Query 018146
Match_columns 360
No_of_seqs 284 out of 1102
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2936 Uncharacterized conser 100.0 8.8E-81 1.9E-85 583.3 28.3 301 15-360 1-301 (301)
2 COG5580 Activator of HSP90 ATP 100.0 4.2E-64 9.1E-69 449.6 13.5 268 19-360 3-270 (272)
3 PF09229 Aha1_N: Activator of 100.0 5.5E-38 1.2E-42 270.7 11.8 136 29-169 1-137 (137)
4 cd08892 SRPBCC_Aha1 Putative h 100.0 3.8E-29 8.3E-34 211.9 17.4 126 225-358 1-126 (126)
5 PTZ00220 Activator of HSP-90 A 100.0 1.8E-29 3.9E-34 216.1 15.4 129 232-360 1-130 (132)
6 cd07826 SRPBCC_CalC_Aha1-like_ 99.9 4.3E-22 9.4E-27 171.9 15.8 128 225-357 1-141 (142)
7 cd08895 SRPBCC_CalC_Aha1-like_ 99.9 3.8E-21 8.2E-26 166.4 17.0 125 225-357 1-145 (146)
8 cd08900 SRPBCC_CalC_Aha1-like_ 99.9 6E-21 1.3E-25 164.5 16.1 127 225-357 1-142 (143)
9 cd08901 SRPBCC_CalC_Aha1-like_ 99.9 6.8E-21 1.5E-25 163.2 14.5 128 226-359 2-133 (136)
10 cd08897 SRPBCC_CalC_Aha1-like_ 99.8 2E-20 4.3E-25 159.5 14.8 116 226-357 2-132 (133)
11 cd08896 SRPBCC_CalC_Aha1-like_ 99.8 1.1E-19 2.5E-24 157.2 16.8 129 225-357 1-145 (146)
12 cd08894 SRPBCC_CalC_Aha1-like_ 99.8 7.1E-20 1.5E-24 157.2 15.2 125 225-357 1-138 (139)
13 PF08327 AHSA1: Activator of H 99.8 3.7E-20 8E-25 154.1 12.6 116 233-356 1-123 (124)
14 cd08891 SRPBCC_CalC Ligand-bin 99.8 8.9E-20 1.9E-24 158.4 14.4 129 226-357 2-148 (149)
15 cd08893 SRPBCC_CalC_Aha1-like_ 99.8 1.7E-19 3.7E-24 152.2 15.2 125 226-357 2-135 (136)
16 cd08898 SRPBCC_CalC_Aha1-like_ 99.7 5.2E-17 1.1E-21 138.7 14.8 131 225-357 2-144 (145)
17 COG3832 Uncharacterized conser 99.7 6.6E-17 1.4E-21 141.2 14.8 130 221-357 5-148 (149)
18 cd08899 SRPBCC_CalC_Aha1-like_ 99.7 6.8E-17 1.5E-21 141.8 14.4 123 222-357 9-136 (157)
19 cd07814 SRPBCC_CalC_Aha1-like 99.6 7.8E-15 1.7E-19 123.8 14.8 129 225-357 1-138 (139)
20 cd07825 SRPBCC_7 Ligand-bindin 99.4 6.2E-12 1.4E-16 107.4 14.8 127 226-356 2-143 (144)
21 cd07821 PYR_PYL_RCAR_like Pyra 99.2 1.7E-09 3.6E-14 90.7 15.6 129 225-356 2-139 (140)
22 cd07822 SRPBCC_4 Ligand-bindin 99.1 1.7E-09 3.7E-14 90.8 14.0 127 226-356 2-140 (141)
23 cd08862 SRPBCC_Smu440-like Lig 99.0 2.5E-08 5.4E-13 83.9 15.5 128 225-357 2-137 (138)
24 cd07818 SRPBCC_1 Ligand-bindin 98.9 4.7E-08 1E-12 84.0 15.6 130 225-357 3-149 (150)
25 cd05018 CoxG Carbon monoxide d 98.8 2.4E-07 5.2E-12 78.3 15.7 130 225-356 2-143 (144)
26 cd08865 SRPBCC_10 Ligand-bindi 98.6 1.7E-06 3.7E-11 72.2 14.7 125 227-357 2-139 (140)
27 cd07817 SRPBCC_8 Ligand-bindin 98.6 1.6E-06 3.4E-11 72.9 14.2 127 225-356 1-137 (139)
28 cd07824 SRPBCC_6 Ligand-bindin 98.6 7.7E-07 1.7E-11 76.7 11.4 95 226-326 3-111 (146)
29 cd07823 SRPBCC_5 Ligand-bindin 98.5 3.2E-06 7E-11 72.8 14.9 129 226-356 1-144 (146)
30 cd07812 SRPBCC START/RHO_alpha 98.5 3.1E-06 6.7E-11 68.8 13.4 101 227-329 2-113 (141)
31 PF10604 Polyketide_cyc2: Poly 98.5 9.6E-06 2.1E-10 67.8 16.3 128 224-356 2-138 (139)
32 cd07819 SRPBCC_2 Ligand-bindin 98.0 0.00025 5.5E-09 59.4 14.8 99 225-326 3-112 (140)
33 cd08861 OtcD1_ARO-CYC_like N-t 97.8 0.00089 1.9E-08 56.6 14.7 128 227-356 2-140 (142)
34 cd07820 SRPBCC_3 Ligand-bindin 97.8 0.0006 1.3E-08 57.9 12.7 95 227-325 2-110 (137)
35 PF06240 COXG: Carbon monoxide 97.5 0.0042 9E-08 53.4 14.7 127 229-357 2-140 (140)
36 cd08860 TcmN_ARO-CYC_like N-te 97.1 0.022 4.8E-07 49.4 14.6 127 226-357 3-143 (146)
37 cd07813 COQ10p_like Coenzyme Q 97.1 0.0094 2E-07 50.3 11.9 98 227-328 2-109 (138)
38 COG3427 Carbon monoxide dehydr 97.1 0.023 4.9E-07 49.6 14.1 126 228-358 5-145 (146)
39 cd08866 SRPBCC_11 Ligand-bindi 97.0 0.044 9.5E-07 46.2 15.5 99 227-328 2-116 (144)
40 cd07816 Bet_v1-like Ligand-bin 96.8 0.081 1.8E-06 45.8 15.4 102 225-328 2-121 (148)
41 COG5637 Predicted integral mem 96.3 0.041 8.9E-07 49.3 10.1 103 222-328 68-178 (217)
42 PRK10724 hypothetical protein; 96.0 0.1 2.2E-06 46.1 11.4 98 222-323 13-120 (158)
43 PF03364 Polyketide_cyc: Polyk 94.1 1.6 3.4E-05 36.0 12.5 87 232-323 1-100 (130)
44 PF11687 DUF3284: Domain of un 93.1 3.5 7.5E-05 34.6 12.9 97 227-328 2-104 (120)
45 PF00407 Bet_v_1: Pathogenesis 87.9 17 0.00038 31.6 15.7 106 223-328 3-124 (151)
46 cd08913 START_STARD14-like Lip 77.9 20 0.00044 33.8 9.8 33 222-254 79-111 (240)
47 cd08876 START_1 Uncharacterize 73.7 64 0.0014 28.5 14.4 105 224-328 41-168 (195)
48 PF10698 DUF2505: Protein of u 73.2 2.9 6.3E-05 36.6 2.6 26 226-251 1-26 (159)
49 PF08982 DUF1857: Domain of un 68.5 81 0.0018 27.5 13.7 113 234-353 18-139 (149)
50 cd08914 START_STARD15-like Lip 66.1 77 0.0017 29.9 10.7 32 223-254 77-108 (236)
51 COG4276 Uncharacterized conser 63.1 1E+02 0.0022 26.8 12.8 113 225-346 3-131 (153)
52 cd08906 START_STARD3-like Chol 60.3 55 0.0012 30.0 8.5 31 224-254 49-80 (209)
53 cd08873 START_STARD14_15-like 56.2 93 0.002 29.3 9.4 129 222-355 75-228 (235)
54 PF09650 PHA_gran_rgn: Putativ 49.2 25 0.00053 27.9 3.7 18 106-130 47-64 (87)
55 PF11485 DUF3211: Protein of u 47.3 1.9E+02 0.0041 25.0 11.7 94 227-326 4-104 (136)
56 TIGR02610 PHA_gran_rgn putativ 46.2 34 0.00075 27.4 4.1 41 106-164 50-90 (91)
57 cd08905 START_STARD1-like Chol 40.1 79 0.0017 28.9 6.1 131 224-356 49-206 (209)
58 COG2867 Oligoketide cyclase/li 35.7 96 0.0021 27.1 5.5 96 224-323 2-108 (146)
59 PF02886 LBP_BPI_CETP_C: LBP / 34.8 1.6E+02 0.0035 27.0 7.4 79 66-157 120-205 (238)
60 cd08868 START_STARD1_3_like Ch 34.4 3.3E+02 0.0071 24.5 9.3 32 224-255 48-80 (208)
61 PF03789 ELK: ELK domain ; In 31.8 51 0.0011 19.5 2.2 21 148-168 2-22 (22)
62 PF15174 PRNT: Prion-related p 29.3 15 0.00033 25.6 -0.4 17 65-81 34-50 (51)
63 PF06240 COXG: Carbon monoxide 27.9 3.6E+02 0.0078 22.5 8.9 27 139-165 111-137 (140)
64 cd08874 START_STARD9-like C-te 23.7 5.7E+02 0.012 23.4 10.6 33 222-254 43-75 (205)
65 cd01232 PH_TRIO Trio pleckstri 20.5 4.2E+02 0.009 22.0 6.6 67 66-133 14-84 (114)
66 cd08904 START_STARD6-like Lipi 20.2 6.7E+02 0.014 22.9 8.5 31 224-254 46-76 (204)
No 1
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.8e-81 Score=583.27 Aligned_cols=301 Identities=40% Similarity=0.710 Sum_probs=282.1
Q ss_pred cCCCccCCCCceeeccCCChhHHHHHHhhhccceeecCCCceEEEEEEeeeEEeEEEEEeecCeeeeEEEEEEEEEEEEE
Q 018146 15 DRPDGANVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWEGE 94 (360)
Q Consensus 15 ~r~d~~N~NnWHW~EKn~~~Wak~~l~elL~~~~~~~~~~~~~~~i~~v~~v~Gda~v~~RKGK~i~~yd~~i~l~w~g~ 94 (360)
||+|+.|||||||+||||++||++||.++|.++.+..++ ..|+|++|++|+|||.|||||||+|++|||.|++.|.|.
T Consensus 1 er~~~~n~nNwHW~ekn~~~WS~e~f~q~ls~~~~~s~~--~~~~i~~vs~~~ge~~vn~RKgK~I~~f~l~i~~~~~G~ 78 (301)
T KOG2936|consen 1 ERADVTNPNNWHWVEKNCSPWSKEYLNQKLSGVSSLSGP--FSCKITEVSSIDGEARVNQRKGKLISLFDLSIELNFEGG 78 (301)
T ss_pred CCcccCCCccceeccccchhhhhHHHHhhhcccccccCc--ceEEEeeeEeccccccccccccceEEEEEeEEEEEEecc
Confidence 699999999999999999999999999999999887766 689999999999999999999999999999999999995
Q ss_pred eeCCCCCceeeeeEEEEcccccCCCCCCCcEEEEEEccCCcchhhHHHHHHhcChhHHHHHHHHHHHHHHhcCCCCCccc
Q 018146 95 AKDGDGGSLLKVDGLVEIPYISDENADENPEIRVSVKDEGPLGKRLKDAMWVKGKPVIEEKVKVYVEAMARGGPCKDELE 174 (360)
Q Consensus 95 ~~~~~~~~~~~~~G~i~ipe~s~e~~~dd~~~~v~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~f~~~L~~~~~~~~~l~ 174 (360)
.++++. .++|+|+|||||+||+.+||+|.|++.++++++..++++||++|.|+||+.+..|+++|+.+|+.++|||
T Consensus 79 -~~~s~v---~~~G~ieiP~lS~en~~~d~e~~vsi~~~~~~~~~l~~l~k~eg~~~i~e~~~~y~~~L~~~~~~~~~l~ 154 (301)
T KOG2936|consen 79 -EDGSGV---KYKGKIEIPNLSDENEVSDDEFDVSIFKKGPEGYTLKELVKKEGIPKIREVMGKYIRELKREHSKDIILP 154 (301)
T ss_pred -ccCCcc---ccCceecccccchhccCcCceEeeeeccCCcchhHHHHHHHHhhHHHHHHHHHHHHHHHhcccCCCcccc
Confidence 234554 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCCCCCCCCCCCCCCccccccccccccccccceecccccccceeeEEEEEEEcCCHHHHHHHhcChhhHhcccC
Q 018146 175 SKNVSSKSKNDNISSSSSSSTSYVSQTVKNDVVAEKKEVKKEVKKKEGFKNISLSEKFSCRAKDLYEILMDENRWKGFTQ 254 (360)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~ 254 (360)
++++++.. . .+...++++.+|.++.+|+|++++||++||||++|++|++
T Consensus 155 t~~v~~v~---~----------------------------~~~~~~~~t~di~l~~tfn~~~~eLy~~fld~~rv~~wt~ 203 (301)
T KOG2936|consen 155 TDEVKPVK---Q----------------------------GPVGVVIPTADISLSATFNCRVDELYEIFLDPERVKAWTR 203 (301)
T ss_pred hhccCccc---c----------------------------CccccccccccceehhhcCCCHHHHHHHHhcHHHHHHhcC
Confidence 98765100 0 0123368899999999999999999999999999999999
Q ss_pred CCcceeeecCeEEEEEcCeEEEEEEEEecCCEEEEEEEeCCCCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCc
Q 018146 255 SNARISKEVNGEISIFDGSVTGKNLELQEGKLIVQKWRFGSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNA 334 (360)
Q Consensus 255 ~~~~~d~~~GG~f~lf~G~v~G~~~el~p~~rIv~tWr~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~ 334 (360)
+++.++.++||+|+||+|||+|+|++++|+++|||+|||++||++|+++++|+|.+.+ +.|.|++.|+|||.++
T Consensus 204 S~a~l~~~~~g~f~lf~GnVtg~~~~~e~~K~Iv~kWrl~~Wp~~~~atI~~~f~~~~-~~t~l~~~~kgVP~~e----- 277 (301)
T KOG2936|consen 204 SPAELEADPGGKFSLFDGNVTGEFLELEKNKKIVMKWRLKSWPDGHDATITLTFYESQ-GETKLQVKQKGVPIGE----- 277 (301)
T ss_pred ChhhcccCCCCceEEecccceeeeeeecCCCeEEEEEecccCCCCccceEEEEEecCC-CceEEEEEecCCCcch-----
Confidence 9999999999999999999999999999999999999999999999999999999976 9999999999999999
Q ss_pred hhhHHHHhhhHHHHHHHHHHhhccCC
Q 018146 335 TVVENTERGWRDLIFQRIRAVFGFGI 360 (360)
Q Consensus 335 ~~~e~~~~GW~~~~~~~Ik~~fgfg~ 360 (360)
++++++||++|||++||++||||+
T Consensus 278 --ee~~~~~wq~yyf~~Ik~~FGfg~ 301 (301)
T KOG2936|consen 278 --EENTRQGWQEYYFEPIKATFGFGA 301 (301)
T ss_pred --hHHHHhhHHHHhhhHHHHhhccCC
Confidence 999999999999999999999997
No 2
>COG5580 Activator of HSP90 ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-64 Score=449.61 Aligned_cols=268 Identities=23% Similarity=0.495 Sum_probs=235.7
Q ss_pred ccCCCCceeeccCCChhHHHHHHhhhccceeecCCCceEEEEEEeeeEEeEEEEEeecCeeeeEEEEEEEEEEEEEeeCC
Q 018146 19 GANVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWEGEAKDG 98 (360)
Q Consensus 19 ~~N~NnWHW~EKn~~~Wak~~l~elL~~~~~~~~~~~~~~~i~~v~~v~Gda~v~~RKGK~i~~yd~~i~l~w~g~~~~~ 98 (360)
+.|||||||++|||+.|||+||++.|+++..+..+|...++|+.|+||+|||.|+|||||+||+|||.|.+..+|+ |+
T Consensus 3 v~nPnNwHWvdkdc~~WakEyfn~kL~s~~a~s~egk~~akItqvsSieGD~~VsqRKgKvI~lfDlkIsme~kge--dg 80 (272)
T COG5580 3 VKNPNNWHWVDKDCSAWAKEYFNEKLKSRGAESHEGKVMAKITQVSSIEGDSNVSQRKGKVICLFDLKISMECKGE--DG 80 (272)
T ss_pred ccCCCccccccccccHhHHHHHhhhhcccccccccCcceEEEEEeeeecccchhhhccCceeEEEEEEEEEEEEec--cC
Confidence 5699999999999999999999999999998877777899999999999999999999999999999999999996 44
Q ss_pred CCCceeeeeEEEEcccccCCCCCCCcEEEEEEccCCcchhhHHHHHHhcChhHHHHHHHHHHHHHHhcCCCCCccccCcC
Q 018146 99 DGGSLLKVDGLVEIPYISDENADENPEIRVSVKDEGPLGKRLKDAMWVKGKPVIEEKVKVYVEAMARGGPCKDELESKNV 178 (360)
Q Consensus 99 ~~~~~~~~~G~i~ipe~s~e~~~dd~~~~v~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~f~~~L~~~~~~~~~l~~~~~ 178 (360)
+|- .+.|+|+|||+++|. +.+.+.+...+. ..-++|++++|++|+.|.+|.++|+++|+.+++++...
