Query 018148
Match_columns 360
No_of_seqs 199 out of 670
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1507 Nucleosome assembly pr 100.0 2.1E-86 4.6E-91 640.4 19.1 275 9-287 46-343 (358)
2 PTZ00007 (NAP-L) nucleosome as 100.0 2.9E-74 6.4E-79 563.6 24.1 250 26-288 27-284 (337)
3 PF00956 NAP: Nucleosome assem 100.0 1.4E-60 3E-65 450.5 17.2 239 39-283 1-244 (244)
4 PTZ00008 (NAP-S) nucleosome as 100.0 2.1E-54 4.6E-59 393.7 14.2 180 54-287 2-184 (185)
5 KOG1508 DNA replication factor 99.9 4E-28 8.8E-33 231.8 9.6 203 30-285 22-225 (260)
6 PF11629 Mst1_SARAH: C termina 95.1 0.13 2.7E-06 37.6 6.8 37 45-81 10-46 (49)
7 PF04931 DNA_pol_phi: DNA poly 93.1 0.057 1.2E-06 59.6 2.6 19 40-58 341-359 (784)
8 PF03066 Nucleoplasmin: Nucleo 89.6 0.1 2.2E-06 46.5 0.0 23 157-179 17-41 (149)
9 KOG1189 Global transcriptional 85.5 2.5 5.4E-05 46.6 7.4 111 39-161 691-808 (960)
10 PF04147 Nop14: Nop14-like fam 82.2 1.4 3.1E-05 49.3 4.2 6 76-81 69-74 (840)
11 PF07352 Phage_Mu_Gam: Bacteri 81.2 7.8 0.00017 34.1 7.7 50 37-86 4-53 (149)
12 PHA02608 67 prohead core prote 80.6 0.99 2.1E-05 36.0 1.6 6 262-267 38-43 (80)
13 KOG3064 RNA-binding nuclear pr 78.3 1.4 3E-05 42.8 2.0 55 33-87 71-129 (303)
14 KOG1832 HIV-1 Vpr-binding prot 76.3 1.4 3E-05 49.4 1.7 8 136-143 1219-1226(1516)
15 KOG0943 Predicted ubiquitin-pr 69.2 3.5 7.7E-05 47.7 2.7 18 62-79 1442-1459(3015)
16 KOG1832 HIV-1 Vpr-binding prot 66.3 3.1 6.8E-05 46.7 1.6 8 165-172 1245-1252(1516)
17 COG4396 Mu-like prophage host- 61.6 28 0.00061 31.1 6.3 50 36-85 18-67 (170)
18 PTZ00415 transmission-blocking 55.7 7.6 0.00016 46.5 2.3 8 198-205 84-91 (2849)
19 PF07516 SecA_SW: SecA Wing an 53.6 53 0.0012 30.4 7.3 46 43-88 9-54 (214)
20 KOG2076 RNA polymerase III tra 53.5 11 0.00024 42.2 3.1 10 336-345 121-130 (895)
21 PF04871 Uso1_p115_C: Uso1 / p 53.4 10 0.00022 33.2 2.3 7 280-286 110-116 (136)
22 PTZ00415 transmission-blocking 51.7 7.6 0.00016 46.5 1.5 6 271-276 131-136 (2849)
23 PF03938 OmpH: Outer membrane 50.8 98 0.0021 26.8 8.2 52 32-85 71-122 (158)
24 KOG4484 Uncharacterized conser 50.0 81 0.0018 29.1 7.5 40 14-55 27-67 (199)
25 smart00502 BBC B-Box C-termina 48.3 92 0.002 25.2 7.2 55 32-86 10-64 (127)
26 cd00179 SynN Syntaxin N-termin 46.8 1.6E+02 0.0035 25.0 8.9 39 50-88 88-129 (151)
27 PF07195 FliD_C: Flagellar hoo 45.7 77 0.0017 29.9 7.1 62 9-73 169-230 (239)
28 KOG2038 CAATT-binding transcri 45.5 13 0.00028 41.3 2.0 10 160-169 692-701 (988)
29 PF15290 Syntaphilin: Golgi-lo 43.5 65 0.0014 31.9 6.2 19 129-147 140-158 (305)
30 PF03344 Daxx: Daxx Family; I 43.2 7.9 0.00017 42.8 0.0 13 153-165 263-275 (713)
31 PF03115 Astro_capsid: Astrovi 43.1 8 0.00017 43.2 0.0 7 228-234 588-594 (787)
32 PRK15422 septal ring assembly 39.2 1.3E+02 0.0028 24.3 6.3 31 28-58 3-33 (79)
33 KOG2038 CAATT-binding transcri 38.6 19 0.00041 40.2 1.9 12 190-201 757-768 (988)
34 PRK13103 secA preprotein trans 38.3 1.1E+02 0.0024 35.0 7.9 84 4-88 586-670 (913)
35 PF14389 Lzipper-MIP1: Leucine 38.2 1.5E+02 0.0032 24.0 6.7 56 15-81 33-88 (88)
36 PF14197 Cep57_CLD_2: Centroso 37.4 1.4E+02 0.0031 23.2 6.2 59 10-69 4-62 (69)
37 PF07106 TBPIP: Tat binding pr 37.1 2.1E+02 0.0046 25.3 8.3 24 61-85 145-168 (169)
38 PF03344 Daxx: Daxx Family; I 35.8 12 0.00026 41.3 0.0 8 228-235 347-354 (713)
39 PRK11546 zraP zinc resistance 34.2 1.1E+02 0.0025 27.2 5.8 17 29-45 39-55 (143)
40 smart00055 FCH Fes/CIP4 homolo 33.9 2.1E+02 0.0046 22.0 6.9 24 57-80 29-52 (87)
41 COG3883 Uncharacterized protei 33.8 2.8E+02 0.006 27.3 8.9 22 110-131 114-135 (265)
42 COG3074 Uncharacterized protei 33.0 2.5E+02 0.0054 22.3 7.3 32 28-59 3-34 (79)
43 PF10417 1-cysPrx_C: C-termina 32.7 12 0.00026 26.0 -0.4 15 188-202 9-23 (40)
44 KOG0574 STE20-like serine/thre 32.2 49 0.0011 33.6 3.5 39 43-81 454-492 (502)
45 PTZ00007 (NAP-L) nucleosome as 32.0 46 0.001 33.7 3.4 10 225-234 222-231 (337)
46 PF06005 DUF904: Protein of un 31.4 2.6E+02 0.0056 21.9 7.2 45 30-74 5-52 (72)
47 KOG1189 Global transcriptional 30.8 39 0.00085 37.7 2.8 19 40-58 566-584 (960)
48 PF12998 ING: Inhibitor of gro 30.8 1E+02 0.0022 24.7 4.8 28 29-56 8-35 (105)
49 KOG3540 Beta amyloid precursor 30.4 42 0.00091 35.6 2.8 20 263-282 163-184 (615)
50 PF00611 FCH: Fes/CIP4, and EF 29.9 1.8E+02 0.0039 22.3 5.9 30 57-86 29-58 (91)
51 CHL00122 secA preprotein trans 29.6 1.8E+02 0.0039 33.2 7.7 47 41-87 662-708 (870)
52 PF05086 Dicty_REP: Dictyostel 29.3 25 0.00053 39.2 1.0 15 156-170 687-701 (911)
53 PF11333 DUF3135: Protein of u 28.2 3.2E+02 0.0069 22.0 8.0 62 9-79 16-77 (83)
54 PF07361 Cytochrom_B562: Cytoc 27.8 1.3E+02 0.0028 25.0 4.9 42 34-75 51-103 (103)
55 PRK12903 secA preprotein trans 27.8 2E+02 0.0044 32.9 7.7 48 41-88 569-616 (925)
56 PRK00409 recombination and DNA 25.8 3.1E+02 0.0067 30.8 8.8 77 9-85 500-579 (782)
57 PF11705 RNA_pol_3_Rpc31: DNA- 25.5 52 0.0011 31.0 2.4 7 163-169 68-74 (233)
58 COG5406 Nucleosome binding fac 25.4 54 0.0012 36.1 2.6 36 126-161 820-860 (1001)
59 PF06464 DMAP_binding: DMAP1-b 24.7 1.1E+02 0.0025 25.7 4.1 39 31-72 2-43 (111)
60 PRK13107 preprotein translocas 24.2 2.6E+02 0.0056 32.1 7.7 47 42-88 624-670 (908)
61 PRK01546 hypothetical protein; 24.0 1.2E+02 0.0027 24.4 3.8 44 34-78 2-45 (79)
62 KOG3958 Putative dynamitin [Cy 23.9 3.6E+02 0.0078 27.2 7.8 73 8-85 240-342 (371)
63 KOG1991 Nuclear transport rece 23.7 47 0.001 37.9 1.9 14 11-24 499-512 (1010)
64 PRK08032 fliD flagellar cappin 23.7 2.6E+02 0.0056 29.2 7.3 56 11-70 385-440 (462)
65 PF05086 Dicty_REP: Dictyostel 23.7 40 0.00086 37.6 1.3 12 165-176 733-744 (911)
66 KOG1991 Nuclear transport rece 23.6 46 0.001 38.0 1.8 9 227-235 817-826 (1010)
67 PF15463 ECM11: Extracellular 23.4 4.6E+02 0.01 22.8 7.8 57 29-88 64-120 (139)
