Query 018148
Match_columns 360
No_of_seqs 199 out of 670
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayu_A Nucleosome assembly pro 100.0 4.4E-87 1.5E-91 670.1 13.3 279 8-288 62-369 (417)
2 3fs3_A Nucleosome assembly pro 100.0 8.7E-73 3E-77 554.9 18.5 268 8-288 17-298 (359)
3 2e50_A Protein SET; histone ch 100.0 2.1E-59 7E-64 437.3 17.4 206 25-280 15-221 (225)
4 2zd7_A VPS75, vacuolar protein 100.0 3.3E-60 1.1E-64 452.1 10.2 204 43-287 9-224 (264)
5 3kyp_A Pfnaps, nucleosome asse 100.0 4E-56 1.4E-60 406.5 12.1 188 42-283 2-192 (193)
6 2jo8_A Serine/threonine-protei 94.1 0.22 7.6E-06 35.7 7.3 44 29-81 5-48 (51)
7 2ca6_A RAN GTPase-activating p 90.9 0.055 1.9E-06 51.6 0.7 9 116-124 180-188 (386)
8 2ayu_A Nucleosome assembly pro 85.8 0.17 6E-06 50.7 0.4 22 222-243 308-329 (417)
9 2p2u_A HOST-nuclease inhibitor 75.4 11 0.00036 33.0 8.2 49 38-86 18-66 (171)
10 4fp9_B Mterf domain-containing 74.2 0.64 2.2E-05 45.1 0.0 10 226-235 241-250 (335)
11 2zd7_A VPS75, vacuolar protein 73.6 0.82 2.8E-05 43.0 0.5 45 36-80 9-53 (264)
12 2ke4_A CDC42-interacting prote 56.1 29 0.00099 27.7 6.4 48 29-83 6-53 (98)
13 2jee_A YIIU; FTSZ, septum, coi 50.0 69 0.0023 24.8 7.4 33 27-59 4-36 (81)
14 2zqm_A Prefoldin beta subunit 32.6 87 0.003 24.5 5.9 28 32-59 2-29 (117)
15 2eln_A Zinc finger protein 406 30.5 20 0.00068 23.0 1.4 13 347-359 2-14 (38)
16 3a7p_A Autophagy protein 16; c 30.3 2.5E+02 0.0086 24.1 8.6 51 31-81 84-137 (152)
17 2byk_A Chrac-16; nucleosome sl 27.4 25 0.00087 29.8 1.8 9 270-278 94-102 (140)
18 3g9g_A Suppressor of yeast pro 27.3 1E+02 0.0034 29.1 6.1 47 30-80 35-86 (287)
19 3bhp_A UPF0291 protein YNZC; N 26.8 79 0.0027 23.1 4.1 41 34-75 2-42 (60)
20 2ipc_A Preprotein translocase 23.6 2.6E+02 0.0089 30.9 9.2 45 43-87 732-776 (997)
21 4afl_A P29ING4, inhibitor of g 23.1 1.1E+02 0.0037 23.9 4.8 30 29-58 11-40 (104)
22 3sjb_C Golgi to ER traffic pro 23.0 2.5E+02 0.0087 22.1 6.8 62 23-85 4-73 (93)
23 1nkt_A Preprotein translocase 22.2 3.4E+02 0.012 29.8 9.7 46 43-88 651-696 (922)
24 3vem_A Helicase protein MOM1; 21.1 2E+02 0.0067 23.7 5.9 35 43-77 50-84 (115)
25 1deq_A Fibrinogen (alpha chain 21.1 2.1E+02 0.0072 28.2 7.2 63 12-74 68-133 (390)
26 1fv5_A First zinc finger of U- 20.7 38 0.0013 21.5 1.3 12 348-359 2-13 (36)
27 3jux_A Protein translocase sub 20.2 2E+02 0.0068 31.1 7.3 45 43-87 621-665 (822)
28 2byk_A Chrac-16; nucleosome sl 20.1 22 0.00075 30.2 0.0 11 224-234 83-93 (140)
No 1
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=100.00 E-value=4.4e-87 Score=670.10 Aligned_cols=279 Identities=37% Similarity=0.669 Sum_probs=235.9
Q ss_pred CCHHHHHHHHHHHhhhccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 018148 8 LTEESFFVVQNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNG 87 (360)
Q Consensus 8 ~~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G 87 (360)
.+|.++++|++||++|+|+++++|++||+.||+||.+|++||.++..|+++|++++++|++||+++|+|||++|++||+|
T Consensus 62 ~~p~~~~~~~~~l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G 141 (417)
T 2ayu_A 62 NQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISG 141 (417)
T ss_dssp --------CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHhhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccchhh--------------------hhhhhhccCCCccHHHHHhcChhhhhccchhhHHhhccccccEEEE
Q 018148 88 VVEGAPNEVAMDQE--------------------EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFR 147 (360)
