.+++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4567999999999999999999876 5777887 8888877653 2 799999999874333 3 99999999999985
Q ss_pred hHHHHHHHHHH-HhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhH--------HHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 271 DHCLRILKNCY-KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV--------LLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 271 ~~~~~~L~~i~-~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
. ..+|++++ ++|||||++++.++..... .......... ...........++.++|.++|+++||
T Consensus 119 ~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 119 P--VALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp H--HHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 4 68999999 9999999999988654321 0000000000 00001123456799999999999999
Q ss_pred ceeeEEe
Q 018145 342 KGINFAS 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
+++++..
T Consensus 192 ~~~~~~~ 198 (250)
T 2p7i_A 192 QVTYRSG 198 (250)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 9988864
No 47
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.70 E-value=4.9e-17 Score=139.54 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=110.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC-cEEEeccccccCChh
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDD 271 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~~~ 271 (360)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++..+|+.+ +.+.. |+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345789999999999999999987 568899998 8888888765578899999887 52233 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcC-CceeeEEecC
Q 018145 272 HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG-FKGINFASCV 350 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~~~ 350 (360)
+...+|++++++|||||++++..+........ .. ......++.++|.++|+++| |+++++....
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 88999999999999999999986543321000 00 01123468999999999999 9999987543
No 48
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.70 E-value=4.6e-17 Score=139.02 Aligned_cols=141 Identities=11% Similarity=0.060 Sum_probs=107.2
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------------------CCcEEEecC
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------AGVEHVGGN 248 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~v~~~~~d 248 (360)
++..+. ..++.+|||+|||+|..+..+++. +.+++++|+ +.+++.|+++ .+++++.+|
T Consensus 14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 334443 456789999999999999999997 468999998 8888877542 479999999
Q ss_pred CCC-CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC
Q 018145 249 MFE-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG 324 (360)
Q Consensus 249 ~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (360)
+.+ +.+ .. |+|++..++|++++++..+++++++++|||||+++++....+.. . .....
T Consensus 91 ~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~-~-----------------~~~~~ 152 (203)
T 1pjz_A 91 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA-L-----------------LEGPP 152 (203)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS-S-----------------SSSCC
T ss_pred cccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc-c-----------------cCCCC
Confidence 998 543 23 99999999999998888899999999999999966555433211 0 00011
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 325 RERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
...+.+++.+++++ ||+++.+....
T Consensus 153 ~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 153 FSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp CCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCHHHHHHHhcC-CcEEEEecccc
Confidence 22578999999998 99987776543
No 49
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.70 E-value=9.9e-17 Score=144.23 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=114.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-c
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D 257 (360)
.++..+....++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 34444433567899999999999999999999985 89999998 8888776542 379999999998 55544 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec-----C---CCCCCchhhhhhhhhhHHHhh-hcCCCccCC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV-----P---EIPEVSSAARETSLLDVLLMT-RDGGGRERT 328 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~-----~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t 328 (360)
+|++..++|++++. ..+|++++++|||||++++.++.. . .+...+.......+..+.... ...+....+
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 169 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence 99999999999854 689999999999999999999761 1 110000000011122211111 012444556
Q ss_pred HHHHHHHHHHcCCceeeEEec
Q 018145 329 KKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..++.++|+++||+.+++...
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEc
Confidence 778999999999999877443
No 50
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.69 E-value=1.5e-16 Score=148.41 Aligned_cols=215 Identities=10% Similarity=0.034 Sum_probs=139.8
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCCCCCChHHHhh-
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMA- 126 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~~~~~~~~~~~- 126 (360)
|+|..| . +|.|+++||+.+|+ +++.+++||+.|.+.|+++. .++ |++|+.++.++...+.....+...
T Consensus 47 ~ll~~L-~-~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~----~~~-~~lt~~~~~~l~~~~~~~~~~~~~~ 115 (373)
T 2qm3_A 47 NVLSAV-L-ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTF----EDG-VKLTEKGEELVAEYGIGKRYDFTCP 115 (373)
T ss_dssp HHHHHH-H-HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC----SSS-SEECHHHHHHHHHHTCCCCCC----
T ss_pred HHHHHh-c-CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEE----CCC-EEECHHHHHHHHhcCccccccccch
Confidence 789999 5 59999999999999 99999999999999999986 224 999998876654422111100000
Q ss_pred c-c----CChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceE
Q 018145 127 L-P----LDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL 201 (360)
Q Consensus 127 ~-~----~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~v 201 (360)
. . ..+.+...|..+.+.++....+. ..|+.....++ ....... .... .. ..++.+|
T Consensus 116 ~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~l---------~~~~-~~-~~~~~~V 176 (373)
T 2qm3_A 116 HCQGKTVDLQAFADLLEQFREIVKDRPEPL------HEFDQAYVTPE--TTVARVI---------LMHT-RG-DLENKDI 176 (373)
T ss_dssp --------CGGGHHHHHHHHHHHTTCCCCC------GGGTCCCBCHH--HHHHHHH---------HHHH-TT-CSTTCEE
T ss_pred hhcCCCcchhhhHHHHHHHHHHHhcCCccc------hhcCCeecCHH--HHHHHHH---------HHhh-cC-CCCCCEE
Confidence 0 0 00111112334444444332111 11111011111 1111100 0011 11 2346899
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC----C-cEEEeccccccCC
Q 018145 202 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE----G-DAILMKWILHCWD 269 (360)
Q Consensus 202 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~----~-D~i~~~~vlh~~~ 269 (360)
|||| |+|.++..+++..|+.+++++|+ +.+++.|+++ .+|+++.+|+.+.+|. . |+|++...++..
T Consensus 177 LDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~- 254 (373)
T 2qm3_A 177 FVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE- 254 (373)
T ss_dssp EEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-
T ss_pred EEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchH-
Confidence 9999 99999999999988889999999 8999888653 3799999999884442 3 999998776643
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
....++++++++|||||++++.+..
T Consensus 255 --~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 255 --AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp --HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred --HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 3578999999999999977666544
No 51
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.69 E-value=3.2e-17 Score=143.73 Aligned_cols=138 Identities=16% Similarity=0.243 Sum_probs=111.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEeccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWILH 266 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~vlh 266 (360)
++.+|||||||+|.++..+++.+ ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998887 568999998 8888877643 258899999877 55543 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeE
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 346 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
+++++....+|++++++|||||++++.++..+.. . .++. ..+...++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998878899999999999999999999876541 0 0110 11233458999999999999999998
Q ss_pred EecC
Q 018145 347 ASCV 350 (360)
Q Consensus 347 ~~~~ 350 (360)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7654
No 52
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.69 E-value=1.5e-16 Score=149.13 Aligned_cols=144 Identities=17% Similarity=0.294 Sum_probs=112.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC--------------CCcEEEecCCCC-------C
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFE-------S 252 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~d~~~-------~ 252 (360)
.++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 456899999999999999999987 7889999999 8888887653 589999999987 4
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHH
Q 018145 253 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 330 (360)
Q Consensus 253 ~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 330 (360)
++.. |+|++..++|++++ ...+|++++++|||||+|++.+......... .. ........ ...+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~-----~~~~~~~~-~~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSE-AA-----QQDPILYG-ECLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCH-HH-----HHCHHHHH-TTCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCH-hH-----hhhHHHhh-cccccCCCHH
Confidence 4443 99999999999875 4689999999999999999999876542111 10 01111111 1234567889
Q ss_pred HHHHHHHHcCCceeeEEe
Q 018145 331 EYTELAIAAGFKGINFAS 348 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~ 348 (360)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887754
No 53
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.69 E-value=2.5e-16 Score=137.92 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=109.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cEEEeccccccC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 268 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~ 268 (360)
+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.+++||+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 45689999999999999999998 568899998 8888887664 679999999988 66543 999999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
++ ...+|++++++|+|||++++.++........ ...... ... ......++.+++.++++++||++++...
T Consensus 130 ~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~------~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EE--PLRALNEIKRVLKSDGYACIAILGPTAKPRE------NSYPRL-YGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SC--HHHHHHHHHHHEEEEEEEEEEEECTTCGGGG------GGGGGG-GTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cC--HHHHHHHHHHHhCCCeEEEEEEcCCcchhhh------hhhhhh-ccc-cccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 74 4689999999999999999998654332110 011111 110 1133457899999999999999998864
Q ss_pred c
Q 018145 349 C 349 (360)
Q Consensus 349 ~ 349 (360)
.
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 3
No 54
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.68 E-value=1.9e-16 Score=136.69 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=104.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCC-CCCC--CcEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPE--GDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~~~--~D~i 259 (360)
..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. .+++++.+|+.. +.+. .|+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 34568999999999999999999999899999998 8888887653 179999999966 4332 3999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHH----HH
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT----EL 335 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~l 335 (360)
++..++||+++++..++|++++++|||||.+++....... .... ......... ......++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~-~~~~------~~~~~~~~~-~~~~~~~~~~~l~~~~~~l 178 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYN-FHYG------NLFEGNLRH-RDHRFEWTRKEFQTWAVKV 178 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGG-GCCC------CT-----GG-GCCTTSBCHHHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhh-hhhc------ccCcccccc-cCceeeecHHHHHHHHHHH
Confidence 9999999999888889999999999999966554432111 0000 000000000 1123345888888 88
Q ss_pred HHHcCCceeeE
Q 018145 336 AIAAGFKGINF 346 (360)
Q Consensus 336 l~~aGf~~~~~ 346 (360)
++++||++...
T Consensus 179 ~~~~Gf~v~~~ 189 (219)
T 3jwg_A 179 AEKYGYSVRFL 189 (219)
T ss_dssp HHHHTEEEEEE
T ss_pred HHHCCcEEEEE
Confidence 99999975444
No 55
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.68 E-value=1.1e-16 Score=144.91 Aligned_cols=163 Identities=9% Similarity=0.083 Sum_probs=113.8
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCC-C
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-S 252 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~ 252 (360)
....++..++ . ++.+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++++.+|+.+ +
T Consensus 71 ~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 71 EAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 3455666654 2 3459999999999999999988 467889998 8888887653 569999999998 5
Q ss_pred CCCC-cEEEe-ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC---CCchhhhh---hhhh-----------
Q 018145 253 VPEG-DAILM-KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP---EVSSAARE---TSLL----------- 313 (360)
Q Consensus 253 ~~~~-D~i~~-~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~---~~~~~~~~---~~~~----------- 313 (360)
.+.. |+|++ ..++|++++++...+|++++++|||||+|++..+..+... ........ ...+
T Consensus 147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 226 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEE 226 (299)
T ss_dssp CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEE
T ss_pred cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecccc
Confidence 5544 98885 5778888877889999999999999999999876553210 00000000 0000
Q ss_pred --hHHHhh----------hcCCCccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 314 --DVLLMT----------RDGGGRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 314 --~~~~~~----------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.+.... .....+.++.++|.++|+++||+++++.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 227 IQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp EEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 000000 0001124599999999999999999998876
No 56
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.68 E-value=1.1e-16 Score=139.70 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=107.4
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC-C-cEEEecccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKWILHC 267 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~-~-D~i~~~~vlh~ 267 (360)
+.+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999877 5678999998 8888877543 3599999999983343 3 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
+++++...+|++++++|||||++++.+......... ....++.++|.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 998888999999999999999999988654321110 1122588999999999999999987
Q ss_pred ecC
Q 018145 348 SCV 350 (360)
Q Consensus 348 ~~~ 350 (360)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 665
No 57
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.67 E-value=1.9e-16 Score=136.48 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=104.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCC-CCC--CCcEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVP--EGDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~~--~~D~i 259 (360)
..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.++++ .+++++.+|+.. +.+ ..|+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34568999999999999999999999899999998 8888877543 279999999866 433 23999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHH----HH
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT----EL 335 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~l 335 (360)
++..++||+++++...+|++++++|||||.+++....... ..+.......... ......++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-------VKFANLPAGKLRH-KDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-------HHTC------------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-------hhhcccccccccc-cccccccCHHHHHHHHHHH
Confidence 9999999999888899999999999999976665432100 0000000000000 1123345888888 89
Q ss_pred HHHcCCceeeE
Q 018145 336 AIAAGFKGINF 346 (360)
Q Consensus 336 l~~aGf~~~~~ 346 (360)
++++||++...
T Consensus 179 ~~~~Gf~v~~~ 189 (217)
T 3jwh_A 179 TERFAYNVQFQ 189 (217)
T ss_dssp HHHSSEEEEEC
T ss_pred HHHcCceEEEE
Confidence 99999986443
No 58
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.67 E-value=8.6e-16 Score=137.21 Aligned_cols=160 Identities=10% Similarity=0.078 Sum_probs=112.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hh------HHHhCCCC-------CCcEEEecC-CC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH------VVQDAPSY-------AGVEHVGGN-MF 250 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~-------~~v~~~~~d-~~ 250 (360)
.+++.++ ..++.+|||||||+|.++..+++.+ |+.+++++|+ +. +++.++++ ++++++.+| +.
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4555565 6678899999999999999999996 7789999998 44 67766542 479999998 43
Q ss_pred C---CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcC---
Q 018145 251 E---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG--- 322 (360)
Q Consensus 251 ~---~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 322 (360)
. +++.+ |+|++..++||+++.. .+++.++++++|||++++.+...+........................
T Consensus 113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDV 190 (275)
T ss_dssp TCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTT
T ss_pred hccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccc
Confidence 3 33433 9999999999998664 478888888888999999998775432111000000011101100000
Q ss_pred --CCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 323 --GGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 323 --~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....++.++|.++++++||+++++...
T Consensus 191 ~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 191 ANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 123579999999999999999888665
No 59
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.66 E-value=1.1e-15 Score=133.06 Aligned_cols=150 Identities=18% Similarity=0.146 Sum_probs=109.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCC-CCCCC--cEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPEG--DAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~~~~--D~i 259 (360)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++++..+|+.+ +.+.. |+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 346789999999999999999998 568999998 7777766541 257999999988 55543 999
Q ss_pred EeccccccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc--------------CCC
Q 018145 260 LMKWILHCWDD-DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD--------------GGG 324 (360)
Q Consensus 260 ~~~~vlh~~~~-~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 324 (360)
++..++|++++ +....+|++++++|||||++++.++...... .... ......+...... ...
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--KLYR-KRYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--HHHH-HHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--HHHH-HHhhhhccchhhhcceEecccccCCcceee
Confidence 99999999975 4466899999999999999999997654321 1100 0001111110000 001
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEec
Q 018145 325 RERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..++.++|.++|+++||+++++...
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEec
Confidence 3569999999999999999988643
No 60
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.66 E-value=3.8e-16 Score=139.98 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=112.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC-cEEEec
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMK 262 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~-D~i~~~ 262 (360)
.+++.++ ..++.+|||||||+|.++..+++ +..+++++|+ +.+++.+++. +++++..+|+.+ +.+.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4455555 56678999999999999999998 7789999998 8888887654 689999999988 55444 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh------hcCCCccCCHHHHHHHH
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT------RDGGGRERTKKEYTELA 336 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~t~~e~~~ll 336 (360)
.++|++++ ...+|++++++|||||++++..+..... .............. .......++.++|.++|
T Consensus 125 ~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 125 AMLHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNI-----KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp SCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTT-----HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred chhhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcch-----HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 99999875 4689999999999999999987643221 01111111111100 00012356899999999
Q ss_pred HHcCCceeeEEec
Q 018145 337 IAAGFKGINFASC 349 (360)
Q Consensus 337 ~~aGf~~~~~~~~ 349 (360)
+++||+++++...
T Consensus 198 ~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 198 EKQGFDVTYAALF 210 (279)
T ss_dssp HHHTEEEEEEEEE
T ss_pred HHcCCEEEEEEEe
Confidence 9999998877543
No 61
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.66 E-value=4.7e-16 Score=136.18 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=109.6
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAI 259 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~i 259 (360)
.+...++ ..++.+|||||||+|.++..+++... .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 3444454 45678999999999999999998732 38889998 8888877654 479999999987 55443 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC--CCCCchhh--------hhhhh-------hhHHHhhhcC
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE--IPEVSSAA--------RETSL-------LDVLLMTRDG 322 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~--~~~~~~~~--------~~~~~-------~~~~~~~~~~ 322 (360)
++..++|++++ ...+|++++++|||||++++.++.... .....+.. ..... ..+ .....
T Consensus 112 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 187 (243)
T 3bkw_A 112 YSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDW--LAKGV 187 (243)
T ss_dssp EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTH--HHHSC
T ss_pred EEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeee--ccCce
Confidence 99999999874 568999999999999999998753210 00000000 00000 000 00011
Q ss_pred CCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 323 GGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 323 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....++.++|.++|+++||+++++...
T Consensus 188 ~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 188 VKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 223368999999999999999998764
No 62
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.66 E-value=2e-16 Score=139.97 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=110.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEe
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILM 261 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~ 261 (360)
.++..++ ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++++++.+|+.+ + +.. |+|++
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 4556565 56678999999999999999999999999999999 8888887653 689999999987 5 433 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhH--HHhhh----cCCCccCCHHHHHHH
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV--LLMTR----DGGGRERTKKEYTEL 335 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~t~~e~~~l 335 (360)
+.++|++++ ...+|++++++|||||++++.++..... +........... +.... ......++.++|.++
T Consensus 102 ~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 102 NAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp ESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred eCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 999999874 5689999999999999999988643211 100000000000 00000 012345689999999
Q ss_pred HHHcCCce
Q 018145 336 AIAAGFKG 343 (360)
Q Consensus 336 l~~aGf~~ 343 (360)
|+++||++
T Consensus 177 l~~aGf~v 184 (259)
T 2p35_A 177 LSPKSSRV 184 (259)
T ss_dssp HGGGEEEE
T ss_pred HHhcCCce
Confidence 99999974
No 63
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.65 E-value=9.3e-16 Score=129.33 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=107.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEe
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILM 261 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~ 261 (360)
.++..+ .+++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455554 356789999999999999999987 568889998 8888877653 579999999988 55533 99999
Q ss_pred c-cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcC
Q 018145 262 K-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 340 (360)
Q Consensus 262 ~-~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 340 (360)
. .++|++++++...+|+++++.|+|||++++..+.. ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999988888899999999999999999865321 1146889999999999
Q ss_pred CceeeEEec
Q 018145 341 FKGINFASC 349 (360)
Q Consensus 341 f~~~~~~~~ 349 (360)
|+++++...
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999888644
No 64
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.65 E-value=2.6e-16 Score=138.94 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=110.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAI 259 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~i 259 (360)
.+...++ ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 4455554 446789999999999999999998654 8899998 8888877653 679999999987 65543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC--CC--------CCchhh-hhhhhhhH-----HHhhhcCC
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE--IP--------EVSSAA-RETSLLDV-----LLMTRDGG 323 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~--~~--------~~~~~~-~~~~~~~~-----~~~~~~~~ 323 (360)
++..++|++++ ...+|++++++|||||++++..+.... .. ...... .....+.. ........
T Consensus 113 ~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 99999999864 578999999999999999997543210 00 000000 00000000 00000001
Q ss_pred CccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 324 GRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 324 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
...++.++|.++|+++||+++++....
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecCC
Confidence 112499999999999999999998553
No 65
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.65 E-value=9.7e-16 Score=132.29 Aligned_cols=137 Identities=22% Similarity=0.180 Sum_probs=102.4
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhHH
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHC 273 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~ 273 (360)
+.+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +.+.. |+|++.+++|++++ .
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~ 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD--P 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--H
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC--H
Confidence 689999999999999988765 78887 8888887765 79999999987 55543 99999999999874 4
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 274 LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 274 ~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..+|++++++|+|||++++.++.... .............. .......++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNKEKSV-FYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTTTC-C-CSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHhcCcc-hhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 68999999999999999998864322 11100000000000 011234569999999999999999988755
No 66
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.64 E-value=1.3e-15 Score=134.96 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=103.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~~vl 265 (360)
..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 568889998 7888776542 689999999987 55543 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcC---CCccCCHHHHHHHHHHcCCc
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG---GGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~e~~~ll~~aGf~ 342 (360)
|++++ ...+|++++++|||||++++. ...+. ..........+..+....... ....++.++|.++|+++||+
T Consensus 115 ~~~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPD--WPKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTT--HHHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCC--HHHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 99874 468999999999999999998 22211 011000111111111111010 11245788999999999999
Q ss_pred eeeEE
Q 018145 343 GINFA 347 (360)
Q Consensus 343 ~~~~~ 347 (360)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 77653
No 67
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.64 E-value=7.8e-16 Score=138.32 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=111.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C-CCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VPEG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~-~~~~ 256 (360)
.++..++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + .+..
T Consensus 60 ~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 60 RVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 4555554 23679999999999999999988 668999998 8888877653 579999999987 3 3433
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-------cCCCccC
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-------DGGGRER 327 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 327 (360)
|+|++..++||+++. ..+|++++++|||||++++.++...... ................ ......+
T Consensus 136 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (285)
T 4htf_A 136 PVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYPR 210 (285)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCCB
T ss_pred CceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCCC
Confidence 999999999999854 6899999999999999999887543210 0000000001110000 0122456
Q ss_pred CHHHHHHHHHHcCCceeeEEecC
Q 018145 328 TKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
+.++|.++|+++||+++++....
T Consensus 211 ~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 211 DPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEES
T ss_pred CHHHHHHHHHHCCCceeeeeeEE
Confidence 89999999999999999887654
No 68
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.64 E-value=7.1e-16 Score=135.16 Aligned_cols=162 Identities=11% Similarity=0.083 Sum_probs=111.4
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cEEEecc-cccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKW-ILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~i~~~~-vlh~ 267 (360)
++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999988 467999998 8888877653 279999999987 55544 9999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEEEeeecCCC----CCCch---hhhhh-hh----------hhHHHhhhcC------
Q 018145 268 WD-DDHCLRILKNCYKAVPGNGKVIVMNSIVPEI----PEVSS---AARET-SL----------LDVLLMTRDG------ 322 (360)
Q Consensus 268 ~~-~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~----~~~~~---~~~~~-~~----------~~~~~~~~~~------ 322 (360)
++ +++...+|++++++|||||++++..+..... +.... ..... .+ ..+.+.....
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 84 3678899999999999999999844321100 00000 00000 00 0000000000
Q ss_pred ----CCccCCHHHHHHHHHHcCCceeeEEec--------CCceeEEEEeC
Q 018145 323 ----GGRERTKKEYTELAIAAGFKGINFASC--------VCNLYIMEFFK 360 (360)
Q Consensus 323 ----~~~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~k 360 (360)
..+.++.++|.++|+++||+++++... .+...+++++|
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 123469999999999999999999754 13444666665
No 69
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=129.47 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=101.6
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEec
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMK 262 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~ 262 (360)
..++..+....++.+|||||||+|.++..+. .+++++|+... +++++.+|+.+ +.+.+ |+|++.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3455555434566899999999999988773 57888887222 57899999988 56543 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.++|+ + +...+|++++++|+|||++++.+.... ..+.++|.++++++||+
T Consensus 123 ~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred hhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 99984 3 457899999999999999999875321 11788999999999999
Q ss_pred eeeEEecCCceeEEEEeC
Q 018145 343 GINFASCVCNLYIMEFFK 360 (360)
Q Consensus 343 ~~~~~~~~~~~~vi~~~k 360 (360)
+++.........+++++|
T Consensus 173 ~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEECCSTTCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEe
Confidence 988776666666777654
No 70
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=141.57 Aligned_cols=145 Identities=14% Similarity=0.230 Sum_probs=104.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------------------------------------
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------------------------ 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------ 239 (360)
++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 568999999999999999999999999999999 8888776542
Q ss_pred ----------------------------CCcEEEecCCCCCC------CC-C-cEEEeccccccC----ChhHHHHHHHH
Q 018145 240 ----------------------------AGVEHVGGNMFESV------PE-G-DAILMKWILHCW----DDDHCLRILKN 279 (360)
Q Consensus 240 ----------------------------~~v~~~~~d~~~~~------~~-~-D~i~~~~vlh~~----~~~~~~~~L~~ 279 (360)
.+|+|+.+|+.... +. . |+|++..+++|+ +++...++|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998632 22 3 999999999665 67788899999
Q ss_pred HHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH--cCCceeeEEec
Q 018145 280 CYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA--AGFKGINFASC 349 (360)
Q Consensus 280 i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 349 (360)
++++|||||+|++....+......... ........ .......+++.++|.+ +||+.++++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~--~~~~~~~~------~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTL--TETIYKNY------YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTS--CHHHHHHH------HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcc--cHHHHhhh------hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 999999999999854322110000000 00011100 1112346889999999 99998888765
No 71
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.63 E-value=2e-15 Score=127.89 Aligned_cols=141 Identities=11% Similarity=0.124 Sum_probs=109.4
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC-cE
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~-D~ 258 (360)
+++.++ ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+
T Consensus 24 l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~ 100 (199)
T 2xvm_A 24 VLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDF 100 (199)
T ss_dssp HHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEE
T ss_pred HHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceE
Confidence 344444 445679999999999999999987 568999998 8888877642 379999999987 55434 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
|++..++|++++++...+|++++++|||||++++++...+...... ......++.+++.++|++
T Consensus 101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 164 (199)
T 2xvm_A 101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYEG 164 (199)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhcC
Confidence 9999999999988889999999999999999999887664421100 012234578899999986
Q ss_pred cCCceeeEEec
Q 018145 339 AGFKGINFASC 349 (360)
Q Consensus 339 aGf~~~~~~~~ 349 (360)
|++++....
T Consensus 165 --f~~~~~~~~ 173 (199)
T 2xvm_A 165 --WERVKYNED 173 (199)
T ss_dssp --SEEEEEECC
T ss_pred --CeEEEeccc
Confidence 998887543
No 72
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.62 E-value=2.1e-15 Score=132.05 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=80.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cEEEecc-ccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKW-ILH 266 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~i~~~~-vlh 266 (360)
++..+|||||||+|.++..+++. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 34589999999999999999887 68999998 8888877653 479999999987 55544 9999986 999
Q ss_pred cC-ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 267 CW-DDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 267 ~~-~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|+ +.++...+|++++++|||||++++..
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 98 45677899999999999999999743
No 73
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.62 E-value=6.8e-16 Score=135.54 Aligned_cols=146 Identities=12% Similarity=0.053 Sum_probs=107.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCC-------CcEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE-------GDAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~-------~D~i~~~ 262 (360)
..++.+|||||||+|.++..+++.++ +++++|+ +.+++.++++ .+++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999988 6788887 8888877543 479999999988 3321 4999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhh-------hhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET-------SLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
.++|++++++...+|++++++|||||++++.+...+.. ....... ......+.. ......++.+++.++
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 207 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI---DFFNSLLEKYGQLPYELLLVMEH-GIRPGIFTAEDIELY 207 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHH---HHHHHHHHHHSSCCHHHHHHHTT-TCCCCCCCHHHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcccc---HHHHHHHhCCCCCchhhhhcccc-CCCCCccCHHHHHHH
Confidence 99999998888999999999999999999999865421 0000000 000000000 001123589999999
Q ss_pred HHHcCCceeeEEe
Q 018145 336 AIAAGFKGINFAS 348 (360)
Q Consensus 336 l~~aGf~~~~~~~ 348 (360)
| +||+++....
T Consensus 208 ~--aGf~~~~~~~ 218 (245)
T 3ggd_A 208 F--PDFEILSQGE 218 (245)
T ss_dssp C--TTEEEEEEEC
T ss_pred h--CCCEEEeccc
Confidence 9 9999887643
No 74
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.61 E-value=3.2e-16 Score=135.60 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=109.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC-----CC-C-CcE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-----VP-E-GDA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-----~~-~-~D~ 258 (360)
.++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++..+|+.+. .+ . .|+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4445454 345689999999999999999988 568999998 88999888778888998887652 22 2 299
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc-----CCCccCCHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD-----GGGRERTKKEYT 333 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~t~~e~~ 333 (360)
|++..++| .+ +...+|++++++|||||++++.++........... ..+......... .....++.++|.
T Consensus 120 v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 44 44689999999999999999998765432211000 000000000000 011345899999
Q ss_pred HHHHHcCCceeeEEe
Q 018145 334 ELAIAAGFKGINFAS 348 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~ 348 (360)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999999875
No 75
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.61 E-value=1.8e-15 Score=133.51 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=85.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 272 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~ 272 (360)
...+|||||||+|.++..+++.+ .+++++|+ +.+++.|++.++|+++.+|+.+ +++++ |+|++..++|+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-- 114 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-- 114 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH--
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH--
Confidence 45799999999999999999886 46888888 8999999998999999999988 77765 99999999998763
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.+++++++|+|||||+|+++....+
T Consensus 115 -~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 -DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 4689999999999999999887554
No 76
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.60 E-value=5.4e-16 Score=132.67 Aligned_cols=151 Identities=7% Similarity=-0.044 Sum_probs=106.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~~vl 265 (360)
..++.+|||||||+|..+..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 455789999999999985555544 4678999998 8888877643 579999999988 66543 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
||++.++...++++++++|||||++++.++..++.............+.............++.+++.++|.++||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99987888999999999999999999999876542111000000000000000000012456899999999999987655
Q ss_pred E
Q 018145 346 F 346 (360)
Q Consensus 346 ~ 346 (360)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 4
No 77
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.59 E-value=5.4e-15 Score=128.07 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=109.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC---CCCCC--cEE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAI 259 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~~--D~i 259 (360)
..+++.++ .++.+|||||||+|.++..+++. + .+++++|+ +.+++.+++.. .++..+|+.+ +.+.. |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555554 46789999999999999999988 4 88999998 88888876543 4788999875 33333 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh---------cCCCccCCHH
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR---------DGGGRERTKK 330 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~t~~ 330 (360)
++..++||+++. ..+|+++++.|+|||++++..+..... . ....+....+ ......++.+
T Consensus 98 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (230)
T 3cc8_A 98 IFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI------S---VLAPLLAGNWTYTEYGLLDKTHIRFFTFN 166 (230)
T ss_dssp EEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH------H---HHHHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred EECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH------H---HHHHHhcCCceeccCCCCCcceEEEecHH
Confidence 999999998854 589999999999999999987653220 0 0001000000 0112456899
Q ss_pred HHHHHHHHcCCceeeEEecC
Q 018145 331 EYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~ 350 (360)
+|.++++++||+++++....
T Consensus 167 ~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 167 EMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEEecc
Confidence 99999999999998887643
No 78
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.6e-15 Score=134.27 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=101.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCC--------CCCcEEEecCCCC-CCCC------C--
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-SVPE------G-- 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~~~------~-- 256 (360)
.++.+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8899999999 888887754 3689999999988 5444 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-cCC--CccCCHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-DGG--GRERTKKEYT 333 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~t~~e~~ 333 (360)
|+|++..++|++ +...+|+++++.|||||+|++.+...+.....+. ....+.-..... ..+ ...+..+.+.
T Consensus 115 D~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~p~~~~~~ 188 (299)
T 3g5t_A 115 DMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPE---FDDLMIEVPYGKQGLGPYWEQPGRSRLR 188 (299)
T ss_dssp EEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGG---GTTHHHHHHHCTTTTGGGSCTTHHHHHH
T ss_pred eEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHH---HHHHHHHhccCcccccchhhchhhHHHH
Confidence 999999999998 4568999999999999999996544322111111 111111111000 001 1113566789
Q ss_pred HHHHHcCCc
Q 018145 334 ELAIAAGFK 342 (360)
Q Consensus 334 ~ll~~aGf~ 342 (360)
++++++||.
T Consensus 189 ~~l~~~gfp 197 (299)
T 3g5t_A 189 NMLKDSHLD 197 (299)
T ss_dssp TTTTTCCCC
T ss_pred HhhhccCCC
Confidence 999999994
No 79
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.58 E-value=3.7e-15 Score=134.46 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=96.0
Q ss_pred CCcceEEEEcCCcchHHH----HHHhhCCCCeE--EEecc-hhHHHhCCCC-------CCcEE--EecCCCC-C------
Q 018145 196 QNVERLVDVGGGFGVTLS----MITSKYPQIKA--VNFDL-PHVVQDAPSY-------AGVEH--VGGNMFE-S------ 252 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~~v~~--~~~d~~~-~------ 252 (360)
.++.+|||||||+|.++. .++..+|++++ +++|. +.|++.++++ .++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 456799999999997654 44556688854 99998 8888876532 24444 4555433 2
Q ss_pred CCC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc--CCCccCC
Q 018145 253 VPE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD--GGGRERT 328 (360)
Q Consensus 253 ~~~-~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~t 328 (360)
++. . |+|++++++||+++. .++|++++++|||||++++.+..... ... ..+... ..... .....++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~--~~~~~~-~~~~~~~~~~~~~~ 200 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSS-----GWD--KLWKKY-GSRFPQDDLCQYIT 200 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTS-----HHH--HHHHHH-GGGSCCCTTCCCCC
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCCc-----cHH--HHHHHH-HHhccCCCcccCCC
Confidence 223 2 999999999999854 67899999999999999999754211 111 111111 10000 0124568
Q ss_pred HHHHHHHHHHcCCceeeEE
Q 018145 329 KKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~ 347 (360)
.++|.++|+++||+.+...
T Consensus 201 ~~~~~~~l~~aGf~~~~~~ 219 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYECYD 219 (292)
T ss_dssp HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHCCCceEEEE
Confidence 9999999999999987643
No 80
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.58 E-value=8.7e-15 Score=128.89 Aligned_cols=132 Identities=10% Similarity=-0.021 Sum_probs=103.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------------------CCCcEEEecCCCC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMFE 251 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~d~~~ 251 (360)
.++.+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ ..+|+++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 45689999999999999999987 458999998 888887632 1479999999998
Q ss_pred -CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccC
Q 018145 252 -SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER 327 (360)
Q Consensus 252 -~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (360)
+.+ .. |+|++..+||++++++...++++++++|||||+++++....+... . .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-----------~-------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-----------H-------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-----------C-------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-----------C-------CCCCCCC
Confidence 543 33 999999999999988888999999999999999987765543210 0 0011125
Q ss_pred CHHHHHHHHHHcCCceeeEEe
Q 018145 328 TKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~ 348 (360)
+.+++.++|++ +|+++.+..
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 88999999987 599877654
No 81
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.57 E-value=3.4e-15 Score=132.39 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=104.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----C-----------------------------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A----------------------------- 240 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~----------------------------- 240 (360)
..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. +
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 35678999999999999998888765 57899998 7888776432 1
Q ss_pred --Cc-EEEecCCCC-CC-CC---C--cEEEeccccccCCh--hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh
Q 018145 241 --GV-EHVGGNMFE-SV-PE---G--DAILMKWILHCWDD--DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308 (360)
Q Consensus 241 --~v-~~~~~d~~~-~~-~~---~--D~i~~~~vlh~~~~--~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~ 308 (360)
++ ++..+|+.+ .. +. . |+|++..++|++++ ++...+|++++++|||||+|++.+...... .
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-----~-- 205 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-----Y-- 205 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E--
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-----E--
Confidence 17 899999987 22 33 3 99999999995443 367899999999999999999998543210 0
Q ss_pred hhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 309 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
. ..+ ........+.++|.++|+++||+++++...+
T Consensus 206 -~-~~~-----~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 -M-IGE-----QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -E-ETT-----EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -E-cCC-----ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0 000 0001234588999999999999999887654
No 82
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.56 E-value=4.8e-14 Score=123.90 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=102.5
Q ss_pred CCcceEEEEcCCc--chHHHHH-HhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---C--C---CC-
Q 018145 196 QNVERLVDVGGGF--GVTLSMI-TSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---V--P---EG- 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~--~---~~- 256 (360)
.+..+|||||||+ +..+..+ .+..|+.+++++|. |.|++.|+++ .+++|+.+|+.+. + + ..
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 4568999999997 3344444 45679999999999 9999998753 3699999999872 1 1 11
Q ss_pred c-----EEEeccccccCChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHH
Q 018145 257 D-----AILMKWILHCWDDDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 330 (360)
Q Consensus 257 D-----~i~~~~vlh~~~~~~-~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 330 (360)
| +|+++.+|||+++++ ...+|++++++|+|||+|++.+.+.+..+ . ........+... ......|+.+
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p--~---~~~~~~~~~~~~-g~p~~~rs~~ 230 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP--Q---EVGRVAREYAAR-NMPMRLRTHA 230 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH--H---HHHHHHHHHHHT-TCCCCCCCHH
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH--H---HHHHHHHHHHhc-CCCCccCCHH
Confidence 4 688999999999865 57899999999999999999998754321 0 111122222211 1134568999
Q ss_pred HHHHHHHHcCCceee
Q 018145 331 EYTELAIAAGFKGIN 345 (360)
Q Consensus 331 e~~~ll~~aGf~~~~ 345 (360)
++.++|. ||++++
T Consensus 231 ei~~~f~--Glelve 243 (277)
T 3giw_A 231 EAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHTTT--TSEECT
T ss_pred HHHHHhC--CCcccC
Confidence 9999995 998654
No 83
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.55 E-value=1.2e-15 Score=137.56 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=86.5
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCC-C---
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE-S--- 252 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~-~--- 252 (360)
+...++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.++++ .++.+..+|+.+ +
T Consensus 49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHH-HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHhc-ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 334343 4567899999999999999999984 48899998 8888877531 468899999887 4
Q ss_pred CCCC--cEEEec-cccccCCh-----hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 253 VPEG--DAILMK-WILHCWDD-----DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 253 ~~~~--D~i~~~-~vlh~~~~-----~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
++.. |+|++. +++||+++ ++..++|++++++|||||++++..+.