68 PRK14082 hypothetical protein; 23.4 1E+02 0.0022 23.9 3.2 8 109-116 55-62 (65)
69 TIGR01069 mutS2 MutS2 family p 23.3 3.6E+02 0.0078 30.3 8.7 45 41-85 530-574 (771)
70 PRK13104 secA preprotein trans 23.3 2.7E+02 0.0058 32.0 7.6 47 42-88 620-666 (896)
71 PRK06798 fliD flagellar cappin 23.2 2.6E+02 0.0056 29.2 7.1 57 11-71 358-414 (440)
72 PRK02539 hypothetical protein; 22.6 1.5E+02 0.0032 24.3 4.0 44 34-78 1-44 (85)
73 COG0497 RecN ATPase involved i 22.6 3.1E+02 0.0068 29.7 7.7 76 9-85 295-373 (557)
74 KOG3647 Predicted coiled-coil 22.3 5.6E+02 0.012 25.5 8.6 20 34-53 138-157 (338)
75 KOG3241 Uncharacterized conser 22.1 62 0.0014 30.1 2.1 14 64-78 52-65 (227)
76 PRK10780 periplasmic chaperone 21.6 5.5E+02 0.012 22.7 8.1 17 69-85 113-129 (165)
77 COG1507 Uncharacterized conser 21.6 1.2E+02 0.0025 27.5 3.6 23 64-86 83-105 (167)
78 PF00435 Spectrin: Spectrin re 21.5 1.7E+02 0.0037 22.1 4.3 27 58-84 77-103 (105)
79 COG1382 GimC Prefoldin, chaper 21.4 2.6E+02 0.0056 24.2 5.6 27 31-57 1-27 (119)
80 PF08581 Tup_N: Tup N-terminal 21.2 2.8E+02 0.0062 22.1 5.5 23 47-69 50-72 (79)
81 PRK12904 preprotein translocas 20.9 4.9E+02 0.011 29.7 9.0 47 42-88 606-652 (830)
82 PF03896 TRAP_alpha: Transloco 20.9 58 0.0013 32.2 1.7 13 271-283 14-26 (285)
83 PRK12902 secA preprotein trans 20.8 3.5E+02 0.0076 31.2 7.9 50 39-88 718-767 (939)
84 PF15372 DUF4600: Domain of un 20.2 6E+02 0.013 22.3 9.9 72 12-86 23-100 (129)
85 PLN02939 transferase, transfer 20.2 6.4E+02 0.014 29.4 9.8 13 110-122 410-423 (977)
No 1
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.1e-86 Score=640.37 Aligned_cols=275 Identities=56% Similarity=0.917 Sum_probs=249.4
Q ss_pred CHHHHHHHHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148 9 TEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 88 (360)
Q Consensus 9 ~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~ 88 (360)
++.++++++.||.+|++++++++++||++||+||.||++||.++..|+++|+++++.||+||+++|+|||+||++||+|.
T Consensus 46 ~~~~~~~~~~r~~~l~~~~s~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~ 125 (358)
T KOG1507|consen 46 TPKLLSALDGRLASLAGLLSDMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGE 125 (358)
T ss_pred ChhhhcccchhhhcccCCCchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccchhh------------hhhhhhccCCCccHHHHHhcChhhhhccchhhHHhhccccccEEEEeCCC-CceE
Q 018148 89 VEGAPNEVAMDQE------------EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP-KGFK 155 (360)
Q Consensus 89 ~e~~~~E~~~~~~------------~~~~~~~kgIP~FWl~vL~n~~~ls~~I~e~De~~LkyL~DI~ve~~ed~-~gFk 155 (360)
++|+.+++++... ......++|||+||||||+|+++|++||+++|++||+||+||++.+..++ .||+
T Consensus 126 ~EP~eee~e~~~~~~de~~~~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fk 205 (358)
T KOG1507|consen 126 VEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFK 205 (358)
T ss_pred ccCcccccccccccccccccccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceE
Confidence 9998777654211 12234679999999999999999999999999999999999999999887 6999
Q ss_pred EEEEeCCCCCcccceEEEEEeec---cCCCc------ceecceeeeeeecCCCCCchhhhhcCCC-CCCCCCcccccccc
Q 018148 156 LEFYFDPNPYFKNSVLTKTYHMI---DEDEP------ILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEE 225 (360)
Q Consensus 156 L~F~F~~NpYF~N~vLtK~y~~~---~~~~p------~~~~~~gt~I~WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~ 225 (360)
|+|||+|||||+|+||||||+|+ +.++| .+.+|+||.|+|++|||||+++++|||| ||++++|+|+|+++
T Consensus 206 lEFhFd~N~YFtN~vLTKTY~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp 285 (358)
T KOG1507|consen 206 LEFHFDPNPYFTNEVLTKTYFLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVP 285 (358)
T ss_pred EEEEcCCCccccccceeeeeeeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeeccc
Confidence 99999999999999999999998 55555 7889999999999999999999888875 67889999999999
Q ss_pred cccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccccchhhhcccccccc
Q 018148 226 CESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE 287 (360)
Q Consensus 226 ~~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eIg~~ikd~IiP~Av~yftGea~~~d 287 (360)
++||||||+||.+| +.++.|++.. +++|+.||+||++||++|||+||.||||+|++++
T Consensus 286 ~eSFFNFFsPP~ip-d~~d~Ded~~---~~~L~~DyeIG~~lr~~IIPrAV~~fTGea~e~~ 343 (358)
T KOG1507|consen 286 NESFFNFFSPPEIP-DEEDLDEDDL---EELLELDYEIGETLRDKIIPRAVLWFTGEALEDE 343 (358)
T ss_pred chhhhhccCCCCCC-cccccCchHH---HHHHHhhHHHHHHHHhhhhhheeeeecccccccc
Confidence 99999999999999 4444444332 7899999999999999999999999999995543
No 2
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=100.00 E-value=2.9e-74 Score=563.58 Aligned_cols=250 Identities=44% Similarity=0.757 Sum_probs=227.0
Q ss_pred CCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhh
Q 018148 26 QHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKA 105 (360)
Q Consensus 26 ~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~ 105 (360)
..+++|++||+.+|+||.+|+.||.++..|+++|++++++|+++|+++|+|||++|++||+|..+..
T Consensus 27 ~~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e------------- 93 (337)
T PTZ00007 27 LDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAE------------- 93 (337)
T ss_pred cccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccc-------------
Confidence 3678899999999999999999999999999999999999999999999999999999999864321
Q ss_pred hhccCCCccHHHHHhcChhhhhccchhhHHhhccccccEEEEeCCC--CceEEEEEeCCCCCcccceEEEEEeecc---C
Q 018148 106 TEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP--KGFKLEFYFDPNPYFKNSVLTKTYHMID---E 180 (360)
Q Consensus 106 ~~~kgIP~FWl~vL~n~~~ls~~I~e~De~~LkyL~DI~ve~~ed~--~gFkL~F~F~~NpYF~N~vLtK~y~~~~---~ 180 (360)
..++|||+||++||+||+.|+.+|+++|++||+||+||+|+++.+. +||+|+|+|.+||||+|++|||+|+|.. .
