Query 018151
Match_columns 360
No_of_seqs 138 out of 663
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 06:34:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12678 zf-rbx1: RING-H2 zinc 99.3 9.6E-13 2.1E-17 103.2 2.7 56 182-245 18-73 (73)
2 PF13639 zf-RING_2: Ring finge 99.3 1.1E-12 2.4E-17 92.5 1.5 44 184-245 1-44 (44)
3 PF12861 zf-Apc11: Anaphase-pr 99.2 1.3E-11 2.8E-16 101.2 4.7 64 182-250 20-83 (85)
4 KOG4628 Predicted E3 ubiquitin 99.0 8.3E-11 1.8E-15 116.5 2.7 50 184-250 230-279 (348)
5 COG5194 APC11 Component of SCF 99.0 1.9E-10 4E-15 94.1 3.9 63 183-250 20-82 (88)
6 COG5243 HRD1 HRD ubiquitin lig 98.9 1E-09 2.2E-14 110.1 3.4 62 180-249 284-345 (491)
7 cd00162 RING RING-finger (Real 98.8 3.1E-09 6.8E-14 71.3 3.3 45 185-248 1-45 (45)
8 PHA02929 N1R/p28-like protein; 98.8 2.8E-09 6.2E-14 101.0 3.4 57 181-250 172-228 (238)
9 KOG1493 Anaphase-promoting com 98.8 2.4E-09 5.2E-14 87.0 1.3 63 183-250 20-82 (84)
10 KOG2930 SCF ubiquitin ligase, 98.7 3.2E-09 7E-14 90.4 1.8 67 180-250 43-109 (114)
11 COG5540 RING-finger-containing 98.6 1.5E-08 3.3E-13 99.6 2.5 51 182-249 322-372 (374)
12 KOG0802 E3 ubiquitin ligase [P 98.6 1.8E-08 3.8E-13 103.9 2.7 54 180-249 288-341 (543)
13 smart00184 RING Ring finger. E 98.6 3.6E-08 7.8E-13 63.9 3.1 39 186-244 1-39 (39)
14 PF13923 zf-C3HC4_2: Zinc fing 98.6 1.5E-08 3.2E-13 70.2 1.3 39 186-244 1-39 (39)
15 PLN03208 E3 ubiquitin-protein 98.5 6.4E-08 1.4E-12 89.6 3.7 52 182-250 17-80 (193)
16 PF15227 zf-C3HC4_4: zinc fing 98.4 1.1E-07 2.4E-12 67.9 2.5 42 186-244 1-42 (42)
17 PF00097 zf-C3HC4: Zinc finger 98.4 7.3E-08 1.6E-12 66.4 1.0 41 186-244 1-41 (41)
18 PF13920 zf-C3HC4_3: Zinc fing 98.4 1.5E-07 3.2E-12 68.1 1.7 47 183-250 2-49 (50)
19 PF14634 zf-RING_5: zinc-RING 98.4 3.9E-07 8.4E-12 64.8 3.8 44 185-246 1-44 (44)
20 smart00504 Ubox Modified RING 98.3 5.9E-07 1.3E-11 66.3 2.7 46 184-250 2-47 (63)
21 TIGR00599 rad18 DNA repair pro 98.2 1.1E-06 2.3E-11 88.9 4.4 48 182-250 25-72 (397)
22 KOG0320 Predicted E3 ubiquitin 98.2 7.7E-07 1.7E-11 82.0 2.5 51 182-251 130-180 (187)
23 PHA02926 zinc finger-like prot 98.1 2.1E-06 4.5E-11 81.7 4.2 60 181-249 168-230 (242)
24 KOG0827 Predicted E3 ubiquitin 98.1 1.1E-06 2.5E-11 88.8 2.5 53 184-250 5-57 (465)
25 PF13445 zf-RING_UBOX: RING-ty 98.1 1.1E-06 2.5E-11 63.5 1.7 43 186-242 1-43 (43)
26 KOG1734 Predicted RING-contain 98.1 1.4E-06 2.9E-11 85.0 1.8 65 177-250 218-282 (328)
27 KOG0828 Predicted E3 ubiquitin 98.0 2.5E-06 5.4E-11 88.5 1.7 65 180-249 568-634 (636)
28 KOG0804 Cytoplasmic Zn-finger 98.0 4E-06 8.6E-11 86.0 2.8 53 178-249 170-222 (493)
29 smart00744 RINGv The RING-vari 97.8 2.1E-05 4.5E-10 58.0 3.3 31 213-245 14-49 (49)
30 KOG0317 Predicted E3 ubiquitin 97.8 1.7E-05 3.6E-10 77.6 3.2 49 181-250 237-285 (293)
31 PF04564 U-box: U-box domain; 97.6 2.6E-05 5.7E-10 60.9 2.1 49 182-250 3-51 (73)
32 KOG2177 Predicted E3 ubiquitin 97.6 3.4E-05 7.3E-10 66.7 2.5 45 181-246 11-55 (386)
33 KOG1941 Acetylcholine receptor 97.6 2.6E-05 5.7E-10 79.4 1.6 56 179-249 361-416 (518)
34 PF11793 FANCL_C: FANCL C-term 97.6 7.1E-06 1.5E-10 64.3 -2.0 56 183-250 2-67 (70)
35 TIGR00570 cdk7 CDK-activating 97.6 6.1E-05 1.3E-09 74.4 3.8 56 181-251 1-56 (309)
36 KOG0287 Postreplication repair 97.5 3.8E-05 8.3E-10 77.1 2.1 49 182-251 22-70 (442)
37 KOG0825 PHD Zn-finger protein 97.5 8E-05 1.7E-09 80.9 4.5 39 209-251 135-173 (1134)
38 COG5574 PEX10 RING-finger-cont 97.4 6.9E-05 1.5E-09 72.7 2.6 52 179-250 211-263 (271)
39 PF10367 Vps39_2: Vacuolar sor 97.3 5.9E-05 1.3E-09 60.3 0.3 32 182-228 77-108 (109)
40 KOG2164 Predicted E3 ubiquitin 97.2 0.00013 2.8E-09 75.9 2.0 51 183-250 186-237 (513)
41 KOG0823 Predicted E3 ubiquitin 97.2 0.0002 4.4E-09 68.2 2.7 53 180-250 44-96 (230)
42 COG5219 Uncharacterized conser 97.0 0.00028 6E-09 78.2 2.0 56 182-249 1468-1523(1525)
43 KOG1940 Zn-finger protein [Gen 97.0 0.0004 8.7E-09 67.8 2.7 50 182-249 157-206 (276)
44 KOG1645 RING-finger-containing 97.0 0.00031 6.7E-09 71.9 1.6 53 182-248 3-55 (463)
45 KOG0824 Predicted E3 ubiquitin 96.8 0.0011 2.4E-08 65.7 3.6 73 181-273 5-78 (324)
46 COG5432 RAD18 RING-finger-cont 96.7 0.00076 1.6E-08 67.0 1.8 46 184-250 26-71 (391)
47 KOG0978 E3 ubiquitin ligase in 96.6 0.00068 1.5E-08 73.1 1.1 49 184-252 644-692 (698)
48 PF11789 zf-Nse: Zinc-finger o 96.2 0.002 4.4E-08 49.1 1.4 44 182-243 10-53 (57)
49 KOG2114 Vacuolar assembly/sort 96.1 0.0026 5.7E-08 69.9 1.8 48 179-249 836-883 (933)
50 KOG4265 Predicted E3 ubiquitin 96.1 0.0031 6.7E-08 63.4 2.2 48 182-250 289-337 (349)
51 KOG1039 Predicted E3 ubiquitin 95.8 0.0045 9.9E-08 62.1 1.8 59 181-249 159-221 (344)
52 KOG0311 Predicted E3 ubiquitin 95.8 0.0026 5.6E-08 64.3 -0.0 50 183-251 43-92 (381)
53 KOG1785 Tyrosine kinase negati 95.7 0.0094 2E-07 61.5 3.6 50 182-250 368-417 (563)
54 KOG4159 Predicted E3 ubiquitin 95.7 0.0056 1.2E-07 62.5 1.9 51 179-250 80-130 (398)
55 PF04641 Rtf2: Rtf2 RING-finge 95.5 0.009 2E-07 56.8 2.6 71 181-269 111-186 (260)
56 KOG2034 Vacuolar sorting prote 95.4 0.0082 1.8E-07 66.3 2.1 37 181-232 815-851 (911)
57 KOG0827 Predicted E3 ubiquitin 95.2 0.0013 2.8E-08 67.2 -4.4 57 180-253 193-249 (465)
58 KOG3039 Uncharacterized conser 94.9 0.019 4.1E-07 56.2 3.0 54 181-251 219-272 (303)
59 KOG3970 Predicted E3 ubiquitin 94.8 0.023 4.9E-07 55.2 3.1 52 183-249 50-105 (299)
60 PF05883 Baculo_RING: Baculovi 94.5 0.026 5.7E-07 50.3 2.6 36 182-231 25-66 (134)
61 KOG4445 Uncharacterized conser 94.5 0.013 2.9E-07 58.5 0.7 55 181-249 113-186 (368)
62 COG5152 Uncharacterized conser 93.9 0.026 5.7E-07 53.9 1.3 46 184-250 197-242 (259)
63 PF14835 zf-RING_6: zf-RING of 93.8 0.022 4.8E-07 45.3 0.6 46 184-251 8-53 (65)
64 KOG1428 Inhibitor of type V ad 93.8 0.043 9.4E-07 63.9 3.0 55 180-249 3483-3544(3738)
65 PHA02862 5L protein; Provision 93.2 0.062 1.4E-06 48.9 2.5 47 183-249 2-53 (156)
66 KOG4185 Predicted E3 ubiquitin 93.2 0.056 1.2E-06 51.4 2.4 54 182-249 2-55 (296)
67 PHA02825 LAP/PHD finger-like p 93.0 0.092 2E-06 48.2 3.3 52 181-250 6-60 (162)
68 COG5222 Uncharacterized conser 92.6 0.076 1.7E-06 53.4 2.4 45 184-247 275-319 (427)
69 KOG4739 Uncharacterized protei 92.4 0.07 1.5E-06 51.3 1.9 32 212-249 17-48 (233)
70 COG5236 Uncharacterized conser 91.9 0.12 2.5E-06 53.1 2.7 49 181-250 59-109 (493)
71 PHA03096 p28-like protein; Pro 91.9 0.082 1.8E-06 51.9 1.6 73 184-267 179-252 (284)
72 KOG0297 TNF receptor-associate 91.6 0.1 2.2E-06 52.8 2.1 48 182-249 20-67 (391)
73 PF12906 RINGv: RING-variant d 91.1 0.035 7.7E-07 40.6 -1.3 42 186-244 1-47 (47)
74 KOG1813 Predicted E3 ubiquitin 90.6 0.09 1.9E-06 52.4 0.5 59 183-262 241-300 (313)
75 KOG2879 Predicted E3 ubiquitin 90.2 0.18 4E-06 49.9 2.3 51 181-249 237-287 (298)
76 PF14570 zf-RING_4: RING/Ubox 89.5 0.27 5.9E-06 37.0 2.2 48 186-249 1-48 (48)
77 KOG1002 Nucleotide excision re 89.1 0.19 4.2E-06 53.8 1.6 52 181-249 534-586 (791)
78 KOG2660 Locus-specific chromos 88.8 0.14 3E-06 51.6 0.3 51 181-251 13-63 (331)
79 KOG0309 Conserved WD40 repeat- 88.6 0.2 4.3E-06 55.5 1.2 52 182-242 1017-1068(1081)
80 PF14447 Prok-RING_4: Prokaryo 88.4 0.21 4.6E-06 38.6 1.0 32 213-250 20-51 (55)
81 PF07800 DUF1644: Protein of u 87.5 0.42 9.2E-06 44.0 2.5 19 238-256 80-98 (162)
82 KOG1571 Predicted E3 ubiquitin 86.8 0.22 4.9E-06 50.5 0.4 45 182-250 304-348 (355)
83 KOG2066 Vacuolar assembly/sort 86.3 0.27 5.9E-06 54.3 0.7 42 183-234 784-825 (846)
84 KOG4172 Predicted E3 ubiquitin 86.3 0.27 5.8E-06 38.6 0.4 46 184-250 8-55 (62)
85 KOG3161 Predicted E3 ubiquitin 85.7 0.31 6.7E-06 53.2 0.7 86 182-287 10-104 (861)
86 smart00249 PHD PHD zinc finger 85.2 0.51 1.1E-05 31.7 1.4 29 216-244 18-47 (47)
87 KOG3800 Predicted E3 ubiquitin 85.0 0.84 1.8E-05 45.5 3.4 52 185-251 2-53 (300)
88 KOG1952 Transcription factor N 85.0 0.48 1.1E-05 52.9 1.8 57 180-249 188-247 (950)
89 KOG1001 Helicase-like transcri 83.8 0.59 1.3E-05 50.9 1.9 48 184-251 455-502 (674)
90 KOG3268 Predicted E3 ubiquitin 82.7 0.95 2.1E-05 43.0 2.5 36 215-250 187-229 (234)
91 PF08746 zf-RING-like: RING-li 81.0 1.2 2.5E-05 32.3 1.9 26 217-244 18-43 (43)
92 KOG1829 Uncharacterized conser 79.1 0.88 1.9E-05 49.0 1.1 33 211-250 530-562 (580)
93 KOG3113 Uncharacterized conser 79.1 1.2 2.6E-05 44.0 2.0 53 181-252 109-161 (293)
94 PF14446 Prok-RING_1: Prokaryo 76.7 2.1 4.5E-05 33.1 2.3 35 182-230 4-39 (54)
95 KOG4275 Predicted E3 ubiquitin 76.3 0.66 1.4E-05 46.7 -0.7 43 183-250 300-343 (350)
96 KOG0801 Predicted E3 ubiquitin 76.2 0.79 1.7E-05 42.9 -0.2 30 181-224 175-204 (205)
97 KOG2817 Predicted E3 ubiquitin 75.8 1.9 4.2E-05 44.5 2.4 39 210-249 347-385 (394)
98 KOG1814 Predicted E3 ubiquitin 75.7 1.7 3.6E-05 45.4 2.0 54 179-246 180-237 (445)
99 KOG3053 Uncharacterized conser 75.6 1.7 3.7E-05 43.0 2.0 59 178-250 15-83 (293)
100 PF13901 DUF4206: Domain of un 74.2 1.8 3.9E-05 40.2 1.6 50 180-248 149-199 (202)
101 COG5220 TFB3 Cdk activating ki 67.3 2.5 5.4E-05 41.8 1.0 53 182-251 9-66 (314)
102 KOG2932 E3 ubiquitin ligase in 67.0 2.7 5.9E-05 42.8 1.2 45 183-249 90-134 (389)
103 KOG1609 Protein involved in mR 66.1 4.3 9.2E-05 38.1 2.3 53 182-249 77-134 (323)
104 PF00628 PHD: PHD-finger; Int 65.0 0.61 1.3E-05 33.3 -2.8 48 185-246 1-50 (51)
105 KOG4692 Predicted E3 ubiquitin 62.6 5.3 0.00012 41.5 2.3 48 181-249 420-467 (489)
106 KOG0269 WD40 repeat-containing 61.8 4.3 9.3E-05 45.3 1.6 29 217-249 798-828 (839)
107 KOG3842 Adaptor protein Pellin 61.2 7 0.00015 40.1 2.8 69 182-250 340-415 (429)
108 COG5183 SSM4 Protein involved 60.9 8.4 0.00018 43.7 3.6 53 182-249 11-66 (1175)
109 PF04710 Pellino: Pellino; In 60.2 2.9 6.3E-05 43.5 0.0 61 183-249 277-339 (416)
110 KOG1100 Predicted E3 ubiquitin 59.0 3.3 7.1E-05 39.1 0.1 29 213-249 171-200 (207)
111 COG5109 Uncharacterized conser 57.7 6.5 0.00014 40.2 1.9 35 212-247 351-385 (396)
112 PF04710 Pellino: Pellino; In 57.1 3.5 7.6E-05 42.9 0.0 67 183-250 328-402 (416)
113 PF10272 Tmpp129: Putative tra 55.4 8.9 0.00019 39.2 2.5 33 217-249 310-351 (358)
114 KOG0298 DEAD box-containing he 50.2 6.5 0.00014 46.1 0.7 47 183-249 1153-1199(1394)
115 cd00350 rubredoxin_like Rubred 49.0 5.4 0.00012 27.1 -0.1 11 238-248 17-27 (33)
116 PF02891 zf-MIZ: MIZ/SP-RING z 48.9 8.6 0.00019 28.5 0.9 33 212-247 15-50 (50)
117 KOG1812 Predicted E3 ubiquitin 47.7 9.3 0.0002 39.0 1.3 56 181-249 144-203 (384)
118 PF05290 Baculo_IE-1: Baculovi 47.3 18 0.0004 32.8 2.9 55 182-250 79-133 (140)
119 PF05605 zf-Di19: Drought indu 45.7 19 0.00042 26.5 2.4 12 183-194 2-13 (54)
120 COG5175 MOT2 Transcriptional r 45.4 15 0.00034 38.1 2.4 51 184-250 15-65 (480)
121 cd04718 BAH_plant_2 BAH, or Br 45.1 8.9 0.00019 34.9 0.6 29 222-250 2-30 (148)
122 KOG3899 Uncharacterized conser 44.7 15 0.00031 37.5 2.1 33 217-249 324-365 (381)
123 KOG0826 Predicted E3 ubiquitin 44.2 15 0.00033 37.6 2.2 51 179-249 296-346 (357)
124 KOG3002 Zn finger protein [Gen 41.8 17 0.00036 36.3 2.0 45 180-249 45-91 (299)
125 PF14569 zf-UDP: Zinc-binding 41.4 27 0.00059 29.1 2.8 59 179-250 5-63 (80)
126 KOG2068 MOT2 transcription fac 40.8 20 0.00043 36.6 2.3 50 184-250 250-299 (327)
127 KOG4718 Non-SMC (structural ma 40.6 18 0.0004 35.2 2.0 50 181-250 179-228 (235)
128 PF04423 Rad50_zn_hook: Rad50 37.4 7.9 0.00017 28.6 -0.8 25 226-250 8-32 (54)
129 PLN02189 cellulose synthase 37.0 29 0.00062 40.2 3.1 60 177-249 28-87 (1040)
130 KOG4367 Predicted Zn-finger pr 36.8 23 0.00051 37.9 2.2 36 182-234 3-38 (699)
131 KOG2979 Protein involved in DN 34.9 20 0.00043 35.5 1.3 51 190-247 172-222 (262)
132 KOG3842 Adaptor protein Pellin 33.1 30 0.00066 35.7 2.3 59 184-248 291-351 (429)
133 KOG4577 Transcription factor L 31.1 9.3 0.0002 38.8 -1.6 22 216-249 110-131 (383)
134 KOG0825 PHD Zn-finger protein 29.3 16 0.00035 41.5 -0.4 52 182-249 214-268 (1134)
