BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018152
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/357 (57%), Positives = 264/357 (73%), Gaps = 13/357 (3%)
Query: 1 MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSS 60
M+ KL T EKK LV++VKL+QKR +EG GGWK+FL YDKK GSSLSDPARRS D L +
Sbjct: 1 MEHKLATAEKKLLVDLVKLVQKRGLEGENGGWKEFLNVYDKKLGSSLSDPARRSNDVLVA 60
Query: 61 FLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMF 120
FL TF K++DL+ IA+V+Q NR+L+E+ K+ +PD E+PEQRLVRLT+ H YP Y F
Sbjct: 61 FLLTFKKKEDLQLIARVMQCGANRELIEKFKQETPDKETPEQRLVRLTITHDDYPGNYTF 120
Query: 121 PSSDEGWLVTKLG-KSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELV 179
PS E W VT+LG K SK + S M ++DCEMV CEDGS+ LVR+ VDR+LKV +D+ V
Sbjct: 121 PSYAEDWYVTELGKKKSKVIKSTRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFV 180
Query: 180 KPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLD 239
KP+K V DY+++ITG+TA+DL T S+A+IQK++++ LS GTILVGH L+NDL+VL++D
Sbjct: 181 KPDKPVIDYKTDITGVTAEDLERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRID 240
Query: 240 HPRVIDTSLIFKYVD--EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAII 297
H RVIDTS +F++VD + +RPSL NLCKSVLG E+R G HNC+ DA+AAMKLVLA +
Sbjct: 241 HARVIDTSYVFEFVDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAV 300
Query: 298 ERRVDN----------AVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTI 344
E+ A QE E +A+LFLH+IP VPSEELHGV+ G+FT+
Sbjct: 301 EKGAATLIQPTEEMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEELHGVLSGNFTL 357
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 314 ETERARLFLHRIPTKVPSEELHGVIPGDFTIEAK 347
E ++ +LFLH+IP VPS+ELHGV+ GDFT++ K
Sbjct: 465 EADKTKLFLHKIPHDVPSQELHGVLNGDFTLDVK 498
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 314 ETERARLFLHRIPTKVPSEELHGVIPGDFTIE 345
E ++ +L LH+IP VPS+EL VI G FT+E
Sbjct: 604 EADKTKLLLHKIPLNVPSQELKVVITGQFTLE 635
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/367 (53%), Positives = 259/367 (70%), Gaps = 14/367 (3%)
Query: 1 MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSS 60
M+ KL T EK+ L E+VKL+Q R + G G WK+FL YDK S SDP+RRS + L
Sbjct: 1 MELKLATAEKQVLDELVKLLQSRDLRGENGNWKEFLHVYDKN-ADSPSDPSRRSHEDLVQ 59
Query: 61 FLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMF 120
FL TF K++DL+ + + H N L+E LK+ S D+++PEQ LVRLT++HP Y L Y F
Sbjct: 60 FLTTFKKKEDLQLL----KCHANHLLIENLKQESQDEDTPEQMLVRLTVEHPSYSLDYSF 115
Query: 121 PSSDEGWLVTKLG-KSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELV 179
E W V+ +G K K M S M AVDCEMVLCEDG+EGLVR+ VVDR+LKV +DE V
Sbjct: 116 KPYSEDWFVSDVGMKMKKVMESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFV 175
Query: 180 KPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLD 239
KP K V DYR++ITG+TA+D+ + S+ +IQ+ ++ LS GTILVGHSLN DLEVLK+D
Sbjct: 176 KPNKPVVDYRTDITGITAEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKID 235
Query: 240 HPRVIDTSLIFKYVD--EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAII 297
HP+VIDT+L+FKY + + RRPSL NLCKS+LGYE+RK G PH+C+ DASAAMKL LA++
Sbjct: 236 HPKVIDTALVFKYPNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVV 295
Query: 298 ERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKVD-----YFL 352
E+RVD + +E + E E+A+LFLH+IP VPSEEL V+ G FT++ K Y+
Sbjct: 296 EKRVDTTIKPSKE-MLEVEKAKLFLHKIPNNVPSEELEQVLSGKFTLDVKQAKTQGRYYC 354
Query: 353 ILSFGHS 359
+ HS
Sbjct: 355 AFALFHS 361
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 343 bits (881), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 188/355 (52%), Positives = 250/355 (70%), Gaps = 12/355 (3%)
Query: 1 MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSS-LSDPARRSKDALS 59
M+ L T E LV++VK+ QK ++G G WK+FL YDK+ GSS LSDP++R KD L
Sbjct: 1 MEDVLATAEGVVLVKLVKVAQKLGLKGENGTWKEFLDFYDKQLGSSSLSDPSKRRKDDLV 60
Query: 60 SFLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYM 119
+FL T K++DL+ +AK ++ L+ D+ E+ KK S D E+ EQRLVR+TL H +YPL Y+
Sbjct: 61 AFLTTLKKKEDLQLLAKSLK--LDNDVFEKFKKKSLD-ETAEQRLVRMTLTHDEYPLDYL 117
Query: 120 FPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELV 179
FPS+ E W+ T LGK T M A+DCEMVLCEDGSE +VR+ VDR+LKV +DE V
Sbjct: 118 FPSNAEDWVRTGLGKKKMEPTKIEMIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFV 177
Query: 180 KPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLD 239
KP + V DYR+ ITGLTA DL T S+ +IQ+++ +S TILVG SLN+DL+VLK+D
Sbjct: 178 KPNQPVVDYRTFITGLTAQDLEKATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVD 237
Query: 240 HPRVIDTSLIFKYVDE-------YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
