BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018151
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3URS2|ZSC4F_MOUSE Zinc finger and SCAN domain containing protein 4F OS=Mus musculus
GN=Zscan4f PE=2 SV=2
Length = 506
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 178 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR 219
++P FKC CE+ S ++ S ++ +G+MP V L R
Sbjct: 446 HMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSR 487
>sp|Q80VJ6|ZSC4C_MOUSE Zinc finger and SCAN domain containing protein 4C OS=Mus musculus
GN=Zscan4c PE=2 SV=1
Length = 506
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 178 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR 219
++P FKC CE+ S ++ S ++ +G+MP V L R
Sbjct: 446 HMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSR 487
>sp|A7KBS4|ZSC4D_MOUSE Zinc finger and SCAN domain containing protein 4D OS=Mus musculus
GN=Zscan4d PE=2 SV=1
Length = 506
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 178 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR 219
++P FKC CE+ S ++ S ++ +G+MP V L R
Sbjct: 446 HMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSR 487
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPD 254
+C HVFH EC++Q +S+ +CP+C R + N+P+
Sbjct: 133 TCYHVFHQECIDQWL----ESNKTCPVCRRNLDPNAPE 166
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 209 DMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 248
D V+ +L C H FHA CLEQ +D +CP+C +Q
Sbjct: 268 DDSVLAIL-CNHSFHARCLEQW------ADNTCPVCRYVQ 300
>sp|O10339|VCG3_NPVOP Zinc finger protein CG30 OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=CG30 PE=4 SV=1
Length = 249
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 210 MPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQVFSRLKNSFPRLR 269
+P+V + +CRH C+ + + + CP+C R + V+S +NS LR
Sbjct: 31 LPIVELHTCRHQLCVMCVRKIAQRGRDKRVECPMCRR----KNAHFNVYSVNRNSVDVLR 86
Query: 270 QSCDNGQSRPWGCPQAGGCVEGAS 293
C R G + GG + AS
Sbjct: 87 --CSVADVREHG--RFGGLADAAS 106
>sp|P87119|MU145_SCHPO RING finger protein mug145 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=mug145 PE=1 SV=1
Length = 309
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 212 VVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 244
++ VL C HVFH +C++ T T K+ SCP+C
Sbjct: 217 ILRVLPCEHVFHTQCID-TWMTTMKA--SCPLC 246
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Query: 127 PYSRGSTSSRSDSKDDTSTPQWEA-----HRWSSAS-SSVDFADVSEPFESESFGQSYVP 180
P + G S DD +EA R A + AD+ E S F
Sbjct: 332 PTAVGPAISLDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADI-EQLPSYRFNLENHQ 390
Query: 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPS 240
S+ C +C S + SR+++R VL C H FHA+C++ K K++ +
Sbjct: 391 SEQTLCVVC------FSDFESRQLLR--------VLPCNHEFHAKCVD----KWLKTNRT 432
Query: 241 CPIC 244
CPIC
Sbjct: 433 CPIC 436
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 25/126 (19%)
Query: 125 ANPYSRGSTSSRSDSKDDTSTPQWEA-----HRWSSAS-SSVDFADVSEPFESESFGQSY 178
+P + G T S DD +EA R A + AD+ E S F
Sbjct: 232 MSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADI-EQLPSYRFNPDS 290
Query: 179 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSD 238
S+ C +C S + R+++R VL C H FHA+C++ K K++
Sbjct: 291 HQSEQTLCVVC------FSDFEVRQLLR--------VLPCNHEFHAKCVD----KWLKAN 332
Query: 239 PSCPIC 244