T Consensus 81 dg~---~a~gsi~vpE~a~d~------fDi~ifs~~fe~--~egLvRee~lpk~rq~l~~f~~vllkthg~dIqv~~~~- 148 (272)
T COG5580 81 DGC---GARGSISVPEKAEDM------FDIEIFSGFFEE--MEGLVREEVLPKGRQVLDVFREVLLKTHGRDIQVEDAR- 148 (272)
T ss_pred Ccc---cccccEecchhhccc------ccchhhhchhhh--hhhhHHHHHHHHHHHHHHHHHHHHhhhcccCccccccc-
Confidence 553 699999999999972 223333332222 22399999999999999999999999997766654211
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccccccccceecccccccceeeEEEEEEEcCCHHHHHHHhcChhhHhcccCCCcc
Q 018146 179 SSKSKNDNISSSSSSSTSYVSQTVKNDVVAEKKEVKKEVKKKEGFKNISLSEKFSCRAKDLYEILMDENRWKGFTQSNAR 258 (360)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~ 258 (360)
|.+|....+|+||+++||++|+|++++.+|+++++.
T Consensus 149 --------------------------------------------tadi~~~~tfn~p~~ELy~tfLd~~ri~aWsrs~~~ 184 (272)
T COG5580 149 --------------------------------------------TADIIYKATFNCPVDELYNTFLDHERISAWSRSRAM 184 (272)
T ss_pred --------------------------------------------ccceeeecccCCcHHHHHHHhhCHHHhhhhcCChhh
Confidence 447888899999999999999999999999999988
Q ss_pred eeeecCeEEEEEcCeEEEEEEEEecCCEEEEEEEeCCCCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhH
Q 018146 259 ISKEVNGEISIFDGSVTGKNLELQEGKLIVQKWRFGSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVE 338 (360)
Q Consensus 259 ~d~~~GG~f~lf~G~v~G~~~el~p~~rIv~tWr~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e 338 (360)
++.++= ||+|+|.++++ +.+++|||+|++++|| +++..||.|++.. ..|+|++.|+|||.++ ++
T Consensus 185 f~~~p~----Lf~GnVi~~l~--Ekdkkiv~~WkL~~Ws--~~~e~tf~~~q~~-s~tkl~vk~~giPigE-------E~ 248 (272)
T COG5580 185 FEGDPI----LFDGNVIRRLR--EKDKKIVMEWKLREWS--DFTEATFMLEQYL-SSTKLTVKQRGIPIGE-------EG 248 (272)
T ss_pred ccCCCe----EeccHHHHHHH--HhCccEEEEEEcccCc--cccceEEEecccc-ccceEEEEEcCCccCc-------cc
Confidence 764432 99999999999 8999999999999999 7999999999965 8999999999999999 99
Q ss_pred HHHhhhHHHHHHHHHHhhccCC
Q 018146 339 NTERGWRDLIFQRIRAVFGFGI 360 (360)
Q Consensus 339 ~~~~GW~~~~~~~Ik~~fgfg~ 360 (360)
.++.+|++||+++||.+|||||
T Consensus 249 ~vr~n~qeyy~rpIk~~FGFga 270 (272)
T COG5580 249 SVRMNWQEYYFRPIKACFGFGA 270 (272)
T ss_pred eeeeehhhhEeeehhhhccccc
Confidence 9999999999999999999997
No 3
>PF09229 Aha1_N: Activator of Hsp90 ATPase, N-terminal; InterPro: IPR015310 This domain is predominantly found in the protein 'Activator of Hsp90 ATPase', it adopts a secondary structure consisting of an N-terminal alpha-helix leading into a four-stranded meandering antiparallel beta-sheet, followed by a C-terminal alpha-helix. The two helices are packed together, with the beta-sheet curving around them. They bind to the molecular chaperone HSP82 and stimulate its ATPase activity []. ; GO: 0001671 ATPase activator activity, 0051087 chaperone binding, 0005737 cytoplasm; PDB: 1USV_F 1USU_B 3N72_A.
Probab=100.00 E-value=5.5e-38 Score=270.66 Aligned_cols=136 Identities=40% Similarity=0.679 Sum_probs=121.2
Q ss_pred ccCCChhHHHHHHhhhcccee-ecCCCceEEEEEEeeeEEeEEEEEeecCeeeeEEEEEEEEEEEEEeeCCCCCceeeee
Q 018146 29 ETDCLEWSRNLLNGLLSDLTI-LDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWEGEAKDGDGGSLLKVD 107 (360)
Q Consensus 29 EKn~~~Wak~~l~elL~~~~~-~~~~~~~~~~i~~v~~v~Gda~v~~RKGK~i~~yd~~i~l~w~g~~~~~~~~~~~~~~ 107 (360)
||||++||++||+++|.++.+ ++++ ..|+|++|++|+|||+|++||||+|++|||+|+|+|+|+..++++. .++
T Consensus 1 EKd~t~Wak~~l~elL~~~~~~~~~~--~~v~v~~v~~v~GdA~v~~rKGK~i~~fd~~i~l~w~~~~~~~~~~---~~~ 75 (137)
T PF09229_consen 1 EKDCTPWAKDRLKELLPGLSVPEDGD--GSVKVTSVKSVEGDASVNQRKGKKIFIFDLKIKLKWEGKLKDGEEK---EVK 75 (137)
T ss_dssp EEETHHHHHHHHHHHHCT-EC-CSSS--CEEEEEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEEEEECTTSSE---EEE
T ss_pred CCCCCHHHHHHHHHHhccCEeccCCC--cEEEEEEeeeeceEEEEEEEcCcEEEEEEEEEEEEEEEEEcCCCCc---EEE
Confidence 799999999999999999998 4444 6899999999999999999999999999999999999997765553 699
Q ss_pred EEEEcccccCCCCCCCcEEEEEEccCCcchhhHHHHHHhcChhHHHHHHHHHHHHHHhcCCC
Q 018146 108 GLVEIPYISDENADENPEIRVSVKDEGPLGKRLKDAMWVKGKPVIEEKVKVYVEAMARGGPC 169 (360)
Q Consensus 108 G~i~ipe~s~e~~~dd~~~~v~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~f~~~L~~~~~~ 169 (360)
|+|+|||||+||+++||+|+|+++++++..++++++||+.+.|+||++|.+|+++|+++|++
T Consensus 76 G~i~ipe~s~d~~~~d~~~~v~~~~~~~~~~~~~~~v~~~~~~~i~~~l~~f~~~L~~~~~k 137 (137)
T PF09229_consen 76 GTIEIPEFSSDNDDDDYEFEVTVKDDSPESDALKDAVRKEGVPQIREKLEQFVKELKEEFSK 137 (137)
T ss_dssp EEEEEEEEECCCCTTT---EEEETT-SCCCCCHHHCCCCHCHHHHHHHHCCHHHHHHHHHT-
T ss_pred EEEEecccCCCCCccceEEEEEEcCCCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988877788999999999999999999999999999964
No 4
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=99.96 E-value=3.8e-29 Score=211.88 Aligned_cols=126 Identities=47% Similarity=0.832 Sum_probs=119.5
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceeeecCeEEEEEcCeEEEEEEEEecCCEEEEEEEeCCCCCCCeeEE
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISKEVNGEISIFDGSVTGKNLELQEGKLIVQKWRFGSWPDGIESTV 304 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~~~GG~f~lf~G~v~G~~~el~p~~rIv~tWr~~~wp~~~~S~V 304 (360)
+|++++.|+||+++||+|||||+.+++|+++.+++|+++||.|.+++|.+.|+|++++||++|+|+|.+.+||.+..++|
T Consensus 1 ~i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~~GG~~~~~~g~~~g~~~~i~p~~~l~~~w~~~~~~~~~~s~v 80 (126)
T cd08892 1 TISLTETFQVPAEELYEALTDEERVQAFTRSPAKVDAKVGGKFSLFGGNITGEFVELVPGKKIVQKWRFKSWPEGHYSTV 80 (126)
T ss_pred CeEEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecCCCCCEEEEeCCceEEEEEEEcCCCEEEEEEEcCCCCCCCcEEE
Confidence 47899999999999999999999999999988999999999999999999999999999999999999988887678999
Q ss_pred EEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhcc
Q 018146 305 RLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFGF 358 (360)
Q Consensus 305 titf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fgf 358 (360)
+++|++.+ ++|+|+|+|+|+|..+ .+.++.||..+|+++|+.+|||
T Consensus 81 ~~~l~~~~-~gT~ltl~~~g~~~~~-------~~~~~~GW~~~~~~~l~~~~~~ 126 (126)
T cd08892 81 TLTFTEKD-DETELKLTQTGVPAGE-------EERTREGWERYYFESIKQTFGY 126 (126)
T ss_pred EEEEEECC-CCEEEEEEEECCCCch-------HHHHHhhHHHHHHHHHHHHhCC
Confidence 99999964 8999999999999877 7899999999999999999997
No 5
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=99.96 E-value=1.8e-29 Score=216.13 Aligned_cols=129 Identities=33% Similarity=0.627 Sum_probs=115.1
Q ss_pred EcCCHHHHHHHhcChhhHhcccC-CCcceeeecCeEEEEEcCeEEEEEEEEecCCEEEEEEEeCCCCCCCeeEEEEEEEe
Q 018146 232 FSCRAKDLYEILMDENRWKGFTQ-SNARISKEVNGEISIFDGSVTGKNLELQEGKLIVQKWRFGSWPDGIESTVRLVFDE 310 (360)
Q Consensus 232 f~ap~e~v~~alTdpe~l~~W~~-~~~~~d~~~GG~f~lf~G~v~G~~~el~p~~rIv~tWr~~~wp~~~~S~Vtitf~~ 310 (360)
|+|||++||+|||||+++++|+. +.+++|+++||.|+++.|.+.|+|++++||+||+|+|++.+|+++++|+|+++|++
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~~~~~~d~~~GG~f~~~~~~~~G~~~ev~pp~rlv~tw~~~~~~~~~~s~vt~~~~~ 80 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLGSPAEMDAKVGGKFSLFNGSVEGEFTELEKPKKIVQKWRFRDWEEDVYSKVTIEFRA 80 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcCCCccccCCcCCEEEEecCceEEEEEEEcCCCEEEEEEecCCCCCCCceEEEEEEEe
Confidence 68999999999999999999965 45789999999999999999999999999999999999988887788999999999
Q ss_pred CCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhccCC
Q 018146 311 PEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFGFGI 360 (360)
Q Consensus 311 ~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fgfg~ 360 (360)
.++++|+|+|+|+|+|..+..+.....+++++||..+|+++|+++||||.
T Consensus 81 ~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l~~~~ 130 (132)
T PTZ00220 81 VEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKILGYPK 130 (132)
T ss_pred CCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHhCCCC
Confidence 64468999999999998664333334788999999989999999999983
No 6
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.89 E-value=4.3e-22 Score=171.90 Aligned_cols=128 Identities=19% Similarity=0.298 Sum_probs=106.8
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCC------cceeeecCeEEEEE----cC---eEEEEEEEEecCCEEEEEE
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSN------ARISKEVNGEISIF----DG---SVTGKNLELQEGKLIVQKW 291 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~------~~~d~~~GG~f~lf----~G---~v~G~~~el~p~~rIv~tW 291 (360)
+|++++.|+|||++||+|||||+++++|+++. +++|+++||+|.+. +| .+.|+|++++||++|+|+|
T Consensus 1 ~l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~l~~t~ 80 (142)
T cd07826 1 EIVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPERIVQTE 80 (142)
T ss_pred CEEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEEe
Confidence 48899999999999999999999999999865 57899999999985 23 3799999999999999999
Q ss_pred EeCCCCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 292 RFGSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 292 r~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
++.+++ +..+.|+++|++.+ ++|+|+|++. ++..+. ......+++++||.. .+++|+.+|.
T Consensus 81 ~~~~~~-~~~s~v~~~l~~~~-~gT~l~l~~~-~~~~~~-~~~~~~~~~~~Gw~~-~l~~L~~~l~ 141 (142)
T cd07826 81 EFEGLP-DGVALETVTFTELG-GRTRLTATSR-YPSKEA-RDGVLASGMEEGMEE-SYDRLDELLA 141 (142)
T ss_pred EecCCC-CCceEEEEEEEECC-CCEEEEEEEE-eCCHHH-HHHHHHhhHHHHHHH-HHHHHHHHHh
Confidence 998776 46899999999975 8999999855 665321 011235689999996 7999998873
No 7
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.87 E-value=3.8e-21 Score=166.41 Aligned_cols=125 Identities=19% Similarity=0.293 Sum_probs=105.4
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCC------cceeeecCeEEEEE----c-------C---eEEEEEEEEecC
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSN------ARISKEVNGEISIF----D-------G---SVTGKNLELQEG 284 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~------~~~d~~~GG~f~lf----~-------G---~v~G~~~el~p~ 284 (360)
+|++++.|+||+++||+|||||+++.+|+... +.+|+++||.|++. + | .+.|+|++++||
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~ 80 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPN 80 (146)
T ss_pred CEEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCC
Confidence 58899999999999999999999999999743 26899999999862 2 2 468999999999
Q ss_pred CEEEEEEEeCCCCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 285 KLIVQKWRFGSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 285 ~rIv~tWr~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
++|+|+|.+.+......++|+|+|++.+ ++|+|+++|+|+|.... .+.+..||.. ++.+|++++.