Q Consensus 88 ~~e~~~~E~~~~~~--------------------~~~~~~~kgIP~FWl~vL~n~~~ls~~I~e~De~~LkyL~DI~ve~ 147 (360)
.++|+.+|+.+... ......++|||+||++||+||+.|+.||+++|++||+||+||+|++
T Consensus 142 ~~ept~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~ 221 (417)
T 2ayu_A 142 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEY 221 (417)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCB
T ss_pred CCCCchhhhcccccccchhhhhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEE
Confidence 99999665432110 1112345899999999999999999999999999999999999999
Q ss_pred eCC-CCceEEEEEe--CCCCCcccceEEEEEeeccC----CCcceecceeeeeeecC-CCCCchhhhhcCCC-CCCCCCc
Q 018148 148 IDD-PKGFKLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKKKPK-KGSKNAK 218 (360)
Q Consensus 148 ~ed-~~gFkL~F~F--~~NpYF~N~vLtK~y~~~~~----~~p~~~~~~gt~I~WK~-GKnlT~k~~kKk~k-kg~k~~r 218 (360)
+.+ +.||+|+|+| .+||||+|++|||+|+|... |.+++.+++||+|+||+ |||||+++++||+| |+++++|
T Consensus 222 ~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R 301 (417)
T 2ayu_A 222 LTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVR 301 (417)
T ss_dssp CCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------
T ss_pred ccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCccc
Confidence 875 5699999999 99999999999999999754 34455679999999999 99999999998876 6678899
Q ss_pred ccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccccchhhhccccccccc
Q 018148 219 PITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEE 288 (360)
Q Consensus 219 ~v~k~~~~~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eIg~~ikd~IiP~Av~yftGea~~~dd 288 (360)
+|++++++.||||||+||.+|++++ +++..++++++|+.||+||++||++|||+||.||||+|++.++
T Consensus 302 ~v~k~v~~~SFFnfFspp~~p~~de--de~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~~~e~ 369 (417)
T 2ayu_A 302 TIEKITPIESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEF 369 (417)
T ss_dssp CCEEEEECCCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHHH
T ss_pred ccccCCCCCCceeecCCCCCCCccc--cccchHHHHHHHHHHHHHHHHHHhhccccHHHHhccccccccc
Confidence 9999999999999999999998764 2233456889999999999999999999999999999999865
No 2
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=100.00 E-value=8.7e-73 Score=554.85 Aligned_cols=268 Identities=35% Similarity=0.594 Sum_probs=189.2
Q ss_pred CCHHHHHHHHHHHhhhccCC----chhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018148 8 LTEESFFVVQNKLQNLAGQH----SDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYE 83 (360)
Q Consensus 8 ~~~~~~~~l~~~l~~l~~~~----~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~e 83 (360)
+-.++|.+++..+++|...+ .++|++||+.||+||.+|+.||.+++.|+++|++++++|++||+++++|||+||++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~e 96 (359)
T 3fs3_A 17 EISSLLESIKIGKTSLKYRCFYLYDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRRE 96 (359)
T ss_dssp ----------------------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhhccccchhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34678889999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCcccccchhhhhhhhhccCCCccHHHHHhcChhhhhccchhhHHhhccccccEEEEeC----CCCceEEEEE
Q 018148 84 IVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID----DPKGFKLEFY 159 (360)
Q Consensus 84 II~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWl~vL~n~~~ls~~I~e~De~~LkyL~DI~ve~~e----d~~gFkL~F~ 159 (360)
||+|.++.. ..++|||+||++||+||+.|+.+|+++|+++|+||+||+|+++. .++||+|+|+
T Consensus 97 II~G~~e~e-------------~~~kgIP~FWltvl~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~ 163 (359)