T Consensus 94 ~~~~gIP~FWl~vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~ 173 (337)
T PTZ00007 94 IGTPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGD 173 (337)
T ss_pred cccCCcccHHHHHHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCC
Confidence 2347999999999999999999999999999999999999987653 6999999999999999999999999964 2
Q ss_pred CCcceecceeeeeeecCCCCCchhhhhcCCC-CCCCCCcccccccccccccccccccCCCCCCC--CCChhHHHHHHHhh
Q 018148 181 DEPILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDE--DIDEDTAEELQNQM 257 (360)
Q Consensus 181 ~~p~~~~~~gt~I~WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnfF~~~~~p~d~~--~~ded~~eel~~~l 257 (360)
+.|++.+++||+|+||+|||||+++++|||| |+++.+|+|+++++++||||||+||.+|.+++ .++++++++++++|
T Consensus 174 ~~p~~~~~~~t~I~WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l 253 (337)
T PTZ00007 174 DEPLLSNTVATEIDWKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIV 253 (337)
T ss_pred CCceeecceeeeceeeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHH
Confidence 3577789999999999999999999998876 56778899999999999999999999987653 34556778899999
Q ss_pred hccccccccccccccccchhhhccccccccc
Q 018148 258 EQDYDIGSTIRDKIIPHAVSWFTGEAIQEEE 288 (360)
Q Consensus 258 ~~D~eIg~~ikd~IiP~Av~yftGea~~~dd 288 (360)
+.||+||.+||++|||+||.||||+|+++++
T Consensus 254 ~~DyeiG~~ikd~IIP~AV~yftGea~d~~~ 284 (337)
T PTZ00007 254 ETDYEIGITIRDKLIPYAVYWFLGEAIDEDS 284 (337)
T ss_pred HHhHHHHHHHHHhcccccHHhhCCCcccccc
Confidence 9999999999999999999999999999765
No 3
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=100.00 E-value=1.4e-60 Score=450.54 Aligned_cols=239 Identities=48% Similarity=0.862 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhhhhccCCCccHHHH
Q 018148 39 RKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTA 118 (360)
Q Consensus 39 ~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWl~v 118 (360)
|+||.+|+.||.++..|+.+|.+++++|+++|.++++|||++|++||+|.++++. ...... ... .++|||+||++|
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~--~~~~~~-~~~-~~~gIP~FW~~v 76 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTE--IEWEER-QEE-KPKGIPGFWLTV 76 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---H--HHH------S-SSTTSTTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccccc--ccccch-hhc-cccCCCCccccc
Confidence 6899999999999999999999999999999999999999999999999887763 111100 011 268999999999
Q ss_pred HhcChhhhhccchhhHHhhccccccEEEEeCC-CCceEEEEEeCCCCCcccceEEEEEeeccCCC---cceecceeeeee
Q 018148 119 MKNNDVLSEEITERDEGALKFLKDIKWFRIDD-PKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDE---PILEKAIGTEIE 194 (360)
Q Consensus 119 L~n~~~ls~~I~e~De~~LkyL~DI~ve~~ed-~~gFkL~F~F~~NpYF~N~vLtK~y~~~~~~~---p~~~~~~gt~I~ 194 (360)
|+||+.++.+|++.|.+||+||+||+|++..+ +.||+|+|+|++||||+|++|+|+|++...++ |...++++|+|+
T Consensus 77 l~n~~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~~~~~~~~~~~~~~~t~I~ 156 (244)
T PF00956_consen 77 LKNHPLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKKEGDEEDPDELKSESTPID 156 (244)
T ss_dssp HHTSHHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEESSSSTTTT-EEEEEE---E
T ss_pred cccCchhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEeccCCCCCCCcceeeeeccc
Confidence 99999999999999999999999999999877 67999999999999999999999999987654 211589999999
Q ss_pred ecCCCCCchhhhhcCCC-CCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccc
Q 018148 195 WYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIP 273 (360)
Q Consensus 195 WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eIg~~ikd~IiP 273 (360)
||+|||+|++++++|++ ++++.+|+++++++.+|||+||+|+.+|+++++.+ +.++.++.+..||+||.+|+++|||
T Consensus 157 Wk~gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~--~~~~~~~~~~~d~ei~~~i~d~i~P 234 (244)
T PF00956_consen 157 WKPGKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEE--EDEDEEEEIEDDFEIGEIIKDDIIP 234 (244)
T ss_dssp BSTTTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSS--TCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccCCCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCccccccc--chhhHHHHhhccHHHHHHHHhheec
Confidence 99999999999888655 55667899999999999999999999886554322 2344567889999999999999999
Q ss_pred cchhhhcccc
Q 018148 274 HAVSWFTGEA 283 (360)
Q Consensus 274 ~Av~yftGea 283 (360)
+||.||||+|
T Consensus 235 ~av~yy~gea 244 (244)
T PF00956_consen 235 NAVKYYTGEA 244 (244)
T ss_dssp HHHHHHHTCT
T ss_pred hHHHHhCCCC
Confidence 9999999997
No 4
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=100.00 E-value=2.1e-54 Score=393.69 Aligned_cols=180 Identities=22% Similarity=0.425 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhhhhccCCCccHHHHHhcChhhhhccchhh
Q 018148 54 ELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERD 133 (360)
Q Consensus 54 ~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWl~vL~n~~~ls~~I~e~D 133 (360)
+|+.+|.+++++|+++|.++++|||++|++|| +|||+||++||+||+.++ +|+++|
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II-----------------------~gIP~FW~~vl~n~~~~~-~I~~~D 57 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEII-----------------------EKIPGFWADTLRRHPALS-YLVPED 57 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH-----------------------hcCccHHHHHHHcCcccc-ccCHHH
Confidence 57899999999999999999999999999999 799999999999999999 999999
Q ss_pred HHhhccccccEEEE-eCCCCceEEEEEeCC--CCCcccceEEEEEeeccCCCcceecceeeeeeecCCCCCchhhhhcCC
Q 018148 134 EGALKFLKDIKWFR-IDDPKGFKLEFYFDP--NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKP 210 (360)
Q Consensus 134 e~~LkyL~DI~ve~-~ed~~gFkL~F~F~~--NpYF~N~vLtK~y~~~~~~~p~~~~~~gt~I~WK~GKnlT~k~~kKk~ 210 (360)
+++|+||+||+|+. .+++.||+|+|+|++ ||||+|++|||+|++..+++. .+++|+|+||+|+|||+++++|+
T Consensus 58 ~~~L~~L~dI~ve~~~~~~~~f~i~F~F~~~~N~yF~n~~LtK~y~~~~~~~~---~~~~t~I~Wk~gkn~t~~~~kk~- 133 (185)
T PTZ00008 58 IDILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIFKNNQEK---VVEVTKIKWKEGKSPIAAAEKAR- 133 (185)
T ss_pred HHHHHHhCceEEEEeecCCCCEEEEEEECCCCCCCcCCCEEEEEEEEecCCCc---eeeeeecccCCCCCcceeeeecc-
Confidence 99999999999997 566679999999975 899999999999999765443 47899999999999999876521
Q ss_pred CCCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccccchhhhcccccccc
Q 018148 211 KKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE 287 (360)
Q Consensus 211 kkg~k~~r~v~k~~~~~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eIg~~ikd~IiP~Av~yftGea~~~d 287 (360)
+ ++++++++.||||||+++..| .+|+||++|+++|||+||.||||++++++
T Consensus 134 --~-----~~~~~~~~~SFF~fF~~~~~~-------------------~~~eIg~~i~e~i~P~av~yy~ge~~~~~ 184 (185)
T PTZ00008 134 --S-----DLDDECIVWSIFEWFTEEEWQ-------------------DRPDVGEIIRREIWHAPLLYYLDTVSIDD 184 (185)
T ss_pred --C-----ccccCCCCCChhhcCCCCccc-------------------CcHHHHHHHHHhhccchHHhhCCcccccc
Confidence 1 456678899999999986433 35789999999999999999999988764
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=99.95 E-value=4e-28 Score=231.82 Aligned_cols=203 Identities=32% Similarity=0.577 Sum_probs=175.5
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhhhhcc
Q 018148 30 VLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEK 109 (360)
Q Consensus 30 ~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~k 109 (360)
.+..-...+..++..|.+||.+++.++++...+++.|+++|...++|+|.+|+.|| +
T Consensus 22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii-----------------------~ 78 (260)
T KOG1508|consen 22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELI-----------------------K 78 (260)
T ss_pred ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHH-----------------------h
Confidence 34556778889999999999999999999999999999999999999999999999 7
Q ss_pred CCCccHHHHHhcChhhhhccchhhHHhhccccccEEEEeCCCC-ceEEEEEeCCCCCcccceEEEEEeeccCCCcceecc
Q 018148 110 GVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKA 188 (360)
Q Consensus 110 gIP~FWl~vL~n~~~ls~~I~e~De~~LkyL~DI~ve~~ed~~-gFkL~F~F~~NpYF~N~vLtK~y~~~~~~~p~~~~~ 188 (360)
.||+||.+++.||+.++.+|...|..+|.||..+.|..+.+.. ||++.|+|.+|+||+|.+++|+|++...+.+ .+
T Consensus 79 ~i~~fw~~~~~~hp~~~~~i~~~~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~~~~~---~s 155 (260)
T KOG1508|consen 79 EIPNFWVTAFLNHPTLSEWIPEEDEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKESGKP---SS 155 (260)
T ss_pred hcccceeEEEecCCcHhhhhhhhhhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeecccCc---cc
Confidence 8999999999999999999999999999999999999887665 9999999999999999999999999887775 58
Q ss_pred eeeeeeecCCCCCchhhhhcCCCCCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhcccccccccc
Q 018148 189 IGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIR 268 (360)
Q Consensus 189 ~gt~I~WK~GKnlT~k~~kKk~kkg~k~~r~v~k~~~~~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eIg~~ik 268 (360)
.+|+|.|+.|+++......- ..++++ ...+.|||.||+....++.+ +|+.+|+
T Consensus 156 ~~t~i~w~~~~~~~~~~~~~--~~~~k~------~~~~~s~f~wf~~~~~~~~d-------------------~i~ei~~ 208 (260)
T KOG1508|consen 156 ESTPISWKEGKPLPNPVKRG--ELKNKN------GDGPKSFFEWFSDTSLKEFD-------------------EILEIIK 208 (260)
T ss_pred ccccccccCCCCCccccccc--cccccc------CcccccHHHHHHhccCCCcc-------------------chhhhhh
Confidence 99999999999887654311 111111 23578999999998776521 6899999
Q ss_pred ccccccchhhhcccccc
Q 018148 269 DKIIPHAVSWFTGEAIQ 285 (360)
Q Consensus 269 d~IiP~Av~yftGea~~ 285 (360)
+.+||+++.||+-....