T Consensus 81 ~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~~T~lt~~~~~~~~~~~------~~~~~~GW~~-~l~~L~~~le 145 (146)
T cd08895 81 ERIVYTDVFDDPSLSGEMTMTWTLSPVS-GGTDVTIVQSGIPDGIP------PEDCELGWQE-SLANLAALVE 145 (146)
T ss_pred CEEEEEEEecCCCCCceEEEEEEEEecC-CCEEEEEEEeCCCchhh------hhHHHHHHHH-HHHHHHHHhc
Confidence 9999999985422224678999999975 89999999999987542 5799999995 7999999874
No 8
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.87 E-value=6e-21 Score=164.48 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=104.4
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCC-------CcceeeecCeEEEEE----cC---eEEEEEEEEecCCEEEEE
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQS-------NARISKEVNGEISIF----DG---SVTGKNLELQEGKLIVQK 290 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~-------~~~~d~~~GG~f~lf----~G---~v~G~~~el~p~~rIv~t 290 (360)
+|.+++.|+|||++||+|||||+++++|+++ .+.+|+++||.|.+. +| .+.|+|++++||++|+|+
T Consensus 1 ~~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~l~~t 80 (143)
T cd08900 1 TFTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDERIVYT 80 (143)
T ss_pred CEEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCceEEEE
Confidence 4789999999999999999999999999986 257899999999874 33 469999999999999999
Q ss_pred EEeCCCC-CCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 291 WRFGSWP-DGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 291 Wr~~~wp-~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
|.+..+. ...+++|+++|++.+ ++|+|+|+|.+....+. ...+++..||.. .+++|+.+++
T Consensus 81 ~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~-~l~~L~~~l~ 142 (143)
T cd08900 81 YTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAA-LLDNLAAELE 142 (143)
T ss_pred EeeccCCccccceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHH-HHHHHHHHHh
Confidence 9875431 234689999999965 88999999998532210 016899999996 6799999875
No 9
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.86 E-value=6.8e-21 Score=163.15 Aligned_cols=128 Identities=21% Similarity=0.320 Sum_probs=105.9
Q ss_pred EEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceeeecCeEEEE----EcCeEEEEEEEEecCCEEEEEEEeCCCCCCCe
Q 018146 226 ISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISKEVNGEISI----FDGSVTGKNLELQEGKLIVQKWRFGSWPDGIE 301 (360)
Q Consensus 226 i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~~~GG~f~l----f~G~v~G~~~el~p~~rIv~tWr~~~wp~~~~ 301 (360)
+..+..|+|||++||+|||+|+++++|+.+...+++++||.|.+ +++.+.|+|++++||++|+|+|+.. +.+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~p~~~l~~~w~~~----~~~ 77 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRLEEGKTVTWDWEMYGASVPVNVLEIEPNKRIVIEWGDP----GEP 77 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCccccCCCEEEEEEEccCCceEEEEEEEcCCCEEEEEecCC----CCC
Confidence 46788999999999999999999999988777889999998664 3567899999999999999999853 357
Q ss_pred eEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhccC
Q 018146 302 STVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFGFG 359 (360)
Q Consensus 302 S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fgfg 359 (360)
++|+|+|++.++++|+|+|+|+|+|..+.. .....+++..||.. .++.|+.++.-|
T Consensus 78 s~v~~~l~~~~~ggT~ltl~~~~~~~~~~~-~~~~~~~~~~GW~~-~L~~L~~~le~g 133 (136)
T cd08901 78 TTVEWTFEELDDGRTFVTITESGFPGTDDE-GLKQALGSTEGWTL-VLAGLKAYLEHG 133 (136)
T ss_pred EEEEEEEEECCCCcEEEEEEECCCCCCcHH-HHHHHhcCCCCHHH-HHHHHHHHHhcC
Confidence 999999999644789999999999976510 00013457799996 789999998766
No 10
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.85 E-value=2e-20 Score=159.45 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=99.9
Q ss_pred EEEEEEEcCCHHHHHHHhcChhhHhcccCCC-------cceeeecCeEEEEE----cC----eEEEEEEEEecCCEEEEE
Q 018146 226 ISLSEKFSCRAKDLYEILMDENRWKGFTQSN-------ARISKEVNGEISIF----DG----SVTGKNLELQEGKLIVQK 290 (360)
Q Consensus 226 i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~-------~~~d~~~GG~f~lf----~G----~v~G~~~el~p~~rIv~t 290 (360)
|++++.|+||+++||+|||||+++.+|+.++ +++|+++||+|++. +| .+.|+|++++||++|+|+
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~~l~~~ 81 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHKLIEYT 81 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCCEEEEE
Confidence 7899999999999999999999999998642 45899999999984 33 369999999999999999
Q ss_pred EEeCCCCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 291 WRFGSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 291 Wr~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
|. . .++|+++|++.+ ++|+|+|+|.+.+... .+.++.||.. .+.+||+++.
T Consensus 82 ~~-----~--~~~v~~~l~~~~-~gT~l~l~~~~~~~~~-------~~~~~~GW~~-~l~~L~~~le 132 (133)
T cd08897 82 ME-----D--GREVEVEFTEEG-DGTKVVETFDAENENP-------VEMQRQGWQA-ILDNFKKYVE 132 (133)
T ss_pred cC-----C--CCEEEEEEEECC-CCEEEEEEECCCCCCc-------HHHHHHHHHH-HHHHHHHHhh
Confidence 84 1 368999999965 8899999999877654 7889999985 7899999874
No 11
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.84 E-value=1.1e-19 Score=157.15 Aligned_cols=129 Identities=18% Similarity=0.242 Sum_probs=102.3
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCC------cceeeecCeEEEEE----cCe---EEEEEEEEecCCEEEEEE
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSN------ARISKEVNGEISIF----DGS---VTGKNLELQEGKLIVQKW 291 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~------~~~d~~~GG~f~lf----~G~---v~G~~~el~p~~rIv~tW 291 (360)
+|.+++.|+||+++||+|||||+.+.+|++++ +++|+++||.|.+. +|. +.|+|++++||++|+|+|
T Consensus 1 ~l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~l~~t~ 80 (146)
T cd08896 1 DLVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGERLVFTD 80 (146)
T ss_pred CeEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCCEEEEEE
Confidence 47899999999999999999999999999753 57899999999874 232 589999999999999999
Q ss_pred EeCC-CCC-CC-eeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 292 RFGS-WPD-GI-ESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 292 r~~~-wp~-~~-~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
.+.+ |.. .. .++|+++|++.+ ++|+|+|+|...+.... ......++..||.. .+.+|++++.
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~~~~~--~~~~~~~~~~GW~~-~l~~L~~~l~ 145 (146)
T cd08896 81 ALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARHWTEADR--KQHEEMGFHDGWGT-AADQLAALAE 145 (146)
T ss_pred eecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEeCCHHHH--HHHHHcCHHHHHHH-HHHHHHHHHh
Confidence 8853 422 22 378999999965 89999999887654320 00112456899995 8999999874
No 12
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.84 E-value=7.1e-20 Score=157.15 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=101.1
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCC------cceeeecCeEEEE--E--cCe---EEEEEEEEecCCEEEEEE
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSN------ARISKEVNGEISI--F--DGS---VTGKNLELQEGKLIVQKW 291 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~------~~~d~~~GG~f~l--f--~G~---v~G~~~el~p~~rIv~tW 291 (360)
+|++++.|+||+++||+|||||+++++|+++. +.+|+++||.|++ . +|. ..|+|++++||++|+|+|
T Consensus 1 ~l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~~l~~t~ 80 (139)
T cd08894 1 EIVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPERIVYDH 80 (139)
T ss_pred CEEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEEe
Confidence 37899999999999999999999999999632 3678999999886 2 242 479999999999999999
Q ss_pred EeCCCCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 292 RFGSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 292 r~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
++. +..++|+++|++.+ ++|+|+|+|...+..++ ...+..++..||.. .+.+|++++.
T Consensus 81 ~~~----~~~~~v~~~~~~~~-~gT~ltl~~~~~~~~~~--~~~~~~~~~~Gw~~-~l~~L~~~l~ 138 (139)
T cd08894 81 GSG----PPRFRLTVTFEEQG-GKTRLTWRQVFPTAAER--CEKIKFGAVEGNEQ-TLDRLAAYLA 138 (139)
T ss_pred ccC----CCcEEEEEEEEECC-CCEEEEEEEEcCCHHHH--HHHHHhCHHHHHHH-HHHHHHHHHh
Confidence 864 35789999999865 89999999974433221 11224678999995 7999999874
No 13
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=99.83 E-value=3.7e-20 Score=154.11 Aligned_cols=116 Identities=32% Similarity=0.564 Sum_probs=101.4
Q ss_pred cCCHHHHHHHhcChhhHhcc-cCCCcceeeecCeEEEE--EcC---eEEEEEEEEecCCEEEEEEEeCCCCCCCeeEEEE
Q 018146 233 SCRAKDLYEILMDENRWKGF-TQSNARISKEVNGEISI--FDG---SVTGKNLELQEGKLIVQKWRFGSWPDGIESTVRL 306 (360)
Q Consensus 233 ~ap~e~v~~alTdpe~l~~W-~~~~~~~d~~~GG~f~l--f~G---~v~G~~~el~p~~rIv~tWr~~~wp~~~~S~Vti 306 (360)
+||+++||+|||+|+++++| +.+.+.+++++||+|++ .+| ...|+|++++||++|+++|++.+++++..++|++
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~~~~~~Gg~~~~~~~~g~~~~~~~~v~~~~p~~~i~~~~~~~~~~~~~~~~v~~ 80 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTTSEAEMDFRPGGSFRFMDPDGGEFGFDGTVLEVEPPERIVFTWRMPDDPDGPESRVTF 80 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEEEEEEEECSTTEEEEEEETTSEEEEEEEEEEEEETTTEEEEEEEEETSSSCEEEEEEE
T ss_pred CcCHHHHHHHHCCHhHHhhccCCCcceeeeecCCEEEEEecCCCCceeeEEEEEEeCCEEEEEEEEccCCCCCCceEEEE
Confidence 69999999999999999999 45667889999999999 333 3688899999999999999998887777999999
Q ss_pred EEEeCCCCeEEEEEEEeecCCcccccCchhhHH-HHhhhHHHHHHHHHHhh
Q 018146 307 VFDEPEPGVTVVKLTHNDVPEEDRYGNATVVEN-TERGWRDLIFQRIRAVF 356 (360)
Q Consensus 307 tf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~-~~~GW~~~~~~~Ik~~f 356 (360)
+|++. +++|+|+|+|++++..+. .+. +..||+. ++.+||+++
T Consensus 81 ~~~~~-~~~T~l~~~~~~~~~~~~------~~~~~~~gw~~-~l~~L~~~l 123 (124)
T PF08327_consen 81 EFEEE-GGGTRLTLTHSGFPDDDE------EEEGMEQGWEQ-MLDRLKAYL 123 (124)
T ss_dssp EEEEE-TTEEEEEEEEEEEHSHHH------HHHCHHHHHHH-HHHHHHHHH
T ss_pred EEEEc-CCcEEEEEEEEcCCccHH------HHHHHHHHHHH-HHHHHHHHh
Confidence 99995 599999999999998772 344 9999996 559999987
No 14
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=99.83 E-value=8.9e-20 Score=158.36 Aligned_cols=129 Identities=16% Similarity=0.299 Sum_probs=102.1
Q ss_pred EEEEEEEcCCHHHHHHHhcChhhHhcccCC----------CcceeeecCeEEEEEc--Ce--EEEEEEEEecCCEEEEEE
Q 018146 226 ISLSEKFSCRAKDLYEILMDENRWKGFTQS----------NARISKEVNGEISIFD--GS--VTGKNLELQEGKLIVQKW 291 (360)
Q Consensus 226 i~~~~~f~ap~e~v~~alTdpe~l~~W~~~----------~~~~d~~~GG~f~lf~--G~--v~G~~~el~p~~rIv~tW 291 (360)
|++++.|+|||++||+|||| .+.+|+.+ .+.+|+++||.|.+.. |. ..|+|++++||++|+|+|
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~~~~~g~~~~~g~v~~v~p~~~l~~tw 79 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYEIGEDGTECEWGTVLAWEPPSRLVFTW 79 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEEecCCCcEeceEEEEEEcCCCEEEEEe
Confidence 78999999999999999999 58999863 3468999999998763 43 489999999999999999
Q ss_pred EeC-CCCC--CCeeEEEEEEEeCCCCeEEEEEEEeecCCccc-ccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 292 RFG-SWPD--GIESTVRLVFDEPEPGVTVVKLTHNDVPEEDR-YGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 292 r~~-~wp~--~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~-~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
++. +|+. ...++|+++|++.+.++|+|+|+|+|++.... .......+++..||.. ++++|+++++
T Consensus 80 ~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~-~L~~L~~~l~ 148 (149)
T cd08891 80 QINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPL-LLERYAAAAE 148 (149)
T ss_pred ccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHH-HHHHHHHHhc
Confidence 953 4532 23689999999953278999999999975320 0001225689999996 7899999885
No 15
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=99.83 E-value=1.7e-19 Score=152.23 Aligned_cols=125 Identities=18% Similarity=0.309 Sum_probs=107.7
Q ss_pred EEEEEEEcCCHHHHHHHhcChhhHhcccCC-CcceeeecCeEEEEEcCe-----EEEEEEEEecCCEEEEEEEeCCCC--
Q 018146 226 ISLSEKFSCRAKDLYEILMDENRWKGFTQS-NARISKEVNGEISIFDGS-----VTGKNLELQEGKLIVQKWRFGSWP-- 297 (360)
Q Consensus 226 i~~~~~f~ap~e~v~~alTdpe~l~~W~~~-~~~~d~~~GG~f~lf~G~-----v~G~~~el~p~~rIv~tWr~~~wp-- 297 (360)
+.+++.|+|||++||++|||++.+.+|+.+ .+.+++++||+|.++.+. +.|+|++++||++|+++|.+..++
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~ 81 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTTVESDWKVGSAFEYRRGDDGTVDVEGEVLESDPPRRLVHTWRAVWDPEM 81 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheecccccccCCcCCCeEEEEeCCCcccccceEEEEecCCCeEEEEEecCCCccc
Confidence 678999999999999999999999999986 356789999999987543 799999999999999999976653
Q ss_pred -CCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 298 -DGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 298 -~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
.++.+.+++.|++.+ ++|+|+++|++++.+. ...+.++.||.. +++.||+++.
T Consensus 82 ~~~~~~~v~~~l~~~~-~~t~l~~~~~~~~~~~-----~~~~~~~~gw~~-~l~~Lk~~~e 135 (136)
T cd08893 82 AAEPPSRVTFEIEPVG-DVVKLTVTHDGFPPGS-----PTLEGVSGGWPA-ILSSLKTLLE 135 (136)
T ss_pred CCCCCEEEEEEEEecC-CcEEEEEEecCCCCch-----hHHHhhhcCHHH-HHHHHHHHhc
Confidence 356899999999965 7999999999998753 127899999996 7899999864
No 16
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.74 E-value=5.2e-17 Score=138.67 Aligned_cols=131 Identities=14% Similarity=0.233 Sum_probs=102.3
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCC---cceeeecCeEEEEEc---CeEEEEEEEEecCCEEEEEEEeCC---
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSN---ARISKEVNGEISIFD---GSVTGKNLELQEGKLIVQKWRFGS--- 295 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~---~~~d~~~GG~f~lf~---G~v~G~~~el~p~~rIv~tWr~~~--- 295 (360)
+|+.+..|+|||++||++|||++.+.+|+... ....+..||.+...+ +.+.|+|++++|+++|+++|....