135 PLN02436 cellulose synthase A 29.1 47 0.001 38.7 3.1 60 177-249 30-89 (1094)
136 PLN02638 cellulose synthase A 28.9 50 0.0011 38.5 3.3 61 176-249 10-70 (1079)
137 PLN02915 cellulose synthase A 28.7 50 0.0011 38.4 3.3 57 181-250 13-69 (1044)
138 KOG4185 Predicted E3 ubiquitin 28.6 12 0.00027 35.6 -1.3 52 182-247 206-265 (296)
139 KOG1512 PHD Zn-finger protein 27.7 22 0.00047 36.2 0.2 104 182-308 257-380 (381)
140 PF15616 TerY-C: TerY-C metal 27.6 19 0.00041 32.2 -0.2 41 182-249 76-116 (131)
141 KOG0802 E3 ubiquitin ligase [P 25.8 36 0.00077 36.0 1.4 45 181-250 477-521 (543)
142 PF12088 DUF3565: Protein of u 25.3 37 0.00081 27.1 1.1 23 209-231 8-30 (61)
143 PF14311 DUF4379: Domain of un 24.8 34 0.00073 25.3 0.8 23 217-244 33-55 (55)
144 PF03854 zf-P11: P-11 zinc fin 24.6 26 0.00057 26.9 0.1 32 215-250 15-47 (50)
145 PRK11827 hypothetical protein; 24.4 28 0.00061 27.4 0.3 33 239-271 9-48 (60)
146 KOG1815 Predicted E3 ubiquitin 23.0 65 0.0014 33.2 2.6 54 181-250 68-127 (444)
147 PF06676 DUF1178: Protein of u 22.9 29 0.00062 31.6 0.1 38 217-259 9-53 (148)
148 KOG2079 Vacuolar assembly/sort 22.8 52 0.0011 38.5 2.0 38 181-231 1131-1168(1206)
149 COG1645 Uncharacterized Zn-fin 22.4 35 0.00076 30.7 0.5 15 181-195 26-40 (131)
150 KOG1701 Focal adhesion adaptor 21.5 15 0.00032 38.9 -2.3 40 184-253 335-375 (468)
151 KOG4362 Transcriptional regula 21.4 37 0.00079 37.8 0.5 52 182-251 20-71 (684)
152 PF14169 YdjO: Cold-inducible 21.1 50 0.0011 26.1 1.1 13 238-250 39-51 (59)
153 PF09723 Zn-ribbon_8: Zinc rib 20.4 44 0.00096 23.8 0.6 25 217-246 10-34 (42)
154 PF09237 GAGA: GAGA factor; I 20.4 22 0.00048 27.7 -1.0 12 239-250 25-36 (54)
No 1
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.30 E-value=9.6e-13 Score=103.15 Aligned_cols=56 Identities=25% Similarity=0.556 Sum_probs=42.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 245 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCr 245 (360)
.+.+|+||++.|.+.++.+.. +++...+++++|||+||.+||++|+... .+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~----~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQA----PQDECPIVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHH----CTTTS-EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cCCcccccChhhhChhhhhcC----CccccceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 455699999999877665543 2244567788999999999999999775 4999997
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.27 E-value=1.1e-12 Score=92.46 Aligned_cols=44 Identities=32% Similarity=0.720 Sum_probs=36.1
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 245 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCr 245 (360)
+.|+||++.|.. ...+.+|+|||+||.+||++|+... .+||+||
T Consensus 1 d~C~IC~~~~~~--------------~~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED--------------GEKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT--------------TSCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcC--------------CCeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence 369999999973 2357789999999999999999875 4999997
No 3
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.21 E-value=1.3e-11 Score=101.15 Aligned_cols=64 Identities=23% Similarity=0.419 Sum_probs=53.7
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+..|+||...|...+|-+. .++|..++....|+|.||.+||.+|+.... ....||+||+.+.-
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck----~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCK----FPGDDCPLVWGKCSHNFHMHCILKWLSTQS-SKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCcc----CCCCCCceeeccCccHHHHHHHHHHHcccc-CCCCCCCcCCeeee
Confidence 37899999999998888663 367777887889999999999999998753 24799999999864
No 4
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=8.3e-11 Score=116.52 Aligned_cols=50 Identities=26% Similarity=0.629 Sum_probs=42.8
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..|+||+++|.. .+.+++|||.|.||..|++.|+.+.. -.||+|+..+..
T Consensus 230 ~~CaIClEdY~~--------------GdklRiLPC~H~FH~~CIDpWL~~~r---~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEK--------------GDKLRILPCSHKFHVNCIDPWLTQTR---TFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeeccccc--------------CCeeeEecCCCchhhccchhhHhhcC---ccCCCCCCcCCC
Confidence 489999999982 34688999999999999999998763 469999998864
No 5
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.03 E-value=1.9e-10 Score=94.12 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=56.4
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.++|+||...+...||+|.... .+++..+++...|.|.||.+||.+||... ..||+|++.+.-
T Consensus 20 id~CaICRnhim~~C~eCq~~~-~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk----~~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGM-TPGDECPVVWGVCNHAFHDHCIYRWLDTK----GVCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCC-CCCCcceEEEEecchHHHHHHHHHHHhhC----CCCCCCCceeEE
Confidence 4889999999999999997766 66777889999999999999999999885 489999999974
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1e-09 Score=110.12 Aligned_cols=62 Identities=27% Similarity=0.551 Sum_probs=45.8
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
..++..|.||.+.+... + - +..-+.-|+ ....|||||++|.+||+.|+.+++ +|||||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~-~-~-~~~~~~~~~-~pKrLpCGHilHl~CLknW~ERqQ----TCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHP-D-H-EPLPRGLDM-TPKRLPCGHILHLHCLKNWLERQQ----TCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCC-C-C-ccCcccccC-CcccccccceeeHHHHHHHHHhcc----CCCcccCccc
Confidence 35788999999997532 1 0 112222233 456899999999999999999875 9999999953
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.82 E-value=3.1e-09 Score=71.31 Aligned_cols=45 Identities=27% Similarity=0.684 Sum_probs=35.7
Q ss_pred cccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCc
Q 018151 185 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 248 (360)
Q Consensus 185 ~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~ 248 (360)
.|+||.+.+.. .+.+++|||.||..||+.|+... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~----------------~~~~~~C~H~~c~~C~~~~~~~~---~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE----------------PVVLLPCGHVFCRSCIDKWLKSG---KNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC----------------ceEecCCCChhcHHHHHHHHHhC---cCCCCCCCCcC
Confidence 49999998741 35566799999999999999763 26899999763
No 8
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.79 E-value=2.8e-09 Score=100.96 Aligned_cols=57 Identities=23% Similarity=0.502 Sum_probs=41.2
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..+..|+||++.+.+.. ........+++|||+||.+||.+|+... .+||+||..+..
T Consensus 172 ~~~~eC~ICle~~~~~~---------~~~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKE---------IKNMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCc---------cccccceecCCCCCcccHHHHHHHHhcC----CCCCCCCCEeeE
Confidence 35678999999876320 0011123345799999999999998753 699999998863
No 9
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.4e-09 Score=87.05 Aligned_cols=63 Identities=25% Similarity=0.442 Sum_probs=51.3
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..+|+||...|...+|-|- -++|..+....-|.|.||++||.+|+.... ....||+||..+.-
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck----~PgDdCPLv~G~C~h~fh~hCI~~wl~~~t-sq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCK----LPGDDCPLVWGYCLHAFHAHCILKWLNTPT-SQGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCc----CCCCCCccHHHHHHHHHHHHHHHHHhcCcc-ccccCCcchheeEe
Confidence 4599999999999999873 366766765668999999999999997653 23689999998863
No 10
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.2e-09 Score=90.43 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=58.5
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+..++|+||...+.+.|.+|..+...+.+...|+...|.|.||.+||.+|+... ..||+|.+.+.-
T Consensus 43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr----~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTR----NVCPLDNKEWVF 109 (114)
T ss_pred eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhc----CcCCCcCcceeE
Confidence 3566899999999999999998877666777789999999999999999999876 489999999873
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.5e-08 Score=99.61 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=41.9
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.+-.|+||+..+. ..+.+.||||-|+||.-|+++|+..-. ..||+|+.++.
T Consensus 322 ~GveCaICms~fi--------------K~d~~~vlPC~H~FH~~Cv~kW~~~y~---~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFI--------------KNDRLRVLPCDHRFHVGCVDKWLLGYS---NKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhc--------------ccceEEEeccCceechhHHHHHHhhhc---ccCCccCCCCC
Confidence 4578999999986 234588999999999999999997432 58999998764
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.8e-08 Score=103.86 Aligned_cols=54 Identities=26% Similarity=0.525 Sum_probs=43.7
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
......|.||.+.|.. ++...+..|+|||+||.+||.+|+... .+||+||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~------------~~~~~~~rL~C~Hifh~~CL~~W~er~----qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHS------------GHNITPKRLPCGHIFHDSCLRSWFERQ----QTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhcc------------ccccccceeecccchHHHHHHHHHHHh----CcCCcchhhhh
Confidence 3457889999999972 122347799999999999999999886 49999999543
No 13
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.60 E-value=3.6e-08 Score=63.87 Aligned_cols=39 Identities=33% Similarity=0.776 Sum_probs=31.1
Q ss_pred ccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCccc
Q 018151 186 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 244 (360)
Q Consensus 186 C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlC 244 (360)
|+||.+... ...+++|||+||.+||+.|+... ...||+|
T Consensus 1 C~iC~~~~~-----------------~~~~~~C~H~~c~~C~~~~~~~~---~~~CP~C 39 (39)
T smart00184 1 CPICLEELK-----------------DPVVLPCGHTFCRSCIRKWLKSG---NNTCPIC 39 (39)
T ss_pred CCcCccCCC-----------------CcEEecCCChHHHHHHHHHHHhC---cCCCCCC
Confidence 788877732 36688999999999999999732 2579998
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.60 E-value=1.5e-08 Score=70.17 Aligned_cols=39 Identities=41% Similarity=0.922 Sum_probs=32.0
Q ss_pred ccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCccc
Q 018151 186 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 244 (360)
Q Consensus 186 C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlC 244 (360)
|+||++.+.+ ++.+++|||+|..+|+++|+.+. ..||+|
T Consensus 1 C~iC~~~~~~----------------~~~~~~CGH~fC~~C~~~~~~~~----~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD----------------PVVVTPCGHSFCKECIEKYLEKN----PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS----------------EEEECTTSEEEEHHHHHHHHHCT----SB-TTT
T ss_pred CCCCCCcccC----------------cCEECCCCCchhHHHHHHHHHCc----CCCcCC
Confidence 8999998762 45689999999999999999883 689998
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.52 E-value=6.4e-08 Score=89.63 Aligned_cols=52 Identities=27% Similarity=0.639 Sum_probs=40.4
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC------------CCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT------------QKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~------------~~~dpsCPlCrk~~~ 249 (360)
....|+||++.+.+ ..+++|||+|+..||.+|+... .+..+.||+|+..+.
T Consensus 17 ~~~~CpICld~~~d-----------------PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVRD-----------------PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCCC-----------------cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 45789999998752 3467999999999999998531 123478999999997
Q ss_pred c
Q 018151 250 E 250 (360)
Q Consensus 250 ~ 250 (360)
.
