BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018148
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A
Mechanism For Histone Binding And Shuttling
Length = 417
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 149/307 (48%), Gaps = 33/307 (10%)
Query: 6 DCLTEESFFV--VQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEER 63
D L + + +Q++L +L GQ S + L V++++ L+ +QSE E+E +F E
Sbjct: 58 DILANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEM 117
Query: 64 AALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQ--------------EEDKATEE- 108
LE K+ + Y+P++ +R I++G + P ++A Q EE+KA +
Sbjct: 118 FELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDS 177
Query: 109 -----KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKW-FRIDDPKGFKLEFYFDP 162
KG+P FWLTA++N ++ + IT+RD L++L+DI + D GFKL F FD
Sbjct: 178 EEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDS 237
Query: 163 --NPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYPGXXXXXX--XXXXXXXXXX 214
NP+F N +L KTY E + I + A G EI W
Sbjct: 238 SANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTT 297
Query: 215 XXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPH 274
I K ESFFNFF+PP++ + + DY IG ++DK+IP
Sbjct: 298 KQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLAL--DYSIGEQLKDKLIPR 355
Query: 275 AVSWFTG 281
AV WFTG
Sbjct: 356 AVDWFTG 362
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365)
pdb|2Z2R|B Chain B, Nucleosome Assembly Proteins I (Nap-1, 74-365)
Length = 292
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 31/294 (10%)
Query: 20 LQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYT 79
L +L GQ S + L V++++ L+ +QSE E+E +F E LE K+ + Y+P++
Sbjct: 1 LGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWE 60
Query: 80 KRYEIVNGVVEGAPNEVAMDQ--------------EEDKATEE------KGVPDFWLTAM 119
+R I++G + P ++A Q EE+KA + KG+P FWLTA+
Sbjct: 61 QRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTAL 120
Query: 120 KNNDVLSEEITERDEGALKFLKDIKW-FRIDDPKGFKLEFYFDP--NPYFKNSVLTKTYH 176
+N ++ + IT+RD L++L+DI + D GFKL F FD NP+F N +L KTY
Sbjct: 121 ENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYF 180
Query: 177 MIDE----DEPILEKAIGTEIEWYPGXXXXXX--XXXXXXXXXXXXXXPITKTEECESFF 230
E + I + A G EI W I K ESFF
Sbjct: 181 YQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFF 240
Query: 231 NFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAI 284
NFF+PP++ + + DY IG ++DK+IP AV WFTG A+
Sbjct: 241 NFFDPPKIQNEDQDEELEEDLEERLAL--DYSIGEQLKDKLIPRAVDWFTGAAL 292
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi
Length = 276
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 133/270 (49%), Gaps = 32/270 (11%)
Query: 32 EKLTPAVRKRVEVLREI---QSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 88
EK+T ++ E L+++ Q E+ + E+KF E L KY LY P+Y KR E + G
Sbjct: 8 EKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGN 67
Query: 89 VE---GAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKW 145
E G PN +P+FWL A++NN+ +S I + DE L +L DI+
Sbjct: 68 GEAKIGTPN----------------LPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRC 111
Query: 146 FRIDDPK----GFKLEFYFDPNPYFKNSVLTKTYHM--IDED-EPILEKAIGTEIEWYPG 198
I K GF L F+F PNP+F NSVLTKTYHM +D D EP+L T I+WY
Sbjct: 112 DYIKKNKEKKEGFILSFHFAPNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDN 171
Query: 199 XXXXXXXXXXXXXXXXXX-XXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQM 257
+ +T +SFF+FF +VP Q +M
Sbjct: 172 KNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEM 231
Query: 258 --EQDYDIGSTIRDKIIPHAVSWFTGEAIQ 285
E DY++ TI+++IIP+AV +F G I+
Sbjct: 232 IIEGDYEVALTIKERIIPYAVDYFLGIIIE 261
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly
Protein (Nap)
Length = 359
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 138/291 (47%), Gaps = 40/291 (13%)
Query: 8 LTEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALE 67
L F++ +K+ +L + + L+KL + Q E+ + E+KF E L
Sbjct: 32 LKYRCFYLYDDKMTDLTEEQKETLKKL-----------KLYQKEYYDYESKFEYELFLLR 80
Query: 68 AKYQKLYQPMYTKRYEIVNGVVE---GAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDV 124
KY LY P+Y KR E + G E G PN +P+FWL A++NN+