T 3fs3_A 97 ALVGNGEAK-------------IGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFY 163 (359)
T ss_dssp HHHC---CC-------------SSSTTSTTHHHHHHHTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEE
T ss_pred HHcCccccc-------------cccCCCCcHHHHHHHhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEE
Confidence 999975421 23479999999999999999999999999999999999999863 4679999999
Q ss_pred eCCCCCcccceEEEEEeecc---CCCcceecceeeeeeecCCCCCchhhhhcCCC-CCCCCCcccccccccccccccccc
Q 018148 160 FDPNPYFKNSVLTKTYHMID---EDEPILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNP 235 (360)
Q Consensus 160 F~~NpYF~N~vLtK~y~~~~---~~~p~~~~~~gt~I~WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnfF~~ 235 (360)
|.+||||+|++|||+|+|.. .++|++..++||+|+||+|||||+++++||+| |+++.+|+|++++++.||||||+|
T Consensus 164 F~eNpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFsp 243 (359)
T 3fs3_A 164 FATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTS 243 (359)
T ss_dssp ECSCSSBCCSEEEEEEEEC--------CEEEEEECCCCBCTTCCTTCC----------------------CCCGGGGSCC
T ss_pred eCCCCcccCCEEEEEEEEeccCCCCCcccccceeeeeeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCC
Confidence 99999999999999999974 34677778999999999999999999888776 567788999999999999999999
Q ss_pred cCCCCCCC--CCChhHHHHHHHhhhccccccccccccccccchhhhccccccccc
Q 018148 236 PQVPEDDE--DIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEE 288 (360)
Q Consensus 236 ~~~p~d~~--~~ded~~eel~~~l~~D~eIg~~ikd~IiP~Av~yftGea~~~dd 288 (360)
|.+|++++ +++++++++++++|+.||+||++||++|||+||.||||+|+++++
T Consensus 244 p~~p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd~IiP~av~yftGea~e~e~ 298 (359)
T 3fs3_A 244 HKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYYLGIIIESES 298 (359)
T ss_dssp BCC------------CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC-----
T ss_pred CCCCCcccccccchhhhHHHHHHHHHhHHHHHHHHhceecChHHhhCCccccccc
Confidence 99997764 345566788999999999999999999999999999999999874
No 3
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=100.00 E-value=2.1e-59 Score=437.25 Aligned_cols=206 Identities=33% Similarity=0.643 Sum_probs=160.1
Q ss_pred cCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhh
Q 018148 25 GQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDK 104 (360)
Q Consensus 25 ~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~ 104 (360)
|.+.+.+..+++.++++|.+|+.||.+++.|+++|.+++++|+++|+++++|||++|++||
T Consensus 15 ~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII------------------- 75 (225)
T 2e50_A 15 SNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELI------------------- 75 (225)
T ss_dssp C-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-------------------
Confidence 3344677889999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccHHHHHhcChhhhhccchhhHHhhccccccEEEEeCCC-CceEEEEEeCCCCCcccceEEEEEeeccCCCc
Q 018148 105 ATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP-KGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEP 183 (360)
Q Consensus 105 ~~~~kgIP~FWl~vL~n~~~ls~~I~e~De~~LkyL~DI~ve~~ed~-~gFkL~F~F~~NpYF~N~vLtK~y~~~~~~~p 183 (360)
+|||+||++||+||+.|+.+|+++|++||+||+||+|++++++ .||+|+|+|.+||||+|++|||+|+|...|+|
T Consensus 76 ----~~IP~FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~~g~~ 151 (225)
T 2e50_A 76 ----AKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESGDP 151 (225)
T ss_dssp ----TTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-------
