BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018152
         (360 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WLJ|A Chain A, Human Isg20
          Length = 189

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 10/171 (5%)

Query: 146 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 204
           A+DCEMV L      GL R  +V+ +  V  D+ ++PE  + DYR+ ++G+T   +VG T
Sbjct: 9   AMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT 68

Query: 205 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTS---LIFK--YVDEYR 257
              A  +  + +LL  G ++VGH L +D + LK D     + DTS   L+++   +D  R
Sbjct: 69  -PFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCR 126

Query: 258 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLL 308
           R SL  L + +L   I+     H+ ++DA A M+L       R    +P L
Sbjct: 127 RVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRL 177


>pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
 pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
          Length = 186

 Score = 36.2 bits (82), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 178 LVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLK 237
           L+KP + ++   SEITG+T  +++    S+ E+       L + +I+V H+ N D   L+
Sbjct: 51  LIKPSREISRKSSEITGITQ-EMLENKRSIEEVLPEFLGFLED-SIIVAHNANFDYRFLR 108

Query: 238 LDHPRVIDTSLIFKYVDEYRRPSLYNLCKSV-LGYEIRKKGTP----HNCLDDASAAMKL 292
           L   +V+       Y+D           +S  L   + K G      H  LDDA    ++
Sbjct: 109 LWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPFRHHRALDDARVTAQV 168

Query: 293 VLAIIE 298
            L  +E
Sbjct: 169 FLRFVE 174


>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
 pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-glutamate Gamma-semialdehyde
 pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
 pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'-Monophosphate
          Length = 1073

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 159 EGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 200
           +G+  L  +DR   V I+ELV+ E+ VA+    ITGL AD L
Sbjct: 450 DGVFNLTNIDRWFLVQIEELVRLEEKVAEV--GITGLNADFL 489


>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
          Length = 1073

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 159 EGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 200
           +G+  L  +DR   V I+ELV+ E+ VA+    ITGL AD L
Sbjct: 450 DGVFNLTNIDRWFLVQIEELVRLEEKVAEV--GITGLNADFL 489


>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
          Length = 1073

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 159 EGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 200
           +G+  L  +DR   V I+ELV+ E+ VA+    ITGL AD L
Sbjct: 450 DGVFNLTNIDRWFLVQIEELVRLEEKVAEV--GITGLNADFL 489


>pdb|3FF1|A Chain A, Structure Of Glucose 6-Phosphate Isomerase From
          Staphylococcus Aureus
 pdb|3FF1|B Chain B, Structure Of Glucose 6-Phosphate Isomerase From
          Staphylococcus Aureus
          Length = 446

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 9  EKKALVEIVKLIQKRRMEGTAGG-----WKDFLTSYDKKFGSSLSDPARRSKD 56
          E K   EIVK I K   EGT  G     W D    YDK+  S + + ++R K+
Sbjct: 22 ELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKE 74


>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
           (Tm1360) From Thermotoga Maritima In Complex With
           Mg(2+)- Bef (Wild Type)
          Length = 116

 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 25/36 (69%)

Query: 184 AVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS 219
           A + YRS+++   AD+ V  + +  E+++++KKLLS
Sbjct: 81  AYSHYRSDLSSWAADEYVVKSFNFDELKEKVKKLLS 116


>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
           Complex With Response Regulator Protein Trra (Tm1360)
 pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
           (Tm1360) From Thermotoga Maritima In Complex With
           Mg(2+)- Bef (Semet, L89m)
          Length = 116

 Score = 28.5 bits (62), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 184 AVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS 219
           A + YRS+ +   AD+ V  + +  E+++++KKLLS
Sbjct: 81  AYSHYRSDXSSWAADEYVVKSFNFDELKEKVKKLLS 116


>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
           Rptp Lar
 pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
           Rptp Lar
          Length = 575

 Score = 27.7 bits (60), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 185 VADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI 244
           + D    I  L A+D +  +     I    +    N  + V    N    V+  DH RVI
Sbjct: 2   ITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVI 61

Query: 245 DTS---------LIFKYVDEYRRPSLY 262
            TS         +   Y+D YR+ + Y
Sbjct: 62  LTSIDGVPGSDYINANYIDGYRKQNAY 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,193,621
Number of Sequences: 62578
Number of extensions: 401972
Number of successful extensions: 1194
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1189
Number of HSP's gapped (non-prelim): 13
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)