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4443 999998 89999987 66889999999999999999987653
No 84
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.55 E-value=1.7e-15 Score=134.60 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=98.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------------------------------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------------------- 239 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------------------- 239 (360)
..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 4567899999999998776555442 236889998 8888866431
Q ss_pred -CCcE-EEecCCCCC--CC---C--CcEEEeccccccCC--hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh
Q 018145 240 -AGVE-HVGGNMFES--VP---E--GDAILMKWILHCWD--DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308 (360)
Q Consensus 240 -~~v~-~~~~d~~~~--~~---~--~D~i~~~~vlh~~~--~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~ 308 (360)
.++. ++.+|+.+. ++ . .|+|+++.+||+.. .++...+|++++++|||||+|++.+...... .
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-----~-- 204 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-----Y-- 204 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E--
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-----c--
Confidence 0133 889999873 21 2 39999999999853 2567789999999999999999997643210 0
Q ss_pred hhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 309 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
. .. ........++.++|.++|+++||+++++...
T Consensus 205 -~--~g----~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 205 -M--VG----KREFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp -E--ET----TEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -e--eC----CeEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0 00 0000122358999999999999999888754
No 85
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.55 E-value=1.9e-13 Score=120.22 Aligned_cols=106 Identities=19% Similarity=0.328 Sum_probs=84.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~ 258 (360)
.++.... ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 3444443 355689999999999999999987 568999998 8888877643 369999999987 55544 99
Q ss_pred EEec-cccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 259 ILMK-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 259 i~~~-~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|++. ..+++++.++...+|++++++|||||++++..+
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 9986 566777777889999999999999999987543
No 86
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.54 E-value=2.4e-14 Score=129.18 Aligned_cols=154 Identities=12% Similarity=0.014 Sum_probs=108.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CC-CCC--cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SV-PEG--DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~-~~~--D~i~~~ 262 (360)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ +. +.. |+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998776 4568999998 8888877643 358999999988 55 333 999999
Q ss_pred ccccc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC--------CCc----------hhhh-hhhhhhHHHhhhc
Q 018145 263 WILHC--WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP--------EVS----------SAAR-ETSLLDVLLMTRD 321 (360)
Q Consensus 263 ~vlh~--~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~--------~~~----------~~~~-~~~~~~~~~~~~~ 321 (360)
.++|+ .+.++...+|++++++|||||++++..+...... ... .... ....+.+......
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 99998 5667788999999999999999999876432100 000 0000 0000000000000
Q ss_pred --CCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 322 --GGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 322 --~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.....++.++|.++++++||+++++...
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 0123468899999999999999988754
No 87
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.53 E-value=1.1e-14 Score=137.84 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=108.7
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC------CCC-C
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE------SVP-E 255 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~------~~~-~ 255 (360)
....+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++......+.. +++ .
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 3456666665 567789999999999999999987 458999998 8888888765 34443332221 122 2
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
.|+|++.+++||++ +...+|++++++|||||++++..+..... . ....+... ...+...++.++|.+
T Consensus 171 ~fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----~----~~~~~~~~-~~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 171 PANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDI-----V----AKTSFDQI-FDEHFFLFSATSVQG 238 (416)
T ss_dssp CEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHH-----H----HHTCGGGC-STTCCEECCHHHHHH
T ss_pred CEEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHh-----h----hhcchhhh-hhhhhhcCCHHHHHH
Confidence 39999999999998 45789999999999999999976543210 0 00000000 012445679999999
Q ss_pred HHHHcCCceeeEEecC
Q 018145 335 LAIAAGFKGINFASCV 350 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~ 350 (360)
+++++||+++++...+
T Consensus 239 ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 239 MAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCEEEEEEEcc
Confidence 9999999999998865
No 88
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.53 E-value=3.3e-14 Score=127.71 Aligned_cols=140 Identities=10% Similarity=0.119 Sum_probs=107.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~ 258 (360)
.+++.++ ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++++..+|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 3444444 346789999999999999999988 558899998 8888877643 279999999988 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
|++..++||++++....+|+++++.|||||+++++......+...+ ......++.+++.+++++
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC
Confidence 9999999999988889999999999999999998876654321110 012234577888888865
Q ss_pred cCCceeeEE
Q 018145 339 AGFKGINFA 347 (360)
Q Consensus 339 aGf~~~~~~ 347 (360)
|+++...
T Consensus 252 --~~~~~~~ 258 (286)
T 3m70_A 252 --WEFLEYN 258 (286)
T ss_dssp --SEEEEEE
T ss_pred --CEEEEEE
Confidence 8887764
No 89
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.53 E-value=4.2e-15 Score=127.85 Aligned_cols=100 Identities=13% Similarity=0.213 Sum_probs=84.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCCCCCC-C-cEEEecccccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPE-G-DAILMKWILHC 267 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~~~-~-D~i~~~~vlh~ 267 (360)
..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+..+. . |+|++.+++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999985 47888888 778877654 25799999999883343 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 268 WDD-DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 268 ~~~-~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+++ +...++|++++++|||||++++..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 986 55678999999999999999997763
No 90
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.52 E-value=3.7e-14 Score=120.54 Aligned_cols=133 Identities=8% Similarity=0.052 Sum_probs=100.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~ 267 (360)
+. +|||||||+|.++..+++. +.+++++|. +.+++.+++. .++++..+|+.+ +.+.. |+|++. +.+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 44 9999999999999999887 568999998 8888877653 379999999988 55543 999985 345
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
++.++...+|++++++|||||++++.++...... . .... . ......++.+++.++|+ ||+++++.
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~--~~~~---~-~~~~~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------Y--NTGG---P-KDLDLLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------G--TSCC---S-SSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc-------C--CCCC---C-CcceeecCHHHHHHHhc--CceEEEEE
Confidence 5777888999999999999999999987643210 0 0000 0 00123569999999999 99998876
Q ss_pred ec
Q 018145 348 SC 349 (360)
Q Consensus 348 ~~ 349 (360)
..
T Consensus 170 ~~ 171 (202)
T 2kw5_A 170 NL 171 (202)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 91
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.52 E-value=2.3e-13 Score=118.27 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=100.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC----CCCCCcEEEecCCCC-----CCCCC-cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFE-----SVPEG-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~d~~~-----~~~~~-D~i~~~~ 263 (360)
..++.+|||||||+|.++..+++.+|..+++++|. +.+++.+ +..+++.++.+|+.+ +.+.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999988889999998 7777543 344789999999976 12233 9998
Q ss_pred ccccCChh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 264 ILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 264 vlh~~~~~-~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
|++++. ....+++++++.|||||++++. ........... .. ....+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~-------~~-----------~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD-------PK-----------EIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC-------HH-----------HHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC-------HH-----------HhhHHHHH-HHHHCCCE
Confidence 444433 3467799999999999999997 22211111000 00 01236677 89999999
Q ss_pred eeeEEecCCc---eeEEEEeC
Q 018145 343 GINFASCVCN---LYIMEFFK 360 (360)
Q Consensus 343 ~~~~~~~~~~---~~vi~~~k 360 (360)
.+++.+...+ +.++.++|
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEE
T ss_pred EEEEEccCCCccceEEEEEEe
Confidence 9999887654 66666654
No 92
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.52 E-value=3.2e-13 Score=111.67 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=96.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCC--cEEEeccccccCChh-
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEG--DAILMKWILHCWDDD- 271 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~--D~i~~~~vlh~~~~~- 271 (360)
.++.+|||||||+|.++..+++.. +++++|+ +.+++. .++++++.+|+.++.+.. |+|+++..+|+.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 345799999999999999999987 8899998 888887 467999999999865533 999999988865543
Q ss_pred ------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 272 ------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 272 ------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+...+++++.+.+ |||++++.+... .+.+++.++++++||+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEE
Confidence 3467899999999 999999987421 1356788999999999888
Q ss_pred EEecC
Q 018145 346 FASCV 350 (360)
Q Consensus 346 ~~~~~ 350 (360)
+....
T Consensus 146 ~~~~~ 150 (170)
T 3q87_B 146 LKVRK 150 (170)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 87654
No 93
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.51 E-value=8.3e-15 Score=131.92 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=97.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------------------C---------------
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------------A--------------- 240 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~--------------- 240 (360)
++.+|||||||+|.+. .++...+..+++++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3444445668999999 8888765431 0
Q ss_pred -CcEEEecCCCC--C-----CCC--CcEEEeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh
Q 018145 241 -GVEHVGGNMFE--S-----VPE--GDAILMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308 (360)
Q Consensus 241 -~v~~~~~d~~~--~-----~~~--~D~i~~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~ 308 (360)
.++++.+|+.+ + ++. .|+|++..+||+++++ +...+|++++++|||||+|++.+..... ..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-----~~-- 222 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-----WY-- 222 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-----EE--
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-----eE--
Confidence 14566678876 2 223 3999999999996533 6789999999999999999998644321 00
Q ss_pred hhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 309 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.. .+ .......++.++|.++|+++||+++++...
T Consensus 223 -~~-~~-----~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 223 -LA-GE-----ARLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp -EE-TT-----EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -Ec-CC-----eeeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00 00 000123458999999999999999887643
No 94
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.50 E-value=3.1e-13 Score=115.14 Aligned_cols=124 Identities=13% Similarity=0.139 Sum_probs=98.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC---CC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---EG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~---~~ 256 (360)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 3445555 66778999999999999999999999999999999 8888887653 579999999977433 34
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++...++ +...+++++++.|||||++++...... +.+++.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------------~~~~~~~~l 155 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTLD-----------------------------TLTKAVEFL 155 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBHH-----------------------------HHHHHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecccc-----------------------------cHHHHHHHH
Confidence 9999988776 346799999999999999999664211 245677888
Q ss_pred HHcCCceeeE
Q 018145 337 IAAGFKGINF 346 (360)
Q Consensus 337 ~~aGf~~~~~ 346 (360)
+++|| .+++
T Consensus 156 ~~~g~-~~~~ 164 (204)
T 3e05_A 156 EDHGY-MVEV 164 (204)
T ss_dssp HHTTC-EEEE
T ss_pred HHCCC-ceeE
Confidence 99998 4433
No 95
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.49 E-value=9.5e-14 Score=118.86 Aligned_cols=136 Identities=17% Similarity=0.104 Sum_probs=98.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCC-eEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAIL 260 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~ 260 (360)
.++..+. .++.+|||||||+|.++..+ +. +++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3444443 36789999999999998877 44 8899998 8888877654 689999999988 66553 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh--hcCCCccCCHHHHHHHHHH
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT--RDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~e~~~ll~~ 338 (360)
+.+++||+++ ..++|++++++|||||++++.++.... .... ......... .......++.+++.++|+
T Consensus 101 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~s~~~l~~~l~- 170 (211)
T 2gs9_A 101 LFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALS-----PWAA--LYRRLGEKGVLPWAQARFLAREDLKALLG- 170 (211)
T ss_dssp EESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTS-----HHHH--HHHHHHHTTCTTGGGCCCCCHHHHHHHHC-
T ss_pred EcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcC-----cHHH--HHHHHhhccCccccccccCCHHHHHHHhc-
Confidence 9999999874 468999999999999999998875432 1110 000000000 001234579999999999
Q ss_pred cC
Q 018145 339 AG 340 (360)
Q Consensus 339 aG 340 (360)
|
T Consensus 171 -G 171 (211)
T 2gs9_A 171 -P 171 (211)
T ss_dssp -S
T ss_pred -C
Confidence 7
No 96
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.49 E-value=3.3e-13 Score=120.59 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=108.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC-C-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~-~- 256 (360)
..+++.++ .++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++.+|+.++.+. .
T Consensus 100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f 177 (276)
T 2b3t_A 100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF 177 (276)
T ss_dssp HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence 34444443 3567999999999999999999999999999999 8888877653 4799999999885533 3
Q ss_pred cEEEec-------------cccccCCh----------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhh
Q 018145 257 DAILMK-------------WILHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 313 (360)
Q Consensus 257 D~i~~~-------------~vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~ 313 (360)
|+|+++ .++++.|. +....+++.+.+.|||||++++...
T Consensus 178 D~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 239 (276)
T 2b3t_A 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------------ 239 (276)
T ss_dssp EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------------------
T ss_pred cEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------------
Confidence 999997 34444331 3457899999999999999998521
Q ss_pred hHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 314 DVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 314 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
..+.+++.++++++||+.+++.... +...++.++|
T Consensus 240 ------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 0135678999999999988887654 4455666553
No 97
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.49 E-value=1.4e-13 Score=118.44 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=96.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHh----CCC------CCCcEEEecCCCC-CCCCC-cEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD----APS------YAGVEHVGGNMFE-SVPEG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~v~~~~~d~~~-~~~~~-D~i~~ 261 (360)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +.+.. |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999999 776664 222 2579999999988 55543 66653
Q ss_pred cc---ccc--cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 262 KW---ILH--CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 262 ~~---vlh--~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
.. .+| ++++. ..+|++++++|||||++++........+.. ..... .......+..+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSV------PEVGE-----HPEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBC------GGGTT-----CCCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEeccccccccc------ccccc-----CCccchHHHHHHHHHHH
Confidence 22 221 33322 678999999999999999954322111000 00000 00011112345588899
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||++.++....
T Consensus 172 ~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 172 AEAGWKLADCRYLE 185 (218)
T ss_dssp HHTTEEEEEEEEEC
T ss_pred HHcCCCceeeeccc
Confidence 99999998886654
No 98
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.48 E-value=2.4e-13 Score=117.71 Aligned_cols=146 Identities=12% Similarity=0.005 Sum_probs=91.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc--hhHHHhC---CCC------CCcEEEecCCCCC-CCCCcEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDA---PSY------AGVEHVGGNMFES-VPEGDAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~~------~~v~~~~~d~~~~-~~~~D~i~~~~ 263 (360)
.++.+|||||||+|.++..+++..|+.+++++|+ +.+++.| +++ ++++++.+|+.+- ....|+|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4568999999999999999999899999999998 3454444 543 5799999998763 21125554444
Q ss_pred ccccCChh------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 264 ILHCWDDD------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 264 vlh~~~~~------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+.+.|+.. +...+|++++++|||||++++........ .. ...... ..... .......+++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~-----~~~~~~--~~~~~-~~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EE-----AEIKKR--GLPLL-SKAYFLSEQYKAELS 173 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC----------------------C-CHHHHHSHHHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hh-----chhhhc--CCCCC-ChhhcchHHHHHHHH
Confidence 43333321 11468999999999999999955433321 00 000000 00000 000111235999999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||++.++...+
T Consensus 174 ~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 174 NSGFRIDDVKELD 186 (225)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HcCCCeeeeeecC
Confidence 9999988887654
No 99
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.48 E-value=1.2e-13 Score=117.71 Aligned_cols=129 Identities=12% Similarity=0.044 Sum_probs=103.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCCC-cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~~-D~i~~~~vlh~ 267 (360)
.++.+|||||||+|.++..+++ .+..+++++|+ +.+++.++++ .++++..+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999776 56779999998 8888877653 24999999998854444 99999887764
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
...+++++++.|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 46889999999999999999765421 35668899999999999988
Q ss_pred ecCCceeEEEEe
Q 018145 348 SCVCNLYIMEFF 359 (360)
Q Consensus 348 ~~~~~~~vi~~~ 359 (360)
...+...++.-+
T Consensus 184 ~~~~w~~~~~~~ 195 (205)
T 3grz_A 184 RAGRWIGLAISR 195 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred ccCCEEEEEEec
Confidence 876666666543
No 100
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.47 E-value=1e-13 Score=127.84 Aligned_cols=112 Identities=12% Similarity=0.175 Sum_probs=90.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC---------------CCCcEEEecCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 249 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d~ 249 (360)
..+++.+. ..++.+|||||||+|.++..++...+..+++++|+ +.+++.|++ ..+|+|+.+|+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 45566565 67889999999999999999999887777999999 666666543 25799999999
Q ss_pred CC-CCC----CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC
Q 018145 250 FE-SVP----EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP 301 (360)
Q Consensus 250 ~~-~~~----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~ 301 (360)
.+ +++ ..|+|+++++++ + ++....|+++++.|||||+|++.|.+.+.+.
T Consensus 242 ~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 242 LSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred cCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 98 553 359999987764 2 4567788999999999999999999887653
No 101
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.47 E-value=3.7e-13 Score=113.11 Aligned_cols=140 Identities=14% Similarity=0.238 Sum_probs=107.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C--CcEEEecCCCCCCCC-C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESVPE-G 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~d~~~~~~~-~ 256 (360)
.+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. . +++++.+|+.+..+. .
T Consensus 43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (194)
T 1dus_A 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCC
Confidence 4455555 556789999999999999999988 778999998 8888776542 3 499999999885443 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++...+|+ ..+....+++++++.|+|||++++..+... ...++.+.
T Consensus 120 ~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~ 169 (194)
T 1dus_A 120 YNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLAKY 169 (194)
T ss_dssp EEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHHHH
T ss_pred ceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHHHH
Confidence 99999988875 445678999999999999999999876321 01245666
Q ss_pred HHHcCCceeeEEecCCceeEEEEeC
Q 018145 336 AIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 336 l~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+++. |..+++.....+..++.++|
T Consensus 170 l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 170 MKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHH-hcceEEEecCCcEEEEEEee
Confidence 7776 66777777777777877765
No 102
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.45 E-value=2.3e-14 Score=125.18 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=91.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC---CCCCC--cEEEe---
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM--- 261 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~---~~~~~--D~i~~--- 261 (360)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++. .+++++.+|+.. +.+.. |.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45789999999999999999988764 6788888 8999988653 468888888754 34443 77754
Q ss_pred --ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 262 --KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 262 --~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
...++|++ +...++++++|+|||||+|++.+...... .....++ .......+.+...|.++
T Consensus 138 ~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhhc--chhhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 45555544 56789999999999999998865332110 0000000 00011245567788899
Q ss_pred CCceeeE
Q 018145 340 GFKGINF 346 (360)
Q Consensus 340 Gf~~~~~ 346 (360)
||+...+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9997554
No 103
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.45 E-value=3.3e-13 Score=116.41 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=95.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhC----CCCCCcEEEecCCCCC--CC---CC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFES--VP---EG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~d~~~~--~~---~~-D~i~~~ 262 (360)
++++.+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+ ++.+++..+.+|..++ .+ .. |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678999999999999999999987 48899999998 7777654 3457899999998762 12 22 888764
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
...| ++...+++++++.|||||+++|.......+ .. . .... ..++-.+.|+++||+
T Consensus 155 ~~~~----~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~----~-p~~~-~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 VAQP----EQAAIVVRNARFFLRDGGYMLMAIKARSID--------------VT----T-EPSE-VYKREIKTLMDGGLE 210 (233)
T ss_dssp CCCT----THHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HH----T-CCCH-HHHHHHHHHHHTTCC
T ss_pred ccCC----hhHHHHHHHHHHhccCCCEEEEEEecccCC--------------CC----C-ChHH-HHHHHHHHHHHCCCE
Confidence 3222 245678999999999999999976433211 00 0 0000 122345678899999
Q ss_pred eeeEEecCC
Q 018145 343 GINFASCVC 351 (360)
Q Consensus 343 ~~~~~~~~~ 351 (360)
.++.+...+
T Consensus 211 l~e~i~L~p 219 (233)
T 4df3_A 211 IKDVVHLDP 219 (233)
T ss_dssp EEEEEECTT
T ss_pred EEEEEccCC
Confidence 999988764
No 104
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.44 E-value=7.1e-14 Score=119.64 Aligned_cols=144 Identities=14% Similarity=0.051 Sum_probs=91.9
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCC-----CcEEEecCCCCCCC-----
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-----GVEHVGGNMFESVP----- 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-----~v~~~~~d~~~~~~----- 254 (360)
..+++.++...++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++.. +++++.+|+.++.+
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 34444444225678999999999999999999999999999999 88999887641 58888888877433
Q ss_pred -C-CcEEEecccccc------CChhHH------------------HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh
Q 018145 255 -E-GDAILMKWILHC------WDDDHC------------------LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308 (360)
Q Consensus 255 -~-~D~i~~~~vlh~------~~~~~~------------------~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~ 308 (360)
. .|+|+++..++. ++++.. ..++++++++|||||++++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----------
Confidence 2 399999644432 222211 678999999999999966655321
Q ss_pred hhhhhhHHHhhhcCCCccCCHHHHHHHHH--HcCCceeeEEecCC-ceeEEEE
Q 018145 309 ETSLLDVLLMTRDGGGRERTKKEYTELAI--AAGFKGINFASCVC-NLYIMEF 358 (360)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~~-~~~vi~~ 358 (360)
...+++.++++ +.||..+++..... ...++..
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~ 202 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAV 202 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEE
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEE
Confidence 02455777888 89999888877654 3344443
No 105
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.43 E-value=1.1e-12 Score=129.74 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=89.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCC------------CCCcEEEecCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFE- 251 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~- 251 (360)
.+++.+. ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ..+++++.+|+.+
T Consensus 712 ~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL 790 (950)
T 3htx_A 712 YALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF 790 (950)
T ss_dssp HHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC
T ss_pred HHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC
Confidence 3444444 3467899999999999999999998 5679999999 888887754 2569999999988
Q ss_pred CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 252 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 252 ~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+.+.+ |+|++..++||++++....+++++++.|||| .+++..+..
T Consensus 791 p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 791 DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 55433 9999999999999988888999999999999 777776543
No 106
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.41 E-value=4.2e-13 Score=118.10 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=80.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCC---CcEEEecCCCC----CCCC-C
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA---GVEHVGGNMFE----SVPE-G 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~---~v~~~~~d~~~----~~~~-~ 256 (360)
..++..++ ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.++++. .+.....++.. ..+. .
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 45556555 667889999999999999999987 457888998 88998876531 12222222211 1122 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++..++||++.++...++++++++| |||++++...
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999999999999888899999999999 9999998754
No 107
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.40 E-value=2.4e-12 Score=110.17 Aligned_cols=137 Identities=14% Similarity=0.139 Sum_probs=95.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhH----HHhCCCCCCcEEEecCCCCC-----CCCC-cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFES-----VPEG-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~d~~~~-----~~~~-D~i~~~~ 263 (360)
.+++.+|||||||+|.++..+++..++.+++++|+ +.+ .+.++...++.++.+|+.++ .++. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988778999998 654 45555456799999998762 2333 999986
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH----HHHHHHc
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY----TELAIAA 339 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~----~~ll~~a 339 (360)
+.+ .++...++++++++|||||+|++.-...+. + . ..+.+++ .+.++++
T Consensus 134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~---------~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKEKGEVVIMVKARSI--------------D---------S-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH--------------C---------T-TSCHHHHHHHHHHHHHTT
T ss_pred ccC---hhHHHHHHHHHHHHhCCCCEEEEEEecCCc--------------c---------c-cCCHHHHHHHHHHHHHhh
Confidence 332 234456699999999999999998432110 0 0 0112222 1237888
Q ss_pred CCceeeEEecCC---ceeEEEEeC
Q 018145 340 GFKGINFASCVC---NLYIMEFFK 360 (360)
Q Consensus 340 Gf~~~~~~~~~~---~~~vi~~~k 360 (360)
|++++.....+ .+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 99999988743 556776653
No 108
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.40 E-value=1.4e-13 Score=120.16 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=77.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC---CCCCC--cEEEe-cc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM-KW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~---~~~~~--D~i~~-~~ 263 (360)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.|+++ .+++++.+|+.+ +++++ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999966543 48899998 8888877642 468999999865 35443 99998 55
Q ss_pred c--cccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 264 I--LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 264 v--lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
. .+++.......++++++++|||||+|++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 33444445567899999999999999998754
No 109
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.40 E-value=6.4e-13 Score=110.34 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=81.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C-CcEEEecCCCCCCC---C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESVP---E 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~d~~~~~~---~ 255 (360)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. + ++ ++.+|..+.++ .
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 3444444 56778999999999999999999999999999999 8888877642 3 68 88898876433 2
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.|+|++..++|+ ..+++++++.|||||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 399999999987 4689999999999999998775
No 110
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.40 E-value=3.2e-13 Score=119.86 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=80.3
Q ss_pred CcceEEEEcCCcch----HHHHHHhhCC----CCeEEEecc-hhHHHhCCCC----------------------------
Q 018145 197 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 239 (360)
++.+|+|+|||+|. ++..+++.+| +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666677655 468899998 8888877542
Q ss_pred ---------CCcEEEecCCCC-CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 240 ---------AGVEHVGGNMFE-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 240 ---------~~v~~~~~d~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+|+|..+|+.+ +++ .. |+|+|.+++++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 258999999998 455 23 999999999999988889999999999999999988
No 111
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.39 E-value=4.8e-13 Score=114.48 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=84.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~ 267 (360)
.++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45689999999999999999998664 7888888 7787766542 579999999988 66543 99999998877
Q ss_pred CC-------------hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 268 WD-------------DDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 268 ~~-------------~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+. ..+...+|++++++|||||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 54 4466899999999999999999988644
No 112
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.37 E-value=7.2e-12 Score=108.41 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=98.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHH----hCCCCCCcEEEecCCCCC-----CCCC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFES-----VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~d~~~~-----~~~~-D~i~~~ 262 (360)
..++.+|||+|||+|.++..+++.. |+.+++++|. +.+++ .++..++++++.+|+.+. .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 6688999998 65444 444447899999999872 2333 999975
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.. .+.....+++++++.|||||++++. .........+ .......+++.++ .++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~------------------~~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK------------------EPEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS------------------CHHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC------------------ChhhhhHHHHHHH-Hhh-ce
Confidence 44 1233445699999999999999998 2221110000 0001135667777 777 99
Q ss_pred eeeEEecCCc---eeEEEEeC
Q 018145 343 GINFASCVCN---LYIMEFFK 360 (360)
Q Consensus 343 ~~~~~~~~~~---~~vi~~~k 360 (360)
.++.....++ +.++.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred eeeEeccCcccCCCEEEEEEe
Confidence 9998887654 66776654
No 113
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.37 E-value=8.8e-12 Score=107.69 Aligned_cols=141 Identities=17% Similarity=0.118 Sum_probs=95.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhH----HHhCCCCCCcEEEecCCCCC-----CCCC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFES-----VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~d~~~~-----~~~~-D~i~~~ 262 (360)
++++.+|||+|||+|.++..+++.. |..+++++|+ +.+ ++.++++.++.++.+|+..+ ..+. |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 5678999999999999999998874 6789999998 655 34454457899999999762 1223 999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
... + +....+++.+++.|||||+|++....... +. +..... ..++..+.|+++||+
T Consensus 154 ~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~--------------d~-----t~~~~e-~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSI--------------DV-----TKDPKE-IYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSSS-STTHHHHHHHHTTEE
T ss_pred CCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCc--------------cc-----CCCHHH-HHHHHHHHHHHCCCE
Confidence 543 2 23334556677799999999998432111 10 001111 223345677889999
Q ss_pred eeeEEecCCc---eeEEEEe
Q 018145 343 GINFASCVCN---LYIMEFF 359 (360)
Q Consensus 343 ~~~~~~~~~~---~~vi~~~ 359 (360)
+++.....++ +.++.++
T Consensus 210 ~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 210 TIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEECTTTCSSCEEEEEE
T ss_pred EEEEeccCCCcCceEEEEEE
Confidence 9999988543 6666554
No 114
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.36 E-value=2.6e-12 Score=111.39 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=98.0
Q ss_pred CCCcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC--CCCCC--cEEEecc
Q 018145 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE--SVPEG--DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~--~~~~~--D~i~~~~ 263 (360)
.+++.+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.. +.+.. |+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999986 778999998 8888877643 269999999643 44433 9999987
Q ss_pred ccccCChh-----------------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCcc
Q 018145 264 ILHCWDDD-----------------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 326 (360)
Q Consensus 264 vlh~~~~~-----------------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (360)
.+++.++. ....+++.+.+.|||||++++..+...
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence 76654432 136899999999999999999643210
Q ss_pred CCHHHHHHHHHHcCCceeeEEecCCc--eeEEEEe
Q 018145 327 RTKKEYTELAIAAGFKGINFASCVCN--LYIMEFF 359 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~~~~~~~--~~vi~~~ 359 (360)
...+++.+++++.||++..+....+. ..++.+.
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~ 218 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFF 218 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEE
T ss_pred hHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEe
Confidence 02456788999999987666544432 3355544
No 115
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=113.10 Aligned_cols=141 Identities=10% Similarity=0.018 Sum_probs=96.7
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hh----HHHhCCCCCCcEEEecCCCCC--CC---CC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFES--VP---EG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~~--~~---~~-D~i~~~ 262 (360)
+.++.+|||||||+|.++..+++.+ |..+++++|+ +. +++.++...+++++.+|+.+. .+ .. |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999998 54 445555457899999999872 22 23 999985
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.. ..+....+++++++.|||||++++.-......... ... .+...+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~---------~~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA----------SAE---------AVFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS----------CHH---------HHHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC----------CHH---------HHHHHH-HHHHHHCCCc
Confidence 44 23345667999999999999999943211000000 000 000123 5889999999
Q ss_pred eeeEEecCCc---eeEEEEe
Q 018145 343 GINFASCVCN---LYIMEFF 359 (360)
Q Consensus 343 ~~~~~~~~~~---~~vi~~~ 359 (360)
++++.....+ +.++.++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEE
T ss_pred eEEEEecCCccCCcEEEEEE
Confidence 9997766533 5555543
No 116
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.36 E-value=3.4e-12 Score=109.51 Aligned_cols=98 Identities=17% Similarity=0.265 Sum_probs=78.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC--cEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG--DAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~--D~i~~~~v 264 (360)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467999999999999999999999999999998 8888877642 579999999987 3 4443 99998865
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 265 LHCWDDD------HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 265 lh~~~~~------~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.++.... ....+++.++++|+|||++++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4422211 12478999999999999999854
No 117
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.36 E-value=1.5e-12 Score=109.04 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=75.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC--CCC-CC-cEEEec-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVP-EG-DAILMK- 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~--~~~-~~-D~i~~~- 262 (360)
.+++.+|||||||+|.++..+++. ..+++++|+ +.+++.|+++ ++++++..|+.+ ..+ .. |+|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999988 788999998 8888887653 579999977655 133 33 999876
Q ss_pred cccccC------ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 263 WILHCW------DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 263 ~vlh~~------~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
..+++- ..+....+|+++++.|||||++++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 333320 2245668899999999999999998754
No 118
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.34 E-value=7.6e-13 Score=114.62 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC--CCC-CC--cEEEeccccccC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE--SVP-EG--DAILMKWILHCW 268 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~~-~~--D~i~~~~vlh~~ 268 (360)
.++.+|||||||+|.++..+++. ..+++++|+ +.+++.++++ ++++++.+|+.+ +++ .+ |+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 45689999999999999999998 568999998 8888887653 689999999965 444 33 9999871
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
+...+|++++++|||||+++... ...+.+++.++++++||+.+++..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~~------------------------------~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYVG------------------------------PRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEEE------------------------------SSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEeC------------------------------CcCCHHHHHHHHHHCCCeEEEEEe
Confidence 23467999999999999999100 011345688888999998877654
No 119
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.34 E-value=8.1e-12 Score=106.37 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=92.7
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C-CcEEEecCCCCCC---CCC
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESV---PEG 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~d~~~~~---~~~ 256 (360)
++..+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. + +++++.+|+.+.. +..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 344444 567789999999999999999988 778999998 8888877643 3 7999999998732 234
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++...+ +.. +++.+++.|||||++++...... +..++.+++
T Consensus 124 D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~~-----------------------------~~~~~~~~l 167 (204)
T 3njr_A 124 EAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVTLE-----------------------------SETLLTQLH 167 (204)
T ss_dssp SEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEECSHH-----------------------------HHHHHHHHH
T ss_pred CEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEecCcc-----------------------------cHHHHHHHH
Confidence 999987754 123 89999999999999998664211 234567788
Q ss_pred HHcCCceeeEE
Q 018145 337 IAAGFKGINFA 347 (360)
Q Consensus 337 ~~aGf~~~~~~ 347 (360)
++.||++.++.
T Consensus 168 ~~~g~~i~~i~ 178 (204)
T 3njr_A 168 ARHGGQLLRID 178 (204)
T ss_dssp HHHCSEEEEEE
T ss_pred HhCCCcEEEEE
Confidence 88898877653
No 120
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.34 E-value=7.6e-13 Score=109.17 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=95.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCC-CCCC-cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES-VPEG-DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~-~~~~-D~i~~~~vlh~ 267 (360)
.++.+|||||||+|.++..++...|+.+++++|+ +.+++.++++ ...++...|.... .+.. |+|++..++|+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 4578999999999999999999999999999999 8999988753 1123334676653 3333 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
+ + +....+.++.++|+|||.++..+.-.=.. + +.+-.......|++.+ ...+.+++..
T Consensus 128 L-~-~~~~al~~v~~~L~pggvfISfptksl~G-r------------------~~gm~~~Y~~~~~~~~-~~~~~~~~~~ 185 (200)
T 3fzg_A 128 L-K-QQDVNILDFLQLFHTQNFVISFPIKSLSG-K------------------EKGMEENYQLWFESFT-KGWIKILDSK 185 (200)
T ss_dssp H-H-HTTCCHHHHHHTCEEEEEEEEEECCCCC---------------------CTTCCCCHHHHHHHHT-TTTSCEEEEE
T ss_pred h-h-hhHHHHHHHHHHhCCCCEEEEeChHHhcC-C------------------CcchhhhHHHHHHHhc-cCcceeeeee
Confidence 9 3 44566779999999999888777211111 0 1122223455676666 4566777776
Q ss_pred ecCCc
Q 018145 348 SCVCN 352 (360)
Q Consensus 348 ~~~~~ 352 (360)
..++.
T Consensus 186 ~~~nE 190 (200)
T 3fzg_A 186 VIGNE 190 (200)
T ss_dssp EETTE
T ss_pred eeCce
Confidence 66544
No 121
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.33 E-value=2.4e-12 Score=117.12 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------------CCcEEEecCCCC-C----CC--
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFE-S----VP-- 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~-~----~~-- 254 (360)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+ + ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 35689999999999999998874 5778999998 8888877542 268999999987 4 32
Q ss_pred C-C-cEEEeccccccC--ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 255 E-G-DAILMKWILHCW--DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 255 ~-~-D~i~~~~vlh~~--~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
. . |+|++..++|+. +.++...+|++++++|||||++++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 2 3 999999999987 3456789999999999999999998764
No 122
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.32 E-value=2.9e-12 Score=112.99 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=97.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---C--CcEEEecCCCCCCCC--CcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A--GVEHVGGNMFESVPE--GDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v~~~~~d~~~~~~~--~D~i~~~~vlh~ 267 (360)
.++.+|||+|||+|.++..+++..+ +++++|+ |.+++.++++ . .+++..+|+.+.++. .|+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4568999999999999999888765 8888888 8888877653 1 289999998764433 39999865443
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
....+++.+++.|||||++++.+.... +.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 456899999999999999999765321 25678899999999999987
Q ss_pred ecCCceeEEEEeC
Q 018145 348 SCVCNLYIMEFFK 360 (360)
Q Consensus 348 ~~~~~~~vi~~~k 360 (360)
...+-. .+.++|
T Consensus 243 ~~~~W~-~l~~~k 254 (254)
T 2nxc_A 243 AEGEWV-LLAYGR 254 (254)
T ss_dssp EETTEE-EEEEEC
T ss_pred ccCCeE-EEEEEC
Confidence 754432 344443
No 123
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.32 E-value=3.3e-12 Score=113.59 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=79.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCCcEEEeccccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEGDAILMKWILH 266 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~D~i~~~~vlh 266 (360)
.+++.+|||||||+|.++..++.+.++.+++++|+ |.+++.|+++ ++|+++.+|+.+ +....|+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 67889999999999988777677778999999999 9999988753 689999999987 42223999986542
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+ +..++++++++.|||||+|++.+.