T Consensus 80 ~ 80 (193)
T PLN03208 80 E 80 (193)
T ss_pred h
Confidence 4
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.44 E-value=1.1e-07 Score=67.89 Aligned_cols=42 Identities=33% Similarity=0.710 Sum_probs=31.4
Q ss_pred ccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCccc
Q 018151 186 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 244 (360)
Q Consensus 186 C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlC 244 (360)
|+||++.|.+ ...|+|||+|=..||++|..+.......||+|
T Consensus 1 CpiC~~~~~~-----------------Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD-----------------PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS-----------------EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC-----------------ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999983 45799999999999999987765444789998
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.42 E-value=7.3e-08 Score=66.42 Aligned_cols=41 Identities=29% Similarity=0.770 Sum_probs=33.5
Q ss_pred ccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCccc
Q 018151 186 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 244 (360)
Q Consensus 186 C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlC 244 (360)
|+||++.+.+ .+.+++|||.|+..||.+|+... ....||+|
T Consensus 1 C~iC~~~~~~----------------~~~~~~C~H~fC~~C~~~~~~~~--~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED----------------PVILLPCGHSFCRDCLRKWLENS--GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS----------------EEEETTTSEEEEHHHHHHHHHHT--SSSBTTTT
T ss_pred CCcCCccccC----------------CCEEecCCCcchHHHHHHHHHhc--CCccCCcC
Confidence 8999999873 23589999999999999999842 23689998
No 18
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.37 E-value=1.5e-07 Score=68.15 Aligned_cols=47 Identities=32% Similarity=0.648 Sum_probs=37.5
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCCh-hhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHV-FHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
...|.||++... .+.++||||+ |...|+++|+... ..||+|++.+..
T Consensus 2 ~~~C~iC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~~~~~----~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR-----------------DVVLLPCGHLCFCEECAERLLKRK----KKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS-----------------SEEEETTCEEEEEHHHHHHHHHTT----SBBTTTTBB-SE
T ss_pred cCCCccCCccCC-----------------ceEEeCCCChHHHHHHhHHhcccC----CCCCcCChhhcC
Confidence 357999999854 2678999999 9999999999843 689999998753
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.37 E-value=3.9e-07 Score=64.83 Aligned_cols=44 Identities=32% Similarity=0.749 Sum_probs=35.2
Q ss_pred cccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCccccc
Q 018151 185 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 246 (360)
Q Consensus 185 ~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk 246 (360)
.|.||.+.+. +.....+++|||+|...||++.... ...||+|++
T Consensus 1 ~C~~C~~~~~--------------~~~~~~l~~CgH~~C~~C~~~~~~~----~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS--------------EERRPRLTSCGHIFCEKCLKKLKGK----SVKCPICRK 44 (44)
T ss_pred CCcCcCcccc--------------CCCCeEEcccCCHHHHHHHHhhcCC----CCCCcCCCC
Confidence 4999999983 1234778999999999999999822 368999985
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.25 E-value=5.9e-07 Score=66.25 Aligned_cols=46 Identities=11% Similarity=0.210 Sum_probs=38.4
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..|+||++.+.. ..+++|||+|-.+||++|+.+. ..||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~-----------------Pv~~~~G~v~~~~~i~~~~~~~----~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKD-----------------PVILPSGQTYERRAIEKWLLSH----GTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCC-----------------CEECCCCCEEeHHHHHHHHHHC----CCCCCCcCCCCh
Confidence 469999999872 2467999999999999999762 689999998854
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=1.1e-06 Score=88.90 Aligned_cols=48 Identities=29% Similarity=0.868 Sum_probs=39.9
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|+||.+.|.. + .+++|||+|+..||..|+... ..||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~~---------------P--vitpCgH~FCs~CI~~~l~~~----~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDV---------------P--VLTSCSHTFCSLCIRRCLSNQ----PKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhC---------------c--cCCCCCCchhHHHHHHHHhCC----CCCCCCCCcccc
Confidence 45789999999862 2 268999999999999999763 479999999874
No 22
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=7.7e-07 Score=82.02 Aligned_cols=51 Identities=29% Similarity=0.744 Sum_probs=41.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
....|+||++.+.++.| ....|||||-.+||+..+.... .||+|++.+.++
T Consensus 130 ~~~~CPiCl~~~sek~~---------------vsTkCGHvFC~~Cik~alk~~~----~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP---------------VSTKCGHVFCSQCIKDALKNTN----KCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccc---------------cccccchhHHHHHHHHHHHhCC----CCCCcccccchh
Confidence 44889999999986532 2358999999999999998764 899999977653
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.13 E-value=2.1e-06 Score=81.74 Aligned_cols=60 Identities=25% Similarity=0.560 Sum_probs=41.8
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEe-eCCCChhhHHHHHhhcccCC--CCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGV-LSCRHVFHAECLEQTTPKTQ--KSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaV-LPCGHVFHaeCLEqWl~k~~--~~dpsCPlCrk~~~ 249 (360)
..+..|+||++.+.++... ++ ..-++ .+|+|+|+..||++|....+ .....||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~--------~e-RrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLE--------ND-RYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCcccccccccc--------cc-ccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4678999999987643111 11 12334 47999999999999986432 11246999999876
No 24
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.1e-06 Score=88.78 Aligned_cols=53 Identities=28% Similarity=0.560 Sum_probs=38.6
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..|.|| .++. +++..+.++-.|||+||..||.||+.....+ ..||+|+-..++
T Consensus 5 A~C~Ic-~d~~------------p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~-R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHIC-IDGR------------PNDHELGPIGTCGHIFHTTCLTQWFEGDPSN-RGCPICQIKLQE 57 (465)
T ss_pred ceeeEe-ccCC------------ccccccccccchhhHHHHHHHHHHHccCCcc-CCCCceeecccc
Confidence 469999 4444 2344555566799999999999999775422 479999955554
No 25
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.12 E-value=1.1e-06 Score=63.54 Aligned_cols=43 Identities=33% Similarity=0.783 Sum_probs=23.8
Q ss_pred ccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCc
Q 018151 186 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCP 242 (360)
Q Consensus 186 C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCP 242 (360)
|+||.+ +.. +.....+|+|||+|=.+||+++..+.......||
T Consensus 1 CpIc~e-~~~-------------~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FST-------------EENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----T-------------TSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccC-------------CCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 652 2334668999999999999999986543446787
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.4e-06 Score=85.03 Aligned_cols=65 Identities=22% Similarity=0.400 Sum_probs=46.8
Q ss_pred CCCCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 177 SYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 177 ~~~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
|....++..|+||.+-+.... -..+-.+.+-.|.|+|+||+.||.-|---.+ .++||-|+..++-
T Consensus 218 Ptkhl~d~vCaVCg~~~~~s~-------~eegvienty~LsCnHvFHEfCIrGWcivGK--kqtCPYCKekVdl 282 (328)
T KOG1734|consen 218 PTKHLSDSVCAVCGQQIDVSV-------DEEGVIENTYKLSCNHVFHEFCIRGWCIVGK--KQTCPYCKEKVDL 282 (328)
T ss_pred CCCCCCcchhHhhcchheeec-------chhhhhhhheeeecccchHHHhhhhheeecC--CCCCchHHHHhhH
Confidence 444567889999998886311 0011122466799999999999999976655 3799999988873
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.5e-06 Score=88.54 Aligned_cols=65 Identities=25% Similarity=0.377 Sum_probs=41.3
Q ss_pred CCCCccccccchhhhccCCCc--ccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 180 PSDTFKCGLCERFLSQRSPWS--SRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~--s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
..+..+|+||..++.-+.-.. .....+... .-.+.||.|+||..||++|+..-+ ..||+||..+.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~--nYm~tPC~HifH~~CL~~WMd~yk---l~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRR--NYMLTPCHHIFHRQCLLQWMDTYK---LICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhc--cccccchHHHHHHHHHHHHHhhhc---ccCCccCCCCC
Confidence 345678999998875321110 000000000 022459999999999999998543 57999998764
No 28
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.96 E-value=4e-06 Score=86.01 Aligned_cols=53 Identities=25% Similarity=0.506 Sum_probs=41.5
Q ss_pred CCCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 178 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 178 ~~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.......+|+||++-+.+ +..-+....|.|.||..||.+|.. .+||+||--..
T Consensus 170 ~~~tELPTCpVCLERMD~-------------s~~gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDS-------------STTGILTILCNHSFHCSCLMKWWD------SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCc-------------cccceeeeecccccchHHHhhccc------CcChhhhhhcC
Confidence 344577899999999974 333456678999999999999974 48999997654
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.79 E-value=2.1e-05 Score=58.04 Aligned_cols=31 Identities=35% Similarity=0.704 Sum_probs=25.6
Q ss_pred cEeeCCC-----ChhhHHHHHhhcccCCCCCCCCcccc
Q 018151 213 VGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICL 245 (360)
Q Consensus 213 VaVLPCG-----HVFHaeCLEqWl~k~~~~dpsCPlCr 245 (360)
.-++||. |.+|..||++|+.+.. ...||+|.
T Consensus 14 ~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 14 PLVSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred eeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 4478995 9999999999998764 35899995
No 30
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.7e-05 Score=77.60 Aligned_cols=49 Identities=27% Similarity=0.573 Sum_probs=40.0
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.-...|.||++.-.. ....||||+|-=.||..|..+. ..||+||.....
T Consensus 237 ~a~~kC~LCLe~~~~-----------------pSaTpCGHiFCWsCI~~w~~ek----~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN-----------------PSATPCGHIFCWSCILEWCSEK----AECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCCC-----------------CCcCcCcchHHHHHHHHHHccc----cCCCcccccCCC
Confidence 345789999998651 3467999999999999999886 479999988764
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.64 E-value=2.6e-05 Score=60.88 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=36.9
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|+||.+.+.+ ..+++|||+|-..||++|+.+. +..||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~d-----------------PVi~~~G~tyer~~I~~~l~~~---~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRD-----------------PVILPSGHTYERSAIERWLEQN---GGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SS-----------------EEEETTSEEEEHHHHHHHHCTT---SSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhC-----------------ceeCCcCCEEcHHHHHHHHHcC---CCCCCCCCCcCCc
Confidence 46789999999873 4478999999999999999883 3699999888875
No 32
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.4e-05 Score=66.75 Aligned_cols=45 Identities=29% Similarity=0.802 Sum_probs=37.8
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCccccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 246 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk 246 (360)
.+...|+||++.|.. + .+|+|||.|-..||..+.. . ...||.|+.
T Consensus 11 ~~~~~C~iC~~~~~~---------------p--~~l~C~H~~c~~C~~~~~~-~---~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFRE---------------P--VLLPCGHNFCRACLTRSWE-G---PLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhc---------------C--ccccccchHhHHHHHHhcC-C---CcCCcccCC
Confidence 366789999999983 1 6899999999999999987 2 368999994
No 33
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.57 E-value=2.6e-05 Score=79.40 Aligned_cols=56 Identities=30% Similarity=0.732 Sum_probs=43.9
Q ss_pred CCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 179 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 179 ~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.+..+-.|+.|.+.+-.+ ......|||.|+||+.||...+.++. +.+||-|++...
T Consensus 361 ~~e~~L~Cg~CGe~~Glk-------------~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~CrklrS 416 (518)
T KOG1941|consen 361 VEETELYCGLCGESIGLK-------------NERLQALPCSHIFHLRCLQEILENNG--TRSCPNCRKLRS 416 (518)
T ss_pred HHHHhhhhhhhhhhhcCC-------------cccccccchhHHHHHHHHHHHHHhCC--CCCCccHHHHHh
Confidence 345677899999998743 23466899999999999999996653 468999996554
No 34
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.57 E-value=7.1e-06 Score=64.28 Aligned_cols=56 Identities=30% Similarity=0.620 Sum_probs=24.7
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEee---CCCChhhHHHHHhhcccCCC----CCC---CCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL---SCRHVFHAECLEQTTPKTQK----SDP---SCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL---PCGHVFHaeCLEqWl~k~~~----~dp---sCPlCrk~~~~ 250 (360)
...|+||...+.+ .+..+ +.+- .|+++||..||-+||..... -.+ .||.|++.+..
T Consensus 2 ~~~C~IC~~~~~~-----------~~~~p-~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLD-----------DGEIP-DVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-T-----------T------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecC-----------CCCcC-ceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 4579999987541 11122 2222 79999999999999975321 122 59999998863
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.56 E-value=6.1e-05 Score=74.38 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=39.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
+++..|+||...... +.++. .-+-+|||.|-..||+..+.... ..||+|+..+..+
T Consensus 1 md~~~CP~Ck~~~y~-----------np~~k-l~i~~CGH~~C~sCv~~l~~~~~---~~CP~C~~~lrk~ 56 (309)
T TIGR00570 1 MDDQGCPRCKTTKYR-----------NPSLK-LMVNVCGHTLCESCVDLLFVRGS---GSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCCcCCCCCcc-----------Ccccc-cccCCCCCcccHHHHHHHhcCCC---CCCCCCCCccchh
Confidence 467889999986331 11221 12228999999999999876543 5899999988643
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.53 E-value=3.8e-05 Score=77.14 Aligned_cols=49 Identities=27% Similarity=0.771 Sum_probs=40.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
+...|.||.+.|. +..+.||+|.|-.-||...+... |.||+|...+.+.
T Consensus 22 ~lLRC~IC~eyf~-----------------ip~itpCsHtfCSlCIR~~L~~~----p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-----------------IPMITPCSHTFCSLCIRKFLSYK----PQCPTCCVTVTES 70 (442)
T ss_pred HHHHHhHHHHHhc-----------------CceeccccchHHHHHHHHHhccC----CCCCceecccchh
Confidence 3467999999987 23456899999999999999764 7999999998753
No 37
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.52 E-value=8e-05 Score=80.93 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=32.2
Q ss_pred CCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 209 DMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 209 D~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
|.-+..-.+|+|.||++||+.|....+ +||+|+..+.+.
T Consensus 135 DqL~~~~k~c~H~FC~~Ci~sWsR~aq----TCPiDR~EF~~v 173 (1134)
T KOG0825|consen 135 DQLEESEKHTAHYFCEECVGSWSRCAQ----TCPVDRGEFGEV 173 (1134)
T ss_pred HHhhccccccccccHHHHhhhhhhhcc----cCchhhhhhhee
Confidence 334566679999999999999987764 999999999753
No 38
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=6.9e-05 Score=72.71 Aligned_cols=52 Identities=31% Similarity=0.548 Sum_probs=41.6
Q ss_pred CCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHh-hcccCCCCCCCCcccccCccc
Q 018151 179 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ-TTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 179 ~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEq-Wl~k~~~~dpsCPlCrk~~~~ 250 (360)
++..+..|.||++... +..-++|||+|-..||-. |+.+.- --||+||+-...
T Consensus 211 ip~~d~kC~lC~e~~~-----------------~ps~t~CgHlFC~~Cl~~~~t~~k~---~~CplCRak~~p 263 (271)
T COG5574 211 IPLADYKCFLCLEEPE-----------------VPSCTPCGHLFCLSCLLISWTKKKY---EFCPLCRAKVYP 263 (271)
T ss_pred ccccccceeeeecccC-----------------CcccccccchhhHHHHHHHHHhhcc---ccCchhhhhccc
Confidence 4456788999999865 245679999999999999 987753 249999987764
No 39
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.31 E-value=5.9e-05 Score=60.29 Aligned_cols=32 Identities=34% Similarity=0.828 Sum_probs=27.7
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHH
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLE 228 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLE 228 (360)
....|+||.+.|.. .+.++.||||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~---------------~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN---------------SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC---------------ceEEEeCCCeEEeccccc
Confidence 46779999999973 468899999999999986
No 40
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00013 Score=75.94 Aligned_cols=51 Identities=29% Similarity=0.507 Sum_probs=39.0
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCC-CCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ-KSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~-~~dpsCPlCrk~~~~ 250 (360)
...|+||++.-. ++....|||+|--.||-+++.... +.--.||||+..+..
