BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018146
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X53|A Chain A, The Solution Structure Of The C-Terminal Domain Of Human
Activator Of 90 Kda Heat Shock Protein Atpase Homolog 1
Length = 145
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 226 ISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISKEVNGEISIFDGSVTGKNLELQEGK 285
I+L E F ++LY + + + FT + A + + G+ + DG+V+G+ +L K
Sbjct: 13 ITLKETFLTSPEELYRVFTTQELVQAFTHAPATLEADRGGKFHMVDGNVSGEFTDLVPEK 72
Query: 286 LIVQKWRFGSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWR 345
IV KWRF SWP+G +T+ L F + + G T + + +P + E T +GW+
Sbjct: 73 HIVMKWRFKSWPEGHFATITLTFID-KNGETELCMEGRGIPAPEE-------ERTRQGWQ 124
Query: 346 DLIFQRIRAVFGFG 359
F+ I+ FG+G
Sbjct: 125 RYYFEGIKQTFGYG 138
>pdb|3NI8|A Chain A, Crystal Structure Of Pfc0360w, An Hsp90 Activator From
Plasmodium Falciparum
Length = 158
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%)
Query: 255 SNARISKEVNGEISIFDGSVTGKNLELQEGKLIVQKWRFGSWPDGIESTVRLVFDEPEPG 314
S A + +V G+ S+F GS+ G+ E+ + IV+KW+F W + STV + F +
Sbjct: 51 SLAEVDLKVGGKFSLFSGSILGEFTEITKPHKIVEKWKFRDWNECDYSTVTVEFISVKEN 110
Query: 315 VTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFGF 358
T +KLTHN++P ++Y V+E + GW I + G+
Sbjct: 111 HTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILGY 154
>pdb|1USV|B Chain B, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|D Chain D, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|F Chain F, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|H Chain H, The Structure Of The Complex Between Aha1 And Hsp90
Length = 170
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 21 NVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKII 80
N +NWHW + +C+ W++ L + + + K K + +EG+ VN RKGK+I
Sbjct: 19 NPNNWHWVDKNCIGWAKEYFKQKLVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVI 78
Query: 81 PGYELNVTVSWEGEAKDGDGGSLLKVDGLVEIPYISDENADENPEIRVSVKDE 133
++L +TV EG D GS L +G + +P ++ ++ + + +S+ E
Sbjct: 79 SLFDLKITVLIEGHV-DSKDGSALPFEGSINVPEVAFDSEASSYQFDISIFKE 130
>pdb|1USU|B Chain B, The Structure Of The Complex Between Aha1 And Hsp90
Length = 170
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 21 NVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKII 80
N +NWHW + +C+ W++ + + + + K K + +EG+ VN RKGK+I
Sbjct: 19 NPNNWHWVDKNCIGWAKEYFKQKIVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVI 78
Query: 81 PGYELNVTVSWEGEAKDGDGGSLLKVDGLVEIPYISDENADENPEIRVSVKDE 133
++L +TV EG D GS L +G + +P ++ ++ + + +S+ E
Sbjct: 79 SLFDLKITVLIEGHV-DSKDGSALPFEGSINVPEVAFDSEASSYQFDISIFKE 130
>pdb|2NYA|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
pdb|2NYA|F Chain F, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
Length = 792
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 41 NGLL----SDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWEGEAK 96
NG++ SDL IL+ N ++ I + +VN+RKG GY L T E AK
Sbjct: 219 NGIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAK 278
Query: 97 D 97
+
Sbjct: 279 N 279
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 232 FSCRAKDLYEILMDENRWKGFTQSNARISKEVNGEISIFD----GSVTGKNLELQEGKLI 287
F+ RA++L+ L E K FTQ+ + G + + ++ EL EGK +
Sbjct: 64 FALRAQELWYELEKETHHKIFTQTGVLVYGPKGGSAFVSETMEAANIHSLEHELFEGKQL 123
Query: 288 VQKWRFGSWPDGIESTVRLVFDEPEPGV 315
+W PD E+ EP GV
Sbjct: 124 TDRWAGVEVPDNYEAIF-----EPNSGV 146
>pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|B Chain B, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 337
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 32 CLEWSRN--LLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVN 73
L W+R+ L GL DL ++D E V+ K I+ E E Y
Sbjct: 139 MLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,011,253
Number of Sequences: 62578
Number of extensions: 476481
Number of successful extensions: 1077
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 9
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)