Query 018151
Match_columns 360
No_of_seqs 138 out of 663
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 10:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v87_A Deltex protein 2; ring- 99.4 8.2E-14 2.8E-18 112.0 5.0 76 182-257 24-101 (114)
2 2ecl_A Ring-box protein 2; RNF 99.4 5.4E-13 1.8E-17 103.3 5.0 64 181-250 13-76 (81)
3 1x4j_A Ring finger protein 38; 99.3 4E-13 1.4E-17 101.2 2.9 52 181-250 21-72 (75)
4 3dpl_R Ring-box protein 1; ubi 99.3 5.4E-13 1.9E-17 109.8 3.4 65 181-249 35-100 (106)
5 2ep4_A Ring finger protein 24; 99.3 1.8E-12 6.2E-17 96.9 4.0 51 182-250 14-64 (74)
6 1iym_A EL5; ring-H2 finger, ub 99.3 1.1E-12 3.7E-17 92.8 2.6 50 182-249 4-54 (55)
7 2kiz_A E3 ubiquitin-protein li 99.3 1.4E-12 4.9E-17 96.3 3.3 51 182-250 13-63 (69)
8 2ecm_A Ring finger and CHY zin 99.3 1.3E-12 4.6E-17 92.1 2.4 52 181-249 3-54 (55)
9 2ect_A Ring finger protein 126 99.3 2.3E-12 7.9E-17 97.2 3.3 51 182-250 14-64 (78)
10 2l0b_A E3 ubiquitin-protein li 99.2 1.7E-12 6E-17 102.0 2.4 51 181-249 38-88 (91)
11 2ea6_A Ring finger protein 4; 99.2 9.2E-12 3.2E-16 90.8 4.6 56 181-250 13-68 (69)
12 4a0k_B E3 ubiquitin-protein li 99.2 2E-12 6.8E-17 108.9 0.4 64 182-249 47-111 (117)
13 3ng2_A RNF4, snurf, ring finge 99.2 7.8E-12 2.7E-16 92.1 3.0 56 181-250 8-63 (71)
14 2d8t_A Dactylidin, ring finger 99.2 8.1E-12 2.8E-16 93.3 2.8 49 181-250 13-61 (71)
15 2ct2_A Tripartite motif protei 99.2 4.5E-11 1.6E-15 91.1 6.4 56 181-250 13-68 (88)
16 2xeu_A Ring finger protein 4; 99.1 1.2E-11 4E-16 89.0 2.3 55 182-250 2-56 (64)
17 1g25_A CDK-activating kinase a 99.1 3E-11 1E-15 88.6 4.1 56 181-252 1-57 (65)
18 2ecn_A Ring finger protein 141 99.1 4.7E-11 1.6E-15 88.3 3.2 48 181-250 13-60 (70)
19 1chc_A Equine herpes virus-1 r 99.1 2.6E-11 9E-16 89.0 1.5 49 182-250 4-52 (68)
20 2ysl_A Tripartite motif-contai 99.1 1.5E-10 5.1E-15 85.8 5.5 51 182-250 19-69 (73)
21 2djb_A Polycomb group ring fin 99.1 5E-11 1.7E-15 89.2 2.6 50 182-251 14-63 (72)
22 2d8s_A Cellular modulator of i 99.0 7.9E-11 2.7E-15 92.6 3.0 54 180-250 12-70 (80)
23 2ecy_A TNF receptor-associated 99.0 7.8E-11 2.7E-15 86.6 2.7 50 181-250 13-62 (66)
24 2csy_A Zinc finger protein 183 99.0 2.9E-10 1E-14 86.6 3.9 47 182-249 14-60 (81)
25 4ayc_A E3 ubiquitin-protein li 99.0 1.9E-10 6.5E-15 96.3 2.8 47 183-250 53-99 (138)
26 2ysj_A Tripartite motif-contai 98.9 6.4E-10 2.2E-14 80.8 4.8 46 181-244 18-63 (63)
27 2yur_A Retinoblastoma-binding 98.9 2.9E-10 1E-14 85.8 3.1 49 182-249 14-63 (74)
28 1t1h_A Gspef-atpub14, armadill 98.9 2.9E-10 1E-14 85.6 2.7 50 181-250 6-55 (78)
29 2egp_A Tripartite motif-contai 98.9 2.4E-10 8.2E-15 85.7 2.2 52 182-250 11-65 (79)
30 4ap4_A E3 ubiquitin ligase RNF 98.9 2.8E-10 9.6E-15 91.6 2.7 56 181-250 5-60 (133)
31 3fl2_A E3 ubiquitin-protein li 98.9 4.2E-10 1.4E-14 92.2 3.3 49 182-250 51-99 (124)
32 2ecw_A Tripartite motif-contai 98.9 4.9E-10 1.7E-14 84.2 3.1 52 182-250 18-71 (85)
33 2ecj_A Tripartite motif-contai 98.9 4.7E-10 1.6E-14 79.5 2.7 45 182-244 14-58 (58)
34 2ct0_A Non-SMC element 1 homol 98.9 1.4E-09 4.9E-14 85.1 5.3 58 178-253 10-67 (74)
35 3lrq_A E3 ubiquitin-protein li 98.9 3.3E-10 1.1E-14 90.4 1.6 50 182-250 21-70 (100)
36 2ckl_B Ubiquitin ligase protei 98.9 6E-10 2.1E-14 95.3 2.1 50 182-250 53-102 (165)
37 2ecv_A Tripartite motif-contai 98.9 5.1E-10 1.8E-14 84.0 1.5 52 182-250 18-71 (85)
38 4ap4_A E3 ubiquitin ligase RNF 98.8 7.2E-10 2.5E-14 89.2 2.2 56 181-250 70-125 (133)
39 2ckl_A Polycomb group ring fin 98.8 7.3E-10 2.5E-14 88.7 2.2 49 182-250 14-62 (108)
40 2y43_A E3 ubiquitin-protein li 98.8 7E-10 2.4E-14 87.4 2.0 49 182-250 21-69 (99)
41 3ztg_A E3 ubiquitin-protein li 98.8 9.8E-10 3.4E-14 85.1 2.6 50 181-249 11-61 (92)
42 3l11_A E3 ubiquitin-protein li 98.8 9.2E-10 3.2E-14 88.8 1.9 48 182-249 14-61 (115)
43 1z6u_A NP95-like ring finger p 98.8 2E-09 6.9E-14 92.4 3.2 50 182-251 77-126 (150)
44 1jm7_A BRCA1, breast cancer ty 98.8 2.2E-09 7.4E-14 85.3 2.3 50 183-250 21-70 (112)
45 1rmd_A RAG1; V(D)J recombinati 98.7 5.1E-09 1.7E-13 84.6 2.6 50 182-251 22-71 (116)
46 3hct_A TNF receptor-associated 98.7 4.3E-09 1.5E-13 85.8 1.7 51 181-251 16-66 (118)
47 1e4u_A Transcriptional repress 98.7 9.7E-09 3.3E-13 80.0 3.0 52 181-250 9-62 (78)
48 1jm7_B BARD1, BRCA1-associated 98.5 1.2E-08 4.1E-13 83.0 -0.2 46 182-250 21-67 (117)
49 2y1n_A E3 ubiquitin-protein li 98.5 3.9E-08 1.3E-12 97.4 2.8 48 183-250 332-379 (389)
50 3knv_A TNF receptor-associated 98.5 2.6E-08 8.8E-13 84.9 0.8 48 182-249 30-77 (141)
51 1bor_A Transcription factor PM 98.4 1.8E-08 6.1E-13 72.8 -0.6 45 182-250 5-49 (56)
52 4ic3_A E3 ubiquitin-protein li 98.4 4.3E-08 1.5E-12 74.5 1.5 44 182-250 23-67 (74)
53 2kr4_A Ubiquitin conjugation f 98.4 1.1E-07 3.9E-12 74.3 2.4 49 181-250 12-60 (85)
54 2kre_A Ubiquitin conjugation f 98.4 1.4E-07 4.8E-12 76.3 2.8 49 181-250 27-75 (100)
55 2c2l_A CHIP, carboxy terminus 98.3 1.3E-07 4.4E-12 84.5 2.1 51 180-250 205-255 (281)
56 1wgm_A Ubiquitin conjugation f 98.3 2E-07 6.9E-12 75.2 3.0 49 181-250 20-69 (98)
57 2yu4_A E3 SUMO-protein ligase 98.3 2.7E-07 9.1E-12 73.2 2.6 50 181-247 5-59 (94)
58 3hcs_A TNF receptor-associated 98.3 2.2E-07 7.4E-12 79.6 1.8 51 181-251 16-66 (170)
59 2vje_A E3 ubiquitin-protein li 98.3 2.5E-07 8.4E-12 68.9 1.8 49 181-250 6-57 (64)
60 2ecg_A Baculoviral IAP repeat- 98.2 3.6E-07 1.2E-11 69.2 1.8 43 183-250 25-68 (75)
61 2vje_B MDM4 protein; proto-onc 98.2 3.7E-07 1.3E-11 67.7 1.4 49 181-250 5-56 (63)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.1 7.5E-07 2.6E-11 66.5 2.1 49 182-249 5-58 (60)
63 2ea5_A Cell growth regulator w 98.0 2.5E-06 8.6E-11 64.4 3.2 45 181-250 13-58 (68)
64 2f42_A STIP1 homology and U-bo 98.0 2.2E-06 7.7E-11 76.8 2.2 50 181-250 104-153 (179)
65 2yho_A E3 ubiquitin-protein li 97.9 2.6E-06 9E-11 65.9 1.3 43 183-250 18-61 (79)
66 1wim_A KIAA0161 protein; ring 97.9 2.9E-06 1E-10 66.5 1.2 52 182-247 4-61 (94)
67 3k1l_B Fancl; UBC, ring, RWD, 97.8 2.5E-06 8.7E-11 84.3 -0.4 58 182-250 307-373 (381)
68 3t6p_A Baculoviral IAP repeat- 97.8 3.8E-06 1.3E-10 81.5 0.7 44 182-250 294-338 (345)
69 3htk_C E3 SUMO-protein ligase 97.7 9.5E-06 3.3E-10 77.2 1.9 52 181-250 179-232 (267)
70 2bay_A PRE-mRNA splicing facto 97.6 1.7E-05 5.9E-10 59.1 1.5 47 183-250 3-50 (61)
71 3nw0_A Non-structural maintena 97.5 5.4E-05 1.8E-09 70.0 3.2 52 182-251 179-230 (238)
72 3vk6_A E3 ubiquitin-protein li 97.2 7.7E-05 2.6E-09 62.2 1.0 84 184-317 2-85 (101)
73 2lri_C Autoimmune regulator; Z 91.8 0.15 5.2E-06 38.7 3.9 51 181-248 10-60 (66)
74 2k16_A Transcription initiatio 89.0 0.15 5.2E-06 38.5 1.7 54 182-249 17-70 (75)
75 1f62_A Transcription factor WS 88.6 0.26 8.8E-06 34.7 2.5 31 217-247 20-50 (51)
76 1wil_A KIAA1045 protein; ring 87.2 0.72 2.5E-05 37.7 4.6 51 181-246 13-75 (89)
77 2yql_A PHD finger protein 21A; 85.9 0.12 4E-06 37.5 -0.6 49 181-246 7-55 (56)
78 2l5u_A Chromodomain-helicase-D 84.8 0.45 1.5E-05 35.2 2.2 49 182-247 10-58 (61)
79 1we9_A PHD finger family prote 83.5 0.15 5.3E-06 37.4 -0.8 56 182-250 5-61 (64)
80 2puy_A PHD finger protein 21A; 77.5 0.25 8.6E-06 36.1 -1.4 51 182-249 4-54 (60)
81 1xwh_A Autoimmune regulator; P 76.9 0.48 1.6E-05 35.4 -0.1 52 181-249 6-57 (66)
82 2ysm_A Myeloid/lymphoid or mix 76.7 0.69 2.4E-05 37.2 0.8 50 182-245 6-55 (111)
83 1weu_A Inhibitor of growth fam 75.6 2.9 9.9E-05 33.7 4.2 31 218-250 57-88 (91)
84 1mm2_A MI2-beta; PHD, zinc fin 75.5 0.66 2.3E-05 34.3 0.3 32 217-248 26-57 (61)
85 2e6r_A Jumonji/ARID domain-con 74.8 0.36 1.2E-05 38.5 -1.3 54 181-248 14-67 (92)
86 3o36_A Transcription intermedi 74.0 0.8 2.7E-05 39.8 0.6 33 217-249 21-53 (184)
87 2ysm_A Myeloid/lymphoid or mix 73.9 0.43 1.5E-05 38.4 -1.1 33 216-248 73-105 (111)
88 3u5n_A E3 ubiquitin-protein li 73.5 0.77 2.6E-05 40.8 0.3 33 217-249 24-56 (207)
89 3shb_A E3 ubiquitin-protein li 69.2 2 6.8E-05 33.5 1.8 30 217-246 46-76 (77)
90 2ro1_A Transcription intermedi 69.1 0.98 3.4E-05 40.0 -0.0 32 217-248 19-50 (189)
91 2yt5_A Metal-response element- 68.9 0.58 2E-05 34.4 -1.3 57 181-249 4-63 (66)
92 1fp0_A KAP-1 corepressor; PHD 67.6 1.7 5.6E-05 35.1 1.0 51 182-249 24-74 (88)
93 1wem_A Death associated transc 67.0 1.6 5.4E-05 33.1 0.8 53 183-250 16-73 (76)
94 1wev_A Riken cDNA 1110020M19; 65.9 0.71 2.4E-05 36.5 -1.4 34 217-250 38-75 (88)
95 2jun_A Midline-1; B-BOX, TRIM, 65.5 2.6 8.8E-05 32.6 1.7 35 183-231 3-38 (101)
96 3asl_A E3 ubiquitin-protein li 65.0 3.4 0.00012 31.3 2.3 31 217-247 38-69 (70)
97 2kwj_A Zinc finger protein DPF 64.9 0.53 1.8E-05 38.5 -2.4 34 217-250 78-111 (114)