T Consensus 209 ~~~~~~~~~~~~~~~~~ 225 (260)
T KOG1508|consen 209 DELWPNPLQYYLEPDGE 225 (260)
T ss_pred cccccchhhhhcccccc
Confidence 99999999999854443
No 6
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=95.10 E-value=0.13 Score=37.61 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018148 45 LREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKR 81 (360)
Q Consensus 45 L~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR 81 (360)
+..||..+..|...+..|+-.|++.|+.+++||.+.-
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 5677888999999999999999999999999998753
No 7
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=93.13 E-value=0.057 Score=59.62 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018148 40 KRVEVLREIQSEHDELEAK 58 (360)
Q Consensus 40 ~rv~aL~~lQ~e~~~le~k 58 (360)
.++.-++.++.-+..+..+
T Consensus 341 d~~t~~k~i~~il~~~~~~ 359 (784)
T PF04931_consen 341 DQITKTKTIEQILLSLDVD 359 (784)
T ss_pred HHHHHHHHHHHHHhccchH
Confidence 3445555554444444333
No 8
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=89.59 E-value=0.1 Score=46.50 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=11.1
Q ss_pred EEEeCC--CCCcccceEEEEEeecc
Q 018148 157 EFYFDP--NPYFKNSVLTKTYHMID 179 (360)
Q Consensus 157 ~F~F~~--NpYF~N~vLtK~y~~~~ 179 (360)
.++|.+ |.--.....-++..+..
T Consensus 17 ~~~f~~~~~d~~~h~L~L~~v~Lga 41 (149)
T PF03066_consen 17 DYTFKVDDNDENEHQLSLRQVCLGA 41 (149)
T ss_dssp EEEE-TTSSSSSCEEEEEEEEEE-T
T ss_pred eEEEeCCCCCCcccEEEEEEeecCC
Confidence 466776 44444444445666653
No 9
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=85.46 E-value=2.5 Score=46.56 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhhhhccCCCccHH
Q 018148 39 RKRVEVLREIQS--EHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWL 116 (360)
Q Consensus 39 ~~rv~aL~~lQ~--e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWl 116 (360)
...|..|-.-+. ..++|..+- +-...+++.+..++-+-++-.+.-++..+... +=...+-.|+|. -.
T Consensus 691 ~div~dlg~~~~~~D~del~~EQ--~Er~rr~~ln~~FksF~~kv~~~~~~~~efd~--------pfr~lGF~GvP~-rs 759 (960)
T KOG1189|consen 691 GDIVTDLGKRRRMGDRDELEQEQ--EERDRRAKLNMAFKSFAEKVAEATESELEFDV--------PFRELGFNGVPF-RS 759 (960)
T ss_pred hhHHHhhccCccccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccceeecc--------chhhcCcCCCCc-cc
Confidence 333455554444 344443332 22334455555666666666555555444320 001112346663 34
Q ss_pred HHHhcChhhhhccchhhHHhh-ccccccEEEEeC----CCCceEEEEEeC
Q 018148 117 TAMKNNDVLSEEITERDEGAL-KFLKDIKWFRID----DPKGFKLEFYFD 161 (360)
Q Consensus 117 ~vL~n~~~ls~~I~e~De~~L-kyL~DI~ve~~e----d~~gFkL~F~F~ 161 (360)
+||.. |.-+++++-.+.|.| -.|.+|.+..++ ..+.|-+.|.|+
T Consensus 760 sv~i~-pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDmvfIfK 808 (960)
T KOG1189|consen 760 SVFIQ-PTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDMVFIFK 808 (960)
T ss_pred eeeee-cchhhhhccccCCceEEeecceeeeeeeeeeeccccceEEEEec
Confidence 44432 344566665555554 578888887664 345888899994
No 10
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=82.18 E-value=1.4 Score=49.26 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=2.8
Q ss_pred HHHHHH
Q 018148 76 PMYTKR 81 (360)
Q Consensus 76 Ply~kR 81 (360)
-+.++|
T Consensus 69 ~f~DrR 74 (840)
T PF04147_consen 69 GFVDRR 74 (840)
T ss_pred cccccc
Confidence 344444
No 11
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=81.16 E-value=7.8 Score=34.13 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 018148 37 AVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 86 (360)
Q Consensus 37 ~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~ 86 (360)
.+-..+..|..||.++..+++.+..++.++..+|.....||-.+...+-.
T Consensus 4 ~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~ 53 (149)
T PF07352_consen 4 EADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEG 53 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888999999999999999999999999999999999999888874
No 12
>PHA02608 67 prohead core protein; Provisional
Probab=80.58 E-value=0.99 Score=36.03 Aligned_cols=6 Identities=17% Similarity=0.645 Sum_probs=2.8
Q ss_pred cccccc
Q 018148 262 DIGSTI 267 (360)
Q Consensus 262 eIg~~i 267 (360)
+|++.|
T Consensus 38 eIA~sv 43 (80)
T PHA02608 38 EIARSV 43 (80)
T ss_pred HHHHHH
Confidence 455443
No 13
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=78.29 E-value=1.4 Score=42.83 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 018148 33 KLTPAVRKRVEVLREIQSEHDELEAKF----FEERAALEAKYQKLYQPMYTKRYEIVNG 87 (360)
Q Consensus 33 ~Lp~~v~~rv~aL~~lQ~e~~~le~kf----~~e~~~LE~kY~k~~~Ply~kR~eII~G 87 (360)
++|...-.||.-=++...-+..|+..+ ..-++.+.+++-++.|=|..-|+--+.|
T Consensus 71 H~P~klwErikLSkNyekALeQIde~Ll~Wp~~~~HKcKQRltklTQylir~rklalr~ 129 (303)
T KOG3064|consen 71 HMPRKLWERIKLSKNYEKALEQIDEQLLYWPKYVIHKCKQRLTKLTQYLIRMRKLALRG 129 (303)
T ss_pred cCcHHHHHHHhcchhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777777765555555555555544 2356778888888888888777776653
No 14
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.33 E-value=1.4 Score=49.37 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=4.3
Q ss_pred hhcccccc
Q 018148 136 ALKFLKDI 143 (360)
Q Consensus 136 ~LkyL~DI 143 (360)
++.||+++
T Consensus 1219 l~tylt~~ 1226 (1516)
T KOG1832|consen 1219 LQTYLTDT 1226 (1516)
T ss_pred HHHhcCcc
Confidence 34556555
No 15
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=69.16 E-value=3.5 Score=47.68 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 018148 62 ERAALEAKYQKLYQPMYT 79 (360)
Q Consensus 62 e~~~LE~kY~k~~~Ply~ 79 (360)
-+.+|+.+|-+.+..||.
T Consensus 1442 L~falenkiLkd~Sslfv 1459 (3015)
T KOG0943|consen 1442 LLFALENKILKDQSSLFV 1459 (3015)
T ss_pred hhHHHHHHHHhhhhhhhh
Confidence 345677777777666654
No 16
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=66.31 E-value=3.1 Score=46.74 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=4.4
Q ss_pred CcccceEE
Q 018148 165 YFKNSVLT 172 (360)
Q Consensus 165 YF~N~vLt 172 (360)
-|.|-+||
T Consensus 1245 IlndGvLW 1252 (1516)
T KOG1832|consen 1245 ILNDGVLW 1252 (1516)
T ss_pred EeeCceee
Confidence 35555665
No 17
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=61.59 E-value=28 Score=31.06 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018148 36 PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 85 (360)
Q Consensus 36 ~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII 85 (360)
.+|..-|..|-.||.++..|+.++..++.+++..|..+..||-..-..+-
T Consensus 18 eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~ 67 (170)
T COG4396 18 EEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLT 67 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHH
Confidence 35667788999999999999999999999999999999999876655554
No 18
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=55.74 E-value=7.6 Score=46.55 Aligned_cols=8 Identities=38% Similarity=0.472 Sum_probs=4.5
Q ss_pred CCCCchhh
Q 018148 198 GKCLTQKL 205 (360)
Q Consensus 198 GKnlT~k~ 205 (360)
|++-.+++
T Consensus 84 ~~~~~~~~ 91 (2849)
T PTZ00415 84 GKDTSVKI 91 (2849)
T ss_pred ccccccce
Confidence 56655554
No 19
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=53.58 E-value=53 Score=30.38 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148 43 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 88 (360)
Q Consensus 43 ~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~ 88 (360)
.+|...|.+++..+-...+-+++...=-+.++.-+|..|+.|+.|.
T Consensus 9 ~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~~ 54 (214)
T PF07516_consen 9 KSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEGE 54 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6788889999998888888888888888899999999999999765
No 20
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=53.54 E-value=11 Score=42.24 Aligned_cols=10 Identities=50% Similarity=0.890 Sum_probs=3.9
Q ss_pred CCccCCCCCC
Q 018148 336 GSKKSGRQQA 345 (360)
Q Consensus 336 ~~~~~~~~~~ 345 (360)
+.||+|+.+.