T ss_pred ----hccccHHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecCCCCc
Confidence 7999999999999999999999999999999999999998765 59999999999999999999999999887776
Q ss_pred ceecceeeeeeecCCCCCchhhhhcCCCCCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccc
Q 018148 184 ILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDI 263 (360)
Q Consensus 184 ~~~~~~gt~I~WK~GKnlT~k~~kKk~kkg~k~~r~v~k~~~~~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eI 263 (360)
+++||+|+||+|||||+++++|++|+|++ |+ .+++.||||||+++..|+ +++|
T Consensus 152 ---~s~~t~I~Wk~gkd~t~~~~~kk~~~~~~--r~---~~~~~SFF~fF~~~~~~~-------------------~~ei 204 (225)
T 2e50_A 152 ---SSKSTEIKWKSGKDMTKRSSQTQNKASRK--RQ---HEEPESFFTWFTDHSDAG-------------------ADEL 204 (225)
T ss_dssp ---CEEECCCCBCSSCCC---------------------------CGGGGC-------------------------CHHH
T ss_pred ---ccCCCcceecCCCCccchhhhhcccccCc--cc---CCCCCCcceecCCCCCCc-------------------hhHH
Confidence 68999999999999999987766655443 32 246789999999986552 2589
Q ss_pred cccccccccccchhhhc
Q 018148 264 GSTIRDKIIPHAVSWFT 280 (360)
Q Consensus 264 g~~ikd~IiP~Av~yft 280 (360)
|++|+++|||+||.|||
T Consensus 205 ge~ikd~i~P~av~yy~ 221 (225)
T 2e50_A 205 GEVIKDDIWPNPLQYYL 221 (225)
T ss_dssp HHHHHHTTTTCSHHHHC
T ss_pred HHHHHhCccccHHHHhc
Confidence 99999999999999998
No 4
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=100.00 E-value=3.3e-60 Score=452.05 Aligned_cols=204 Identities=18% Similarity=0.301 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhhhhccCCCccHHHHHhcC
Q 018148 43 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNN 122 (360)
Q Consensus 43 ~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWl~vL~n~ 122 (360)
..|+.++.++..|+++|.++.++|+++|.++++|||+||++|| +|||+||++||+||
T Consensus 9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII-----------------------~~IP~FWltal~n~ 65 (264)
T 2zd7_A 9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYI-----------------------DEIAEFWKIVLSQH 65 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------TTCTTHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------------------hcchhHHHHHHHcC
Confidence 5688899999999999999999999999999999999999999 79999999999999
Q ss_pred hhhhhccchhhHHhhccccccEEEEe------CCCCceEEEEEeCC-CCCcccceEEEEEeeccC--C-Ccceecceeee
Q 018148 123 DVLSEEITERDEGALKFLKDIKWFRI------DDPKGFKLEFYFDP-NPYFKNSVLTKTYHMIDE--D-EPILEKAIGTE 192 (360)
Q Consensus 123 ~~ls~~I~e~De~~LkyL~DI~ve~~------ed~~gFkL~F~F~~-NpYF~N~vLtK~y~~~~~--~-~p~~~~~~gt~ 192 (360)
+.|+.+|+++|++||+||+||+|+++ ++++||+|+|+|.+ ||||+|++|||+|+|... + .+.+.+|+||+
T Consensus 66 ~~l~~~I~e~De~iL~~L~dI~v~~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~ 145 (264)
T 2zd7_A 66 VSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVP 145 (264)
T ss_dssp TTGGGGSCGGGHHHHTTEEEEEEEEGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCC
T ss_pred hHHHhhcCHhhHHHHHhcCceEEEEecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecc
Confidence 99999999999999999999999996 56789999999999 999999999999999864 2 24446899999
Q ss_pred eeecCCC-CCchhhhhcCC-CCCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhcccccccccccc
Q 018148 193 IEWYPGK-CLTQKLLKKKP-KKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDK 270 (360)
Q Consensus 193 I~WK~GK-nlT~k~~kKk~-kkg~k~~r~v~k~~~~~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eIg~~ikd~ 270 (360)
|+||+|+ ++|+++++||+ ++|++++|+ ...||||||+++.+|.+. .+..+|+||++|+++