H RVIDTSL+FKY + +RPSL LCK +LGYE++K+G PHNC+ DA AAMKL
Sbjct: 238 HARVIDTSLVFKYNYDGTRRPLRLKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKL 297
Query: 293 VLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAK 347
VLAI++ + +VPL +E + E E+++L+LHRIP VP EEL+GV+ D E K
Sbjct: 298 VLAILDNGAETSVPLSKE-MLEAEKSKLYLHRIPCNVPYEELNGVVSRDIPHEVK 351
>sp|Q9SN09|SDN4_ARATH Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana
GN=SDN4 PE=3 SV=1
Length = 322
Score = 251 bits (640), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 192/292 (65%), Gaps = 31/292 (10%)
Query: 83 NRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMFPSSDEGWLVTKLG-KSSKTMTS 141
NR ++ + KK SP ++SPEQRLVRLT ++PQY + ++F S + W V+ +G K S M
Sbjct: 13 NRLMIAKFKKESPANDSPEQRLVRLTNENPQYNVDFLFHSYSKDWFVSDVGMKMSNVMIP 72
Query: 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 201
N M A+DCEMVLCEDG+EG+VR+ VDRNLKV +DE VKP K V DYR+ ITG+TA+D+
Sbjct: 73 NQMLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAEDVQ 132
Query: 202 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRRP 259
T SL +IQ++++ LS G IL+ DHP VIDTSL+FKY + + RRP
Sbjct: 133 KATLSLVDIQEKLRPFLSAGAILI-------------DHPIVIDTSLVFKYPNSRKLRRP 179
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERAR 319
SL LC SVLGYE++K G H+C+ DA+AAMKL LA+I++RVD + L + E E++R
Sbjct: 180 SLNTLCMSVLGYEVQKAGVSHHCVHDAAAAMKLALAVIKKRVDTTITLTK----EAEKSR 235
Query: 320 LFLHRIPTKVPSEELH-----GVIPGDFTIEAKVD------YFLILSFGHSV 360
LFLHRIP + SEEL P +FTI+ K Y ++ FG SV
Sbjct: 236 LFLHRIPHHLSSEELKKDLALKFFPKNFTIDVKPAKTQGGYYCAVVIFGSSV 287
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2
Length = 631
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 4/170 (2%)
Query: 126 GWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAV 185
GW+ + S + I+ A+DCEMV E+G E + R+ +VD +V DE VKPE V
Sbjct: 259 GWVASAGDFHSPPINPKIL-AIDCEMVRTENGLE-IARVTIVDMKSEVIYDEFVKPESPV 316
Query: 186 ADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVID 245
DY ++ +G+T + L VT L+++Q +KK + N T+L+GHSLN+DL LK HP +ID
Sbjct: 317 TDYVTQYSGITEEKLRNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHPHIID 376
Query: 246 TSLIFKYV-DEYRRPSLYNLCKSVLGYEIRKKGT-PHNCLDDASAAMKLV 293
T+ I+ + +PSL L L EI+K G H+ +DA A + L+
Sbjct: 377 TANIYNHTRGPPSKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLL 426
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2
SV=2
Length = 567
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
+ A+DCEM + ++G E L R+ +VD +V +D+LV P + DY + +G+TA + GV
Sbjct: 215 IVALDCEMCITKEGLE-LTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITAVMMEGV 273
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV-DEYRRPSLY 262
T +L +IQ+ KL+ TILVGHSL NDL LK+ H VIDT++++K+ + L
Sbjct: 274 TTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTAVLYKHPHGRSYKTKLR 333
Query: 263 NLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVP 306
L K L EI++ + H+ +DA AAM L L I+ D P
Sbjct: 334 ILAKKFLAREIQESESGHDSAEDAKAAMDLALLKIKHGPDFGSP 377
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%)
Query: 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 501 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 261
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F + Y+R SL
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKR-SL 618
Query: 262 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVD 302
NL L I+ HN +DASA ++LV+ + +R
Sbjct: 619 RNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVRQRAQ 659
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 4/161 (2%)
Query: 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 407 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 465
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 261
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F + Y+R SL
Sbjct: 466 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVLDTAVLFPHYLGFPYKR-SL 524
Query: 262 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVD 302
NL LG I+ HN +DA+A ++LV+ + +R
Sbjct: 525 RNLAADYLGQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQ 565
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 112/194 (57%), Gaps = 14/194 (7%)
Query: 101 EQRLVRLTLQHPQYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEG 160
EQ+LV YPL + D W+ T T + ++A+DCEM L E G
Sbjct: 191 EQQLVA-----NDYPLDSGDTNFDTDWVQT----VDFTHGGSHIFALDCEMCLSEQGLV- 240
Query: 161 LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL-VGVTCSLAEIQKRMKKLLS 219
L R+ +V+ + +V +ELVKP+ + DY + +G+T + L VG +L E+QK + K++S
Sbjct: 241 LTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEEKLTVGAKKTLREVQKDLLKIIS 300