T Consensus 186 ~~~CPICL~~~~-----------------~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS-----------------VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC-----------------cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 789999998843 233445999999999999876653 223479999998864
No 41
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0002 Score=68.25 Aligned_cols=53 Identities=25% Similarity=0.481 Sum_probs=41.9
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+....+|-||++.-. ...|-.|||.|-=-||-||+.... +...||+|+..+..
T Consensus 44 ~~~~FdCNICLd~ak-----------------dPVvTlCGHLFCWpClyqWl~~~~-~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK-----------------DPVVTLCGHLFCWPCLYQWLQTRP-NSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccC-----------------CCEEeecccceehHHHHHHHhhcC-CCeeCCcccccccc
Confidence 456789999998854 134668999999999999997642 23579999999984
No 42
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.04 E-value=0.00028 Score=78.21 Aligned_cols=56 Identities=21% Similarity=0.562 Sum_probs=40.3
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
....|+||.--|.-- ...+|.-+-..|.|-||+.||-+|+.... +.+||+||..+.
T Consensus 1468 G~eECaICYsvL~~v----------dr~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMV----------DRSLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHH----------hccCCccccchhhhhhhHHHHHHHHHhcC--CCCCCccccccc
Confidence 347799998887610 01122233347999999999999998765 479999997653
No 43
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=97.01 E-value=0.0004 Score=67.76 Aligned_cols=50 Identities=32% Similarity=0.822 Sum_probs=41.2
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
...+|+||.+.|.. ..+.+.+|+|||..|..|++....+. .+||+|.+ +.
T Consensus 157 ~~~ncPic~e~l~~-------------s~~~~~~~~CgH~~h~~cf~e~~~~~----y~CP~C~~-~~ 206 (276)
T KOG1940|consen 157 SEFNCPICKEYLFL-------------SFEDAGVLKCGHYMHSRCFEEMICEG----YTCPICSK-PG 206 (276)
T ss_pred ccCCCchhHHHhcc-------------ccccCCccCcccchHHHHHHHHhccC----CCCCcccc-hH
Confidence 34569999998874 34568899999999999999998774 69999999 54
No 44
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00031 Score=71.89 Aligned_cols=53 Identities=26% Similarity=0.611 Sum_probs=41.5
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 248 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~ 248 (360)
++.+|+||++.+.- .++ +.+..|.|||.|-.+|||.|+-+ +..-.||.|....
T Consensus 3 ~g~tcpiclds~~~-----------~g~-hr~vsl~cghlFgs~cie~wl~k--~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTT-----------AGN-HRIVSLQCGHLFGSQCIEKWLGK--KTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeee-----------cCc-eEEeeecccccccHHHHHHHHhh--hhhhhCcccCChh
Confidence 56789999999862 334 35668999999999999999953 3346899998655
No 45
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0011 Score=65.69 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=53.1
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccCCCCcch-hh
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQV-FS 259 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~~~~q~~-~~ 259 (360)
.....|+||+..-. . ...|+|+|.|--.||+-.....+ .+|++||.++.+....|+. ..
T Consensus 5 ~~~~eC~IC~nt~n---------------~--Pv~l~C~HkFCyiCiKGsy~ndk---~~CavCR~pids~i~~~psl~~ 64 (324)
T KOG0824|consen 5 TKKKECLICYNTGN---------------C--PVNLYCFHKFCYICIKGSYKNDK---KTCAVCRFPIDSTIDFEPSLKY 64 (324)
T ss_pred ccCCcceeeeccCC---------------c--CccccccchhhhhhhcchhhcCC---CCCceecCCCCcchhcchhhhh
Confidence 35678999988743 1 24789999999999998776554 4799999999987655544 45
Q ss_pred hhcccCCccccccC
Q 018151 260 RLKNSFPRLRQSCD 273 (360)
Q Consensus 260 ~~rn~~P~l~~~~d 273 (360)
+|+-..|.-+..++
T Consensus 65 ~LK~n~p~~~~~t~ 78 (324)
T KOG0824|consen 65 RLKPNTPEVKRITR 78 (324)
T ss_pred hhcCCCCCCCcccc
Confidence 66666666555444
No 46
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.70 E-value=0.00076 Score=67.03 Aligned_cols=46 Identities=26% Similarity=0.660 Sum_probs=38.6
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..|-||...|.- ....+|||.|-.-||...+... |-||+|+.+..+
T Consensus 26 lrC~IC~~~i~i-----------------p~~TtCgHtFCslCIR~hL~~q----p~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRISI-----------------PCETTCGHTFCSLCIRRHLGTQ----PFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheeec-----------------ceecccccchhHHHHHHHhcCC----CCCccccccHHh
Confidence 569999999872 2355899999999999999774 799999998864
No 47
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.00068 Score=73.12 Aligned_cols=49 Identities=29% Similarity=0.620 Sum_probs=40.0
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccCC
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS 252 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~~ 252 (360)
-+|++|..-.. .+++..|||+|-.+|++..+...+ -.||.|...++.++
T Consensus 644 LkCs~Cn~R~K-----------------d~vI~kC~H~FC~~Cvq~r~etRq---RKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWK-----------------DAVITKCGHVFCEECVQTRYETRQ---RKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchh-----------------hHHHHhcchHHHHHHHHHHHHHhc---CCCCCCCCCCCccc
Confidence 57999985544 245678999999999999997764 58999999999765
No 48
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.25 E-value=0.002 Score=49.11 Aligned_cols=44 Identities=23% Similarity=0.483 Sum_probs=29.1
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPI 243 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPl 243 (360)
....|+|.++.|.+ ++.-..|||+|=.+.|.+++... ....||+
T Consensus 10 ~~~~CPiT~~~~~~----------------PV~s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED----------------PVKSKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS----------------EEEESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred eccCCCCcCChhhC----------------CcCcCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 45789999999873 46677999999999999999432 2468998
No 49
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.0026 Score=69.86 Aligned_cols=48 Identities=35% Similarity=0.727 Sum_probs=37.1
Q ss_pred CCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 179 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 179 ~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
...+...|..|.-.|. .| ..-..|||.||.+|++ .+ ...||-|+.++.
T Consensus 836 ~i~q~skCs~C~~~Ld---------------lP-~VhF~CgHsyHqhC~e---~~----~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 836 QIFQVSKCSACEGTLD---------------LP-FVHFLCGHSYHQHCLE---DK----EDKCPKCLPELR 883 (933)
T ss_pred ceeeeeeecccCCccc---------------cc-eeeeecccHHHHHhhc---cC----cccCCccchhhh
Confidence 3467789999999986 33 3358999999999999 11 257999999654
No 50
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0031 Score=63.42 Aligned_cols=48 Identities=31% Similarity=0.592 Sum_probs=38.7
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCCh-hhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHV-FHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|.||+.... .+.+|||.|. .-..|.+..--.. ..|||||..+.+
T Consensus 289 ~gkeCVIClse~r-----------------dt~vLPCRHLCLCs~Ca~~Lr~q~----n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESR-----------------DTVVLPCRHLCLCSGCAKSLRYQT----NNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCc-----------------ceEEecchhhehhHhHHHHHHHhh----cCCCccccchHh
Confidence 3678999998865 3789999998 8889988875332 479999999986
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0045 Score=62.10 Aligned_cols=59 Identities=29% Similarity=0.686 Sum_probs=41.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEee-CCCChhhHHHHHhhcccCC---CCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQ---KSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL-PCGHVFHaeCLEqWl~k~~---~~dpsCPlCrk~~~ 249 (360)
..+.+|+||.+.+..+. . .+..-+.| +|-|.|-..||.+|-...+ +....||+||....
T Consensus 159 s~~k~CGICme~i~ek~--~--------~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA--A--------SERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccc--h--------hhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46788999999988542 1 11223344 5999999999999974332 12368999998765
No 52
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0026 Score=64.31 Aligned_cols=50 Identities=20% Similarity=0.531 Sum_probs=40.9
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
+..|+||+..|.. ...+--|+|-|..+||..-+...+ ..||.||+.++.+
T Consensus 43 ~v~c~icl~llk~----------------tmttkeClhrfc~~ci~~a~r~gn---~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKK----------------TMTTKECLHRFCFDCIWKALRSGN---NECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHh----------------hcccHHHHHHHHHHHHHHHHHhcC---CCCchHHhhcccc
Confidence 4569999999973 134567999999999999988765 6899999998743
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.67 E-value=0.0094 Score=61.54 Aligned_cols=50 Identities=20% Similarity=0.448 Sum_probs=39.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..+.|-||-+.-. .|.+=||||..-..||..|-.... ..+||.||-+++.
T Consensus 368 TFeLCKICaendK-----------------dvkIEPCGHLlCt~CLa~WQ~sd~--gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 368 TFELCKICAENDK-----------------DVKIEPCGHLLCTSCLAAWQDSDE--GQTCPFCRCEIKG 417 (563)
T ss_pred hHHHHHHhhccCC-----------------CcccccccchHHHHHHHhhcccCC--CCCCCceeeEecc
Confidence 4567999977632 367789999999999999975443 3699999999974
No 54
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0056 Score=62.49 Aligned_cols=51 Identities=31% Similarity=0.662 Sum_probs=41.6
Q ss_pred CCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 179 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 179 ~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....+..|.||.+.|.. ..++||||.|-..||++-+... ..||+|+..+.+
T Consensus 80 ~~~sef~c~vc~~~l~~-----------------pv~tpcghs~c~~Cl~r~ld~~----~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYP-----------------PVVTPCGHSFCLECLDRSLDQE----TECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCC-----------------CccccccccccHHHHHHHhccC----CCCccccccccc
Confidence 33678999999888862 3366999999999999977643 689999999975
No 55
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.49 E-value=0.009 Score=56.84 Aligned_cols=71 Identities=20% Similarity=0.476 Sum_probs=49.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccCC-----CCc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS-----PDQ 255 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~~-----~~q 255 (360)
.....|||+...|..+ ..-+++.+|||||=..||++.- + +..||+|...+...+ +..
T Consensus 111 ~~~~~CPvt~~~~~~~-------------~~fv~l~~cG~V~s~~alke~k-~----~~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGK-------------HKFVYLRPCGCVFSEKALKELK-K----SKKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred CceeECCCCCcccCCc-------------eeEEEEcCCCCEeeHHHHHhhc-c----cccccccCCccccCCEEEecCCc
Confidence 4557899999998643 3347778999999999999993 2 247999999997543 222
Q ss_pred chhhhhcccCCccc
Q 018151 256 QVFSRLKNSFPRLR 269 (360)
Q Consensus 256 ~~~~~~rn~~P~l~ 269 (360)
..+..++.++-.++
T Consensus 173 ee~~~l~~~~~~~~ 186 (260)
T PF04641_consen 173 EELEKLRERMEERK 186 (260)
T ss_pred cHHHHHHHHHHHHH
Confidence 25555555543333
No 56
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=0.0082 Score=66.30 Aligned_cols=37 Identities=30% Similarity=0.564 Sum_probs=30.1
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTP 232 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~ 232 (360)
-.+..|.+|...|..+ +--+.||||.||.+||++-+.
T Consensus 815 ep~d~C~~C~~~ll~~---------------pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK---------------PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcC---------------cceeeeccchHHHHHHHHHHH
Confidence 4668899999999732 355889999999999988654
No 57
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.0013 Score=67.21 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=44.8
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccCCC
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 253 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~~~ 253 (360)
+.-+..|.||.+.|.+. ...+..+-|||+||.+||++|+.+.. .||.|++.+..+-.
T Consensus 193 ~slv~sl~I~~~slK~~-------------y~k~~~~~~g~~~~~~kL~k~L~~~~----kl~~~~rel~~~~~ 249 (465)
T KOG0827|consen 193 SSLVGSLSICFESLKQN-------------YDKISAIVCGHIYHHGKLSKWLATKR----KLPSCRRELPKNGF 249 (465)
T ss_pred HHHHhhhHhhHHHHHHH-------------HHHHHHHhhcccchhhHHHHHHHHHH----HhHHHHhhhhhhhH
Confidence 34567899999999852 23456779999999999999998853 79999999974433
No 58
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.019 Score=56.21 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=44.2
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
.....|+||...|++. ++-+.+-+|||||-.+|.|..+.+. -.||+|-+.+.+.
T Consensus 219 s~ryiCpvtrd~LtNt-------------~~ca~Lr~sg~Vv~~ecvEklir~D----~v~pv~d~plkdr 272 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNT-------------TPCAVLRPSGHVVTKECVEKLIRKD----MVDPVTDKPLKDR 272 (303)
T ss_pred ccceecccchhhhcCc-------------cceEEeccCCcEeeHHHHHHhcccc----ccccCCCCcCccc
Confidence 3668899999999853 3335566899999999999999885 4899999999863
No 59
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.023 Score=55.16 Aligned_cols=52 Identities=29% Similarity=0.601 Sum_probs=40.4
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCC----CCCCCcccccCcc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK----SDPSCPICLRLQE 249 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~----~dpsCPlCrk~~~ 249 (360)
..+|.+|.-.|.+. | ...|.|=|+||=.||++|-..-.. ....||-|..++-
T Consensus 50 ~pNC~LC~t~La~g------------d---t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASG------------D---TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccC------------c---ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 46799999999852 3 457999999999999999643221 2367999999986
No 60
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.51 E-value=0.026 Score=50.26 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=27.0
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCC------ChhhHHHHHhhc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR------HVFHAECLEQTT 231 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCG------HVFHaeCLEqWl 231 (360)
....|.||.+.+.. ..-+..++|| |+||++|++.|.
T Consensus 25 ~~~EC~IC~~~I~~--------------~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 25 CTVECQICFDRIDN--------------NDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred cCeeehhhhhhhhc--------------CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 46789999999872 1124455666 889999999995
No 61
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.46 E-value=0.013 Score=58.53 Aligned_cols=55 Identities=22% Similarity=0.545 Sum_probs=40.8
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhccc------------------C-CCCCCCC
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK------------------T-QKSDPSC 241 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k------------------~-~~~dpsC 241 (360)
.....|.||+--|. +.+...+.+|=|.||..||...+.. . ......|
T Consensus 113 ~p~gqCvICLygfa--------------~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavc 178 (368)
T KOG4445|consen 113 HPNGQCVICLYGFA--------------SSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVC 178 (368)
T ss_pred CCCCceEEEEEeec--------------CCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 35578999999887 3345778899999999999766542 1 0112469
Q ss_pred cccccCcc
Q 018151 242 PICLRLQE 249 (360)
Q Consensus 242 PlCrk~~~ 249 (360)
|||+-.++
T Consensus 179 pVcre~i~ 186 (368)
T KOG4445|consen 179 PVCRERIK 186 (368)
T ss_pred hHhhhhcc
Confidence 99999886
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.86 E-value=0.026 Score=53.87 Aligned_cols=46 Identities=30% Similarity=0.701 Sum_probs=37.5
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..|.||.+++.. ++ |..|||.|...|.-.-+.+. +.|-+|.+....