T Consensus 146 I~WK~g~~~~~~~~~~kk~~~~~~~~~r~-----~~~SFF~fF~~~~~~~~~-------------~~~~d~eig~~Ikd~ 207 (264)
T 2zd7_A 146 IEWPQSYDSINPDLIKDKRSPEGKKKYRQ-----GMKTIFGWFRWTGLKPGK-------------EFPHGDSLASLFSEE 207 (264)
T ss_dssp CCCCGGGGGGCTTTCSCSSSHHHHHHHHH-----HHTSHHHHTTCCSSSTTS-------------SSTTHHHHHHHHHHT
T ss_pred cccCCCccccchhhhhhccccccccccCC-----CCCCcceecCCCCCCccc-------------cccCchhHHHHHHhh
Confidence 9999975 66777776553 334333332 357999999999887543 245689999999999
Q ss_pred ccccchhhhcccccccc
Q 018148 271 IIPHAVSWFTGEAIQEE 287 (360)
Q Consensus 271 IiP~Av~yftGea~~~d 287 (360)
|||+||.||||++.+.+
T Consensus 208 I~P~al~yf~g~~~d~~ 224 (264)
T 2zd7_A 208 IYPFCVKYYAEAQRDLE 224 (264)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred hccCHHHHhcccccccc
Confidence 99999999999988753
No 5
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=100.00 E-value=4e-56 Score=406.47 Aligned_cols=188 Identities=21% Similarity=0.442 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhhhhccCCCccHHHHHhc
Q 018148 42 VEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKN 121 (360)
Q Consensus 42 v~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWl~vL~n 121 (360)
+.+|+.||.+++.|++++.+++++|++||+++++|||++|++|| .|||+||++||+|
T Consensus 2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI-----------------------~~IP~FW~t~l~n 58 (193)
T 3kyp_A 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEII-----------------------QKIPGFWANTLRK 58 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HTSTTTTHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHh-----------------------cCCccHHHHHHHc
Confidence 47899999999999999999999999999999999999999999 6999999999999
Q ss_pred ChhhhhccchhhHHhhccccccEEEEeC-CCCceEEEEEeCC--CCCcccceEEEEEeeccCCCcceecceeeeeeecCC
Q 018148 122 NDVLSEEITERDEGALKFLKDIKWFRID-DPKGFKLEFYFDP--NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPG 198 (360)
Q Consensus 122 ~~~ls~~I~e~De~~LkyL~DI~ve~~e-d~~gFkL~F~F~~--NpYF~N~vLtK~y~~~~~~~p~~~~~~gt~I~WK~G 198 (360)
|+.++.++ ++|+++|+||+||+|++.. .+.||+|+|+|++ ||||+|++|||+|++..++.++ +++|+|+||+|
T Consensus 59 ~~~ls~i~-~~De~~L~~L~di~v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~~g~~~---~~~t~I~Wk~g 134 (193)
T 3kyp_A 59 HPALSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQEKV---VECTRIKWKEG 134 (193)
T ss_dssp SSSSTTSS-CHHHHTTCCCCEECCBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC----CC---CCCCCCCCCSS
T ss_pred CchHHHHH-HhhHHHHcCcceEEEEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcCCCCee---eccceeeeecC
Confidence 99999865 7999999999999999864 4569999999998 8999999999999998877664 68999999999
Q ss_pred CCCchhhhhcCCCCCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccccchhh
Q 018148 199 KCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSW 278 (360)
Q Consensus 199 KnlT~k~~kKk~kkg~k~~r~v~k~~~~~SFFnfF~~~~~p~d~~~~ded~~eel~~~l~~D~eIg~~ikd~IiP~Av~y 278 (360)
||||+++.+|++ ++++++++.||||||+++..|+ |++||++|+++|||+||.|
T Consensus 135 k~~t~~~~~kr~--------~~~~~~~~~SFF~wF~~~~~~~-------------------~~eige~ikd~i~P~~l~y 187 (193)
T 3kyp_A 135 KNPIAAVTHNRS--------DLDNEIPKWSIFEWFTTDELQD-------------------KPDVGELIRREIWHNPLSY 187 (193)
T ss_dssp CCCCC----------------------CCCTTTTCCSSCCTT-------------------TTCTTHHHHTTTTTCHHHH
T ss_pred CCcchhhhhccc--------cccccCCcchHhhhcCCCCcCC-------------------chHHHHHHHhCeeeCHHHH
Confidence 999987654322 3456678999999999987663 4589999999999999999
Q ss_pred hcccc
Q 018148 279 FTGEA 283 (360)
Q Consensus 279 ftGea 283 (360)
||||.