Query: 220 NGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY-VDEYRRPSLYNLCKSVLGYEIRKKGT 278
IL+GHSL NDL+V+KL HP V+DT++I+ + + +PSL L ++ L I+
Sbjct: 301 RSDILIGHSLQNDLKVMKLKHPLVVDTAIIYHHKAGDPFKPSLKYLSETFLNKSIQ--NG 358
Query: 279 PHNCLDDASAAMKL 292
H+ ++DA A ++L
Sbjct: 359 EHDSVEDARACLEL 372
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 92/161 (57%), Gaps = 4/161 (2%)
Query: 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 409 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 467
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 261
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F + Y+R SL
Sbjct: 468 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKR-SL 526
Query: 262 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVD 302
NL L I+ HN +DA+A ++LV+ + +R
Sbjct: 527 RNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQ 567
>sp|Q4R9F7|REXON_MACFA Putative RNA exonuclease NEF-sp OS=Macaca fascicularis
GN=QtsA-10054 PE=2 SV=1
Length = 772
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 105/187 (56%), Gaps = 11/187 (5%)
Query: 113 QYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLK 172
+PL FP E +L+TK S ++ ++ +DCEM L G E L R+ +V
Sbjct: 201 HFPL-QGFPEC-ENFLLTKCNGS--IADNSPLFGLDCEMCLTSKGRE-LTRISLVAEGGC 255
Query: 173 VTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNND 232
+DELVKPE + DY + +G+T L VT L ++Q+++K LL +LVGHSL+ D
Sbjct: 256 CVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLD 315
Query: 233 LEVLKLDHPRVIDTSLIFKYVDEY-RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMK 291
L LK+ HP VIDTSL+ YV E RR L L K++LG +I+ P DA+ +
Sbjct: 316 LRALKMIHPYVIDTSLL--YVREQGRRFKLKFLAKAILGKDIQ---CPDRLGHDATEDAR 370
Query: 292 LVLAIIE 298
++L + +
Sbjct: 371 IILELAQ 377
>sp|Q2T9U5|REXON_BOVIN Putative RNA exonuclease NEF-sp OS=Bos taurus PE=2 SV=1
Length = 783
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 6/163 (3%)
Query: 134 KSSKTMTSNI-MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEI 192
K + ++T N ++ +DCEM L G E L R+ +V +DELVKP+ + DY +
Sbjct: 219 KCNGSVTDNSPLFGLDCEMCLTSKGRE-LTRISLVAEGGGCVMDELVKPDNKIVDYLTSF 277
Query: 193 TGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY 252
+G+T L VT L ++Q+R+K LL +LVGHSL+ DL LK+ HP VIDTSL+ Y
Sbjct: 278 SGITKKILNPVTTKLKDVQRRLKILLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLL--Y 335
Query: 253 VDEY-RRPSLYNLCKSVLGYEIR-KKGTPHNCLDDASAAMKLV 293
V E RR L L K++LG +I+ H+ +DA ++L
Sbjct: 336 VREQGRRFKLKFLAKAILGKDIQCPDRLGHDATEDARTTLELA 378
>sp|Q96IC2|REXON_HUMAN Putative RNA exonuclease NEF-sp OS=Homo sapiens GN=44M2.3 PE=2 SV=1
Length = 774
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 102/182 (56%), Gaps = 7/182 (3%)
Query: 113 QYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLK 172
+PL FP E +L+TK S ++ ++ +DCEM L G E L R+ +V
Sbjct: 201 HFPL-QGFPDC-ENFLLTKCNGS--IADNSPLFGLDCEMCLTSKGRE-LTRISLVAEGGC 255
Query: 173 VTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNND 232
+DELVKPE + DY + +G+T L VT L ++Q+++K LL +LVGHSL+ D
Sbjct: 256 CVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLD 315
Query: 233 LEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIR-KKGTPHNCLDDASAAMK 291
L LK+ HP VIDTSL++ ++ RR L L K +LG +I+ H+ +DA ++
Sbjct: 316 LRALKMIHPYVIDTSLLY-VREQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILE 374
Query: 292 LV 293
L
Sbjct: 375 LA 376
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 135 SSKTMTSNIMYAVDCEMVLCED-GSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEI 192
S+K N + A+DCEMV D GSE L R+ +V+ + D+ V+P++ V DYR+ +
Sbjct: 127 SAKKEPGNYL-AIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWV 185
Query: 193 TGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLIF 250
+G+ DL G S +++Q + L+ G +LVGH++ NDL+ L L HP+V+ DT+
Sbjct: 186 SGVRPKDLKGAP-SFSQVQGEVANLI-KGKVLVGHAIQNDLKALLLSHPKVLIRDTATFQ 243
Query: 251 KYVD--EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAM 290
D + + PSL L K VLG +I+ +G H+ ++DA A M
Sbjct: 244 PLRDLAKTKYPSLKKLAKLVLGIDIQLEGESHSSVEDARATM 285
>sp|A1A5R7|REXON_RAT Putative RNA exonuclease NEF-sp OS=Rattus norvegicus PE=2 SV=1
Length = 754
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Query: 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 200
S+ ++ +DCE+ L G E L R+ +V +DELVKP+ + DY + +G+T + L
Sbjct: 219 SSPLFGLDCEVCLTSMGKE-LTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEIL 277
Query: 201 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPS 260
VT L ++QK +++LL +LVGH L+ DL VLK+ HP VIDTSL++ + RR