T Consensus 197 F~C~iCKkdy~s---------------pv--vt~CGH~FC~~Cai~~y~kg----~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYES---------------PV--VTECGHSFCSLCAIRKYQKG----DECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccc---------------hh--hhhcchhHHHHHHHHHhccC----Ccceecchhhcc
Confidence 589999999872 22 56899999999998877665 699999988753
No 63
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=93.82 E-value=0.022 Score=45.30 Aligned_cols=46 Identities=24% Similarity=0.688 Sum_probs=23.8
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
..|.+|...|.+ ++-+..|.|+|-..|+.+-+.. .||+|..+.-++
T Consensus 8 LrCs~C~~~l~~----------------pv~l~~CeH~fCs~Ci~~~~~~------~CPvC~~Paw~q 53 (65)
T PF14835_consen 8 LRCSICFDILKE----------------PVCLGGCEHIFCSSCIRDCIGS------ECPVCHTPAWIQ 53 (65)
T ss_dssp TS-SSS-S--SS-----------------B---SSS--B-TTTGGGGTTT------B-SSS--B-S-S
T ss_pred cCCcHHHHHhcC----------------CceeccCccHHHHHHhHHhcCC------CCCCcCChHHHH
Confidence 569999999873 4567799999999999886653 499999987543
No 64
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.80 E-value=0.043 Score=63.93 Aligned_cols=55 Identities=27% Similarity=0.464 Sum_probs=36.8
Q ss_pred CCCCccccccch-hhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCC------CCCCCCcccccCcc
Q 018151 180 PSDTFKCGLCER-FLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ------KSDPSCPICLRLQE 249 (360)
Q Consensus 180 ~~d~~~C~ICle-~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~------~~dpsCPlCrk~~~ 249 (360)
|--++.|.||.. .|. ..+.-.|-|+|+||.+|....+...= ..-..||+|+..+.
T Consensus 3483 QD~DDmCmICFTE~L~---------------AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALS---------------AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccCceEEEEehhhhC---------------CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 334567888863 333 12455799999999999876654321 11147999999886
No 65
>PHA02862 5L protein; Provisional
Probab=93.23 E-value=0.062 Score=48.90 Aligned_cols=47 Identities=17% Similarity=0.421 Sum_probs=34.6
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCC-----ChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCG-----HVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
...|=||.+.-.+ . +-||. -.-|.+||++|+...+ .-.|++|+..|.
T Consensus 2 ~diCWIC~~~~~e----------------~--~~PC~C~GS~K~VHq~CL~~WIn~S~--k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDE----------------R--NNFCGCNEEYKVVHIKCMQLWINYSK--KKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCC----------------C--cccccccCcchhHHHHHHHHHHhcCC--CcCccCCCCeEE
Confidence 4679999887331 1 23554 4579999999997654 468999999996
No 66
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.056 Score=51.36 Aligned_cols=54 Identities=22% Similarity=0.495 Sum_probs=42.5
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
....|.||.++|+.. .+....++|.|||.+=..|+...+.... ..||.||....
T Consensus 2 ~~~~c~~c~~~~s~~-----------~~~~~p~~l~c~h~~c~~c~~~l~~~~~---i~cpfcR~~~~ 55 (296)
T KOG4185|consen 2 SFPECEICNEDYSSE-----------DGDHIPRVLKCGHTICQNCASKLLGNSR---ILCPFCRETTE 55 (296)
T ss_pred CCCceeecCcccccc-----------CcccCCcccccCceehHhHHHHHhcCce---eeccCCCCccc
Confidence 346799999999832 1334678899999999999999876553 57999999963
No 67
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.96 E-value=0.092 Score=48.20 Aligned_cols=52 Identities=25% Similarity=0.485 Sum_probs=36.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCC---hhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRH---VFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGH---VFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..+..|-||.+.-. + ...-=.|.. .-|.+||++|+.... +..|++|...+.-
T Consensus 6 ~~~~~CRIC~~~~~---~-------------~~~PC~CkGs~k~VH~sCL~rWi~~s~--~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD---V-------------VTNYCNCKNENKIVHKECLEEWINTSK--NKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC---C-------------ccCCcccCCCchHHHHHHHHHHHhcCC--CCcccccCCeEEE
Confidence 45678999976632 1 112223555 569999999998764 5789999999973
No 68
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.60 E-value=0.076 Score=53.43 Aligned_cols=45 Identities=33% Similarity=0.734 Sum_probs=37.1
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccC
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 247 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~ 247 (360)
..|++|...|.+ .+..--|+|.|-.+||+.-|... |..||.|-+.
T Consensus 275 LkCplc~~Llrn----------------p~kT~cC~~~fc~eci~~al~ds---Df~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLRN----------------PMKTPCCGHTFCDECIGTALLDS---DFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhhC----------------cccCccccchHHHHHHhhhhhhc---cccCCCcccc
Confidence 689999999974 23345699999999999998776 4799999873
No 69
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.44 E-value=0.07 Score=51.34 Aligned_cols=32 Identities=34% Similarity=0.859 Sum_probs=27.4
Q ss_pred CcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 212 VVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 212 vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
..-++.|+|||-..|+..-.+. .||+|++.+.
T Consensus 17 ~f~LTaC~HvfC~~C~k~~~~~------~C~lCkk~ir 48 (233)
T KOG4739|consen 17 PFFLTACRHVFCEPCLKASSPD------VCPLCKKSIR 48 (233)
T ss_pred ceeeeechhhhhhhhcccCCcc------ccccccceee
Confidence 4668899999999999887654 6999999976
No 70
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.90 E-value=0.12 Score=53.06 Aligned_cols=49 Identities=18% Similarity=0.487 Sum_probs=37.4
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhh--cccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT--TPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqW--l~k~~~~dpsCPlCrk~~~~ 250 (360)
.+.+.|.||-+.+++ ++++||+|-.---|.-.. |-.. -.||+|+.++.+
T Consensus 59 Een~~C~ICA~~~TY-----------------s~~~PC~H~~CH~Ca~RlRALY~~----K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTTY-----------------SARYPCGHQICHACAVRLRALYMQ----KGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCceE-----------------EEeccCCchHHHHHHHHHHHHHhc----cCCCccccccce
Confidence 466889999999884 679999999877775332 2222 279999999975
No 71
>PHA03096 p28-like protein; Provisional
Probab=91.87 E-value=0.082 Score=51.92 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=42.8
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeC-CCChhhHHHHHhhcccCCCCCCCCcccccCcccCCCCcchhhhhc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQVFSRLK 262 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLP-CGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~~~~q~~~~~~r 262 (360)
..|+||++....+.+ ....-+.|+ |-|+|-..|+..|-.... ..-+||.|+..-.-....+.....++
T Consensus 179 k~c~ic~e~~~~k~~----------~~~~fgil~~c~h~fc~~ci~~wr~~~~-~~e~~~~c~~~~~~~~~v~~~~~~~~ 247 (284)
T PHA03096 179 KICGICLENIKAKYI----------IKKYYGILSEIKHEFNIFCIKIWMTESL-YKETEPENRRLNTVIVFIEKINEDLK 247 (284)
T ss_pred hhcccchhhhhhhcc----------ccccccccccCCcHHHHHHHHHHHHhhh-hcccCccccchhhHHHHHhhcchhhh
Confidence 679999988775421 112345564 999999999999976543 22345555444332222222344555
Q ss_pred ccCCc
Q 018151 263 NSFPR 267 (360)
Q Consensus 263 n~~P~ 267 (360)
+.+|.
T Consensus 248 ~~ips 252 (284)
T PHA03096 248 NNIPS 252 (284)
T ss_pred ccCCc
Confidence 55543
No 72
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=91.63 E-value=0.1 Score=52.82 Aligned_cols=48 Identities=27% Similarity=0.675 Sum_probs=38.6
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
....|+||...|.+ ++....|||.|-+.|+..|+.. ++.||.|+....
T Consensus 20 ~~l~C~~C~~vl~~----------------p~~~~~cgh~fC~~C~~~~~~~----~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 20 ENLLCPICMSVLRD----------------PVQTTTCGHRFCAGCLLESLSN----HQKCPVCRQELT 67 (391)
T ss_pred ccccCccccccccC----------------CCCCCCCCCcccccccchhhcc----CcCCcccccccc
Confidence 44789999999873 1223689999999999999977 368999987775
No 73
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=91.15 E-value=0.035 Score=40.64 Aligned_cols=42 Identities=26% Similarity=0.587 Sum_probs=25.6
Q ss_pred ccccchhhhccCCCcccccccCCCCCCcEeeCCCC-----hhhHHHHHhhcccCCCCCCCCccc
Q 018151 186 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRH-----VFHAECLEQTTPKTQKSDPSCPIC 244 (360)
Q Consensus 186 C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGH-----VFHaeCLEqWl~k~~~~dpsCPlC 244 (360)
|-||++.-.+. . .-+.||.= ..|.+||++|+.... ...|++|
T Consensus 1 CrIC~~~~~~~-------------~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED-------------E--PLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS-------------S---EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCCC-------------C--ceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 67888875531 1 22456542 569999999998743 3579998
No 74
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=0.09 Score=52.40 Aligned_cols=59 Identities=27% Similarity=0.627 Sum_probs=42.6
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc-CCCCcchhhhh
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE-NSPDQQVFSRL 261 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~-~~~~q~~~~~~ 261 (360)
...|.||.+.+.. ++ |..|+|.|-..|.-+-+.+. +.|+||.++... -.+..-++..|
T Consensus 241 Pf~c~icr~~f~~---------------pV--vt~c~h~fc~~ca~~~~qk~----~~c~vC~~~t~g~~~~akeL~~~L 299 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---------------PV--VTKCGHYFCEVCALKPYQKG----EKCYVCSQQTHGSFNVAKELLVSL 299 (313)
T ss_pred Ccccccccccccc---------------ch--hhcCCceeehhhhccccccC----CcceecccccccccchHHHHHHHH
Confidence 3569999999872 22 56999999999998887775 589999998863 22233344444
Q ss_pred c
Q 018151 262 K 262 (360)
Q Consensus 262 r 262 (360)
.
T Consensus 300 ~ 300 (313)
T KOG1813|consen 300 K 300 (313)
T ss_pred H
Confidence 3
No 75
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=0.18 Score=49.89 Aligned_cols=51 Identities=18% Similarity=0.447 Sum_probs=38.9
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
....+|++|.++=+ + +-...+|||+|---|+..-..... -.+||.|.....
T Consensus 237 t~~~~C~~Cg~~Pt---------------i-P~~~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPT---------------I-PHVIGKCGHIYCYYCIATSRLWDA--SFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCC---------------C-Ceeeccccceeehhhhhhhhcchh--hcccCccCCCCc
Confidence 46788999998844 1 233568999999999998876532 158999998776
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.52 E-value=0.27 Score=37.00 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=22.3
Q ss_pred ccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 186 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 186 C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
|++|-+.|..+ | ....-=+||+-+-..|....+... +..||-||++|.
T Consensus 1 cp~C~e~~d~~------------d-~~~~PC~Cgf~IC~~C~~~i~~~~---~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDET------------D-KDFYPCECGFQICRFCYHDILENE---GGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CC------------C-TT--SSTTS----HHHHHHHTTSS----SB-TTT--B--
T ss_pred CCCcccccccC------------C-CccccCcCCCcHHHHHHHHHHhcc---CCCCCCCCCCCC
Confidence 78898888531 1 112223589999999999888643 368999999873
No 77
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=89.06 E-value=0.19 Score=53.79 Aligned_cols=52 Identities=23% Similarity=0.540 Sum_probs=38.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC-CCCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~-~~~dpsCPlCrk~~~ 249 (360)
.....|+||.++-.+ ..+-.|.|+|...||.+.+..- ...+-+||+|-..+.
T Consensus 534 k~~~~C~lc~d~aed-----------------~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED-----------------YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhh-----------------hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 355789999988542 3356899999999998776432 223479999998885
No 78
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=88.82 E-value=0.14 Score=51.59 Aligned_cols=51 Identities=22% Similarity=0.597 Sum_probs=41.8
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
....+|.+|...|-+ ...+.-|=|.|-..||-..|... ..||+|...+...
T Consensus 13 n~~itC~LC~GYliD----------------ATTI~eCLHTFCkSCivk~l~~~----~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLID----------------ATTITECLHTFCKSCIVKYLEES----KYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeec----------------chhHHHHHHHHHHHHHHHHHHHh----ccCCccceeccCc
Confidence 456789999999872 23456899999999999999885 4899999998754
No 79
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.56 E-value=0.2 Score=55.49 Aligned_cols=52 Identities=23% Similarity=0.412 Sum_probs=33.9
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCP 242 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCP 242 (360)
....|.||+....+ |-.|--.+-.. -..-+.||||.|..|...|+..+. .||
T Consensus 1017 ri~~~~~~~~~~~~-C~~C~l~V~gs----s~~Cg~C~Hv~H~sc~~eWf~~gd----~Cp 1068 (1081)
T KOG0309|consen 1017 RITQCAICKGFTFQ-CAICHLAVRGS----SNFCGTCGHVGHTSCMMEWFRTGD----VCP 1068 (1081)
T ss_pred eeeeccccccceee-eeeEeeEeecc----chhhccccccccHHHHHHHHhcCC----cCC
Confidence 44668888887765 33332111111 122368999999999999998874 666
No 80
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=88.43 E-value=0.21 Score=38.64 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=24.4
Q ss_pred cEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 213 VGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 213 VaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
-.+|||||+.=..|.+-+-- ..||+|-+.+..
T Consensus 20 ~~~~pCgH~I~~~~f~~~rY------ngCPfC~~~~~~ 51 (55)
T PF14447_consen 20 GTVLPCGHLICDNCFPGERY------NGCPFCGTPFEF 51 (55)
T ss_pred cccccccceeeccccChhhc------cCCCCCCCcccC
Confidence 45899999988877665421 479999998874
No 81
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=87.50 E-value=0.42 Score=43.98 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=13.7
Q ss_pred CCCCcccccCcccCCCCcc
Q 018151 238 DPSCPICLRLQEENSPDQQ 256 (360)
Q Consensus 238 dpsCPlCrk~~~~~~~~q~ 256 (360)
...||+||..+..--..++
T Consensus 80 ~L~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTVVEP 98 (162)
T ss_pred cccCccccCceeceEEchH
Confidence 4689999999976443444
No 82
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=0.22 Score=50.52 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=31.0
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|.||++... .+.-+||||+=- |..-.. +.+.||+||..+..
T Consensus 304 ~p~lcVVcl~e~~-----------------~~~fvpcGh~cc--ct~cs~-----~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPK-----------------SAVFVPCGHVCC--CTLCSK-----HLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCcc-----------------ceeeecCCcEEE--chHHHh-----hCCCCchhHHHHHH
Confidence 4578999998754 166889999932 333322 23679999988763
No 83
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.31 E-value=0.27 Score=54.34 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=30.6
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT 234 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~ 234 (360)
+..|..|.+.... .......+.|+.|||+||..|+.--..+.
T Consensus 784 e~rc~~c~~~~l~----------~~~~~~~~~v~~c~h~yhk~c~~~~~~~~ 825 (846)
T KOG2066|consen 784 EERCSSCFEPNLP----------SGAAFDSVVVFHCGHMYHKECLMMESLRN 825 (846)
T ss_pred hhhhhhhcccccc----------cCcccceeeEEEccchhhhcccccHHHhc
Confidence 4579999887642 12224568899999999999998766554
No 84
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.25 E-value=0.27 Score=38.65 Aligned_cols=46 Identities=22% Similarity=0.538 Sum_probs=31.1
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCCh-hhHHH-HHhhcccCCCCCCCCcccccCccc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAEC-LEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHV-FHaeC-LEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..|.||.+.--+ ..+-.|||. +--+| |++|.... -.||+||+++..