T Consensus 188 y~ge~ 192 (193)
T 3kyp_A 188 YLGLE 192 (193)
T ss_dssp HC---
T ss_pred hCCCC
Confidence 99974
No 6
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=94.10 E-value=0.22 Score=35.68 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=37.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018148 29 DVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKR 81 (360)
Q Consensus 29 ~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR 81 (360)
+++..|+ +..|+.....|...+++|+.+|...|..+++||.+.-
T Consensus 5 ~fLk~ls---------~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi 48 (51)
T 2jo8_A 5 EFLKSWT---------VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAI 48 (51)
T ss_dssp GGGGGSC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---------HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 5677777 4566777788999999999999999999999998753
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=90.86 E-value=0.055 Score=51.59 Aligned_cols=9 Identities=0% Similarity=0.231 Sum_probs=3.8
Q ss_pred HHHHhcChh
Q 018148 116 LTAMKNNDV 124 (360)
Q Consensus 116 l~vL~n~~~ 124 (360)
..+|.+++.
T Consensus 180 ~~~l~~~~~ 188 (386)
T 2ca6_A 180 AKTFQSHRL 188 (386)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 344444443
No 8
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=85.80 E-value=0.17 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=15.3
Q ss_pred cccccccccccccccCCCCCCC
Q 018148 222 KTEECESFFNFFNPPQVPEDDE 243 (360)
Q Consensus 222 k~~~~~SFFnfF~~~~~p~d~~ 243 (360)
.+.+--+||+.-..|...++++
T Consensus 308 ~~~SFFnfFspp~~p~~dede~ 329 (417)
T 2ayu_A 308 PIESFFNFFDPPKIQNEDQDEE 329 (417)
T ss_dssp ECCCGGGGGSCSCSCCCTTSSS
T ss_pred CCCCceeecCCCCCCCcccccc
Confidence 3456788999888887764444
No 9
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=75.42 E-value=11 Score=33.03 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 018148 38 VRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 86 (360)
Q Consensus 38 v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~ 86 (360)
+-..+..|..|+.++..+++.+..++.++..+|....+||-.+...+-.
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~ 66 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELED 66 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999999999999999999999998888774
No 10
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=74.21 E-value=0.64 Score=45.13 Aligned_cols=10 Identities=0% Similarity=-0.064 Sum_probs=4.4
Q ss_pred cccccccccc
Q 018148 226 CESFFNFFNP 235 (360)
Q Consensus 226 ~~SFFnfF~~ 235 (360)
++|.-+.++.
T Consensus 241 npsL~~il~~ 250 (335)
T 4fp9_B 241 NPLLKDILRV 250 (335)
T ss_dssp CCCHHHHTTS
T ss_pred CccHHHHHcC
Confidence 3444444443
No 11
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=73.60 E-value=0.82 Score=42.99 Aligned_cols=45 Identities=13% Similarity=-0.023 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018148 36 PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 80 (360)
Q Consensus 36 ~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~k 80 (360)
..++..+..|..||.++..+..+..++..++.+-+..+++.|...
T Consensus 9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~ 53 (264)
T 2zd7_A 9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDE 53 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 456778999999999999999999888888888766666666654
No 12
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=56.09 E-value=29 Score=27.71 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=31.4
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018148 29 DVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYE 83 (360)
Q Consensus 29 ~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~e 83 (360)
+-.++|||++| .+.||.++..|+.++.++... +.--.++.-.|.+--.