Sbjct: 278 NPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLLY-IGKQGRRFK 336
Query: 261 LYNLCKSVLGYEIR-KKGTPHNCLDDASAAMKLV 293
L L K +LG +I+ H+ ++DA A++LV
Sbjct: 337 LTFLAKVILGKDIQCPNKLGHDGIEDARTALELV 370
>sp|Q7TT28|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1
Length = 1213
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
++A+DCEM G E L R+ VVD +++V D VKP+ V DY + +G+T DLV
Sbjct: 1052 VFALDCEMSYTTYGLE-LTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVDT 1110
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY--VDEYRRPSL 261
+ +L ++Q + + S TIL+GHSL +DL LK+ H V+DTS++F + Y+R SL
Sbjct: 1111 SITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLGLPYKR-SL 1169
Query: 262 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAII 297
NL L I+ H+ +DASA M LV+ I
Sbjct: 1170 RNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKI 1205
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 10/157 (6%)
Query: 146 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 245 ALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 304
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLI--FKYVDEYRRP 259
L +QK + ++L G ILVGH+L+NDL+VL LDHP ++ DT FK + RP
Sbjct: 305 E-ELEVVQKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRP 362
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI 296
SL L + +LG ++++ H + DA AAM+L + +
Sbjct: 363 SLRLLSEKILGLQVQQ--AEHCSIQDAQAAMRLYVMV 397
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 11/165 (6%)
Query: 133 GKSSKTMTSNIMYAVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRS 190
GK+ K + A+DCE V + DG E L R+ VV+ + +D V+P++ V D+R+
Sbjct: 102 GKAGKVGSVGKFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRT 161
Query: 191 EITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSL 248
++G+T + +L E Q+R+ +L N +L+GH L++DLE+L + HP+ + DTS+
Sbjct: 162 WVSGITPAHMK-QAVTLEEAQRRVAAMLKN-RVLIGHGLHHDLEMLMVSHPKAQIRDTSM 219
Query: 249 IFKYVDEY---RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAM 290
+ ++Y + PSL L + VL +I +G H+ ++DA AA+
Sbjct: 220 HGPFREKYGAGKTPSLKKLAREVLNIDI--QGKEHSSVEDARAAL 262
>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2
Length = 432
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 18/175 (10%)
Query: 146 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 255 ALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 314
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLI--FKYVDEYRRP 259
++K + ++L G ILVGH+L+NDL+VL LDHP ++ DT F+ + RP
Sbjct: 315 E-EFEVVKKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKSGRP 372
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI--------IERRVDNAVP 306
SL L + +LG IR + H + DA AAM+L + + RR A P
Sbjct: 373 SLKRLSEKILG--IRVQQAEHCSIQDAQAAMRLYVMVKREWESSTANRRAPAATP 425
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 10/153 (6%)
Query: 146 AVDCEMVLCEDGSE--GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV G L R+ +VD + D VKP++ V ++R+ ++G++ +
Sbjct: 135 AIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMR-F 193
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 259
E+Q + KLL G ILVGH L +DLE L L HP + DT+ FK R+P
Sbjct: 194 ARDFEEVQAEIDKLL-RGRILVGHDLKHDLEALILSHPGKDIRDTAKFSGFKKYANGRKP 252
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
SL L + +LG EI+ G H+ ++DA A M L
Sbjct: 253 SLRVLAQQLLGVEIQ--GGEHSSIEDARATMLL 283
>sp|Q6CE69|REXO4_YARLI RNA exonuclease 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX4 PE=3 SV=1
Length = 291
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 10/153 (6%)
Query: 146 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCE V + +G+ L R+ +V+ V +DE VKP + V D+R+ ++G+T +V
Sbjct: 135 ALDCEFVGVGPNGARSILARVSIVNYYGHVLMDEYVKPIERVTDWRTWVSGVTPA-MVAN 193
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS--LIFKYVDEYRRP 259
S +E Q+R+K+LL NG L+GH+L NDL VL LDHPR + DT FK V + P
Sbjct: 194 GISFSEAQERVKRLL-NGRTLIGHALINDLAVLGLDHPRADIRDTQKPQYFKTVCGCKTP 252
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
SL ++ K + I++ H+ + DA AAM L
Sbjct: 253 SLKHVMKECVDLNIQQ--GEHSSVIDAQAAMLL 283
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 15/154 (9%)
Query: 146 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 201
A+DCE V G EG L R+ +V+ + V +D VKP + V D+R+ ++G+T D +
Sbjct: 97 AMDCEFVGV--GPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHMK 154
Query: 202 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDEY--- 256
S + Q+++ +L + ILVGH++ +DLE L L HP +VIDT+ + +Y
Sbjct: 155 N-AVSFKQAQQQLSDILKD-KILVGHAVKHDLEALMLSHPKSKVIDTARHLPFRQKYAKG 212