98 3v43_A Histone acetyltransfera 64.4 1.5 5.3E-05 35.6 0.3 30 217-246 82-111 (112)
99 1wep_A PHF8; structural genomi 64.1 4.7 0.00016 30.8 2.9 52 184-249 13-65 (79)
100 2e6s_A E3 ubiquitin-protein li 64.0 1.3 4.4E-05 34.5 -0.3 30 217-246 46-76 (77)
101 1wew_A DNA-binding family prot 63.7 4.6 0.00016 30.9 2.8 34 217-250 37-75 (78)
102 3lqh_A Histone-lysine N-methyl 61.6 0.64 2.2E-05 41.6 -2.7 55 183-249 2-65 (183)
103 2lv9_A Histone-lysine N-methyl 58.3 2 6.7E-05 34.5 -0.1 30 217-247 47-76 (98)
104 2ri7_A Nucleosome-remodeling f 57.4 1.7 6E-05 37.1 -0.6 54 182-249 7-61 (174)
105 1weo_A Cellulose synthase, cat 57.3 13 0.00044 30.6 4.5 60 178-250 11-70 (93)
106 2ku3_A Bromodomain-containing 55.4 4.6 0.00016 30.8 1.5 52 181-247 14-66 (71)
107 2lbm_A Transcriptional regulat 55.4 6.7 0.00023 34.0 2.7 30 217-246 80-116 (142)
108 3ask_A E3 ubiquitin-protein li 53.1 7.3 0.00025 36.2 2.7 31 217-247 194-225 (226)
109 2l43_A N-teminal domain from h 52.0 3 0.0001 33.0 -0.1 54 182-250 24-78 (88)
110 1wen_A Inhibitor of growth fam 49.3 4.2 0.00014 31.0 0.4 30 218-249 37-67 (71)
111 1wee_A PHD finger family prote 48.5 2 7E-05 32.3 -1.5 54 182-249 15-68 (72)
112 3i2d_A E3 SUMO-protein ligase 47.8 9.2 0.00032 37.9 2.7 36 212-249 262-299 (371)
113 3v43_A Histone acetyltransfera 47.5 10 0.00035 30.7 2.5 55 182-245 4-62 (112)
114 3o70_A PHD finger protein 13; 45.9 3.7 0.00013 31.0 -0.4 51 181-247 17-67 (68)
115 4fo9_A E3 SUMO-protein ligase 45.3 10 0.00036 37.4 2.6 36 212-249 228-265 (360)
116 2kgg_A Histone demethylase jar 44.2 1.5 5.1E-05 31.3 -2.7 48 185-245 4-52 (52)
117 2ko5_A Ring finger protein Z; 42.3 6.1 0.00021 32.8 0.4 32 215-250 41-73 (99)
118 2vnf_A ING 4, P29ING4, inhibit 41.9 3.2 0.00011 30.5 -1.2 27 218-246 31-58 (60)
119 2xb1_A Pygopus homolog 2, B-ce 39.0 1.1 3.9E-05 36.4 -4.5 54 183-249 3-63 (105)
120 3c6w_A P28ING5, inhibitor of g 38.1 4.2 0.00014 29.9 -1.1 27 218-246 30-57 (59)
121 2k5c_A Uncharacterized protein 35.7 9.9 0.00034 31.1 0.6 27 239-265 52-81 (95)
122 2g6q_A Inhibitor of growth pro 35.2 5 0.00017 29.8 -1.1 28 218-247 32-60 (62)
123 2gmg_A Hypothetical protein PF 34.3 18 0.0006 30.2 1.9 26 216-250 71-96 (105)
124 3mjh_B Early endosome antigen 34.0 9.9 0.00034 25.8 0.3 12 239-250 6-17 (34)
125 4gne_A Histone-lysine N-methyl 33.8 12 0.00041 30.8 0.8 30 217-248 34-63 (107)
126 2cu8_A Cysteine-rich protein 2 33.0 15 0.00052 26.7 1.2 42 181-250 7-48 (76)
127 1zfo_A LAsp-1; LIM domain, zin 31.8 6.1 0.00021 25.5 -1.0 29 183-227 3-31 (31)
128 2dar_A PDZ and LIM domain prot 30.9 22 0.00076 26.8 1.9 40 182-250 24-63 (90)
129 2vpb_A Hpygo1, pygopus homolog 30.0 19 0.00064 27.0 1.3 52 182-246 7-65 (65)
130 3m62_A Ubiquitin conjugation f 26.7 31 0.001 38.2 2.7 50 180-250 888-938 (968)
131 3ql9_A Transcriptional regulat 25.6 22 0.00077 30.3 1.1 30 217-246 74-110 (129)
132 2jmi_A Protein YNG1, ING1 homo 25.4 9.2 0.00031 30.7 -1.2 26 220-247 50-76 (90)
133 2co8_A NEDD9 interacting prote 23.7 16 0.00055 27.3 -0.1 42 181-250 13-54 (82)
134 1x4i_A Inhibitor of growth pro 23.6 19 0.00065 27.2 0.3 28 220-249 30-57 (70)
135 1m3v_A FLIN4, fusion of the LI 23.0 47 0.0016 26.5 2.6 29 183-227 5-33 (122)
136 1x64_A Alpha-actinin-2 associa 21.5 34 0.0012 25.7 1.4 40 182-250 24-63 (89)
137 2dj7_A Actin-binding LIM prote 20.6 21 0.00073 26.7 0.0 41 181-249 13-53 (80)
138 2ku7_A MLL1 PHD3-CYP33 RRM chi 20.5 66 0.0022 25.0 2.9 32 217-248 7-45 (140)
139 2i50_A Ubiquitin carboxyl-term 20.1 19 0.00063 30.3 -0.5 33 215-247 4-37 (126)
No 1
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.43 E-value=8.2e-14 Score=112.02 Aligned_cols=76 Identities=25% Similarity=0.390 Sum_probs=49.7
Q ss_pred CCccccccchhhhccCCCccccccc-CCCCCCcEeeCCCChhhHHHHHhhcccCC-CCCCCCcccccCcccCCCCcch
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVR-SGDMPVVGVLSCRHVFHAECLEQTTPKTQ-KSDPSCPICLRLQEENSPDQQV 257 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~-~gD~~vVaVLPCGHVFHaeCLEqWl~k~~-~~dpsCPlCrk~~~~~~~~q~~ 257 (360)
....|+||++.|............. .....++.+++|||+||.+||++|+.... .....||+||+.+..+.++||-
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 3468999999997532211110000 01123455889999999999999995322 2246899999999876555543
No 2
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.4e-13 Score=103.29 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=47.1
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..+..|+||++.|.+.+|-+..... ++..++.+++|||+||.+||++|+... .+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~--~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENK--QEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTC--TTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccC--CCceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCCcch
Confidence 4677899999999876665543221 122244445699999999999999875 489999998864
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4e-13 Score=101.16 Aligned_cols=52 Identities=29% Similarity=0.618 Sum_probs=43.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.....|+||++.|.. ...+.+|+|||+||.+||++|+... ..||+|++.+..
T Consensus 21 ~~~~~C~IC~~~~~~--------------~~~~~~l~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFES--------------RQLLRVLPCNHEFHAKCVDKWLKAN----RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCB--------------TCEEEEETTTEEEETTHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCC--------------CCeEEEECCCCHhHHHHHHHHHHcC----CcCcCcCCcCCC
Confidence 466789999999873 2357789999999999999999764 589999998875
No 4
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.32 E-value=5.4e-13 Score=109.82 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=48.7
Q ss_pred CCCccccccchhhhccCCCccccc-ccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRI-VRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i-~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
..+.+|+||++.|...++.+.... ..+++...+.+|+|+|+||.+||++|+... .+||+||+.+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC----SBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC----CcCcCCCCcce
Confidence 356789999999998776553211 113344567889999999999999999764 58999999875
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=96.88 Aligned_cols=51 Identities=24% Similarity=0.519 Sum_probs=42.6
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|+||++.|.. ...+.+|+|||+||.+||++|+... ..||+|++.+..
T Consensus 14 ~~~~C~IC~~~~~~--------------~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKP--------------RDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCS--------------SSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCC--------------CCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccc
Confidence 45789999999873 2346788999999999999999764 489999998874
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.28 E-value=1.1e-12 Score=92.78 Aligned_cols=50 Identities=30% Similarity=0.617 Sum_probs=40.2
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeC-CCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLP-CGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
+...|+||++.|.. ...+.+|+ |||+||.+||++|+... ..||+|++.+.
T Consensus 4 ~~~~C~IC~~~~~~--------------~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELED--------------GEEARFLPRCGHGFHAECVDMWLGSH----STCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCT--------------TSCCEECSSSCCEECTTHHHHTTTTC----CSCSSSCCCSC
T ss_pred CCCcCccCCccccC--------------CCceEECCCCCCcccHHHHHHHHHcC----CcCcCCCCEeE
Confidence 45789999999873 22356776 99999999999999764 58999998763
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=1.4e-12 Score=96.26 Aligned_cols=51 Identities=33% Similarity=0.613 Sum_probs=42.5
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|+||++.|.. ...+.+|+|||+||.+||.+|+... ..||+|++.+..
T Consensus 13 ~~~~C~IC~~~~~~--------------~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEE--------------GEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCS--------------SSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSBSCS
T ss_pred CCCCCeeCCccccC--------------CCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCccccC
Confidence 45789999999862 2346789999999999999999775 479999999875
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.26 E-value=1.3e-12 Score=92.10 Aligned_cols=52 Identities=27% Similarity=0.589 Sum_probs=42.5
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.+...|+||++.|.+ ....+.+++|||+||.+||++|+... ..||+|++.+.