T Consensus 6 ~d~s~LPpeqR-----kkkL~~Ki~el~~ei~ke~~~--regl~Km~~vY~~nP~ 53 (98)
T 2ke4_A 6 EDFSHLPPEQQ-----RKRLQQQLEERSRELQKEVDQ--REALKKMKDVYEKTPQ 53 (98)
T ss_dssp SCSSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHCGG
T ss_pred hhhccCCHHHH-----HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCc
Confidence 34589999998 457888888888888777665 2223334444444333
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.00 E-value=69 Score=24.82 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=26.1
Q ss_pred CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018148 27 HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKF 59 (360)
Q Consensus 27 ~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf 59 (360)
+-+.++.|..+|+..|..+.-||.++..|..+-
T Consensus 4 S~ElleqLE~KIq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 4 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888998888888888886664
No 14
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.63 E-value=87 Score=24.54 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=24.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018148 32 EKLTPAVRKRVEVLREIQSEHDELEAKF 59 (360)
Q Consensus 32 ~~Lp~~v~~rv~aL~~lQ~e~~~le~kf 59 (360)
..+|+.++..+..+..+|.++..+..+.
T Consensus 2 ~~~~~e~Q~~i~~~~~l~~~~~~l~~q~ 29 (117)
T 2zqm_A 2 QNIPPQVQAMLGQLESYQQQLQLVVQQK 29 (117)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999887664
No 15
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.53 E-value=20 Score=23.02 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=9.7
Q ss_pred CCCCCCCCccccc
Q 018148 347 DAQQGERPPECKQ 359 (360)
Q Consensus 347 ~~~~~~~~~~c~~ 359 (360)
+...|++|+.|.+
T Consensus 2 ~~~~gekp~~C~~ 14 (38)
T 2eln_A 2 SSGSSGILLKCPT 14 (38)
T ss_dssp CCSSCCCCEECSS
T ss_pred CCCCCCCCCCCCC
Confidence 3456899999974
No 16
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.27 E-value=2.5e+02 Score=24.11 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=28.2
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHH
Q 018148 31 LEKLTPAVRKRVEVLREIQSEHDELEAKF---FEERAALEAKYQKLYQPMYTKR 81 (360)
Q Consensus 31 ~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf---~~e~~~LE~kY~k~~~Ply~kR 81 (360)
+..|-..++.+-..+..+|.++..|+.++ ..++..|+..+..+..-+..+.
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555666666666666555 3455556666666555555443
No 17
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=27.44 E-value=25 Score=29.78 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=4.4
Q ss_pred cccccchhh
Q 018148 270 KIIPHAVSW 278 (360)
Q Consensus 270 ~IiP~Av~y 278 (360)
.|+|.-+.|
T Consensus 94 divP~ki~l 102 (140)
T 2byk_A 94 QIVPQKIRV 102 (140)
T ss_dssp TTSCSCC--
T ss_pred ccccchhhH
Confidence 667765533
No 18
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=27.27 E-value=1e+02 Score=29.07 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=32.7
Q ss_pred hhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018148 30 VLEKLTPA-----VRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 80 (360)
Q Consensus 30 ~~~~Lp~~-----v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~k 80 (360)
++.+++|. ++.||...+.+..++. .|.+|+..||..|.+.++-|-.+
T Consensus 35 iL~sk~P~qa~~iL~~Rl~~~k~i~keL~----~f~kERa~IEe~YakqLrkLakk 86 (287)
T 3g9g_A 35 ILTTKSPYEATETIRIRLSQVKLLNKDFY----LLFKELANLKRNYAQQLRKIIAE 86 (287)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667775 3455554444444443 57889999999999998887776
No 19
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=26.75 E-value=79 Score=23.14 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018148 34 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQ 75 (360)
Q Consensus 34 Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~ 75 (360)
++...-.||+.|...+.. ..|..+=..|..+|+..|-+.++
T Consensus 2 m~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR 42 (60)
T 3bhp_A 2 ISNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFR 42 (60)
T ss_dssp CCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 445666788888888766 55666666778888888866554
No 20
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=23.60 E-value=2.6e+02 Score=30.93 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 018148 43 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNG 87 (360)
Q Consensus 43 ~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G 87 (360)
.++...|.+.+..+-...+.+++...=-+.+++-+|.+|+.|+.|
T Consensus 732 ~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 776 (997)
T 2ipc_A 732 RSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLG 776 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788999888877777777766666678999999999999976
No 21