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~~~ 81 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKLGPFVVGEGATGEITYPGYEHGVFPVTVVEVDPPRRFSFRWHPPAIDP 81 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccCCCcccCCcceeEEecCCCCccceEEEEEEeCCCcEEEEEecCCCccc
Confidence 57889999999999999999999999999863 344556666666544 457899999999999999997543
Q ss_pred ---CCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 296 ---WPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 296 ---wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
++.+..+.++++|++.+ ++|+|+++|+|++...........+.+..||.. ++..||+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~-~l~~L~~~le 144 (145)
T cd08898 82 GEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERRAEAYRMNEGGWDE-QLENLVAYVE 144 (145)
T ss_pred ccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHH-HHHHHHHHhc
Confidence 22345688999999975 889999999998764210111136789999995 7899999874
No 17
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=6.6e-17 Score=141.23 Aligned_cols=130 Identities=21% Similarity=0.409 Sum_probs=99.0
Q ss_pred cceeeEEEEEEEcCCHHHHHHHhcChhhHhcccCCC-cceeeecCeEEEE-E---cC---eEEEEEEEEecCCEEEEEEE
Q 018146 221 EGFKNISLSEKFSCRAKDLYEILMDENRWKGFTQSN-ARISKEVNGEISI-F---DG---SVTGKNLELQEGKLIVQKWR 292 (360)
Q Consensus 221 ~~t~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~-~~~d~~~GG~f~l-f---~G---~v~G~~~el~p~~rIv~tWr 292 (360)
....+|.+++.|++||++||+|||||+.+++|+.+. +.+|+++||.+.+ + +| ...|+|++++||+||+|+|.
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~~~~~~~d~r~gg~~~~~~~~~~g~~~~~~~~~~~v~p~~rIv~tw~ 84 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEALTDPELLARWFMPGGAEFDARTGGGERVRFRGPDGPVHSFEGEYLEVVPPERIVFTWD 84 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHhcCHHHHHhhcCCCCCccceecCCceEEeeecCCCCeeecceEEEEEcCCcEEEEEec
Confidence 456789999999999999999999999999999822 4589999998875 2 44 35999999999999999999
Q ss_pred eCCCCCC-CeeEEEEEEEeCCCCe--EEEEEEEee-cCCcccccCchhhHH--HHhhhHHHHHHHHHHhhc
Q 018146 293 FGSWPDG-IESTVRLVFDEPEPGV--TVVKLTHND-VPEEDRYGNATVVEN--TERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 293 ~~~wp~~-~~S~Vtitf~~~~~g~--T~L~l~~~g-vp~~~~~~~~~~~e~--~~~GW~~~~~~~Ik~~fg 357 (360)
+.++... ..+.|+++|.+...|+ |.+...|.+ ++..+. ... +..||.. +++.|++++.
T Consensus 85 ~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~Gw~~-~~~~l~~~l~ 148 (149)
T COG3832 85 FDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGGGFLEDEDQ------KLGMGMEEGWGQ-LLDNLKALLE 148 (149)
T ss_pred cCCCCCcccCceEEEEEEEecCCCcEEEEEEeeccccchhHH------HhCcchhhhHHH-HHHHHHHhhc
Confidence 8764422 2578888888854333 555555555 344331 223 4999995 8999998875
No 18
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.73 E-value=6.8e-17 Score=141.84 Aligned_cols=123 Identities=21% Similarity=0.305 Sum_probs=107.7
Q ss_pred ceeeEEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceeeecCeEEEEE-cC----eEEEEEEEEecCCEEEEEEEeCCC
Q 018146 222 GFKNISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISKEVNGEISIF-DG----SVTGKNLELQEGKLIVQKWRFGSW 296 (360)
Q Consensus 222 ~t~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~~~GG~f~lf-~G----~v~G~~~el~p~~rIv~tWr~~~w 296 (360)
+..+|++++.|+||+++||++|+||+.+.+|+. +..+++++||.|++. .+ ...|+|++++|+++|+++|...+
T Consensus 9 ~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~-~~~~~~~~G~~~~~~~~~~~~~~~~~~v~e~~p~~~l~~~~~~~~- 86 (157)
T cd08899 9 GGATLRFERLLPAPIEDVWAALTDPERLARWFA-PGTGDLRVGGRVEFVMDDEEGPNATGTILACEPPRLLAFTWGEGG- 86 (157)
T ss_pred CCeEEEEEEecCCCHHHHHHHHcCHHHHHhhcC-CCCCCcccCceEEEEecCCCCCccceEEEEEcCCcEEEEEecCCC-
Confidence 457899999999999999999999999999998 567889999999874 32 46899999999999999998543
Q ss_pred CCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 297 PDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 297 p~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
..+.++++|++.+ ++|+|+++|++++..+ ..+.+..||+. ++..||+++.
T Consensus 87 ---~~~~~~~~l~~~~-~gT~v~~~~~~~~~~~------~~~~~~~GW~~-~L~~Lk~~~e 136 (157)
T cd08899 87 ---GESEVRFELAPEG-DGTRLTLTHRLLDERF------GAGAVGAGWHL-CLDVLEAALE 136 (157)
T ss_pred ---CCceEEEEEEEcC-CCEEEEEEEeccCchh------hhhhhcccHHH-HHHHHHHHHc
Confidence 5688999999865 8899999999998774 27899999995 7999999885
No 19
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.63 E-value=7.8e-15 Score=123.80 Aligned_cols=129 Identities=28% Similarity=0.505 Sum_probs=107.0
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCC--CcceeeecCeEEEEE-c------CeEEEEEEEEecCCEEEEEEEeCC
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQS--NARISKEVNGEISIF-D------GSVTGKNLELQEGKLIVQKWRFGS 295 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~--~~~~d~~~GG~f~lf-~------G~v~G~~~el~p~~rIv~tWr~~~ 295 (360)
.|..+..|+|||++||++|+|++.+.+|+.. .+..++.+||.+.++ . +.+.+++++++||++|.++|+...
T Consensus 1 ~i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g~~~~~~~~i~~~~~~~~i~~~~~~~~ 80 (139)
T cd07814 1 TITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDGEEGWVSGEVLEVEPPRRLVFTWAFSD 80 (139)
T ss_pred CeEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCCCEEeccEEEEEEcCCCeEEEEecccC
Confidence 3678899999999999999999999999974 567788999998864 1 246899999999999999999876
Q ss_pred CCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 296 WPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 296 wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
+|....+.+++.|++.+ ++|+|++++.+.+.... -....+.+..||.. ++++||.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~-~l~~lk~~~E 138 (139)
T cd07814 81 ETPGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTG-TLDRLKALLE 138 (139)
T ss_pred CCCCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHH-HHHHHHHHhh
Confidence 64566889999999976 88999999999987521 11237899999996 6699999864
No 20
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=6.2e-12 Score=107.36 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=94.6
Q ss_pred EEEEEEEcCCHHHHHHHhcChhhHhcccCCCc-------ceeeecCeEEEEE----cC--eEEEEEEEEecCCEEEEEEE
Q 018146 226 ISLSEKFSCRAKDLYEILMDENRWKGFTQSNA-------RISKEVNGEISIF----DG--SVTGKNLELQEGKLIVQKWR 292 (360)
Q Consensus 226 i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~-------~~d~~~GG~f~lf----~G--~v~G~~~el~p~~rIv~tWr 292 (360)
|+.++.|+|||++||++|+|++.+.+|+.... ..++++|++|.+. ++ .+.++|++++|+++|++++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p~~~l~~~~~ 81 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGPYRITNHVVAFEENRLIAWRPG 81 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCceEEEEEEEEECCCCEEEEEcc
Confidence 67899999999999999999999999985321 2347999999874 12 46889999999999988876
Q ss_pred eCCCCCCCeeEEEEEEEeCCCCeEEEEEEEe--ecCCcccccCchhhHHHHhhhHHHHHHHHHHhh
Q 018146 293 FGSWPDGIESTVRLVFDEPEPGVTVVKLTHN--DVPEEDRYGNATVVENTERGWRDLIFQRIRAVF 356 (360)
Q Consensus 293 ~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~--gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~f 356 (360)
+.+.+. ..+.++++|++.++++|+|++++. |.+...+ .......+..||++ -+++|++++
T Consensus 82 ~~~~~~-~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~--~~~~~~~~~~g~~~-~l~~L~~~~ 143 (144)
T cd07825 82 PAGQEP-GGHRWRWELEPIGPGRTRVTETYDWSAVTDLKE--LLGFPAFPEVQLEA-SLDRLATLA 143 (144)
T ss_pred CCCCCC-CceeEEEEEEECCCCcEEEEEEEeccCChhhhh--ccccCCCCHHHHHH-HHHHHHHHh
Confidence 544332 346788999986557899998874 3333211 01123567999995 689999876
No 21
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.16 E-value=1.7e-09 Score=90.73 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=95.9
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceeee-----cCeEEEEE--c-CeEEEEEEEEecC-CEEEEEEEeCC
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISKE-----VNGEISIF--D-GSVTGKNLELQEG-KLIVQKWRFGS 295 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~~-----~GG~f~lf--~-G~v~G~~~el~p~-~rIv~tWr~~~ 295 (360)
.|+.++.|+||+++||++|+|++.+..|+.....++.. +|..+.+. + +.+.++|++++|+ ++|.+++...+
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~~~~~~~~~i~~~~~~~~ 81 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDGGTVRERLLALDDAERRYSYRIVEGP 81 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCCCEEEEEehhcCccCCEEEEEecCCC
Confidence 47788999999999999999999999998754333332 46666543 2 4578899999999 99988877543
Q ss_pred CCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhh
Q 018146 296 WPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVF 356 (360)
Q Consensus 296 wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~f 356 (360)
.|- .....+++|++.++++|+|++++..-+.+. .....+...++.+|.. -++.|++++
T Consensus 82 ~~~-~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~L~~~~ 139 (140)
T cd07821 82 LPV-KNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRA-GLAALKAAL 139 (140)
T ss_pred CCc-ccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHH-HHHHHHHhh
Confidence 332 245678999997655899999999877653 2223345778888874 789998876
No 22
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.12 E-value=1.7e-09 Score=90.78 Aligned_cols=127 Identities=9% Similarity=0.043 Sum_probs=91.4
Q ss_pred EEEEEEEcCCHHHHHHHhcChhhHhcccCCC--ccee-eecCeEEEEE--c-----CeEEEEEEEEecCCEEEEEEEeCC
Q 018146 226 ISLSEKFSCRAKDLYEILMDENRWKGFTQSN--ARIS-KEVNGEISIF--D-----GSVTGKNLELQEGKLIVQKWRFGS 295 (360)
Q Consensus 226 i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~--~~~d-~~~GG~f~lf--~-----G~v~G~~~el~p~~rIv~tWr~~~ 295 (360)
|+.+..|+||+++||++|+|++.+.+|+..- ++.. +.+|++|.+. . ..+.+++++++||++|++++....
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~~~~ 81 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGGPPRSFKPRVTEVEPPRRLAWRGGLPF 81 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCCCcEEEEEEEEEEcCCCEeEEEecCCC
Confidence 6788999999999999999999999998532 2333 6799999874 1 246889999999999988876532
Q ss_pred CCCCCeeEEEEEEEeCCCCeEEEEEEEe--ecCCcccccCchhhHHHHhhhHHHHHHHHHHhh
Q 018146 296 WPDGIESTVRLVFDEPEPGVTVVKLTHN--DVPEEDRYGNATVVENTERGWRDLIFQRIRAVF 356 (360)
Q Consensus 296 wp~~~~S~Vtitf~~~~~g~T~L~l~~~--gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~f 356 (360)
.+ ......+++|++.++++|+|++.+. |++... -...+...++.+++. .++.||...
T Consensus 82 ~~-~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~-~~~~L~~~~ 140 (141)
T cd07822 82 PG-LLDGEHSFELEPLGDGGTRFVHRETFSGLLAPL--VLLGLGRDLRAGFEA-MNEALKARA 140 (141)
T ss_pred Cc-EeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHH--hhhhhHHHHhHhHHH-HHHHHHHhh
Confidence 11 1236678999997458999988754 543321 001135677788875 588888764
No 23
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=98.98 E-value=2.5e-08 Score=83.91 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=91.1
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCCccee----e-ecCeEEEEEc---CeEEEEEEEEecCCEEEEEEEeCCC
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSNARIS----K-EVNGEISIFD---GSVTGKNLELQEGKLIVQKWRFGSW 296 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d----~-~~GG~f~lf~---G~v~G~~~el~p~~rIv~tWr~~~w 296 (360)
.+..+..|+||++.||++++|++.+.+|...-..++ . .+|..|++.. ..+.+++++++||++|+ |+...
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~p~~~~~--~~~~~- 78 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGLVRSTFTVTELRPGHSFT--WTGPA- 78 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCCCceEEEEEEecCCCEEE--EEecC-
Confidence 467889999999999999999999999987432222 2 5688898753 24789999999999985 54432
Q ss_pred CCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 297 PDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 297 p~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
++....++++|++.++++|+|++++.--..........+...++.+|+. .++.||..+.
T Consensus 79 -~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lk~~~E 137 (138)
T cd08862 79 -PGISAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPE-WLEGLKAAAE 137 (138)
T ss_pred -CCEEEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHH-HHHHHHHHhc
Confidence 2345578999998654799999877532211111112345678899985 6899988653
No 24
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.93 E-value=4.7e-08 Score=83.97 Aligned_cols=130 Identities=14% Similarity=0.116 Sum_probs=93.3
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccC--CC---c-----ceeeecCeEEEEEc----CeEEEEEEEEecCCEEEEE
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQ--SN---A-----RISKEVNGEISIFD----GSVTGKNLELQEGKLIVQK 290 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~--~~---~-----~~d~~~GG~f~lf~----G~v~G~~~el~p~~rIv~t 290 (360)
.++.++.|+||+++||++++|++.+.+|.. .. + .....+|+.|.+.. |....++++++||++|+++
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~p~~~i~~~ 82 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEMEITESVPNERIEYE 82 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEEEEEecCCCcEEEEE
Confidence 578889999999999999999999999964 11 1 12356788887643 3457889999999999999
Q ss_pred EEeCCCCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCccc---ccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 291 WRFGSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDR---YGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 291 Wr~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~---~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
|.+.+ |.......+++|++.+ ++|+|+++.++-..... .....+...++..++. .+++||+.++
T Consensus 83 ~~~~~-~~~~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lk~~~E 149 (150)
T cd07818 83 LRFIK-PFEATNDVEFTLEPVG-GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEK-GLANLKAVLE 149 (150)
T ss_pred EEecC-CccccceEEEEEEEcC-CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhh
Confidence 98632 2112568999999975 88999999986443211 0011224566777764 6888888763
No 25
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.82 E-value=2.4e-07 Score=78.33 Aligned_cols=130 Identities=11% Similarity=0.054 Sum_probs=86.1
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceeeecCeEEEEE-----cC---e--EEEEEEEEecCCEEEEEEEeC
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISKEVNGEISIF-----DG---S--VTGKNLELQEGKLIVQKWRFG 294 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~~~GG~f~lf-----~G---~--v~G~~~el~p~~rIv~tWr~~ 294 (360)
.+..++.|+|||++||++|+|++.+.+|+.....++...++.|... ++ . ..++|.+++||+++++++...