T Consensus 121 ~~~k~~~~~r 130 (895)
T KOG2076|consen 121 GTKKRGRRSR 130 (895)
T ss_pred cCCccCCCCC
Confidence 3344443333
No 21
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=53.42 E-value=10 Score=33.23 Aligned_cols=7 Identities=29% Similarity=0.710 Sum_probs=3.6
Q ss_pred ccccccc
Q 018148 280 TGEAIQE 286 (360)
Q Consensus 280 tGea~~~ 286 (360)
+|+.+.+
T Consensus 110 LG~eVSd 116 (136)
T PF04871_consen 110 LGEEVSD 116 (136)
T ss_pred cCCCccC
Confidence 4555544
No 22
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=51.73 E-value=7.6 Score=46.55 Aligned_cols=6 Identities=33% Similarity=0.301 Sum_probs=2.5
Q ss_pred ccccch
Q 018148 271 IIPHAV 276 (360)
Q Consensus 271 IiP~Av 276 (360)
|||+-+
T Consensus 131 i~~~~~ 136 (2849)
T PTZ00415 131 IIKRRR 136 (2849)
T ss_pred EeehHH
Confidence 344433
No 23
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=50.83 E-value=98 Score=26.78 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=31.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018148 32 EKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 85 (360)
Q Consensus 32 ~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII 85 (360)
.+|++..++.. -+.++.....+..........|.......+.||+.+-..+|
T Consensus 71 ~~ls~~~~~~~--~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v 122 (158)
T PF03938_consen 71 ATLSEEERQKR--QQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAV 122 (158)
T ss_dssp ---SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35665554322 22444444445444555556677888888999999988888
No 24
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.02 E-value=81 Score=29.07 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHHHHHhhhccCCchhhhcCCHHHHH-HHHHHHHHHHHHHHH
Q 018148 14 FVVQNKLQNLAGQHSDVLEKLTPAVRK-RVEVLREIQSEHDEL 55 (360)
Q Consensus 14 ~~l~~~l~~l~~~~~~~~~~Lp~~v~~-rv~aL~~lQ~e~~~l 55 (360)
+.|++++.++-..-.. ..|||+||. ...+|..|+.+++.-
T Consensus 27 s~iK~qiRd~eRlLkk--~~LP~~Vr~e~er~L~~Lk~ql~~~ 67 (199)
T KOG4484|consen 27 SSIKNQIRDLERLLKK--KDLPPEVREELERKLQDLKKQLDNH 67 (199)
T ss_pred HHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567776665532111 579999994 456788887777643
No 25
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=48.29 E-value=92 Score=25.17 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=44.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 018148 32 EKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 86 (360)
Q Consensus 32 ~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~ 86 (360)
..|-+.......++..+...+..++.........+...|..++.-|-+++..++.
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~ 64 (127)
T smart00502 10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLE 64 (127)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555677888888888888888888999999999999999988888884
No 26
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=46.80 E-value=1.6e+02 Score=25.04 Aligned_cols=39 Identities=31% Similarity=0.522 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148 50 SEHDELEAKFFE---ERAALEAKYQKLYQPMYTKRYEIVNGV 88 (360)
Q Consensus 50 ~e~~~le~kf~~---e~~~LE~kY~k~~~Ply~kR~eII~G~ 88 (360)
.++..|..+|.. +...++.+|...++-...++..|+++.
T Consensus 88 ~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~ 129 (151)
T cd00179 88 TQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGE 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444455555533 456788899999999999999999654
No 27
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=45.69 E-value=77 Score=29.86 Aligned_cols=62 Identities=10% Similarity=0.260 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018148 9 TEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKL 73 (360)
Q Consensus 9 ~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~ 73 (360)
...+...|...|..+.+...+.+...-..... .+..|+.++..++.++......|..+|.++
T Consensus 169 ~~Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~---~~~~~~~~i~~~~~rl~~~~~~l~~qf~~m 230 (239)
T PF07195_consen 169 TSGIATRLNDYLDSYTGSSTGSITSRIDSLNS---QIKSLDKQIEDLEERLESKEERLRKQFSAM 230 (239)
T ss_pred cccHHHHHHHHHHHHhCCCCcchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888887666776655555543 356667777777777766666666666544
No 28
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=45.51 E-value=13 Score=41.34 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=6.7
Q ss_pred eCCCCCcccc
Q 018148 160 FDPNPYFKNS 169 (360)
Q Consensus 160 F~~NpYF~N~ 169 (360)
++.||-|-|.
T Consensus 692 r~R~P~f~nA 701 (988)
T KOG2038|consen 692 RKRNPLFCNA 701 (988)
T ss_pred ccCCccccCC
Confidence 3568878764
No 29
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=43.49 E-value=65 Score=31.90 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=12.8
Q ss_pred cchhhHHhhccccccEEEE
Q 018148 129 ITERDEGALKFLKDIKWFR 147 (360)
Q Consensus 129 I~e~De~~LkyL~DI~ve~ 147 (360)
+.++|..|=+|..||.+..
T Consensus 140 L~ekDkGiQKYFvDINiQN 158 (305)
T PF15290_consen 140 LAEKDKGIQKYFVDINIQN 158 (305)
T ss_pred hchhhhhHHHHHhhhhhhH
Confidence 4466777777777776653
No 30
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=43.19 E-value=7.9 Score=42.76 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred ceEEEEEeCCCCC
Q 018148 153 GFKLEFYFDPNPY 165 (360)
Q Consensus 153 gFkL~F~F~~NpY 165 (360)
.+.-.|+|..-.|
T Consensus 263 ~~~~~i~~~~t~y 275 (713)
T PF03344_consen 263 VIEQPIHFRGTRY 275 (713)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 4445555554333
No 31
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=43.14 E-value=8 Score=43.16 Aligned_cols=7 Identities=0% Similarity=-0.078 Sum_probs=3.0
Q ss_pred ccccccc
Q 018148 228 SFFNFFN 234 (360)
Q Consensus 228 SFFnfF~ 234 (360)
.+|.+|.
T Consensus 588 YLl~st~ 594 (787)
T PF03115_consen 588 YLLQSTT 594 (787)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 3444433
No 32
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.20 E-value=1.3e+02 Score=24.28 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=27.1
Q ss_pred chhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018148 28 SDVLEKLTPAVRKRVEVLREIQSEHDELEAK 58 (360)
Q Consensus 28 ~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~k 58 (360)
-+.++.|-.+|++.|+.+.-||.+++.|..+
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKek 33 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999766
No 33
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=38.62 E-value=19 Score=40.19 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=5.9
Q ss_pred eeeeeecCCCCC
Q 018148 190 GTEIEWYPGKCL 201 (360)
Q Consensus 190 gt~I~WK~GKnl 201 (360)
+-+..|+.|..+
T Consensus 757 PK~~t~~~Gt~i 768 (988)
T KOG2038|consen 757 PKQVTKARGTSI 768 (988)
T ss_pred cccccccCCccc
Confidence 334455555543
No 34
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=38.28 E-value=1.1e+02 Score=34.96 Aligned_cols=84 Identities=8% Similarity=0.139 Sum_probs=54.8
Q ss_pred ccccCCHHHHHHH-HHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018148 4 FFDCLTEESFFVV-QNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRY 82 (360)
Q Consensus 4 ~~~~~~~~~~~~l-~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~ 82 (360)
||=+|.-.|+... ..++..+... .+.-+..|-.-+..-.++...|...+..+-...+.+++...=-+.+++-+|..|+
T Consensus 586 f~lSlED~Lmr~fg~~~~~~~~~~-~~~~e~~~I~~~~i~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~ 664 (913)
T PRK13103 586 FYLSLEDSLMRIFASDRVKNFMKA-LGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRN 664 (913)
T ss_pred EEEEcCcHHHHhhCcHHHHHHHHH-cCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777655 2333333211 0000111111122346788889999998888888888888888899999999999
Q ss_pred HHhhcc
Q 018148 83 EIVNGV 88 (360)
Q Consensus 83 eII~G~ 88 (360)
.|+.|.
T Consensus 665 ~iL~~~ 670 (913)
T PRK13103 665 SLLAAE 670 (913)
T ss_pred HHHccC
Confidence 999764
No 35
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=38.23 E-value=1.5e+02 Score=24.01 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=31.5
Q ss_pred HHHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018148 15 VVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKR 81 (360)
Q Consensus 15 ~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR 81 (360)
+|..-|+.-++.....-..+|++++.-+..+..+..++.. ||.+-..+|.-+|.+|
T Consensus 33 aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~-----------LE~~v~~L~~~l~~q~ 88 (88)
T PF14389_consen 33 ALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAK-----------LEQKVLSLYRQLFQQR 88 (88)
T ss_pred HHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcC
Confidence 4444444444443333367898887776666665555554 4555555666566543
No 36
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.44 E-value=1.4e+02 Score=23.18 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018148 10 EESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAK 69 (360)
Q Consensus 10 ~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~k 69 (360)
...+.+|+++|..++...+.+-..+-.=.+.|=.++..|+..+..+. ++..++-.|+++
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~-~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENN-KLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45688999999999876554422222223355555666666555543 445555555554
No 37
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.14 E-value=2.1e+02 Score=25.35 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Q 018148 61 EERAALEAKYQKLYQPMYTKRYEIV 85 (360)
Q Consensus 61 ~e~~~LE~kY~k~~~Ply~kR~eII 85 (360)
.++..+...| ..+.-.|.+|+.|.
T Consensus 145 ee~~~~~~~~-~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 145 EEKEKLEKEY-KKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 3566666666 56667788887775
No 38
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=35.80 E-value=12 Score=41.35 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=0.0
Q ss_pred cccccccc
Q 018148 228 SFFNFFNP 235 (360)
Q Consensus 228 SFFnfF~~ 235 (360)
.|=.+|..