T Consensus 3 ~~~~~C~IC~~~~~~-------------~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHT-------------SRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCT-------------TTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcC-------------CCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCcCC
Confidence 356789999999863 12357789999999999999999875 58999998764
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.25 E-value=2.3e-12 Score=97.20 Aligned_cols=51 Identities=25% Similarity=0.617 Sum_probs=42.6
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|+||++.|.. ...+.+|+|||+||.+||++|+... ..||+|++.+..
T Consensus 14 ~~~~C~IC~~~~~~--------------~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYAL--------------GESVRQLPCNHLFHDSCIVPWLEQH----DSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCT--------------TSCEEECTTSCEEETTTTHHHHTTT----CSCTTTCCCCCC
T ss_pred CCCCCeeCCccccC--------------CCCEEEeCCCCeecHHHHHHHHHcC----CcCcCcCCccCC
Confidence 56789999999873 2346788999999999999999654 589999999875
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-12 Score=101.98 Aligned_cols=51 Identities=25% Similarity=0.573 Sum_probs=42.3
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.....|+||++.|.. ...+.+|+|||+||.+||++|+... ..||+|++.+.
T Consensus 38 ~~~~~C~IC~~~~~~--------------~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVK--------------GDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCT--------------TCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCBSS
T ss_pred CCCCCCcccChhhcC--------------CCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCccCC
Confidence 356789999999872 2357789999999999999999764 58999999875
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.2e-12 Score=90.77 Aligned_cols=56 Identities=25% Similarity=0.555 Sum_probs=43.4
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.|.+.. .....+.+++|||+||.+||++|+... ..||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~----------~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIV----------QNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHT----------TTTCCEEECSSSCEEEHHHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccc----------cccCCeEeCCCCChhcHHHHHHHHHcC----CCCCCCCCccCc
Confidence 45678999999987420 012345789999999999999999763 589999998753
No 12
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.19 E-value=2e-12 Score=108.85 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=1.0
Q ss_pred CCccccccchhhhccCCCccccc-ccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRI-VRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i-~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.+.+|+||++.|...++.+.... ...++...+..++|+|+||.+||++|+... .+||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 111 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC----CcCCCCCCeee
Confidence 45789999999987666553211 112344466678999999999999999874 58999999875
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.18 E-value=7.8e-12 Score=92.08 Aligned_cols=56 Identities=27% Similarity=0.581 Sum_probs=44.3
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.|.+. + .+...+.+++|||+||.+||++|+... ..||+|++.+..
T Consensus 8 ~~~~~C~IC~~~~~~~--------~--~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEI--------V--QNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHH--------H--TTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhcc--------c--cccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCccCh
Confidence 4667899999998741 0 112345789999999999999999764 589999999875
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=8.1e-12 Score=93.31 Aligned_cols=49 Identities=22% Similarity=0.476 Sum_probs=41.3
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.+.+ ..+|+|||+||.+||++|+... ..||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~-----------------~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH-----------------PVSLPCKHVFCYLCVKGASWLG----KRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS-----------------EEEETTTEEEEHHHHHHCTTCS----SBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC-----------------CEEccCCCHHHHHHHHHHHHCC----CcCcCcCchhCH
Confidence 466789999998762 3578999999999999999764 589999999874
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.5e-11 Score=91.08 Aligned_cols=56 Identities=20% Similarity=0.583 Sum_probs=43.5
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.|.. ......+|+|||+||.+||++|+.... ....||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~-------------~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTE-------------EQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCT-------------TSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccc-------------cCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccc
Confidence 356789999999873 112256789999999999999997641 23689999999875
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.14 E-value=1.2e-11 Score=89.01 Aligned_cols=55 Identities=24% Similarity=0.557 Sum_probs=43.2
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.+.+. . .....+.+++|||+||.+||++|+... ..||+|++.+..
T Consensus 2 ~~~~C~IC~~~~~~~--------~--~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEI--------V--QNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHH--------H--HTTCCEEEETTSCEEEHHHHHHHHHHC----SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCc--------c--ccCCCEEeCCCCCchhHHHHHHHHHcC----CCCCCCCccCCc
Confidence 457899999998731 0 012345789999999999999999763 589999999875
No 17
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=3e-11 Score=88.56 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=42.7
Q ss_pred CCCccccccch-hhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccCC
Q 018151 181 SDTFKCGLCER-FLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS 252 (360)
Q Consensus 181 ~d~~~C~ICle-~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~~ 252 (360)
++...|+||++ .|.+ ....+.+++|||+||.+||++|+.+. ...||+|++.+..+.
T Consensus 1 m~~~~C~IC~~~~~~~-------------~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 1 MDDQGCPRCKTTKYRN-------------PSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLRKSN 57 (65)
T ss_dssp CCTTCCSTTTTHHHHC-------------SSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSSCC
T ss_pred CCCCcCCcCCCCccCC-------------CccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCcccccc
Confidence 35678999999 7763 11223568999999999999997654 268999999997533
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4.7e-11 Score=88.29 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=40.5
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.+. + .+++|||+||.+||++|+... ..||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~----~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRA--------------D----LILPCAHSFCQKCIDKWSDRH----RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCC--------------S----EEETTTEEECHHHHHHSSCCC----SSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCcc--------------C----cccCCCCcccHHHHHHHHHCc----CcCCCcCCcccC
Confidence 35678999999875 2 578999999999999999743 689999999874
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.07 E-value=2.6e-11 Score=89.00 Aligned_cols=49 Identities=27% Similarity=0.554 Sum_probs=41.0
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|+||++.+.+ .+.+++|||+||.+||++|+... ..||+|++.+..
T Consensus 4 ~~~~C~IC~~~~~~----------------~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN----------------YSMALPCLHAFCYVCITRWIRQN----PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS----------------CEEETTTTEEESTTHHHHHHHHS----CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC----------------CcEecCCCCeeHHHHHHHHHhCc----CcCcCCChhhHh
Confidence 45689999998762 24688999999999999999764 589999998864
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=85.80 Aligned_cols=51 Identities=22% Similarity=0.533 Sum_probs=41.1
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.|.+ ..+|+|||+||.+||++|+... .....||+|++.+..
T Consensus 19 ~~~~C~IC~~~~~~-----------------~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQK-----------------PVTIDCGHNFCLKCITQIGETS-CGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSS-----------------EEECTTCCEEEHHHHHHHCSSS-CSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCC-----------------eEEcCCCChhhHHHHHHHHHcC-CCCCCCCCCCCcCCc
Confidence 56789999998762 3467999999999999999732 124689999999875
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=5e-11 Score=89.21 Aligned_cols=50 Identities=20% Similarity=0.569 Sum_probs=40.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
+...|+||++.|.+ ++.+++|||+||.+||++|+... ..||+|++.+...
T Consensus 14 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLID----------------ATTITECLHTFCKSCIVRHFYYS----NRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSS----------------CEECSSSCCEECHHHHHHHHHHC----SSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHC----------------cCEECCCCCHHHHHHHHHHHHcC----CcCCCcCcccCcc
Confidence 45789999998862 24445999999999999999763 5899999999753
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=7.9e-11 Score=92.57 Aligned_cols=54 Identities=22% Similarity=0.479 Sum_probs=42.5
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCC-----ChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCG-----HVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..+...|.||++.+.+ + ..+ ++||. |.||.+||++|+.... +.+||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~-------------~-~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDD-------------E-SPL-ITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCS-------------S-SCE-ECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccC-------------C-Cee-EeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeec
Confidence 3466789999998762 1 123 68996 9999999999998753 3689999999974
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=7.8e-11 Score=86.61 Aligned_cols=50 Identities=24% Similarity=0.594 Sum_probs=40.2
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.+.+ ..+++|||+||.+||++|+... ...||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS-----------------PKQTECGHRFCESCMAALLSSS---SPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESS-----------------CCCCSSSCCCCHHHHHHHHTTS---SCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcC-----------------eeECCCCCHHHHHHHHHHHHhC---cCCCCCCCcCCCh
Confidence 356789999999862 1237999999999999999633 3689999999875
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2.9e-10 Score=86.57 Aligned_cols=47 Identities=30% Similarity=0.616 Sum_probs=39.6
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
....|+||++.|.+ ..+++|||+||..||.+|+... ..||+|++.+.
T Consensus 14 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN-----------------PVVTKCRHYFCESCALEHFRAT----PRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS-----------------EEECTTSCEEEHHHHHHHHHHC----SBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC-----------------eeEccCCCHhHHHHHHHHHHCC----CcCCCcCcccc
Confidence 45689999999862 3368999999999999999753 58999999986
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.96 E-value=1.9e-10 Score=96.35 Aligned_cols=47 Identities=23% Similarity=0.690 Sum_probs=39.5
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
...|+||++.|.+ ..+|+|||+||..||.+|+... ..||+|++.+..
T Consensus 53 ~~~C~iC~~~~~~-----------------~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE-----------------AVTLNCAHSFCSYCINEWMKRK----IECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS-----------------EEEETTSCEEEHHHHHHHTTTC----SBCTTTCCBCCC
T ss_pred cCCCcccCcccCC-----------------ceECCCCCCccHHHHHHHHHcC----CcCCCCCCcCCC
Confidence 3579999998862 4578999999999999999764 589999999864
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=6.4e-10 Score=80.83 Aligned_cols=46 Identities=24% Similarity=0.626 Sum_probs=36.3
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 244 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlC 244 (360)
.+...|+||++.|.+ ..+|+|||+||.+||++|+.... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK-----------------PVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS-----------------CEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhCC-----------------eEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 356789999998862 34679999999999999997421 23689998
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.95 E-value=2.9e-10 Score=85.78 Aligned_cols=49 Identities=20% Similarity=0.668 Sum_probs=39.7
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeC-CCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLP-CGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
+...|+||++.|.+ ..+|+ |||+||..||++|+.... ...||+|++.+.
T Consensus 14 ~~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTD-----------------AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTT-----------------CEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhC-----------------CeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCC
Confidence 56789999998862 33588 999999999999997642 358999999754
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.93 E-value=2.9e-10 Score=85.62 Aligned_cols=50 Identities=10% Similarity=0.301 Sum_probs=41.2
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.|.+ ..+++|||+|+..||++|+... ...||+|++.+..
T Consensus 6 ~~~~~C~IC~~~~~~-----------------Pv~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-----------------PVIVSTGQTYERSSIQKWLDAG---HKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS-----------------EEEETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC-----------------CEEcCCCCeecHHHHHHHHHHC---cCCCCCCcCCCCh
Confidence 356789999999862 3457999999999999999753 3689999999864
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.93 E-value=2.4e-10 Score=85.67 Aligned_cols=52 Identities=21% Similarity=0.532 Sum_probs=41.3
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCC---CCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ---KSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~---~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.|.+ ..+|+|||+||.+||++|+.... .....||+|+..+..
T Consensus 11 ~~~~C~IC~~~~~~-----------------p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTE-----------------PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSS-----------------CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCC-----------------eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 56789999999862 22479999999999999997631 124689999999874
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=2.8e-10 Score=91.57 Aligned_cols=56 Identities=27% Similarity=0.596 Sum_probs=43.7
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.|.+. +. +...+.+++|||+||.+||++|+... ..||+|++.+..
T Consensus 5 ~~~~~C~IC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHH--------HH--TTCCEEEETTCCEEEHHHHHHHHTTC----SBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCc--------cc--cccCeEecCCCChhhHHHHHHHHHhC----CCCCCCCCcCcc
Confidence 3567899999998731 00 12345789999999999999999764 489999999975
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.92 E-value=4.2e-10 Score=92.17 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=40.3
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.|.+ ..+++|||+||..||++|+... ...||+|+..+..