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKVGPVKGTFKGKVELSDLDPPESYTITGEGK 81 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEEccEEEEEEEEEEEEecCCCcEEEEEEEEc
Confidence 4677899999999999999999999999965444554445555431 11 2 257888899999998887643
Q ss_pred CCCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcc--cccCchhhHHHHhhhHHHHHHHHHHhh
Q 018146 295 SWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEED--RYGNATVVENTERGWRDLIFQRIRAVF 356 (360)
Q Consensus 295 ~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~--~~~~~~~~e~~~~GW~~~~~~~Ik~~f 356 (360)
..........+++|++. +++|+|++++.--+.+. .+....+....+.... .++++||+.+
T Consensus 82 ~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~-~~~~~l~~~~ 143 (144)
T cd05018 82 GGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLIN-QFFENLASKI 143 (144)
T ss_pred CCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 22111256788999997 48899999987443332 0111112233444444 5788888764
No 26
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.61 E-value=1.7e-06 Score=72.20 Aligned_cols=125 Identities=17% Similarity=0.169 Sum_probs=87.1
Q ss_pred EEEEEEcCCHHHHHHHhcChhhHhcccCCCcce------eeecCeEEEEE---cC---eEEEEEEEEecCCEEEEEEEeC
Q 018146 227 SLSEKFSCRAKDLYEILMDENRWKGFTQSNARI------SKEVNGEISIF---DG---SVTGKNLELQEGKLIVQKWRFG 294 (360)
Q Consensus 227 ~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~------d~~~GG~f~lf---~G---~v~G~~~el~p~~rIv~tWr~~ 294 (360)
+.+..++||+++||+.|+|++.+.+|......+ ...+|..|.+. .| .+..++++.+||+++.+.+...
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p~~~~~~~~~~~ 81 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEPGRRVVFRGSSG 81 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecCCcEEEEEecCC
Confidence 567889999999999999999999998643222 23568888762 33 3578899999999887766432
Q ss_pred CCCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcc-cccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 295 SWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEED-RYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 295 ~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~-~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
+ .....+++|++.+ ++|+|++++..-+..- +.....+....+.+++. .+++||+.+.
T Consensus 82 --~--~~~~~~~~~~~~~-~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lk~~~e 139 (140)
T cd08865 82 --P--FPYEDTYTFEPVG-GGTRVRYTAELEPGGFARLLDPLMAPAFRRRARA-ALENLKALLE 139 (140)
T ss_pred --C--cceEEEEEEEEcC-CceEEEEEEEEccchhHHHHHHHHHHHHhhhhHH-HHHHHHHHhh
Confidence 2 2346789999875 7899999987544221 11111234456677764 7888888764
No 27
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.60 E-value=1.6e-06 Score=72.92 Aligned_cols=127 Identities=15% Similarity=0.128 Sum_probs=82.4
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceeeecCeEEE--EEc--C---eEEEEEEEEecCCEEEEEEEeCCCC
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISKEVNGEIS--IFD--G---SVTGKNLELQEGKLIVQKWRFGSWP 297 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~~~GG~f~--lf~--G---~v~G~~~el~p~~rIv~tWr~~~wp 297 (360)
+++.+..|+||+++||++|+|++.+.+|+..-..+++..|+.+. +.. | ...+++++++||++|++. ...-+
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~i~~~--~~~~~ 78 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKAKGPAGLSVEWDAEITEQVPNERIAWR--SVEGA 78 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEEecCCCCcEEEEEEEeccCCCCEEEEE--ECCCC
Confidence 36778899999999999999999999999755555554444333 322 4 357888899999987554 43312
Q ss_pred CCCeeEEEEEEEeCCCCeEEEEEEEeecCCccccc---CchhhHHHHhhhHHHHHHHHHHhh
Q 018146 298 DGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDRYG---NATVVENTERGWRDLIFQRIRAVF 356 (360)
Q Consensus 298 ~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~~~---~~~~~e~~~~GW~~~~~~~Ik~~f 356 (360)
. ....+++|++.++++|+|++....-|.....+ ........+..-+. .+++||+..
T Consensus 79 ~--~~~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lk~~a 137 (139)
T cd07817 79 D--PNAGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLRE-DLRRFKQLV 137 (139)
T ss_pred C--CcceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHH-HHHHHHHHh
Confidence 1 34577888886545899999987766543100 00112233344443 567777654
No 28
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.56 E-value=7.7e-07 Score=76.68 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=72.6
Q ss_pred EEEEEEEcCCHHHHHHHhcChhhHhcccCCCcc-------eeeecCeEEEE--Ec--C---eEEEEEEEEecCCEEEEEE
Q 018146 226 ISLSEKFSCRAKDLYEILMDENRWKGFTQSNAR-------ISKEVNGEISI--FD--G---SVTGKNLELQEGKLIVQKW 291 (360)
Q Consensus 226 i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~-------~d~~~GG~f~l--f~--G---~v~G~~~el~p~~rIv~tW 291 (360)
++.+..|+|||++||++++|++.+..|+..-.. .+..+|+.|++ .+ | .+.+++++++|+++|+++|
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~ 82 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEPLSLLEVRA 82 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecCCcEEEEEE
Confidence 466789999999999999999999999974221 23567788864 21 3 3678889999999999887
Q ss_pred EeCCCCCCCeeEEEEEEEeCCCCeEEEEEEEeecC
Q 018146 292 RFGSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVP 326 (360)
Q Consensus 292 r~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp 326 (360)
.. + .....+++|++.+ ++|+|+++++.-.
T Consensus 83 ~g---~--~~~~~~~~~~~~~-~gt~vt~~~~~~~ 111 (146)
T cd07824 83 SG---D--LEGVGRWTLAPDG-SGTVVRYDWEVRT 111 (146)
T ss_pred EE---e--eeEEEEEEEEEcC-CCEEEEEEEEEEc
Confidence 52 1 2346889999865 7899999997554
No 29
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.55 E-value=3.2e-06 Score=72.80 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=79.7
Q ss_pred EEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceeeecCeEEEE----E-c---CeEEE--EEEEEe-cCCEEEEEEEeC
Q 018146 226 ISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISKEVNGEISI----F-D---GSVTG--KNLELQ-EGKLIVQKWRFG 294 (360)
Q Consensus 226 i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~~~GG~f~l----f-~---G~v~G--~~~el~-p~~rIv~tWr~~ 294 (360)
|+.+..++|||++||++|+||+.+..|...-..+....++.|.. - + +.+.| ++.+++ |++++.++++-.
T Consensus 1 ~~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 80 (146)
T cd07823 1 LENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEYKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEATGK 80 (146)
T ss_pred CCceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeEEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEEe
Confidence 34577899999999999999999999986432222222355542 1 1 22333 456777 899999887643
Q ss_pred CCCC-CC-eeEEEEEEEeCCCCeEEEEEEEeecCCcc--cccCchhhHHHHhhhHHHHHHHHHHhh
Q 018146 295 SWPD-GI-ESTVRLVFDEPEPGVTVVKLTHNDVPEED--RYGNATVVENTERGWRDLIFQRIRAVF 356 (360)
Q Consensus 295 ~wp~-~~-~S~Vtitf~~~~~g~T~L~l~~~gvp~~~--~~~~~~~~e~~~~GW~~~~~~~Ik~~f 356 (360)
+-+. +. ...++++|.+. +++|+|++....-..+. .++...+....+.-.+ .+++.|+..+
T Consensus 81 ~~~~~g~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~-~~~~~l~~~~ 144 (146)
T cd07823 81 DARGQGTAEATVTLRLSPA-GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLA-QFAANLEARL 144 (146)
T ss_pred cCCCcceEEEEEEEEEEec-CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHH-HHHHHHHHHh
Confidence 2111 12 35678888884 48899999985433332 1222223344444454 4777777654
No 30
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.52 E-value=3.1e-06 Score=68.80 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=75.2
Q ss_pred EEEEEEcCCHHHHHHHhcChhhHhcccCCCcceee------ecCeEEEEE-c-C---eEEEEEEEEecCCEEEEEEEeCC
Q 018146 227 SLSEKFSCRAKDLYEILMDENRWKGFTQSNARISK------EVNGEISIF-D-G---SVTGKNLELQEGKLIVQKWRFGS 295 (360)
Q Consensus 227 ~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~------~~GG~f~lf-~-G---~v~G~~~el~p~~rIv~tWr~~~ 295 (360)
..+..++||+++||++|+|++.+.+|+........ ..|+.+.+. . + ...+++..+.|+.++.++|...+
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 81 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVTEVDPPRPGRFRVTGGG 81 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCccccceEEEEEecCCCceEEEEecCC
Confidence 46788999999999999999999999865433332 333444432 1 2 46889999999999999998643
Q ss_pred CCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCcc
Q 018146 296 WPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEED 329 (360)
Q Consensus 296 wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~ 329 (360)
.+ .....++.|++.++++|+|++.++.-+...
T Consensus 82 ~~--~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~ 113 (141)
T cd07812 82 GG--VDGTGEWRLEPEGDGGTRVTYTVEYDPPGP 113 (141)
T ss_pred CC--cceeEEEEEEECCCCcEEEEEEEEEecCCc
Confidence 32 356788999997633899999999876653
No 31
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=98.50 E-value=9.6e-06 Score=67.77 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=83.2
Q ss_pred eeEEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceeeec-CeEE-----EEEc-CeEEEEEEEEec-CCEEEEEEEeCC
Q 018146 224 KNISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISKEV-NGEI-----SIFD-GSVTGKNLELQE-GKLIVQKWRFGS 295 (360)
Q Consensus 224 ~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~~~-GG~f-----~lf~-G~v~G~~~el~p-~~rIv~tWr~~~ 295 (360)
.+++.+..++|||++||++|+|++.+.+|...-..+++.. ||.+ ...+ +.+.-++++.+| ++.|. |++..
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~--~~~~~ 79 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVAGRGTVREEITEYDPEPRRIT--WRFVP 79 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEECSCSEEEEEEEEEETTTTEEE--EEEES
T ss_pred EEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEeccccceeEEEEEecCCCcEEE--EEEEe
Confidence 4788999999999999999999999999987655554433 4443 2224 468999999999 88885 45422
Q ss_pred CCCCCeeEEEEEEEeCCCCeEEEEEEEeecC-CcccccCchhhHHHHhhhHHHHHHHHHHhh
Q 018146 296 WPDGIESTVRLVFDEPEPGVTVVKLTHNDVP-EEDRYGNATVVENTERGWRDLIFQRIRAVF 356 (360)
Q Consensus 296 wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp-~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~f 356 (360)
.+- .....+++|++.+ ++|+|+.+..--+ ....+........++...+ ..++.||+.+
T Consensus 80 ~~~-~~~~~~~~~~~~~-~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~ 138 (139)
T PF10604_consen 80 SGF-TNGTGRWRFEPVG-DGTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVR-EALENLKRAA 138 (139)
T ss_dssp SSS-CEEEEEEEEEEET-TTEEEEEEEEEEESCTTSCHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cce-eEEEEEEEEEEcC-CCEEEEEEEEEEEeccchhhHHHHHHHHHHHHH-HHHHHHhccc
Confidence 221 2357889999976 6799988875443 1111111111233344443 4678888765
No 32
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.03 E-value=0.00025 Score=59.37 Aligned_cols=99 Identities=8% Similarity=0.102 Sum_probs=62.7
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceee---ecCeEEEEE-----cCeEEEEEE-EE--ecCCEEEEEEEe
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISK---EVNGEISIF-----DGSVTGKNL-EL--QEGKLIVQKWRF 293 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~---~~GG~f~lf-----~G~v~G~~~-el--~p~~rIv~tWr~ 293 (360)
.++.+..++|||++||+.|+|++.+.+|+..-...+. ..+|..... .+.+..+++ ++ .++.+|. |+.
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~ 80 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYTWDGAGSVS--WTL 80 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEEEcCCCcEE--EEE
Confidence 5778889999999999999999999999875333333 123333221 223343432 33 3355664 444
Q ss_pred CCCCCCCeeEEEEEEEeCCCCeEEEEEEEeecC
Q 018146 294 GSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVP 326 (360)
Q Consensus 294 ~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp 326 (360)
.+.+.......+++|++.+ ++|+|++.+..-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~t~vt~~~~~~~ 112 (140)
T cd07819 81 VEGEGNRSQEGSYTLTPKG-DGTRVTFDLTVEL 112 (140)
T ss_pred ecccceeEEEEEEEEEECC-CCEEEEEEEEEEe
Confidence 3322222345789999976 6899999986544
No 33
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.83 E-value=0.00089 Score=56.61 Aligned_cols=128 Identities=23% Similarity=0.281 Sum_probs=75.3
Q ss_pred EEEEEEcCCHHHHHHHhcChhhHhcccCC--CcceeeecCe-EEEEE----cCeEEE--EEEEEec-CCEEEEEEEeCCC
Q 018146 227 SLSEKFSCRAKDLYEILMDENRWKGFTQS--NARISKEVNG-EISIF----DGSVTG--KNLELQE-GKLIVQKWRFGSW 296 (360)
Q Consensus 227 ~~~~~f~ap~e~v~~alTdpe~l~~W~~~--~~~~d~~~GG-~f~lf----~G~v~G--~~~el~p-~~rIv~tWr~~~w 296 (360)
+.+..|+||+++||+.|+|.+.+..|... ...++...++ .+..+ .|.... ....+.| +++|.+...-...
T Consensus 2 ~~s~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (142)
T cd08861 2 EHSVTVAAPAEDVYDLLADAERWPEFLPTVHVERLELDGGVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQEEPPP 81 (142)
T ss_pred eEEEEEcCCHHHHHHHHHhHHhhhccCCCceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEEeeCCC
Confidence 45788999999999999999999999874 2223333344 34422 232211 2235677 8888665432111
Q ss_pred CCCCeeEEEEEEEeCCCCeEEEEEEEeecCCccc-ccCchhhHHHHhhhHHHHHHHHHHhh
Q 018146 297 PDGIESTVRLVFDEPEPGVTVVKLTHNDVPEEDR-YGNATVVENTERGWRDLIFQRIRAVF 356 (360)
Q Consensus 297 p~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~~-~~~~~~~e~~~~GW~~~~~~~Ik~~f 356 (360)
+ -....-+++|++.++++|+|++....-+.... .....+...++..-.. .+.+||+..
T Consensus 82 ~-~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lk~~~ 140 (142)
T cd08861 82 P-VASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRA-ELAALRAAA 140 (142)
T ss_pred C-hhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHH-HHHHHHHHh
Confidence 1 11334578999875478999999886655431 1111123344444443 567777654
No 34
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.77 E-value=0.0006 Score=57.94 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=65.3
Q ss_pred EEEEEEcCCHHHHHHHhcChhhHhcccCCCcceee--------ecCeEEEEE---cC---eEEEEEEEEecCCEEEEEEE
Q 018146 227 SLSEKFSCRAKDLYEILMDENRWKGFTQSNARISK--------EVNGEISIF---DG---SVTGKNLELQEGKLIVQKWR 292 (360)
Q Consensus 227 ~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~--------~~GG~f~lf---~G---~v~G~~~el~p~~rIv~tWr 292 (360)
+.+..|+||+++||+.++|++.+..|+..-..+.. .+|..+.+- .| ....++++++|++++ .|+
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p~~~f--~~~ 79 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEPPRRF--VDE 79 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcCCCeE--EEE
Confidence 56778999999999999999999999875333322 334555542 23 346667899999986 555
Q ss_pred eCCCCCCCeeEEEEEEEeCCCCeEEEEEEEeec
Q 018146 293 FGSWPDGIESTVRLVFDEPEPGVTVVKLTHNDV 325 (360)
Q Consensus 293 ~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gv 325 (360)
....|- ....-+.+|++.+ ++|+|+...+--
T Consensus 80 ~~~G~~-~~w~h~~~f~~~~-~gT~vt~~v~~~ 110 (137)
T cd07820 80 QVSGPF-RSWRHTHRFEAIG-GGTLMTDRVEYR 110 (137)
T ss_pred eccCCc-hhCEEEEEEEECC-CceEEEEEEEEe
Confidence 444332 1234567888865 689999887643
No 35
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=97.54 E-value=0.0042 Score=53.37 Aligned_cols=127 Identities=12% Similarity=0.127 Sum_probs=72.6
Q ss_pred EEEEcCCHHHHHHHhcChhhHhcccCCCcceeeecCeEEEEE----cC----e--EEEEEEEEecCCEEEEEEEeCCCCC
Q 018146 229 SEKFSCRAKDLYEILMDENRWKGFTQSNARISKEVNGEISIF----DG----S--VTGKNLELQEGKLIVQKWRFGSWPD 298 (360)
Q Consensus 229 ~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~~~GG~f~lf----~G----~--v~G~~~el~p~~rIv~tWr~~~wp~ 298 (360)
+.++++|+++||++|+||+.+..-... ++.--..|++|..- -| . ...++.+++|+++..+.-.-.+-..