T Consensus 199 --~--d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 199 --E--PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --S--CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --c--CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 456899999999999999999763
No 124
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.32 E-value=3.6e-12 Score=106.87 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=80.0
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC---CC
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP---EG 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~---~~ 256 (360)
++..+. ..++.+|||+|||+|.++..+++.. .+++++|. +.+++.+++. .++++..+|+.+..+ ..
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 344444 5667899999999999999999987 78899998 7788776542 579999999876333 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++..++++ ...+++.+++.|+|||++++...
T Consensus 102 D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 102 DIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp EEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 99999988764 36789999999999999998764
No 125
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.32 E-value=1.2e-12 Score=116.77 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=93.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~- 256 (360)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.++.+..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4455555 667789999999999999999998 78899999999 8787766432 47999999998865543
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++ ++++. ..+|+++.++|||||++++.++... ..+++.+.
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99998 34433 4789999999999999999874210 12345667
Q ss_pred HHHcCCceeeEEe
Q 018145 336 AIAAGFKGINFAS 348 (360)
Q Consensus 336 l~~aGf~~~~~~~ 348 (360)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7778888777765
No 126
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.31 E-value=1.5e-12 Score=117.68 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=99.4
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----C--------CcEEEecCCCC---------CCC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A--------GVEHVGGNMFE---------SVP 254 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--------~v~~~~~d~~~---------~~~ 254 (360)
++.+|||||||+|..+..+++. ...+++++|+ +.+++.|+++ . +++|...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999877766654 3468999999 8999988753 1 15687888732 233
Q ss_pred CC--cEEEeccccccC-ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC-----------C-chhhhhhhhh----hH
Q 018145 255 EG--DAILMKWILHCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-----------V-SSAARETSLL----DV 315 (360)
Q Consensus 255 ~~--D~i~~~~vlh~~-~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~-----------~-~~~~~~~~~~----~~ 315 (360)
.+ |+|++..++|+. ++++...+|++++++|||||++++..+....... . .....+.... +.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 33 999999999974 4456689999999999999999987763221000 0 0000000000 00
Q ss_pred --HHhhh--cCC--CccCCHHHHHHHHHHcCCceeeEEec
Q 018145 316 --LLMTR--DGG--GRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 316 --~~~~~--~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..... ... ....+.+++.++++++||+++.....
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00000 000 12457899999999999999888654
No 127
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.31 E-value=3.9e-12 Score=112.09 Aligned_cols=127 Identities=14% Similarity=0.164 Sum_probs=98.9
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~ 256 (360)
..++..+. ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++. ++++++.+|+.+.++..
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 667889999999999999999999 78999999999 8888887653 45999999998866543
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
|+|++. .++. ..+++++.++|+|||++++..+... ...++.+
T Consensus 162 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 205 (255)
T 3mb5_A 162 NVDHVILD-----LPQP--ERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLHE 205 (255)
T ss_dssp SEEEEEEC-----SSCG--GGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHH
T ss_pred CcCEEEEC-----CCCH--HHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHHH
Confidence 999873 3332 4689999999999999999764321 1345667
Q ss_pred HHHHcC--CceeeEEec
Q 018145 335 LAIAAG--FKGINFASC 349 (360)
Q Consensus 335 ll~~aG--f~~~~~~~~ 349 (360)
++++.| |..+++...
T Consensus 206 ~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 206 KLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHTGGGBSCCEEECC
T ss_pred HHHHcCCCccccEEEEE
Confidence 888888 888877644
No 128
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.31 E-value=1.3e-12 Score=114.16 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=92.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CC----CCC-cEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV----PEG-DAILMK 262 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~----~~~-D~i~~~ 262 (360)
.++.+|||||||+|..+..++...|+.+++++|+ +.+++.+++. .+|+++.+|+.+ +. +.. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999999889999999999 8888877642 469999999876 43 233 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.+ . +...+++.+++.|||||++++....... ...+++.+.+++.||+
T Consensus 149 ~~----~--~~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----A--RLSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----S--CHHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEE
T ss_pred cc----C--CHHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCe
Confidence 63 2 3568999999999999999986421100 0124567888999999
Q ss_pred eeeEEe
Q 018145 343 GINFAS 348 (360)
Q Consensus 343 ~~~~~~ 348 (360)
++++..
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887754
No 129
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.31 E-value=2.3e-12 Score=108.95 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=81.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C-CC-CC-cEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VP-EG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~-~~-~~-D~i~~ 261 (360)
.+++.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ + .. .. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6789999999 8888877653 579999999876 2 33 33 99998
Q ss_pred cccccc-------CChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 KWILHC-------WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~~vlh~-------~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
...+.. ...++...+++++.+.|||||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 765511 123355679999999999999999987543
No 130
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.31 E-value=4.1e-12 Score=118.19 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=86.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCCCCCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPEG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~~~~~~ 256 (360)
.+++.++ ...+.+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .++++..+|+.++++..
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566665 44558999999999999999999999999999999 8888887653 14888999999866643
Q ss_pred --cEEEecccccc---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 --DAILMKWILHC---WDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 --D~i~~~~vlh~---~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|+++..+|+ .++....++++.+++.|||||+++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999998885 3344556899999999999999999753
No 131
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.30 E-value=5.1e-12 Score=114.32 Aligned_cols=129 Identities=15% Similarity=0.191 Sum_probs=94.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCC-CC--CC-C-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE-SV--PE-G-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~-~~--~~-~-D~i 259 (360)
+++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999999878889999998 888877653 2579999999876 21 23 3 999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 260 LMKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 260 ~~~~vlh~~~~~~~--~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
++....+..++... ..+++.++++|||||++++..... +.+ .....++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~-----------~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WLD-----------LELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TTC-----------HHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------ccc-----------hHHHHHHHHHHH
Confidence 99777665543332 588999999999999999874211 000 113567889999
Q ss_pred HcCCceeeEEec
Q 018145 338 AAGFKGINFASC 349 (360)
Q Consensus 338 ~aGf~~~~~~~~ 349 (360)
++||..+++...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
No 132
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.30 E-value=5.1e-12 Score=108.38 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=77.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC--cEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG--DAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~--D~i~~~~v 264 (360)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999999 8888877542 579999999887 3 4543 98887554
Q ss_pred cccCChhH------HHHHHHHHHHhCCCCcEEEEEe
Q 018145 265 LHCWDDDH------CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 265 lh~~~~~~------~~~~L~~i~~~LkpgG~lli~e 294 (360)
..+..... ...+|+.+++.|||||+|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 33211110 2578999999999999999865
No 133
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.29 E-value=3.6e-12 Score=105.81 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=84.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CC---CCC--cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SV---PEG--DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~---~~~--D~i~~~~vl 265 (360)
..++.+|||||||. +.+|. +.+++.++++ .++++..+|+.+ +. +.. |+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56789999999996 23776 7888877653 359999999987 44 443 999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 266 HCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 266 h~~-~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
||+ ++ ...+|++++++|||||++++.++....... ....++.++|.++|+++||
T Consensus 74 ~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLH--SAEILAEIARILRPGGCLFLKEPVETAVDN--------------------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESSSCS--------------------SSSSCCHHHHHHHHHHTTC
T ss_pred hhcccC--HHHHHHHHHHHCCCCEEEEEEccccccccc--------------------ccccCCHHHHHHHHHHCCC
Confidence 998 54 368999999999999999997765432100 1123578999999999999
No 134
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.29 E-value=1.8e-12 Score=119.55 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=88.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCCC-cE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DA 258 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~~-D~ 258 (360)
..+++.++ ...+.+|||||||+|.++..+++.+|..+++++|. +.+++.++++ ..++++.+|+.+..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34555554 34457999999999999999999999999999998 7888877653 34678999998744444 99
Q ss_pred EEeccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 259 ILMKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 259 i~~~~vlh~~---~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|+++..+|+. ..+....++++++++|||||+++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 9999999862 3456789999999999999999998753
No 135
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.28 E-value=4.2e-12 Score=112.36 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=78.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 272 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~ 272 (360)
++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++...-.++.+|+.+ +++.+ |+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5689999999999999999987 468899998 8888877654222388899887 66543 999998877666433
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
...+|++++++|||||++++..+..
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 6789999999999999999987643
No 136
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.28 E-value=2e-12 Score=111.33 Aligned_cols=99 Identities=10% Similarity=0.172 Sum_probs=78.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC----CCCC--cEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES----VPEG--DAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~----~~~~--D~i~~~~ 263 (360)
...+|||||||+|.++..+++.+|+..++++|+ +.+++.++++ .+++++.+|+.+. ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457999999999999999999999999999999 8888776542 5799999998762 4544 9998875
Q ss_pred ccccCChhHH------HHHHHHHHHhCCCCcEEEEEee
Q 018145 264 ILHCWDDDHC------LRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 264 vlh~~~~~~~------~~~L~~i~~~LkpgG~lli~e~ 295 (360)
...+...... ..+++.++++|||||+|++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 5443222221 2589999999999999998763
No 137
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.28 E-value=2.8e-11 Score=102.56 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=78.6
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC--CCeEEEecchhHHHhCCCCCCcEEEecCCCC-C-----------
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP--QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S----------- 252 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~----------- 252 (360)
++.+.+..++++.+|||||||+|.++..+++.+| +.+++++|+..+. ..++++++.+|+.+ +
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccc
Confidence 4445444345678999999999999999999998 6899999984431 23679999999987 4
Q ss_pred --------------CCC-C-cEEEeccccccCC----hhH-----HHHHHHHHHHhCCCCcEEEEEe
Q 018145 253 --------------VPE-G-DAILMKWILHCWD----DDH-----CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 253 --------------~~~-~-D~i~~~~vlh~~~----~~~-----~~~~L~~i~~~LkpgG~lli~e 294 (360)
++. . |+|++...+|+.. +.. ...+|+.++++|||||++++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 3 9999988877532 111 1248999999999999999854
No 138
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.28 E-value=2e-11 Score=108.67 Aligned_cols=149 Identities=12% Similarity=0.044 Sum_probs=95.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHh-CCCCCCcEEEe-cCCCC----CCCC--Cc
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD-APSYAGVEHVG-GNMFE----SVPE--GD 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~v~~~~-~d~~~----~~~~--~D 257 (360)
.++..+....++.+|||||||||.++..+++. +..+++++|+ +.|++. .++.+++.... .|+.. .+|. .|
T Consensus 75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD 153 (291)
T 3hp7_A 75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPS 153 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred HHHHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCC
Confidence 44455541234679999999999999988886 5568999998 788876 34445654433 23322 1343 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe-eecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN-SIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
+|++..++|++ ..+|..++++|||||+++++. +.+...+ . .........+.. ...+..+++.+++
T Consensus 154 ~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~-~-~~~~~G~vrd~~-------~~~~~~~~v~~~~ 219 (291)
T 3hp7_A 154 FASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGR-E-QIGKNGIVRESS-------IHEKVLETVTAFA 219 (291)
T ss_dssp EEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCG-G-GCC-CCCCCCHH-------HHHHHHHHHHHHH
T ss_pred EEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccCh-h-hcCCCCccCCHH-------HHHHHHHHHHHHH
Confidence 99998888754 468999999999999999862 2111100 0 000000000000 0123578899999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||++..+...+
T Consensus 220 ~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 220 VDYGFSVKGLDFSP 233 (291)
T ss_dssp HHTTEEEEEEEECS
T ss_pred HHCCCEEEEEEECC
Confidence 99999998887664
No 139
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.28 E-value=2.8e-13 Score=119.52 Aligned_cols=145 Identities=8% Similarity=0.005 Sum_probs=95.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC----CCC----CC-cEE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE----SVP----EG-DAI 259 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~----~~~----~~-D~i 259 (360)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+.+ +++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999988899999998 8888877642 369999999643 344 23 999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCcc
Q 018145 260 LMKWILHCWDD-------------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 326 (360)
Q Consensus 260 ~~~~vlh~~~~-------------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (360)
+++-.+|.... +....++..++++|||||.+.+++...... ........... ...+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~--------~~~l~~~g~~~-~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS--------LQLKKRLRWYS-CMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH--------HHHGGGBSCEE-EEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH--------HhcccceEEEE-ECCCCh
Confidence 99866654331 112356788999999999998877543210 00000000000 012333
Q ss_pred CCHHHHHHHHHHcCCceeeEEecC
Q 018145 327 RTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 455889999999999998877654
No 140
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.26 E-value=2.5e-12 Score=112.96 Aligned_cols=121 Identities=14% Similarity=0.055 Sum_probs=92.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCC----CC-cEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP----EG-DAILMK 262 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~----~~-D~i~~~ 262 (360)
.++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+|+++.+|+.+ +.. .. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4578999999999999999999999999999998 8888877642 469999999877 331 23 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.+- +...+++.+.+.|||||++++....... . ...++.+.++..||.
T Consensus 159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~-------~--------------------e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLEVGGAAVAMKGPRVE-------E--------------------ELAPLPPALERLGGR 205 (249)
T ss_dssp SSC------CHHHHHHHHGGGEEEEEEEEEEECSCCH-------H--------------------HHTTHHHHHHHHTEE
T ss_pred CcC------CHHHHHHHHHHHcCCCeEEEEEeCCCcH-------H--------------------HHHHHHHHHHHcCCe
Confidence 542 2357899999999999999986632110 0 122356777888999
Q ss_pred eeeEEec
Q 018145 343 GINFASC 349 (360)
Q Consensus 343 ~~~~~~~ 349 (360)
..++.+.
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8887654
No 141
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.26 E-value=2.1e-11 Score=107.75 Aligned_cols=124 Identities=9% Similarity=0.109 Sum_probs=92.6
Q ss_pred CC-CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C--CCC-C-cEEE
Q 018145 195 FQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S--VPE-G-DAIL 260 (360)
Q Consensus 195 ~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~--~~~-~-D~i~ 260 (360)
.+ ++.+|||+|||+|.++..+++..+. +++++|+ +.+++.|+++ ++++++.+|+.+ . ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999765 8999998 8888877653 479999999987 3 333 3 9999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcC
Q 018145 261 MKWILHCW------------------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG 322 (360)
Q Consensus 261 ~~~vlh~~------------------~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (360)
++-.++.. .......+++.+.+.|||||+++++.. ..
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~---------------------- 179 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---PE---------------------- 179 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---TT----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---HH----------------------
Confidence 96444322 113456799999999999999999531 10
Q ss_pred CCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 323 GGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 323 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
...++.+++++.||...++.+.
T Consensus 180 -----~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 180 -----RLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -----THHHHHHHHHHTTEEEEEEEEE
T ss_pred -----HHHHHHHHHHHCCCceEEEEEe
Confidence 2345677888889988776544
No 142
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.25 E-value=1e-11 Score=109.42 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=96.4
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 255 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~ 255 (360)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. +++++..+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 35566565 677889999999999999999998 67899999998 8887776542 579999999987 4664
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHH
Q 018145 256 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 333 (360)
Q Consensus 256 ~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 333 (360)
. |+|++. +++. ..+|+++.++|+|||++++.++... ...++.
T Consensus 165 ~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVALD-----LMEP--WKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 999972 3432 3689999999999999999875321 123455
Q ss_pred HHHHHcCCceeeEEe
Q 018145 334 ELAIAAGFKGINFAS 348 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~ 348 (360)
+.++++||..+++..
T Consensus 209 ~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 209 RAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHTTTTEEEEEEEE
T ss_pred HHHHHCCCceEEEEE
Confidence 667778888777654
No 143
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.25 E-value=2.5e-11 Score=100.25 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=82.6
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEecCCCC-C--------CCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S--------VPEG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~--------~~~~ 256 (360)
.+++.+....++.+|||+|||+|.++..+++.+ |+.+++++|+..+++ ..++++..+|+.+ + .+..
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 344444324567899999999999999999995 778999999843433 2679999999988 4 5543
Q ss_pred --cEEEeccccccCChhH---------HHHHHHHHHHhCCCCcEEEEEeee
Q 018145 257 --DAILMKWILHCWDDDH---------CLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~---------~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|+|++...+|+.+... ...+++.+.+.|+|||++++.++.
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999988765431 158899999999999999987753
No 144
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.25 E-value=2.4e-11 Score=114.19 Aligned_cols=111 Identities=14% Similarity=0.221 Sum_probs=85.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC-------CC--------CCCcEEEecCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PS--------YAGVEHVGGNM 249 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~v~~~~~d~ 249 (360)
..++..+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+|+++.+|.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 34555555 66788999999999999999999888888999998 7766655 32 25789998865
Q ss_pred CC-C--C----CCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 018145 250 FE-S--V----PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 300 (360)
Q Consensus 250 ~~-~--~----~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~ 300 (360)
+. + + ...|+|+++++++. ++....|+++.+.|||||+|++.+++.+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 43 2 2 12399999877742 466788999999999999999998777654
No 145
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.24 E-value=3.5e-11 Score=103.10 Aligned_cols=129 Identities=13% Similarity=0.047 Sum_probs=99.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC---CcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~---~D~i~~~~v 264 (360)
+++.+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|++..+|.++.++. .|+|++.++
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 4568999999999999999999999999999998 8888877653 4799999999886552 499988765
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 344 (360)
- .+-...+|..+.+.|+|+|+|++.-. . ..+.++++|.+.||.++
T Consensus 94 G----g~~i~~Il~~~~~~L~~~~~lVlq~~-~------------------------------~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLANVERLILQPN-N------------------------------REDDLRIWLQDHGFQIV 138 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTTCCEEEEEES-S------------------------------CHHHHHHHHHHTTEEEE
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEECC-C------------------------------CHHHHHHHHHHCCCEEE
Confidence 2 34567899999999999999887321 0 24567889999999988
Q ss_pred eEEec--CC-ceeEEEEe
Q 018145 345 NFASC--VC-NLYIMEFF 359 (360)
Q Consensus 345 ~~~~~--~~-~~~vi~~~ 359 (360)
+..-. .+ ++-+|.+.
T Consensus 139 ~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 139 AESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 76432 33 34466543
No 146
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.24 E-value=2.3e-11 Score=101.09 Aligned_cols=120 Identities=10% Similarity=0.085 Sum_probs=91.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC--Cc
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE--GD 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~--~D 257 (360)
.++..+. ..++.+|||+|||+|.++..+++ +..+++++|. +.+++.+++. ++++++.+|+.++.+. .|
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3444444 55678999999999999999998 7889999998 8888877653 5799999998875443 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++..+ + +...+++.+++. |||++++...... +..++.++++
T Consensus 103 ~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEFE 145 (183)
T ss_dssp EEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHHH
T ss_pred EEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHHH
Confidence 9999887 2 346789999988 9999999774211 1345678889
Q ss_pred HcCCceeeE
Q 018145 338 AAGFKGINF 346 (360)
Q Consensus 338 ~aGf~~~~~ 346 (360)
+.||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999875544
No 147
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.24 E-value=3.7e-11 Score=103.17 Aligned_cols=129 Identities=13% Similarity=0.025 Sum_probs=100.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC-C--CcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-E--GDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~-~--~D~i~~~~v 264 (360)
+++.+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|++..+|.++..+ . .|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4568999999999999999999999889999998 8888887653 579999999998443 2 399988765
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 344 (360)
. .+-...+|....+.|+++|+|++.-. . ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------~------~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------N------REDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------S------CHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------C------ChHHHHHHHHHCCCEEE
Confidence 4 34677899999999999998887431 1 25668899999999988
Q ss_pred eEEec--C-CceeEEEEe
Q 018145 345 NFASC--V-CNLYIMEFF 359 (360)
Q Consensus 345 ~~~~~--~-~~~~vi~~~ 359 (360)
+..-. . -++-+|.+.
T Consensus 145 ~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 145 AEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEC--CEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 76533 2 344466654
No 148
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.24 E-value=2.2e-11 Score=105.98 Aligned_cols=100 Identities=13% Similarity=0.273 Sum_probs=74.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC------------CCCCcEEEecCCCC--C--CCCC--
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------------SYAGVEHVGGNMFE--S--VPEG-- 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~d~~~--~--~~~~-- 256 (360)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.|+ ...+|+++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567999999999999999999999999999999 77776543 23679999999986 2 4444
Q ss_pred cEEEeccccccCChh--H----HHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDD--H----CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~--~----~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|.|++...-.+.... . ...+|+.++++|||||+|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 998875433221100 0 13699999999999999998653
No 149
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.23 E-value=2.8e-11 Score=104.97 Aligned_cols=141 Identities=14% Similarity=0.118 Sum_probs=87.1
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEE--------Ee-cCCCCCCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEH--------VG-GNMFESVPE 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~--------~~-~d~~~~~~~ 255 (360)
..++.++....+.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. +++.. .. .|+....+
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 104 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP- 104 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC-
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC-
Confidence 44444542234579999999999999999988 3358999998 7787775432 33322 22 22221111
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC-------ccCC
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG-------RERT 328 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~t 328 (360)
|.+.+..++.++ ..+|++++++|||||++++.. .+. .. .... .. ...| ...+
T Consensus 105 -d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~------~e---~~~~--~~--~~~G~~~d~~~~~~~ 163 (232)
T 3opn_A 105 -SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ------FE---AGRE--QV--GKNGIIRDPKVHQMT 163 (232)
T ss_dssp -SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH------HH---SCHH--HH--C-CCCCCCHHHHHHH
T ss_pred -CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc------cc---cCHH--Hh--CcCCeecCcchhHHH
Confidence 444444444332 468999999999999999953 110 00 0000 00 0011 1136
Q ss_pred HHHHHHHHHHcCCceeeEEecC
Q 018145 329 KKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.+++.++++++||++..+...+
T Consensus 164 ~~~l~~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 164 IEKVLKTATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHHHHHHHTEEEEEEEECS
T ss_pred HHHHHHHHHHCCCEEEEEEEcc
Confidence 7899999999999998887654
No 150
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.23 E-value=8.1e-12 Score=115.26 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=84.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC-c
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D 257 (360)
.+++.+. ..++.+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.++. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4555554 456789999999999999988886 56789999985466655432 579999999988 55554 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
+|++..+++++..+.....+.++++.|||||++++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999999998887777778899999999999999864
No 151
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.23 E-value=1.1e-11 Score=118.70 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=86.4
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
.+.+++.+. ..++.+|||||||+|.++..+++ .+..+++++|+..+++.|++. ++|+++.+|+.+ +.++.
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345666665 45678999999999999998887 577899999995477666532 579999999998 66655
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
|+|++..+++++..++....+.++++.|||||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998888888777778888899999999999985
No 152
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.22 E-value=2.3e-11 Score=106.89 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhh--CCCCeEEEecc-hhHHHhCCCC---C-------C---------------------
Q 018145 196 QNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY---A-------G--------------------- 241 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------~--------------------- 241 (360)
.++.+|||+|||+|.++..+++. .+..+++++|+ +.+++.|++. . +
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 35689999999999999999998 77888999999 8888877632 2 2
Q ss_pred ----cE-------------EEecCCCCCC------CC-C-cEEEeccccccCCh-------hHHHHHHHHHHHhCCCCcE
Q 018145 242 ----VE-------------HVGGNMFESV------PE-G-DAILMKWILHCWDD-------DHCLRILKNCYKAVPGNGK 289 (360)
Q Consensus 242 ----v~-------------~~~~d~~~~~------~~-~-D~i~~~~vlh~~~~-------~~~~~~L~~i~~~LkpgG~ 289 (360)
++ +..+|+++.. +. . |+|+++..++.... +....++++++++|+|||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 67 9999998844 33 3 99999876665432 5567899999999999999
Q ss_pred EEEEeee
Q 018145 290 VIVMNSI 296 (360)
Q Consensus 290 lli~e~~ 296 (360)
++++...
T Consensus 210 l~~~~~~ 216 (250)
T 1o9g_A 210 IAVTDRS 216 (250)
T ss_dssp EEEEESS
T ss_pred EEEeCcc
Confidence 9995543
No 153
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.22 E-value=1.4e-11 Score=106.23 Aligned_cols=99 Identities=15% Similarity=0.083 Sum_probs=79.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC--------CCCc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV--------PEGD 257 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~--------~~~D 257 (360)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+.. ...|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34578999999999999999999998 789999998 8888776542 46999999987621 1249
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+|++.... .....+++.+.+.|+|||++++.+...+
T Consensus 136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 99986542 3456899999999999998888776554
No 154
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.22 E-value=1.8e-11 Score=104.44 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=79.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC-CC-C-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV-PE-G- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~-~~-~- 256 (360)
.++..+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.++++ ++++++.+|+.+.. +. .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 3344444 567889999999999999999998 578889998 8888877642 47999999998733 22 2
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|+|++..++|++++ .+.+.|||||++++....
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999875 478899999999997654
No 155
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.22 E-value=4.2e-11 Score=100.52 Aligned_cols=100 Identities=11% Similarity=-0.028 Sum_probs=80.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--C-CCC-cEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--V-PEG-DAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~-~~~-D~i~~~~ 263 (360)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ ++++++.+|+.+ . . +.. |+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999987774 5668999998 8888887653 479999999877 2 3 233 9999988
Q ss_pred ccccCChhHHHHHHHHHHH--hCCCCcEEEEEeeec
Q 018145 264 ILHCWDDDHCLRILKNCYK--AVPGNGKVIVMNSIV 297 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~--~LkpgG~lli~e~~~ 297 (360)
.+|+. .++...+++.+.+ .|+|||++++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87753 3567889999999 999999999977544
No 156
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.21 E-value=5.5e-11 Score=106.18 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=92.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC-CCCC-cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES-VPEG-DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~-~~~~-D~i~~~~vl 265 (360)
+++.+|||+|||+|.++..+++..+. +++++|+ +.+++.++++ ++++++.+|+.+. .+.. |+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45789999999999999999999876 8999998 8888877642 4599999999983 3333 999885331
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
....+++.+.+.|||||++++.+...... ......+++.+.++++||+...
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 23568999999999999999988754210 0012456788999999998765
No 157
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.20 E-value=2.2e-11 Score=104.36 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=81.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-C-C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-G 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~-~ 256 (360)
.++..+. ..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. +++++..+|+....+ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 3444444 5667899999999999999999987 6689999998 8888877653 469999999866444 2 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++..++|+++ +++.+.|||||++++...
T Consensus 147 fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred eeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 9999999999877 278899999999999764
No 158
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.20 E-value=1.4e-11 Score=104.93 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=75.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-CC-cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-EG-DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~~-D~i~~~~vlh~ 267 (360)
++.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. .++++..+|+.+..+ .. |+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 367999999999999999999999999999998 8888776542 359999999988433 33 99997542 2
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+...+++.+++.|+|||++++..
T Consensus 143 ----~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEe
Confidence 24588999999999999999864
No 159
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.20 E-value=1.8e-11 Score=109.24 Aligned_cols=102 Identities=19% Similarity=0.298 Sum_probs=82.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE- 255 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~- 255 (360)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. +++++..+|+.+.++.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 35555555 667789999999999999999999 67899999998 8888877643 4799999999875553
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
. |+|++. .++ ...+|+++.++|+|||++++.++
T Consensus 181 ~~D~V~~~-----~~~--~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 181 DVDALFLD-----VPD--PWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp SEEEEEEC-----CSC--GGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccCEEEEC-----CcC--HHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 999983 332 24689999999999999999874
No 160
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=3.6e-11 Score=105.58 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=79.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC---CCC---CCcEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVP---EGDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~---~~~---~~D~i 259 (360)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++|+++.+|+.+ ..+ ..|+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44578999999999999999999998 789999999 8888877643 479999999865 222 23999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
++... ......+++++.+.|||||+|++.+....
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 98543 33556799999999999999998776553
No 161
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.19 E-value=6.3e-11 Score=108.89 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=78.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCC-C-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~-~- 256 (360)
.+...+. ..++.+|||||||+|.++..+++. +..+++++|..++++.|++. ++++++.+|+.+ +++. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444444 556789999999999999998887 45689999984477776542 579999999988 6663 3
Q ss_pred cEEEecc---ccccCChhHHHHHHHHHHHhCCCCcEEE
Q 018145 257 DAILMKW---ILHCWDDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 257 D~i~~~~---vlh~~~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
|+|++.. .+++ ......+|+.+++.|||||+++
T Consensus 133 D~Ivs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLF--ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTT--TCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccC--HHHHHHHHHHHHhhcCCCcEEE
Confidence 9999876 3443 3356789999999999999998
No 162
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.18 E-value=9e-11 Score=101.59 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=99.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC-C--CcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-E--GDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~-~--~D~i~~~~v 264 (360)
+++.+|||||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|++..+|.++.++ . .|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4568999999999999999999999889999998 8888887653 579999999998443 2 499988664
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 344 (360)
. .+-+..+|....+.|+++++|++.-. . ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~~~~~lIlq~~-------------------------~------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAGVTKLILQPN-------------------------I------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------S------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCCCCEEEEEcC-------------------------C------ChHHHHHHHHHCCCEEE
Confidence 3 34677899999999999999887531 0 24567889999999986
Q ss_pred eEEec--CC-ceeEEEEe
Q 018145 345 NFASC--VC-NLYIMEFF 359 (360)
Q Consensus 345 ~~~~~--~~-~~~vi~~~ 359 (360)
+..-. .+ ++-+|.+.
T Consensus 145 ~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 145 SEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 65422 33 44466553
No 163
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.18 E-value=6.4e-11 Score=103.14 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=76.9
Q ss_pred CcceEEEEcCCcchHHHHHHhh----CCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCC--C---CC--CcEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFES--V---PE--GDAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~--~---~~--~D~i~~~~ 263 (360)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.|+.. ++|+++.+|+.+. + +. .|+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999997 68899999999 8888877643 6899999999873 2 22 39998765
Q ss_pred ccccCChhHHHHHHHHHHH-hCCCCcEEEEEee
Q 018145 264 ILHCWDDDHCLRILKNCYK-AVPGNGKVIVMNS 295 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~-~LkpgG~lli~e~ 295 (360)
. |. +...+|+.+.+ .|||||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 42 45678999997 9999999999775
No 164
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.18 E-value=2.9e-11 Score=111.57 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=77.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC--cEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~--D~i~~~~v 264 (360)
..++.+|||||||+|.++..+++. +..+++++|..++++.|++. ++|+++.+|+.+ +.+.. |+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 345689999999999999999987 66789999985577766542 459999999998 66643 99998765
Q ss_pred cccC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 265 LHCW-DDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 265 lh~~-~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+++ .......+++.+.++|||||+++.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 4443 234567899999999999999874
No 165
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.17 E-value=2.7e-11 Score=109.09 Aligned_cols=98 Identities=14% Similarity=0.247 Sum_probs=78.6
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC---CCC-CC-cEEEecccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVP-EG-DAILMKWIL 265 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~---~~~-~~-D~i~~~~vl 265 (360)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|..+ ..+ .. |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999999 8899887642 589999999876 233 23 999986554
Q ss_pred ccCChhH--HHHHHHHHHHhCCCCcEEEEEee
Q 018145 266 HCWDDDH--CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 266 h~~~~~~--~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+...... ...+++.++++|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4332222 25789999999999999988664
No 166
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.17 E-value=1.7e-11 Score=105.79 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=101.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCC-CCCC-cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES-VPEG-DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~-~~~~-D~i~~~~vlh~ 267 (360)
..+.+|||||||.|-++..+....|..+++++|+ +.+++.++.+ .+.++...|.... .+.. |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 8888877653 4578999999884 3433 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
+.++.....+ ++.++|+|+|.++..+.-.=.. +.+ .+ .......|++.+.+.|... +..
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~G-rs~-------gm-----------~~~Y~~~~e~~~~~~g~~~-~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQ-RSK-------GM-----------FQNYSQSFESQARERSCRI-QRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------CH-----------HHHHHHHHHHHHHHHTCCE-EEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcC-CCc-------ch-----------hhHHHHHHHHHHHhcCCce-eee
Confidence 9887766777 9999999999888766511110 000 11 1123567999999999854 444
Q ss_pred ecCCc
Q 018145 348 SCVCN 352 (360)
Q Consensus 348 ~~~~~ 352 (360)
..++.
T Consensus 270 ~~~nE 274 (281)
T 3lcv_B 270 EIGNE 274 (281)
T ss_dssp EETTE
T ss_pred eecCe
Confidence 44443
No 167
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.17 E-value=1.7e-11 Score=106.62 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=80.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC----CC-cEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP----EG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~----~~-D~i~~ 261 (360)
..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++. ++++++.+|+.+..+ .. |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34578999999999999999999889999999998 8888877652 479999999987433 33 99997
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.... .....+++.+.+.|||||+|++-+....
T Consensus 149 ~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~~ 180 (232)
T 3ntv_A 149 DAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLYH 180 (232)
T ss_dssp ETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred cCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence 6432 2456799999999999999988665543
No 168
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.17 E-value=1.4e-11 Score=106.28 Aligned_cols=100 Identities=11% Similarity=0.173 Sum_probs=79.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC---CCC-----C-C
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVP-----E-G 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~---~~~-----~-~ 256 (360)
..++.+|||||||+|..+..+++.++ +.+++++|+ +.+++.|+++ ++|+++.+|+.+ ..+ . .
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34568999999999999999999875 789999998 8888887653 469999999754 222 2 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+|++....+++. ....+++.+ +.|||||+|++.+...
T Consensus 136 D~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp SEEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 9999988777654 334677777 9999999998866554
No 169
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.16 E-value=3.9e-11 Score=104.92 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=79.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C-----CCC-c
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V-----PEG-D 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~-----~~~-D 257 (360)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.|+++ ++|+++.+|+.+. . +.. |
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4568999999999999999999986 789999998 7777776542 5899999998762 2 233 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
+|++... ......+++.+.+.|||||+|++-+...+.
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9988653 234567899999999999999998876643
No 170
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.16 E-value=2.8e-11 Score=111.18 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=78.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-----------------CCcEEEe
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-----------------AGVEHVG 246 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------------~~v~~~~ 246 (360)
..++..+. ..++.+|||||||+|.++..+++. .|+.+++++|+ +.+++.|+++ .+++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 667889999999999999999998 57789999998 7777776542 4799999
Q ss_pred cCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 247 GNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 247 ~d~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+|+.+. ++.+ |+|++...- + ..+++.+++.|+|||+|++..+.
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~~-----~--~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDMLN-----P--HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECSSS-----T--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECCCC-----H--HHHHHHHHHhcCCCcEEEEEeCC
Confidence 999873 3433 999984321 1 13789999999999999987754
No 171
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.15 E-value=2.6e-11 Score=111.57 Aligned_cols=104 Identities=13% Similarity=0.230 Sum_probs=79.5
Q ss_pred HHHHhhcccCCCcceEEEEcCC------cchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCC--
Q 018145 186 ERILEHYEGFQNVERLVDVGGG------FGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVP-- 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~-- 254 (360)
+.++..+. .++.+||||||| +|..+..+++. +|+.+++++|+ +.+.. ..++++++.+|+.+ ++.
T Consensus 207 e~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~ 281 (419)
T 3sso_A 207 DRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDR 281 (419)
T ss_dssp HHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHH
T ss_pred HHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhh
Confidence 34454443 456899999999 67667777765 59999999999 66632 34789999999988 443
Q ss_pred -----CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 255 -----EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 255 -----~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.. |+|++.. .|++ .+....|++++++|||||++++.|...
T Consensus 282 l~~~d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 282 IARRYGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp HHHHHCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred hhcccCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 23 9999864 4654 356789999999999999999988763
No 172
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.15 E-value=5.3e-11 Score=105.63 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=78.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEeccccccCCh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 270 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~ 270 (360)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.+..+|+.+ +++.+ |+|++..+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~---- 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC---- 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh----
Confidence 4568999999999999999999988889999998 8888877654 678999999987 55543 9999866532
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.+++++++|||||++++.++..
T Consensus 160 -----~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 160 -----KAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -----CHHHHHHHEEEEEEEEEEEECT
T ss_pred -----hHHHHHHhcCCCcEEEEEEcCH
Confidence 4889999999999999998654
No 173
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.15 E-value=4.9e-11 Score=103.35 Aligned_cols=100 Identities=13% Similarity=0.209 Sum_probs=79.9
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCCCCC--CC-c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFESVP--EG-D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~~~--~~-D 257 (360)
..++..+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.+++. .+++++.+|+.+..+ .. |
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34455554 5667899999999999999999986 68888888 8888877643 279999999987333 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+|++..++|++++ .+.+.|||||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 9999999999873 578899999999998753
No 174
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.15 E-value=5.2e-11 Score=110.97 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=79.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vl 265 (360)
..++.+|||||||+|.++..+++.. ..+++++|...+++.+++. ++|+++.+|+.+ +.+.. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 5567899999999999999999873 4489999986666666542 569999999988 56544 999997766
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 266 HCWDD-DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 266 h~~~~-~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|.+.. .....+++.+++.|||||++++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 66542 34677999999999999999886544
No 175
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.15 E-value=5.1e-11 Score=107.01 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=74.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------CCCcEEEecCCCCCC--C-CC-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV--P-EG-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~--~-~~-D~i 259 (360)
+++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .++++++.+|..+.. + .. |+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4568999999999999999999878889999998 888887654 258999999998732 2 23 999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vlh~~~~~~~--~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++...-+..+.... ..+++.++++|+|||++++...