T Consensus 51 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-----------------PITTVCQHNVCKDCLDRSFRAQ---VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-----------------EEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-----------------cEEeeCCCcccHHHHHHHHhHC---cCCCCCCCccCCC
Confidence 44679999999862 3467999999999999999743 2589999999975
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.91 E-value=4.9e-10 Score=84.17 Aligned_cols=52 Identities=19% Similarity=0.527 Sum_probs=41.3
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCC--CCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ--KSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~--~~dpsCPlCrk~~~~ 250 (360)
....|+||++.+.+ ..+++|||+||.+||++|+.... .....||+|+..+..
T Consensus 18 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKE-----------------PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSS-----------------CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCc-----------------ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45789999999862 23789999999999999997631 123689999999874
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4.7e-10 Score=79.54 Aligned_cols=45 Identities=24% Similarity=0.689 Sum_probs=35.5
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 244 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlC 244 (360)
+...|+||++.+.+ ..+|+|||+||.+||++|+...+ ....||+|
T Consensus 14 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE-----------------PVIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS-----------------CCCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred cCCCCccCCcccCc-----------------cEeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 56789999999862 23589999999999999975421 24689998
No 34
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=1.4e-09 Score=85.09 Aligned_cols=58 Identities=24% Similarity=0.570 Sum_probs=44.0
Q ss_pred CCCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccCCC
Q 018151 178 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 253 (360)
Q Consensus 178 ~~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~~~ 253 (360)
..+.....|+||.+.|.+ + +.-..|+|.||.+||.+||.... ..+||+|+..|....+
T Consensus 10 ~y~~~i~~C~IC~~~i~~------------g----~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQ------------G----QSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIP 67 (74)
T ss_dssp CCSSSSCBCSSSCCBCSS------------S----EECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCCC
T ss_pred hccCCCCcCcchhhHccc------------C----CccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCCC
Confidence 344567889999999862 1 12239999999999999997642 3689999999985443
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.89 E-value=3.3e-10 Score=90.35 Aligned_cols=50 Identities=18% Similarity=0.460 Sum_probs=41.2
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.|.. ++.+++|||+||..||.+|+.... ..||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~~----------------p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD----------------ARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS----------------EEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBCCG
T ss_pred CCCCCccCCccccC----------------ccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcCCH
Confidence 45779999999862 243489999999999999998753 589999999864
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.85 E-value=6e-10 Score=95.31 Aligned_cols=50 Identities=22% Similarity=0.581 Sum_probs=40.4
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|+||++.|.+ ++.+++|||+||..||++|+... ...||+|+..+..
T Consensus 53 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN----------------TMTTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS----------------EEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC----------------cCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 45689999999872 24445999999999999999863 2689999999853
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=5.1e-10 Score=84.05 Aligned_cols=52 Identities=31% Similarity=0.698 Sum_probs=40.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC--CCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT--QKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~--~~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.+.+ ..+|+|||+||.+||++|+... ......||+|+..+..
T Consensus 18 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ-----------------PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS-----------------CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC-----------------ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45789999999862 2357999999999999998761 1123689999999874
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=7.2e-10 Score=89.18 Aligned_cols=56 Identities=27% Similarity=0.596 Sum_probs=43.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.|.+. +. ....+..++|||+||..||++|+... .+||+|+..+..
T Consensus 70 ~~~~~C~iC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHH--------HH--TTCCEEEETTSBEEEHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccc--------cc--cCcceEeCCCCChhhHHHHHHHHHcC----CCCCCCCCcCCh
Confidence 4567899999998731 00 12245688999999999999999765 489999999975
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.84 E-value=7.3e-10 Score=88.73 Aligned_cols=49 Identities=22% Similarity=0.604 Sum_probs=40.3
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.|.+ ++.+++|||+||..||++|+... ..||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID----------------ATTIIECLHSFCKTCIVRYLETS----KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS----------------EEEETTTCCEEEHHHHHHHHTSC----SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC----------------cCEeCCCCChhhHHHHHHHHHhC----CcCcCCCccccc
Confidence 45789999999862 24344999999999999999764 589999999875
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.84 E-value=7e-10 Score=87.40 Aligned_cols=49 Identities=22% Similarity=0.661 Sum_probs=39.6
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.|.+ ++.+++|||+||..||++|+... ..||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI----------------AMIIPQCSHNYCSLCIRKFLSYK----TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS----------------EEECTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC----------------cCEECCCCCHhhHHHHHHHHHCC----CCCCCCCCcCCh
Confidence 34679999999862 23334899999999999999754 589999999874
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.84 E-value=9.8e-10 Score=85.09 Aligned_cols=50 Identities=20% Similarity=0.658 Sum_probs=40.5
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeC-CCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLP-CGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.+...|+||++.|.+ ..+|+ |||+|+..||++|+.... ...||+|++.+.
T Consensus 11 ~~~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD-----------------AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS-----------------CEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC-----------------ceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 356789999999862 34688 999999999999997542 368999999973
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.82 E-value=9.2e-10 Score=88.84 Aligned_cols=48 Identities=29% Similarity=0.724 Sum_probs=40.2
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
+...|+||++.|.+ ..+|+|||+|+..||.+|+.+.. ..||+|++.+.
T Consensus 14 ~~~~C~iC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVE-----------------PVTLPCNHTLCKPCFQSTVEKAS---LCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSS-----------------CEECTTSCEECHHHHCCCCCTTT---SBCTTTCCBCH
T ss_pred CCCCCccCCcccCc-----------------eeEcCCCCHHhHHHHHHHHhHCc---CCCCCCCcccC
Confidence 56789999999862 34679999999999999997643 68999999986
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.79 E-value=2e-09 Score=92.42 Aligned_cols=50 Identities=26% Similarity=0.532 Sum_probs=41.1
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
+...|+||++.|.+ ..+++|||+|+..||++|+... ...||+|+..+...
T Consensus 77 ~~~~C~IC~~~~~~-----------------pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-----------------PVTTECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS-----------------EEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC-----------------CEEcCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 44689999998862 3358999999999999999764 25899999999854
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=2.2e-09 Score=85.31 Aligned_cols=50 Identities=18% Similarity=0.568 Sum_probs=39.7
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
...|+||++.+.+ ..+++|||+||..||.+|+.... ....||+|+..+..
T Consensus 21 ~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKE-----------------PVSTKCDHIFCKFCMLKLLNQKK-GPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSS-----------------CCBCTTSCCCCSHHHHHHHHSSS-SSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcC-----------------eEECCCCCHHHHHHHHHHHHhCC-CCCCCcCCCCcCCH
Confidence 4579999998762 22479999999999999997642 23589999998874
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.69 E-value=5.1e-09 Score=84.59 Aligned_cols=50 Identities=24% Similarity=0.530 Sum_probs=40.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
+...|+||++.+.+ ..+++|||+||..||++|+.... ..||+|++.+...
T Consensus 22 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILAD-----------------PVETSCKHLFCRICILRCLKVMG---SYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcC-----------------cEEcCCCCcccHHHHHHHHhHCc---CcCCCCCCCCCHh
Confidence 35679999999862 23579999999999999998642 5899999998753
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.68 E-value=4.3e-09 Score=85.80 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=41.7
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
.+...|+||++.|.+ ..+++|||+|+..||++|+.... ..||+|+..+...
T Consensus 16 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE-----------------AVQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC-----------------eEECCcCChhhHHHHHHHHhhCC---CCCCCCCCCcCHH
Confidence 356789999999862 24579999999999999998753 4899999998753
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.65 E-value=9.7e-09 Score=80.05 Aligned_cols=52 Identities=21% Similarity=0.478 Sum_probs=40.0
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEee--CCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL--PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.+.. ....++ +|||.|+..||.++.... ...||+||+.+..
T Consensus 9 ~~~~~CpICle~~~~---------------~d~~~~p~~CGH~fC~~Cl~~~~~~~---~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI---------------DDINFFPCTCGYQICRFCWHRIRTDE---NGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCT---------------TTTTCCSSTTSCCCCHHHHHHHTTSS---CSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCcc---------------ccccccccCCCCCcCHHHHHHHHhcC---CCCCCCCCCccCC
Confidence 356789999998752 122344 599999999999987543 3689999999985
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=1.2e-08 Score=83.03 Aligned_cols=46 Identities=26% Similarity=0.744 Sum_probs=38.0
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEee-CCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL-PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.|.+ ++ ++ +|||+|+..||.+|+. ..||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~~----------------pv-~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILRE----------------PV-CLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSS----------------CB-CCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhC----------------cc-EeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 45779999999862 23 45 9999999999999986 479999999864
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.48 E-value=3.9e-08 Score=97.42 Aligned_cols=48 Identities=21% Similarity=0.456 Sum_probs=39.8
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
...|+||.+.+. .+.+++|||+||..||.+|+... ...||+||..+..
T Consensus 332 ~~~C~ICle~~~-----------------~pv~lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK-----------------DVKIEPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC-----------------CEEEETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC-----------------CeEEeCCCChhhHHHHHHHHhcC---CCCCCCCCCccCC
Confidence 468999998875 25679999999999999999732 2589999999874
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.46 E-value=2.6e-08 Score=84.88 Aligned_cols=48 Identities=19% Similarity=0.481 Sum_probs=39.4
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
+...|+||++.|.+ ...++|||+|+..||++|+.... ..||+|+..+.
T Consensus 30 ~~~~C~IC~~~~~~-----------------pv~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRR-----------------PFQAQCGHRYCSFCLASILSSGP---QNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHGGGSC---EECHHHHHTTC
T ss_pred cCcCCCCCChhhcC-----------------cEECCCCCccCHHHHHHHHhcCC---CCCCCCCCccc
Confidence 56789999999872 23579999999999999997542 58999999763
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=1.8e-08 Score=72.84 Aligned_cols=45 Identities=27% Similarity=0.589 Sum_probs=36.6
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.|.+ ..+|+|||+|+..||++| ...||+|++.+..
T Consensus 5 ~~~~C~IC~~~~~~-----------------p~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKC-----------------PKLLPCLHTLCSGCLEAS-------GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBC-----------------CSCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCC-----------------eEEcCCCCcccHHHHccC-------CCCCCcCCcEeec
Confidence 45679999998862 246899999999999984 2579999998864
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.44 E-value=4.3e-08 Score=74.46 Aligned_cols=44 Identities=20% Similarity=0.545 Sum_probs=36.9
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCCh-hhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHV-FHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|.||++.+. .+..|||||+ |...|+.+| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-----------------AIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-----------------CEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-----------------CEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 3467999998875 2557899999 999999999 379999998874
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.37 E-value=1.1e-07 Score=74.30 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=41.1
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.|.+ ..+++|||+|-..||++|+... .+||+|+..+..
T Consensus 12 p~~~~CpI~~~~m~d-----------------PV~~~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-----------------PVRLPSGTVMDRSIILRHLLNS----PTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred chheECcccCchhcC-----------------CeECCCCCEECHHHHHHHHhcC----CCCCCCcCCCCh
Confidence 357889999999873 3468999999999999999752 689999998864
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.36 E-value=1.4e-07 Score=76.34 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=41.4
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.|.+ ..+++|||+|-..||++|+.. +.+||+|+..+..
T Consensus 27 p~~~~CpI~~~~m~d-----------------PV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-----------------PVRLPSGTIMDRSIILRHLLN----SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-----------------EEEETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-----------------CeECCCCCEEchHHHHHHHHc----CCCCCCCCCCCCh
Confidence 467899999999873 346899999999999999974 3699999998874
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=1.3e-07 Score=84.48 Aligned_cols=51 Identities=6% Similarity=0.057 Sum_probs=42.0
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..+...|+||++.|.+ ..+++|||+|-..||++|+.... .+||+|+..+..