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG-~~~~e~~~~~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~~~~~g~g~~~ 80 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPG-VESIEKVGDEYKGKVKVKVGPIKGTFDGEVRITEIDPPESYTLEFEGRGRGG 80 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTT-EEEEEEECTEEEEEEEEESCCCEEEEEEEEEEEEEETTTEEEEEEEEEECTC
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCC-cEEeeecCcEEEEEEEEEeccEEEEEEEEEEEEEcCCCcceEeeeeccCCcc
Confidence 457899999999999999999988754 33333455888752 12 2 3556689999998654444333222
Q ss_pred CCeeEEEEEEEeCCCCeEEEEEEEeecCCcc--cccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 299 GIESTVRLVFDEPEPGVTVVKLTHNDVPEED--RYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 299 ~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~~--~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
+......+++...++++|+|+..-..--.+. .+|+.. .+.+-.-.-+.++++|+..+|
T Consensus 81 ~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~-i~~~~~~l~~~f~~~l~~~l~ 140 (140)
T PF06240_consen 81 GSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRL-IESVARRLIEQFFENLERKLS 140 (140)
T ss_dssp CEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 2222334444443334599888765322221 234332 333334444467888877654
No 36
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.13 E-value=0.022 Score=49.43 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=76.0
Q ss_pred EEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceee------ecCeEEEE-E--cCeEEEEEE---EEecCC-EEEEEEE
Q 018146 226 ISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISK------EVNGEISI-F--DGSVTGKNL---ELQEGK-LIVQKWR 292 (360)
Q Consensus 226 i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~------~~GG~f~l-f--~G~v~G~~~---el~p~~-rIv~tWr 292 (360)
...+..++|||++||+.+.|.+.+..|+..-...+. .+|.++.+ + +|. .-.+. .+.++. +|.+. .
T Consensus 3 ~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~-~~~w~s~~~~~~~~~~i~~~-~ 80 (146)
T cd08860 3 TDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGT-VWSWVSERTLDPVNRTVRAR-R 80 (146)
T ss_pred ceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCE-EEEEEEEEEecCCCcEEEEE-E
Confidence 356788999999999999999999999975433322 22334443 2 333 23332 234443 35544 3
Q ss_pred eCCCCCCCeeEEEEEEEeCCCCeEEEEEEEee-cCCcccccCchhhHHHHhhhHHHHHHHHHHhhc
Q 018146 293 FGSWPDGIESTVRLVFDEPEPGVTVVKLTHND-VPEEDRYGNATVVENTERGWRDLIFQRIRAVFG 357 (360)
Q Consensus 293 ~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~g-vp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fg 357 (360)
..+-| -.+...+++|++.+ ++|+|++.|.- ++.+.......+......+-.. .++.||+...
T Consensus 81 ~~~~p-~~~m~~~W~f~~~~-~gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~Lk~~aE 143 (146)
T cd08860 81 VETGP-FAYMNIRWEYTEVP-EGTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRA-QMARIKKKIE 143 (146)
T ss_pred ecCCC-cceeeeeEEEEECC-CCEEEEEEEEEEECCCCccchHHHHHHHhcccHH-HHHHHHHHhh
Confidence 34422 34667788999975 66999999862 2222211111234556666664 6777877643
No 37
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=97.11 E-value=0.0094 Score=50.30 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=64.3
Q ss_pred EEEEEEcCCHHHHHHHhcChhhHhcccCCCcceee--ecCeEEE--E---EcC---eEEEEEEEEecCCEEEEEEEeCCC
Q 018146 227 SLSEKFSCRAKDLYEILMDENRWKGFTQSNARISK--EVNGEIS--I---FDG---SVTGKNLELQEGKLIVQKWRFGSW 296 (360)
Q Consensus 227 ~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~--~~GG~f~--l---f~G---~v~G~~~el~p~~rIv~tWr~~~w 296 (360)
+.+..++||++.||+.++|.+.+..|+..-..... +.+..+. + +.| ....+ +.+.|+++| +|+..+-
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i--~~~~~~g 78 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGGIRESFTSR-VTLVPPESI--EAELVDG 78 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeeccccEEEEEE-EEecCCCEE--EEEecCC
Confidence 45778999999999999999999999974333222 2222221 1 222 12222 357888887 6765432
Q ss_pred CCCCeeEEEEEEEeCCCCeEEEEEEEeecCCc
Q 018146 297 PDGIESTVRLVFDEPEPGVTVVKLTHNDVPEE 328 (360)
Q Consensus 297 p~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~ 328 (360)
+- ....-+++|++.++|+|+|++...--|.+
T Consensus 79 ~~-~~~~g~w~~~p~~~~~T~v~~~~~~~~~~ 109 (138)
T cd07813 79 PF-KHLEGEWRFKPLGENACKVEFDLEFEFKS 109 (138)
T ss_pred Ch-hhceeEEEEEECCCCCEEEEEEEEEEECC
Confidence 21 12456799999766889999998865553
No 38
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=97.10 E-value=0.023 Score=49.55 Aligned_cols=126 Identities=11% Similarity=0.114 Sum_probs=77.3
Q ss_pred EEEEEcCCHHHHHHHhcChhhHhcccCCCcceeeecCeEEEEE--------cCeEEEEE--EE-EecCCEEEEEEEeCCC
Q 018146 228 LSEKFSCRAKDLYEILMDENRWKGFTQSNARISKEVNGEISIF--------DGSVTGKN--LE-LQEGKLIVQKWRFGSW 296 (360)
Q Consensus 228 ~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~~~GG~f~lf--------~G~v~G~~--~e-l~p~~rIv~tWr~~~w 296 (360)
=+..+++||++||++|+||+.+++-+..--.++ +.|..|..- .+.+.|++ .. .+|+..+... ...-
T Consensus 5 G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e-~~g~e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~--g~G~ 81 (146)
T COG3427 5 GTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVE-TNGDEYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITIN--GSGG 81 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhhcCCcceee-ecCCeEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEE--eecc
Confidence 356789999999999999999999875322233 456666642 23455544 45 5567666543 3220
Q ss_pred -CCC-CeeEEEEEEEeCCCCeEEEEEEEeecCC--cccccCchhhHHHHhhhHHHHHHHHHHhhcc
Q 018146 297 -PDG-IESTVRLVFDEPEPGVTVVKLTHNDVPE--EDRYGNATVVENTERGWRDLIFQRIRAVFGF 358 (360)
Q Consensus 297 -p~~-~~S~Vtitf~~~~~g~T~L~l~~~gvp~--~~~~~~~~~~e~~~~GW~~~~~~~Ik~~fgf 358 (360)
-.+ ...++.+.+++.+ .+|+|.-.-.+=-- -..+|........+..=+ .+|++|+..++.
T Consensus 82 ~~~g~~~~~~~v~l~~~g-~gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~-~~~~~l~~~l~~ 145 (146)
T COG3427 82 GAAGFADGTVDVQLEPSG-EGTRVNWFADANVGGKLAQLGSRLIDSVARKLIN-RFFDCLSSELAA 145 (146)
T ss_pred cccceeeeeeEEEEEEcC-CCcEEEEEEEccccHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 001 2467889999876 56998877542111 112444444445555554 588999888764
No 39
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.05 E-value=0.044 Score=46.23 Aligned_cols=99 Identities=9% Similarity=0.031 Sum_probs=59.9
Q ss_pred EEEEEEcCCHHHHHHHhcChhhHhcccCCCccee--eecCeEEEE--------EcCeEEEEE----EEEec-CCEEEEEE
Q 018146 227 SLSEKFSCRAKDLYEILMDENRWKGFTQSNARIS--KEVNGEISI--------FDGSVTGKN----LELQE-GKLIVQKW 291 (360)
Q Consensus 227 ~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d--~~~GG~f~l--------f~G~v~G~~----~el~p-~~rIv~tW 291 (360)
..+..++|||++||+.|+|.+.+..|+..-.... .+.|+...+ +.....+.+ .+..+ +++|.++.
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~ 81 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFEM 81 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEEE
Confidence 3567899999999999999999999986433322 222332221 111122333 23332 67776654
Q ss_pred EeCCCCCCCeeEEEEEEEeCCC-CeEEEEEEEeecCCc
Q 018146 292 RFGSWPDGIESTVRLVFDEPEP-GVTVVKLTHNDVPEE 328 (360)
Q Consensus 292 r~~~wp~~~~S~Vtitf~~~~~-g~T~L~l~~~gvp~~ 328 (360)
- +.+- ....-+++|++.++ ++|+|+....--|..
T Consensus 82 ~--~g~~-~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~ 116 (144)
T cd08866 82 V--EGDF-KRFEGSWRLEPLADGGGTLLTYEVEVKPDF 116 (144)
T ss_pred c--CCch-hceEEEEEEEECCCCCeEEEEEEEEEEeCC
Confidence 3 3221 23456789998764 589988887654543
No 40
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=96.81 E-value=0.081 Score=45.84 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=64.4
Q ss_pred eEEEEEEEcCCHHHHHHHhcChh-hH-hcccCCCcceeeecC----eEEEE--E-cC----eEEEEEEEEec-CCEEEEE
Q 018146 225 NISLSEKFSCRAKDLYEILMDEN-RW-KGFTQSNARISKEVN----GEISI--F-DG----SVTGKNLELQE-GKLIVQK 290 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe-~l-~~W~~~~~~~d~~~G----G~f~l--f-~G----~v~G~~~el~p-~~rIv~t 290 (360)
+++.+..++||+++||+++.+.. .+ ..|...-...+...| |..+. | .| .+.=++..+++ +++| +
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~--~ 79 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY--K 79 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE--E
Confidence 57889999999999999999999 45 445432223333333 34443 3 33 35667778888 5555 5
Q ss_pred EEeCCCCCC--Cee--EEEEEEEeCCCCeEEEEEEEeecCCc
Q 018146 291 WRFGSWPDG--IES--TVRLVFDEPEPGVTVVKLTHNDVPEE 328 (360)
Q Consensus 291 Wr~~~wp~~--~~S--~Vtitf~~~~~g~T~L~l~~~gvp~~ 328 (360)
|++-+-+.. .+. ..+|+|.+.++++|.+..+-+--|..
T Consensus 80 y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~ 121 (148)
T cd07816 80 YTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKG 121 (148)
T ss_pred EEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECC
Confidence 555332211 233 46888888755789888887755443
No 41
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=96.31 E-value=0.041 Score=49.35 Aligned_cols=103 Identities=14% Similarity=0.127 Sum_probs=68.1
Q ss_pred ceeeEEEEEEEcCCHHHHHHHhcChhhHhcccC--CCcce-eeecCeEEEEE---cCeE--EEEEEEEecCCEEEEEEEe
Q 018146 222 GFKNISLSEKFSCRAKDLYEILMDENRWKGFTQ--SNARI-SKEVNGEISIF---DGSV--TGKNLELQEGKLIVQKWRF 293 (360)
Q Consensus 222 ~t~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~--~~~~~-d~~~GG~f~lf---~G~v--~G~~~el~p~~rIv~tWr~ 293 (360)
+-..+..+.++++|+++||+.|.|=+.+..|+. .++++ |-.+ .++.+- ++.+ ..++++..|+++| .|+-
T Consensus 68 ~~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr-SrW~~~ap~g~~v~Wea~it~d~~~e~I--~W~S 144 (217)
T COG5637 68 KPIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR-SRWKANAPLGLEVEWEAEITKDIPGERI--QWES 144 (217)
T ss_pred CceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc-cceeEcCCCCceEEEeehhhccCCCcEE--eeec
Confidence 445677889999999999999999999999874 22222 2111 344331 1222 5688999999999 7875
Q ss_pred CCCCCCCeeEEEEEEEeCCCCeEEEEEEEeecCCc
Q 018146 294 GSWPDGIESTVRLVFDEPEPGVTVVKLTHNDVPEE 328 (360)
Q Consensus 294 ~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~ 328 (360)
-+... ....=.+.|.+..++.|++.++-+--|.+
T Consensus 145 l~Ga~-v~NsG~VrF~~~pg~~t~V~v~lsY~~Pg 178 (217)
T COG5637 145 LPGAR-VENSGAVRFYDAPGDSTEVKVTLSYRPPG 178 (217)
T ss_pred CCCCc-CCCCccEEeeeCCCCceEEEEEEEecCCc
Confidence 43211 11112367777666789999998865554
No 42
>PRK10724 hypothetical protein; Provisional
Probab=96.04 E-value=0.1 Score=46.08 Aligned_cols=98 Identities=13% Similarity=0.199 Sum_probs=66.1
Q ss_pred ceeeEEEEEEEcCCHHHHHHHhcChhhHhcccCCC--cceeeecCeEE-EE----EcCeEEEEE---EEEecCCEEEEEE
Q 018146 222 GFKNISLSEKFSCRAKDLYEILMDENRWKGFTQSN--ARISKEVNGEI-SI----FDGSVTGKN---LELQEGKLIVQKW 291 (360)
Q Consensus 222 ~t~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~--~~~d~~~GG~f-~l----f~G~v~G~~---~el~p~~rIv~tW 291 (360)
.+..+.-++.+++|+++||+.+.|-+...+|...- +++--+.++.. .. |+| +..+| +.+.|+++|.+
T Consensus 13 ~M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g-~~~~f~srv~~~~~~~I~~-- 89 (158)
T PRK10724 13 VMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAG-ISKTFTTRNQLTSNQSILM-- 89 (158)
T ss_pred cCCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCC-ccEEEEEEEEecCCCEEEE--
Confidence 45678889999999999999999999999998632 23322323322 21 244 34444 56788988855
Q ss_pred EeCCCCCCCeeEEEEEEEeCCCCeEEEEEEEe
Q 018146 292 RFGSWPDGIESTVRLVFDEPEPGVTVVKLTHN 323 (360)
Q Consensus 292 r~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~ 323 (360)
.+.+.|-. .-.-.|+|++.++++|+|++.+.