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 199 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEecC
Confidence 99655443332222 6799999999999999998653
No 176
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.15 E-value=5.2e-11 Score=105.30 Aligned_cols=100 Identities=11% Similarity=0.201 Sum_probs=77.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCC--------CCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFES--------VPE 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~--------~~~ 255 (360)
..++.+|||+|||+|.++..+++++|..+++++|+ +.+++.|+++ ++++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999998 7777765431 2599999999874 233
Q ss_pred -C-cEEEecccccc----------------CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 -G-DAILMKWILHC----------------WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 -~-D~i~~~~vlh~----------------~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. |+|+++-.++. ........+++.+.+.|||||+++++.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 99999733321 222236788999999999999999854
No 177
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.14 E-value=4.6e-11 Score=103.98 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=81.0
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC--
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-- 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~-- 255 (360)
...+++.+. ..++.+|||||||+|.++..+++..+ .+++++|. +.+++.+++. .++++..+|+..+++.
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 344555554 66778999999999999999999987 88999997 8888877642 4699999998545442
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.|+|++..+++++++ ++.+.|||||++++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 399999999998763 67889999999999764
No 178
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.14 E-value=5.1e-11 Score=108.48 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=81.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-C-C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-G 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~-~ 256 (360)
.++..+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.++++ ++++++.+|+.+..+ . .
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 4444454 56778999999999999999999887 478999998 8888877643 469999999987322 2 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|+|++..++|+++ +.+.+.|||||++++....
T Consensus 145 fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred eEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 9999999999877 3678899999999997543
No 179
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.14 E-value=3.9e-11 Score=103.54 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=78.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---CC-----CC-c
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG-D 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~~-----~~-D 257 (360)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+. .+ .. |
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4567999999999999999999988 789999998 8888777542 4699999998652 11 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+|++... ......+++.+.+.|||||+|++.+...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9996543 33456799999999999999999887654
No 180
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.13 E-value=4.6e-11 Score=104.72 Aligned_cols=95 Identities=16% Similarity=0.357 Sum_probs=73.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC--------------CCCCcEEEecCCCCC----CCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP--------------SYAGVEHVGGNMFES----VPE 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~d~~~~----~~~ 255 (360)
.+++.+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ...+++++.+|+.+. ++.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34568999999999999999999999999999998 77776553 225799999999873 333
Q ss_pred C--cEEEeccccccCChhHH-----------HHHHHHHHHhCCCCcEEEEEe
Q 018145 256 G--DAILMKWILHCWDDDHC-----------LRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 ~--D~i~~~~vlh~~~~~~~-----------~~~L~~i~~~LkpgG~lli~e 294 (360)
+ |.|++. ++++.. ..+++.+.++|+|||+|++..
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 3 666643 233211 478999999999999999954
No 181
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.13 E-value=3.5e-11 Score=104.52 Aligned_cols=98 Identities=13% Similarity=0.222 Sum_probs=80.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C--CCC-cEEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--PEG-DAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~--~~~-D~i~ 260 (360)
..++.+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+. . +.. |+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34567999999999999999999999999999998 8888877643 4799999998773 1 233 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+....+ ....+|+.+.+.|+|||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 877654 34678999999999999999976544
No 182
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.12 E-value=9.3e-11 Score=109.13 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=80.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCC-CC-cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVP-EG-DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~-~~-D~i~~~~vlh~ 267 (360)
++.+|||+|||+|.++..+++. +.+++++|. +.+++.++++ ..++++.+|+.+ ..+ .. |+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999998 468889998 8888877653 258999999998 343 23 99999999987
Q ss_pred ---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 268 ---WDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 268 ---~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
...+....+++++++.|||||+++++..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 3345678999999999999999999753
No 183
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.10 E-value=1.7e-10 Score=103.19 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=75.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC-CCC---cEEEec--
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-PEG---DAILMK-- 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~-~~~---D~i~~~-- 262 (360)
++.+|||||||+|.++..+++. |+.+++++|+ +.+++.|+++ ++++++.+|+++.. ... |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999999 8888877653 36999999999843 345 999996
Q ss_pred ----------cccccCChh------HHHHHHHHHH-HhCCCCcEEEE
Q 018145 263 ----------WILHCWDDD------HCLRILKNCY-KAVPGNGKVIV 292 (360)
Q Consensus 263 ----------~vlh~~~~~------~~~~~L~~i~-~~LkpgG~lli 292 (360)
.+. |.+.. +...+++++. +.|+|||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 333 22221 1126899999 99999999997
No 184
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.10 E-value=7e-11 Score=97.98 Aligned_cols=98 Identities=10% Similarity=-0.004 Sum_probs=76.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---CCCC-cEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPEG-DAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~~~~-D~i~~~~ 263 (360)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+.. |+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45689999999999999999887 6678999998 8888877642 3699999998762 2233 9999987
Q ss_pred ccccCChhHHHHHHHHHH--HhCCCCcEEEEEeeec
Q 018145 264 ILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNSIV 297 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~--~~LkpgG~lli~e~~~ 297 (360)
.++. .....+++.+. +.|+|||++++.....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 6642 34456677776 9999999999977544
No 185
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.10 E-value=1.3e-10 Score=106.31 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=74.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCC-C-cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~-~-D~i~~~~vl 265 (360)
.++.+|||||||+|.++..+++. +..+++++|...+++.+++. ++|+++.+|+.+ +.+. . |+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 45679999999999999988886 55689999985577766532 579999999988 5663 3 999987654
Q ss_pred ccCC-hhHHHHHHHHHHHhCCCCcEEEE
Q 018145 266 HCWD-DDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 266 h~~~-~~~~~~~L~~i~~~LkpgG~lli 292 (360)
+.+. ......+++.+.+.|||||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4432 33456889999999999999974
No 186
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.09 E-value=5.4e-10 Score=93.94 Aligned_cols=105 Identities=17% Similarity=0.321 Sum_probs=76.2
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCC-----------
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV----------- 253 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~----------- 253 (360)
..++.+.+..++++.+|||+|||+|.++..+++. ..+++++|+..+ ...++++++.+|+.+..
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 3455666653567799999999999999999988 778999998332 22368999999998731
Q ss_pred ---CCCcEEEeccccccCC----h-----hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 254 ---PEGDAILMKWILHCWD----D-----DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 254 ---~~~D~i~~~~vlh~~~----~-----~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
...|+|++........ + +.+..+|+.+.+.|||||+|++..+
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2339999854322111 1 1235789999999999999997654
No 187
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.09 E-value=6.2e-10 Score=93.70 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=75.8
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC---------CeEEEecchhHHHhCCCCCCcEEE-ecCCCC-C----
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ---------IKAVNFDLPHVVQDAPSYAGVEHV-GGNMFE-S---- 252 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~d~~~-~---- 252 (360)
+...+..+.++.+|||||||+|.++..+++.++. .+++++|+..+ ...++++++ .+|+.+ +
T Consensus 13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHHH
Confidence 3344443456789999999999999999999865 78999998442 123568999 999876 2
Q ss_pred ----CCC-C-cEEEeccccccC----ChhH-----HHHHHHHHHHhCCCCcEEEEEee
Q 018145 253 ----VPE-G-DAILMKWILHCW----DDDH-----CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 253 ----~~~-~-D~i~~~~vlh~~----~~~~-----~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+. . |+|++...+|.. .+.. ...+++.++++|||||++++...
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 222 3 999986554431 1111 14789999999999999998765
No 188
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.08 E-value=7.5e-10 Score=98.96 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=72.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc--hhHHHhCCCC----------------CCcEEEecCCCCC---C
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSY----------------AGVEHVGGNMFES---V 253 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~----------------~~v~~~~~d~~~~---~ 253 (360)
..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.++++ +++++...|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888763 447888887 5676655321 2688886655431 2
Q ss_pred -----CCC-cEEEeccccccCChhHHHHHHHHHHHhCC---C--CcEEEEE
Q 018145 254 -----PEG-DAILMKWILHCWDDDHCLRILKNCYKAVP---G--NGKVIVM 293 (360)
Q Consensus 254 -----~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~Lk---p--gG~lli~ 293 (360)
+.. |+|+++.++|+.+ ....+++.++++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 223 9999999999844 56789999999999 9 9998774
No 189
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.08 E-value=9.9e-11 Score=102.11 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=78.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C---------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--------- 253 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~--------- 253 (360)
..++.+|||||||+|..+..+++.+| ..+++++|. +.+++.+++. ++++++.+|+.+. .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34568999999999999999999987 689999998 8888777643 3599999998652 1
Q ss_pred ------C-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 254 ------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 254 ------~-~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+ .. |+|++.... +....+++++.+.|+|||++++.+...+
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 185 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLWD 185 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 1 33 999987543 3456889999999999999999775543
No 190
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.06 E-value=8.7e-11 Score=98.10 Aligned_cols=98 Identities=9% Similarity=-0.021 Sum_probs=75.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC------CCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------PEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~------~~~-D~i~ 260 (360)
.++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++. ++++++.+|+.+.. +.. |+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4568999999999999998887 45678999998 8888877653 46999999987721 233 9999
Q ss_pred eccccccCChhHHHHHHHHH--HHhCCCCcEEEEEeeec
Q 018145 261 MKWILHCWDDDHCLRILKNC--YKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i--~~~LkpgG~lli~e~~~ 297 (360)
+...++... ....++.+ .+.|+|||++++.....
T Consensus 122 ~~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 122 LDPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp ECCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ECCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 987765333 23456666 88899999999876544
No 191
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.06 E-value=6.6e-11 Score=101.07 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=77.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC--CCCC-CcEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--SVPE-GDAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~--~~~~-~D~i~~~~v 264 (360)
++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+ +... .|+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 467999999999999999999988 789999998 8888877643 469999999865 2222 599987632
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
......+++.+++.|||||++++.+....
T Consensus 136 -----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred -----hhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 22456889999999999999998765543
No 192
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.06 E-value=7.9e-11 Score=101.47 Aligned_cols=95 Identities=6% Similarity=0.117 Sum_probs=75.9
Q ss_pred cceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC---CC-CCC-cEEEec
Q 018145 198 VERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE---SV-PEG-DAILMK 262 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~---~~-~~~-D~i~~~ 262 (360)
..+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++. ++|+++.+|+.+ .. +.. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999885 789999998 8888877542 479999999876 23 233 999886
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.... ....+++.+.+.|||||+|++-+..+
T Consensus 137 ~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSPM-----DLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCTT-----THHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 5332 34578999999999999999866554
No 193
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.05 E-value=1.1e-10 Score=102.43 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=78.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC--C-C------CC-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--S-V------PE- 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~--~-~------~~- 255 (360)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++|+++.+|+.+ + . +.
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999988 789999998 8888877642 479999999865 2 2 23
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.|+|++.... .....+++.+.+.|||||+|++.+..+
T Consensus 157 fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 3999986432 245688999999999999999876554
No 194
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.04 E-value=4e-10 Score=102.41 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=77.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CC-CCC-cEEEec-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV-PEG-DAILMK- 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~-~~~-D~i~~~- 262 (360)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+++++.+|+.+ +. +.. |+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56778999999999999999999875 488999998 7788776543 468999999887 32 333 999972
Q ss_pred -----cccccCC-------hhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 263 -----WILHCWD-------DDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 263 -----~vlh~~~-------~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.++++.+ .++ ...+|+++.+.|||||+|++.+...
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 3344322 222 1589999999999999999877543
No 195
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.03 E-value=8.6e-10 Score=97.44 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=71.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC--C------CcEEE--ecCCCCCCCC-CcEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFESVPE-GDAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~d~~~~~~~-~D~i~~~~ 263 (360)
+.++.+|||||||+|.++..+++. .+++++|+..+...+++. . ++.++ .+|+.+-.+. .|+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 566789999999999999998887 678899984454443322 2 68999 8999872133 39999976
Q ss_pred ccccCChhH-----HHHHHHHHHHhCCCCc--EEEEEeee
Q 018145 264 ILHCWDDDH-----CLRILKNCYKAVPGNG--KVIVMNSI 296 (360)
Q Consensus 264 vlh~~~~~~-----~~~~L~~i~~~LkpgG--~lli~e~~ 296 (360)
+ +..+... ...+|+.++++||||| .+++..+.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 6 4433211 1247899999999999 99886544
No 196
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.02 E-value=1e-10 Score=101.21 Aligned_cols=99 Identities=11% Similarity=0.196 Sum_probs=78.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---CC-----CC-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG- 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~~-----~~- 256 (360)
..++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. .+ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 44578999999999999999999987 789999998 8888776542 5799999998652 21 33
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
|+|++... ......+++.+.+.|+|||++++.+....
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 183 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLWR 183 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence 99998543 23456789999999999999999776543
No 197
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.02 E-value=2.3e-10 Score=98.92 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=75.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC------CCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCCCCCC-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP------QIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFESVPE- 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~~~~- 255 (360)
..++.+|||||||+|.++..+++..+ ..+++++|. +.+++.++++ .+++++.+|..+..+.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998765 368999998 8888877542 4799999999875443
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+ |+|++...+++++ +++.+.|||||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 2 9999999998765 578899999999998754
No 198
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.02 E-value=1e-10 Score=99.33 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=75.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC-C-C---CC-CcEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-S-V---PE-GDAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~-~---~~-~D~i~~ 261 (360)
++.+|||+|||+|.++..++... ..+++++|+ +.+++.++++ ++++++.+|+.+ . . .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 45799999999999999877764 357999998 8888877642 479999999876 2 1 24 599999
Q ss_pred ccccccCChhHHHHHHHHH--HHhCCCCcEEEEEeeec
Q 018145 262 KWILHCWDDDHCLRILKNC--YKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i--~~~LkpgG~lli~e~~~ 297 (360)
...+| . .....+++.+ .++|+|||++++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 87765 3 3456788888 56799999999876543
No 199
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.02 E-value=4e-10 Score=100.53 Aligned_cols=103 Identities=13% Similarity=0.227 Sum_probs=81.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCC---------CCCcEEEecCCCC-CC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFE-SV 253 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~ 253 (360)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+ +.
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 45566565 667789999999999999999996 57889999998 888776653 2479999999987 45
Q ss_pred CC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 254 PE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 254 ~~-~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+. . |+|++. .++. ..+|+++.++|+|||++++..+.
T Consensus 168 ~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVLD-----MLAP--WEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCceeEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCC
Confidence 43 3 999982 2322 36799999999999999998753
No 200
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=99.02 E-value=1.1e-09 Score=98.74 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=68.7
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-----hhHHHhCC--CC--CCcEEEec-CCCC-CCCCCcEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAP--SY--AGVEHVGG-NMFE-SVPEGDAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~~--~~v~~~~~-d~~~-~~~~~D~i~~~~ 263 (360)
++++.+|||||||+|.++..+++. .+++++|. +..++... .. ++|+++.+ |+.+ +....|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456789999999999999999887 36777776 43333222 12 56999999 8887 333349999976
Q ss_pred ccc---cCChhH-HHHHHHHHHHhCCCCcEEEEEe
Q 018145 264 ILH---CWDDDH-CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 264 vlh---~~~~~~-~~~~L~~i~~~LkpgG~lli~e 294 (360)
.++ +..++. ...+|+.++++|||||.|++..
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 653 222221 1257899999999999888743
No 201
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.01 E-value=6.6e-10 Score=95.03 Aligned_cols=95 Identities=8% Similarity=0.080 Sum_probs=79.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~ 267 (360)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.++.. ..+++...|... +.+.. |++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 457899999999999998877 8999999999 8888887653 557899999998 54444 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+.+++....+ ++.+.|+|++.++-..
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9877666666 8999999998777665
No 202
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.01 E-value=1.1e-10 Score=95.95 Aligned_cols=95 Identities=17% Similarity=0.061 Sum_probs=73.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----C-CcEEEecCCCCCCC-------CCcEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVP-------EGDAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~d~~~~~~-------~~D~i~~~~ 263 (360)
++.+|||+|||+|.++..+++..+. ++++|+ +.+++.++++ . +++++.+|+.+..+ ..|+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998766 888898 8888887653 2 79999999876211 239999988
Q ss_pred ccccCChhHHHHHHHHHH--HhCCCCcEEEEEeeec
Q 018145 264 ILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNSIV 297 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~--~~LkpgG~lli~e~~~ 297 (360)
.+|. .. ..+++.+. +.|||||++++.....
T Consensus 119 ~~~~-~~---~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYAM-DL---AALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTTS-CT---THHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCch-hH---HHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 7762 22 23455555 9999999999877644
No 203
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.01 E-value=1.6e-10 Score=103.35 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC---CCCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~---~~~~-D~i~ 260 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999999888889999998 888886643 25799999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~~~--~~~L~~i~~~LkpgG~lli~e 294 (360)
+....+..+.... ..+++.++++|+|||++++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8654443333332 589999999999999999864
No 204
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.01 E-value=7.7e-10 Score=98.31 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=71.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC--C------CcEEE--ecCCCC-CCCCCcEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFE-SVPEGDAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~d~~~-~~~~~D~i~~~~ 263 (360)
++++.+|||||||+|.++..+++. .+++++|+..+...+++. . ++.++ .+|+.+ +....|+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999999887 578899984464444322 2 68999 899876 411239999977
Q ss_pred ccccCChhH-----HHHHHHHHHHhCCCCc--EEEEEeee
Q 018145 264 ILHCWDDDH-----CLRILKNCYKAVPGNG--KVIVMNSI 296 (360)
Q Consensus 264 vlh~~~~~~-----~~~~L~~i~~~LkpgG--~lli~e~~ 296 (360)
+ +..+... ...+|+.+.++||||| .+++..+.
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 6 4332211 1247899999999999 98885543
No 205
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.01 E-value=6.9e-10 Score=102.57 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=84.0
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCC-
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP- 254 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~- 254 (360)
+..++.... +.++.+|||+|||+|.++..++... |+.+++++|+ +.+++.|+++ .++++..+|+.+ +.+
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 344555444 6778899999999999999999988 8899999998 8888887653 379999999988 443
Q ss_pred CC-cEEEeccccccCCh--hH----HHHHHHHHHHhCCCCcEEEEEee
Q 018145 255 EG-DAILMKWILHCWDD--DH----CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 255 ~~-D~i~~~~vlh~~~~--~~----~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.. |+|+++-....... .+ ...+++.+++.|||||+++++.+
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 23 99999544332111 11 26789999999999999999753
No 206
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.00 E-value=2.1e-10 Score=104.70 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCC---CCCC-C-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~~~-~-D~i 259 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .++++++.+|+.+ ..+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999998 888887654 2579999999875 2332 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 018145 260 LMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 260 ~~~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~ 293 (360)
++...-+..+.+. ...+++.++++|+|||+|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9855422211222 368999999999999999986
No 207
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.00 E-value=2.2e-10 Score=102.08 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=76.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC---CCCC-cEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~---~~~~-D~i~~ 261 (360)
++.+|||||||+|.++..+++..|..+++++|+ |.+++.|++ .++++++.+|..+. .++. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 468999999999999999998877889999998 888887653 26899999998762 2233 99999
Q ss_pred ccccccCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 018145 262 KWILHCWDDDH--CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 262 ~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~e 294 (360)
....+..+... ...+++.++++|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 65443322111 2478999999999999998864
No 208
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.99 E-value=2.2e-10 Score=104.01 Aligned_cols=100 Identities=18% Similarity=0.142 Sum_probs=78.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------CCCcEEEecCCCCC---CCCC-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES---VPEG-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~---~~~~-D~i 259 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .++++++.+|+.+. .+.. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999888889999998 888876643 25799999998762 2233 999
Q ss_pred Eecccccc---CChhH--HHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWILHC---WDDDH--CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vlh~---~~~~~--~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++....|. -+... ...+++.++++|||||++++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99766654 11111 36889999999999999998643
No 209
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.99 E-value=1e-09 Score=95.91 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=79.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC-CC-C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-PE-G 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~-~~-~ 256 (360)
.++..++ ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++. +++++..+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4455554 567789999999999999999998 778999998 7888776542 57999999998854 43 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|+|++. .+ +...+++.+.+.|+|||++++..+.
T Consensus 159 ~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999973 23 2246799999999999999998853
No 210
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.99 E-value=5e-10 Score=96.69 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=76.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-----CCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCCCC----
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFESV---- 253 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~~---- 253 (360)
..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. .+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999987 5678999998 8888777542 47999999988743
Q ss_pred -CC--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 254 -PE--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 254 -~~--~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+. .|+|++...++++ ++.+.+.|||||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 22 2999999998864 46788999999999997653
No 211
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.98 E-value=2.5e-10 Score=103.03 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=75.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCC--CC-CCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE--SV-PEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~~-~~~-D~i~ 260 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .++++++.+|+.+ +. +.. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999998 888877653 3579999999865 22 233 9999
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 261 MKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 261 ~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+....+..+.. ....++++++++|+|||++++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 86544332211 124689999999999999998653
No 212
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.98 E-value=3.2e-10 Score=101.32 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=74.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC----------------CCCCcEEEecCCCCC--CCCC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----------------SYAGVEHVGGNMFES--VPEG 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~~d~~~~--~~~~ 256 (360)
.++.+|||||||+|.++..+++. |..+++++|+ +.+++.|+ ..++++++.+|..+. .+..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999998 88877654 235799999998652 1333
Q ss_pred -cEEEeccccccCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 018145 257 -DAILMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~e 294 (360)
|+|++....+..+... ...+++.++++|+|||++++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865543322222 2678999999999999999864
No 213
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.98 E-value=2e-11 Score=106.59 Aligned_cols=138 Identities=14% Similarity=0.035 Sum_probs=94.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCC-CcEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE-GDAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~-~D~i~~~~vl 265 (360)
.++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+. .|+|++...+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 356899999999999999999874 78899998 8888877643 379999999987 4222 3999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
|+.++. ...+.+++++|+|||.+++........ . .... -......+++.+++...|.-.+.
T Consensus 155 ~~~~~~--~~~~~~~~~~L~pgG~~i~~~~~~~~~-~--------~~~~--------lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 155 GGPDYA--TAETFDIRTMMSPDGFEIFRLSKKITN-N--------IVYF--------LPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp SSGGGG--GSSSBCTTTSCSSCHHHHHHHHHHHCS-C--------EEEE--------EETTBCHHHHHHTTCTTCCEEEE
T ss_pred CCcchh--hhHHHHHHhhcCCcceeHHHHHHhhCC-c--------eEEE--------CCCCCCHHHHHHHhccCCCEEEE
Confidence 986543 336778999999999855432111000 0 0000 01123567777788777766565
Q ss_pred EEecCCcee
Q 018145 346 FASCVCNLY 354 (360)
Q Consensus 346 ~~~~~~~~~ 354 (360)
.....+...
T Consensus 216 ~~~~~~~~k 224 (241)
T 3gdh_A 216 QNFLNNKLK 224 (241)
T ss_dssp EEEETTEEE
T ss_pred ehhhcCccc
Confidence 555554433
No 214
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.97 E-value=2.4e-10 Score=103.56 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=73.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC--C-CCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--V-PEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~--~-~~~-D~i~ 260 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .++++++.+|+.+. . +.. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999888899999999 888876643 25799999998762 1 233 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~~~--~~~L~~i~~~LkpgG~lli~e 294 (360)
+...-+.-++... ..+++.++++|+|||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8554332222222 688999999999999999865
No 215
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.97 E-value=4.8e-10 Score=95.18 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=74.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC--CCCC-C-cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVPE-G-DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~--~~~~-~-D~i~~~~vl 265 (360)
++.+|||+|||+|.++..+++... .+++++|+ +.+++.++++ ++++++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 357999999999999998777653 47899998 8888887653 479999999876 3332 3 999998775
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEEeeec
Q 018145 266 HCWDDDHCLRILKNCYK--AVPGNGKVIVMNSIV 297 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~--~LkpgG~lli~e~~~ 297 (360)
| .. ....+++.+.+ +|+|||++++.....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred C-CC--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 5 22 34567888876 499999999876543
No 216
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.97 E-value=3e-10 Score=103.37 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=76.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC---CCCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~---~~~~-D~i~ 260 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999999878889999998 888876643 25799999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~~~--~~~L~~i~~~LkpgG~lli~e 294 (360)
+...-+..+.... ..+++.+++.|+|||++++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8543222122222 689999999999999999864
No 217
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.96 E-value=1.1e-09 Score=94.33 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCCC-CCC--CcE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFES-VPE--GDA 258 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~-~~~--~D~ 258 (360)
..++.+|||||||+|..+..+++.. |..+++++|+ +.+++.++++ .+++++.+|+... .+. .|+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3567899999999999999999885 6679999998 8888776532 3799999998763 222 299
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|++...++++. +++.+.|||||++++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99998887654 5788999999999997643
No 218
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.96 E-value=2.6e-10 Score=99.32 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=77.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC--C-C------CCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--S-V------PEG 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~--~-~------~~~ 256 (360)
..++.+|||||||+|..+..+++..| +.+++++|. +.+++.+++. ++|+++.+|+.+ + . +..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999987 789999998 8888777542 479999999875 2 2 233
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+|++... ......+++.+.+.|+|||++++.+...
T Consensus 148 fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 148 YDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred cCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99987532 3355789999999999999998866544
No 219
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.96 E-value=2.1e-10 Score=99.53 Aligned_cols=98 Identities=13% Similarity=0.185 Sum_probs=77.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C--C---CC-c
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--P---EG-D 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~--~---~~-D 257 (360)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.|++. ++++++.+|+.+. . + .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3467999999999999999999987 689999998 8888877642 4699999997541 1 1 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+|++... ......+++.+.+.|+|||+|++.+..++
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 9997654 23556899999999999999999776553
No 220
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.94 E-value=6.4e-10 Score=99.58 Aligned_cols=102 Identities=16% Similarity=0.273 Sum_probs=74.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
..+++.++ ..++.+|||||||+|.++..+++... +++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~f 94 (285)
T 1zq9_A 18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF 94 (285)
T ss_dssp HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhh
Confidence 45556565 56778999999999999999999854 6777777 7787766532 479999999998 66656
Q ss_pred cEEEeccccccCChhHHHHHHHH--------------H--HHhCCCCcEEE
Q 018145 257 DAILMKWILHCWDDDHCLRILKN--------------C--YKAVPGNGKVI 291 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~--------------i--~~~LkpgG~ll 291 (360)
|+|+++...| ++.+-...+|.. + +++++|||+++
T Consensus 95 D~vv~nlpy~-~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 95 DTCVANLPYQ-ISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp SEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cEEEEecCcc-cchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 9998855444 454444455532 2 46899999663
No 221
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=100.73 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=70.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-------CCCcEEEecCCCC-CCCCC-cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~ 267 (360)
++.+|||||||+|.++...++. ...+++++|..++++.|++ .++|+++.+|+.+ +.|+. |+|++-..-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 4579999999999998766665 3457899997556666653 1679999999988 77765 99987333222
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEE
Q 018145 268 WD-DDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 268 ~~-~~~~~~~L~~i~~~LkpgG~lli 292 (360)
+. ......++....+.|||||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 22 23567788888999999998874
No 222
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.92 E-value=6.2e-10 Score=100.19 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=73.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC--C-CCC-cEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--V-PEG-DAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~--~-~~~-D~i~~ 261 (360)
.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . +.. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999888889999998 888876653 25899999998652 2 233 99997
Q ss_pred ccccccCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 262 KWILHCWDDD---HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 262 ~~vlh~~~~~---~~~~~L~~i~~~LkpgG~lli~e 294 (360)
...-+..... ....+++.+++.|+|||++++..
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 4332211111 12578999999999999999863
No 223
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.92 E-value=6.5e-10 Score=98.87 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=79.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC-CCCC-cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-VPEG-DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~-~~~~-D~i~~~~vl 265 (360)
+.++.+|||+|||+|.++..+++..+..+++++|+ +.+++.++++ .++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999998 8888877652 4689999999874 2223 999986543
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
....+++.+.+.|+|||++++.+...
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 33568999999999999999988765
No 224
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.89 E-value=2.2e-09 Score=90.74 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=67.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCCCCC-cEEEeccccccCChh
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPEG-DAILMKWILHCWDDD 271 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~~~~-D~i~~~~vlh~~~~~ 271 (360)
..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+ .+.. |+|++...+|++.+.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345689999999999999999887 5557999998 8888887654 379999999887 2334 999999999998764
Q ss_pred HHHHHHHHHHHhC
Q 018145 272 HCLRILKNCYKAV 284 (360)
Q Consensus 272 ~~~~~L~~i~~~L 284 (360)
....+++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 4567899999998
No 225
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.89 E-value=8.8e-10 Score=108.20 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=80.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC---CCCC--CcEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVPE--GDAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~---~~~~--~D~i~~~~ 263 (360)
.++.+|||||||.|.++..+++. +.+++++|. +.+++.|+.+ ..|+|..+++.+ ..+. .|+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45689999999999999999997 568999998 8888876542 258999999876 2332 39999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
+|||+++++....+.++.+.|+++|+.++...+..+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999998776555566777888888888877765433
No 226
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.89 E-value=2.7e-09 Score=94.15 Aligned_cols=90 Identities=10% Similarity=0.050 Sum_probs=73.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCCCCCCcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFESVPEGDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~~~~~D~i~~~~v 264 (360)
..+.+|||||||+|..+..+++. + .+++++|+ +.+++.|+++ ++++++.+|..+.....|+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~- 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ- 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS-
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC-
Confidence 35689999999999999999998 7 89999999 8999988763 479999999887432339999862
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+++. .+++.+++.|+|||.+++..
T Consensus 148 ----~dp~--~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 ----EPDI--HRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ----CCCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred ----CChH--HHHHHHHHhcCCCcEEEEEc
Confidence 2222 48999999999999999853
No 227
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.85 E-value=5.2e-08 Score=89.78 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=95.6
Q ss_pred cceEEEEcCCcchHHHHH--------HhhC-------CCCeEEEecchh-H-------HHhCCC----------C-CC--
Q 018145 198 VERLVDVGGGFGVTLSMI--------TSKY-------PQIKAVNFDLPH-V-------VQDAPS----------Y-AG-- 241 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~----------~-~~-- 241 (360)
+.+|+|+|||+|..+..+ .+.+ |.+++...|+|. . +...++ . .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 589999999999888765 3333 778888888852 1 122111 0 01
Q ss_pred -cEEEecCCCC-CCCCC--cEEEeccccccCCh------------------------------------hHHHHHHHHHH
Q 018145 242 -VEHVGGNMFE-SVPEG--DAILMKWILHCWDD------------------------------------DHCLRILKNCY 281 (360)
Q Consensus 242 -v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~------------------------------------~~~~~~L~~i~ 281 (360)
+.-+.+.+.. .+|.. |+|+++.+||++++ .+...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777 67765 99999999999872 14456799999
Q ss_pred HhCCCCcEEEEEeeecCCCCCCchhh--h-h-hhhhhHHHhhhcC-------------CCccCCHHHHHHHHH-HcCCce
Q 018145 282 KAVPGNGKVIVMNSIVPEIPEVSSAA--R-E-TSLLDVLLMTRDG-------------GGRERTKKEYTELAI-AAGFKG 343 (360)
Q Consensus 282 ~~LkpgG~lli~e~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~-------------~~~~~t~~e~~~ll~-~aGf~~ 343 (360)
+.|+|||++++.-...++........ . + ......+...... .-..++.+|++++++ +.||++
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I 292 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI 292 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence 99999999999888765421111000 0 0 0000001000000 112368999999998 589998
Q ss_pred eeEEe
Q 018145 344 INFAS 348 (360)
Q Consensus 344 ~~~~~ 348 (360)
.++..
T Consensus 293 ~~le~ 297 (374)
T 3b5i_A 293 DKLVV 297 (374)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77643
No 228
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.83 E-value=6.7e-09 Score=98.99 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=80.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CC-CC-cEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VP-EG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~-~~-D~i~~ 261 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ .+++++.+|+.+ + ++ .. |+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 566789999999999999999999887 89999998 7777665432 469999999987 3 44 33 99986
Q ss_pred ------ccccccCChh-------HH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 ------KWILHCWDDD-------HC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ------~~vlh~~~~~-------~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..+++..++. +. ..+|+++.+.|||||+|++.+...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 4455544432 11 578999999999999999988654
No 229
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.82 E-value=8.1e-09 Score=91.44 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=88.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~i~~~~v 264 (360)
.+++.+|||+|||+|.++..+++. +..+++++|+ |.+++.++++ ++|+++.+|..+-.++ .|.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 356789999999999999998887 4568999998 8888877642 5799999999873333 399887532
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCce
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 343 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 343 (360)
.....+|..+.+.|||||.|.+.+.+..+. ......+.++++.++.|+++
T Consensus 202 ------~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 202 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEE
T ss_pred ------CcHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcE
Confidence 123467888999999999998877654321 00123456778888999875
No 230
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.81 E-value=2.7e-08 Score=84.34 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=69.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----C-CcEEEecCCCCCCCCCcEEEeccccccCC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVPEGDAILMKWILHCWD 269 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~d~~~~~~~~D~i~~~~vlh~~~ 269 (360)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ . +++++.+|+.+.....|+|++.-.+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 456899999999999999998874 347889998 8888877643 2 69999999887212349999998888876
Q ss_pred hhHHHHHHHHHHHhC
Q 018145 270 DDHCLRILKNCYKAV 284 (360)
Q Consensus 270 ~~~~~~~L~~i~~~L 284 (360)
......+++.+.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555567899999998
No 231
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.81 E-value=1e-08 Score=91.34 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=81.2
Q ss_pred CCCcceEEEEcCCc------chHHHHHHhhCC-CCeEEEecchhHHHhCCCCCCcEE-EecCCCC-CCCCC-cEEEeccc
Q 018145 195 FQNVERLVDVGGGF------GVTLSMITSKYP-QIKAVNFDLPHVVQDAPSYAGVEH-VGGNMFE-SVPEG-DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~------G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~-~~~d~~~-~~~~~-D~i~~~~v 264 (360)
.+++.+|||||||+ |. ..+++..| +.+++++|+.+.+ +++++ +.+|+.+ +.+.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 56778999999944 76 44566666 6899999983332 46899 9999987 44444 99998643
Q ss_pred ccc--------C-ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 265 LHC--------W-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 265 lh~--------~-~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
.+. . ..+....+|+.+++.|||||+|++..+... ...++.++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 221 0 012345789999999999999998653211 11356777
Q ss_pred HHHcCCceeeEE
Q 018145 336 AIAAGFKGINFA 347 (360)
Q Consensus 336 l~~aGf~~~~~~ 347 (360)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888888877765
No 232
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.80 E-value=5.1e-09 Score=96.30 Aligned_cols=100 Identities=10% Similarity=0.158 Sum_probs=79.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCC-----CeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCC-CC-cEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVP-EG-DAILMK 262 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~-~~-D~i~~~ 262 (360)
.++.+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+.. .++.+..+|.+.+.+ .. |+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 45689999999999999999988764 67899998 8888777542 268999999988543 33 999998
Q ss_pred cccccCChhHH----------------HHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WILHCWDDDHC----------------LRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~vlh~~~~~~~----------------~~~L~~i~~~LkpgG~lli~e~ 295 (360)
-.+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 87766654332 2589999999999999998875
No 233
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.79 E-value=1.7e-08 Score=95.37 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=77.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCC-CC-cEEEec
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP-EG-DAILMK 262 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~-~~-D~i~~~ 262 (360)
.+++.+. ..++.+|||+|||+|.++..+++++ +..+++++|+ +.+++.| .+++++.+|+.+..+ .. |+|+++
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~N 105 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGN 105 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEEC
Confidence 3344443 3345699999999999999999887 6788999998 8888777 579999999988433 33 999994
Q ss_pred ccc----------ccCChhHH-----------------HHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WIL----------HCWDDDHC-----------------LRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~vl----------h~~~~~~~-----------------~~~L~~i~~~LkpgG~lli~e~ 295 (360)
--. ++++++.. ..+++++.+.|+|||+++++.+
T Consensus 106 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 106 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 111 11222221 2569999999999999999875
No 234
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.79 E-value=1.6e-08 Score=93.91 Aligned_cols=122 Identities=12% Similarity=0.081 Sum_probs=89.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCC-C-cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~-~-D~i~~~~ 263 (360)
+.++.+|||+|||+|.++..++...+..+++++|+ +.+++.|+++ +++++..+|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45678999999999999999999988778899998 8888887653 378999999988 5543 3 9999965
Q ss_pred ccccCC-----hhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 264 ILHCWD-----DDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 264 vlh~~~-----~~~-~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
.++... ..+ -..+++.+++.| ||+++++.. +.+.+.+.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 443211 112 257888999988 566665532 2334566788
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
+.||+..+.....