T Consensus 205 ~~~~~~c~i~~~~~~d-----------------Pv~~~~gh~f~~~~i~~~~~~~~---~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-----------------PCITPSGITYDRKDIEEHLQRVG---HFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSS-----------------EEECSSCCEEETTHHHHHHHHTC---SSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcC-----------------CeECCCCCEECHHHHHHHHHHCC---CCCcCCCCCCch
Confidence 3467899999999873 34689999999999999997643 459999999864
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.33 E-value=2e-07 Score=75.18 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=41.3
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCC-ChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCG-HVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.|.+ ..+++|| |+|-..||++|+.. +.+||+|+..+..
T Consensus 20 p~~~~CpI~~~~m~d-----------------PV~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-----------------PVVLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-----------------EEECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-----------------CeECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCCh
Confidence 357889999999873 3468999 99999999999975 2689999998874
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=2.7e-07 Score=73.15 Aligned_cols=50 Identities=20% Similarity=0.467 Sum_probs=39.0
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeC-CCChhhHHHHHhhcccCC--CCCCCCcc--cccC
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQ--KSDPSCPI--CLRL 247 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLP-CGHVFHaeCLEqWl~k~~--~~dpsCPl--Crk~ 247 (360)
.....|+||++.|.+ ..+++ |||+|-..||++|+.... .....||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~d-----------------PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK-----------------PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS-----------------EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC-----------------CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456789999999872 33565 999999999999997631 22468999 9866
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.26 E-value=2.2e-07 Score=79.59 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=41.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
.+...|+||++.|.. ...++|||+|...||++|+.... ..||+|+..+...
T Consensus 16 ~~~~~C~IC~~~~~~-----------------pv~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALRE-----------------AVQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcC-----------------cEECCCCCHHHHHHHHHHHHhCC---CCCCCCccCcchh
Confidence 356789999999872 23579999999999999997653 4899999998753
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.26 E-value=2.5e-07 Score=68.89 Aligned_cols=49 Identities=14% Similarity=0.387 Sum_probs=38.8
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEee--CCCCh-hhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL--PCGHV-FHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|.||++...+ +.++ ||||+ |-.+|+++|.... ..||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~-----------------~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKN-----------------GCIVHGKTGHLMACFTCAKKLKKRN----KPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSC-----------------EEEEETTEEEEEECHHHHHHHHHTT----CCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCC-----------------EEEECCCCCChhhHHHHHHHHHHcC----CcCCCcCcchhc
Confidence 466789999987651 3445 99999 6799999998653 589999999864
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3.6e-07 Score=69.23 Aligned_cols=43 Identities=21% Similarity=0.534 Sum_probs=34.9
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCCh-hhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHV-FHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
...|+||++.+.+ +.++||||+ |..+|+++. ..||+||+.+..
T Consensus 25 ~~~C~IC~~~~~~-----------------~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA-----------------IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC-----------------BCCSSSCCCCBCHHHHHHC--------SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC-----------------EEEecCCCHHHHHHHhhCC--------CCCccCCceecC
Confidence 4579999988752 446899999 999999753 479999999875
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.18 E-value=3.7e-07 Score=67.70 Aligned_cols=49 Identities=22% Similarity=0.444 Sum_probs=39.0
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEee--CCCCh-hhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL--PCGHV-FHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.....|.||++...+ +.++ ||||+ |-.+|+.+|.... ..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~-----------------~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD-----------------GNIIHGRTGHLVTCFHCARRLKKAG----ASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSC-----------------EEEEETTEEEEEECHHHHHHHHHTT----CBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCC-----------------eEEEecCCCCHhHHHHHHHHHHHhC----CcCCCcCchhhc
Confidence 456789999987651 3345 99998 9999999998653 589999999864
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.13 E-value=7.5e-07 Score=66.50 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=36.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCC--C---hhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR--H---VFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCG--H---VFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
+...|.||++... + + . ++||. | .||.+||++|+.... +..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~--------------~-~-l-~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--------------N-E-R-FRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--------------C-C-C-CCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC--------------C-c-e-ecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 5678999987632 1 1 2 57865 4 999999999997643 368999999875
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=2.5e-06 Score=64.45 Aligned_cols=45 Identities=24% Similarity=0.636 Sum_probs=37.0
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCCh-hhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHV-FHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|.||++... .+.+|||||+ |...|++.. ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV-----------------NWVLLPCRHTCLCDGCVKYF--------QQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC-----------------CCEETTTTBCCSCTTHHHHC--------SSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC-----------------CEEEECCCChhhhHHHHhcC--------CCCCCCCcchhc
Confidence 35678999998754 3668999999 999999942 479999999875
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.96 E-value=2.2e-06 Score=76.76 Aligned_cols=50 Identities=6% Similarity=0.066 Sum_probs=41.4
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.+...|+||++.|.+ ..+++|||+|-..||++|+.... .+||+|+..+..
T Consensus 104 p~~f~CPI~~elm~D-----------------PV~~~~Ghtfer~~I~~~l~~~~---~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-----------------PCITPSGITYDRKDIEEHLQRVG---HFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-----------------CeECCCCCEECHHHHHHHHHhCC---CCCCCCcCCCCh
Confidence 477899999999872 34679999999999999997642 379999998864
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.90 E-value=2.6e-06 Score=65.94 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=36.2
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCCh-hhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHV-FHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
...|.||++.+. .+..+||||+ |-..|+.+|. .||+||..+..
T Consensus 18 ~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI-----------------NSTFCPCGHTVCCESCAAQLQ--------SCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC-----------------CEEEETTCBCCBCHHHHTTCS--------BCTTTCCBCCE
T ss_pred CCEeEEeCcccC-----------------cEEEECCCCHHHHHHHHHhcC--------cCCCCCchhhC
Confidence 457999998765 2568999999 9999999872 79999999975
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.88 E-value=2.9e-06 Score=66.46 Aligned_cols=52 Identities=23% Similarity=0.470 Sum_probs=37.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC----CCCCCCCcc--cccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT----QKSDPSCPI--CLRL 247 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~----~~~dpsCPl--Crk~ 247 (360)
...+|+||++.+.. ...+.+++|||.|..+||.+++... ......||. |+..
T Consensus 4 ~~~~C~IC~~~~~~--------------~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPV--------------EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBG--------------GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCccccc--------------ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45789999998762 1123334799999999999988642 112358999 9998
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.80 E-value=2.5e-06 Score=84.34 Aligned_cols=58 Identities=26% Similarity=0.562 Sum_probs=40.2
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCc--EeeCCCChhhHHHHHhhcccCCC-------CCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVV--GVLSCRHVFHAECLEQTTPKTQK-------SDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vV--aVLPCGHVFHaeCLEqWl~k~~~-------~dpsCPlCrk~~~~ 250 (360)
....|+||...+.. .+.++.. .-+.|||.||..||.+|+..... -...||.|++.+..
T Consensus 307 ~~~ECaICys~~l~-----------~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLD-----------GGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCT-----------TCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecC-----------CCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45679999988763 1222221 23589999999999999965210 01369999998875
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.79 E-value=3.8e-06 Score=81.52 Aligned_cols=44 Identities=25% Similarity=0.586 Sum_probs=37.1
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCCh-hhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHV-FHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
+...|+||++.+. .+..|||||+ |...|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~-----------------~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV-----------------SVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC-----------------CEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC-----------------ceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 3578999999876 2557899999 999999998 379999999874
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.70 E-value=9.5e-06 Score=77.19 Aligned_cols=52 Identities=15% Similarity=0.338 Sum_probs=41.7
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcc--cccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPI--CLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPl--Crk~~~~ 250 (360)
.....|+||++.|.+ +|....|||+|-..||.+|+.... ...||+ |++.+..
T Consensus 179 ~~el~CPIcl~~f~D----------------PVts~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEA----------------PLISRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSS----------------EEEESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccC----------------CeeeCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCch
Confidence 456789999999972 354569999999999999997532 358999 9998764
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.59 E-value=1.7e-05 Score=59.09 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=38.5
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEee-CCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL-PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
...|+||++.+.+ ..++ +|||+|=.+||++|+.+. .+||+++..+..
T Consensus 3 ~~~CpIs~~~m~d-----------------PV~~~~sG~~yer~~I~~~l~~~----~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRR-----------------PVLSPKSRTIFEKSLLEQYVKDT----GNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSS-----------------EEEETTTTEEEEHHHHHHHHHHH----SBCTTTCCBCCG
T ss_pred eEEecCCCCCCCC-----------------CEEeCCCCcEEcHHHHHHHHHhC----CCCcCCcCCCCh
Confidence 3579999999872 2456 899999999999999864 369999998875
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.45 E-value=5.4e-05 Score=69.99 Aligned_cols=52 Identities=23% Similarity=0.550 Sum_probs=39.6
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 251 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~ 251 (360)
....|.||.+.+.+ +-.. -.|+|.||.+|++.|+.... .+.||.|+..|...
T Consensus 179 ~i~~C~iC~~iv~~------------g~~C----~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQ------------GQSC----ETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSS------------CEEC----SSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhC------------Cccc----CccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCC
Confidence 46789999999873 1111 13999999999999986532 46899999999753
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.20 E-value=7.7e-05 Score=62.17 Aligned_cols=84 Identities=19% Similarity=0.426 Sum_probs=60.4
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcccCCCCcchhhhhcc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQVFSRLKN 263 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~~~~~q~~~~~~rn 263 (360)
.-|.+|.-++.. -.+++||.|+|-.+|+..|..+.. ..||+|+..+...+ ..
T Consensus 2 hfC~~C~~Pi~i----------------ygRmIPCkHvFCydCa~~~~~~~~---k~Cp~C~~~V~rVe-------~~-- 53 (101)
T 3vk6_A 2 HFCDKCGLPIKV----------------YGRMIPCKHVFCYDCAILHEKKGD---KMCPGCSDPVQRIE-------QC-- 53 (101)
T ss_dssp CBCTTTCSBCSE----------------EEEEETTCCEEEHHHHHHHHHTTC---CBCTTTCCBCSEEE-------EE--
T ss_pred eecCccCCCeEE----------------EeeeccccccHHHHHHHHHHhccC---CCCcCcCCeeeeeE-------Ee--
Confidence 358889888763 367899999999999999986653 58999999997511 00
Q ss_pred cCCccccccCCCCCCCCCCCCCCCcccccccCCCCchhhhhhhhhhhcccccCC
Q 018151 264 SFPRLRQSCDNGQSRPWGCPQAGGCVEGASHVPPRNTVLLLNRNRVKKNLSLKG 317 (360)
Q Consensus 264 ~~P~l~~~~d~G~sr~wg~a~~gd~v~~a~~~p~~~~~~~l~r~r~kk~~~~kg 317 (360)
.. ...|.|+...+|- .| .|++.-++.|.-++=
T Consensus 54 ---------~~--~~if~C~~~~~Ck---------rt--yLs~rdlqaHI~~~H 85 (101)
T 3vk6_A 54 ---------TR--GSLFMCSIVQGCK---------RT--YLSQRDLQAHINHRH 85 (101)
T ss_dssp ---------EG--GGCCCCCCCCCCC---------CC--CSSHHHHHHHHHHHT
T ss_pred ---------cc--CCEEECCCCCCHH---------HH--hcCHHHHHHHHHHHh
Confidence 01 1236677667886 66 788877777766653
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.83 E-value=0.15 Score=38.70 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=36.0
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 248 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~ 248 (360)
.....|.||.+. . + .+.=-.|..+||..||+..+......+..||.|....
T Consensus 10 ~~~~~C~vC~~~-~--------------~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG-T--------------D--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC-T--------------T--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC-C--------------e--EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 455779999753 1 1 1112269999999999988776655568999998654
No 74
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.98 E-value=0.15 Score=38.55 Aligned_cols=54 Identities=19% Similarity=0.457 Sum_probs=35.4
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
....|.||.+.... ...|.-=.|.-.||..||.--.......+..||.|...+.