T Consensus 347 ~~~~~lt~ 354 (713)
T PF03344_consen 347 NFGCHLTD 354 (713)
T ss_dssp --------
T ss_pred cccccccc
Confidence 44445544
No 39
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.22 E-value=1.1e+02 Score=27.20 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=11.5
Q ss_pred hhhhcCCHHHHHHHHHH
Q 018148 29 DVLEKLTPAVRKRVEVL 45 (360)
Q Consensus 29 ~~~~~Lp~~v~~rv~aL 45 (360)
.+...|+|+.+..++.|
T Consensus 39 ~~~~~LT~EQQa~~q~I 55 (143)
T PRK11546 39 QNAAPLTTEQQAAWQKI 55 (143)
T ss_pred cccccCCHHHHHHHHHH
Confidence 36778999996554433
No 40
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=33.91 E-value=2.1e+02 Score=21.97 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 018148 57 AKFFEERAALEAKYQKLYQPMYTK 80 (360)
Q Consensus 57 ~kf~~e~~~LE~kY~k~~~Ply~k 80 (360)
..|.+++.++|..|.+.+.-|-.+
T Consensus 29 ~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 29 KKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999988776
No 41
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.83 E-value=2.8e+02 Score=27.26 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=16.8
Q ss_pred CCCccHHHHHhcChhhhhccch
Q 018148 110 GVPDFWLTAMKNNDVLSEEITE 131 (360)
Q Consensus 110 gIP~FWl~vL~n~~~ls~~I~e 131 (360)
|=-.+++.|+.++.-|+++|+.
T Consensus 114 G~~t~Yidvil~SkSfsD~IsR 135 (265)
T COG3883 114 GTATSYIDVILNSKSFSDLISR 135 (265)
T ss_pred CChhHHHHHHHccCcHHHHHHH
Confidence 4455689999999888888763
No 42
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.02 E-value=2.5e+02 Score=22.30 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=27.1
Q ss_pred chhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018148 28 SDVLEKLTPAVRKRVEVLREIQSEHDELEAKF 59 (360)
Q Consensus 28 ~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf 59 (360)
-++++.|..+|++.|.-+.-||.+++.|..+-
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEkn 34 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999999999999999886554
No 43
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=32.67 E-value=12 Score=25.98 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.2
Q ss_pred ceeeeeeecCCCCCc
Q 018148 188 AIGTEIEWYPGKCLT 202 (360)
Q Consensus 188 ~~gt~I~WK~GKnlT 202 (360)
-..|+.+|++|.++-
T Consensus 9 ~v~tPanW~pGd~~i 23 (40)
T PF10417_consen 9 GVATPANWKPGDDVI 23 (40)
T ss_dssp SSBBCTTTCTTSGEB
T ss_pred CcccCcCCCCCCCeE
Confidence 458999999998764
No 44
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=32.22 E-value=49 Score=33.59 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018148 43 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKR 81 (360)
Q Consensus 43 ~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR 81 (360)
-.|..||..+-.|.-.+.+++.+|+.+|..+++|||+.-
T Consensus 454 ~~~e~Lq~rl~alDpmme~eieelrq~y~skrqpIldai 492 (502)
T KOG0574|consen 454 ITLEELQMRLKALDPMMEREIEELRQRYTSKRQPILDAI 492 (502)
T ss_pred ccHHHHHHHHHhcCHHHHHHHHHHHHHHhhccccHHHHh
Confidence 347788888999999999999999999999999999753
No 45
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=32.02 E-value=46 Score=33.65 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=4.6
Q ss_pred cccccccccc
Q 018148 225 ECESFFNFFN 234 (360)
Q Consensus 225 ~~~SFFnfF~ 234 (360)
+--.||+=-.
T Consensus 222 SFFnfF~p~~ 231 (337)
T PTZ00007 222 SFFNFFTSHE 231 (337)
T ss_pred ChHHhcCCCC
Confidence 3445555444
No 46
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.44 E-value=2.6e+02 Score=21.95 Aligned_cols=45 Identities=31% Similarity=0.488 Sum_probs=30.3
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 018148 30 VLEKLTPAVRKRVEVLREIQSEHDELEAK---FFEERAALEAKYQKLY 74 (360)
Q Consensus 30 ~~~~Lp~~v~~rv~aL~~lQ~e~~~le~k---f~~e~~~LE~kY~k~~ 74 (360)
.++.|-.+|.+.|+.+..||.++..|..+ ...+...|+....++.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888765 3344555555554443
No 47
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=30.84 E-value=39 Score=37.73 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018148 40 KRVEVLREIQSEHDELEAK 58 (360)
Q Consensus 40 ~rv~aL~~lQ~e~~~le~k 58 (360)
.+...++.+|.++...+++
T Consensus 566 ~~f~~ik~l~k~~~~re~e 584 (960)
T KOG1189|consen 566 EAFRQIKELQKRFKSREAE 584 (960)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3455566666666555443
No 48
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=30.80 E-value=1e+02 Score=24.65 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=21.7
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 018148 29 DVLEKLTPAVRKRVEVLREIQSEHDELE 56 (360)
Q Consensus 29 ~~~~~Lp~~v~~rv~aL~~lQ~e~~~le 56 (360)
+.+++||.++++.+.-++.+-.+...+.
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~~ 35 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDLL 35 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHHH
Confidence 3578899999999988888877755443
No 49
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=30.37 E-value=42 Score=35.60 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=14.4
Q ss_pred ccccccc--cccccchhhhccc
Q 018148 263 IGSTIRD--KIIPHAVSWFTGE 282 (360)
Q Consensus 263 Ig~~ikd--~IiP~Av~yftGe 282 (360)
.|.+|+. -+.|.++.-|+|.
T Consensus 163 k~mil~~~gmLlPCg~D~F~Gv 184 (615)
T KOG3540|consen 163 KGMILHSYGMLLPCGLDMFRGV 184 (615)
T ss_pred CCeeeecccceeccccccccCc
Confidence 3555543 4789999999993
No 50
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=29.88 E-value=1.8e+02 Score=22.27 Aligned_cols=30 Identities=40% Similarity=0.547 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 018148 57 AKFFEERAALEAKYQKLYQPMYTKRYEIVN 86 (360)
Q Consensus 57 ~kf~~e~~~LE~kY~k~~~Ply~kR~eII~ 86 (360)
..|.+++..||..|.+.+.-|..+=.....
T Consensus 29 ~~~~keRa~lE~~Yak~L~kl~~~~~~~~~ 58 (91)
T PF00611_consen 29 ASFFKERASLEEEYAKSLQKLAKKFKKKMK 58 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 367788888888888888777777666663
No 51
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=29.60 E-value=1.8e+02 Score=33.18 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 018148 41 RVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNG 87 (360)
Q Consensus 41 rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G 87 (360)
-..++...|...+...-...+.+++...-.+.+++-+|..|+.|+.|
T Consensus 662 ~~~~i~~aQ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~ 708 (870)
T CHL00122 662 LSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILES 708 (870)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45678889999999988888888888888899999999999999965
No 52
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=29.27 E-value=25 Score=39.18 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=8.0
Q ss_pred EEEEeCCCCCcccce
Q 018148 156 LEFYFDPNPYFKNSV 170 (360)
Q Consensus 156 L~F~F~~NpYF~N~v 170 (360)
+.++|.-|+|=-|.|
T Consensus 687 ~~Is~tn~~yn~~~v 701 (911)
T PF05086_consen 687 LNISITNTAYNANRV 701 (911)
T ss_pred EEEEEecccccceee
Confidence 555555555544443
No 53
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=28.24 E-value=3.2e+02 Score=22.03 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018148 9 TEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYT 79 (360)
Q Consensus 9 ~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~ 79 (360)
+|+-+.+|+..+- .+.|++.|+..+.| |+.+|..++..-..+..=++.+-.-+..++.-+|.
T Consensus 16 dPe~fe~lr~~~~------ee~I~~a~~~~q~r---L~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~ 77 (83)
T PF11333_consen 16 DPEAFEQLRQELI------EEMIESAPEEMQPR---LRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYK 77 (83)
T ss_pred CHHHHHHHHHHHH------HHHHHhCCHHHHHH---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 4666666665432 34689999999977 55566666665554433333333333333333333
No 54
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=27.83 E-value=1.3e+02 Score=24.97 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Q 018148 34 LTPAVRKRVEVLREIQSEHDELEAKF-----------FEERAALEAKYQKLYQ 75 (360)
Q Consensus 34 Lp~~v~~rv~aL~~lQ~e~~~le~kf-----------~~e~~~LE~kY~k~~~ 75 (360)
-++.+..-...|..|+.+++.++... .+++..|+.+|+++|+
T Consensus 51 d~~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~r 103 (103)
T PF07361_consen 51 DSAEVKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKFR 103 (103)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhcC
Confidence 44555567788888888888877644 4567778888887764
No 55
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=27.79 E-value=2e+02 Score=32.95 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148 41 RVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 88 (360)
Q Consensus 41 rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~ 88 (360)
.-.++...|.+.+..+-...+.+++...=-+.+++-+|..|+.|+.|.