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 8899988776653
No 235
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.78 E-value=2.4e-09 Score=93.64 Aligned_cols=106 Identities=8% Similarity=0.176 Sum_probs=76.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCC-CcE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE-GDA 258 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~-~D~ 258 (360)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++. ...
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 45555555 5677899999999999999999985 78999998 8888888764 479999999988 6553 333
Q ss_pred EEeccccccCChhHHHHHH--------------HHHHHhCCCCcEEEEEe
Q 018145 259 ILMKWILHCWDDDHCLRIL--------------KNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L--------------~~i~~~LkpgG~lli~e 294 (360)
+++++.-++.+.+....++ +.+.+.|+|||++.++.
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 4444433333333333333 66899999999887644
No 236
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.78 E-value=8.1e-09 Score=90.21 Aligned_cols=104 Identities=8% Similarity=0.184 Sum_probs=72.2
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC-CCCC-Cc
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE-GD 257 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-~D 257 (360)
...+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 345666555 5667899999999999999999986 67888888 777776653 2689999999988 6664 34
Q ss_pred EEEeccccccCChhHHHHHH--------------HHHHHhCCCCcEEE
Q 018145 258 AILMKWILHCWDDDHCLRIL--------------KNCYKAVPGNGKVI 291 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L--------------~~i~~~LkpgG~ll 291 (360)
.+++++.-++++.+-...++ ..+.+.++|+|++.
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 44555544444433333333 33677777777543
No 237
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.78 E-value=8.1e-09 Score=92.99 Aligned_cols=100 Identities=11% Similarity=0.238 Sum_probs=71.1
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~ 256 (360)
...+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 345555555 567789999999999999999987 457888888 8887776542 579999999988 55555
Q ss_pred cEEEeccccccCChhHHHHHH---------------HHHHHhCCCCc
Q 018145 257 DAILMKWILHCWDDDHCLRIL---------------KNCYKAVPGNG 288 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L---------------~~i~~~LkpgG 288 (360)
|+|+++-.. +++.+....+| ..+.+.++|+|
T Consensus 108 D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 108 DVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp SEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 999886544 45666666666 34678898877
No 238
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.78 E-value=3.7e-09 Score=94.09 Aligned_cols=103 Identities=10% Similarity=0.056 Sum_probs=76.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CC-----CCC-cEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV-----PEG-DAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~-----~~~-D~i 259 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ .+++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998877 88999998 7777766542 479999999876 32 333 999
Q ss_pred Eec------ccccc---CCh-------hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 260 LMK------WILHC---WDD-------DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 260 ~~~------~vlh~---~~~-------~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
++. .+++. |+. +...++|+++.+.|||||+|++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 875 33321 111 123678999999999999999877544
No 239
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.74 E-value=2.6e-07 Score=84.48 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=93.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhh----------------CCCCeEEEecchh-HHH-hCCCCC------C---cEEEecC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSK----------------YPQIKAVNFDLPH-VVQ-DAPSYA------G---VEHVGGN 248 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-~~~-~a~~~~------~---v~~~~~d 248 (360)
++..+|+|+||++|..+..+... .|.+.++..|+|. .-. ..+..+ + +.-+.+.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 35689999999999776543332 4667788889842 111 111111 2 3445677
Q ss_pred CCC-CCCCC--cEEEeccccccCCh-------------------------------hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 249 MFE-SVPEG--DAILMKWILHCWDD-------------------------------DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 249 ~~~-~~~~~--D~i~~~~vlh~~~~-------------------------------~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|.. .+|.. |+|+++.+||++++ .|...+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 777 67765 99999999999764 133456999999999999999988
Q ss_pred eecCCCCCCc-----hhh-hhhhhhhHHHhhh---------cCCCccCCHHHHHHHHHHcC-CceeeE
Q 018145 295 SIVPEIPEVS-----SAA-RETSLLDVLLMTR---------DGGGRERTKKEYTELAIAAG-FKGINF 346 (360)
Q Consensus 295 ~~~~~~~~~~-----~~~-~~~~~~~~~~~~~---------~~~~~~~t~~e~~~ll~~aG-f~~~~~ 346 (360)
...++..... ... ....+.++..... ...-..++.+|+++++++.| |++.++
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 8776531100 000 1111112111100 00123468999999999996 466554
No 240
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.73 E-value=1.6e-07 Score=86.60 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=92.9
Q ss_pred cceEEEEcCCcchHHHHHHhh-----------------CCCCeEEEecch-----------h-HHHhC----CCCCC---
Q 018145 198 VERLVDVGGGFGVTLSMITSK-----------------YPQIKAVNFDLP-----------H-VVQDA----PSYAG--- 241 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a----~~~~~--- 241 (360)
..+|+|+||++|..+..+... .|.+.++..|+| . ..+.. ....+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999988876665 366788888987 1 11111 11112
Q ss_pred cEEEecCCCC-CCCCC--cEEEeccccccCChhH-------------------------H------------HHHHHHHH
Q 018145 242 VEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH-------------------------C------------LRILKNCY 281 (360)
Q Consensus 242 v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~-------------------------~------------~~~L~~i~ 281 (360)
+.-+.+.|.. .+|.. |+|+++.+||++++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344566666 57765 9999999999976321 1 12377889
Q ss_pred HhCCCCcEEEEEeeecCCC--CCCchhhhhhhhhhHHHhhh--------c-CCCccCCHHHHHHHHHHcC-CceeeEE
Q 018145 282 KAVPGNGKVIVMNSIVPEI--PEVSSAARETSLLDVLLMTR--------D-GGGRERTKKEYTELAIAAG-FKGINFA 347 (360)
Q Consensus 282 ~~LkpgG~lli~e~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~t~~e~~~ll~~aG-f~~~~~~ 347 (360)
+.|+|||++++.-...++. ...........+.++..... . ..-..++.+|++++++++| |++.++.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999988776553 11100001111222111100 0 0123468999999999985 7876654
No 241
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.69 E-value=2.5e-08 Score=94.52 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=79.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-C--CCC-C-cEEEe--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S--VPE-G-DAILM-- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~--~~~-~-D~i~~-- 261 (360)
..++.+|||+|||+|..+..+++..++.+++++|. +..++.++++ .+++++.+|+.+ + ++. . |+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 56678999999999999999999998889999998 7766665432 258899999987 3 333 3 99986
Q ss_pred ----ccccccCChh-------HH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 ----KWILHCWDDD-------HC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ----~~vlh~~~~~-------~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..++++.++. +. ..+|+++.+.|||||+|++.+...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 3445544331 11 478999999999999999988544
No 242
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.68 E-value=2.3e-08 Score=91.25 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=73.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------C-CcEEEecCCCCCC------C-CCcEEE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFESV------P-EGDAIL 260 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~d~~~~~------~-~~D~i~ 260 (360)
++.+|||+|||+|.++..+++... +++++|+ +.+++.++++ + +++++.+|+++.. . ..|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999998643 8999998 8888877653 2 4999999998721 2 239998
Q ss_pred eccc----------cccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 261 MKWI----------LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 261 ~~~v----------lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+.-- ++. .++...+++.+.+.|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 8321 121 235678999999999999998876654
No 243
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.68 E-value=1.4e-08 Score=96.37 Aligned_cols=102 Identities=9% Similarity=0.097 Sum_probs=77.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC-cEEEe-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILM- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~-D~i~~- 261 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ . |.++.+|+.+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 566789999999999999999999875 78999998 7788776543 4 8899999876 2 2333 99985
Q ss_pred -----ccccc-------cCChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 -----KWILH-------CWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 -----~~vlh-------~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..+++ .|+.+++ .++|+.+.+.|||||+|+..+...
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 12222 2333332 678999999999999999876544
No 244
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.65 E-value=4.9e-08 Score=93.35 Aligned_cols=101 Identities=17% Similarity=0.259 Sum_probs=77.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC-cEEEe---
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILM--- 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~-D~i~~--- 261 (360)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+|+++.+|+.+ + .+.. |+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999998 7777766542 468999999987 3 3343 99987
Q ss_pred c---cccc-------cCChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 K---WILH-------CWDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~---~vlh-------~~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+ .+++ +|+.++ ..++|+++.++|||||+|++.+...
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 1 2232 343322 2478999999999999999877544
No 245
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.56 E-value=5.1e-08 Score=92.34 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=76.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~-D~i~~~ 262 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ .+|.++.+|..+ . .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 566789999999999999999998765 78999998 7777766542 468999999876 2 3333 999872
Q ss_pred ------ccccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 263 ------WILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 263 ------~vlh~-------~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.++.. |+.++ ..++|+.+.+.|||||+|+..+...
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 22322 11111 1278999999999999999877544
No 246
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.50 E-value=9e-07 Score=80.54 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=104.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---------------------------CCCcEEEecC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGN 248 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~d 248 (360)
.+...|+.+|||.......+...+++++++.+|+|++++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999999999999999888999999999887774321 1578999999
Q ss_pred CCC-CC---------C-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHH
Q 018145 249 MFE-SV---------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL 316 (360)
Q Consensus 249 ~~~-~~---------~-~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~ 316 (360)
+.+ +. . .. .++++-.+|++++.+.+.++|+.+.+.+ |+|.+++.|.+.+..+..+. ... ....+.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~f-g~~-m~~~l~ 252 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRF-GAI-MQSNLK 252 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCH-HHH-HHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchH-HHH-HHHHhh
Confidence 987 22 1 22 7899999999999999999999999988 78888889988763222211 110 001111
Q ss_pred H-hhh-cCC-CccCCHHHHHHHHHHcCCc
Q 018145 317 L-MTR-DGG-GRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 317 ~-~~~-~~~-~~~~t~~e~~~ll~~aGf~ 342 (360)
. ... ..+ ....+.++..+.|.++||+
T Consensus 253 ~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 253 ESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred cccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1 100 011 2345889999999999997
No 247
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.48 E-value=1.9e-07 Score=87.07 Aligned_cols=111 Identities=7% Similarity=0.012 Sum_probs=80.0
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC--------------------------------------CeEE
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 225 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 225 (360)
.+..++.... +.+...|||.+||+|.++++.+....+ .+++
T Consensus 189 lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 189 MAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 3445555544 777889999999999999887765443 5689
Q ss_pred Eecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEecccccc-CC-hhHHHHHHHHHHHhCCC--CcEEE
Q 018145 226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHC-WD-DDHCLRILKNCYKAVPG--NGKVI 291 (360)
Q Consensus 226 ~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~-~~-~~~~~~~L~~i~~~Lkp--gG~ll 291 (360)
++|+ +.+++.|+.+ +++++..+|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.||+ ||+++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9998 8888887653 369999999988 44444 99999733221 11 24556677777777766 99999
Q ss_pred EEee
Q 018145 292 VMNS 295 (360)
Q Consensus 292 i~e~ 295 (360)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8775
No 248
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.48 E-value=8.4e-08 Score=91.27 Aligned_cols=109 Identities=18% Similarity=0.102 Sum_probs=79.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-------------CCCeEEEecc-hhHHHhCCCC------C--CcE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPSY------A--GVE 243 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~--~v~ 243 (360)
..+++.+. ..++.+|+|.|||+|.++..+.+.. +..+++++|+ +.+++.|+.. . .+.
T Consensus 161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 34444443 4556799999999999999888764 4467888888 8887776532 2 678
Q ss_pred EEecCCCC-CCCCC-cEEEeccccccCChh---------------HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 244 HVGGNMFE-SVPEG-DAILMKWILHCWDDD---------------HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 244 ~~~~d~~~-~~~~~-D~i~~~~vlh~~~~~---------------~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+..+|.+. +.... |+|+++--++..... .-..+++++.+.|||||+++++.+
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 99999988 43334 999997655542211 123789999999999999999875
No 249
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.47 E-value=6.5e-08 Score=90.19 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=74.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC------CCC-cEEEec
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV------PEG-DAILMK 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~------~~~-D~i~~~ 262 (360)
++.+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ .+++++.+|+.+.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5689999999999999999998 567899998 8888877653 34899999987621 223 999984
Q ss_pred cccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~vlh~~~~-------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
--.+..+. .....+++.+.+.|+|||.|++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 22211111 3456789999999999999998774
No 250
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.46 E-value=5.3e-07 Score=83.70 Aligned_cols=111 Identities=11% Similarity=0.014 Sum_probs=82.3
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC--------------------------------------CeEE
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 225 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 225 (360)
.+..++.... +.+...|+|.+||+|.++++.+....+ .+++
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 4445555444 777899999999999999887765443 5689
Q ss_pred Eecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEecccccc-C-ChhHHHHHHHHHHHhCCC--CcEEE
Q 018145 226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHC-W-DDDHCLRILKNCYKAVPG--NGKVI 291 (360)
Q Consensus 226 ~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~-~-~~~~~~~~L~~i~~~Lkp--gG~ll 291 (360)
++|+ +.+++.|+++ +++++..+|+.+ +.+.. |+|+++--.+. + ..++...+.+.+.+.||+ |++++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 9998 8888887653 469999999988 44444 99999633221 2 235677888888888887 99999
Q ss_pred EEee
Q 018145 292 VMNS 295 (360)
Q Consensus 292 i~e~ 295 (360)
++..
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8875
No 251
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.46 E-value=1.1e-07 Score=86.91 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=73.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCCcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~D~i~~~~vlh~ 267 (360)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.++++ ++++++.+|+.+.....|+|++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 4568999999999999999 77 4778999998 8888877642 4799999999874433399998421
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.....+++.+.+.|+|||.+++.+...
T Consensus 268 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ---TTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ---HhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 122378999999999999999987643
No 252
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.46 E-value=5.2e-07 Score=78.81 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=63.4
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CCCCC--cEE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG--DAI 259 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~~~~--D~i 259 (360)
..+++.++ ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ ++++. +.+
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~ 98 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELK 98 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEE
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcE
Confidence 45566555 566789999999999999999987 4578888888 8888887764 578999999998 66542 556
Q ss_pred EeccccccCChh
Q 018145 260 LMKWILHCWDDD 271 (360)
Q Consensus 260 ~~~~vlh~~~~~ 271 (360)
++.+.=++.+.+
T Consensus 99 vv~NlPy~i~~~ 110 (249)
T 3ftd_A 99 VVGNLPYNVASL 110 (249)
T ss_dssp EEEECCTTTHHH
T ss_pred EEEECchhccHH
Confidence 666655555443
No 253
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.45 E-value=6.5e-08 Score=90.64 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=74.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C-CcEEEecCCCCCC------CCC-cEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESV------PEG-DAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~d~~~~~------~~~-D~i~~ 261 (360)
++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ . +++++.+|+.+.. +.. |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999987 4558999998 8888877643 2 7899999987621 223 99998
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 KWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ~~vlh~~~~-------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.--.+..+. .....+++.+.+.|+|||++++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 432211111 4566889999999999999988775
No 254
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.43 E-value=4e-07 Score=81.39 Aligned_cols=79 Identities=10% Similarity=0.223 Sum_probs=61.6
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCC--C
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE--G 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~--~ 256 (360)
...+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +++. .
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 345666665 567789999999999999999998 457777777 8888877653 689999999998 6665 3
Q ss_pred cEEEeccccc
Q 018145 257 DAILMKWILH 266 (360)
Q Consensus 257 D~i~~~~vlh 266 (360)
|+|+++...+
T Consensus 116 D~Iv~NlPy~ 125 (295)
T 3gru_A 116 NKVVANLPYQ 125 (295)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEeCccc
Confidence 9998765443
No 255
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.43 E-value=4e-07 Score=84.86 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=71.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCC---CCC-CcEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VPE-GDAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~---~~~-~D~i~~~~vl 265 (360)
+++.+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ -..++..+|+++. .+. .|+|++.--.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 347899999999999999999874 34889998 8888887653 1235778888762 222 3999985322
Q ss_pred ccCCh-------hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 266 HCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 266 h~~~~-------~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
..-+. .....+++.+.+.|+|||+|++....
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11111 23357899999999999999977643
No 256
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.42 E-value=8.7e-08 Score=89.35 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=72.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C--CcEEEecCCCCCC------C-CCcEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESV------P-EGDAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~d~~~~~------~-~~D~i 259 (360)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|+++ . +++++.+|+++.. + ..|+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 346799999999999999999863 347899998 8888877642 2 7999999987621 1 23999
Q ss_pred Eecccc-----ccCC--hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWIL-----HCWD--DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vl-----h~~~--~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++.--. .... .....++++.+.+.|+|||.|++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 983221 1111 23445688899999999999988663
No 257
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.40 E-value=1.5e-06 Score=75.55 Aligned_cols=106 Identities=13% Similarity=0.052 Sum_probs=65.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecch-hHHHhCCCC----CCcEEEecCCCC-CCCC--Cc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPSY----AGVEHVGGNMFE-SVPE--GD 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~~v~~~~~d~~~-~~~~--~D 257 (360)
.++.+... +++..+|||||||+|.++...++..+-..++++|+. +........ .++.....++.. .++. .|
T Consensus 64 ~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D 142 (277)
T 3evf_A 64 RWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCD 142 (277)
T ss_dssp HHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCcc
Confidence 34555533 667789999999999999988877655555555552 221111111 134444554422 3433 39
Q ss_pred EEEeccccc---cCChh-HHHHHHHHHHHhCCCC-cEEEE
Q 018145 258 AILMKWILH---CWDDD-HCLRILKNCYKAVPGN-GKVIV 292 (360)
Q Consensus 258 ~i~~~~vlh---~~~~~-~~~~~L~~i~~~Lkpg-G~lli 292 (360)
+|++....+ ++-|+ ....+|+.+.+.|+|| |.+++
T Consensus 143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 999976555 11122 2235689999999999 99998
No 258
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.39 E-value=1.8e-07 Score=85.17 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=70.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------------CCcEEEecCCCCCC------C
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFESV------P 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~d~~~~~------~ 254 (360)
.++.+||+||||+|..+..+++..+ .+++.+|+ |.+++.|+++ ++++++.+|.++.. +
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3578999999999999999998865 78888988 8888877542 17999999998722 2
Q ss_pred C-CcEEEecccc-cc-CChh--HHHHHHHHH----HHhCCCCcEEEEEe
Q 018145 255 E-GDAILMKWIL-HC-WDDD--HCLRILKNC----YKAVPGNGKVIVMN 294 (360)
Q Consensus 255 ~-~D~i~~~~vl-h~-~~~~--~~~~~L~~i----~~~LkpgG~lli~e 294 (360)
+ .|+|++-..- .. ..+. ....+++.+ +++|+|||.+++.-
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs 314 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 314 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEc
Confidence 2 3999885322 10 0010 123455555 99999999998764
No 259
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.39 E-value=2.3e-07 Score=90.72 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=83.9
Q ss_pred hhhhhccCccHHHHHHHHHhhcchhhHHHHHhhccc---CCCcceEEEEcCCcchHHHHHHhhC----CCCeEEEecchh
Q 018145 159 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG---FQNVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDLPH 231 (360)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~~~ 231 (360)
.|+.+++++-+...|.+++.. .+.+..+. ..+...|+|||||+|-++...+++. -.+++.+++...
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 477888888888888776643 22222211 2345689999999998844433332 234678888744
Q ss_pred HHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 018145 232 VVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 232 ~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
+...+++. ++|+++.+|+.+ ..|+- |+|++-..=..+-.+....+|....+.|||||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 44444431 679999999999 78866 99987433333333445577888899999999764
No 260
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.38 E-value=3.6e-07 Score=85.08 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=81.3
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC--------------------------------------CeEE
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 225 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 225 (360)
.+..++.... +.+..+|||.+||+|.++.+.+....+ .+++
T Consensus 183 lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 183 LAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 3445555444 777899999999999999988776432 5689
Q ss_pred Eecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEecccccc-CC-hhHHHHHHHHHHHhCCC--CcEEE
Q 018145 226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHC-WD-DDHCLRILKNCYKAVPG--NGKVI 291 (360)
Q Consensus 226 ~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~-~~-~~~~~~~L~~i~~~Lkp--gG~ll 291 (360)
++|+ +.+++.|+.+ +.+++..+|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.||+ |+.++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9998 8999988753 369999999988 44444 99999544321 12 34566778888888876 89988
Q ss_pred EEee
Q 018145 292 VMNS 295 (360)
Q Consensus 292 i~e~ 295 (360)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8764
No 261
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.37 E-value=4.1e-07 Score=80.67 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------CCCcEEEecCCCCCCC---CC-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESVP---EG-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~~---~~-D~i 259 (360)
+++.+||-||+|.|..++++++..+..+++.+|+ |.+++.+++ .+|++++.+|...-+. +. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5678999999999999999999887778888888 888887754 2789999999988322 22 999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.-..=..-+.. --..+++.++++|+|||.++..-.
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 873321110110 113689999999999999998643
No 262
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.35 E-value=7.9e-07 Score=78.46 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=63.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCC--C-c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE--G-D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~--~-D 257 (360)
+.+++.+. ..++ +|||||||+|.++..+++.. .+++++|+ +.+++.++++ .+++++.+|+.+ ++++ . |
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 35556555 5666 99999999999999999986 46777776 7787766542 579999999988 6653 2 6
Q ss_pred EEEeccccccCChhHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKN 279 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~ 279 (360)
.|+. +.-++.+.+-..++|..
T Consensus 113 ~iv~-NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 113 LLVA-NLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EECSSCCHHHHHHHHHH
T ss_pred EEEe-cCcccccHHHHHHHhcC
Confidence 6555 44455665555555543
No 263
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.34 E-value=2e-07 Score=87.26 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=73.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------C-CcEEEecCCCCCC------CCC-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFESV------PEG-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~d~~~~~------~~~-D~i 259 (360)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ . +++++.+|+++.. +.. |+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 356799999999999999999874 458899998 8888877542 2 6899999987721 223 999
Q ss_pred Eecccc--------ccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWIL--------HCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vl--------h~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++.--. +.. ......++..+.+.|+|||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGA-CRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCC-CTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhHHHHH-HHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 985211 111 13567899999999999999998663
No 264
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.32 E-value=1.3e-06 Score=82.66 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=69.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC----
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---- 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~---- 254 (360)
..+++.+. ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.|+++ .+++|+.+|+.+..+
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34444444 456689999999999999999987 678999998 8888877642 479999999987322
Q ss_pred -C--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 255 -E--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 255 -~--~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
. .|+|++.--- .....+++.+.+ ++|++.+++.
T Consensus 353 ~~~~fD~Vv~dPPr-----~g~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 353 AKNGFDKVLLDPAR-----AGAAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp GTTCCSEEEECCCT-----TCCHHHHHHHHH-HCCSEEEEEE
T ss_pred hcCCCCEEEECCCC-----ccHHHHHHHHHh-cCCCeEEEEE
Confidence 2 2999984221 112245555543 7888877763
No 265
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.29 E-value=7.9e-07 Score=77.73 Aligned_cols=90 Identities=8% Similarity=0.068 Sum_probs=60.4
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCC---
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE--- 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~--- 255 (360)
...+++.+. ..++.+|||||||+|.++. +. ..+..+++++|+ +.+++.++++ ++++++.+|+.+ ++++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 345566555 5667899999999999999 54 455444888888 8888887664 479999999987 5432
Q ss_pred ---CcEEEeccccccCChhHHHHHH
Q 018145 256 ---GDAILMKWILHCWDDDHCLRIL 277 (360)
Q Consensus 256 ---~D~i~~~~vlh~~~~~~~~~~L 277 (360)
.+.++.++.-++.+.+-..+++
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2344444544444444333333
No 266
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.28 E-value=9.7e-07 Score=86.34 Aligned_cols=126 Identities=14% Similarity=0.097 Sum_probs=81.9
Q ss_pred hhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-------------CCCeEE
Q 018145 159 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAV 225 (360)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~ 225 (360)
.|+.+.+++-+...|.+++... +.+......+...|||||||+|-++...+++. ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 4777778888777777766442 11211111245789999999999964332221 235788
Q ss_pred Eecc-hhHHHhCCC------CCCcEEEecCCCC-CC------CC-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEE
Q 018145 226 NFDL-PHVVQDAPS------YAGVEHVGGNMFE-SV------PE-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKV 290 (360)
Q Consensus 226 ~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~------~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~l 290 (360)
+++. |.++...+. .++|+++.+|+.+ .. ++ .|+|++-..=.....+-....|..+.+.|||||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 8887 433322211 1679999999998 55 44 49998865544333444567888889999999975
Q ss_pred E
Q 018145 291 I 291 (360)
Q Consensus 291 l 291 (360)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 5
No 267
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.28 E-value=5.3e-07 Score=90.27 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=72.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCC--C-CCC-cEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFES--V-PEG-DAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~--~-~~~-D~i~~~~ 263 (360)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ ++++++.+|+++. . ... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 46799999999999999988853 346899998 8888877652 3799999999872 2 223 9999843
Q ss_pred c-----------cccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 264 I-----------LHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 264 v-----------lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
- ++. ......+++.+.+.|+|||+|++...
T Consensus 618 P~f~~~~~~~~~~~~--~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDV--QRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBH--HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHH--HHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1 221 23566889999999999999996553
No 268
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.27 E-value=1.4e-06 Score=82.13 Aligned_cols=91 Identities=15% Similarity=0.073 Sum_probs=67.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-CCcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-EGDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~~D~i~~~~vlh~ 267 (360)
.++.+|||+|||+|.++..+++. ..+++++|. +.+++.|+++ . ++|+.+|+.+..+ ..|+|++.---..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 45679999999999999999986 457888988 8888887653 3 8999999988443 3499998433221
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.. ..+++.+. .|+|||.+++..
T Consensus 366 ~~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp SC----HHHHHHHH-HHCCSEEEEEES
T ss_pred hH----HHHHHHHH-hcCCCcEEEEEC
Confidence 11 23555554 489999888853
No 269
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.26 E-value=3.9e-07 Score=80.89 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=53.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC--CeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVP 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~~ 254 (360)
+.+++.+. ..++.+|||||||+|.++..+++..+. .+++++|+ +.+++.++++ ++++++.+|+.+ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34555555 567789999999999999999998764 45777777 8888887654 679999999987 554
No 270
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.21 E-value=1.3e-06 Score=76.39 Aligned_cols=66 Identities=12% Similarity=0.214 Sum_probs=52.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC-CCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVP 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~ 254 (360)
..+++.+. ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 45566565 5677899999999999999999985 57788887 888887654 2689999999998 554
No 271
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.15 E-value=1.3e-06 Score=78.36 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=60.6
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-C--CC-
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S--VP- 254 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~--~~- 254 (360)
.+.+++.+. ..++.+|||+|||+|.++..+++.+|+.+++++|. +.+++.|+++ ++++++.+|+.+ + .+
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 345555555 56678999999999999999999999889999998 8888877542 589999999876 2 11
Q ss_pred ----CCcEEEec
Q 018145 255 ----EGDAILMK 262 (360)
Q Consensus 255 ----~~D~i~~~ 262 (360)
..|.|++.
T Consensus 94 ~g~~~~D~Vl~D 105 (301)
T 1m6y_A 94 LGIEKVDGILMD 105 (301)
T ss_dssp TTCSCEEEEEEE
T ss_pred cCCCCCCEEEEc
Confidence 23888874
No 272
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.12 E-value=4e-06 Score=73.40 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=62.6
Q ss_pred CcceEEEEcCCcchHHHHHHhh-------CCC-----CeEEEecc-h---hHHHh-----------CC------------
Q 018145 197 NVERLVDVGGGFGVTLSMITSK-------YPQ-----IKAVNFDL-P---HVVQD-----------AP------------ 237 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~-----------a~------------ 237 (360)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.++. ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 5679999999999988887664 674 57888886 4 22221 11
Q ss_pred --------CCCCcEEEecCCCC---CCCC----C-cEEEecc-ccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 238 --------SYAGVEHVGGNMFE---SVPE----G-DAILMKW-ILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 238 --------~~~~v~~~~~d~~~---~~~~----~-D~i~~~~-vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
...++++..+|+.+ ..+. . |+|++-. .-..-|+-.-..+|+.+++.|+|||+|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 11347789999866 2322 3 9998842 11101111125789999999999999884
No 273
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.12 E-value=5.2e-06 Score=72.29 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=70.2
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCC-cEEEec-CCCCCCC--
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAG-VEHVGG-NMFESVP-- 254 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-v~~~~~-d~~~~~~-- 254 (360)
...++.+.+. +++..+|||||||.|.++...++..+-.+++++|+ ......+.. ..+ +.+... |+.. ++
T Consensus 78 KL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~ 155 (282)
T 3gcz_A 78 KLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-MEVI 155 (282)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-SCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-cCCC
Confidence 3456666664 77888999999999999998887776667777776 333222222 112 233322 3332 22
Q ss_pred CCcEEEeccccc----cCChhHHHHHHHHHHHhCCCC--cEEEEEee
Q 018145 255 EGDAILMKWILH----CWDDDHCLRILKNCYKAVPGN--GKVIVMNS 295 (360)
Q Consensus 255 ~~D~i~~~~vlh----~~~~~~~~~~L~~i~~~Lkpg--G~lli~e~ 295 (360)
..|+|++-...+ ..+......+|.-+.+.|+|| |.+++--+
T Consensus 156 ~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 156 PGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 239999976665 111112235688889999999 99988443
No 274
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.98 E-value=2.4e-06 Score=79.20 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=63.4
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---CC-------------
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP------------- 254 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~~------------- 254 (360)
+.+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++.+|+.+. .+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999998853 57889998 8888877642 4799999998651 11
Q ss_pred ---CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 255 ---EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 255 ---~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..|+|++.- | ...+...+.+.|+|+|+++.+.
T Consensus 292 ~~~~fD~Vv~dP-----P---r~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 292 KSYQCETIFVDP-----P---RSGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GGCCEEEEEECC-----C---TTCCCHHHHHHHTTSSEEEEEE
T ss_pred ccCCCCEEEECc-----C---ccccHHHHHHHHhCCCEEEEEE
Confidence 239998631 1 1123456667777999988775
No 275
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.95 E-value=1.1e-05 Score=70.83 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=67.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-h-------hHHHhCCCC-------CCcEEEecCCCCC---CC--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P-------HVVQDAPSY-------AGVEHVGGNMFES---VP-- 254 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~~v~~~~~d~~~~---~~-- 254 (360)
..++.+|||+|||+|..+..+++. ..+++++|+ + .+++.++++ ++++++.+|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 344579999999999999999986 467899998 8 778777643 4699999998762 33
Q ss_pred -C-CcEEEeccccccCC------------------hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 255 -E-GDAILMKWILHCWD------------------DDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 255 -~-~D~i~~~~vlh~~~------------------~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
. .|+|++.-.+++-. +.+...+++.+.+..+ .++++-.+..
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 2 39999976555421 1123455666666654 3566655543
No 276
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.94 E-value=1.6e-05 Score=79.68 Aligned_cols=111 Identities=13% Similarity=0.012 Sum_probs=75.1
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC------------------------------------------CC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY------------------------------------------PQ 221 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~------------------------------------------p~ 221 (360)
.+..++.... +.+..+|||.+||+|.++.+.+... +.
T Consensus 178 LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 178 LAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 3445555444 6777899999999999998877542 23
Q ss_pred CeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCC----CCcEEEecccc--ccCChhHHHHHHHHHHHh---
Q 018145 222 IKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP----EGDAILMKWIL--HCWDDDHCLRILKNCYKA--- 283 (360)
Q Consensus 222 ~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~----~~D~i~~~~vl--h~~~~~~~~~~L~~i~~~--- 283 (360)
.+++++|+ +.+++.|+.+ +.+++..+|+.+ ..| ..|+|+++=-. ..-..+....+.+.+.+.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 57889998 8899887653 358999999987 333 23999997222 111233445555555444
Q ss_pred CCCCcEEEEEee
Q 018145 284 VPGNGKVIVMNS 295 (360)
Q Consensus 284 LkpgG~lli~e~ 295 (360)
+.|||+++++..
T Consensus 337 ~~~g~~~~ilt~ 348 (703)
T 3v97_A 337 QFGGWNLSLFSA 348 (703)
T ss_dssp HCTTCEEEEEES
T ss_pred hCCCCeEEEEeC
Confidence 458999999864
No 277
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.93 E-value=6.1e-06 Score=76.41 Aligned_cols=92 Identities=10% Similarity=-0.014 Sum_probs=69.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---------------------CCcEEEecCCCCC--
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFES-- 252 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~d~~~~-- 252 (360)
++.+|||+|||+|..+..++++.+..+++++|+ +.+++.++++ .+++++.+|+.+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 357999999999999999999988888999998 7777766532 1288999998662
Q ss_pred -CCC-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 253 -VPE-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 253 -~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+. .|+|++.- .. ....++..+.+.|||||.|++.-
T Consensus 127 ~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 233 39998532 11 12468999999999999877754
No 278
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.92 E-value=2e-05 Score=70.98 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=68.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCC-----CCcEEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP-----EGDAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~-----~~D~i~ 260 (360)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.++++ .+|+++.+|+.+ ... ..|.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4667899999999999999999885 4578999998 7777765532 479999999876 221 239998
Q ss_pred e------ccccccCCh---------hHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 261 M------KWILHCWDD---------DHC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 261 ~------~~vlh~~~~---------~~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+ ..++...++ +++ .++|+++.+.++ ||+|+......
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 6 122322111 111 246778877776 89887765433
No 279
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.88 E-value=0.0003 Score=63.65 Aligned_cols=143 Identities=11% Similarity=0.140 Sum_probs=102.4
Q ss_pred CcceEEEEcCCcchHHHHHHhh-CCCCeEEEecchhHHHhCC-----------------------------CCCCcEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDLPHVVQDAP-----------------------------SYAGVEHVG 246 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~v~~~~ 246 (360)
+...|+-+|||.=.....+... .++++++-+|+|++++.-+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4579999999999988888775 3688999999988776311 125788999
Q ss_pred cCCCC--C---------CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhh
Q 018145 247 GNMFE--S---------VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 313 (360)
Q Consensus 247 ~d~~~--~---------~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~ 313 (360)
.|+.+ . ++.. -++++-.+|.+++.++..++|+.+.+... +|.+++.|++.+.++ +...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~-------fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDR-------FGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSH-------HHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCH-------HHHHH
Confidence 99976 1 1212 68889999999999999999999999885 567777898865431 11111
Q ss_pred hHHHhhhcCCC------ccCCHHHHHHHHHHcCCceeeEEec
Q 018145 314 DVLLMTRDGGG------RERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 314 ~~~~~~~~~~~------~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
--... ..|. ...+.++..+.|.++||+.++..++
T Consensus 242 ~~~l~--~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLR--RRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHH--TTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHH--HhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 10110 1121 2347788899999999999887654
No 280
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.84 E-value=9.1e-05 Score=64.90 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=66.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----C-CCcEEEec-CCCCCCCC-Cc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----Y-AGVEHVGG-NMFESVPE-GD 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~-d~~~~~~~-~D 257 (360)
.++.+. .-+.++.+||||||++|.++..+++..+-..++++|+ ......... . +-+.+..+ |+..-.+. .|
T Consensus 71 ~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~D 149 (300)
T 3eld_A 71 RWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSD 149 (300)
T ss_dssp HHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcC
Confidence 344444 3356789999999999999999998766556777776 222111111 0 11333333 44432222 39
Q ss_pred EEEeccccccCCh----h-HHHHHHHHHHHhCCCC-cEEEEEee
Q 018145 258 AILMKWILHCWDD----D-HCLRILKNCYKAVPGN-GKVIVMNS 295 (360)
Q Consensus 258 ~i~~~~vlh~~~~----~-~~~~~L~~i~~~Lkpg-G~lli~e~ 295 (360)
+|++-..-+ -+. + ....+|.-+.+.|+|| |.|++--+
T Consensus 150 lVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 150 TLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp EEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred EEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 999865554 221 1 2245688889999999 99998533
No 281
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.83 E-value=8.7e-05 Score=67.56 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=68.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChh
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDD 271 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~ 271 (360)
++++.++||+||++|.++..++++ +.+++++|...+-......++|+++.+|.+. ..+.. |+|++-.+.+ +.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 467899999999999999999987 5789999975444444456889999999998 33333 9999977654 33
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 272 HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
....++.+.......++.++.+..