+CPIC
Sbjct: 333 RTCPIC 338
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 115 SFTPA-IEGTSANPYSRGSTSSRSDSKDDTSTPQWEA-----HRWSSASS-SVDFADVSE 167
SF P + +P + G T S DD +EA R A + AD+ E
Sbjct: 303 SFLPYFLSMLPMSPTAMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADI-E 361
Query: 168 PFESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECL 227
S F S+ C +C S + +R+++R VL C H FH +C+
Sbjct: 362 QLPSYRFNPDSHQSEQTLCVVC------FSDFEARQLLR--------VLPCNHEFHTKCV 407
Query: 228 EQTTPKTQKSDPSCPIC 244
+ K K++ +CPIC
Sbjct: 408 D----KWLKANRTCPIC 420
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 215 VLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQVFSRLKNSFPRLRQSCDN 274
+L C+H FH EC+ KT SCP+C + E D V+ L+ R RQ N
Sbjct: 85 ILPCKHEFHEECILLWLKKTN----SCPLC---RYELETDDPVYEELR----RFRQDEAN 133
Query: 275 GQSR 278
+ R
Sbjct: 134 RRER 137
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 212 VVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 244
++ VL C H FHA+C++ K K++ +CPIC
Sbjct: 367 LLRVLPCNHEFHAKCVD----KWLKANRTCPIC 395
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 12/46 (26%)
Query: 199 WSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 244
+ SR+++R VL C H FHA+C++ K K++ +CPIC
Sbjct: 470 FESRQLLR--------VLPCNHEFHAKCVD----KWLKANRTCPIC 503
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 216 LSCRHVFHAECLEQTTPKTQKSDPSCPIC 244
L CRHVFH +CLE Q + +CP+C
Sbjct: 90 LDCRHVFHKQCLEGW---LQHLNFNCPLC 115
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 115 SFTPAIEGTSANPYSRGSTSSRSDSKDDTSTPQWEA-----HRWSSASS-SVDFADVSEP 168
S P + P + G T S +D +EA R A + AD+ +
Sbjct: 390 SLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQ- 448
Query: 169 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLE 228
S F S S+ C +C + SR+++R VL C H FHA+C++
Sbjct: 449 LPSYRFNPSNHQSEQTLCVVC------MCDFESRQLLR--------VLPCNHEFHAKCVD 494
Query: 229 QTTPKTQKSDPSCPIC 244
K K + +CPIC
Sbjct: 495 ----KWLKGNRTCPIC 506
>sp|O75382|TRIM3_HUMAN Tripartite motif-containing protein 3 OS=Homo sapiens GN=TRIM3 PE=1
SV=2
Length = 744
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 215 VLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQVFSRLKNSF 265
VL C H F CL+ P Q SCP+C Q P+Q V S L+N+F
Sbjct: 34 VLPCLHTFCERCLQNYIP-AQSLTLSCPVC--RQTSILPEQGV-SALQNNF 80
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 31.6 bits (70), Expect = 9.0, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 66 NSASDSAGLFLSSSSDLSQGPQWTPPAIQEITIDGYETPTRRDPVSTQFSFTPAIEGTSA 125
N + A L + DL+ TP ++ IT DG ++P + +++ F+P
Sbjct: 2057 NQKLNDANQNLETIQDLTSAGFTTPDSLHVITPDGLQSPVAINTINSPLPFSPTYNANLL 2116
Query: 126 NPYSRGSTSSRSDSKDDTSTPQWEAHRWSSASSSVDFADVSEPFESESFGQSYVPSDTFK 185
+P ++ D+ ++ +PQ+ + S D++ ++ G + P+ + K
Sbjct: 2117 SP------TAPIDNVNNLLSPQYNLQNYGDNVMSPTSKDINN-LDTLKLGGKFSPTQSPK 2169
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 218 CRHVFHAECLEQTTPKTQKSDPSCPIC 244
C H FH EC++Q +Q SCP+C
Sbjct: 544 CNHFFHRECIDQWLTSSQN---SCPLC 567
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,634,950
Number of Sequences: 539616
Number of extensions: 5890230
Number of successful extensions: 14450
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 13794
Number of HSP's gapped (non-prelim): 573
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)