T Consensus 90 ~~~~GpF~-~l~g~W~f~p~~~~~t~V~~~l~ 120 (158)
T PRK10724 90 QLVDGPFK-KLIGGWKFTPLSQEACRIEFHLD 120 (158)
T ss_pred EecCCChh-hccceEEEEECCCCCEEEEEEEE
Confidence 55443321 22345999997656799999987
No 43
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=94.09 E-value=1.6 Score=35.96 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=49.4
Q ss_pred EcCCHHHHHHHhcChhhHhcccCCC--cceeeecCeEE----EEEc-C---eEEEEEEEEecCCEEEEEEEeCCCCCCCe
Q 018146 232 FSCRAKDLYEILMDENRWKGFTQSN--ARISKEVNGEI----SIFD-G---SVTGKNLELQEGKLIVQKWRFGSWPDGIE 301 (360)
Q Consensus 232 f~ap~e~v~~alTdpe~l~~W~~~~--~~~d~~~GG~f----~lf~-G---~v~G~~~el~p~~rIv~tWr~~~wp~~~~ 301 (360)
++||+++||+.|+|.+.+.+|+..- +++--+.++.+ .+.. + ...-++.+..+.. |.+. ....|- ..
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~g~~-~~ 76 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGGIKRSWTSRVTEDPPER-IRFE--QISGPF-KS 76 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTTTCEEEEEEEEEECTTT-EEEE--SSETTE-EE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCCEEEEEEEEEEEEEeee-eeee--ecCCCc-hh
Confidence 5799999999999999999998642 23323444332 2221 2 2344445545544 4432 222111 13
Q ss_pred eEEEEEEEeCCCC---eEEEEEEEe
Q 018146 302 STVRLVFDEPEPG---VTVVKLTHN 323 (360)
Q Consensus 302 S~Vtitf~~~~~g---~T~L~l~~~ 323 (360)
-.-+++|.+.+ + +|.+.++++
T Consensus 77 ~~g~W~~~~~~-~~~~g~~~~v~~~ 100 (130)
T PF03364_consen 77 FEGSWRFEPLG-GNEGGTRTRVTYD 100 (130)
T ss_dssp EEEEEEEEEET-TECCEEEEEEEEE
T ss_pred cEEEEEEEECC-CCcCCCEEEEEEE
Confidence 35678998865 4 666555554
No 44
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=93.14 E-value=3.5 Score=34.62 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=71.0
Q ss_pred EEEEEEcCCHHHHHHHhcChhh--HhcccCCCcce-eeecCeEEEE-Ec-C-eEEEEEEEEecCCEEEEEEEeCCCCCCC
Q 018146 227 SLSEKFSCRAKDLYEILMDENR--WKGFTQSNARI-SKEVNGEISI-FD-G-SVTGKNLELQEGKLIVQKWRFGSWPDGI 300 (360)
Q Consensus 227 ~~~~~f~ap~e~v~~alTdpe~--l~~W~~~~~~~-d~~~GG~f~l-f~-G-~v~G~~~el~p~~rIv~tWr~~~wp~~~ 300 (360)
.+++.+++|++++|+.|.+.-. +.+-++..... ++ .|=+|.- ++ + .++-++.+++||++-.++-.- +.+
T Consensus 2 kI~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L-~G~~Y~K~~~~~~~~~v~It~~~~~~~Y~~~~~s---~~~- 76 (120)
T PF11687_consen 2 KISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQL-KGFSYQKKFKNKREAKVKITEYEPNKRYAATFSS---SRG- 76 (120)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhc-CCcEEEEEcCCCCEEEEEEEEEcCCCEEEEEEEe---cCC-
Confidence 5788999999999999998754 34455543322 35 7778874 32 2 567789999999998877654 223
Q ss_pred eeEEEEEEEeCCCCeEEEEEEEeecCCc
Q 018146 301 ESTVRLVFDEPEPGVTVVKLTHNDVPEE 328 (360)
Q Consensus 301 ~S~Vtitf~~~~~g~T~L~l~~~gvp~~ 328 (360)
.-+++..|++.+++.|+|+..+.-.+.+
T Consensus 77 ~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 77 TFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred CEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 3578999999876779999998765543
No 45
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=87.94 E-value=17 Score=31.60 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=61.6
Q ss_pred eeeEEEEEEEcCCHHHHHHHhcC-hhhHhcccCCC------cceeeecCeEEEEE----cCe---EEEEEEEEecC-CEE
Q 018146 223 FKNISLSEKFSCRAKDLYEILMD-ENRWKGFTQSN------ARISKEVNGEISIF----DGS---VTGKNLELQEG-KLI 287 (360)
Q Consensus 223 t~~i~~~~~f~ap~e~v~~alTd-pe~l~~W~~~~------~~~d~~~GG~f~lf----~G~---v~G~~~el~p~-~rI 287 (360)
..++..+...++||+++|++|.+ +..+..=+... .+.|..+||..+.+ +|. +.=++..++.. +.+
T Consensus 3 ~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~ 82 (151)
T PF00407_consen 3 VGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTI 82 (151)
T ss_dssp EEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEE
T ss_pred cEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEE
Confidence 35788899999999999999995 44444433222 12345677787764 342 45667777777 555
Q ss_pred EEEEEeCCC-CCCCeeEEEEEEEeCCCCeEEEEEEEeecCCc
Q 018146 288 VQKWRFGSW-PDGIESTVRLVFDEPEPGVTVVKLTHNDVPEE 328 (360)
Q Consensus 288 v~tWr~~~w-p~~~~S~Vtitf~~~~~g~T~L~l~~~gvp~~ 328 (360)
.++---.+. ..-....+++.+.+.++|+|.++.+-.--+.+
T Consensus 83 ~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~ 124 (151)
T PF00407_consen 83 TYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKG 124 (151)
T ss_dssp EEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESS
T ss_pred EEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecC
Confidence 554322232 21123445566555555668777776644443
No 46
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=77.94 E-value=20 Score=33.81 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=29.4
Q ss_pred ceeeEEEEEEEcCCHHHHHHHhcChhhHhcccC
Q 018146 222 GFKNISLSEKFSCRAKDLYEILMDENRWKGFTQ 254 (360)
Q Consensus 222 ~t~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~ 254 (360)
+...+..+..+++|++.||+.|.|++.-..|-.
T Consensus 79 ~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~ 111 (240)
T cd08913 79 KFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDK 111 (240)
T ss_pred CccEEEEEEEEcCCHHHHHHHHhChhhhhhhHh
Confidence 346778888999999999999999999999975
No 47
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=73.68 E-value=64 Score=28.50 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=61.6
Q ss_pred eeEEEEEEEcCCHHHHHHHhcChhhHhcccCCC--cceeeecCe-EE-EE--Ec--CeEEEE-E-----EEEec-CCEEE
Q 018146 224 KNISLSEKFSCRAKDLYEILMDENRWKGFTQSN--ARISKEVNG-EI-SI--FD--GSVTGK-N-----LELQE-GKLIV 288 (360)
Q Consensus 224 ~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~--~~~d~~~GG-~f-~l--f~--G~v~G~-~-----~el~p-~~rIv 288 (360)
..+..+..+++||++||+.+.|.+....|...- +++--+.|. .. .+ +. ..+.++ | ..... +..++
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~ 120 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVT 120 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEE
Confidence 678888899999999999999999999997532 222112222 11 11 11 101111 1 11122 56788
Q ss_pred EEEEeCC--CCCC------CeeEEEEEEEeCCCCeEEEEEEEeecCCc
Q 018146 289 QKWRFGS--WPDG------IESTVRLVFDEPEPGVTVVKLTHNDVPEE 328 (360)
Q Consensus 289 ~tWr~~~--wp~~------~~S~Vtitf~~~~~g~T~L~l~~~gvp~~ 328 (360)
+.|+..+ .|.. ..-.-.+.|++.++++|+|++...--|.+
T Consensus 121 i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g 168 (195)
T cd08876 121 ITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGG 168 (195)
T ss_pred EEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCC
Confidence 8887432 2421 11123478888766789999887655544
No 48
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=73.19 E-value=2.9 Score=36.64 Aligned_cols=26 Identities=15% Similarity=0.488 Sum_probs=22.8
Q ss_pred EEEEEEEcCCHHHHHHHhcChhhHhc
Q 018146 226 ISLSEKFSCRAKDLYEILMDENRWKG 251 (360)
Q Consensus 226 i~~~~~f~ap~e~v~~alTdpe~l~~ 251 (360)
+.++..|++|+++||++|+|++.+..
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~ 26 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEA 26 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHH
Confidence 46788999999999999999988754
No 49
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=68.50 E-value=81 Score=27.54 Aligned_cols=113 Identities=16% Similarity=0.223 Sum_probs=65.5
Q ss_pred CCHHHHHHHhcChhhHhcccCC---CcceeeecCeEEE---EEcCeEEEEEEEEecCCEEEEEEEeCCCCCCCeeEEEEE
Q 018146 234 CRAKDLYEILMDENRWKGFTQS---NARISKEVNGEIS---IFDGSVTGKNLELQEGKLIVQKWRFGSWPDGIESTVRLV 307 (360)
Q Consensus 234 ap~e~v~~alTdpe~l~~W~~~---~~~~d~~~GG~f~---lf~G~v~G~~~el~p~~rIv~tWr~~~wp~~~~S~Vtit 307 (360)
.++++||+-|...-+=.+=|-+ .|++-.+.++.|. .|++..-=+.+.+.|+.++.| .....|.+++.
T Consensus 18 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~fg~~~v~E~v~~~~~~~V~f-------~~~~Gs~lt~~ 90 (149)
T PF08982_consen 18 LTREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTFGGATVRERVTLYPPERVDF-------AQHDGSSLTNI 90 (149)
T ss_dssp --HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEETTEEEEEEEEEETTTEEEE-------SSSBEEEEEEE
T ss_pred cCHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEECCcEEEEEEEEeCCcEEEE-------EcCCCCEEEEE
Confidence 4689999999877766654432 3555556677775 377777777888999999987 12346899999
Q ss_pred EEeCCCCeEEEEEEEe-ecCCcccccC--chhhHHHHhhhHHHHHHHHH
Q 018146 308 FDEPEPGVTVVKLTHN-DVPEEDRYGN--ATVVENTERGWRDLIFQRIR 353 (360)
Q Consensus 308 f~~~~~g~T~L~l~~~-gvp~~~~~~~--~~~~e~~~~GW~~~~~~~Ik 353 (360)
+++.+++.=.|++... ++|..++-+. ....+.++..|+......|+
T Consensus 91 I~e~~~g~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~ 139 (149)
T PF08982_consen 91 ISEPEPGDLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIR 139 (149)
T ss_dssp EEEEETTEEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986545555555543 3442211000 11235566666655555444
No 50
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=66.09 E-value=77 Score=29.92 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=29.1
Q ss_pred eeeEEEEEEEcCCHHHHHHHhcChhhHhcccC
Q 018146 223 FKNISLSEKFSCRAKDLYEILMDENRWKGFTQ 254 (360)
Q Consensus 223 t~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~ 254 (360)
...+..+..+++|++.||+.|.|.+.-..|-.
T Consensus 77 ~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~ 108 (236)
T cd08914 77 VLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDP 108 (236)
T ss_pred cEEEEEEEEEcCCHHHHHHHHhChhhhchhHH
Confidence 46788888999999999999999999999964
No 51
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=63.12 E-value=1e+02 Score=26.77 Aligned_cols=113 Identities=11% Similarity=0.083 Sum_probs=66.9
Q ss_pred eEEEEEEEcCCHHHHHHHhcChhhHhcccCCCcc-----eeeecCeEEEEEc-------C-eEEEEEEE--EecCCEEEE
Q 018146 225 NISLSEKFSCRAKDLYEILMDENRWKGFTQSNAR-----ISKEVNGEISIFD-------G-SVTGKNLE--LQEGKLIVQ 289 (360)
Q Consensus 225 ~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~-----~d~~~GG~f~lf~-------G-~v~G~~~e--l~p~~rIv~ 289 (360)
++..+-+++||.|.||+..+.|+.|++-+..... .+...|.++.++- | .-..++.+ .+++.+.+-
T Consensus 3 tF~~~~~i~aP~E~VWafhsrpd~lq~LTppw~VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~~~FtD 82 (153)
T COG4276 3 TFVYRTTITAPHEMVWAFHSRPDALQRLTPPWIVVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNGSRFTD 82 (153)
T ss_pred ceEEeeEecCCHHHHhhhhcCccHHHhcCCCcEEeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCcceeee
Confidence 5667788999999999999999999998764431 1345566776631 1 12344444 566666543
Q ss_pred EEEeCCCCCCCeeEEEEEEEeCCCCeEEEEEEEee-cCCcccccCchhhHHHHhhhHH
Q 018146 290 KWRFGSWPDGIESTVRLVFDEPEPGVTVVKLTHND-VPEEDRYGNATVVENTERGWRD 346 (360)
Q Consensus 290 tWr~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~g-vp~~~~~~~~~~~e~~~~GW~~ 346 (360)
+---...|. .+-+-+=.|.+.+ |+|.|.=.-+- +|.+. .-++-.+|..
T Consensus 83 v~i~gPfp~-~~WrHtH~F~~eg-g~TvliD~Vsye~p~g~-------~~~~~g~~l~ 131 (153)
T COG4276 83 VCITGPFPA-LNWRHTHNFVDEG-GGTVLIDSVSYELPAGT-------LTGMFGYRLT 131 (153)
T ss_pred eeecCCccc-eeeEEEeeeecCC-CcEEEEeeEEeeccCcc-------eechhhhhhH
Confidence 321111221 1233445787754 88988765443 45554 3444555543
No 52
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=60.27 E-value=55 Score=29.96 Aligned_cols=31 Identities=16% Similarity=0.412 Sum_probs=27.6
Q ss_pred eeEEEEEEEcCCHHHHHH-HhcChhhHhcccC
Q 018146 224 KNISLSEKFSCRAKDLYE-ILMDENRWKGFTQ 254 (360)
Q Consensus 224 ~~i~~~~~f~ap~e~v~~-alTdpe~l~~W~~ 254 (360)
..+..+..+.+|++.||. .|.|.+....|-.
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~ 80 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVILQPEKMVLWNK 80 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHHhChhhccccCc
Confidence 577889999999999995 6899999999975
No 53
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=56.19 E-value=93 Score=29.32 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=69.6
Q ss_pred ceeeEEEEEEEcCCHHHHHHHhcChhhHhcccCCCcceee--ecC---eEEEEE-cC--------eEE-EEEEEEecC-C
Q 018146 222 GFKNISLSEKFSCRAKDLYEILMDENRWKGFTQSNARISK--EVN---GEISIF-DG--------SVT-GKNLELQEG-K 285 (360)
Q Consensus 222 ~t~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~~~~~~d~--~~G---G~f~lf-~G--------~v~-G~~~el~p~-~ 285 (360)
+...+..+..+++|+++||+.|.|.+.-..|-..-...+. +.+ +-|+.. .. .|. -......+. .