Query: 257 RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAM 290
+ PSL L K +L +I+ H+ ++DA A M
Sbjct: 213 KSPSLKKLAKEILNMDIQ--SGQHSSVEDARATM 244
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 129 VTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADY 188
+KL + + T A+DCEMV D L R+ +V+ + V D V+P++ V D+
Sbjct: 78 ASKLTRKTNLETLGKYIAMDCEMVGVADDMSVLARVSIVNYHGHVVYDTYVRPKEKVTDW 137
Query: 189 RSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDT 246
R+ ++G+ + + S ++Q + K+L N +LVGH+++NDL+VL L HPR + DT
Sbjct: 138 RTWVSGVKSFHMRDAP-SFEKVQAEVAKILDN-RVLVGHAVHNDLKVLLLSHPRRMIRDT 195
Query: 247 SLI--FKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
S ++ + + R P L L + +LG +I+ H+ + DA A M+L
Sbjct: 196 SRFSGYRKLAKGRTPGLKKLAEVILGRDIQ--SGQHSSVQDAQATMEL 241
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 90/153 (58%), Gaps = 10/153 (6%)
Query: 146 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + DG E L R+ +V+ K D+ V+P + V DYR+ ++G+ DD+
Sbjct: 230 AMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDIKNG 289
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 259
+ ++Q + ++L G LVGH+++NDL++L LDHP+ + DT FK + RP
Sbjct: 290 E-AFKDVQAEVAEIL-RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKSGRP 347
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
SL LC+ +L +++ H + DA AAM+L
Sbjct: 348 SLKLLCEKILNVKVQTGE--HCSVQDAQAAMRL 378
>sp|Q8N1G1|REXO1_HUMAN RNA exonuclease 1 homolog OS=Homo sapiens GN=REXO1 PE=1 SV=3
Length = 1221
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
Query: 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 199
T +YA+DCEM G E L R+ VVD ++ V D VKP+ + DY + +G+T D
Sbjct: 1056 THPGIYALDCEMSYTTYGLE-LTRVTVVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEAD 1114
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY--VDEYR 257
L + +L ++Q + + S TIL+GHSL +DL LK+ H V+DTS++F + Y+
Sbjct: 1115 LADTSVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYK 1174
Query: 258 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 294
R SL NL L I+ H+ +DA A M LV+
Sbjct: 1175 R-SLRNLMADYLRQIIQDNVDGHSSSEDAGACMHLVI 1210
>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2
Length = 421
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 12/154 (7%)
Query: 146 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + DG E L R+ +V+ K D+ VKP + V DYR+ ++G+ +D V
Sbjct: 236 AMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPED-VKK 294
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 259
+QK + ++L G LVGH+++NDL++L LDHP+ + DT FK + RP
Sbjct: 295 GEPFKVVQKEVSEIL-RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKSGRP 353
Query: 260 SLYNLCKSVLGYEIRKKGTPHNC-LDDASAAMKL 292
SL LC+ +L +++ T +C + DA AAM+L
Sbjct: 354 SLKLLCEKILNVKVQ---TGEHCSVQDAQAAMRL 384
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 10/153 (6%)
Query: 146 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCE V + +G+E L R+ +V+ D+ VKP + V D+R+ ++G+T +
Sbjct: 101 AMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHM-NE 159
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLI--FKYVDEYRRP 259
S E Q KLL G ILVGH++++DL+ L L HP R+ DTS F+ + + P
Sbjct: 160 AISFQEAQNETSKLL-EGRILVGHAIHHDLDALFLSHPKSRIRDTSQYKPFRSISMGKTP 218
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
SL L L +I+ G+ H+ ++DA A M L
Sbjct: 219 SLKKLSSHFLKIDIQ--GSAHSSVEDARATMLL 249
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 10/153 (6%)
Query: 146 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + +G E L R+ +V+ + V +D V+P + V DYR+ I+G+ DL+G
Sbjct: 134 AIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLGA 193
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI--FKYVDEYRRP 259
E+ K++ LL + IL+GH+++NDL+VL L HP + DT + + + +RP
Sbjct: 194 P-QFDEVNKQVANLLHD-KILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKRP 251
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
L L + +LG +I+ H+ + DA AM L
Sbjct: 252 GLKKLSELLLGVQIQT--GAHSSVVDARVAMAL 282
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 10/153 (6%)
Query: 146 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + +G E L R+ +V+ + V +D V+P + V DYR+ I+G+ DL+G
Sbjct: 134 AIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLGA 193
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI--FKYVDEYRRP 259
E+ K++ LL + IL+GH+++NDL+VL L HP + DT + + + +RP
Sbjct: 194 P-QFDEVNKQVANLLHD-KILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKRP 251
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
L L + +LG +I+ H+ + DA AM L
Sbjct: 252 GLKKLSELLLGVQIQT--GAHSSVVDARVAMAL 282