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 444555554444444465555554
No 282
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.80 E-value=7.5e-06 Score=92.40 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=67.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCC-----CeEEEecc-hhHHHhCCCC-C--CcEEEecCCCCC---CCCC-cEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-A--GVEHVGGNMFES---VPEG-DAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-~--~v~~~~~d~~~~---~~~~-D~i~~~~ 263 (360)
+..+||+||.|+|..+..+++.... .+++..|. +...+.++++ . .++....|..++ .+.. |+|+.++
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4679999999999887777766532 35777787 6666666654 1 122222233222 2233 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCce
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 343 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 343 (360)
+||.-+ +....|+++++.|||||++++.+...... ......+.... ...+....+.++|.++|.++||+.
T Consensus 1320 vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~~~~~~-----~g~~~~~~~~~---~r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLG--DPAVAVGNMAATLKEGGFLLLHTLLAGHP-----LGEMVGFLTSP---EQGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred cccccc--cHHHHHHHHHHhcCCCcEEEEEecccccc-----ccccccccccc---cccCCcccCHHHHHHHHHhCCCce
Confidence 999643 55678999999999999999988643110 00000000000 000123346778999999999998
Q ss_pred eeEEe
Q 018145 344 INFAS 348 (360)
Q Consensus 344 ~~~~~ 348 (360)
+....
T Consensus 1390 ~~~~~ 1394 (2512)
T 2vz8_A 1390 VALKR 1394 (2512)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 77643
No 283
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.77 E-value=1.8e-05 Score=76.85 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=74.3
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCC------------------CCeEEEecc-hhHHHhCCCC------CC-
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP------------------QIKAVNFDL-PHVVQDAPSY------AG- 241 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~~------~~- 241 (360)
+++.+. ..+..+|+|.+||+|.++..+.+... ...++++|+ +.+++.|+.. ..
T Consensus 161 mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~ 239 (541)
T 2ar0_A 161 IIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 239 (541)
T ss_dssp HHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred HHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence 344443 45567999999999999988776532 236888888 7777766531 22
Q ss_pred ----cEEEecCCCC-C-CC--CCcEEEeccccccCC------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 242 ----VEHVGGNMFE-S-VP--EGDAILMKWILHCWD------------DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 242 ----v~~~~~d~~~-~-~~--~~D~i~~~~vlh~~~------------~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.+..+|.+. + .+ ..|+|+++--+.... ...-..+++++.+.|||||++.++-+
T Consensus 240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 240 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 7899999987 3 22 239999864433211 11123789999999999999999864
No 284
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.77 E-value=5.1e-05 Score=59.32 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=60.4
Q ss_pred CCcceEEEEcCCcc-hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCC----CCcEEEeccccccCC
Q 018145 196 QNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP----EGDAILMKWILHCWD 269 (360)
Q Consensus 196 ~~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~----~~D~i~~~~vlh~~~ 269 (360)
..+.+|||||||+| ..+..|++. .+..++++|+ |..++ ++..|++++.. ..|+|+..+ |
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 44679999999999 588877764 3677888887 55544 89999999654 339998765 4
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.+....+.++.+.. |.-++|.-.
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 566777777777765 456666443
No 285
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.72 E-value=1.9e-05 Score=73.26 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=70.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-------CC-cEEEecCCCCC----CCCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFES----VPEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~d~~~~----~~~~-D~i~ 260 (360)
.++.+|||++||+|.++..++++.++ .+++.+|+ +..++.++++ ++ ++++.+|+.+. .+.. |+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35689999999999999999998765 57899998 8888776642 34 89999998662 1223 9998
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+.- . .. ...++..+.+.|+|||.|++..
T Consensus 131 lDP--~--g~--~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP--F--GT--PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC--S--SC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC--C--cC--HHHHHHHHHHHhCCCCEEEEEe
Confidence 854 1 11 1358999999999999877765
No 286
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.66 E-value=0.00019 Score=60.55 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=70.0
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC---CCC--CCcEEEec-CCCC-CCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA---PSY--AGVEHVGG-NMFE-SVPE 255 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~~--~~v~~~~~-d~~~-~~~~ 255 (360)
...++.+.+. +++..+||||||++|.++...+....-.+++++|+ +.-.+.- +.. +.|+|+.+ |++. +...
T Consensus 66 KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 66 KLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 3456666664 77888999999999999997777766567899997 2222211 111 67999999 9765 3223
Q ss_pred CcEEEeccccccCChh--H---HHHHHHHHHHhCCCCcEEEE
Q 018145 256 GDAILMKWILHCWDDD--H---CLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~--~---~~~~L~~i~~~LkpgG~lli 292 (360)
.|+|+|--.=.. +.+ + ..++|.-+.++|++ |-++|
T Consensus 145 ~DtllcDIgeSs-~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 145 CDTLLCDIGESS-PSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CSEEEECCCCCC-SCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred ccEEEEecCCCC-CChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 599987322211 111 1 23467777899999 77776
No 287
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.64 E-value=0.00018 Score=61.59 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=63.6
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhh--CCCCeE--EEecchhHHHhCCCCCCc---EEEec-CCCCCCC-C
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK--YPQIKA--VNFDLPHVVQDAPSYAGV---EHVGG-NMFESVP-E 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~--~~~D~~~~~~~a~~~~~v---~~~~~-d~~~~~~-~ 255 (360)
..+|-++. -++++.+|||+||+.|.++...++. ...+.+ ++.|+ +.........++ .|..+ |+++..+ .
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 44566655 3788999999999999999988775 211122 33342 111111111455 55557 9987333 3
Q ss_pred CcEEEecccc---ccCChhH-HHHHHHHHHHhCCCCc-EEEEEee
Q 018145 256 GDAILMKWIL---HCWDDDH-CLRILKNCYKAVPGNG-KVIVMNS 295 (360)
Q Consensus 256 ~D~i~~~~vl---h~~~~~~-~~~~L~~i~~~LkpgG-~lli~e~ 295 (360)
.|+|++-..= +..-|+. ...+|.-+.+.|+||| .+++--+
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 4999873321 1111111 2235777889999999 8887433
No 288
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.59 E-value=6.1e-05 Score=52.62 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=52.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcC-cHHHHHHHHhcCcceeecccCCCceeecchhchhh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM-MLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~-~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~ 112 (360)
.+-.|++.|...||.|+.+||+.+|+ ... .+++.|..|...|+|...+...+ .|.+|+.+...
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~~~ 75 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKRER 75 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHHTT
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHHhH
Confidence 35567788888899999999999999 887 99999999999999986543334 89999988643
No 289
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.59 E-value=0.0006 Score=61.19 Aligned_cols=144 Identities=10% Similarity=0.027 Sum_probs=93.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---------CCCcEEEecCCCCCCC----------CC-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESVP----------EG- 256 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~~----------~~- 256 (360)
+...||+||||-=.....+.. .++++++.+|.|.+++..++ .++..++..|+.+.+. ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456799999998877666542 12488999999988875432 3568899999876211 11
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhh-hHH-Hhh-----hcCCCcc-CC
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL-DVL-LMT-----RDGGGRE-RT 328 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~-~t 328 (360)
=++++-.+||++++++...+|+.+.+.+.||+.|++ |.+.++.+ .......... ... ... -..+... ++
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD--EWREQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS--HHHHHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc--chhHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 577889999999999999999999999999888776 44443321 0000000000 000 000 0001112 25
Q ss_pred -HHHHHHHHHHcCCcee
Q 018145 329 -KKEYTELAIAAGFKGI 344 (360)
Q Consensus 329 -~~e~~~ll~~aGf~~~ 344 (360)
.++..++|.+.||+.+
T Consensus 258 ~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCCHHHHHTTTTEEEE
T ss_pred ChHHHHHHHHHCcCccc
Confidence 6789999999999987
No 290
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.56 E-value=3.5e-05 Score=70.49 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=70.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------------CCcEEEecCCCCCC------C-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFESV------P- 254 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~d~~~~~------~- 254 (360)
++.+||=||+|.|..++++++. |..+++.+|+ |.+++.+++. +|++++.+|....+ .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999985 4578888888 8888877541 46899999987521 1
Q ss_pred CCcEEEecccccc-------CC-hhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 255 EGDAILMKWILHC-------WD-DDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 255 ~~D~i~~~~vlh~-------~~-~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..|+|+.-..=.. .. ..-...+++.++++|+|||.++..-
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 2399987421110 01 0113467899999999999988753
No 291
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.53 E-value=0.00032 Score=69.92 Aligned_cols=100 Identities=10% Similarity=0.001 Sum_probs=67.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCC---CCeEEEecc-hhHHHhC--C----C----C--CCcEEEecCCCCC--CC-C-
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDA--P----S----Y--AGVEHVGGNMFES--VP-E- 255 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~----~--~~v~~~~~d~~~~--~~-~- 255 (360)
.++.+|||.|||+|.++..+++..+ ..+++++|+ +.+++.| + . + ....+...|+..+ .+ .
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3568999999999999999998876 357889988 7776665 1 1 1 1235556666652 12 2
Q ss_pred CcEEEecccc---ccCChh------------------------HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 GDAILMKWIL---HCWDDD------------------------HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~D~i~~~~vl---h~~~~~------------------------~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.|+|+++=-. ...+.. -...+++++.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3999984333 111110 123478899999999999999875
No 292
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.49 E-value=5.9e-05 Score=73.13 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=71.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC---------------CCeEEEecc-hhHHHhCCCC-------CCc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP---------------QIKAVNFDL-PHVVQDAPSY-------AGV 242 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~~v 242 (360)
..+++.+. .. ..+|+|.+||+|.++..+.+..+ ...++++|+ +.+++.|+.. .++
T Consensus 235 ~lmv~ll~-p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i 312 (544)
T 3khk_A 235 TLIVEMLE-PY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNF 312 (544)
T ss_dssp HHHHHHHC-CC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBC
T ss_pred HHHHHHHh-cC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 33444443 23 34999999999999888765432 467899998 7777776532 234
Q ss_pred EEEecCCCC-C-CCC-C-cEEEeccccc--cCChh-------------------------HHHHHHHHHHHhCCCCcEEE
Q 018145 243 EHVGGNMFE-S-VPE-G-DAILMKWILH--CWDDD-------------------------HCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 243 ~~~~~d~~~-~-~~~-~-D~i~~~~vlh--~~~~~-------------------------~~~~~L~~i~~~LkpgG~ll 291 (360)
.+..+|.+. + .+. . |+|+++=-+. .|..+ .--.+++++.+.|+|||++.
T Consensus 313 ~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 313 GKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp CSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred ceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence 458888876 3 232 2 9999842222 12110 11258999999999999999
Q ss_pred EEee
Q 018145 292 VMNS 295 (360)
Q Consensus 292 i~e~ 295 (360)
++-+
T Consensus 393 iVlP 396 (544)
T 3khk_A 393 LLLA 396 (544)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8864
No 293
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.48 E-value=0.00085 Score=58.54 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=69.0
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHh---CCCC--CCcEEEec-CCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD---APSY--AGVEHVGG-NMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~~--~~v~~~~~-d~~~-~~~~~ 256 (360)
..++.+.+. +++..+||||||++|.++...+....-.+++++|+ ..-.+. .++. +-|.++.+ |++. +....
T Consensus 83 L~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 83 LRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 445666654 67778999999999999997777665557889997 221111 1111 34889988 8766 32234
Q ss_pred cEEEeccccccCChhH-----HHHHHHHHHHhCCCC-cEEEE
Q 018145 257 DAILMKWILHCWDDDH-----CLRILKNCYKAVPGN-GKVIV 292 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~-----~~~~L~~i~~~Lkpg-G~lli 292 (360)
|+|+|--. .--+.+. ..++|.-+.++|++| |-++|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 98887433 2222221 234677778999999 88887
No 294
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.43 E-value=0.00011 Score=55.18 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=55.1
Q ss_pred hhChhhHhhhCCCCCHHHHHHHh--CcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCC
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~--~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~ 116 (360)
+..|++.|.+.|+.|+.+||+.+ |+ .+..+++-|+.|...|+|+.. ..+.|++|+.+..++...
T Consensus 15 d~~IL~~L~~~g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 15 DDRILEIIHEEGNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---ANGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHSCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---STTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---CCceEEECchHHHHHHHH
Confidence 46688888776799999999999 99 889999999999999999974 334899999998777653
No 295
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.40 E-value=4.8e-05 Score=66.43 Aligned_cols=71 Identities=10% Similarity=0.199 Sum_probs=51.8
Q ss_pred CCCc--ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhH-------HHhCCC-------C-CCcEEEecCCCC---CC
Q 018145 195 FQNV--ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV-------VQDAPS-------Y-AGVEHVGGNMFE---SV 253 (360)
Q Consensus 195 ~~~~--~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~~v~~~~~d~~~---~~ 253 (360)
.+++ .+|||+|||+|..+..+++. +.+++++|. +.+ ++.++. . .+++++.+|..+ ..
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4455 79999999999999999998 457999998 543 333321 1 368999999876 23
Q ss_pred CCC-cEEEecccccc
Q 018145 254 PEG-DAILMKWILHC 267 (360)
Q Consensus 254 ~~~-D~i~~~~vlh~ 267 (360)
++. |+|++.-.+++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 333 99999776655
No 296
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.37 E-value=0.00051 Score=66.46 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=70.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhC---CCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC-CCC---C--CcE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-SVP---E--GDA 258 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~~---~--~D~ 258 (360)
.+.+|+|.+||+|.++..+.+.. +...++++|+ +.+...|+.. +++.+..+|.+. ++| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999888875 3567899998 7777766531 357899999987 333 2 299
Q ss_pred EEecccc-ccC------------------Ch--hHHHHHHHHHHHhCC-CCcEEEEEee
Q 018145 259 ILMKWIL-HCW------------------DD--DHCLRILKNCYKAVP-GNGKVIVMNS 295 (360)
Q Consensus 259 i~~~~vl-h~~------------------~~--~~~~~~L~~i~~~Lk-pgG~lli~e~ 295 (360)
|+++=-+ ..| ++ ..--.+++++.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 9975111 011 10 001258999999999 9999998764
No 297
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.32 E-value=0.00069 Score=56.62 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=59.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC---------CCCcEEEecCCCCC-------------
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFES------------- 252 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~------------- 252 (360)
.+..+||||||| .-+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|+.+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 346899999985 55556666 45788888886 666555543 24699999996431
Q ss_pred -----------CC--C-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 253 -----------VP--E-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 253 -----------~~--~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+ . .|+|++-.-. ....+..+.+.|+|||.|++-+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeC
Confidence 12 2 2999985421 1355666779999999885533
No 298
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.17 E-value=0.00023 Score=66.19 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=50.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCCC-----CCcEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP-----EGDAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~~-----~~D~i~~ 261 (360)
++.+|||+|||+|..+..+++. ..+++++|. +.+++.++.+ .+++++.+|+.+..+ ..|+|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 4689999999999999998887 468888888 8888877542 368999999987321 2399998
No 299
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.13 E-value=0.0012 Score=58.22 Aligned_cols=96 Identities=19% Similarity=0.124 Sum_probs=66.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC-----CCCeEEEecc-hh--------------------------HHHhCCC-----
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PH--------------------------VVQDAPS----- 238 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~~----- 238 (360)
..+.+|||+|+..|..+..+++.. ++.+++++|. .. .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 456899999999999988877654 4778888883 11 1111211
Q ss_pred ---CCCcEEEecCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 239 ---YAGVEHVGGNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 239 ---~~~v~~~~~d~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.++|+++.||+.+. .+.. |+|++=.-.+ +.....|..+...|+|||.+++-+.
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 16799999999763 3222 8887754221 2345789999999999998877443
No 300
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.10 E-value=0.0054 Score=61.41 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=103.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCC--------CCeEEEecchhHHHhCCC------------------------------
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYP--------QIKAVNFDLPHVVQDAPS------------------------------ 238 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 238 (360)
+...|+-+|||.=.....+...+| +++++-+|+|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 468999999999999999988755 788999999887763211
Q ss_pred CCCcEEEecCCCC--CC----------CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc
Q 018145 239 YAGVEHVGGNMFE--SV----------PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 304 (360)
Q Consensus 239 ~~~v~~~~~d~~~--~~----------~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~ 304 (360)
.++..++..|+.+ .+ ... -++++-.+|.+++.+.+.++|+.+.+ + |+|.+++.|.+.+..+..+
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 0378899999987 21 222 57788999999999999999999985 4 7889999898876533322
Q ss_pred hhhhhhhhhhHHHhhhc--CCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 305 SAARETSLLDVLLMTRD--GGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 305 ~~~~~~~~~~~~~~~~~--~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
. .... ...+...... ......+.++..+.|.+.||+.+...++
T Consensus 265 f-~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 265 F-SKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp H-HHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred H-HHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 1 1110 1111110000 0012347899999999999998776543
No 301
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.07 E-value=0.00049 Score=60.22 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=53.0
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE 251 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~ 251 (360)
..+++++.+. .+++..+||.+||.|..+..+++. +.+++++|. |.+++.+++. ++++++.+|+.+
T Consensus 10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 3456677666 667789999999999999999998 778999998 8887665432 589999999876
No 302
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.96 E-value=0.00065 Score=49.59 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=49.1
Q ss_pred HHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
.-.++.|++.| . |+.|..+||+.+|+ ++.-+.+.|+.|...|+|.+. . +.|.+++.+.
T Consensus 30 ~~~r~~Il~~L-~-~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---~-g~y~l~~~g~ 87 (96)
T 1y0u_A 30 NPVRRKILRML-D-KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---G-ERWVVTDAGK 87 (96)
T ss_dssp CHHHHHHHHHH-H-TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECTTTC
T ss_pred CHHHHHHHHHH-c-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---C-CEEEECCCch
Confidence 34466678888 5 68999999999999 889999999999999999974 3 5899988764
No 303
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.96 E-value=0.00042 Score=46.91 Aligned_cols=54 Identities=9% Similarity=0.269 Sum_probs=44.8
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
+..|++.|... +++|..+||+.+|+ +...+.+.+..|...|+|.. ...++|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~---~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSS---PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEE---EETTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEec---CCCceEeeC
Confidence 45677888764 38999999999999 89999999999999999986 345778764
No 304
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.86 E-value=0.0011 Score=46.54 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=47.8
Q ss_pred HhhChhhHhhhCC---CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhh
Q 018145 45 IQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (360)
Q Consensus 45 ~~lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~ 112 (360)
.+..|++.|.+.| ++|+.+||+++|+ +..-+++.|..|...|+|...+ ..++.|...+....+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC------
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHHhc
Confidence 3555777887766 7999999999999 8889999999999999998754 355788777665433
No 305
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.86 E-value=0.0006 Score=47.53 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=47.9
Q ss_pred HhhChhhHhhhCC---CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 45 IQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 45 ~~lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
.+..|++.|...| +.|+.+||+++|+ +..-+.+.|..|...|+|...+ ..++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence 3566778888876 8999999999999 8889999999999999998864 3456776654
No 306
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.83 E-value=0.00047 Score=50.49 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=54.1
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc---cCCCceeecchhchhh
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV---SGGERLYALNPVSKYF 112 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~---~~~~~~y~~t~~s~~~ 112 (360)
.++..-.++.|+..|...++.|..+||+.+|+ ++..+.+.|+.|...|+|.+.. ......|.+|+.+...
T Consensus 11 ~~l~~~~~~~iL~~L~~~~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~ 83 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEE 83 (100)
T ss_dssp HHHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHH
T ss_pred cccCChHHHHHHHHHHhcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHH
Confidence 44555567778888865568999999999999 8999999999999999999642 1222368888877543
No 307
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.79 E-value=0.00084 Score=49.05 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=48.4
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
-.++.|+..|...++.|..+||+.+|+ ++..+.+.|+.|...|+|.+........|.+++.+
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~ 85 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA 85 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 345667777777569999999999999 89999999999999999997532233357666554
No 308
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.75 E-value=0.0042 Score=48.50 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=49.6
Q ss_pred HHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
+..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..++.
T Consensus 36 t~~~~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 36 TPPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence 3567778888888789999999999999 889999999999999999985321122 3778888876554
No 309
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.75 E-value=0.0022 Score=47.27 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCce
Q 018145 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (360)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~ 102 (360)
+....+++.+...+. +.|+..|.. |+.|+.+||+.+|+ .+..+.+.|+.|...|+|..........
T Consensus 11 ~~~~~~~~~l~~~~r---------~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (102)
T 3pqk_A 11 NEVANLLKTLSHPVR---------LMLVCTLVE-GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNIKQIF 76 (102)
T ss_dssp HHHHHHHHHHCSHHH---------HHHHHHHHT-CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSSSCCE
T ss_pred HHHHHHHHHcCCHHH---------HHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 444445555555444 445566655 68999999999999 8889999999999999998753223345
Q ss_pred eecchh
Q 018145 103 YALNPV 108 (360)
Q Consensus 103 y~~t~~ 108 (360)
|++++.
T Consensus 77 y~l~~~ 82 (102)
T 3pqk_A 77 YRLTEA 82 (102)
T ss_dssp EEECSS
T ss_pred EEECcH
Confidence 776653
No 310
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.63 E-value=0.0013 Score=48.05 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=47.0
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
-.++.|+..|.. |+.|+.+||+.+|+ ++..+.+.|+.|...|+|..........|++++.
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (98)
T 3jth_A 23 ERRLQILCMLHN-QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSE 82 (98)
T ss_dssp HHHHHHHHHTTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCH
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHH
Confidence 345667777777 69999999999999 8999999999999999998753222335666654
No 311
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.62 E-value=0.0017 Score=49.62 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
--.++.|+..|...|+.|+.+||+.+|+ ++..+.+.|+.|...|+|..........|++++.
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~ 102 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDE 102 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHH
Confidence 3446678888875579999999999999 8999999999999999998742112225666654
No 312
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.55 E-value=0.0013 Score=48.08 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=52.2
Q ss_pred hhChhhHhhhCCCCCHHHH----HHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEI----AAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~l----a~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+| |+.+++ ++..+.+.++.|+..|+|.+........|.+|+.|..++.
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~ 78 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAI 78 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHH
Confidence 4456677766678999999 999999 8999999999999999999754333446888888886654
No 313
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.53 E-value=0.0025 Score=44.81 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=39.0
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
..|++.|...|+.|..+||+.+|+ ++.-+++.|+.|...|+|..
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 346777776678999999999999 89999999999999999985
No 314
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.52 E-value=0.0036 Score=56.10 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=55.1
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE 251 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~ 251 (360)
+.+++++.+. .+++..+||..||.|..+..+++.. |+.+++++|. |.+++.++.. +|++++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567777776 6778999999999999999999985 7899999999 8888887532 578888887754
No 315
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.43 E-value=0.0025 Score=47.86 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCC--HHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELS--APEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t--~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
++..+++.+.+.|...++. .|.. |+.+ +.+|++.+ |+ .+..+.+.|+.|...|+|++... ..
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~-g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-r~ 80 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN-GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG-QI 80 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS-SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES-SS
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc-CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec-Cc
Confidence 4445566666666655554 4444 5777 99999999 99 89999999999999999998542 35
Q ss_pred ceeecchhchhhhc
Q 018145 101 RLYALNPVSKYFVS 114 (360)
Q Consensus 101 ~~y~~t~~s~~~~~ 114 (360)
..|++|+.|..+..
T Consensus 81 ~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 81 TTYALTEKGMNVRN 94 (111)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEEECccHHHHHH
Confidence 68999999986653
No 316
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.31 E-value=0.0024 Score=44.66 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=47.4
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
.....|++.|.+.| .|+.+||+++|+ ....+++.|..|+..|+|.... ..+-.|.++....
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~~~ 77 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-DIPPRWFMTTEAD 77 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-SSSCEEESCC---
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCcceeccCcc
Confidence 34556777888764 999999999999 8899999999999999999753 3455777765543
No 317
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.30 E-value=0.0021 Score=48.25 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=47.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
.++.|+..|.. |+.|..+||+.+|+ ++.-+.+.|+.|...|+|.+........|.+|+.+.
T Consensus 22 ~r~~IL~~L~~-~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 22 TRWEILTELGR-ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 34556667744 68999999999999 899999999999999999874322223488777654
No 318
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.27 E-value=0.016 Score=46.38 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=53.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+. .+.+|+.|..++.
T Consensus 47 ~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 47 PQFTALSVLAAKPNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 35567888887789999999999999 899999999999999999986432222 4888888886654
No 319
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.25 E-value=0.004 Score=48.77 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=46.0
Q ss_pred hhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 54 AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 54 ~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
...++.|..+||+.+|+ ++..+.+.++.|...|+|.+. ....|.+|+.|..+..
T Consensus 18 ~~~~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~~ 71 (142)
T 1on2_A 18 EEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIGK 71 (142)
T ss_dssp HHHSSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHH
T ss_pred hhcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHHH
Confidence 33468999999999999 899999999999999999973 4578999999876543
No 320
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.23 E-value=0.002 Score=48.88 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=50.5
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.--.++.|+..|.. ||.|+.+||+.+|+ ++..+.+.|+.|...|+|..........|++++.+.
T Consensus 15 l~~~~R~~Il~~L~~-~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 15 LADPTRRAVLGRLSR-GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPF 79 (118)
T ss_dssp HTSHHHHHHHHHHHT-CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred hCCHHHHHHHHHHHh-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHH
Confidence 333456677777775 69999999999999 899999999999999999875322334688877553
No 321
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.21 E-value=0.0053 Score=48.26 Aligned_cols=99 Identities=10% Similarity=0.088 Sum_probs=63.0
Q ss_pred ccCCchhHHhHHHHHHHHHHHhhhHHHHH----HHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHh
Q 018145 12 QKKHEEEEEEEESYSHAMQLAMGVVLPMA----TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (360)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~ 87 (360)
|......+.-...+..+...+...+...+ =-+..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+
T Consensus 4 M~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le 79 (148)
T 3nrv_A 4 MQKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLE 79 (148)
T ss_dssp -CCSCGGGCHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHHHHSSSBCHHHHHHHHTC----CHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 33444444334444444444444433322 123456778888887789999999999999 8999999999999
Q ss_pred cCcceeecccC---CCceeecchhchhhhc
Q 018145 88 SHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 88 ~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
..|+|.+.... ....+.+|+.|..++.
T Consensus 80 ~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 80 EKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp HTTSEEC---------CCBEECHHHHHHHH
T ss_pred HCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 99999975321 1335788888876554
No 322
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=96.20 E-value=0.0066 Score=47.52 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=53.5
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+. .+.+|+.|..+..
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 346667778876678999999999999 899999999999999999985322222 4888888886653
No 323
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=96.20 E-value=0.0099 Score=51.89 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=60.1
Q ss_pred CCcceEEEEcC------CcchHHHHHHhhCCC-CeEEEecchhHHHhCCCCCCcEEEecCCCC-CCCCC-cEEEecc---
Q 018145 196 QNVERLVDVGG------GFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG-DAILMKW--- 263 (360)
Q Consensus 196 ~~~~~vLDiG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~~-D~i~~~~--- 263 (360)
+.+.+|||+|+ ..|.+ .+.+..|. ..++.+|+.++...+ . .++.||+.+ ..... |+|++-.
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAPN 180 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYDP 180 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCCT
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCCC
Confidence 45799999996 66774 34455776 689999985544322 1 458999765 23232 9998721
Q ss_pred ---c-cccC--ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 264 ---I-LHCW--DDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 264 ---v-lh~~--~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. -+.- ...-+..++.-+.+.|+|||.|++--
T Consensus 181 tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 181 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 1 1111 11246677888999999999999853
No 324
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.18 E-value=0.004 Score=54.84 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=46.0
Q ss_pred hChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 47 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|++.|...+ +.|+.|||+++|+ +..-+.|+|..|+..|+|.+. .+++|++.+..-
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~---~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS---ADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC---TTSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCcEEehHHHH
Confidence 45777777643 7999999999999 889999999999999999984 457899987543
No 325
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.17 E-value=0.028 Score=44.19 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=48.4
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec--ccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS--VSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~--~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++..| ..++.|..+||+.+++ ++..+.+.++.|+..|+|.+. ....+. .+.+|+.|..+..
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~ 108 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIK 108 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHH
T ss_pred HHHHHHHH-HcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHH
Confidence 44478888 6579999999999999 899999999999999999972 111222 4678888776553
No 326
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.16 E-value=0.0038 Score=43.42 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=39.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|.+.|.+.|.+|+++||+.+++ .+.-++|-|+.|+..|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 6778888889999999999999 999999999999999999984
No 327
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.16 E-value=0.011 Score=45.93 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=53.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~ 113 (360)
.++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ....|.+|+.|..+.
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45667888877679999999999999 899999999999999999986431 223588999998776
No 328
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.13 E-value=0.0035 Score=44.47 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=39.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|.+.|.+.|.+|+.+||+.+++ .+.-++|-|+.|+..|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 6778888889999999999999 999999999999999999984
No 329
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.12 E-value=0.028 Score=44.29 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=52.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee--cccCCC---ceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC--SVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~--~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+ .....+ -.+.+|+.|..++.
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence 35667777877779999999999999 89999999999999999998 432122 25888888876654
No 330
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.11 E-value=0.0042 Score=53.54 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=53.8
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
.++.++..|...++.|..+||+.+|+ ++.-+.|.|+.|...|+|.+. .....|.+|+.+..+..
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK----SEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHH
Confidence 35556777655579999999999999 999999999999999999985 35668999999987654
No 331
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.10 E-value=0.016 Score=45.39 Aligned_cols=65 Identities=9% Similarity=0.123 Sum_probs=51.4
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.|..++.
T Consensus 44 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 111 (150)
T 2rdp_A 44 QFVALQWLLEEGDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIE 111 (150)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHH
Confidence 4557777777679999999999999 89999999999999999998532112 24788888876553
No 332
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.02 E-value=0.0071 Score=46.79 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=52.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~s~~~~~ 114 (360)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+..... .-.+.+|+.|..+..
T Consensus 34 ~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (139)
T 3bja_A 34 VQFGVIQVLAKSGKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKK 102 (139)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHH
Confidence 45567778877679999999999999 8899999999999999999753211 224778888876653
No 333
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.01 E-value=0.023 Score=45.68 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=53.0
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..++.
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 345667888877679999999999999 899999999999999999985322222 4788888876554
No 334
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.00 E-value=0.0042 Score=47.09 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=46.2
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
-.++.|+..|.. |+.|..+||+.+|+ ++..+.+.|+.|...|+|........-.|++++.
T Consensus 21 ~~r~~IL~~L~~-~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~ 80 (118)
T 2jsc_A 21 PTRCRILVALLD-GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVATYEGRQVRYALADS 80 (118)
T ss_dssp HHHHHHHHHHHT-TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEECCEEEEEEChH
Confidence 345666777765 68999999999999 8999999999999999998742122235777654
No 335
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.99 E-value=0.0063 Score=44.17 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=47.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
|...+.. | .+..+||..+|+ +++.++..++.|...|+|.. ..+.|.+|+.|..++.
T Consensus 13 IL~~i~~-~-~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~----~~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 13 ILEACKS-G-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQ----EGKQYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHTT-C-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECHHHHHHHH
T ss_pred HHHHHHc-C-CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEE----ECCeeEEChhHHHHHH
Confidence 4455554 4 899999999999 99999999999999999997 3567999999997765
No 336
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.99 E-value=0.0065 Score=45.12 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=54.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cc
Q 018145 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ER 101 (360)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~ 101 (360)
..+++.+.+-|...+| ..|.. |+.+..+|++.+ |+ ++..+.+.|+.|...|+|.+..... .-
T Consensus 5 ~~~l~~l~~~~~~~IL---------~~L~~-~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~ 70 (107)
T 2hzt_A 5 EATLEVIGGKWKXVIL---------XHLTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKV 70 (107)
T ss_dssp HHHHHHHCSTTHHHHH---------HHHTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEE
T ss_pred HHHHHHHcCccHHHHH---------HHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeE
Confidence 3455555555554444 34443 689999999999 99 8999999999999999999864311 12
Q ss_pred eeecchhchhhh
Q 018145 102 LYALNPVSKYFV 113 (360)
Q Consensus 102 ~y~~t~~s~~~~ 113 (360)
.|.+|+.|..+.
T Consensus 71 ~y~LT~~G~~l~ 82 (107)
T 2hzt_A 71 EYELSEYGRSLE 82 (107)
T ss_dssp EEEECTTGGGGH
T ss_pred EEEECccHHHHH
Confidence 588998876544
No 337
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.97 E-value=0.0044 Score=45.96 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=39.3
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|+..|.. |+.|+.+||+.+|+ ++..+.+.|+.|...|+|...
T Consensus 27 ~r~~IL~~L~~-~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 27 NRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 34556666665 68999999999999 899999999999999999874
No 338
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.95 E-value=0.02 Score=45.24 Aligned_cols=66 Identities=6% Similarity=0.057 Sum_probs=51.7
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~s~~~~~ 114 (360)
.++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+..... .-.+.+|+.|..++.
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 112 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAE 112 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHH
Confidence 35567777877679999999999999 8999999999999999999753211 124788888876654
No 339
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=95.94 E-value=0.022 Score=50.47 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCcceEEEEcCCcchHHHH----HHhhCCCCe--EEEecchhHHHhC------------------CC--CCC--cEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSM----ITSKYPQIK--AVNFDLPHVVQDA------------------PS--YAG--VEHVGG 247 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~----l~~~~p~~~--~~~~D~~~~~~~a------------------~~--~~~--v~~~~~ 247 (360)
...-+|||+|=|+|..... +.+..|+.+ ++.++. ..++.. .. ..+ +++..|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G 173 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG 173 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence 3457899999999976543 334567754 455542 111100 00 023 457778
Q ss_pred CCCCC---CCC--CcEEEeccccccC-ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc
Q 018145 248 NMFES---VPE--GDAILMKWILHCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 321 (360)
Q Consensus 248 d~~~~---~~~--~D~i~~~~vlh~~-~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (360)
|+.+. ++. .|++++-..--.- |+-.-..+++++++.++|||+|.- ++
T Consensus 174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt------------------------- 226 (308)
T 3vyw_A 174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS------------------------- 226 (308)
T ss_dssp CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC-------------------------
T ss_pred hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee-------------------------
Confidence 88662 333 2998874322111 111235789999999999998762 11
Q ss_pred CCCccCCHHHHHHHHHHcCCceeeEEecCCceeEEE
Q 018145 322 GGGRERTKKEYTELAIAAGFKGINFASCVCNLYIME 357 (360)
Q Consensus 322 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~ 357 (360)
....+++.|+++||++.++-..+..--++.
T Consensus 227 ------aag~VRR~L~~aGF~V~k~~G~g~KReml~ 256 (308)
T 3vyw_A 227 ------SSLSVRKSLLTLGFKVGSSREIGRKRKGTV 256 (308)
T ss_dssp ------CCHHHHHHHHHTTCEEEEEECC---CEEEE
T ss_pred ------CcHHHHHHHHHCCCEEEecCCCCCCCceeE
Confidence 123467889999999877755443333333
No 340
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.93 E-value=0.002 Score=48.08 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=43.3
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
++.|+..|.. |+.|+.+||+.+|+ ++..+.+.|+.|...|+|..........|.+++.
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~ 84 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGM----NLTTASANLQALKSGGLVEARREGTRQYYRIAGE 84 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCH
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 3445555655 68999999999999 8999999999999999998742112224655543
No 341
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.90 E-value=0.0041 Score=49.41 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=55.2
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchh
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY 111 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~ 111 (360)
..+|.--.++.|+..|.. |+.|+.+||+.+|+ .+..+.+.|+.|...|+|..........|++++.+..
T Consensus 52 l~aL~~p~R~~IL~~L~~-~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~ 120 (151)
T 3f6v_A 52 LEVAAEPTRRRLVQLLTS-GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLA 120 (151)
T ss_dssp HHHHTSHHHHHHHHHGGG-CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHH
Confidence 455556668888888885 69999999999999 8999999999999999998753223346888876643
No 342
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.89 E-value=0.0066 Score=47.02 Aligned_cols=65 Identities=23% Similarity=0.183 Sum_probs=51.5
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 36 ~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 4556777776678999999999999 899999999999999999985322222 4788888876654
No 343
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.86 E-value=0.023 Score=44.29 Aligned_cols=66 Identities=8% Similarity=0.020 Sum_probs=52.0
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
..++.++..|. .++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.|..++.