T Consensus 569 i~~~ie~AQkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~~ 616 (925)
T PRK12903 569 FSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIAD 616 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356788889999988888888888877778899999999999999764
No 56
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.76 E-value=3.1e+02 Score=30.84 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHhhhccCCchhhhcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018148 9 TEESFFVVQNKLQNLAGQHSDVLEKLTPA---VRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 85 (360)
Q Consensus 9 ~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~---v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII 85 (360)
.+.+++..+..+..-...-...|+.|... ..++...|..+..+...+..++.++...|+.+..+..+....+-+++|
T Consensus 500 p~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l 579 (782)
T PRK00409 500 PENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAI 579 (782)
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333222222334444332 234455555555666666666666666666666666666666666665
No 57
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=25.47 E-value=52 Score=31.04 Aligned_cols=7 Identities=43% Similarity=1.170 Sum_probs=3.0
Q ss_pred CCCcccc
Q 018148 163 NPYFKNS 169 (360)
Q Consensus 163 NpYF~N~ 169 (360)
=|||+-.
T Consensus 68 sPyy~~~ 74 (233)
T PF11705_consen 68 SPYYTES 74 (233)
T ss_pred CCCcccc
Confidence 3444443
No 58
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=25.42 E-value=54 Score=36.08 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=17.4
Q ss_pred hhccchhhHHhh-ccccccEEEEeC----CCCceEEEEEeC
Q 018148 126 SEEITERDEGAL-KFLKDIKWFRID----DPKGFKLEFYFD 161 (360)
Q Consensus 126 s~~I~e~De~~L-kyL~DI~ve~~e----d~~gFkL~F~F~ 161 (360)
.++++-.+.+.+ --|.+|.+..++ .-+.|-+.|.|.
T Consensus 820 dCLVqL~e~Pf~VitLeevEi~~lERVqfglKnfD~vFi~~ 860 (1001)
T COG5406 820 DCLVQLDEAPFFVITLEEVEIVNLERVQFGLKNFDVVFILR 860 (1001)
T ss_pred hheeeccCCceEEEEecceeEEeeeeEEeecccceEEEEec
Confidence 344444444433 355566555443 123566666664
No 59
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=24.73 E-value=1.1e+02 Score=25.69 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=25.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHH
Q 018148 31 LEKLTPAVRKRVEVLREIQSEHDE--L-EAKFFEERAALEAKYQK 72 (360)
Q Consensus 31 ~~~Lp~~v~~rv~aL~~lQ~e~~~--l-e~kf~~e~~~LE~kY~k 72 (360)
+..||+.||.+ |+.|..++.. | +.-|.+++.+|=..|..
T Consensus 2 ~s~LP~evq~~---L~~L~~el~~GdiT~KGY~kkr~~LL~~yl~ 43 (111)
T PF06464_consen 2 PSSLPPEVQNR---LQELDLELEEGDITQKGYEKKRSKLLAPYLP 43 (111)
T ss_pred cccCCHHHHHH---HHHHHHhhhcCcchHHHHHHHHHHHHHHHHh
Confidence 46799999976 5555555554 4 34455666766666643
No 60
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=24.20 E-value=2.6e+02 Score=32.13 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148 42 VEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 88 (360)
Q Consensus 42 v~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~ 88 (360)
-.++...|...+..+-...+.+++...=-+.+++-+|.+|+.|+.|.
T Consensus 624 ~~~i~~aQ~~vE~~~~~~Rk~ll~yD~V~n~QR~vIY~~R~~iL~~~ 670 (908)
T PRK13107 624 SRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDAE 670 (908)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46678889999988888888888888888899999999999999654
No 61
>PRK01546 hypothetical protein; Provisional
Probab=23.97 E-value=1.2e+02 Score=24.39 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018148 34 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 78 (360)
Q Consensus 34 Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply 78 (360)
++..+..||..|.+.+.. ..|...=..|...|+..|-..++--+
T Consensus 2 ~~~~~i~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 45 (79)
T PRK01546 2 LSHELVERINFLAKKAKA-EGLTEEEQRERQSLREQYLKGFRQNM 45 (79)
T ss_pred CcHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999988875 66666667788889999966655433
No 62
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=23.90 E-value=3.6e+02 Score=27.22 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHhhhccCCchh------------------------------hhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 018148 8 LTEESFFVVQNKLQNLAGQHSDV------------------------------LEKLTPAVRKRVEVLREIQSEHDELEA 57 (360)
Q Consensus 8 ~~~~~~~~l~~~l~~l~~~~~~~------------------------------~~~Lp~~v~~rv~aL~~lQ~e~~~le~ 57 (360)
|.+..+..+..||++++|.-..+ .++|| .+-+|+.+|+.|+.+..
T Consensus 240 l~~~~ld~vEqRL~s~lgK~~~IaEk~~~s~~Da~~d~KV~elye~~qrw~pi~stLP-~~V~rl~al~~LHeqa~---- 314 (371)
T KOG3958|consen 240 LDLAVLDQVEQRLQSVLGKVNEIAEKHKASVEDADTDSKVHELYETIQRWSPIASTLP-ELVQRLVALKQLHEQAM---- 314 (371)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHhhhhHHHhhH-HHHHHHHHHHHHHHHHH----
Confidence 56667777777888777542221 22344 34457777777765543
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018148 58 KFFEERAALEAKYQKLYQPMYTKRYEIV 85 (360)
Q Consensus 58 kf~~e~~~LE~kY~k~~~Ply~kR~eII 85 (360)
+|..-+..|+..-...-..|-+-|--|+
T Consensus 315 ~Fa~~lthl~t~q~~i~~sl~~n~ell~ 342 (371)
T KOG3958|consen 315 QFAQLLTHLDTTQQMIANSLKDNTELLT 342 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4555555555555544444444444443
No 63
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.73 E-value=47 Score=37.95 Aligned_cols=14 Identities=7% Similarity=-0.173 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhc
Q 018148 11 ESFFVVQNKLQNLA 24 (360)
Q Consensus 11 ~~~~~l~~~l~~l~ 24 (360)
++.+|+..-.++|-
T Consensus 499 ~l~~ale~t~~~l~ 512 (1010)
T KOG1991|consen 499 NLSEALELTHNCLL 512 (1010)
T ss_pred HHHHHHHHHHHHhc
Confidence 44555555555544
No 64
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=23.66 E-value=2.6e+02 Score=29.24 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018148 11 ESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKY 70 (360)
Q Consensus 11 ~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY 70 (360)
.++..|...|..+++. .+.+....... -..++.|+.+++.++.++.....+|.++|
T Consensus 385 G~~~~l~~~l~~~~~~-~G~l~~~~~~l---~~~i~~l~~~i~~~~~rl~~~e~rl~~qF 440 (462)
T PRK08032 385 GITTQIATNLKSWLST-TGIIKTATDGV---NKTLKKLTKQYNAVSDSIDATIARYKAQF 440 (462)
T ss_pred cHHHHHHHHHHHHHcC-CccchhHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666653 35443322222 23355566666666666655555555554
No 65
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=23.65 E-value=40 Score=37.65 Aligned_cols=12 Identities=8% Similarity=0.503 Sum_probs=5.6
Q ss_pred CcccceEEEEEe
Q 018148 165 YFKNSVLTKTYH 176 (360)
Q Consensus 165 YF~N~vLtK~y~ 176 (360)
|+-.+-+.+-|.
T Consensus 733 Y~g~Tr~IrafF 744 (911)
T PF05086_consen 733 YMGKTRVIRAFF 744 (911)
T ss_pred HcCCceEEEEEe
Confidence 444444444443
No 66
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.56 E-value=46 Score=38.01 Aligned_cols=9 Identities=33% Similarity=0.881 Sum_probs=4.6
Q ss_pred ccccc-cccc
Q 018148 227 ESFFN-FFNP 235 (360)
Q Consensus 227 ~SFFn-fF~~ 235 (360)
.+||. ||..
T Consensus 817 ~~ff~~wf~~ 826 (1010)
T KOG1991|consen 817 NNFFTLWFQF 826 (1010)
T ss_pred ccHHHHHHHH
Confidence 35554 6653
No 67
>PF15463 ECM11: Extracellular mutant protein 11
Probab=23.39 E-value=4.6e+02 Score=22.76 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=46.4
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148 29 DVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 88 (360)
Q Consensus 29 ~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~ 88 (360)
.+..+|+-.. -..+...+..++..|-.++...+.++...+ +.+.-...+|.+.|.+.
T Consensus 64 ~~fs~ls~~e--We~~Gd~~l~qf~~l~~kl~~~R~~~r~~~-~~fe~eI~~R~eav~~~ 120 (139)
T PF15463_consen 64 EFFSNLSFDE--WEEAGDWFLEQFSELMQKLKEARRKLRKKF-AVFEDEINRRAEAVRAQ 120 (139)
T ss_pred HHHhcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4667777654 478889999999999999999999888888 67778888999988654
No 68
>PRK14082 hypothetical protein; Provisional
Probab=23.37 E-value=1e+02 Score=23.92 Aligned_cols=8 Identities=50% Similarity=1.257 Sum_probs=6.7
Q ss_pred cCCCccHH
Q 018148 109 KGVPDFWL 116 (360)
Q Consensus 109 kgIP~FWl 116 (360)
..+|+||-
T Consensus 55 ~e~PGF~e 62 (65)
T PRK14082 55 QEVPGFWE 62 (65)
T ss_pred ccCCcHHH
Confidence 57899995
No 69
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.33 E-value=3.6e+02 Score=30.28 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018148 41 RVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 85 (360)
Q Consensus 41 rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII 85 (360)
....+..+..+...+..++.++..+|+.+..+..+....+-+++|
T Consensus 530 ~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~ 574 (771)
T TIGR01069 530 KNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEAL 574 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555
No 70
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=23.28 E-value=2.7e+02 Score=32.01 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148 42 VEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 88 (360)
Q Consensus 42 v~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~ 88 (360)
-.++...|...+..+-...+.+++...=-+.+++-+|..|+.|+.|.