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 11/152 (7%)
Query: 146 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCE V + +G E L R+ +V+ V +DE VKP + V ++R+ ++G+ + +
Sbjct: 123 AMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKNA 182
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLIFKYVDEY---RR 258
+ E QK+ +L G ILVGH+L +DLE L L HP+ + DTS + Y +
Sbjct: 183 -ITFKEAQKKTADILE-GRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKT 240
Query: 259 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAM 290
PSL L + VL I++ H+ ++DA A M
Sbjct: 241 PSLKKLTREVLKISIQE--GEHSSVEDARATM 270
>sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX3 PE=3 SV=1
Length = 757
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 11/156 (7%)
Query: 146 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGL--------TA 197
AVDCEM+ G E L R+ +D + K T+D +V+P + DY + +G+ T
Sbjct: 599 AVDCEMLYTSLGME-LCRVTCIDYHGKKTLDRVVRPTGRILDYNTRFSGISDINEPIITE 657
Query: 198 DDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYR 257
G + S E + + KL++ TILVGH L NDL ++L H R+IDTS+++ +
Sbjct: 658 SGEKGDSISFEEAHRLILKLINKQTILVGHGLENDLIAMRLIHDRIIDTSILYPDFNPRY 717
Query: 258 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLV 293
+ +L L L I+ H+ ++DA AA+ +V
Sbjct: 718 KTALKTLALKYLKRTIQT--GEHDSMEDALAALDVV 751
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 16/171 (9%)
Query: 133 GKSSKTMTSNIMYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADY 188
GK+S + S + A+DCEMV G G L R +V + V D+ ++PE +ADY
Sbjct: 100 GKASGPLPSKCV-AIDCEMV--GTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADY 156
Query: 189 RSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDT 246
R+ +G+T + QK + KLL G ++VGH+L+ND + LK HPR DT
Sbjct: 157 RTRWSGITRQHMRKAV-PFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDT 214
Query: 247 SLIFKYVDE-----YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
+ + ++ E R SL +L +L +I+ H+ ++DA+ AM+L
Sbjct: 215 TYVPNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMEL 265
>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4
PE=3 SV=1
Length = 406
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 134 KSSKTMTSNIMYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYR 189
+++K+ T ++DCEMV G G L R +VD + D V+P V D+R
Sbjct: 206 QATKSNTLGKYLSIDCEMVGT--GPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWR 263
Query: 190 SEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS 247
+ ++G++ + S +Q + LL G ILVGH + +DLEVL +HP + DT+
Sbjct: 264 THVSGISKRHMASAR-SFESVQATVAALL-KGRILVGHDVKHDLEVLGFEHPHRDIRDTA 321
Query: 248 LI--FKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
F+ +PSL L K VLG EI + H+ ++DA AM L
Sbjct: 322 KYSGFRKYGHGPKPSLRVLAKEVLGIEIHQGQ--HSSVEDARVAMLL 366
>sp|Q66UW5|ISG20_PIG Interferon-stimulated gene 20 kDa protein OS=Sus scrofa GN=Isg20
PE=1 SV=2
Length = 181
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 10/171 (5%)
Query: 146 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 204
A+DCEMV + GL R +V+ + V D+ ++PE + DYR+ ++G+T +VG T
Sbjct: 9 AMDCEMVGMGPRRESGLARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHMVGAT 68
Query: 205 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS---LIFK--YVDEYR 257
A + + +LL G ++VGH L +D + LK D R + DTS L+++ +D R
Sbjct: 69 -PFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMNRYTIYDTSTDMLLWREAKLDHCR 126
Query: 258 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLL 308
R SL LC+ +L I+ H+ ++DA A M+L R +P L
Sbjct: 127 RVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMELYQISQRIRARRGLPRL 177
>sp|Q6CJB5|REXO3_KLULA RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX3 PE=3 SV=1
Length = 478
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 12/152 (7%)
Query: 146 AVDCEMVLCEDGSEGLVRLCVVD-RNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 204
A+DCEM G E ++R+ +VD + +V D+++KP + D S+ +G+ D T
Sbjct: 322 ALDCEMAFTSKGYE-MIRITIVDFWSSEVVYDKVIKPLGEIIDLNSKFSGIHHIDDTAPT 380
Query: 205 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIF---KYVDEYRRPSL 261
AE +++ +IL+GH L+NDL V+++ H +VIDT++++ KY + SL
Sbjct: 381 IHEAEKCYICPSMINQNSILIGHGLDNDLRVMRIVHDKVIDTAVLYPAGKY-----KSSL 435
Query: 262 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLV 293
NL +L I +G H+ +DA AAM ++
Sbjct: 436 KNLSFEILSRRI--QGGEHDSSEDAIAAMDVI 465
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 133 GKSSKTMTSNIMYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADY 188
GK+S + S + A+DCEMV G G L R +V + V D+ ++PE + DY
Sbjct: 100 GKASGPLPSKCV-AIDCEMV--GTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIVDY 156