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=23.11 E-value=1.1e+02 Score=23.92 Aligned_cols=30 Identities=20% Similarity=0.551 Sum_probs=23.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018148 29 DVLEKLTPAVRKRVEVLREIQSEHDELEAK 58 (360)
Q Consensus 29 ~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~k 58 (360)
+.+++||.++++.+.-|+.+-.++..+..+
T Consensus 11 d~ie~LP~El~r~~~~irelD~~~~~~~~~ 40 (104)
T 4afl_A 11 DSIENLPFELQRNFQLMRDLDQRTEDLKAE 40 (104)
T ss_dssp HSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999988888877777665444
No 22
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.02 E-value=2.5e+02 Score=22.14 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=29.7
Q ss_pred hccCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018148 23 LAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKF--------FEERAALEAKYQKLYQPMYTKRYEIV 85 (360)
Q Consensus 23 l~~~~~~~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf--------~~e~~~LE~kY~k~~~Ply~kR~eII 85 (360)
-++.+...|..|-|. .+....++.++.++..|..+. +.+-.+|.+++.++...|=.....|-
T Consensus 4 t~~Yh~~wi~~l~~~-s~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 73 (93)
T 3sjb_C 4 TNKYHEKWISKFAPG-NELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 73 (93)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHccC-cHhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666443 455666777777777776655 34556677777776666655555554
No 23
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=22.19 E-value=3.4e+02 Score=29.78 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 018148 43 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 88 (360)
Q Consensus 43 ~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G~ 88 (360)
.++...|.+.+..+-...+.+++...=-+.+++-+|.+|++|+.|.
T Consensus 651 ~~ie~aQkkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~~ 696 (922)
T 1nkt_A 651 RAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEGE 696 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5677888888888777777777666666789999999999999764
No 24
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=21.12 E-value=2e+02 Score=23.65 Aligned_cols=35 Identities=11% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018148 43 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPM 77 (360)
Q Consensus 43 ~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Pl 77 (360)
...+........|..++.+|+.++.+||..+++-+
T Consensus 50 ~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~ 84 (115)
T 3vem_A 50 NSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEV 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 25
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.10 E-value=2.1e+02 Score=28.16 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhccCCch---hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018148 12 SFFVVQNKLQNLAGQHSD---VLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLY 74 (360)
Q Consensus 12 ~~~~l~~~l~~l~~~~~~---~~~~Lp~~v~~rv~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~ 74 (360)
-|+.|++.|..+...++. |+..+....++++.........+.++..++.+.+.-|+++-..++
T Consensus 68 rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 68 RINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666554443 444555555555555555555555555555555555555444333
No 26
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=20.68 E-value=38 Score=21.50 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=9.2
Q ss_pred CCCCCCCccccc
Q 018148 348 AQQGERPPECKQ 359 (360)
Q Consensus 348 ~~~~~~~~~c~~ 359 (360)
+..||+|+.|.+
T Consensus 2 ~~~gekp~~C~~ 13 (36)
T 1fv5_A 2 SLLKPARFMCLP 13 (36)
T ss_dssp CSSSCCCCEETT
T ss_pred CCCCccCeECCC
Confidence 345899999975
No 27
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=20.16 E-value=2e+02 Score=31.13 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 018148 43 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNG 87 (360)
Q Consensus 43 ~aL~~lQ~e~~~le~kf~~e~~~LE~kY~k~~~Ply~kR~eII~G 87 (360)
.++...|.+.+..+-...+.+++...--+.+++-+|.+|++|+.|
T Consensus 621 ~~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~~R~~iL~~ 665 (822)
T 3jux_A 621 KLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSLRDQILLE 665 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 568888999998888888888887777889999999999999965
No 28
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=20.05 E-value=22 Score=30.17 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=6.6
Q ss_pred ccccccccccc
Q 018148 224 EECESFFNFFN 234 (360)
Q Consensus 224 ~~~~SFFnfF~ 234 (360)
+....+|+|..
T Consensus 83 V~~~e~~dFL~ 93 (140)
T 2byk_A 83 VNKNKNLEFLL 93 (140)
T ss_dssp HHTCSTTGGGT
T ss_pred HhcCchhhhHh
Confidence 34445777776
Done!