T Consensus 17 ~~~~C~~C~~~~~~--------------~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDG--------------SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSS--------------CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCC--------------CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 44569999877321 0112222589999999998765443334588999987654
No 75
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.59 E-value=0.26 Score=34.74 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=23.4
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCcccccC
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 247 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~ 247 (360)
.|.-.||..||+.-+.+....+..||.|...
T Consensus 20 ~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 20 ECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp TTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 6899999999986554443345789999764
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.17 E-value=0.72 Score=37.66 Aligned_cols=51 Identities=24% Similarity=0.552 Sum_probs=31.7
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhh------------cccCCCCCCCCccccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT------------TPKTQKSDPSCPICLR 246 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqW------------l~k~~~~dpsCPlCrk 246 (360)
..+..|.||...=.+ ++ .-=-.|+-|||..||++. +.-......+||-|..
T Consensus 13 ~~D~~C~VC~~~t~~-------------~l--~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 13 VNDEMCDVCEVWTAE-------------SL--FPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCSCCCTTTCCCCSS-------------CC--SSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCcccCcccccccc-------------ce--eccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 466789999854221 11 112269999999999997 1111112368999944
No 77
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.87 E-value=0.12 Score=37.50 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=33.6
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCccccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 246 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk 246 (360)
.....|.||.+.- + .+.=-.|.-.||..||..-+......+..||.|.+
T Consensus 7 ~~~~~C~vC~~~g---------------~--ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG---------------Q--LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS---------------C--CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCC---------------e--EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3557799998641 1 12222789999999999765544444578999975
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.83 E-value=0.45 Score=35.18 Aligned_cols=49 Identities=22% Similarity=0.535 Sum_probs=33.3
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccC
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 247 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~ 247 (360)
....|.||.+.- + .+.=-.|--.||..||..-+.+....+..||.|.+.
T Consensus 10 ~~~~C~vC~~~g---------------~--ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQGG---------------E--IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCCS---------------S--EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCCC---------------c--EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456799998631 1 111126888999999998655444446899999763
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.49 E-value=0.15 Score=37.41 Aligned_cols=56 Identities=21% Similarity=0.469 Sum_probs=36.5
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCC-CCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ-KSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~-~~dpsCPlCrk~~~~ 250 (360)
....|+||.+.+.. +..-|.--.|..-||..|+.--..... .....||.|+.....
T Consensus 5 e~~~C~~C~~~~~~-------------~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 5 SSGQCGACGESYAA-------------DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp SCCCCSSSCCCCCS-------------SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCccCC-------------CCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 45679999988642 112244447899999999965433211 235889999875543
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=77.54 E-value=0.25 Score=36.13 Aligned_cols=51 Identities=22% Similarity=0.491 Sum_probs=34.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.+..|.||.+. . + .+.=-.|.-.||..||..-+......+..||.|.....
T Consensus 4 ~~~~C~vC~~~-g--------------~--ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS-G--------------Q--LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC-S--------------S--CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC-C--------------c--EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45779999864 1 1 12222689999999999655544444578999987654
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=76.92 E-value=0.48 Score=35.40 Aligned_cols=52 Identities=19% Similarity=0.499 Sum_probs=34.8
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.....|.||.+. . + .+.=-.|--.||..||..-+......+..||.|...-.
T Consensus 6 ~~~~~C~vC~~~-g--------------~--ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 6 KNEDECAVCRDG-G--------------E--LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SCCCSBSSSSCC-S--------------S--CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCccCCCC-C--------------C--EEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 356779999864 1 1 12122688899999999655444334578999987554
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=76.72 E-value=0.69 Score=37.22 Aligned_cols=50 Identities=18% Similarity=0.487 Sum_probs=32.2
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 245 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCr 245 (360)
.+..|.||.+.-.. ...+.=-.|+..||..||+..+.........||-|+
T Consensus 6 ~~~~C~~C~~~g~~--------------~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDL--------------LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCT--------------TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCC--------------cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 56789999876220 011222479999999999987654333346677665
No 83
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.62 E-value=2.9 Score=33.71 Aligned_cols=31 Identities=23% Similarity=0.545 Sum_probs=22.3
Q ss_pred CC-ChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 218 CR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 218 CG-HVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
|. .-||..|+. +......+..||.|+.....
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 66 689999998 43433345889999876553
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.46 E-value=0.66 Score=34.25 Aligned_cols=32 Identities=25% Similarity=0.663 Sum_probs=24.2
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCcccccCc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 248 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~ 248 (360)
.|--+||..||..-+......+..||.|....
T Consensus 26 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 26 TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 58899999999976555444457899998653
No 85
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.80 E-value=0.36 Score=38.55 Aligned_cols=54 Identities=22% Similarity=0.519 Sum_probs=34.8
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 248 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~ 248 (360)
.+...|.||.+.-.. .. .+.-=.|...||..||..=+......+..||.|....
T Consensus 14 ~~~~~C~vC~~~~~~------~~--------ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDED------DK--------LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGGG------GG--------CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCCC------CC--------EEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 456679999876321 00 1111158999999999855544333457899998754
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=74.00 E-value=0.8 Score=39.80 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=25.7
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.|--+||..||..-+......+..||.|+....
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 488999999998776654444588999997654
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.95 E-value=0.43 Score=38.44 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=24.8
Q ss_pred eCCCChhhHHHHHhhcccCCCCCCCCcccccCc
Q 018151 216 LSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 248 (360)
Q Consensus 216 LPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~ 248 (360)
-.|...||..||+.-+......+..||.|..-.
T Consensus 73 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 73 DTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp SSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred CCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 379999999999876554444467899997654
No 88
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=73.49 E-value=0.77 Score=40.79 Aligned_cols=33 Identities=27% Similarity=0.541 Sum_probs=25.6
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.|..+||..||..-+......+..||.|+..-.
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 488999999998776654444688999997653
No 89
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=69.21 E-value=2 Score=33.51 Aligned_cols=30 Identities=30% Similarity=0.677 Sum_probs=22.7
Q ss_pred CCCChhhHHHHHhhcccCCCCC-CCCccccc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSD-PSCPICLR 246 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~d-psCPlCrk 246 (360)
.|...||..||..-+......+ ..||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5888999999997665544444 78999985
No 90
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=69.11 E-value=0.98 Score=39.99 Aligned_cols=32 Identities=25% Similarity=0.600 Sum_probs=24.7
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCcccccCc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 248 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~ 248 (360)
.|--+||..||..-+......+..||.|+...
T Consensus 19 ~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 19 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 58889999999876554444468899998764
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=68.89 E-value=0.58 Score=34.39 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=35.3
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhccc--C-CCCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK--T-QKSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k--~-~~~dpsCPlCrk~~~ 249 (360)
.....|.||.+..... +...+.=-.|.-.||..||..-+.. . ...+..||.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~------------~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEA------------PNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBT------------TBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCC------------CCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 3567899999764310 1111222368999999999864432 1 223578999986543
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=67.59 E-value=1.7 Score=35.09 Aligned_cols=51 Identities=24% Similarity=0.527 Sum_probs=34.9
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
....|.||.+.- + .+-=-.|--+||..||..-+......+..||.|...-.
T Consensus 24 n~~~C~vC~~~g---------------~--LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 24 SATICRVCQKPG---------------D--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSCCSSSCSSS---------------C--CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCcCcCcCCCC---------------C--EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 456799998641 1 11112588889999998876555445688999987644
No 93
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.00 E-value=1.6 Score=33.11 Aligned_cols=53 Identities=21% Similarity=0.526 Sum_probs=32.4
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC-----CCCCCCCcccccCccc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-----QKSDPSCPICLRLQEE 250 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~-----~~~dpsCPlCrk~~~~ 250 (360)
...| ||.+.... ...|.--.|.--||..|+.--.... ......||.|+...+.
T Consensus 16 ~~~C-~C~~~~~~--------------~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNN--------------RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCS--------------SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCC--------------CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 3457 89887541 1123334699999999995432210 1124789999876653
No 94
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.87 E-value=0.71 Score=36.49 Aligned_cols=34 Identities=18% Similarity=0.530 Sum_probs=25.8
Q ss_pred CCCChhhHHHHHhhccc----CCCCCCCCcccccCccc
Q 018151 217 SCRHVFHAECLEQTTPK----TQKSDPSCPICLRLQEE 250 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k----~~~~dpsCPlCrk~~~~ 250 (360)
.|...||..||..-+.. ....+..|+.|......
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 38 ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 69999999999976652 23345899999887654
No 95
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=65.47 E-value=2.6 Score=32.64 Aligned_cols=35 Identities=23% Similarity=0.542 Sum_probs=25.1
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHh-hc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ-TT 231 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEq-Wl 231 (360)
+..|.||.+.+.. ..+..=+.|+|.|=..||+. +.
T Consensus 3 e~~C~~C~~~~~~--------------~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--------------DAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCC--------------BCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCC--------------CceEECCcCChHHhHHHCHHHhc
Confidence 4679999976431 11222389999999999998 53
No 96
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=64.95 E-value=3.4 Score=31.31 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=23.2
Q ss_pred CCCChhhHHHHHhhcccCCCC-CCCCcccccC
Q 018151 217 SCRHVFHAECLEQTTPKTQKS-DPSCPICLRL 247 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~-dpsCPlCrk~ 247 (360)
.|...||..||+.=+.+.... +..||.|...
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 588999999999655444333 5789999853
No 97
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=64.93 E-value=0.53 Score=38.52 Aligned_cols=34 Identities=26% Similarity=0.641 Sum_probs=25.9
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.|...||..||..=+......+..||.|...+.+
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 6999999999996555444445789999877654
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.40 E-value=1.5 Score=35.57 Aligned_cols=30 Identities=33% Similarity=0.638 Sum_probs=23.7
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCccccc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLR 246 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk 246 (360)
.|-..||..||+.-+.+....+..||.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 599999999998766655444678999975
No 99
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.10 E-value=4.7 Score=30.81 Aligned_cols=52 Identities=19% Similarity=0.429 Sum_probs=32.6
Q ss_pred ccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccC-CCCCCCCcccccCcc
Q 018151 184 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSDPSCPICLRLQE 249 (360)
Q Consensus 184 ~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~-~~~dpsCPlCrk~~~ 249 (360)
..| ||.+.... +..-|.--.|.--||..|+.--.... ......||.|+...+
T Consensus 13 ~~C-~C~~~~d~-------------~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPYNV-------------NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSCCS-------------SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCccCC-------------CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 446 99887631 11224444699999999996433221 123478999998764
No 100
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.95 E-value=1.3 Score=34.47 Aligned_cols=30 Identities=27% Similarity=0.592 Sum_probs=22.8
Q ss_pred CCCChhhHHHHHhhcccCCCC-CCCCccccc
Q 018151 217 SCRHVFHAECLEQTTPKTQKS-DPSCPICLR 246 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~-dpsCPlCrk 246 (360)
.|...||..||+.-+...... +..||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688999999999655444333 578999975
No 101
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.74 E-value=4.6 Score=30.91 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCCChhhHHHHHhhccc-----CCCCCCCCcccccCccc
Q 018151 217 SCRHVFHAECLEQTTPK-----TQKSDPSCPICLRLQEE 250 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k-----~~~~dpsCPlCrk~~~~ 250 (360)
.|..-||..|+.--... .......||.|+.....