Sbjct: 81 QKYHDLYGPIYDKRREALVGNGEAKIGTPN----------------LPEFWLRALRNNNT 124
Query: 125 LSEEITERDEGALKFLKDIKWFRIDDPK----GFKLEFYFDPNPYFKNSVLTKTYHM--I 178
+S I + DE L +L DI+ I K GF L FYF NP+F NSVLTKTYHM +
Sbjct: 125 VSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCV 184
Query: 179 D-EDEPILEKAIGTEIEWYPGXXXXXXXXXXXXXXXXXX-XXPITKTEECESFFNFFNPP 236
D ++EP+L T I+WY + +T +SFF+FF
Sbjct: 185 DCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSH 244
Query: 237 QVPXXXXXXXXXXXXXLQNQM--EQDYDIGSTIRDKIIPHAVSWFTGEAIQ 285
+VP Q +M E DY++ TI+++IIP+AV ++ G I+
Sbjct: 245 KVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYYLGIIIE 295
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum
pdb|3GYW|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum At 2.4 A Resolution
Length = 249
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 127/261 (48%), Gaps = 29/261 (11%)
Query: 34 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVE--- 90
LT ++ ++ L+ Q E+ + E+KF E L KY LY P+Y KR E + G E
Sbjct: 3 LTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKI 62
Query: 91 GAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDD 150
G PN +P+FWL A++NN+ +S I + DE L +L DI+ I
Sbjct: 63 GTPN----------------LPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKK 106
Query: 151 PK----GFKLEFYFDPNPYFKNSVLTKTYHM--IDED-EPILEKAIGTEIEWYPGXXXXX 203
K GF L FYF NP+F NSVLTKTYHM +D D EP+L T I+WY
Sbjct: 107 NKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILK 166
Query: 204 XXXXXXXXXXXXX-XXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQM--EQD 260
+ +T +SFF+FF +VP Q +M E D
Sbjct: 167 KNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGD 226
Query: 261 YDIGSTIRDKIIPHAVSWFTG 281
Y++ TI+++IIP+AV ++ G
Sbjct: 227 YEVALTIKERIIPYAVDYYLG 247
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|B Chain B, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|P Chain P, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|Q Chain Q, Crystal Structure Of SetTAF-1betaINHAT
Length = 225
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 32/212 (15%)
Query: 23 LAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRY 82
L H E ++ +E + E+Q+E D L + EE +E KY KL QP + KR
Sbjct: 13 LNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRS 72
Query: 83 EIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKD 142
E++ +P+FW+T N+ +S + E DE A+ +L
Sbjct: 73 ELI-----------------------AKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTR 109
Query: 143 IKWFRIDDPK-GFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGXXX 201
++ +D K G++++FYFD NPYF+N VL+K +HM + +P + TEI+W G
Sbjct: 110 VEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESGDP---SSKSTEIKWKSGKDM 166
Query: 202 XXXXXXXXXXXXXXXXXPITKTEECESFFNFF 233
+ EE ESFF +F
Sbjct: 167 TKRSSQTQNKASRKR-----QHEEPESFFTWF 193
>pdb|3U37|A Chain A, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|B Chain B, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|C Chain C, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|D Chain D, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|E Chain E, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|F Chain F, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|G Chain G, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|3U37|H Chain H, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus
Length = 408
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 23 LAGQHSDVL----EKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 78
L G+HS L EK TP KRV + RE+Q+ +D+ + K + + ++Q + P+Y
Sbjct: 110 LPGEHSLCLFRSMEKTTP---KRVRLYRELQAMNDDPKVKLLFKGFKHDGEFQNV--PVY 164
Query: 79 TKRYEIV-NGVVEGAPNEVAMD 99
+++ E + + + G + A D
Sbjct: 165 SRKLEFIGDSITSGEGSYGAFD 186
>pdb|4DEV|A Chain A, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|B Chain B, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|C Chain C, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|D Chain D, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|E Chain E, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|F Chain F, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|G Chain G, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus.