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 105 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFN 105 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHH
Confidence 34566777787 679999999999999 89999999999999999997532112 24788888876653
No 344
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.84 E-value=0.0077 Score=46.51 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCC-
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG- 99 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~- 99 (360)
.+++...++++.+-|...+|... .. |+.++.||++.+ |+ .+..+.+.|+.|+..|+|++....+
T Consensus 13 ~Cpi~~~l~~lg~kW~l~IL~~L---------~~-g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d 78 (131)
T 4a5n_A 13 GSPVEFTLDVIGGKWKGILFYHM---------ID-GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQV 78 (131)
T ss_dssp CCHHHHHHHHHCSSSHHHHHHHH---------TT-SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred CCcHHHHHHHHcCcCHHHHHHHH---------hc-CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 47788888999998887777543 33 589999999999 99 8999999999999999999864311
Q ss_pred --Cceeecchhchhhhc
Q 018145 100 --ERLYALNPVSKYFVS 114 (360)
Q Consensus 100 --~~~y~~t~~s~~~~~ 114 (360)
.-.|++|+.|..+..
T Consensus 79 ~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 79 PPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp SCEEEEEECTTGGGGHH
T ss_pred CCeEEEEECHhHHHHHH
Confidence 236999999987654
No 345
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.83 E-value=0.0071 Score=46.76 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=51.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 30 ~~~~iL~~l~~~~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 30 AQVACLLRIHREPGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHHHHSTTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 35556777777679999999999999 899999999999999999985321222 3778888776543
No 346
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.77 E-value=0.01 Score=46.50 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=53.5
Q ss_pred HHHhhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 43 AAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 43 ~a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
+..++.++..|.. .|+.|..+||+.+|+ ++..+.+.++.|+..|+|.+.... ..-.+.+|+.|..++.
T Consensus 34 ~~~~~~iL~~l~~~~~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 105 (147)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHH
Confidence 3456778888887 679999999999999 899999999999999999985321 2224788888876554
No 347
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.77 E-value=0.012 Score=53.51 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=39.9
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC---CCCCcEEEecCCCC
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFE 251 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~~v~~~~~d~~~ 251 (360)
...|||||.|.|.++..|++.....+++++++ +..+...+ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 57899999999999999998754345666655 43333221 34789999999976
No 348
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.75 E-value=0.0066 Score=47.05 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=52.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 39 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (140)
T 2nnn_A 39 TQWAALVRLGETGPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELE 107 (140)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHH
Confidence 46668888876679999999999999 899999999999999999985321112 4788888876543
No 349
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.72 E-value=0.0084 Score=44.92 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
.++...+++.+.+-|...+|. .|.. |+.+..+||+.+ ++ ++..+.+.|+.|+..|+|.+.....+
T Consensus 9 ~c~~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d 74 (112)
T 1z7u_A 9 QTSINLALSTINGKWKLSLMD---------ELFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNEL 74 (112)
T ss_dssp HHHHHHHHHTTCSTTHHHHHH---------HHHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred CCCHHHHHHHHcCccHHHHHH---------HHHh-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 456667777777777665544 3444 589999999999 99 89999999999999999998643111
Q ss_pred ---ceeecchhchhhh
Q 018145 101 ---RLYALNPVSKYFV 113 (360)
Q Consensus 101 ---~~y~~t~~s~~~~ 113 (360)
-.|.+|+.|..+.
T Consensus 75 ~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 75 PPRVEYTLTPEGYALY 90 (112)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECHhHHHHH
Confidence 2589999887654
No 350
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.71 E-value=0.014 Score=45.43 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=51.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..+..
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 34556777766679999999999999 89999999999999999998632122 25788888886654
No 351
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.69 E-value=0.0068 Score=42.63 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=41.0
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
.+..|++.|... ++.|+++|++.+ ++ +..-+.|.|+.|+..|+|.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence 455688888764 589999999999 88 8889999999999999999753
No 352
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.69 E-value=0.0064 Score=42.15 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=36.8
Q ss_pred hhhHhhhC------CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKA------GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~------g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|++.|... +|.|+.|||+.+|+ .+.-+++-|..|+..|+|.+.
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 44555544 69999999999999 778899999999999999985
No 353
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=95.68 E-value=0.011 Score=54.07 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=71.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC------------CCCCcEEEecCCCC--C-CCCC-c
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------------SYAGVEHVGGNMFE--S-VPEG-D 257 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~d~~~--~-~~~~-D 257 (360)
.+++.+|||+-+|.|.=+..+++..++..++..|. +.-++..+ ...++.+...|... + .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56789999999999999999999877777888887 43322211 11468888888765 2 2333 8
Q ss_pred EEEe----cc----c-------cccCChhHH-------HHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 258 AILM----KW----I-------LHCWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 258 ~i~~----~~----v-------lh~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.|++ +. + .+.+..++. .++|.++.+.|||||+|+-.+-...
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 8875 22 1 122222222 3689999999999999988775553
No 354
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.67 E-value=0.043 Score=43.50 Aligned_cols=66 Identities=9% Similarity=0.113 Sum_probs=50.5
Q ss_pred HhhChhhHh-hhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 45 IQLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L-~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.++.++..| ...++.|..+||+.+++ ++..+.++++.|+..|+|.+.....+ -.+.+|+.|..++.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 117 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK 117 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHH
Confidence 356688888 45569999999999999 88999999999999999998532111 23778888876653
No 355
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.67 E-value=0.0074 Score=46.04 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=45.1
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
.++.|+..|.. |+.++.+||+.+|+ .+..+.+.|+.|...|++........-.|++++.
T Consensus 47 ~rl~IL~~L~~-~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~ 105 (122)
T 1r1t_A 47 NRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH 105 (122)
T ss_dssp HHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 35567777765 68999999999999 8999999999999999998742112224655543
No 356
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.66 E-value=0.011 Score=46.15 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=50.4
Q ss_pred hhChhhHh-hhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L-~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..| ...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ -.+.+|+.|..+..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 107 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHH
Confidence 45577777 55579999999999999 89999999999999999998532111 24777877775543
No 357
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.66 E-value=0.019 Score=45.10 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=51.1
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhh
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~ 113 (360)
..++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..++
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 446677788877789999999999999 89999999999999999998532122 2477888887654
No 358
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.64 E-value=0.026 Score=43.95 Aligned_cols=66 Identities=8% Similarity=0.154 Sum_probs=52.9
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+ |..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 37 ~~~~~iL~~l~~~~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 37 YLDFSILKATSEEPR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 345678888888666 99999999999 999999999999999999986422222 4889998886654
No 359
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.59 E-value=0.0067 Score=52.25 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=48.6
Q ss_pred hChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhh
Q 018145 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (360)
Q Consensus 47 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~ 112 (360)
+.|++.|...+ +.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+. .++++|++++..-.+
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~--~~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEAL--GPAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEEC--GGGCEEEECSHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCCCeEEECHHHHHH
Confidence 45677776643 7999999999999 899999999999999999984 234789998765433
No 360
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.58 E-value=0.01 Score=51.39 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=47.9
Q ss_pred hhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 46 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
-+.|++.|...+ +.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+ ..++.|++++..-
T Consensus 10 ~l~iL~~l~~~~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~---~~~~~Y~lg~~~~ 68 (249)
T 1mkm_A 10 AFEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLR---KKDKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE---CTTSCEEECTHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE---CCCCcEEECHHHH
Confidence 345677776644 7999999999999 89999999999999999997 3467899987543
No 361
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.58 E-value=0.021 Score=45.57 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=51.5
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..++.
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence 4557777876679999999999999 89999999999999999998532112 25788888886654
No 362
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.56 E-value=0.0078 Score=46.98 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=52.7
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.... ..-.+.+|+.|..++.
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHH
Confidence 345667777776679999999999999 899999999999999999985321 1225788888876654
No 363
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.56 E-value=0.0098 Score=46.36 Aligned_cols=65 Identities=9% Similarity=0.046 Sum_probs=51.5
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ -.+.+|+.|..+..
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 98 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHCcCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHH
Confidence 4556777777678999999999999 89999999999999999998542212 24788888876653
No 364
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.54 E-value=0.005 Score=53.75 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=47.4
Q ss_pred hChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 47 LGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 47 lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|++.|.. .+++|+.|||+++|+ +..-+.|+|+.|+..|+|.+. .+.++|++.+.--
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~--~~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQV--EGARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEC--SSSSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEcCHHHH
Confidence 446677765 258999999999999 899999999999999999984 2347999987543
No 365
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.54 E-value=0.0096 Score=44.17 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
.++...+++.+.+-|...+|. .|.. |+.+..+|++.+ |+ ++..+.+.|+.|+..|+|.+.....+
T Consensus 12 ~c~~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d 77 (107)
T 2fsw_A 12 ECPVRKSMQIFAGKWTLLIIF---------QINR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEV 77 (107)
T ss_dssp TCHHHHHHHHHTSSSHHHHHH---------HHTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred CCCHHHHHHHHcCccHHHHHH---------HHHh-CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 356777778887777766554 3333 589999999999 59 89999999999999999998643211
Q ss_pred ---ceeecchhchhhh
Q 018145 101 ---RLYALNPVSKYFV 113 (360)
Q Consensus 101 ---~~y~~t~~s~~~~ 113 (360)
-.|.+|+.|..+.
T Consensus 78 ~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 78 PPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SCEEEEEECHHHHTTH
T ss_pred CCeeEEEECccHHHHH
Confidence 2599999887554
No 366
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.51 E-value=0.012 Score=45.51 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
..++...+++.+.+-|...+|.. |.. |+.+..+|++.+ |+ ++..+.+.|+.|+..|+|.+.....
T Consensus 21 ~~c~~~~~l~~l~~~w~l~IL~~---------L~~-g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~ 86 (131)
T 1yyv_A 21 EQCPSREVLKHVTSRWGVLILVA---------LRD-GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPV 86 (131)
T ss_dssp TTCTHHHHHHHHHSHHHHHHHHH---------GGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECS
T ss_pred CCCCHHHHHHHHcCCcHHHHHHH---------HHc-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCC
Confidence 34566777777777776655433 443 689999999999 79 8999999999999999999864321
Q ss_pred C---ceeecchhchhhh
Q 018145 100 E---RLYALNPVSKYFV 113 (360)
Q Consensus 100 ~---~~y~~t~~s~~~~ 113 (360)
+ -.|.+|+.|..+.
T Consensus 87 d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 87 VPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CCCeEEEEECccHHHHH
Confidence 1 2699999987654
No 367
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.50 E-value=0.037 Score=43.57 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=51.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ -.+.+|+.|..++.
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence 4457777776678999999999999 89999999999999999998532111 24778888776553
No 368
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.46 E-value=0.014 Score=46.01 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC--
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG-- 99 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~-- 99 (360)
.+++...++.+.+-|...+|.. |.. |+.+..+|++.+|+ ++..+.+.|+.|+..|+|++.....
T Consensus 11 ~c~~~~~l~~l~~~w~l~IL~~---------L~~-g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 11 SCPVARPLDVIGDGWSMLIVRD---------AFE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp SCTTTTTHHHHCSSSHHHHHHH---------HHT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred CCcHHHHHHHhCCchHHHHHHH---------HHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 3455566777777776655543 333 58999999999999 8999999999999999999864211
Q ss_pred Cceeecchhchhhh
Q 018145 100 ERLYALNPVSKYFV 113 (360)
Q Consensus 100 ~~~y~~t~~s~~~~ 113 (360)
.-.|.+|+.|..+.
T Consensus 77 ~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 77 HQEYRLTDKGRALF 90 (146)
T ss_dssp CEEEEECHHHHTTH
T ss_pred eEEEEECchHHHHH
Confidence 23799999887554
No 369
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.44 E-value=0.01 Score=46.31 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=52.7
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .|.+|+.|..+..
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 345667777776679999999999999 899999999999999999985321122 4788888876653
No 370
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.43 E-value=0.0072 Score=46.95 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=52.5
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 105 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence 346667778877678999999999999 899999999999999999985321222 3778888876553
No 371
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.41 E-value=0.014 Score=45.32 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=52.9
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ..-.+.+|+.|..+..
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 346667778877678999999999999 888999999999999999985421 1125778888876554
No 372
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.40 E-value=0.014 Score=44.89 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
++.|.++||+.+|+ ++..++++|+.|...|+|.... ...+.|.++..
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~-g~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR-GAYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC-CCCCceEeCCC
Confidence 48999999999999 9999999999999999998742 12366876643
No 373
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.40 E-value=0.064 Score=42.00 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=51.9
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ..-.+.+|+.|..+..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 109 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIIT 109 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHH
Confidence 5567778877679999999999999 899999999999999999985321 1125788888876543
No 374
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.37 E-value=0.015 Score=46.08 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=53.1
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~s~~~~~ 114 (360)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+..... .-.+.+|+.|..++.
T Consensus 44 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 113 (154)
T 2eth_A 44 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 113 (154)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence 446677888877679999999999999 8999999999999999999853211 224778888876653
No 375
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.36 E-value=0.022 Score=45.55 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
.++++.+.+... ..+++.|.++||+.+++ ++..++++|..|...|+|.... ..++.|.++.
T Consensus 28 yAlr~L~~LA~~---~~~~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar 88 (159)
T 3lwf_A 28 YGLTITLELAKR---IGDGPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR-GAHGGYVLNG 88 (159)
T ss_dssp HHHHHHHHHHHT---TTSCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-STTCEEEECS
T ss_pred HHHHHHHHHHhc---CCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec-CCCCceEecC
Confidence 444444444321 22348999999999999 9999999999999999999753 3456787663
No 376
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.33 E-value=0.077 Score=40.87 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=49.9
Q ss_pred hhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 46 QLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 46 ~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
++.++..|...+ +.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+.
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 455677777665 7999999999999 899999999999999999985421122 577888776554
No 377
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.31 E-value=0.012 Score=46.95 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=53.0
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ....+.+|+.|..++.
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 121 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYD 121 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 345667888887779999999999999 899999999999999999985321 1224788888876553
No 378
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.30 E-value=0.016 Score=45.30 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=49.6
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc---CCCceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~---~~~~~y~~t~~s~~~~~ 114 (360)
..++.|+..|...| .|..+||+.+|+ ++..+.+.++.|+..|+|.+... ...-.+.+|+.|..+..
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~ 106 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAE 106 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHH
Confidence 34666778888765 999999999999 89999999999999999997532 12235777877765543
No 379
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.27 E-value=0.045 Score=43.39 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=51.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..++.
T Consensus 52 q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 119 (159)
T 3s2w_A 52 QFPFLMRLYREDGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEP 119 (159)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHH
Confidence 3455777766679999999999999 89999999999999999998643222 25788888876654
No 380
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.26 E-value=0.015 Score=41.82 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=51.1
Q ss_pred hhChhhHhhhCCCCCHHHHHH-HhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAA-QLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~-~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
+..|+-.|.+.|+.|+.+||+ .+++ +...+.|-++.|...|+|+. .+++ +.+|+.|..++.
T Consensus 18 QfsiL~~L~~~~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKKDFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEK---SGDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHSTTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHHH
Confidence 455677787778999999999 9999 89999999999999999983 2334 999999987664
No 381
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.25 E-value=0.016 Score=46.16 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=50.8
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ....|.+|+.|..++.
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 118 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYE 118 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHH
Confidence 35667888877679999999999999 899999999999999999974311 1134778888876553
No 382
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=95.24 E-value=0.025 Score=44.82 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=45.9
Q ss_pred HhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 52 ~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
.|...|+.|..+||+.+|+ ++..+.+.|+.|...|+|.+. .+..+.+|+.|..+.
T Consensus 48 ~l~~~~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI---PWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE---TTTEEEECHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe---cCCceEEChhHHHHH
Confidence 4444468999999999999 899999999999999999973 456788998887654
No 383
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.24 E-value=0.011 Score=43.43 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=40.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|+..|...++.|..+||+.+|+ ++..+.+.|+.|...|+|.+.
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 35556667765569999999999999 999999999999999999975
No 384
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.18 E-value=0.057 Score=41.59 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=51.9
Q ss_pred HhhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~s~~~~~ 114 (360)
.++.++..|...| +.|..+||+.+++ ++..+.+.++.|+..|+|++..... .-.+.+|+.|..+..
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence 3555677777654 8999999999999 8999999999999999999864322 224778888876654
No 385
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.18 E-value=0.019 Score=41.50 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=47.5
Q ss_pred hhhHhhhCC-CCCHHHHHHHhCcCCCCCcCc-HHHHHHHHhcCcceeeccc-CCCceeecchhchhhhc
Q 018145 49 VFEIIAKAG-ELSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECSVS-GGERLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g-~~t~~~la~~~~~~~~~~~~~-~~~~L~~L~~~g~l~~~~~-~~~~~y~~t~~s~~~~~ 114 (360)
++..|...| +.|..+||+.+++ ++.. +.+.++.|+..|+|..... ...-.+.+|+.|..+..
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~ 84 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAE 84 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHH
Confidence 455555555 7999999999999 8889 9999999999999984321 12235788888876653
No 386
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.16 E-value=0.071 Score=51.40 Aligned_cols=109 Identities=13% Similarity=0.041 Sum_probs=68.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-------------CCCeEEEecc-hhHHHhCCCC------CCcEEE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPSY------AGVEHV 245 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~~v~~~ 245 (360)
..+++.+. ...+.+|+|-.||+|.+.....+.. ....+.++|+ +.+...|+-. +.-.+.
T Consensus 207 ~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~ 285 (530)
T 3ufb_A 207 RFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRID 285 (530)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEE
T ss_pred HHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccc
Confidence 33444444 4556799999999999988765532 1245788887 6666665421 334677
Q ss_pred ecCCCC-CCC------CCcEEEecccccc---------CC-----hhHHHHHHHHHHHhCC-------CCcEEEEEee
Q 018145 246 GGNMFE-SVP------EGDAILMKWILHC---------WD-----DDHCLRILKNCYKAVP-------GNGKVIVMNS 295 (360)
Q Consensus 246 ~~d~~~-~~~------~~D~i~~~~vlh~---------~~-----~~~~~~~L~~i~~~Lk-------pgG~lli~e~ 295 (360)
.+|.+. +.. ..|+|+.+=-+-. ++ .+.-..+++++.+.|| |||++.++-+
T Consensus 286 ~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 286 PENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp CSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 888775 321 1399998533311 10 1122356888888887 6999999865
No 387
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.12 E-value=0.02 Score=44.41 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 56 ~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
.++.|..+||+.+|+ ++..+.+.++.|+..|+|.+. . ..|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---~-~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---E-DGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---C-CeEEEChhHHHHH
Confidence 358999999999999 899999999999999999973 3 6799999887553
No 388
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.07 E-value=0.024 Score=42.71 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=40.9
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
-.++.|+..|.+ ++.|..+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 346667777777 68999999999999 999999999999999999864
No 389
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.04 E-value=0.02 Score=45.27 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=45.4
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+++++.+.+... .+++.|.++||+.+++ ++..++++|..|...|+|.... +.+.|.++...
T Consensus 15 yAl~~L~~La~~----~~~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r--G~GGy~L~~~p 75 (149)
T 1ylf_A 15 IAVHILSILKNN----PSSLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--GPGGAGLLKDL 75 (149)
T ss_dssp HHHHHHHHHHHS----CGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSCG
T ss_pred HHHHHHHHHHhC----CCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc--CCCceEeCCCh
Confidence 455555555432 2248999999999999 9999999999999999998753 26678776543
No 390
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=95.01 E-value=0.038 Score=43.26 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=43.6
Q ss_pred hhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ -.+.+|+.|..++.
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 112 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVE 112 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHH
Confidence 45567777665 69999999999999 88999999999999999997532112 24678888776554
No 391
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.99 E-value=0.036 Score=44.48 Aligned_cols=62 Identities=24% Similarity=0.420 Sum_probs=46.5
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+++++...+..- .+++.|.++||+.+++ ++..++++|..|...|+|.... ..++.|.++...
T Consensus 13 yAlr~l~~La~~----~~~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~p 74 (162)
T 3k69_A 13 VAVHSILYLDAH----RDSKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV-GKNGGYQLDLAL 74 (162)
T ss_dssp HHHHHHHHHHTT----TTSCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC-STTCEEECCSCG
T ss_pred HHHHHHHHHHhC----CCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec-CCCCCeEecCCh
Confidence 455555544432 2248999999999999 9999999999999999998653 345678877543
No 392
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.98 E-value=0.019 Score=45.24 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=52.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhcC
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVSN 115 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~~ 115 (360)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ..-.+.+|+.|..+...
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 35667778877679999999999999 899999999999999999985321 11258888888866543
No 393
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=94.94 E-value=0.015 Score=50.69 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=45.9
Q ss_pred hChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 47 LGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 47 lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|++.|.. .++.|+.|||+++|+ +..-+.|+|+.|+..|+|.+. ..+.|++++..-
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~---~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR---ADGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCeEEecHHHH
Confidence 445666653 358999999999999 899999999999999999984 333899987543
No 394
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.94 E-value=0.046 Score=42.83 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=49.0
Q ss_pred HHhhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...+ ++|..+||+.+++ ++..+.++++.|+..|+|.+.....+. .+.+|+.|..++.
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 34566777776443 7899999999999 899999999999999999985321222 3778888876654
No 395
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.94 E-value=0.01 Score=46.48 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=53.1
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhcC
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVSN 115 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~~ 115 (360)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ..-.+.+|+.|..++..
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 345667777776678999999999999 899999999999999999985321 12247888888866543
No 396
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.92 E-value=0.012 Score=43.04 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=43.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
.++.|+..|...|+.|+.+||+.+|+ .+..+.+.|+.|... ++........-.|++++.+
T Consensus 28 ~Rl~IL~~l~~~~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~ 87 (99)
T 2zkz_A 28 MRLKIVNELYKHKALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPK 87 (99)
T ss_dssp HHHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHH
Confidence 44556644433368999999999999 899999999999999 9986422222356666543
No 397
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.82 E-value=0.031 Score=43.85 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
++.|.++||+.+++ ++..++++|..|...|+|.... ..++.|.++..
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~ 73 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR-GAKGGYQLRVP 73 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS-SSSSEEEESSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC-CCCCCeeecCC
Confidence 38999999999999 9999999999999999998643 23467877643
No 398
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.76 E-value=0.023 Score=45.63 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=50.9
Q ss_pred HhhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 45 IQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.++.++..|.. .++.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..++.
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 35667777876 468999999999999 99999999999999999998532112 25788888876654
No 399
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.76 E-value=0.012 Score=45.14 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=50.7
Q ss_pred hhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cceeecchhchhhhc
Q 018145 46 QLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~s~~~~~ 114 (360)
++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.+..... .-.+.+|+.|..++.
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 45566777665 68999999999999 8899999999999999999853222 224778888876554
No 400
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=94.70 E-value=0.02 Score=49.76 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=48.5
Q ss_pred hChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 47 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
+.|++.|... ++.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+ +++.|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~----~~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAG----SGGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----CCCEEEEcHHHHHHH
Confidence 4566777643 48999999999999 89999999999999999997 348999988765443
No 401
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.61 E-value=0.015 Score=42.06 Aligned_cols=52 Identities=12% Similarity=0.274 Sum_probs=41.8
Q ss_pred CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 59 ~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
.|..+||+.+++ ++..+.++++.|+..|+|..........|.+|+.|..+..
T Consensus 31 ~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 31 VYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp EEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHH
Confidence 899999999999 8999999999999999994321112235899998886653
No 402
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=94.55 E-value=0.03 Score=47.21 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=46.0
Q ss_pred hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 55 ~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
..++.|..+||+.+++ ++..+.+.++.|...|+|.+. ....+.+|+.|..+..
T Consensus 17 ~~~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLVS 69 (214)
T ss_dssp SCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHHH
Confidence 3469999999999999 899999999999999999983 4468999999986653
No 403
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.41 E-value=0.032 Score=49.52 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=39.0
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 238 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 238 (360)
+...++..+. .++..|||++||+|.++.+.++. +.+++++|+ +.+++.+++
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 3455555543 45679999999999999988776 467899998 888887764
No 404
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.38 E-value=0.13 Score=42.19 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=54.5
Q ss_pred HHHhhChhhHhhh--CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 43 AAIQLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 43 ~a~~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
+..++.++..|.. .|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..++.
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 4556777788875 358999999999999 89999999999999999998643222 35889999886654
No 405
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.23 E-value=0.09 Score=42.08 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=49.0
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.....+. .+.+|+.|..++.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHH
Confidence 456667777763 49999999999999 889999999999999999986432222 4778888876654
No 406
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=94.22 E-value=0.022 Score=49.77 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=46.5
Q ss_pred hhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 46 QLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 46 ~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
-+.|++.|.. .++.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+ +++.|++++..
T Consensus 23 ~l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~----~~~~Y~Lg~~~ 79 (265)
T 2ia2_A 23 GLAVIRCFDHRNQRRTLSDVARATDL----TRATARRFLLTLVELGYVAT----DGSAFWLTPRV 79 (265)
T ss_dssp HHHHHHTCCSSCSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE----SSSEEEECGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----cCCEEEEcHHH
Confidence 3456676654 248999999999999 89999999999999999997 35889998754
No 407
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.13 E-value=0.024 Score=39.65 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=39.8
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|++.|...++.|+.+|++.++...+-.+.-+.++|+.|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 355677777766799999999999730000567899999999999999985
No 408
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.12 E-value=0.06 Score=38.86 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC-CCceeecchhchhhh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYALNPVSKYFV 113 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~~~~y~~t~~s~~~~ 113 (360)
++.+..+||+.+++ +...+.|.|..|...|+|.+.... .-+...+|+.|+.++
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 58899999999999 999999999999999999985431 122456777776554
No 409
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.72 E-value=0.093 Score=41.36 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=49.7
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++-.|... ++.+..+||+.+++ ++..+.++++.|+..|+|.+.....+. ...+|+.|..++.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 34455666543 36788999999999 999999999999999999986543333 4778888876654
No 410
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=93.69 E-value=0.054 Score=42.49 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=47.0
Q ss_pred hhhHhh--hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 49 VFEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~--~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++..|. ..|+.|..+||+.+++ ++..+.++++-|+..|+|++.....+. ...+|+.|..++.
T Consensus 40 vL~~L~~~~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 106 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVE 106 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHH
Confidence 444443 2358999999999999 999999999999999999986542222 3778888876653
No 411
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=93.61 E-value=0.06 Score=42.09 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=40.8
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|++.|...++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 7 d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4567888887789999999999999 89999999999999999985
No 412
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=93.50 E-value=0.064 Score=42.23 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=41.0
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|+..|...|+.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAGL----SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 35567788877779999999999999 89999999999999999986
No 413
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.49 E-value=0.033 Score=45.34 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=49.9
Q ss_pred HhhChhhHhhhCCC---CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~---~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.++.|+..|...++ .|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ -.+.+|+.|..++.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 141 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 141 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 35567777876543 899999999999 88899999999999999997532111 24778888876553
No 414
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.48 E-value=0.043 Score=41.75 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=39.7
Q ss_pred hhChhhHhhhCC-C-CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAG-E-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g-~-~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..|+..|...+ | .|+.+||+.+++ +..-+.|.|+.|...|+|.+.
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 556777777654 4 899999999999 999999999999999999974
No 415
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.37 E-value=0.025 Score=41.29 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=39.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++.|+..|-+.|+.|+.||++.++...+-.+.-+.++|+-|+..|+|.+.
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 56677777766799999999999851001456799999999999999985
No 416
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.27 E-value=0.038 Score=46.22 Aligned_cols=65 Identities=14% Similarity=-0.034 Sum_probs=51.3
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ ++..+.++++.|+..|+|.+.....+. .+.+|+.|..++.
T Consensus 50 q~~iL~~L~~~~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 50 EHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 4556777776679999999999999 899999999999999999985321112 6789999886654
No 417
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=93.21 E-value=0.056 Score=42.53 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=41.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|+..|...++.|..+||+.+|+ ++..+.+.++.|...|++.+
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 35668888887779999999999999 89999999999999999985
No 418
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.20 E-value=0.057 Score=40.03 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=38.7
Q ss_pred hhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++.|+..|...| +.|..+||+.+|+ +...+++.|..|...|+|...
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 445666664335 8999999999999 899999999999999999863
No 419
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.20 E-value=0.084 Score=43.93 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=49.2
Q ss_pred HHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceeecchhch
Q 018145 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSK 110 (360)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~~t~~s~ 110 (360)
++..-.++.|+..|.. ||.|..+||+.+|+ ++..+.+.|+.|...|+|..... ...-.|++|+.+.
T Consensus 11 aL~~~~rl~IL~~L~~-~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 11 VLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 3334455666667765 69999999999999 89999999999999999997532 1122577776543
No 420
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=93.18 E-value=0.063 Score=36.43 Aligned_cols=54 Identities=13% Similarity=0.277 Sum_probs=45.3
Q ss_pred hhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 46 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
+-.|++.|.+.| |+++.+||+++|+ +..-+...|..|-..|.|..+ ..-+|+++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP---kRCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT---SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---ETTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC---CCceeeCC
Confidence 456777887765 9999999999999 889999999999999999874 44567665
No 421
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=93.17 E-value=0.076 Score=42.42 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=41.1
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|++.|.+.++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 34567888887789999999999999 89999999999999999986
No 422
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.09 E-value=0.069 Score=41.88 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=44.6
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
.+++++.+.+..- . ++ |.++||+.+++ ++..++++|..|...|+|.... +.+.|.++...
T Consensus 9 ~yAl~~L~~La~~----~-~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r--G~GGy~Lar~p 68 (145)
T 1xd7_A 9 AVAIHILSLISMD----E-KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA--GVPGASLKKDP 68 (145)
T ss_dssp HHHHHHHHHHHTC----S-CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS--SSSSCEESSCG
T ss_pred HHHHHHHHHHHhC----C-CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec--CCCCceecCCH
Confidence 3455555544321 2 25 99999999999 9999999999999999998753 26678776543
No 423
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=92.99 E-value=0.031 Score=42.33 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=45.9
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhC----cCCCCCcCcHHHHHHHHhcCcceeecccCCCce---eecchhchhhh
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQ----AQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~----~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~---y~~t~~s~~~~ 113 (360)
++.|+..|...++.|..+||+.++ + .+.-+.++|+-|+..|+|.+... +.+ +.+|+.+..+.
T Consensus 12 ~~~vL~~l~~~~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~~~--~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 12 EWEVMNIIWMKKYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRKKD--NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEEEE--TTEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEEec--CCeEEEEEecCHHHHHH
Confidence 344566665556999999999999 5 68889999999999999998632 332 34666665443
No 424
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=92.90 E-value=0.091 Score=35.73 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=40.5
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
.++.|..++..|+.+||+++|+ +..-+.|.|.-|...|+|.... ..+-.|..+
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~-~~PP~W~~~ 72 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVP-SNPPKWFKN 72 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC-CSSCEEEEC
T ss_pred HHHhCCCCcchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCC-CCCCCccCC
Confidence 3446666545999999999999 8888999999999999998643 233345443
No 425
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=92.75 E-value=0.32 Score=36.47 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=52.6
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHhC--------cCCCCCc-CcHHHHHHHHhcCcceeecccC----CCceeecch
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQ--------AQNVKAP-MMLDRMLRLLVSHRVLECSVSG----GERLYALNP 107 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~~--------~~~~~~~-~~~~~~L~~L~~~g~l~~~~~~----~~~~y~~t~ 107 (360)
+....++-|+..|.. +|.+.-+|++.+. + ++ ..+.+.|+.|+..|+|+..... ....|++|+
T Consensus 10 ~~~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 10 RGWWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred ccchHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 444556667777876 5999999999983 6 77 8899999999999999876321 112689999
Q ss_pred hchhhhc
Q 018145 108 VSKYFVS 114 (360)
Q Consensus 108 ~s~~~~~ 114 (360)
.|...+.
T Consensus 85 ~G~~~l~ 91 (118)
T 2esh_A 85 QGKLYLR 91 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986543
No 426
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=92.58 E-value=0.1 Score=42.15 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=41.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|++.|...++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 34567888888789999999999999 89999999999999999985
No 427
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=92.55 E-value=0.13 Score=40.42 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=50.5
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHhC-cCCCCCcCcHHHHHHHHhcCcceeeccc--------CCCceeecchhchhhh
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVS--------GGERLYALNPVSKYFV 113 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~~-~~~~~~~~~~~~~L~~L~~~g~l~~~~~--------~~~~~y~~t~~s~~~~ 113 (360)
.++-|++.|... +..|+++|++.++ + ...-+.+.|+.|+..|+|..... .....|++|+.|..++
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 455566666543 3579999999999 8 88899999999999999995421 0112799999998766
Q ss_pred cC
Q 018145 114 SN 115 (360)
Q Consensus 114 ~~ 115 (360)
..
T Consensus 106 ~~ 107 (151)
T 3u1d_A 106 RA 107 (151)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 428
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=92.47 E-value=0.086 Score=41.56 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=40.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|+..|.+.++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 10 d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 10 DRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 4567888887789999999999999 89999999999999999986
No 429
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=92.43 E-value=0.091 Score=41.35 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=41.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|+..|...++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 35567888888789999999999999 89999999999999999985
No 430
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=92.27 E-value=0.078 Score=41.79 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=40.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|++.|.+.|+.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4567888887789999999999999 89999999999999999985
No 431
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=92.18 E-value=0.092 Score=41.98 Aligned_cols=46 Identities=11% Similarity=0.215 Sum_probs=42.0
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|++.|.+.|+.|..+||+++|+ .+..+.+-++.|...|++.+
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 45678899988889999999999999 89999999999999999985
No 432
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=92.17 E-value=0.099 Score=42.24 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=41.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|++.|.+.|..|..+||+++|+ .+..+.+-|+.|...|+|.+
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 45678888887789999999999999 89999999999999999985
No 433
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=92.11 E-value=0.11 Score=44.16 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
++.|..++|+++++ .+..+.+.++.|+..|+|.+........+.+|+.|..+..
T Consensus 26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence 36899999999999 9999999999999999999842222567999999987764
No 434
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=92.07 E-value=0.085 Score=40.91 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=39.9
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|+..|...++.|..+||+.+|+ ++..+.+.|+.|...|++.+
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 4557777877678999999999999 89999999999999999985
No 435
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.00 E-value=0.37 Score=37.26 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=36.6
Q ss_pred hhhHhh-hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~-~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++..|. ..++.|..+||+.+|+ ++..+.+.|+.|+..|+|.+.
T Consensus 31 il~~L~~~~~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 31 VYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 444553 2368999999999999 899999999999999999985
No 436
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.98 E-value=0.1 Score=38.08 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 56 ~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|..+||+.+|+ +..-+.+.|+.|...|+|.+.
T Consensus 34 ~~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 34 EKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 468999999999999 899999999999999999974
No 437
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.29 E-value=0.19 Score=41.39 Aligned_cols=49 Identities=10% Similarity=0.243 Sum_probs=43.1
Q ss_pred HHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
....+..|+..|.. |+.|..+||+.+|+ .+..+.+.++.|...|+|.+.
T Consensus 18 ~d~~~~~IL~~L~~-~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34556778888885 79999999999999 899999999999999999975
No 438
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=91.26 E-value=0.13 Score=39.25 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
..|.++||+.+|+ ++.-+.+.++.|...|+|.+.
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999984
No 439
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=91.08 E-value=0.39 Score=35.98 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=53.3
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHh------CcCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceeecch
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNP 107 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~~t~ 107 (360)
.+++-.+++=|+..|.. +|.+.-+|++.+ ++ ++..+...|+-|+..|+|+.... .....|++|+
T Consensus 6 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 80 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR-RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred HHHHChHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence 34445556666667776 599999999998 67 78899999999999999997532 1122599999
Q ss_pred hchhhhc
Q 018145 108 VSKYFVS 114 (360)
Q Consensus 108 ~s~~~~~ 114 (360)
.|+..+.
T Consensus 81 ~G~~~l~ 87 (117)
T 4esf_A 81 AGRQELE 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986654
No 440
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=90.79 E-value=0.13 Score=36.73 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=39.4
Q ss_pred hhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++.|+..|...| +++..+||+++++ +..-+.++|+.|+..|+|.+.