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 78899999999643322 11234789999876554
No 102
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=61.61 E-value=0.64 Score=41.61 Aligned_cols=55 Identities=16% Similarity=0.386 Sum_probs=34.3
Q ss_pred CccccccchhhhccCCCcccccccCCCC--CCcEeeCCCChhhHHHHHhhcc---cC----CCCCCCCcccccCcc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDM--PVVGVLSCRHVFHAECLEQTTP---KT----QKSDPSCPICLRLQE 249 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~--~vVaVLPCGHVFHaeCLEqWl~---k~----~~~dpsCPlCrk~~~ 249 (360)
+..|+||.+.+... +. .-|.=-.|..-||..|+.---. .. ......||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~------------~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDD------------DYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTC------------CTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCc------------ccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 45799999988631 11 1233336889999999853210 00 001479999998765
No 103
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=58.34 E-value=2 Score=34.50 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=21.1
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCcccccC
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 247 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~ 247 (360)
.|.-.||..|+.--+... ..+..||.|+..
T Consensus 47 ~C~~w~H~~C~~~~~~~~-p~~w~C~~C~~~ 76 (98)
T 2lv9_A 47 KCSVWQHIDCMGIDRQHI-PDTYLCERCQPR 76 (98)
T ss_dssp TTCBEEETTTTTCCTTSC-CSSBCCTTTSSS
T ss_pred CCCCcCcCcCCCCCccCC-CCCEECCCCcCC
Confidence 689999999997533222 124789999743
No 104
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=57.38 E-value=1.7 Score=37.09 Aligned_cols=54 Identities=17% Similarity=0.506 Sum_probs=32.9
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhccc-CCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK-TQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k-~~~~dpsCPlCrk~~~ 249 (360)
....| ||.+.... +...+.-=.|.-.||..|+.--... .......||.|+..-.
T Consensus 7 ~~~~C-~C~~~~~~-------------~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 61 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE-------------SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED 61 (174)
T ss_dssp CCEET-TTTEECCT-------------TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred CCcEe-eCCCCCCC-------------CCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence 44568 99887531 1112333368999999999643221 1123578999997653
No 105
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=57.26 E-value=13 Score=30.56 Aligned_cols=60 Identities=20% Similarity=0.363 Sum_probs=43.0
Q ss_pred CCCCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 178 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 178 ~~~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
......+.|-||.+.+--. ..++ .-||--.|+--.-..|+|--..+.+ ..||-|+..|..
T Consensus 11 ~~~~~~qiCqiCGD~VG~~---------~~Ge-~FVAC~eC~FPvCrpCyEYErkeG~---q~CpqCktrYkr 70 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLT---------VEGD-LFVACNECGFPACRPCYEYERREGT---QNCPQCKTRYKR 70 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBC---------SSSS-BCCSCSSSCCCCCHHHHHHHHHTSC---SSCTTTCCCCCC
T ss_pred ccccCCCccccccCccccC---------CCCC-EEEeeeccCChhhHHHHHHHHhccC---ccccccCCcccc
Confidence 3345668999999997521 1233 2345557887778899998777764 699999999985
No 106
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=55.39 E-value=4.6 Score=30.85 Aligned_cols=52 Identities=23% Similarity=0.412 Sum_probs=32.4
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhh-cccCCCCCCCCcccccC
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT-TPKTQKSDPSCPICLRL 247 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqW-l~k~~~~dpsCPlCrk~ 247 (360)
.....|.||.+.-... +...+.==.|.-.||..||.-- +++. +..||.|...
T Consensus 14 ~~~~~C~vC~~~~s~~------------~~~ll~CD~C~~~~H~~Cl~~~~vP~g---~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQN------------SNVILFCDMCNLAVHQECYGVPYIPEG---QWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCS------------SSCEEECSSSCCEEEHHHHTCSSCCSS---CCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCC------------CCCEEECCCCCCccccccCCCCcCCCC---CcCCccCcCc
Confidence 4567899998763210 1111111268889999999853 3333 5889999754
No 107
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=55.37 E-value=6.7 Score=33.99 Aligned_cols=30 Identities=20% Similarity=0.544 Sum_probs=22.1
Q ss_pred CCCChhhHHHHHhhccc-------CCCCCCCCccccc
Q 018151 217 SCRHVFHAECLEQTTPK-------TQKSDPSCPICLR 246 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k-------~~~~dpsCPlCrk 246 (360)
.|--+||..||+.-+.. ....+..||+|..
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 68899999999965531 1223589999974
No 108
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=53.10 E-value=7.3 Score=36.20 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=20.6
Q ss_pred CCCChhhHHHHHhhcccCCCC-CCCCcccccC
Q 018151 217 SCRHVFHAECLEQTTPKTQKS-DPSCPICLRL 247 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~-dpsCPlCrk~ 247 (360)
.|...||..||+.=+...... +..||.|...
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 688999999999655544333 5789999753
No 109
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.99 E-value=3 Score=33.00 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=33.8
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhh-cccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT-TPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqW-l~k~~~~dpsCPlCrk~~~~ 250 (360)
....|.||.+.-... .+.+ +.=-.|.-.||..||.-- +++. +..||.|......
T Consensus 24 ~~~~C~vC~~~~s~~----~~~l--------l~CD~C~~~fH~~Cl~p~~vP~g---~W~C~~C~~~~~~ 78 (88)
T 2l43_A 24 EDAVCSICMDGESQN----SNVI--------LFCDMCNLAVHQECYGVPYIPEG---QWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCSSCCSSSSCS----EEEE--------EECSSSCCCCCHHHHTCSSCCSS---CCCCHHHHHHTTS
T ss_pred CCCcCCcCCCCCCCC----CCCE--------EECCCCCchhhcccCCCCccCCC---ceECccccCccch
Confidence 457899998763210 0001 111168889999999853 3433 5889999876654
No 110
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=49.29 E-value=4.2 Score=31.00 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=21.8
Q ss_pred CC-ChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 218 CR-HVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 218 CG-HVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
|. ..||..||. +.........||.|+....
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 66 689999998 4443334578999987654
No 111
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.50 E-value=2 Score=32.30 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=33.3
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
....| ||.+.... ....|.--.|.--||..|+.--..........||.|+....
T Consensus 15 ~~~~C-~C~~~~~~-------------g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 15 WKVDC-KCGTKDDD-------------GERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SEECC-TTCCCSCC-------------SSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred cceEe-eCCCccCC-------------CCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 34568 79887431 01123334688889999997543322234578999987544
No 112
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=47.78 E-value=9.2 Score=37.92 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=25.8
Q ss_pred CcEeeCCCCh--hhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 212 VVGVLSCRHV--FHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 212 vVaVLPCGHV--FHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
++.-..|.|+ |-++-+-++..+. ....||+|.+.+.
T Consensus 262 PvRg~~C~HlQCFDl~sfL~~~~~~--~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 262 PSKSINCKHLQCFDALWFLHSQLQI--PTWQCPVCQIDIA 299 (371)
T ss_dssp EEEETTCCSSCCEEHHHHHHHHHHS--CCCBCTTTCCBCC
T ss_pred cCcCCcCCCcceECHHHHHHHhhcC--CceeCCCCCcccC
Confidence 4777899998 7766655554332 3478999999885
No 113
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=47.47 E-value=10 Score=30.66 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCccccccchhhhccCCCcccccccCCC-CCCcEeeCCCChhhHHHHHhh---cccCCCCCCCCcccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGD-MPVVGVLSCRHVFHAECLEQT---TPKTQKSDPSCPICL 245 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD-~~vVaVLPCGHVFHaeCLEqW---l~k~~~~dpsCPlCr 245 (360)
....|.||+..=.+. + .++ ...+.=-.|+..||..||+-. .......+..||-|+
T Consensus 4 p~~~C~~C~~~~~~~------~---~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQN------R---EKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCC------T---TSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhC------c---CCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 346799998763211 0 011 122333479999999999631 111112246777775
No 114
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=45.90 E-value=3.7 Score=31.01 Aligned_cols=51 Identities=16% Similarity=0.420 Sum_probs=32.3
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccC
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 247 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~ 247 (360)
.+...| ||.+.... ..-|.=-.|.--||..|+.--.... .....||.|+..
T Consensus 17 ~~~~~C-iC~~~~~~--------------~~MIqCd~C~~WfH~~Cvgi~~~~~-~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFAG--------------RPMIECNECHTWIHLSCAKIRKSNV-PEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCTT--------------CCEEECTTTCCEEETTTTTCCTTSC-CSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCCC--------------CCEEECCCCCccccccccCcCcccC-CCcEECCCCCCC
Confidence 345668 99886541 1123334699999999997543221 235789999753
No 115
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=45.30 E-value=10 Score=37.36 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=26.7
Q ss_pred CcEeeCCCCh--hhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 212 VVGVLSCRHV--FHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 212 vVaVLPCGHV--FHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
+++-..|.|+ |-++=+-++..+. ....||+|.+.+.
T Consensus 228 P~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 228 PCRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAA 265 (360)
T ss_dssp EEEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCC
T ss_pred CCcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccC
Confidence 4777899998 7777666655443 3478999999986
No 116
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=44.25 E-value=1.5 Score=31.27 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=28.7
Q ss_pred cccccchhhhccCCCcccccccCCCCCCcEee-CCCChhhHHHHHhhcccCCCCCCCCcccc
Q 018151 185 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICL 245 (360)
Q Consensus 185 ~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL-PCGHVFHaeCLEqWl~k~~~~dpsCPlCr 245 (360)
.|.||.+++.. +..-|+-- .|.-=||..|+.--..........||.|+
T Consensus 4 ~cc~C~~p~~~-------------~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD-------------KVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT-------------TCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC-------------CCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 37888887642 11224444 68888999998653322111347899985
No 117
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=42.29 E-value=6.1 Score=32.83 Aligned_cols=32 Identities=25% Similarity=0.616 Sum_probs=26.6
Q ss_pred eeCC-CChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 215 VLSC-RHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 215 VLPC-GHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
++.| -|.+-..||..++...+ .||||.+.+-.
T Consensus 41 LV~C~dHYLCl~CLtlmL~~Sd----rCpIC~~pLPt 73 (99)
T 2ko5_A 41 LVECNNHYLCLNCLTLLLSVSN----RCPICKMPLPT 73 (99)
T ss_dssp EEECSSCEEEHHHHHHTCSSSS----EETTTTEECCC
T ss_pred eeeecchhhHHHHHHHHHhhcc----CCcccCCcCCc
Confidence 4454 58999999999998874 89999999864
No 118
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=41.89 E-value=3.2 Score=30.50 Aligned_cols=27 Identities=26% Similarity=0.673 Sum_probs=19.8
Q ss_pred CC-ChhhHHHHHhhcccCCCCCCCCccccc
Q 018151 218 CR-HVFHAECLEQTTPKTQKSDPSCPICLR 246 (360)
Q Consensus 218 CG-HVFHaeCLEqWl~k~~~~dpsCPlCrk 246 (360)
|. ..||..||. +......+..||.|.+
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 55 689999998 4443334588999975
No 119
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=39.02 E-value=1.1 Score=36.41 Aligned_cols=54 Identities=28% Similarity=0.627 Sum_probs=32.8
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEee-CCCChhhHHHHHhhccc------CCCCCCCCcccccCcc
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPK------TQKSDPSCPICLRLQE 249 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL-PCGHVFHaeCLEqWl~k------~~~~dpsCPlCrk~~~ 249 (360)
...|+||.+++.. +..-+.== .|.--||.+|+.--... .......||.|+....