T Consensus 8 dECTICye~pvd-----------------sVlYtCGHMCmCy~Cg~rl~~~~~----g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVD-----------------SVLYTCGHMCMCYACGLRLKKALH----GCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcch-----------------HHHHHcchHHhHHHHHHHHHHccC----CcCcchhhHHHH
Confidence 789999876321 124479997 55566 45665432 589999998864
No 85
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.67 E-value=0.31 Score=53.21 Aligned_cols=86 Identities=19% Similarity=0.447 Sum_probs=55.0
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc---CC-CCcch
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE---NS-PDQQV 257 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~---~~-~~q~~ 257 (360)
+...|.||+..|... ... ...|-|||+.-.+|++.-... +|| |+.+... .. .+-.-
T Consensus 10 ~~l~c~ic~n~f~~~------------~~~-Pvsl~cghtic~~c~~~lyn~------scp-~~~De~~~~~~~~e~p~n 69 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQ------------RLE-PVSLQCGHTICGHCVQLLYNA------SCP-TKRDEDSSLMQLKEEPRN 69 (861)
T ss_pred HHhhchHHHHHHHHH------------hcC-cccccccchHHHHHHHhHhhc------cCC-CCccccchhcChhhcchh
Confidence 557899997766521 112 336899999999999988754 799 7665541 11 12234
Q ss_pred hhhhcccCCc--cccccCCCC-CCC--CCCCCCCC
Q 018151 258 FSRLKNSFPR--LRQSCDNGQ-SRP--WGCPQAGG 287 (360)
Q Consensus 258 ~~~~rn~~P~--l~~~~d~G~-sr~--wg~a~~gd 287 (360)
+..|+..+++ +.=..+-|. ..+ |.|-|-||
T Consensus 70 ~alL~~~~d~~~~~~a~~~g~~ispe~~~~~qlg~ 104 (861)
T KOG3161|consen 70 YALLRREHDAQIVHIAMEAGLRISPEQWSSLQLGD 104 (861)
T ss_pred HHHHHhhcchhhhhcccCCcccCCHHHHHHHHHHH
Confidence 5666667777 444555663 333 88888884
No 86
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.04 E-value=0.84 Score=45.54 Aligned_cols=52 Identities=19% Similarity=0.486 Sum_probs=37.9
Q ss_pred cccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 185 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 185 ~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
.|++|.-+-. . +.++ ..-+-+|||..-..|.+..+..+. ..||-|+..+..+
T Consensus 2 ~Cp~CKt~~Y-~----------np~l-k~~in~C~H~lCEsCvd~iF~~g~---~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRY-L----------NPDL-KLMINECGHRLCESCVDRIFSLGP---AQCPECMVILRKN 53 (300)
T ss_pred CCccccccee-c----------Cccc-eeeeccccchHHHHHHHHHHhcCC---CCCCcccchhhhc
Confidence 5888875532 1 2232 233348999999999999998874 7899999988644
No 88
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=84.97 E-value=0.48 Score=52.87 Aligned_cols=57 Identities=26% Similarity=0.686 Sum_probs=42.2
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCC---CCCCCcccccCcc
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK---SDPSCPICLRLQE 249 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~---~dpsCPlCrk~~~ 249 (360)
..+...|.||.+.+... .++..=-.|=||||..||..|-...++ ....||-|.....
T Consensus 188 ~~~~yeCmIC~e~I~~t-------------~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRT-------------APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeecccc-------------CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 35668899999998743 223444568899999999999766443 2468999996554
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=83.84 E-value=0.59 Score=50.89 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=38.4
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
..|.||.+ ++ ...+.+|||.|-.+|+.+-+...+. ..||+|+..+.++
T Consensus 455 ~~c~ic~~-~~-----------------~~~it~c~h~~c~~c~~~~i~~~~~--~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LD-----------------SFFITRCGHDFCVECLKKSIQQSEN--APCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cc-----------------cceeecccchHHHHHHHhccccccC--CCCcHHHHHHHHH
Confidence 89999999 33 1346699999999999998877652 3899999998753
No 90
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.69 E-value=0.95 Score=42.97 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=27.6
Q ss_pred eeCCCChhhHHHHHhhcccC----CCCC---CCCcccccCccc
Q 018151 215 VLSCRHVFHAECLEQTTPKT----QKSD---PSCPICLRLQEE 250 (360)
Q Consensus 215 VLPCGHVFHaeCLEqWl~k~----~~~d---psCPlCrk~~~~ 250 (360)
-..||.-||.-||-.|+... +..+ -.||.|.+++..
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 46899999999999998643 2122 369999998864
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=80.97 E-value=1.2 Score=32.29 Aligned_cols=26 Identities=27% Similarity=0.874 Sum_probs=15.7
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCccc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPIC 244 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlC 244 (360)
.|+=-+|..|++.++.... ++.||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~~--~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHRS--NPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT-S--S-B-TTT
T ss_pred ccCchHHHHHHHHHHhcCC--CCCCcCC
Confidence 3666699999999987654 3479988
No 92
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=79.09 E-value=0.88 Score=48.97 Aligned_cols=33 Identities=36% Similarity=0.809 Sum_probs=25.0
Q ss_pred CCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 211 PVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 211 ~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+..=..|+++||..|++.-- +.||.|.+....
T Consensus 530 ~~~rC~~C~avfH~~C~~r~s-------~~CPrC~R~q~r 562 (580)
T KOG1829|consen 530 NTRRCSTCLAVFHKKCLRRKS-------PCCPRCERRQKR 562 (580)
T ss_pred cceeHHHHHHHHHHHHHhccC-------CCCCchHHHHHH
Confidence 345557899999999987542 359999887764
No 93
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.07 E-value=1.2 Score=44.02 Aligned_cols=53 Identities=17% Similarity=0.392 Sum_probs=39.7
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccCC
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS 252 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~~ 252 (360)
.-...|+|=.-.+.. ...-+++..|||||-+.-|.+.-.. .|++|...|.+.+
T Consensus 109 ~a~fiCPvtgleMng-------------~~~F~~l~~CGcV~SerAlKeikas------~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNG-------------KYRFCALRCCGCVFSERALKEIKAS------VCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecc-------------eEEEEEEeccceeccHHHHHHhhhc------cccccCCcccccC
Confidence 445678887666653 2333667799999999999998633 7999999998654
No 94
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=76.70 E-value=2.1 Score=33.08 Aligned_cols=35 Identities=23% Similarity=0.576 Sum_probs=25.6
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEe-eCCCChhhHHHHHhh
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGV-LSCRHVFHAECLEQT 230 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaV-LPCGHVFHaeCLEqW 230 (360)
....|.+|.+.|.. ...+.+ -.||=.||.+|-+.-
T Consensus 4 ~~~~C~~Cg~~~~~--------------~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 4 EGCKCPVCGKKFKD--------------GDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cCccChhhCCcccC--------------CCCEEECCCCCCcccHHHHhhC
Confidence 35679999999972 123434 459999999997764
No 95
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.26 E-value=0.66 Score=46.68 Aligned_cols=43 Identities=23% Similarity=0.569 Sum_probs=29.7
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChh-hHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVF-HAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVF-HaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
...|.||.+.-.+ -..|+|||.- -.+|-..+ ..|||||+-+..
T Consensus 300 ~~LC~ICmDaP~D-----------------CvfLeCGHmVtCt~CGkrm--------~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD-----------------CVFLECGHMVTCTKCGKRM--------NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc-----------------eEEeecCcEEeehhhcccc--------ccCchHHHHHHH
Confidence 5679999887442 4589999963 34444333 379999987764
No 96
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.16 E-value=0.79 Score=42.90 Aligned_cols=30 Identities=27% Similarity=0.607 Sum_probs=24.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhH
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHA 224 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHa 224 (360)
.+...|.||+|+|.+ + +.|+.|||==+||.
T Consensus 175 ddkGECvICLEdL~~------------G--dtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEA------------G--DTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccC------------C--CceeccceEEEeec
Confidence 356789999999984 3 46999999999985
No 97
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.82 E-value=1.9 Score=44.52 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=29.7
Q ss_pred CCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 210 MPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 210 ~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
..+...|.||||.-.+-|++....... ...||.|=....
T Consensus 347 eNPPm~L~CGHVISkdAlnrLS~ng~~-sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 347 ENPPMMLICGHVISKDALNRLSKNGSQ-SFKCPYCPVEQL 385 (394)
T ss_pred CCCCeeeeccceecHHHHHHHhhCCCe-eeeCCCCCcccC
Confidence 345568999999999999999866542 467999965544
No 98
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.71 E-value=1.7 Score=45.41 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=37.6
Q ss_pred CCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC----CCCCCCCccccc
Q 018151 179 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT----QKSDPSCPICLR 246 (360)
Q Consensus 179 ~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~----~~~dpsCPlCrk 246 (360)
+......|.||.+.... ..-...|||+|||-..|+...+.-. ...-..||-|.-
T Consensus 180 F~~slf~C~ICf~e~~G--------------~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 180 FVNSLFDCCICFEEQMG--------------QHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HHhhcccceeeehhhcC--------------cceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 44567899999887541 1236689999999999999987532 222356876543
No 99
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.60 E-value=1.7 Score=43.03 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=42.6
Q ss_pred CCCCCCccccccchhhhccCCCcccccccCCCCCC-cEeeCCC-----ChhhHHHHHhhcccCCCCC----CCCcccccC
Q 018151 178 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPV-VGVLSCR-----HVFHAECLEQTTPKTQKSD----PSCPICLRL 247 (360)
Q Consensus 178 ~~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~v-VaVLPCG-----HVFHaeCLEqWl~k~~~~d----psCPlCrk~ 247 (360)
..+..+..|=||...=++ ... .=|-||. |--|..||..|+.+++..+ -.||-|..+
T Consensus 15 ~~~e~eR~CWiCF~TdeD--------------n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 15 DNQELERCCWICFATDED--------------NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred CccccceeEEEEeccCcc--------------cchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 446677889999877442 222 2355774 7799999999998876533 369999999
Q ss_pred ccc
Q 018151 248 QEE 250 (360)
Q Consensus 248 ~~~ 250 (360)
|.-
T Consensus 81 Yii 83 (293)
T KOG3053|consen 81 YII 83 (293)
T ss_pred hee
Confidence 974
No 100
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=74.24 E-value=1.8 Score=40.17 Aligned_cols=50 Identities=32% Similarity=0.761 Sum_probs=32.5
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCC-CCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCc
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDM-PVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 248 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~-~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~ 248 (360)
+..+..|-||... +-=-|| +. .++.=..|+-+||.+|..+ . .||-|.+.-
T Consensus 149 ~~kGfiCe~C~~~-~~IfPF---------~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R~~ 199 (202)
T PF13901_consen 149 QQKGFICEICNSD-DIIFPF---------QIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCARRQ 199 (202)
T ss_pred HhCCCCCccCCCC-CCCCCC---------CCCCeeeCCcCccccchhhcCC----C-----CCCCcHhHh
Confidence 4456778888643 211233 33 3444467999999999983 1 599997643
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=67.34 E-value=2.5 Score=41.80 Aligned_cols=53 Identities=19% Similarity=0.543 Sum_probs=38.4
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEee--C-CCChhhHHHHHhhcccCCCCCCCCc--ccccCcccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--S-CRHVFHAECLEQTTPKTQKSDPSCP--ICLRLQEEN 251 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL--P-CGHVFHaeCLEqWl~k~~~~dpsCP--lCrk~~~~~ 251 (360)
.+..|+||..+-. -. +.+..| | |=|-+...|.+..+..+. ..|| -|.+.+...
T Consensus 9 ~d~~CPvCksDrY-Ln-------------Pdik~linPECyHrmCESCvdRIFs~Gp---AqCP~~gC~kILRK~ 66 (314)
T COG5220 9 EDRRCPVCKSDRY-LN-------------PDIKILINPECYHRMCESCVDRIFSRGP---AQCPYKGCGKILRKI 66 (314)
T ss_pred hcccCCccccccc-cC-------------CCeEEEECHHHHHHHHHHHHHHHhcCCC---CCCCCccHHHHHHHh
Confidence 4468999987643 11 223333 5 999999999999998875 5799 898877543
No 102
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=66.99 E-value=2.7 Score=42.79 Aligned_cols=45 Identities=27% Similarity=0.653 Sum_probs=32.0
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.+-|.-|...+.- --+++||-|||-.+|...=- +-.||.|...+.
T Consensus 90 VHfCd~Cd~PI~I----------------YGRmIPCkHvFCl~CAr~~~------dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAI----------------YGRMIPCKHVFCLECARSDS------DKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCccee----------------eecccccchhhhhhhhhcCc------cccCcCcccHHH
Confidence 4568888777651 13467999999999976432 237999987764
No 103
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=66.08 E-value=4.3 Score=38.14 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=35.6
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCC-----ChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCG-----HVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
++..|-||........ .+ .-..||. +..|..|++.|+.... +..|.+|...+.
T Consensus 77 ~~~~cRIc~~~~~~~~----------~~---~l~~pC~C~g~l~~vH~~cl~~W~~~~~--~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 77 SGPICRICHEEDEESN----------GL---LLISPCSCKGSLAYVHRSCLEKWFSIKG--NITCEICKSFFI 134 (323)
T ss_pred CCCcEEEEeccccccc----------cc---ccccCccccCcHHHHHHHHHHhhhcccc--Ceeeecccccce
Confidence 3678999998754210 00 1133442 4569999999998543 578999999875
No 104
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=64.96 E-value=0.61 Score=33.31 Aligned_cols=48 Identities=25% Similarity=0.530 Sum_probs=30.4
Q ss_pred cccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC--CCCCCCCccccc
Q 018151 185 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT--QKSDPSCPICLR 246 (360)
Q Consensus 185 ~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~--~~~dpsCPlCrk 246 (360)
.|.||.+... +...+.=-.|+-.||..|+.--.... ......||.|+.
T Consensus 1 ~C~vC~~~~~--------------~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDD--------------DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCT--------------TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCC--------------CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4889988322 12223334799999999997765422 112578999864
No 105
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.55 E-value=5.3 Score=41.46 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=37.3
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
..+..|+||...=. .+..-||+|-=-..||.|-+...+ .|-.|+..+.
T Consensus 420 sEd~lCpICyA~pi-----------------~Avf~PC~H~SC~~CI~qHlmN~k----~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI-----------------NAVFAPCSHRSCYGCITQHLMNCK----RCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccc-----------------hhhccCCCCchHHHHHHHHHhcCC----eeeEecceee
Confidence 56788999964311 133459999999999999987764 7999999886
No 106
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.81 E-value=4.3 Score=45.27 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCcc--cccCcc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPI--CLRLQE 249 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPl--Crk~~~ 249 (360)
.|||.-|.+||.+|+.+.. .||. |-..-.