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 455677777633 8999999999999 999999999999999999953
No 441
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=90.66 E-value=0.17 Score=41.78 Aligned_cols=38 Identities=29% Similarity=0.224 Sum_probs=33.0
Q ss_pred hhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 53 IAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 53 L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+.+.| |.|..|||+.+|+ ....+.+.|+.|+..|++.+
T Consensus 18 ~~~~g~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 18 IEKNGYPPSVREIARRFRI----TPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp HHHHSSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC
T ss_pred HHHhCCCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEe
Confidence 33334 8999999999999 66689999999999999997
No 442
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=90.60 E-value=1.1 Score=39.92 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=54.9
Q ss_pred ceEEEEcCCc--chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCCcEEEeccccccCChhHHH
Q 018145 199 ERLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHCL 274 (360)
Q Consensus 199 ~~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~~ 274 (360)
.+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-+.-...|..+ ....+|+|+++ .++....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 108 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR 108 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHHH
Confidence 6899999874 344555555544347888887 5566655433222222233332 23345999886 3556677
Q ss_pred HHHHHHHHhCCCCcEEE
Q 018145 275 RILKNCYKAVPGNGKVI 291 (360)
Q Consensus 275 ~~L~~i~~~LkpgG~ll 291 (360)
.+++.+...++||..++
T Consensus 109 ~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 109 EIAKKLSYILSEDATVT 125 (314)
T ss_dssp HHHHHHHHHSCTTCEEE
T ss_pred HHHHHHhhccCCCcEEE
Confidence 88999999999987544
No 443
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=90.21 E-value=0.07 Score=39.51 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=50.7
Q ss_pred HHHHhhChhhHhhhCCCCCHHHHHHHh----CcCCCCCcCcHHHHHHHHhcCcceeecccCCCc----eeecchhchhhh
Q 018145 42 QAAIQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER----LYALNPVSKYFV 113 (360)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~~la~~~----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~----~y~~t~~s~~~~ 113 (360)
.-..++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+.|+..|+|++.....++ .|++|+.|+..+
T Consensus 7 ~g~l~~~IL~~L~~-~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 7 ALLIEYLILAIVSK-HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHHHH-SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 34455666777777 588888888775 77 888999999999999999985321122 499999998655
Q ss_pred c
Q 018145 114 S 114 (360)
Q Consensus 114 ~ 114 (360)
.
T Consensus 82 ~ 82 (108)
T 3l7w_A 82 V 82 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 444
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=90.07 E-value=0.054 Score=46.11 Aligned_cols=66 Identities=8% Similarity=0.158 Sum_probs=50.6
Q ss_pred HHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC-C-----Cceeecchhch
Q 018145 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-G-----ERLYALNPVSK 110 (360)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~-----~~~y~~t~~s~ 110 (360)
++.--.++.|+..|.. ||.|..+||+.+|+ .+..+.+.|+.|...|+|...... . ...|++++.+.
T Consensus 8 aL~~~~R~~IL~~L~~-g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 8 ILGNKVRRDLLSHLTC-MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHTSHHHHHHHHHHTT-TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 3444456678888876 69999999999999 889999999999999999972111 1 22588887664
No 445
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=89.99 E-value=0.49 Score=35.34 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=54.0
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHh--------CcCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceee
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYA 104 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~ 104 (360)
.++++-..++=|+..|.. +|.+.-+|.+.+ ++ ++..+...|+-|+..|+|+.... .....|+
T Consensus 6 ~~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~ 80 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYR 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEE
T ss_pred HHHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEE
Confidence 345555566667777776 599999999887 56 78889999999999999997521 1122599
Q ss_pred cchhchhhhc
Q 018145 105 LNPVSKYFVS 114 (360)
Q Consensus 105 ~t~~s~~~~~ 114 (360)
+|+.|+..+.
T Consensus 81 LT~~G~~~l~ 90 (116)
T 3f8b_A 81 LTEIGHENMR 90 (116)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9999986553
No 446
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=89.92 E-value=0.17 Score=43.64 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=51.7
Q ss_pred HhhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|...+ +.|..+||+.+++ ++..+-++++-|+..|+|.+.....+. ...+|+.|..++.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~ 229 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAE 229 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHH
Confidence 4556777777643 5899999999999 899999999999999999997543333 4677888876554
No 447
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=89.81 E-value=0.26 Score=37.03 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=54.9
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHhC------cCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceeecc
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALN 106 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~------~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~~t 106 (360)
.+++.-..++-|+..|.. +|.+.-+|++.+. + ++..+...|+.|...|+|+.... .....|++|
T Consensus 8 ~~l~~g~l~~~IL~lL~~-~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT 82 (117)
T 3elk_A 8 ERILHGLITLYILKELVK-RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT 82 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred HHHHhhHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 345556666777778876 5999999999886 6 67889999999999999997532 011269999
Q ss_pred hhchhhhc
Q 018145 107 PVSKYFVS 114 (360)
Q Consensus 107 ~~s~~~~~ 114 (360)
+.|+..+.
T Consensus 83 ~~G~~~l~ 90 (117)
T 3elk_A 83 DAGKKFLC 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99986654
No 448
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=89.78 E-value=0.26 Score=38.10 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=40.4
Q ss_pred HhhChhhHhhh-CCCCCHHHHHHHhC----cCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAK-AGELSAPEIAAQLQ----AQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~-~g~~t~~~la~~~~----~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|+..|.. .++.|..+|++.++ + ++.-+.++|+-|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~----~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDL----AYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 45667777876 47999999999998 6 778899999999999999985
No 449
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=89.62 E-value=0.26 Score=35.85 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=38.7
Q ss_pred HHHHHhhChhh-HhhhCCCC-CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 41 TQAAIQLGVFE-IIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 41 l~~a~~lglfd-~L~~~g~~-t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.-.++..|.+ .+..+..+ |..+||+.+|+ ...-+++-|+.|...|+|...
T Consensus 16 l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 16 VATHFRTLIKSGELAPGDTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 33444445555 34443355 99999999999 888999999999999999874
No 450
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=89.26 E-value=0.43 Score=41.63 Aligned_cols=97 Identities=11% Similarity=-0.027 Sum_probs=68.0
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCCC----CC---CCcEEEecccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFES----VP---EGDAILMKWIL 265 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~----~~---~~D~i~~~~vl 265 (360)
+..+||+=+|||.++.+.++ +.-+++.+|. +..++..+++ .+++++..|.+.. .| ..|+|++-=-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 46789999999999999999 3477888888 6666554443 5799999997651 12 23999884332
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEEeeecC
Q 018145 266 HCWDDDHCLRILKNCYK--AVPGNGKVIVMNSIVP 298 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~--~LkpgG~lli~e~~~~ 298 (360)
.. .++..++++.+.+ .+.|+|.++|.=++..
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 21 1245566666665 4568999999887764
No 451
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=89.07 E-value=0.26 Score=41.84 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=41.2
Q ss_pred CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 60 t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
+..+||+.+++ ++..+.+.|+.|+..|+|++. .+..+.+|+.|..+..
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA---GDRHLELTEKGRALAI 73 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe---CCccEEECHHHHHHHH
Confidence 44999999999 889999999999999999984 4467899999876643
No 452
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=88.91 E-value=0.64 Score=39.42 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=43.6
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
.-|.-.|.. |+.|.++||+.+|+ +++-+...|.-|...|+|.+ ..++...+..
T Consensus 168 ~~l~~~l~~-~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~---~~~~~~~~~~ 220 (232)
T 2qlz_A 168 AILHYLLLN-GRATVEELSDRLNL----KEREVREKISEMARFVPVKI---INDNTVVLDE 220 (232)
T ss_dssp HHHHHHHHS-SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEE---ETTTEEEECH
T ss_pred HHHHHHHhc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEE---ecCCeEEecH
Confidence 455566666 69999999999999 99999999999999999986 3566665553
No 453
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=88.90 E-value=6.8 Score=30.31 Aligned_cols=92 Identities=18% Similarity=0.099 Sum_probs=52.3
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-C------CCCCcEEEecccc
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-S------VPEGDAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~------~~~~D~i~~~~vl 265 (360)
.....+|+=+|+|. |......+... +.+++++|. ++.++.++...++.++.+|..+ + ....|+|+..-
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~-- 92 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT-- 92 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS--
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe--
Confidence 34567899998864 33333333333 457888886 6666666523456777777654 1 11238887753
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
+++.....+..+.+.+.|..+++.
T Consensus 93 ---~~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 93 ---NDDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp ---SCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred ---CCcHHHHHHHHHHHHHCCCCeEEE
Confidence 233344455555666666665554
No 454
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=88.85 E-value=0.25 Score=46.80 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=51.5
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
-+..|+..|.+. +++|..+||+.+++ ++..+-|+++-|+..|+|.+.....+. ...+|+.|+.++
T Consensus 405 ~q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 405 EEIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 356677888776 78999999999999 999999999999999999986542222 466777776544
No 455
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=88.73 E-value=0.64 Score=30.69 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=39.5
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+-.|++.|...||.++-.||+.+|++ ...-+.+.|..|...|+|..+
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGlk---tAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGMR---TAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTCC---SGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCcc---hhhhcCHHHHHHHHccCcCCC
Confidence 44588889888999999999999993 333489999999999999763
No 456
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=88.70 E-value=0.24 Score=38.80 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=41.2
Q ss_pred hChhhHhhhC-----CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 47 LGVFEIIAKA-----GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 47 lglfd~L~~~-----g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
+.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|... ...+. ...+|+.|..++.
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~-~~~DrR~~~v~LT~~G~~~~~ 106 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM-AGADARCKRIELTAKGRAALQ 106 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee-CCCCCCeeEEEECHHHHHHHH
Confidence 3445555432 36899999999999 999999999999999999542 11212 4677777775543
No 457
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=88.58 E-value=0.38 Score=36.77 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=46.2
Q ss_pred HHHHhhChhhHhhhC-CCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeecccC-CCceeec
Q 018145 42 QAAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYAL 105 (360)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~~~~y~~ 105 (360)
.+-.+.-|++.|... ++.|+++|.+.+ ++ +..-+.|.|+.|+..|+|.+.... +..+|..
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 355677788888754 489999999999 66 777899999999999999976432 2235654
No 458
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=88.57 E-value=0.19 Score=37.93 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=40.3
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|+..|-..||.|..+||+.++...+-++.-+.++|+-|+..|+|.+.
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677777776799999999999741001577899999999999999985
No 459
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=88.32 E-value=0.57 Score=39.55 Aligned_cols=50 Identities=10% Similarity=0.210 Sum_probs=42.3
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
+.+..+||+.+++ ++..+.+.++.|...|+|.+ .....+.+|+.|+.+..
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r---~~~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVV---ASDRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---CTTSBEEECHHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE---eCCCCeEECHHHHHHHH
Confidence 3356999999999 88999999999999999998 34567999999886543
No 460
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=88.20 E-value=0.31 Score=38.13 Aligned_cols=69 Identities=10% Similarity=0.176 Sum_probs=51.8
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHh--------CcCCCCCcCcHHHHHHHHhcCcceeecccC-----CCceeecch
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNP 107 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~ 107 (360)
+..-.++-|+..|.. +|.+.-+|++.+ ++ .+..+.+.|+-|+..|+|.+.... ....|.+|+
T Consensus 38 ~~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~ 112 (145)
T 1xma_A 38 IRGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP 112 (145)
T ss_dssp GGGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred hcCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence 344456666677766 589999998888 57 788999999999999999875321 123699999
Q ss_pred hchhhhc
Q 018145 108 VSKYFVS 114 (360)
Q Consensus 108 ~s~~~~~ 114 (360)
.|+.++.
T Consensus 113 ~G~~~l~ 119 (145)
T 1xma_A 113 EGIKYYK 119 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986643
No 461
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=88.05 E-value=0.6 Score=36.37 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=45.1
Q ss_pred HHHhhChhhHhhhC-CCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeecccC-CCceeecc
Q 018145 43 AAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYALN 106 (360)
Q Consensus 43 ~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~~~~y~~t 106 (360)
+-.+.-|++.|... ++.|+++|.+.+ ++ +..-+.|.|+.|+..|+|.+.... +..+|...
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 44556688888653 489999999999 55 677899999999999999976421 23357653
No 462
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=87.94 E-value=0.59 Score=34.92 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=53.1
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHh------CcCCCCCcCcHHHHHHHHhcCcceeecccC-----CCceeecch
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNP 107 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~ 107 (360)
++++-.+++=|+..|.. +|.+.-+|++.+ ++ ++..+...|+-|+..|+|+..... ....|++|+
T Consensus 8 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~ 82 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR-KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTS 82 (116)
T ss_dssp HHHTTHHHHHHHHHHHH-SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECH
T ss_pred HHHhhhHHHHHHHHHhc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 44444555666777776 599999999998 56 788899999999999999975311 112599999
Q ss_pred hchhhhc
Q 018145 108 VSKYFVS 114 (360)
Q Consensus 108 ~s~~~~~ 114 (360)
.|+..+.
T Consensus 83 ~G~~~l~ 89 (116)
T 3hhh_A 83 SGEAELA 89 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986654
No 463
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=87.50 E-value=0.78 Score=29.00 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=37.9
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
++|+.|+|...|+ +.+..+.-|+.|-+.|-+. +...+|++.|-
T Consensus 18 GMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LR----KRsSRYrlkph 60 (68)
T 3i71_A 18 GMTAGEVAAHFGW----PLEKARNALEQLFSAGTLR----KRSSRYRLKPH 60 (68)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE----EECCEEEECC-
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHhcchhh----hhccccccCcc
Confidence 7999999999999 8888899999999999998 57789987753
No 464
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=87.46 E-value=0.22 Score=40.60 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=47.4
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhC-cCCCCCcCcHHHHHHHHhcCcceeecccC-----CCceeecchhch
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSK 110 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~-~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~~s~ 110 (360)
=.++.|+..|.. |+.|+.+|++.++ + ++..+.+.|+.|...|+|+..... ....|++++.+.
T Consensus 23 P~Rl~il~~L~~-~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 23 PLRWRITQLLIG-RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp HHHHHHHHHTTT-SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 357778888876 6999999999996 8 778899999999999999753211 123577776554
No 465
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=87.40 E-value=0.56 Score=40.50 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=38.0
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP 237 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 237 (360)
+...++..+. .++..|||..||+|..+.+..+. +.+++++|+ +..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 4455665543 45689999999999999887776 568899998 77777654
No 466
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=87.13 E-value=0.44 Score=36.79 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=43.6
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
+-.|.+.|. .|+.|..+||+++|+ ....++-.|..|+..|+|.+.....-..+++
T Consensus 13 k~~ILE~Lk-~G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L 67 (165)
T 2vxz_A 13 LRDILALLA-DGCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRVAFGNVALVCL 67 (165)
T ss_dssp HHHHHHHHT-TCCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEEEETTEEEEES
T ss_pred HHHHHHHHH-hCCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEEEEccEEEEEe
Confidence 345677887 589999999999999 8889999999999999999864322234544
No 467
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=86.89 E-value=0.66 Score=37.57 Aligned_cols=64 Identities=9% Similarity=0.300 Sum_probs=48.9
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHh--------CcCCCCCcCcHHHHHHHHhcCcceeecccC-----CCceeecchhchh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKY 111 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~~s~~ 111 (360)
+++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+-|...|+|+..... ....|++|+.|+.
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 35557777776 699999999998 56 778899999999999999975321 1236999999975
Q ss_pred hh
Q 018145 112 FV 113 (360)
Q Consensus 112 ~~ 113 (360)
.+
T Consensus 78 ~l 79 (179)
T 1yg2_A 78 AL 79 (179)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 468
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=86.81 E-value=2.5 Score=33.07 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=68.1
Q ss_pred HHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecch-hHHHhCCCCCCcEEEecC
Q 018145 170 NETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPSYAGVEHVGGN 248 (360)
Q Consensus 170 ~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d 248 (360)
...|-+.|...... .++.+..+.+. ..-|||+|=|+|..=-.+.+.+|+.+++++|.. ..-..+.. +.=.++.||
T Consensus 16 LDsfirRltaQR~~-L~~a~~~v~~~--~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P-~~e~~ilGd 91 (174)
T 3iht_A 16 LDLFIDRMVSQRAC-LEHAIAQTAGL--SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTP-PEAQLILGD 91 (174)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHTTTC--CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCC-CGGGEEESC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhcCC--CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCC-chHheeccc
Confidence 44555555433322 23445555433 357999999999999999999999999999941 11000100 234577777
Q ss_pred CCCCCCC-----C-cEEEe--ccccccCChhHHHHH----HHHHHHhCCCCcEEEEEeee
Q 018145 249 MFESVPE-----G-DAILM--KWILHCWDDDHCLRI----LKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 249 ~~~~~~~-----~-D~i~~--~~vlh~~~~~~~~~~----L~~i~~~LkpgG~lli~e~~ 296 (360)
+.+..+. + .+.+. -.-.|+ .++-... =.-+..+|.|||.++...+.
T Consensus 92 i~~tL~~~~~r~g~~a~LaHaD~G~g~--~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 92 IRETLPATLERFGATASLVHADLGGHN--REKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp HHHHHHHHHHHHCSCEEEEEECCCCSC--HHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred HHHHHHHHHHhcCCceEEEEeecCCCC--cchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 7653221 1 22222 222222 2222222 23455678899988876655
No 469
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=86.79 E-value=0.54 Score=38.71 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
+|.+..+||+.+|+ .++-++..++.|...|+|+.. . +...+|+.|..++
T Consensus 29 ~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~---~-~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK---Q-RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---C-CCeEECHHHHHHH
Confidence 48999999999999 899999999999999999973 3 7889999998654
No 470
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=86.69 E-value=0.97 Score=41.40 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=27.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-------CCCeEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-------PQIKAVNFDL 229 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~ 229 (360)
.+.+.+|+|+|+|+|.++..+++.. ..++++.++.
T Consensus 78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~ 119 (387)
T 1zkd_A 78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 119 (387)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEec
Confidence 3446789999999999999888753 3457888887
No 471
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=86.67 E-value=0.33 Score=35.38 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=35.5
Q ss_pred ChhhHhhhCCCC-CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEIIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L~~~g~~-t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|+..|..++.+ |..+||+.+|+ ...-+++-|+.|...|+|...
T Consensus 32 ~I~~~l~~g~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhhcCCCcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 334445443345 99999999999 888999999999999999974
No 472
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=86.38 E-value=0.52 Score=42.18 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=45.2
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
+..|++.|...++.|.++||+.+|+ .+..++|-|+.|...|++... ..+..|++.+
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~--~~g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFT--VPGKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEE--ETTTEEECSS
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEE--ecCCCcEEee
Confidence 3456777776568999999999999 999999999999999998653 2444787754
No 473
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=86.34 E-value=0.14 Score=46.50 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=0.0
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcC
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~ 115 (360)
.+..++..|...++.|..+||+.+|+ ++.-++|.|+.|...|+|.+ ......+|+.|+.+...
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~----~~~gi~LT~~G~~~~~~ 83 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEP----SKSGMTLTERGLEVYQG 83 (345)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE----EecceEEcHHHHHHHHH
Confidence 45667777877679999999999999 89999999999999999984 22447788888766643
No 474
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=86.17 E-value=3.1 Score=36.18 Aligned_cols=88 Identities=13% Similarity=0.062 Sum_probs=51.9
Q ss_pred ceEEEEcCCcc--hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHH
Q 018145 199 ERLVDVGGGFG--VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLR 275 (360)
Q Consensus 199 ~~vLDiG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~ 275 (360)
.+|.=||+|.= .++..+.+..+..+++++|. ++..+.+.+.........|..+.....|+|+++ .+++....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence 57888998852 44455666555667888887 554444322211111222322223334999885 45566678
Q ss_pred HHHHHHHh-CCCCcEEE
Q 018145 276 ILKNCYKA-VPGNGKVI 291 (360)
Q Consensus 276 ~L~~i~~~-LkpgG~ll 291 (360)
+++.+... ++|+..++
T Consensus 82 v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHTSCCCTTCEEE
T ss_pred HHHHHHhcCCCCCCEEE
Confidence 88888888 88876544
No 475
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=86.14 E-value=0.35 Score=37.27 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=32.1
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
..|.++||+++|+ ++.-+.+.|+-|...|+|...
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5799999999999 999999999999999999984
No 476
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=86.11 E-value=0.43 Score=43.76 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 36 ~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
...++++...+..|++.|. .|+.|..|||+.+|+ .+.-+.++++.|...|+|.+.+
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-KSPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp ----------CCCSHHHHH-HSCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred cCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec
Confidence 4566777778888999999 789999999999999 8889999999999999998753
No 477
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=85.88 E-value=0.56 Score=38.27 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=46.4
Q ss_pred HHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcc-eeecccCCCceeecchh
Q 018145 42 QAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNPV 108 (360)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~-l~~~~~~~~~~y~~t~~ 108 (360)
..-....|.+.|.+. ++.|..+||+++|+ ..+-+++-++.|...|+ +.. ..+.|.+.+.
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~----~~~Gy~l~~~ 79 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA----TPRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE----ETTEEECCTT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----ECCEEEECCc
Confidence 345567788888753 47999999999999 89999999999999999 764 2355766543
No 478
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=85.24 E-value=0.64 Score=40.05 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=64.2
Q ss_pred CcceEEEEcCCcchHHHHHHhh-------CCCCeEEEecc----hhH------------------------HH-------
Q 018145 197 NVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL----PHV------------------------VQ------- 234 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~------- 234 (360)
-+..|+|+|+-.|..+..++.. .++-+++++|. |+. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3579999999999888776542 46778888883 321 00
Q ss_pred hCCC----CCCcEEEecCCCCCC-------CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 235 DAPS----YAGVEHVGGNMFESV-------PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 235 ~a~~----~~~v~~~~~d~~~~~-------~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
..+. .++|+++.|++.+.. |.. |++.+=.=.+ +.....+..+...|+|||.+++-+.
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 0011 167999999987632 322 7777644221 2445789999999999999988664
No 479
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=84.98 E-value=4.5 Score=35.21 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=49.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCC----CeEEEecchhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDH 272 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~ 272 (360)
++..|+=||||.|.....|.+.+|+ ++.+.+|...-+...+..+ ++.+....+ ++.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~----------------NV~li~~fv----de~ 119 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLR----------------DVTLVTRFV----DEE 119 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCT----------------TEEEEECCC----CHH
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCC----------------cEEEEeccC----CHH
Confidence 4579999999999999999988775 5788888311111111112 444443332 222
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
-+++.++.+.....|+|.|.-..
T Consensus 120 ---dl~~l~~~~~~~~iLLISDIRS~ 142 (307)
T 3mag_A 120 ---YLRSIKKQLHPSKIILISDVRSK 142 (307)
T ss_dssp ---HHHHHHHHHTTSCEEEEECCCC-
T ss_pred ---HHHHHHHhccCCCEEEEEEecCC
Confidence 25666777778889999887554
No 480
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=84.50 E-value=0.94 Score=34.98 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=46.5
Q ss_pred HHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCC-CcCcHHHHHHHHhcCcceeeccc-CCCceeecc
Q 018145 42 QAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVK-APMMLDRMLRLLVSHRVLECSVS-GGERLYALN 106 (360)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~-~~~~~~~~L~~L~~~g~l~~~~~-~~~~~y~~t 106 (360)
.+..+.-|++.|... ++.|+++|.+.+.-+.|. +..-+.|.|+.|+..|+|.+... ++..+|...
T Consensus 12 ~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 12 ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 355677788888764 489999999998421111 66679999999999999988642 223467654
No 481
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=84.44 E-value=0.67 Score=39.79 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
-+..++..|.+. ++.|..+||+.+++ ++.-+-++++-|+..|+|.+.....+. ...+|+.|..++.
T Consensus 35 ~q~~vL~~L~~~~~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~ 105 (250)
T 1p4x_A 35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIA 105 (250)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHH
Confidence 345566777653 47899999999999 889999999999999999987543333 4678888876543
No 482
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=84.29 E-value=2.4 Score=32.35 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=51.0
Q ss_pred ceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC--C-----CCCcEEEeccccccCC
Q 018145 199 ERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES--V-----PEGDAILMKWILHCWD 269 (360)
Q Consensus 199 ~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~--~-----~~~D~i~~~~vlh~~~ 269 (360)
.+|+=+|||. |......+.. .+..++++|. ++.++.+++ .++.++.+|..++ + ...|++++.- +
T Consensus 8 ~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-----~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTI-----P 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECC-----S
T ss_pred CCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEEC-----C
Confidence 5788888864 3333333333 2467888887 666665543 5688999998762 1 1238887642 2
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEE
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli 292 (360)
++.....+-...+.+.|+.+++.
T Consensus 81 ~~~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 81 NGYEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEE
T ss_pred ChHHHHHHHHHHHHHCCCCeEEE
Confidence 22222223334566778877665
No 483
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=83.89 E-value=0.87 Score=34.98 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=44.7
Q ss_pred HHHhhChhhHhhhC--CCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeeccc-CCCceeecc
Q 018145 43 AAIQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALN 106 (360)
Q Consensus 43 ~a~~lglfd~L~~~--g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-~~~~~y~~t 106 (360)
+-.+.-|++.|... ++.|+++|.+.+ ++ +..-+.|.|+.|+..|+|.+... .+..+|..+
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 84 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA 84 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 34456678888653 489999999998 55 67779999999999999997632 122467653
No 484
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=83.69 E-value=1 Score=32.64 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=33.6
Q ss_pred HHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHh
Q 018145 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (360)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~ 87 (360)
.+.++||+..|.. |..|-.|||+.+|+ ....+.|+-++|-
T Consensus 44 l~~R~~l~~~L~~-ge~TQREIA~~lGi----S~stISRi~r~L~ 83 (101)
T 1jhg_A 44 LGTRVRIIEELLR-GEMSQRELKNELGA----GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHH-CCSCHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHHCC----ChhhhhHHHHHHH
Confidence 4557999999988 57999999999999 8888888766664
No 485
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=83.47 E-value=1.1 Score=35.06 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=46.0
Q ss_pred HHHHhhChhhHhhhC-CCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeecccC-CCceeec
Q 018145 42 QAAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYAL 105 (360)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~~~~y~~ 105 (360)
.+-.+.-|++.|... ++.|+++|.+.+ ++ +..-+.|.|+.|+..|+|.+.... +..+|..
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 356677788888764 489999999998 56 777899999999999999976421 2235665
No 486
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=83.28 E-value=2.7 Score=37.86 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=58.3
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecC------CCCC----CCCC-cEEEe
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN------MFES----VPEG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d------~~~~----~~~~-D~i~~ 261 (360)
.+++.+||-+|+|. |.++..+++.....+++++|. ++-.+.+++..--..+..+ ..+. .+.+ |+|+-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 56778999999875 888888998875437888875 5545555433211222211 1100 1133 88875
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.-- . ...++...+.|+|||+++++-.
T Consensus 249 ~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 249 CTG-----A---EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CSC-----C---HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCC-----C---hHHHHHHHHHhcCCCEEEEEec
Confidence 432 1 2357788899999999998754
No 487
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=83.25 E-value=1.5 Score=43.33 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=55.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhC-------CC-----CeEEEecc----hhHHHhCCC-------------------C--
Q 018145 197 NVERLVDVGGGFGVTLSMITSKY-------PQ-----IKAVNFDL----PHVVQDAPS-------------------Y-- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~~~~a~~-------------------~-- 239 (360)
+.-+|+|+|-|+|.......+.+ |+ ++++.++. ++.+..+-. .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 45799999999998777665542 22 56777764 233331111 0
Q ss_pred ----------CCcEEEecCCCCC---CC----C-CcEEEeccccccC-ChhHHHHHHHHHHHhCCCCcEEE
Q 018145 240 ----------AGVEHVGGNMFES---VP----E-GDAILMKWILHCW-DDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 240 ----------~~v~~~~~d~~~~---~~----~-~D~i~~~~vlh~~-~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
-.+++..+|+.+. ++ . .|++++-..-..- |+-.-..+++.+++.++|||.+.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 1244666777551 21 1 2888873322111 11123568999999999998766
No 488
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=83.17 E-value=0.72 Score=29.20 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=37.7
Q ss_pred hChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 47 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
-.|++.+..+ |-+.++.+|+++|+ +..-+-.+|+-|++.|++..
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 3467777775 47899999999999 88899999999999999974
No 489
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=83.14 E-value=2.4 Score=38.47 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=58.8
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEec---CCCCC----CCCC-cEEEeccc
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG---NMFES----VPEG-DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~---d~~~~----~~~~-D~i~~~~v 264 (360)
.+++.+||-+|+|. |.++..+++.....+++++|. ++-.+.+++..--.++.. |+.+. .+.+ |+|+-.--
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCC
Confidence 56778999999886 888888888764436777775 555555543221122221 11110 1124 88875432
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
. ...++.+.+.|+|||+++++-..
T Consensus 268 -----~---~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 268 -----S---PEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp -----C---HHHHHHHHHTEEEEEEEEECCCC
T ss_pred -----C---HHHHHHHHHHHhcCCEEEEeCCC
Confidence 1 24688889999999999987543
No 490
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=83.07 E-value=1.7 Score=32.73 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeecccC----CCceeecc
Q 018145 36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSG----GERLYALN 106 (360)
Q Consensus 36 ~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~----~~~~y~~t 106 (360)
+..++++-.+++=|+..|. +|.+--+|.+.+ ++ ++.-+...|+-|...|+|+..... ....|++|
T Consensus 13 ~~~~l~~g~l~~~IL~lL~--~p~~GYei~~~l~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT 86 (123)
T 3ri2_A 13 MVLELRRGTLVMLVLSQLR--EPAYGYALVKSLADHGIPI----EANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTT 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEEC
T ss_pred HHHHHHhCcHHHHHHHHHc--CCCCHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEEC
Confidence 4555666666777777777 488888888885 66 788899999999999999975211 12269999
Q ss_pred hhchhhhc
Q 018145 107 PVSKYFVS 114 (360)
Q Consensus 107 ~~s~~~~~ 114 (360)
+.|+..+.
T Consensus 87 ~~Gr~~l~ 94 (123)
T 3ri2_A 87 DEGLRVLR 94 (123)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99986654
No 491
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=83.06 E-value=0.75 Score=34.58 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=41.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
....|.+.+.+ .|.++.+||+.+|+ ++..++.+|+.|...|.+..- ..+.|-++
T Consensus 8 l~~~i~~~~~~-~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i---~~~~~~~~ 61 (121)
T 2pjp_A 8 IWQKAEPLFGD-EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI---VKDRYYRN 61 (121)
T ss_dssp HHHHHGGGCSS-SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE---ETTEEEEH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---cCCceECH
Confidence 33445556644 37799999999999 899999999999999999873 45655444
No 492
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=82.51 E-value=1.5 Score=36.70 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 56 ~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
.|++|+.+||+.+|+ ........|+.++..|++-++.
T Consensus 166 ~g~vt~~~la~~l~w----s~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 166 KGSLTSEEFAKLVGM----SVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCEEEEC
Confidence 369999999999999 8889999999999999999863
No 493
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=82.48 E-value=1.8 Score=40.07 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=32.5
Q ss_pred CCcceEEEEcCCcchHHHHHH-hhCCC-CeEEEecc-hhHHHh
Q 018145 196 QNVERLVDVGGGFGVTLSMIT-SKYPQ-IKAVNFDL-PHVVQD 235 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~ 235 (360)
+++..|+|||++.|.++..++ +..++ .+++.++. |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 567899999999999999988 56765 78999987 655443
No 494
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=82.28 E-value=5 Score=35.78 Aligned_cols=122 Identities=10% Similarity=0.038 Sum_probs=70.0
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCe-EEEecc-hhHHHhCCCC-CCcEEEecCCCC-C---CCCCcEEEeccccccCCh
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-S---VPEGDAILMKWILHCWDD 270 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~---~~~~D~i~~~~vlh~~~~ 270 (360)
..+++|+-||.|.++..+.+.. .+ +..+|. +.+++..+.+ +... .+|+.+ . ++..|+++...-...++.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 4789999999999999998874 33 455666 5555433321 2222 567765 1 334488887644444431
Q ss_pred ---------h--HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 271 ---------D--HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 271 ---------~--~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
+ ....-+-++.+.++| ++++.|.+..- .. .....+.+.+.+.|++.
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P--~~~~~ENV~gl-------------~~--------~~~~~~~~~i~~~l~~~ 143 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKP--KVVFMENVKNF-------------AS--------HDNGNTLEVVKNTMNEL 143 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCC--SEEEEEEEGGG-------------GT--------GGGGHHHHHHHHHHHHT
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccC--cEEEEeCcHHH-------------Hh--------ccccHHHHHHHHHHHhC
Confidence 1 111123334455677 46777876531 00 01112456788888999
Q ss_pred CCceeeE
Q 018145 340 GFKGINF 346 (360)
Q Consensus 340 Gf~~~~~ 346 (360)
||.+...
T Consensus 144 GY~v~~~ 150 (327)
T 2c7p_A 144 DYSFHAK 150 (327)
T ss_dssp TBCCEEE
T ss_pred CCEEEEE
Confidence 9886443
No 495
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=82.25 E-value=5.5 Score=34.31 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=49.8
Q ss_pred eEEEEcCCc-c-hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCC-CCcEEEeccccccCChhHHHH
Q 018145 200 RLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP-EGDAILMKWILHCWDDDHCLR 275 (360)
Q Consensus 200 ~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~-~~D~i~~~~vlh~~~~~~~~~ 275 (360)
+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-......|..+... ..|+|+++ .+++....
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 77 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHHH
Confidence 677888774 2 33333444322236888887 5555544322211111223222233 45999885 45666778
Q ss_pred HHHHHHHhCCCCcEEEE
Q 018145 276 ILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 276 ~L~~i~~~LkpgG~lli 292 (360)
+++.+...++|+..++.
T Consensus 78 v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTD 94 (281)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred HHHHHHhhCCCCcEEEE
Confidence 88999899999875543
No 496
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=82.14 E-value=0.84 Score=33.99 Aligned_cols=65 Identities=12% Similarity=0.226 Sum_probs=48.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhC------cCCCCCcCcHHHHHHHHhcCcceeecccC-C----Cceeecchhchhhh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVSG-G----ERLYALNPVSKYFV 113 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~------~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~----~~~y~~t~~s~~~~ 113 (360)
+++=|+..|.. +|.+.-+|++.+. + ++..+...|+-|+..|+|+..... + ...|++|+.|+..+
T Consensus 10 l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 10 LEGCILYIISQ-EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHHHHHHH-SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 34445666766 5899999999885 6 788899999999999999975321 1 12599999998655
Q ss_pred c
Q 018145 114 S 114 (360)
Q Consensus 114 ~ 114 (360)
.
T Consensus 85 ~ 85 (115)
T 4esb_A 85 E 85 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 497
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=82.01 E-value=0.27 Score=46.58 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HhhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCc-ceeecccCCCceeecchhchhhhcCCCCC
Q 018145 45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHR-VLECSVSGGERLYALNPVSKYFVSNKDGA 119 (360)
Q Consensus 45 ~~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g-~l~~~~~~~~~~y~~t~~s~~~~~~~~~~ 119 (360)
++..|+..|...+ +.+.++||+.+|+ ++..+-+.+..|.+.| ++.... .....|.+|+.|+.++...++.
T Consensus 6 ~~~~iL~~l~~~~~~~~~~~~a~~~~~----~~~~v~~~~~~L~~~~~~v~~~~-~~~~~~~Lt~eg~~~~~~G~pE 77 (508)
T 3l4g_A 6 VAELLLRRLEASDGGLDSAELAAELGM----EHQAVVGAVKSLQALGEVIEAEL-RSTKHWELTAEGEEIAREGSHE 77 (508)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHcCC----CHHHHHHHHHHHHhCCCeEEEEE-EEEEEEEECHHHHHHHHcCCHH
Confidence 4556677777655 7789999999999 8888999999999998 887654 4667899999999998887764
No 498
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=81.78 E-value=1.4 Score=28.42 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=27.7
Q ss_pred hhHhhhCCCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcce
Q 018145 50 FEIIAKAGELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVL 92 (360)
Q Consensus 50 fd~L~~~g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l 92 (360)
...+...++.|+++|++.+ ++ ...-+.|.|+ ..|++
T Consensus 11 ~~ll~~~~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 11 REIITSNEIETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE
Confidence 3445555699999999999 88 7777888887 55777
No 499
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=81.69 E-value=1.2 Score=41.52 Aligned_cols=51 Identities=16% Similarity=0.331 Sum_probs=44.0
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++..-+..|++.|...+++|..|||+.+|+ .+.-+.++++.|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 444455567888888789999999999999 888999999999999999975
No 500
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=81.62 E-value=3.9 Score=37.47 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=62.2
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEec---CC-CCC----CCC-C-cEEEec
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG---NM-FES----VPE-G-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~---d~-~~~----~~~-~-D~i~~~ 262 (360)
.+++.+||.+|+|. |.++..+++.....+++++|. ++-.+.+++.. .+.+.. |+ .+. .+. + |+|+-.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~ 261 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQILGKPEVDCGVDA 261 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 66788999999886 888889998864337888886 66666665542 233322 11 110 112 4 888764
Q ss_pred cccccCC--h----hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 263 WILHCWD--D----DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 263 ~vlh~~~--~----~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
---.... + ......++.+.+.|+|||+++++-..
T Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 262 VGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp SCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred CCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 3321100 0 00123688889999999999876543
Done!