Query: 189 RSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDT 246
R+ +G+T + QK + KLL G ++VGH+L+ND + LK HPR DT
Sbjct: 157 RTRWSGITRQHMCKAI-PFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDT 214
Query: 247 SLIFKYVDE-----YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
+ + ++ E R SL +L +L +I+ H+ ++DA+ AM+L
Sbjct: 215 TYVPNFLSEPSLHIRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMEL 265
>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1
PE=2 SV=2
Length = 1647
Score = 75.9 bits (185), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 200
S +YA+DCEMV G L RL +VD +D VKP V D +E +GLT + +
Sbjct: 1475 STRVYALDCEMVYTIAGP-ALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQI 1533
Query: 201 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPS 260
+L +++ K ++ TIL+GHSL +DL+ +++ H VIDT+++F+ + + +
Sbjct: 1534 NSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVHKNVIDTAILFRSTRD-TKVA 1592
Query: 261 LYNLCKSVLGYEIR---KKGTPHNCLDDASAAMKLVL 294
L L +L I+ + H+ ++DA + L+
Sbjct: 1593 LKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDLIF 1629
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 11/154 (7%)
Query: 146 AVDCEMVLC---EDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVG 202
A+DCEMV D L R+ +V+ N + D V+P++ + D+R+ ++G++ +
Sbjct: 118 AMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMAE 177
Query: 203 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSL--IFKYVDEYRR 258
SL ++QK + ++L +G ILVGH+++NDL+ L L HP+ + DTS ++ +
Sbjct: 178 AR-SLEQVQKDVAEIL-DGRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRKIAGGGS 235
Query: 259 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
P L L LG I+ H+ ++DA A M L
Sbjct: 236 PRLKILASEFLGLNIQDGA--HSSVEDAKATMLL 267
>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX4 PE=3 SV=1
Length = 294
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 11/154 (7%)
Query: 146 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
++DCE V + DG + L R+ +V+ V +D V+P++ V D+R+ ++G+ +
Sbjct: 121 SMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMANA 180
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEY---RR 258
+ + QK++ +L G ILVGHS+++DL L L HPR + DTS + +Y +
Sbjct: 181 -VTQEDCQKQVSNVLK-GRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKT 238
Query: 259 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
PSL L K +L +I+ H+ ++DA A M L
Sbjct: 239 PSLKKLTKEILQLDIQ--DGEHSSIEDARATMLL 270
>sp|Q5A3Q0|REXO4_CANAL RNA exonuclease 4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX4 PE=3 SV=1
Length = 285
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 94/170 (55%), Gaps = 19/170 (11%)
Query: 146 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTA----DD 199
A+DCE V + +DG E L R+ +++ V +D V+P++ V D+R+ ++G+ + D
Sbjct: 118 AIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQERVTDWRTWVSGIQSYHMQDA 177
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDE 255
+ T L ++ L N ILVGH++NNDL++L L HP+ + DT F+ +
Sbjct: 178 IDFKTAQLKTME------LINNKILVGHAVNNDLDILFLSHPKSMIRDTCKFPKFREIAG 231
Query: 256 YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 305
+ PSL L K + +I+ H+ ++DA A M L+ + +R ++ ++
Sbjct: 232 GKSPSLKKLIKHFIQVDIQIGQ--HSSVEDARATM-LLFRLFKREIEQSM 278
>sp|Q96AZ6|ISG20_HUMAN Interferon-stimulated gene 20 kDa protein OS=Homo sapiens GN=ISG20
PE=1 SV=2
Length = 181
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 10/171 (5%)
Query: 146 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 204
A+DCEMV L GL R +V+ + V D+ ++PE + DYR+ ++G+T +VG T
Sbjct: 9 AMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT 68
Query: 205 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTS---LIFK--YVDEYR 257
A + + +LL G ++VGH L +D + LK D + DTS L+++ +D R
Sbjct: 69 -PFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCR 126
Query: 258 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLL 308
R SL L + +L I+ H+ ++DA A M+L R +P L
Sbjct: 127 RVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRL 177
>sp|Q9P7H2|REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex3 PE=3 SV=1
Length = 540
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 12/154 (7%)
Query: 146 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTC 205
A+DCE+ +G E L RL VV + + +D +KP+ + + +G+ +
Sbjct: 384 ALDCELCYTTNGME-LARLTVVAKE-SIIMDVFIKPKGKILSLNTRFSGIHDAKELESGI 441
Query: 206 SLAEIQKRMKKL-LSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRP----S 260
++ ++ ++K+L ++ TIL+GH L NDL ++L H RVIDT+L+F + R P S