T Consensus 620 ~~~i~~aQ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~~ 666 (896)
T PRK13104 620 TRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAMT 666 (896)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46678889999988888888888888888899999999999999654
No 71
>PRK06798 fliD flagellar capping protein; Validated
Probab=23.15 E-value=2.6e+02 Score=29.18 Aligned_cols=57 Identities=9% Similarity=0.171 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018148 11 ESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQ 71 (360)
Q Consensus 11 ~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~ 71 (360)
.+...|...|..+++ ..+.| ......--..++.|+.++..++.++.+...+|.++|.
T Consensus 358 Gia~~l~~~l~~~~~-~~G~i---~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ 414 (440)
T PRK06798 358 GLGKEMEKSLDKIFG-DEGII---GERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQ 414 (440)
T ss_pred cHHHHHHHHHHhhhC-CCcee---ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777665 23443 3333222344556666667666666555555555554
No 72
>PRK02539 hypothetical protein; Provisional
Probab=22.56 E-value=1.5e+02 Score=24.31 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018148 34 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 78 (360)
Q Consensus 34 Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply 78 (360)
++..+..||..|...+.. ..|..+-..|..+|+..|-+.++-=+
T Consensus 1 M~~~~I~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 44 (85)
T PRK02539 1 MDPKKIARINELAKKKKT-EGLTGEEKVEQAKLREEYIEGYRRSV 44 (85)
T ss_pred CCHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999888876 56666667788889999866554433
No 73
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.55 E-value=3.1e+02 Score=29.72 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHhhhccC---CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018148 9 TEESFFVVQNKLQNLAGQ---HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 85 (360)
Q Consensus 9 ~~~~~~~l~~~l~~l~~~---~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII 85 (360)
.|+-++.+..||..|-+. +...++.|+....+....|..|...-..+ ..+..++..+..+|.+.-+-|-..|+..-
T Consensus 295 Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~-~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A 373 (557)
T COG0497 295 DPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESL-EALEKEVKKLKAELLEAAEALSAIRKKAA 373 (557)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788887776655543 33334555555444444444444443333 35667788888889888888888888877
No 74
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.30 E-value=5.6e+02 Score=25.52 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 018148 34 LTPAVRKRVEVLREIQSEHD 53 (360)
Q Consensus 34 Lp~~v~~rv~aL~~lQ~e~~ 53 (360)
|-.++.+|-..|..+++.+.
T Consensus 138 L~~Kierrk~ElEr~rkRle 157 (338)
T KOG3647|consen 138 LGSKIERRKAELERTRKRLE 157 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34443333333333333333
No 75
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.14 E-value=62 Score=30.09 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhHHH
Q 018148 64 AALEAKYQKLYQPMY 78 (360)
Q Consensus 64 ~~LE~kY~k~~~Ply 78 (360)
.+-.+|| .+|+||-
T Consensus 52 ieWk~KY-~KYKpLt 65 (227)
T KOG3241|consen 52 IEWKRKY-GKYKPLT 65 (227)
T ss_pred HHHHHHh-ccccccc
Confidence 3444555 4555554
No 76
>PRK10780 periplasmic chaperone; Provisional
Probab=21.65 E-value=5.5e+02 Score=22.69 Aligned_cols=17 Identities=12% Similarity=0.086 Sum_probs=7.8
Q ss_pred HHHHHHhHHHHHHHHHh
Q 018148 69 KYQKLYQPMYTKRYEIV 85 (360)
Q Consensus 69 kY~k~~~Ply~kR~eII 85 (360)
+.+.+.+||+.+-...|
T Consensus 113 ~~~e~~~~i~~ki~~ai 129 (165)
T PRK10780 113 RSNEERNKILTRIQTAV 129 (165)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344455555444444
No 77
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=21.63 E-value=1.2e+02 Score=27.48 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhh
Q 018148 64 AALEAKYQKLYQPMYTKRYEIVN 86 (360)
Q Consensus 64 ~~LE~kY~k~~~Ply~kR~eII~ 86 (360)
-+|...|.+.+..+..+|.+|..
T Consensus 83 ~eL~~~~~raHe~~lkkR~~i~~ 105 (167)
T COG1507 83 EELRAFYRRAHESYLKKRDAIEP 105 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 47889999999999999999983
No 78
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.52 E-value=1.7e+02 Score=22.12 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018148 58 KFFEERAALEAKYQKLYQPMYTKRYEI 84 (360)
Q Consensus 58 kf~~e~~~LE~kY~k~~~Ply~kR~eI 84 (360)
.....+..|...|..+...+-.++..+
T Consensus 77 ~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 77 EIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 345566677777777777777766654
No 79
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.45 E-value=2.6e+02 Score=24.23 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=22.9
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 018148 31 LEKLTPAVRKRVEVLREIQSEHDELEA 57 (360)
Q Consensus 31 ~~~Lp~~v~~rv~aL~~lQ~e~~~le~ 57 (360)
|..|||.++..+..++.||.++..+-.
T Consensus 1 ~~~lpp~~q~~l~q~QqLq~ql~~~~~ 27 (119)
T COG1382 1 MEQLPPEVQAQLAQLQQLQQQLQKVIL 27 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999887643
No 80
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.25 E-value=2.8e+02 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018148 47 EIQSEHDELEAKFFEERAALEAK 69 (360)
Q Consensus 47 ~lQ~e~~~le~kf~~e~~~LE~k 69 (360)
.|...|.++..+|..|+..|...
T Consensus 50 eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 50 ELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555566555554
No 81
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=20.94 E-value=4.9e+02 Score=29.71 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148 42 VEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 88 (360)
Q Consensus 42 v~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~ 88 (360)
-.++...|...+...-...+.+++...=-+.+++-+|..|+.|+.|.
T Consensus 606 ~~~i~~aQ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~~ 652 (830)
T PRK12904 606 TRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEGE 652 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46788889999999888888888888888899999999999999654
No 82
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=20.86 E-value=58 Score=32.16 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=9.0
Q ss_pred ccccchhhhcccc
Q 018148 271 IIPHAVSWFTGEA 283 (360)
Q Consensus 271 IiP~Av~yftGea 283 (360)
++|-+|..+.|..
T Consensus 14 ~~p~~l~~~~~~~ 26 (285)
T PF03896_consen 14 VFPATLLSFGGGS 26 (285)
T ss_pred HHHHHHHccCCCC
Confidence 5777888777633
No 83
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=20.78 E-value=3.5e+02 Score=31.17 Aligned_cols=50 Identities=10% Similarity=0.140 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148 39 RKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 88 (360)
Q Consensus 39 ~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~ 88 (360)
+..-.+|...|.+.+..+-...+.+++...=-+.+++-+|..|+.|+.|.
T Consensus 718 ~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~~ 767 (939)
T PRK12902 718 GMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEGR 767 (939)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33457788999999998888888888888888899999999999999654
No 84
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=20.22 E-value=6e+02 Score=22.34 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhccCCchhh------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018148 12 SFFVVQNKLQNLAGQHSDVL------EKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 85 (360)
Q Consensus 12 ~~~~l~~~l~~l~~~~~~~~------~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII 85 (360)
.+..|+.++..+-|.+++.+ +.||... -..-|+.|..+...|+.+...--..|++.- +.|.-..+.|+..+
T Consensus 23 qi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~--l~~llkqLEkeK~~Le~qlk~~e~rLeQEs-KAyhk~ndeRr~yl 99 (129)
T PF15372_consen 23 QIIILREKIEKIRGNPSDRLSSIRRYEQMSVES--LNQLLKQLEKEKRSLENQLKDYEWRLEQES-KAYHKANDERRQYL 99 (129)
T ss_pred HHHHHHHHHHHHhCCCccccHHHHHHhhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 35667889999999988876 6676533 345577777777778777766666666664 56666777777777
Q ss_pred h
Q 018148 86 N 86 (360)
Q Consensus 86 ~ 86 (360)
+
T Consensus 100 a 100 (129)
T PF15372_consen 100 A 100 (129)
T ss_pred H
Confidence 4
No 85
>PLN02939 transferase, transferring glycosyl groups
Probab=20.15 E-value=6.4e+02 Score=29.36 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=7.9
Q ss_pred CCC-ccHHHHHhcC
Q 018148 110 GVP-DFWLTAMKNN 122 (360)
Q Consensus 110 gIP-~FWl~vL~n~ 122 (360)
..| .||...|..-
T Consensus 410 ~~~~~~~~~lll~i 423 (977)
T PLN02939 410 DMPSEFWSRILLLI 423 (977)
T ss_pred hCCHHHHHHHHHHH
Confidence 445 6997666543
Done!