T Consensus 3 ~~~C~iC~~p~~~-------------~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVND-------------DQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCT-------------TSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCC-------------CCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 3579999999752 11111111 68888999998533210 1112478999998654
No 120
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=38.15 E-value=4.2 Score=29.91 Aligned_cols=27 Identities=30% Similarity=0.762 Sum_probs=19.7
Q ss_pred CC-ChhhHHHHHhhcccCCCCCCCCccccc
Q 018151 218 CR-HVFHAECLEQTTPKTQKSDPSCPICLR 246 (360)
Q Consensus 218 CG-HVFHaeCLEqWl~k~~~~dpsCPlCrk 246 (360)
|. .-||..|+. +......+..||.|++
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 66 689999998 3333334578999975
No 121
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=35.69 E-value=9.9 Score=31.06 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=15.9
Q ss_pred CCCcccccCcccCC---CCcchhhhhcccC
Q 018151 239 PSCPICLRLQEENS---PDQQVFSRLKNSF 265 (360)
Q Consensus 239 psCPlCrk~~~~~~---~~q~~~~~~rn~~ 265 (360)
..||.|.-.+..+- .+-.-+|.|-|.|
T Consensus 52 FkCP~CgEEFyG~~Lp~~EaeKVFELLNdF 81 (95)
T 2k5c_A 52 FKCPVCGEEFYGKTLPRREAEKVFELLNDF 81 (95)
T ss_dssp EECTTTCCEEETTSSCTTTHHHHHHHHHSC
T ss_pred hcCCCccHHHhcccCChHHHHHHHHHHHHc
Confidence 46999999885432 1222355555543
No 122
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=35.22 E-value=5 Score=29.83 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=20.0
Q ss_pred CC-ChhhHHHHHhhcccCCCCCCCCcccccC
Q 018151 218 CR-HVFHAECLEQTTPKTQKSDPSCPICLRL 247 (360)
Q Consensus 218 CG-HVFHaeCLEqWl~k~~~~dpsCPlCrk~ 247 (360)
|. .-||..|+. +.........||.|++.
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 55 789999998 33333345789999764
No 123
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=34.26 E-value=18 Score=30.24 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=17.8
Q ss_pred eCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 216 LSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 216 LPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..||++| .+.. .+ ...||.|+....+
T Consensus 71 ~~CG~~F----~~~~-~k----PsrCP~CkSe~Ie 96 (105)
T 2gmg_A 71 RKCGFVF----KAEI-NI----PSRCPKCKSEWIE 96 (105)
T ss_dssp TTTCCBC----CCCS-SC----CSSCSSSCCCCBC
T ss_pred hhCcCee----cccC-CC----CCCCcCCCCCccC
Confidence 4799999 1111 11 2479999999875
No 124
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=34.01 E-value=9.9 Score=25.80 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=10.2
Q ss_pred CCCcccccCccc
Q 018151 239 PSCPICLRLQEE 250 (360)
Q Consensus 239 psCPlCrk~~~~ 250 (360)
..||+|++.+..
T Consensus 6 FiCP~C~~~l~s 17 (34)
T 3mjh_B 6 FICPQCMKSLGS 17 (34)
T ss_dssp EECTTTCCEESS
T ss_pred cCCcHHHHHcCC
Confidence 579999999874
No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=33.75 E-value=12 Score=30.82 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCCChhhHHHHHhhcccCCCCCCCCcccccCc
Q 018151 217 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 248 (360)
Q Consensus 217 PCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~ 248 (360)
.|--+||..||. +......+..||-|.-..
T Consensus 34 ~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 34 DCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp TCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 466899999998 444333456799776444
No 126
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.04 E-value=15 Score=26.70 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=29.1
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.....|..|.+.+.. .. .+..-+.+||.+|+ .|-.|.+.+..
T Consensus 7 ~~~~~C~~C~~~I~~--------------~~--~v~a~~~~~H~~CF------------~C~~C~~~L~~ 48 (76)
T 2cu8_A 7 GMASKCPKCDKTVYF--------------AE--KVSSLGKDWHKFCL------------KCERCSKTLTP 48 (76)
T ss_dssp CCCCBCTTTCCBCCT--------------TT--EEEETTEEEETTTC------------BCSSSCCBCCT
T ss_pred CCCCCCcCCCCEeEC--------------Ce--EEEECCeEeeCCCC------------CCCCCCCccCC
Confidence 345789999998762 11 23456889998873 57788887763
No 127
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=31.85 E-value=6.1 Score=25.51 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=19.0
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHH
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECL 227 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCL 227 (360)
...|+.|.+..... -.+..=|.+||..|+
T Consensus 3 ~~~C~~C~k~Vy~~----------------Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPT----------------EKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGG----------------GCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecc----------------eeEEECCeEecccCC
Confidence 35799999887521 113345788998884
No 128
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.92 E-value=22 Score=26.79 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=28.1
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|..|.+.+.. -.+..-+..||.+|+ .|-.|.+.+..
T Consensus 24 ~~~~C~~C~~~I~~-----------------~~v~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRG-----------------PFLVALGKSWHPEEF------------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCS-----------------CEEEETTEEECTTTC------------BCSSSCCBCSS
T ss_pred CCCCCccCCCEecc-----------------eEEEECCccccccCC------------ccCCCCCCCCC
Confidence 45679999998752 124456889998874 57788887763
No 129
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=29.97 E-value=19 Score=26.98 Aligned_cols=52 Identities=23% Similarity=0.551 Sum_probs=31.5
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEee-CCCChhhHHHHHhhccc------CCCCCCCCccccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPK------TQKSDPSCPICLR 246 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVL-PCGHVFHaeCLEqWl~k------~~~~dpsCPlCrk 246 (360)
....|++|.+++.. +..-|.-- .|.--||.+|+.--... .......||.|.+
T Consensus 7 ~~~~C~~C~~p~~~-------------~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVND-------------DQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCT-------------TSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCC-------------CCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 44679999999762 22234444 78889999998433211 1111367999864
No 130
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=26.75 E-value=31 Score=38.18 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=40.1
Q ss_pred CCCCccccccchhhhccCCCcccccccCCCCCCcEeeCCC-ChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 180 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 180 ~~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCG-HVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
..+...|+|-.+.+.+ ..++|.| ++|-..+|++|+.. +++||+=+..+..
T Consensus 888 iP~~F~cPIs~~lM~D-----------------PVilpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD-----------------PVILPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSS-----------------EEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhC-----------------CeEcCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCc
Confidence 3467889999888762 4478998 58999999999976 3699998888864
No 131
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=25.55 E-value=22 Score=30.25 Aligned_cols=30 Identities=20% Similarity=0.531 Sum_probs=21.3
Q ss_pred CCCChhhHHHHHhhc-----ccC--CCCCCCCccccc
Q 018151 217 SCRHVFHAECLEQTT-----PKT--QKSDPSCPICLR 246 (360)
Q Consensus 217 PCGHVFHaeCLEqWl-----~k~--~~~dpsCPlCrk 246 (360)
.|-.+||.+||..-+ .+. ...+..|++|..
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 588999999999642 121 233579999964
No 132
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=25.36 E-value=9.2 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=18.3
Q ss_pred ChhhHHHHHhhcccCCCCCCCCcc-cccC
Q 018151 220 HVFHAECLEQTTPKTQKSDPSCPI-CLRL 247 (360)
Q Consensus 220 HVFHaeCLEqWl~k~~~~dpsCPl-Crk~ 247 (360)
--||..||. +.........||. |.+.
T Consensus 50 eWfH~~CVg--l~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 50 EWFHYGCVG--LKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp SCEETTTSS--CSSCTTSCCCSSHHHHHH
T ss_pred ccCcCccCC--CCcCCCCCccCChhhcch
Confidence 689999997 3333334578999 9853
No 133
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.70 E-value=16 Score=27.35 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=28.1
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
.....|..|.+.+.. ...+ ..=+.+||.+|+ .|-.|.+.+..
T Consensus 13 ~~~~~C~~C~~~I~~--------------~e~v--~a~~~~wH~~CF------------~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYV--------------LERL--CVNGHFFHRSCF------------RCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCT--------------TTBC--CBTTBCCBTTTC------------BCSSSCCBCCT
T ss_pred CCCCCCcccCCCccc--------------ceEE--EECCCeeCCCcC------------EEcCCCCCcCC
Confidence 455789999998752 1112 245788998883 47778777754
No 134
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.62 E-value=19 Score=27.24 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=20.1
Q ss_pred ChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 220 HVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 220 HVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.-||..|+.- .........||.|.....
T Consensus 30 ~WfH~~Cvgl--~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 30 EWFHYGCVGL--TEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCEEHHHHTC--SSCCSSCCCCHHHHHHHH
T ss_pred cCCccccccc--CcCCCCCEECCCCCcccc
Confidence 6899999983 333334578999987654
No 135
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.99 E-value=47 Score=26.49 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=17.1
Q ss_pred CccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHH
Q 018151 183 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECL 227 (360)
Q Consensus 183 ~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCL 227 (360)
...|.-|.+.+.. ... +..-+..||.+|+
T Consensus 5 ~~~C~~C~~~I~~--------------~~~--~~a~~~~wH~~CF 33 (122)
T 1m3v_A 5 WKRCAGCGGKIAD--------------RFL--LYAMDSYWHSRCL 33 (122)
T ss_dssp CCCBSSSSSCCCS--------------SCC--EEETTEEECHHHH
T ss_pred CCCCcccCCEeCC--------------cEE--EEECCceeHhhCC
Confidence 3567788777652 111 2234777888775
No 136
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.52 E-value=34 Score=25.66 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=28.7
Q ss_pred CCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCccc
Q 018151 182 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 250 (360)
Q Consensus 182 d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~~ 250 (360)
....|..|.+.+.. .. +..-+.+||.+|+ .|-.|.+.+..
T Consensus 24 ~~~~C~~C~~~I~~---------------~~--~~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG---------------AV--VKARDKYRHPECF------------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS---------------CC--EESSSCEECTTTC------------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc---------------cE--EEECCceECccCC------------EecCCCCCCCC
Confidence 45679999998762 11 4457789998884 57788887764
No 137
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.63 E-value=21 Score=26.67 Aligned_cols=41 Identities=17% Similarity=0.496 Sum_probs=27.8
Q ss_pred CCCccccccchhhhccCCCcccccccCCCCCCcEeeCCCChhhHHHHHhhcccCCCCCCCCcccccCcc
Q 018151 181 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 249 (360)
Q Consensus 181 ~d~~~C~ICle~Lsq~sP~~s~~i~~~gD~~vVaVLPCGHVFHaeCLEqWl~k~~~~dpsCPlCrk~~~ 249 (360)
.....|.-|.+.+.. ... +..=+..||.+|+ .|-.|.+.+.
T Consensus 13 ~~~~~C~~C~~~I~~--------------~~~--v~a~~~~wH~~CF------------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKH--------------GQS--LLALDKQWHVSCF------------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSS--------------SCC--EEETTEEECTTTC------------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCC--------------CeE--EEECCcccccccC------------CcCcCCCCcC
Confidence 355789999998762 112 2345788998873 5778887775
No 138
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=20.53 E-value=66 Score=25.02 Aligned_cols=32 Identities=16% Similarity=0.457 Sum_probs=19.6
Q ss_pred CCCChhhHHHHH------hhccc-CCCCCCCCcccccCc
Q 018151 217 SCRHVFHAECLE------QTTPK-TQKSDPSCPICLRLQ 248 (360)
Q Consensus 217 PCGHVFHaeCLE------qWl~k-~~~~dpsCPlCrk~~ 248 (360)
.|+.-||..|+. +.+.+ .......||.|....
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 588889999962 11122 112357899997643
No 139
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=20.08 E-value=19 Score=30.31 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=23.6
Q ss_pred eeCCCChhhHHHHHhhcccCCC-CCCCCcccccC
Q 018151 215 VLSCRHVFHAECLEQTTPKTQK-SDPSCPICLRL 247 (360)
Q Consensus 215 VLPCGHVFHaeCLEqWl~k~~~-~dpsCPlCrk~ 247 (360)
...|-|+++..+++.|...... ....|+.|.+.
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CCCCcChhhccccccccccccCCCCCcCcccccc
Confidence 4689999999999887543211 12579999986
Done!