pdb|4DEV|H Chain H, An Acetyl Xylan Esterase (est2a) From The Rumen Bacterium
Butyrivibrio Proteoclasticus
Length = 408
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 23 LAGQHSDVL----EKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 78
L G+HS L EK TP KRV + RE+Q+ +D+ + K + + ++Q + P+Y
Sbjct: 110 LPGEHSLCLFRSMEKTTP---KRVRLYRELQAMNDDPKVKLLFKGFKHDGEFQNV--PVY 164
Query: 79 TKRYEIV-NGVVEGAPNEVAMD 99
+++ E + + + G + A D
Sbjct: 165 SRKLEFIGDSITSGEGSYGAFD 186
>pdb|3RJR|A Chain A, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|B Chain B, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|C Chain C, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|D Chain D, Crystal Structure Of Pro-tgf Beta 1
Length = 363
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 137 LKFLKDIKWFRIDDPKGFKLEFYFDPNPYF 166
+ F KD+ W I +PKG+ F P PY
Sbjct: 273 IDFRKDLGWKWIHEPKGYHANFCLGPCPYI 302
>pdb|1KLD|A Chain A, Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33
Structures
pdb|1KLD|B Chain B, Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33
Structures
pdb|1KLC|A Chain A, Solution Structure Of Tgf-B1, Nmr, Minimized Average
Structure
pdb|1KLC|B Chain B, Solution Structure Of Tgf-B1, Nmr, Minimized Average
Structure
pdb|1KLA|A Chain A, Solution Structure Of Tgf-B1, Nmr, Models 1-17 Of 33
Structures
pdb|1KLA|B Chain B, Solution Structure Of Tgf-B1, Nmr, Models 1-17 Of 33
Structures
pdb|3KFD|A Chain A, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|B Chain B, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|C Chain C, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|D Chain D, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
Length = 112
Score = 31.2 bits (69), Expect = 0.97, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 137 LKFLKDIKWFRIDDPKGFKLEFYFDPNPY 165
+ F KD+ W I +PKG+ F P PY
Sbjct: 22 IDFRKDLGWKWIHEPKGYHANFCLGPCPY 50
>pdb|1KTZ|A Chain A, Crystal Structure Of The Human Tgf-Beta Type Ii Receptor
Extracellular Domain In Complex With Tgf-Beta3
pdb|1TGJ|A Chain A, Human Transforming Growth Factor-beta 3, Crystallized From
Dioxane
pdb|1TGK|A Chain A, Human Transforming Growth Factor Beta 3, Crystallized From
Peg 4000
pdb|2PJY|A Chain A, Structural Basis For Cooperative Assembly Of The Tgf-Beta
Signaling Complex
pdb|3EO1|C Chain C, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|F Chain F, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|I Chain I, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|L Chain L, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
Length = 112
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 137 LKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKT 174
+ F +D+ W + +PKG+ F P PY +++ T +
Sbjct: 22 IDFRQDLGWKWVHEPKGYYANFCSGPCPYLRSADTTHS 59
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 33/165 (20%)
Query: 6 DCLTEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEH---DELEAKFFEE 62
D + +S ++ L+NL G D ++ L R+ +EVL EI+ E DE+E E
Sbjct: 160 DLIEAKSETSLKLSLRNLKGGLRDFVDSLR---RELIEVLAEIRVELDYPDEIETNTGEV 216
Query: 63 RAALEAKYQKLYQPMYTKRYEI-----VNGVVEGAPN---EVAMDQ--EEDKATEEKGVP 112
LE +KL + + I + V+ G PN +++ ED+A V
Sbjct: 217 VTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAI----VT 272
Query: 113 DFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLE 157
D T DV+SEEI R G L FRI D G + E
Sbjct: 273 DIPGTT---RDVISEEIVIR--GIL--------FRIVDTAGVRSE 304
>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|B Chain B, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|C Chain C, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|D Chain D, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|E Chain E, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|F Chain F, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
Length = 193
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 66/155 (42%), Gaps = 30/155 (19%)
Query: 47 EIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKAT 106
+IQ + ++L+ K E+ ++ +Y + +P++ KR EI+
Sbjct: 7 DIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEII--------------------- 45
Query: 107 EEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLK-DIKWFRIDDPKGFKLEFYF--DPN 163
+ +P FW ++ + LS+ + E + +K D+K +D+ +K+ F F
Sbjct: 46 --QKIPGFWANTLRKHPALSDIVPEDIDILNHLVKLDLK-DNMDNNGSYKITFIFGEKAK 102
Query: 164 PYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPG 198
+ + L K + E ++E T I+W G
Sbjct: 103 EFMEPLTLVKHVTFDNNQEKVVE---CTRIKWKEG 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,586,356
Number of Sequences: 62578
Number of extensions: 316639
Number of successful extensions: 1010
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 13
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)