T Consensus 75 ~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 75 GVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred CceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 4567888889999999999999999999999753222211 122 111111 11 011 111110111 1
Q ss_pred EEEEEEEeC---CCCC-CCeeEEE-----EEEEeCCCCeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHh
Q 018146 286 LIVQKWRFG---SWPD-GIESTVR-----LVFDEPEPGVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAV 355 (360)
Q Consensus 286 rIv~tWr~~---~wp~-~~~S~Vt-----itf~~~~~g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~ 355 (360)
.++...+-. .-|+ ..+-+++ +.|.+.+.++|+|+.....-|---.| ....-.||...|-+..+.+
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~-----~~~~~~~~~~~~~~~~~~~ 228 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSY-----VTCNLAGLSALYCRTFHCC 228 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccce-----eeecchhhhHHHHHHHHHH
Confidence 122222211 1122 1233332 77888766788888887655543332 4566789987766655543
No 54
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=49.17 E-value=25 Score=27.88 Aligned_cols=18 Identities=33% Similarity=0.724 Sum_probs=12.8
Q ss_pred eeEEEEcccccCCCCCCCcEEEEEE
Q 018146 106 VDGLVEIPYISDENADENPEIRVSV 130 (360)
Q Consensus 106 ~~G~i~ipe~s~e~~~dd~~~~v~~ 130 (360)
++|+|.| .+|.+.+++.+
T Consensus 47 v~G~l~V-------~~d~v~l~v~L 64 (87)
T PF09650_consen 47 VDGTLDV-------ADDHVRLEVKL 64 (87)
T ss_pred ceEEEEE-------cCCEEEEEEEc
Confidence 7899987 34556777765
No 55
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=47.30 E-value=1.9e+02 Score=25.03 Aligned_cols=94 Identities=10% Similarity=0.031 Sum_probs=58.2
Q ss_pred EEEEEEcCCHHHHHHHhcChhhHhcccCCC-cceeeecCeEEEEE---cC---eEEEEEEEEecCCEEEEEEEeCCCCCC
Q 018146 227 SLSEKFSCRAKDLYEILMDENRWKGFTQSN-ARISKEVNGEISIF---DG---SVTGKNLELQEGKLIVQKWRFGSWPDG 299 (360)
Q Consensus 227 ~~~~~f~ap~e~v~~alTdpe~l~~W~~~~-~~~d~~~GG~f~lf---~G---~v~G~~~el~p~~rIv~tWr~~~wp~~ 299 (360)
+++..-.-+++.|-..|.||.-+-.=..++ -.++ ..|+.|... ++ .+.|++. .-+..|.|...+...++.
T Consensus 4 ~~~i~t~H~~e~v~~ILSDP~F~lp~l~p~ik~v~-~~~~sF~~~g~~~~~~~~~~G~vy--~s~~~ItYvf~~~~g~~~ 80 (136)
T PF11485_consen 4 EIEIKTSHDIEVVLTILSDPEFVLPRLFPPIKSVK-VEENSFRAEGKFGGFPFEMKGNVY--VSSNEITYVFNLAGGGPN 80 (136)
T ss_dssp EEEEE-SS-HHHHHHHHT-HHHHHHHHSTTEEEEE--STTEEEEEEEETTEEEEEEEEEE--EETTEEEEEEE----ETT
T ss_pred EEEeccCCChHheEEEecCCccEecccCCceEEEE-ecCCEEEEEEEEeeEEEEEEEEEE--EccceEEEEEEeeccCCC
Confidence 344444668899999999999874433344 3455 778888864 33 3567665 555689999988776555
Q ss_pred CeeEEEEEEEeCCCCeEEEEEEEeecC
Q 018146 300 IESTVRLVFDEPEPGVTVVKLTHNDVP 326 (360)
Q Consensus 300 ~~S~Vtitf~~~~~g~T~L~l~~~gvp 326 (360)
..-.++|.++ + +.-.|.|.+.|.-
T Consensus 81 g~GkL~i~~~--~-~~i~l~~eyeg~~ 104 (136)
T PF11485_consen 81 GNGKLTIQLE--N-GKIKLIFEYEGWM 104 (136)
T ss_dssp EEEEEEEEEE--T-TEEEEEEEES-HH
T ss_pred CcEEEEEEec--C-CEEEEEEEcccch
Confidence 5667888883 3 6788888887753
No 56
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=46.16 E-value=34 Score=27.37 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=26.3
Q ss_pred eeEEEEcccccCCCCCCCcEEEEEEccCCcchhhHHHHHHhcChhHHHHHHHHHHHHHH
Q 018146 106 VDGLVEIPYISDENADENPEIRVSVKDEGPLGKRLKDAMWVKGKPVIEEKVKVYVEAMA 164 (360)
Q Consensus 106 ~~G~i~ipe~s~e~~~dd~~~~v~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~f~~~L~ 164 (360)
++|+|.| .+|.+.++|.+ .++.+.+.+.|...+.++...+.
T Consensus 50 v~G~l~V-------~~d~v~v~v~L-----------g~Ll~~f~~~Ie~~I~~~Ld~~l 90 (91)
T TIGR02610 50 VDGAVHL-------GPQSIRVTAEL-----------GMLLSAMSGTIKSEIERALDKAL 90 (91)
T ss_pred eeEEEEE-------cCCeEEEEEEh-----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899887 34567777775 34555556666666666666543
No 57
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=40.08 E-value=79 Score=28.86 Aligned_cols=131 Identities=8% Similarity=-0.013 Sum_probs=68.5
Q ss_pred eeEEEEEEEcCCHHHHHHHhc-ChhhHhcccCCCcceee--ecCe-E---EEEE----cC------eEEEEEEEEecCCE
Q 018146 224 KNISLSEKFSCRAKDLYEILM-DENRWKGFTQSNARISK--EVNG-E---ISIF----DG------SVTGKNLELQEGKL 286 (360)
Q Consensus 224 ~~i~~~~~f~ap~e~v~~alT-dpe~l~~W~~~~~~~d~--~~GG-~---f~lf----~G------~v~G~~~el~p~~r 286 (360)
..+..+-.+++|++.||++|. |.+....|-..-..+.. +.+. . |... .+ .|.=....-..+..
T Consensus 49 k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~ 128 (209)
T cd08905 49 KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTC 128 (209)
T ss_pred cEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcE
Confidence 677888999999999996665 66999999753211110 1111 1 1110 11 12111122223333
Q ss_pred EEEEEEeC--CCCCC-CeeEE-----EEEEEeCCC--CeEEEEEEEeecCCcccccCchhhHHHHhhhHHHHHHHHHHhh
Q 018146 287 IVQKWRFG--SWPDG-IESTV-----RLVFDEPEP--GVTVVKLTHNDVPEEDRYGNATVVENTERGWRDLIFQRIRAVF 356 (360)
Q Consensus 287 Iv~tWr~~--~wp~~-~~S~V-----titf~~~~~--g~T~L~l~~~gvp~~~~~~~~~~~e~~~~GW~~~~~~~Ik~~f 356 (360)
+....... .-|.. .+-++ -+.|.+.++ +.|+|+...-.-|.+. .+..+...+-..=.-.++..|++.+
T Consensus 129 ~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~--iP~~lvN~~~~~~~~~~~~~Lr~~~ 206 (209)
T cd08905 129 VLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW--LPKSIINQVLSQTQVDFANHLRQRM 206 (209)
T ss_pred EEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC--CCHHHHHHHhHHhHHHHHHHHHHHH
Confidence 33333221 12221 12222 266888653 6798888877677765 4444444443444445777777664
No 58
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=35.71 E-value=96 Score=27.14 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=56.1
Q ss_pred eeEEEEEEEcCCHHHHHHHhcChhhHhcccC--CCcceeeecCeEE--EE---EcCeEEEEE---EEEecCC-EEEEEEE
Q 018146 224 KNISLSEKFSCRAKDLYEILMDENRWKGFTQ--SNARISKEVNGEI--SI---FDGSVTGKN---LELQEGK-LIVQKWR 292 (360)
Q Consensus 224 ~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~--~~~~~d~~~GG~f--~l---f~G~v~G~~---~el~p~~-rIv~tWr 292 (360)
..+..+..++.+|+++|+...|-+...++.. ...++.-+-+-.- .+ |.| +.=+| +.+.|+. .|.++-
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~-i~e~F~Trv~~~~~~~~I~~~l- 79 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKG-IRETFTTRVTLKPTARSIDMKL- 79 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhh-eeeeeeeeeeecCchhhhhhhh-
Confidence 3577888999999999999999999998763 1111111111110 01 111 22222 3456666 565543
Q ss_pred eCCCCCCCeeEEEEEEEeCCCCeEEEEEEEe
Q 018146 293 FGSWPDGIESTVRLVFDEPEPGVTVVKLTHN 323 (360)
Q Consensus 293 ~~~wp~~~~S~Vtitf~~~~~g~T~L~l~~~ 323 (360)
.+.|= ++-.=+|.|.+.+++.|+|.|.-.
T Consensus 80 -~~GPF-k~L~~~W~F~pl~~~~ckV~f~ld 108 (146)
T COG2867 80 -IDGPF-KYLKGGWQFTPLSEDACKVEFFLD 108 (146)
T ss_pred -hcCCh-hhhcCceEEEECCCCceEEEEEEE
Confidence 23331 233345889886668999998865
No 59
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this C-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC aapears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 2OBD_A 1EWF_A 1BP1_A.
Probab=34.77 E-value=1.6e+02 Score=27.02 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=44.9
Q ss_pred EEeEEEEE--eecCeeeeEEEEEEEEEEEEEeeCCCCCceeeeeEEEEcccccCCCCCCCcEEEEEEccCC-----cchh
Q 018146 66 VEGEAYVN--VRKGKIIPGYELNVTVSWEGEAKDGDGGSLLKVDGLVEIPYISDENADENPEIRVSVKDEG-----PLGK 138 (360)
Q Consensus 66 v~Gda~v~--~RKGK~i~~yd~~i~l~w~g~~~~~~~~~~~~~~G~i~ipe~s~e~~~dd~~~~v~~~~~~-----~~~~ 138 (360)
+.+++.+. ...++...+|.+++.+.-.++..= +++ .+.|++++..+. +...-..-. .-..
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~i-~~~---~l~~~~~l~~~~---------~~~~~S~ig~~~~~~l~~ 186 (238)
T PF02886_consen 120 LSGSVEVFVVPPNSSKVPLFSLNVDTSADVQLSI-SNN---KLTGSLSLDKFD---------LSLVSSSIGPFDVSSLEF 186 (238)
T ss_dssp EEEEEEEEEE-TTCGCEEEEEEEEEEEEEEEEEE-ETT---EEEEEEEEEEEE---------EEEEEECTSS--GHHHHH
T ss_pred EEEEEEEEEecCCCceEEEEEEEEEEEEEEEEEE-eCC---EEEEEEecccEE---------EEEecCCcCccchHHHHH
Confidence 44555554 445677778888777777776421 122 689998886553 222211111 1112
Q ss_pred hHHHHHHhcChhHHHHHHH
Q 018146 139 RLKDAMWVKGKPVIEEKVK 157 (360)
Q Consensus 139 ~~~~~~~~~~~~~lr~~l~ 157 (360)
.++.+++.-+.|.|.++|+
T Consensus 187 ~l~~~~~~~~~p~lN~~L~ 205 (238)
T PF02886_consen 187 LLNSILKEVLLPKLNKKLA 205 (238)
T ss_dssp HHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 2445777888888887775
No 60
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=34.36 E-value=3.3e+02 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=26.2
Q ss_pred eeEEEEEEEcCCHHHHHHHh-cChhhHhcccCC
Q 018146 224 KNISLSEKFSCRAKDLYEIL-MDENRWKGFTQS 255 (360)
Q Consensus 224 ~~i~~~~~f~ap~e~v~~al-Tdpe~l~~W~~~ 255 (360)
..+..+-.+++|++.||++| .|.+....|-..
T Consensus 48 ~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 48 KVFRLTGVLDCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred eEEEEEEEEcCCHHHHHHHHHcCccccceecCc
Confidence 45777889999999999764 588999999753
No 61
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=31.85 E-value=51 Score=19.49 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=16.8
Q ss_pred ChhHHHHHHHHHHHHHHhcCC
Q 018146 148 GKPVIEEKVKVYVEAMARGGP 168 (360)
Q Consensus 148 ~~~~lr~~l~~f~~~L~~~~~ 168 (360)
+..+|..+...++..|++||+
T Consensus 2 LK~~LlrkY~g~i~~Lr~Ef~ 22 (22)
T PF03789_consen 2 LKHQLLRKYSGYISSLRQEFS 22 (22)
T ss_pred HHHHHHHHHhHhHHHHHHHhC
Confidence 345678888999999999983
No 62
>PF15174 PRNT: Prion-related protein testis-specific
Probab=29.25 E-value=15 Score=25.63 Aligned_cols=17 Identities=24% Similarity=0.172 Sum_probs=14.7
Q ss_pred eEEeEEEEEeecCeeee
Q 018146 65 KVEGEAYVNVRKGKIIP 81 (360)
Q Consensus 65 ~v~Gda~v~~RKGK~i~ 81 (360)
.+-|||..++||.|+|+
T Consensus 34 qiPvDcQACnRkskkiy 50 (51)
T PF15174_consen 34 QIPVDCQACNRKSKKIY 50 (51)
T ss_pred cCCcchhhhccccceec
Confidence 45789999999999986
No 63
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=27.93 E-value=3.6e+02 Score=22.53 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=18.8
Q ss_pred hHHHHHHhcChhHHHHHHHHHHHHHHh
Q 018146 139 RLKDAMWVKGKPVIEEKVKVYVEAMAR 165 (360)
Q Consensus 139 ~~~~~~~~~~~~~lr~~l~~f~~~L~~ 165 (360)
.|..+.+..+.+..++.+.+|.+.|..
T Consensus 111 ~la~~g~~~i~~~~~~l~~~f~~~l~~ 137 (140)
T PF06240_consen 111 PLASLGQRLIESVARRLIEQFFENLER 137 (140)
T ss_dssp HHHHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677788888888887765
No 64
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=23.69 E-value=5.7e+02 Score=23.36 Aligned_cols=33 Identities=3% Similarity=0.043 Sum_probs=28.5
Q ss_pred ceeeEEEEEEEcCCHHHHHHHhcChhhHhcccC
Q 018146 222 GFKNISLSEKFSCRAKDLYEILMDENRWKGFTQ 254 (360)
Q Consensus 222 ~t~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~ 254 (360)
....+..+-.+.+|+++||+.|.|.+.-..|-.
T Consensus 43 ~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~ 75 (205)
T cd08874 43 TYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDT 75 (205)
T ss_pred CcceEEEEEEEcCCHHHHHHHHhCcchhhhhHH
Confidence 345666788999999999999999999999965
No 65
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.47 E-value=4.2e+02 Score=21.99 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=41.2
Q ss_pred EEeEEEEEeecCeeeeEEEEEEEEEEEEEeeCCC--CCceeeeeEEEEcccccCCC--CCCCcEEEEEEccC
Q 018146 66 VEGEAYVNVRKGKIIPGYELNVTVSWEGEAKDGD--GGSLLKVDGLVEIPYISDEN--ADENPEIRVSVKDE 133 (360)
Q Consensus 66 v~Gda~v~~RKGK~i~~yd~~i~l~w~g~~~~~~--~~~~~~~~G~i~ipe~s~e~--~~dd~~~~v~~~~~ 133 (360)
++|.+. ..+|||.+-+|=|+--|-+.-...+.. +.+.-.++..|.+.++.-+. +.|++-|.+.....
T Consensus 14 ~~~~~~-~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~ 84 (114)
T cd01232 14 WDPKAG-LIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDP 84 (114)
T ss_pred EeCCcc-ccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCC
Confidence 445543 367887777776666565654433222 33234578899988886643 56678888876654
No 66
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=20.16 E-value=6.7e+02 Score=22.90 Aligned_cols=31 Identities=3% Similarity=0.060 Sum_probs=28.0
Q ss_pred eeEEEEEEEcCCHHHHHHHhcChhhHhcccC
Q 018146 224 KNISLSEKFSCRAKDLYEILMDENRWKGFTQ 254 (360)
Q Consensus 224 ~~i~~~~~f~ap~e~v~~alTdpe~l~~W~~ 254 (360)
.-..++-.+.+++++||+.+.+++.-..|-.
T Consensus 46 kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~ 76 (204)
T cd08904 46 NLYRVEGIIPESPAKLIQFMYQPEHRIKWDK 76 (204)
T ss_pred eEEEEEEEecCCHHHHHHHHhccchhhhhcc
Confidence 5678889999999999999999999999965
Done!