T Consensus 798 ~C~H~gH~sh~~sw~~~~s----~ca~~~C~~~c~ 828 (839)
T KOG0269|consen 798 VCGHGGHDSHLKSWFFKAS----PCAKSICPHLCH 828 (839)
T ss_pred cccccccHHHHHHHHhcCC----CCccccCCcccc
Confidence 5999999999999998864 5765 655544
No 107
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=61.18 E-value=7 Score=40.11 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=39.3
Q ss_pred CCccccccchhhh--ccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC-----CCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLS--QRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-----QKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Ls--q~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~-----~~~dpsCPlCrk~~~~ 250 (360)
....|++|+..=. +-+.-++.-..-....+.-+.-||||+--..=..-|-.-. ...++.||.|...+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3567999975421 1111111111111122334556999998888777774321 2246899999999875
No 108
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=60.87 E-value=8.4 Score=43.67 Aligned_cols=53 Identities=25% Similarity=0.460 Sum_probs=35.4
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCC---ChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR---HVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCG---HVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
|...|-||...=.. |.+.-.--.|. -..|.+||-+|+.... +-.|-+|...++
T Consensus 11 d~~~CRICr~e~~~-------------d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~--~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIR-------------DDPLFHPCKCSGSIKYIHRECLMEWMECSG--TKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCC-------------CCcCcccccccchhHHHHHHHHHHHHhcCC--Ccceeeecceee
Confidence 55789999765332 22222211232 2489999999998654 468999998886
No 109
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=60.16 E-value=2.9 Score=43.46 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=0.0
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCC--CCCCCcccccCcc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK--SDPSCPICLRLQE 249 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~--~dpsCPlCrk~~~ 249 (360)
...|+|=+..|.- |--..+.+ ..+..+-.-|.||||+..+ .|..+.+. ..-.||+|+..=.
T Consensus 277 rpQCPVglnTL~f--p~~~~~~~-~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 277 RPQCPVGLNTLVF--PSKSRKDV-PDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCCCcCCCcccc--cccccccc-ccccCceeeccccceeeec---ccccccccccccccCCCccccCC
Confidence 3457777766642 11111111 1233345568999997654 67654332 2468999997643
No 110
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.02 E-value=3.3 Score=39.05 Aligned_cols=29 Identities=38% Similarity=0.723 Sum_probs=20.9
Q ss_pred cEeeCCCChhh-HHHHHhhcccCCCCCCCCcccccCcc
Q 018151 213 VGVLSCRHVFH-AECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 213 VaVLPCGHVFH-aeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
|.+|||.|.-| ..|-+. + ..||+|+....
T Consensus 171 VlllPCrHl~lC~~C~~~-~-------~~CPiC~~~~~ 200 (207)
T KOG1100|consen 171 VLLLPCRHLCLCGICDES-L-------RICPICRSPKT 200 (207)
T ss_pred EEeecccceEeccccccc-C-------ccCCCCcChhh
Confidence 77899999744 455544 2 36999998765
No 111
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=57.66 E-value=6.5 Score=40.25 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=26.5
Q ss_pred CcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccC
Q 018151 212 VVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 247 (360)
Q Consensus 212 vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~ 247 (360)
+...|.||||.-.+-|.+.-..+- ....||.|--.
T Consensus 351 pP~ml~CgHVIskeal~~LS~nG~-~~FKCPYCP~~ 385 (396)
T COG5109 351 PPVMLECGHVISKEALSVLSQNGV-LSFKCPYCPEM 385 (396)
T ss_pred CCeeeeccceeeHHHHHHHhhcCc-EEeeCCCCCcc
Confidence 455899999999999998755443 35689999543
No 112
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=57.09 E-value=3.5 Score=42.87 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred CccccccchhhhccCCCccccc---ccCCCCCCcEeeCCCChhhHHHHHhhcccC-----CCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRI---VRSGDMPVVGVLSCRHVFHAECLEQTTPKT-----QKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i---~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~-----~~~dpsCPlCrk~~~~ 250 (360)
..+|+||+..=.. -|...... ......+.-+--||||+--+....-|-.-. +..++.||.|...+..
T Consensus 328 ~r~CPlCr~~g~~-V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPY-VPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCc-eeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 5789999865221 12111111 111122344556999999999998885321 1224789999999975
No 113
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=55.36 E-value=8.9 Score=39.24 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=25.2
Q ss_pred CCCChhhHHHHHhhcccCCC---------CCCCCcccccCcc
Q 018151 217 SCRHVFHAECLEQTTPKTQK---------SDPSCPICLRLQE 249 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~---------~dpsCPlCrk~~~ 249 (360)
-|....-.+||-+|+...+. ..-+||+||+.+-
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 46666789999999976652 1357999999875
No 114
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=50.24 E-value=6.5 Score=46.12 Aligned_cols=47 Identities=28% Similarity=0.608 Sum_probs=38.4
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
...|.||++-+.. .-++.-|||.|-..|++.|+... ..||+|+...+
T Consensus 1153 ~~~c~ic~dil~~----------------~~~I~~cgh~~c~~c~~~~l~~~----s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRN----------------QGGIAGCGHEPCCRCDELWLYAS----SRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHHHh----------------cCCeeeechhHhhhHHHHHHHHh----ccCcchhhhhh
Confidence 3489999999972 13467899999999999999775 48999997665
No 115
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=49.04 E-value=5.4 Score=27.13 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=8.1
Q ss_pred CCCCcccccCc
Q 018151 238 DPSCPICLRLQ 248 (360)
Q Consensus 238 dpsCPlCrk~~ 248 (360)
+..||+|...-
T Consensus 17 ~~~CP~Cg~~~ 27 (33)
T cd00350 17 PWVCPVCGAPK 27 (33)
T ss_pred CCcCcCCCCcH
Confidence 35899998754
No 116
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=48.88 E-value=8.6 Score=28.53 Aligned_cols=33 Identities=33% Similarity=0.672 Sum_probs=12.7
Q ss_pred CcEeeCCCChhhHHH--HHhhcccCC-CCCCCCcccccC
Q 018151 212 VVGVLSCRHVFHAEC--LEQTTPKTQ-KSDPSCPICLRL 247 (360)
Q Consensus 212 vVaVLPCGHVFHaeC--LEqWl~k~~-~~dpsCPlCrk~ 247 (360)
+++-..|.|+ +| |+.|+.... .....||+|.+.
T Consensus 15 P~Rg~~C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 15 PVRGKNCKHL---QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp EEEETT--SS-----EEHHHHHHHHHHS---B-TTT---
T ss_pred CccCCcCccc---ceECHHHHHHHhhccCCeECcCCcCc
Confidence 4667789987 34 334443221 123689999863
No 117
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.66 E-value=9.3 Score=39.01 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=37.1
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCC--CCCCCCc--ccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ--KSDPSCP--ICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~--~~dpsCP--lCrk~~~ 249 (360)
.....|.||...+.. .+...- ++.|+|-|-.+|+.+.+.... ...+.|| -|...+.
T Consensus 144 ~~~~~C~iC~~e~~~------------~~~~f~-~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 144 LPKEECGICFVEDPE------------AEDMFS-VLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccccCccCcccccc------------HhhhHH-HhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 356889999944331 122223 789999999999999887442 2346776 4655554
No 118
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=47.30 E-value=18 Score=32.84 Aligned_cols=55 Identities=16% Similarity=0.523 Sum_probs=37.9
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|-||.+.-.+ .+.+.+++ =||=..--.|--+...... ..|.||+|+..+..
T Consensus 79 ~lYeCnIC~etS~e------e~FLKPne-------CCgY~iCn~Cya~LWK~~~-~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAE------ERFLKPNE-------CCGYSICNACYANLWKFCN-LYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccch------hhcCCccc-------ccchHHHHHHHHHHHHHcc-cCCCCCcccccccc
Confidence 55789999988653 34455544 3887777777666444333 35899999999874
No 119
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=45.67 E-value=19 Score=26.48 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=9.4
Q ss_pred Cccccccchhhh
Q 018151 183 TFKCGLCERFLS 194 (360)
Q Consensus 183 ~~~C~ICle~Ls 194 (360)
...|+.|.+.|+
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 467999999765
No 120
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=45.43 E-value=15 Score=38.05 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=34.0
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+-|++|.+++.-. | ....--+||--...-|....-..- +-.||-||+.|.+
T Consensus 15 d~cplcie~mdit------------d-knf~pc~cgy~ic~fc~~~irq~l---ngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDIT------------D-KNFFPCPCGYQICQFCYNNIRQNL---NGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccc------------c-CCcccCCcccHHHHHHHHHHHhhc---cCCChHhhhhccc
Confidence 4499999988621 1 112234788887788876654332 2589999999974
No 121
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=45.09 E-value=8.9 Score=34.94 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=24.0
Q ss_pred hhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 222 FHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 222 FHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
||..||+.=|......+..||.|...-..
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 89999999887766667899999987654
No 122
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.70 E-value=15 Score=37.52 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=25.6
Q ss_pred CCCChhhHHHHHhhcccCCC---------CCCCCcccccCcc
Q 018151 217 SCRHVFHAECLEQTTPKTQK---------SDPSCPICLRLQE 249 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~---------~dpsCPlCrk~~~ 249 (360)
-|....-.+||-+|+...+. ..-+||+||+.+.
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 36777889999999876542 2368999999885
No 123
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=44.21 E-value=15 Score=37.61 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=38.4
Q ss_pred CCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 179 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 179 ~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.+.+...|+||++.-.+ +.++-.-|=||.-.|+-+.+.+- ..||+=..+..
T Consensus 296 l~~~~~~CpvClk~r~N----------------ptvl~vSGyVfCY~Ci~~Yv~~~----~~CPVT~~p~~ 346 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQN----------------PTVLEVSGYVFCYPCIFSYVVNY----GHCPVTGYPAS 346 (357)
T ss_pred CCCccccChhHHhccCC----------------CceEEecceEEeHHHHHHHHHhc----CCCCccCCcch
Confidence 34677889999988541 24455679999999999999854 48998666554
No 124
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=41.76 E-value=17 Score=36.31 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=31.8
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCCCCcEeeCC--CChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSC--RHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPC--GHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
..+...|+||.+.|.- + ++.| ||..-..|-.+-. ..||.|+..++
T Consensus 45 ~~~lleCPvC~~~l~~----------------P--i~QC~nGHlaCssC~~~~~-------~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSP----------------P--IFQCDNGHLACSSCRTKVS-------NKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcc----------------c--ceecCCCcEehhhhhhhhc-------ccCCccccccc
Confidence 3567889999999971 2 3344 6666666654332 36999999998
No 125
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=41.36 E-value=27 Score=29.12 Aligned_cols=59 Identities=17% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 179 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 179 ~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.....+.|-||.+.+--. ..++ .=||.--|+--.-..|.+-=..... ..||-|+..|..
T Consensus 5 k~~~~qiCqiCGD~VGl~---------~~Ge-~FVAC~eC~fPvCr~CyEYErkeg~---q~CpqCkt~ykr 63 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGLT---------ENGE-VFVACHECAFPVCRPCYEYERKEGN---QVCPQCKTRYKR 63 (80)
T ss_dssp S--SS-B-SSS--B--B----------SSSS-B--S-SSS-----HHHHHHHHHTS----SB-TTT--B---
T ss_pred hhcCCcccccccCccccC---------CCCC-EEEEEcccCCccchhHHHHHhhcCc---ccccccCCCccc
Confidence 345778999999998631 1223 1244456777777888886665553 589999998875
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.76 E-value=20 Score=36.57 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=35.4
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..|+||.+++... |. ..--.+|||..+.+|+...... +-.||.|++++..
T Consensus 250 ~s~p~~~~~~~~~------------d~-~~lP~~~~~~~~l~~~~t~~~~----~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLT------------DS-NFLPCPCGFRLCLFCHKTISDG----DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccc------------cc-ccccccccccchhhhhhccccc----CCCCCccCCcccc
Confidence 5699999988521 21 1222379999888888876544 3689999988864
No 127
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=40.62 E-value=18 Score=35.15 Aligned_cols=50 Identities=24% Similarity=0.544 Sum_probs=38.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....+|-+|.+.+-+ .+.--.|+=-||.-|+...+.+. +.||-|.--|..
T Consensus 179 dnlk~Cn~Ch~LvIq----------------g~rCg~c~i~~h~~c~qty~q~~----~~cphc~d~w~h 228 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQ----------------GIRCGSCNIQYHRGCIQTYLQRR----DICPHCGDLWTH 228 (235)
T ss_pred HHHHHHhHhHHHhhe----------------eeccCcccchhhhHHHHHHhccc----CcCCchhcccCc
Confidence 345689999988753 24445788889999999999873 689999877764
No 128
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.40 E-value=7.9 Score=28.63 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=12.2
Q ss_pred HHHhhcccCCCCCCCCcccccCccc
Q 018151 226 CLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 226 CLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
-+++.+..-...+..||+|.+.+.+
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDE 32 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-H
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCH
Confidence 3455554433334589999999985
No 129
>PLN02189 cellulose synthase
Probab=36.96 E-value=29 Score=40.22 Aligned_cols=60 Identities=20% Similarity=0.378 Sum_probs=40.8
Q ss_pred CCCCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 177 SYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 177 ~~~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
+......+.|.||.+++... ..|+ .=|+.-.|+--.-..|.|-=..+. +..||-|+..|.
T Consensus 28 ~~~~~~~~~C~iCgd~vg~~---------~~g~-~fvaC~~C~fpvCr~Cyeyer~eg---~q~CpqCkt~Y~ 87 (1040)
T PLN02189 28 PLRNLDGQVCEICGDEIGLT---------VDGD-LFVACNECGFPVCRPCYEYERREG---TQNCPQCKTRYK 87 (1040)
T ss_pred CcccccCccccccccccCcC---------CCCC-EEEeeccCCCccccchhhhhhhcC---CccCcccCCchh
Confidence 34445678999999998631 1222 234455688878889995444443 368999999997
No 130
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=36.81 E-value=23 Score=37.89 Aligned_cols=36 Identities=25% Similarity=0.621 Sum_probs=28.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT 234 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~ 234 (360)
.+..|+||...|.+ ..+|+|+|-.-..|....+-..
T Consensus 3 eelkc~vc~~f~~e-----------------piil~c~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE-----------------PIILPCSHNLCQACARNILVQT 38 (699)
T ss_pred ccccCceehhhccC-----------------ceEeecccHHHHHHHHhhcccC
Confidence 35679999999873 3489999999999998776543
No 131
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=34.86 E-value=20 Score=35.55 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=33.8
Q ss_pred chhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccC
Q 018151 190 ERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 247 (360)
Q Consensus 190 le~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~ 247 (360)
++.|..++||.-..|+.+ +..-.|||||-.+=+.+.+.... ...||+=...
T Consensus 172 ~e~fs~rdPis~~~I~nP-----viSkkC~HvydrDsI~~~l~~~~--~i~CPv~gC~ 222 (262)
T KOG2979|consen 172 QEVFSNRDPISKKPIVNP-----VISKKCGHVYDRDSIMQILCDEI--TIRCPVLGCE 222 (262)
T ss_pred hhhhcccCchhhhhhhch-----hhhcCcCcchhhhhHHHHhccCc--eeecccccCC
Confidence 345566677664444333 44568999999999999987632 3578873333
No 132
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=33.14 E-value=30 Score=35.69 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=34.4
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCC--CCCCCcccccCc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK--SDPSCPICLRLQ 248 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~--~dpsCPlCrk~~ 248 (360)
..|++=+..|.-.++ .+-.......+-.-|.||||-.-+ .|-.+.+. +.-.||+|+..=
T Consensus 291 PQCPVglnTL~~P~~---~~~~~~~~~QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 291 PQCPVGLNTLAFPSK---RRKRVVDEKQPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred CCCCcccceeecccc---cccccccccCCeEEEecccccccc---ccccccccCcccCcCCeeeeec
Confidence 457777777753211 122233344567789999993322 57654432 246799998643
No 133
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=31.13 E-value=9.3 Score=38.78 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=15.6
Q ss_pred eCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 216 LSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 216 LPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
-.=-||||.+|. .|-||++.+.
T Consensus 110 kAqd~VYHl~CF------------~C~iC~R~L~ 131 (383)
T KOG4577|consen 110 KAQDFVYHLHCF------------ACFICKRQLA 131 (383)
T ss_pred Hhhcceeehhhh------------hhHhhhcccc
Confidence 346799999996 4666666654
No 134
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.26 E-value=16 Score=41.45 Aligned_cols=52 Identities=27% Similarity=0.561 Sum_probs=35.4
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEee--CCCCh-hhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL--PCGHV-FHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
....|.||...-- ..|-+| .|--+ ||..||+.=+.+.......|+-|.-.-.
T Consensus 214 E~~~C~IC~~~Dp----------------EdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~~ 268 (1134)
T KOG0825|consen 214 EEVKCDICTVHDP----------------EDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLEI 268 (1134)
T ss_pred ccccceeeccCCh----------------HHhheeecccccceeeccccCcccccccccceecCcchhhhh
Confidence 4567999976522 123233 58888 9999999966554444478999986654
No 135
>PLN02436 cellulose synthase A
Probab=29.08 E-value=47 Score=38.73 Aligned_cols=60 Identities=18% Similarity=0.375 Sum_probs=40.4
Q ss_pred CCCCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 177 SYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 177 ~~~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
+......+.|-||.+++... ..|+. =||--.|+--.-..|.|-=..+. +..||-|+..|.
T Consensus 30 ~~~~~~~~iCqICGD~Vg~t---------~dGe~-FVACn~C~fpvCr~Cyeyer~eg---~~~Cpqckt~Y~ 89 (1094)
T PLN02436 30 SVQELSGQTCQICGDEIELT---------VDGEP-FVACNECAFPVCRPCYEYERREG---NQACPQCKTRYK 89 (1094)
T ss_pred CccccCCccccccccccCcC---------CCCCE-EEeeccCCCccccchhhhhhhcC---CccCcccCCchh
Confidence 34456778999999998631 12231 24444577778889995444443 368999999997
No 136
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=28.85 E-value=50 Score=38.48 Aligned_cols=61 Identities=20% Similarity=0.433 Sum_probs=40.6
Q ss_pred CCCCCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 176 QSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 176 ~~~~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.+......+.|-||.+++... ..|+ .=||--.||----..|.|==-.+. +..||-|+..|.
T Consensus 10 k~~~~~~~qiCqICGD~vg~~---------~~Ge-~FVAC~eC~FPVCrpCYEYEr~eG---~q~CPqCktrYk 70 (1079)
T PLN02638 10 KPMKHGGGQVCQICGDNVGKT---------VDGE-PFVACDVCAFPVCRPCYEYERKDG---NQSCPQCKTKYK 70 (1079)
T ss_pred CCccccCCceeeecccccCcC---------CCCC-EEEEeccCCCccccchhhhhhhcC---CccCCccCCchh
Confidence 344456778999999998631 2233 224555677778888985333333 368999999997
No 137
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.68 E-value=50 Score=38.36 Aligned_cols=57 Identities=21% Similarity=0.515 Sum_probs=39.3
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
...+.|-||.+++... ..|+ .=||--.|+--.-..|.|-=..+. +..||-|+..|..
T Consensus 13 ~~~~~c~iCGd~vg~~---------~~Ge-~FVAC~eC~fpvCr~cyeye~~~g---~~~cp~c~t~y~~ 69 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVK---------EDGQ-PFVACHVCGFPVCKPCYEYERSEG---NQCCPQCNTRYKR 69 (1044)
T ss_pred CCcchhhccccccCcC---------CCCC-EEEEeccCCCccccchhhhhhhcC---CccCCccCCchhh
Confidence 4778999999998631 2233 235555677778889995433333 3689999999973
No 138
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.64 E-value=12 Score=35.63 Aligned_cols=52 Identities=27% Similarity=0.490 Sum_probs=39.5
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeC--------CCChhhHHHHHhhcccCCCCCCCCcccccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS--------CRHVFHAECLEQTTPKTQKSDPSCPICLRL 247 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLP--------CGHVFHaeCLEqWl~k~~~~dpsCPlCrk~ 247 (360)
....|.||...+.. +....+..++. |||..-..|++.-+.... ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~-----------n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~---~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSE-----------NDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG---IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhc-----------cccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh---hcCCcccce
Confidence 33669999999872 11233455677 999999999999987654 689999975
No 139
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=27.65 E-value=22 Score=36.22 Aligned_cols=104 Identities=19% Similarity=0.339 Sum_probs=61.6
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhccc---CC------CCCCCCcccccCcccCC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK---TQ------KSDPSCPICLRLQEENS 252 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k---~~------~~dpsCPlCrk~~~~~~ 252 (360)
....|.||.+--+. +++..-...+.--+|--.+|..||+--..- .+ ..=-.|-||.++..+
T Consensus 257 ~~~~~~~~~~~~~~--------~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E-- 326 (381)
T KOG1512|consen 257 RRNERKHFWDIQTN--------IIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIE-- 326 (381)
T ss_pred chhhhhhhhcchhh--------hhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccc--
Confidence 44679999877441 333333345666789999999999743211 00 001256677766654
Q ss_pred CCcchhhhhcccCCccccccCCCC-----------CCCCCCCCCCCcccccccCCCCchhhhhhhhh
Q 018151 253 PDQQVFSRLKNSFPRLRQSCDNGQ-----------SRPWGCPQAGGCVEGASHVPPRNTVLLLNRNR 308 (360)
Q Consensus 253 ~~q~~~~~~rn~~P~l~~~~d~G~-----------sr~wg~a~~gd~v~~a~~~p~~~~~~~l~r~r 308 (360)
++-+|+. ..|+|. ..-|=|. -.|-+.+..-|++.+|..++..|
T Consensus 327 -~E~~FCD----------~CDRG~HT~CVGL~~lP~G~WICD--~~C~~~~~~t~R~~s~a~~~~gr 380 (381)
T KOG1512|consen 327 -SEHLFCD----------VCDRGPHTLCVGLQDLPRGEWICD--MRCREATLNTTRQSSMAQIKQGR 380 (381)
T ss_pred -hheeccc----------cccCCCCccccccccccCccchhh--hHHHHhcCCCChhhhHHhhccCC
Confidence 4555653 344443 3335444 23777788888888877666543
No 140
>PF15616 TerY-C: TerY-C metal binding domain
Probab=27.56 E-value=19 Score=32.21 Aligned_cols=41 Identities=22% Similarity=0.602 Sum_probs=30.2
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
....||-|...+. .++-.||++| |++. +. ..+||-|.+...
T Consensus 76 g~PgCP~CGn~~~------------------fa~C~CGkl~---Ci~g--~~----~~~CPwCg~~g~ 116 (131)
T PF15616_consen 76 GAPGCPHCGNQYA------------------FAVCGCGKLF---CIDG--EG----EVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCCCcChhc------------------EEEecCCCEE---EeCC--CC----CEECCCCCCeee
Confidence 4477999998865 5677899886 6655 11 358999998875
No 141
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=36 Score=36.02 Aligned_cols=45 Identities=27% Similarity=0.590 Sum_probs=34.0
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.....|.||..... .++-+|- |.-||..|+..+ ..||+|.+....
T Consensus 477 ~~~~~~~~~~~~~~------------------~~~~~~~---~~~~l~~~~~~~----~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEMS------------------ARITPCS---HALCLRKWLYVQ----EVCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHHH------------------hcccccc---chhHHHhhhhhc----cccCCCchhhhc
Confidence 45577999987761 2233555 999999999876 489999988875
No 142
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=25.30 E-value=37 Score=27.05 Aligned_cols=23 Identities=26% Similarity=0.214 Sum_probs=16.5
Q ss_pred CCCCcEeeCCCChhhHHHHHhhc
Q 018151 209 DMPVVGVLSCRHVFHAECLEQTT 231 (360)
Q Consensus 209 D~~vVaVLPCGHVFHaeCLEqWl 231 (360)
+..-||.|.|||.=|..=--.|+
T Consensus 8 e~hWVA~L~CGH~QHvRH~PPw~ 30 (61)
T PF12088_consen 8 EGHWVAELSCGHTQHVRHDPPWQ 30 (61)
T ss_pred cCCEEEEecccccccccCCCCCc
Confidence 44569999999998875444443
No 143
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=24.83 E-value=34 Score=25.30 Aligned_cols=23 Identities=30% Similarity=0.855 Sum_probs=14.0
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCccc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPIC 244 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlC 244 (360)
.|||.|.+. +...+.. ...||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~----~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRR----GKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccC----CCCCCCC
Confidence 577777666 4444422 2479988
No 144
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=24.58 E-value=26 Score=26.91 Aligned_cols=32 Identities=25% Similarity=0.697 Sum_probs=21.5
Q ss_pred eeCCC-ChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 215 VLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 215 VLPCG-HVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+..|. |..-..||..++...+ .||||..++..
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~----~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSD----RCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSS----EETTTTEE---
T ss_pred eeeecchhHHHHHHHHHhcccc----CCCcccCcCcc
Confidence 45665 7778999999998864 89999987753
No 145
>PRK11827 hypothetical protein; Provisional
Probab=24.38 E-value=28 Score=27.38 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=20.9
Q ss_pred CCCcccccCcccCC-------CCcchhhhhcccCCccccc
Q 018151 239 PSCPICLRLQEENS-------PDQQVFSRLKNSFPRLRQS 271 (360)
Q Consensus 239 psCPlCrk~~~~~~-------~~q~~~~~~rn~~P~l~~~ 271 (360)
..||+|+..+.-.. ..-.+.+-+|+.+|.|-..
T Consensus 9 LaCP~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPVlL~d 48 (60)
T PRK11827 9 IACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLET 48 (60)
T ss_pred eECCCCCCcCeEcCCCCeEECCccCeeccccCCccccCHH
Confidence 47999998876322 2334555667777776543
No 146
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.96 E-value=65 Score=33.22 Aligned_cols=54 Identities=24% Similarity=0.479 Sum_probs=37.8
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCC----CCCc--ccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSD----PSCP--ICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~d----psCP--lCrk~~~~ 250 (360)
.....|+||.+.+.. .+..+.|||.|-..|....+.+.-..+ ..|| -|...+++
T Consensus 68 ~~~~~c~ic~~~~~~----------------~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~ 127 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG----------------EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGE 127 (444)
T ss_pred CccccCCcccCCCcc----------------hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCC
Confidence 455889999988751 356789999999999999876543222 2344 56666653
No 147
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=22.88 E-value=29 Score=31.64 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=24.8
Q ss_pred CCCChhhHHHHHhhcccCCC-------CCCCCcccccCcccCCCCcchhh
Q 018151 217 SCRHVFHAECLEQTTPKTQK-------SDPSCPICLRLQEENSPDQQVFS 259 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~-------~dpsCPlCrk~~~~~~~~q~~~~ 259 (360)
.|||.| |.||..... .-.+||+|...-..+..--|.+.
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~v~ 53 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPAVA 53 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCeec
Confidence 356766 778875421 23689999998887655544443
No 148
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.76 E-value=52 Score=38.51 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=30.4
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTT 231 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl 231 (360)
+....|-||.+.+.. +.++.--|.|||+-|.+|.....
T Consensus 1131 iht~~c~~c~q~~~~-------------h~~~~~Fl~wgh~qh~qc~~~~d 1168 (1206)
T KOG2079|consen 1131 IHTDDCEICGQKIWA-------------HLDPLLFLAWGHVQHHQCMISVD 1168 (1206)
T ss_pred ecCcchHhhhhhhhc-------------cCcchheeeccchhhHHHHHHHh
Confidence 677899999998852 33445567899999999999886
No 149
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=22.44 E-value=35 Score=30.69 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=12.1
Q ss_pred CCCccccccchhhhc
Q 018151 181 SDTFKCGLCERFLSQ 195 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq 195 (360)
+...+|+.|.-+|.+
T Consensus 26 ML~~hCp~Cg~PLF~ 40 (131)
T COG1645 26 MLAKHCPKCGTPLFR 40 (131)
T ss_pred HHHhhCcccCCccee
Confidence 566789999999884
No 150
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=21.47 E-value=15 Score=38.91 Aligned_cols=40 Identities=25% Similarity=0.573 Sum_probs=0.0
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeC-CCChhhHHHHHhhcccCCCCCCCCcccccCcccCCC
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 253 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLP-CGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~~~ 253 (360)
+.|..|.+.+.++ +|. ||-+||..| .+|-+|.+-++...+
T Consensus 335 ekC~~Cg~~I~d~------------------iLrA~GkayHp~C------------F~Cv~C~r~ldgipF 375 (468)
T KOG1701|consen 335 EKCNKCGEPIMDR------------------ILRALGKAYHPGC------------FTCVVCARCLDGIPF 375 (468)
T ss_pred HHHhhhhhHHHHH------------------HHHhcccccCCCc------------eEEEEeccccCCccc
No 151
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=21.41 E-value=37 Score=37.76 Aligned_cols=52 Identities=21% Similarity=0.595 Sum_probs=39.1
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
....|+||...+..+ ..+.|=|.|-..|+..-+...+ ..-.||||+..+..+
T Consensus 20 k~lEc~ic~~~~~~p-----------------~~~kc~~~~l~~~~n~~f~~~~-~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 20 KILECPICLEHVKEP-----------------SLLKCDHIFLKFCLNKLFESKK-GPKQCALCKSDIEKR 71 (684)
T ss_pred hhccCCceeEEeecc-----------------chhhhhHHHHhhhhhceeeccC-ccccchhhhhhhhhh
Confidence 346799999998731 4679999999999988765432 135799999888644
No 152
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.06 E-value=50 Score=26.06 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=11.2
Q ss_pred CCCCcccccCccc
Q 018151 238 DPSCPICLRLQEE 250 (360)
Q Consensus 238 dpsCPlCrk~~~~ 250 (360)
.|.||+|......
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 4899999999874
No 153
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.41 E-value=44 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=14.8
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCccccc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLR 246 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk 246 (360)
.|||.|-.. .+-.......||.|..
T Consensus 10 ~Cg~~fe~~-----~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVL-----QSISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEE-----EEcCCCCCCcCCCCCC
Confidence 577777543 1211122368999998
No 154
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=20.39 E-value=22 Score=27.66 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=7.1
Q ss_pred CCCcccccCccc
Q 018151 239 PSCPICLRLQEE 250 (360)
Q Consensus 239 psCPlCrk~~~~ 250 (360)
++||+|...+..
T Consensus 25 atCP~C~a~~~~ 36 (54)
T PF09237_consen 25 ATCPICGAVIRQ 36 (54)
T ss_dssp EE-TTT--EESS
T ss_pred CCCCcchhhccc
Confidence 589999998863
Done!