Sbjct: 442 TMDQMYIKIKELGMNKNTILIGHGLENDLNAMRLIHKRVIDTALLFTHA---RGPPFRYS 498
Query: 261 LYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 294
L L K LG I+ + H+ +DA +A++LV
Sbjct: 499 LKYLTKKYLGTTIQT--STHDSEEDAVSALQLVF 530
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 144 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 199
M A+DCEMV G +G L R +V+ N V DE + P + DYR+ +G+
Sbjct: 179 MVAIDCEMV--GTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQH 236
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLIFKYVDEYR 257
+V T + ++ K+L+ G I+VGH+++ND + L+ HP+ + DTS I +
Sbjct: 237 MVNAT-PFKIARGQILKILT-GKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKAD 294
Query: 258 RP-----SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
P SL +L K +L +I+ + H+ ++DA A M+L
Sbjct: 295 CPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 15/160 (9%)
Query: 144 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 199
M A+DCEMV G +G L R +V+ + V DE + P + DYR+ +G+
Sbjct: 175 MVAIDCEMVGT--GPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQH 232
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 254
+V T + ++ K+L+ G I+VGH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 233 MVNAT-PFKIARNQILKILA-GKIVVGHAIHNDFKALQYIHPKSLTRDTSHIPLLNRKAD 290
Query: 255 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
E SL +L K +L +I+ + H+ ++DA A M+L
Sbjct: 291 CPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMEL 330
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 15/160 (9%)
Query: 144 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 199
M A+DCEMV G +G L R +V+ N V DE ++P + DYR+ +G+
Sbjct: 195 MVAIDCEMV--GTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCH 252
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 254
+V T + ++ K+LS G ++VGH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 253 MVNAT-PFKTARSQILKILS-GKVVVGHAIHNDYKALQYFHPKSLTRDTSQIPLLNRKAD 310
Query: 255 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
E SL +L K +L +I+ + H+ ++DA A ++L
Sbjct: 311 CPENVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLEL 350
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 15/160 (9%)
Query: 144 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 199
M A+DCEMV G +G L R +V+ N V DE V P + +YR+ +G+
Sbjct: 194 MVAIDCEMV--GTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCH 251
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 254
+V T + ++ K+LS G +++GH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 252 MVNAT-PFKTARSQILKILS-GKVVIGHAIHNDYKALQYFHPKSLTRDTSRIPLLNRKAD 309
Query: 255 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
E SL +L K +L +I+ T H+ ++DA A M+L
Sbjct: 310 CPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMEL 349
>sp|Q6FIU7|REXO3_CANGA RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1
Length = 398
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 13/168 (7%)
Query: 146 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTI-DELVKPEKAVADYRSEITGLTADDLVGVT 204
A+DCEM G E +VRL +VD T+ DE+++P V D ++ +G+ +D++
Sbjct: 241 ALDCEMGFTTMGYE-MVRLTIVDFFTSKTLYDEIIRPIGEVIDLNTQFSGVREEDILYAK 299
Query: 205 CSLAEIQKRMKK-LLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYN 263
++ ++ +++ +IL+GH L NDL V++L H R++DT++++ V ++ SL N
Sbjct: 300 DYEDVMEDVLRADMINRNSILIGHGLENDLNVMRLFHTRILDTAIMYS-VGRFKN-SLKN 357
Query: 264 LCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQED 311
L +L +I+ H+ DA AAM ++ + N + + Q D
Sbjct: 358 LSFEILSRKIQL--GEHDSSQDAIAAMDII------KAKNGISITQTD 397
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 17/159 (10%)
Query: 146 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 200
A+DCEMV G +G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 111 AIDCEMV--GTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 168
Query: 201 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDE--- 255
+ +A QK + KLL G ++VGH+L+ND + LK HPR DT+ + + +
Sbjct: 169 KAIPFQVA--QKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLSQPSS 225
Query: 256 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
R SL +L ++L +I+ H+ ++DA AM+L
Sbjct: 226 LIRTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMEL 264
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 17/159 (10%)
Query: 146 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 200
A+DCEMV G +G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 107 AIDCEMVGT--GPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 164
Query: 201 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDE--- 255
+ +A QK + KLL G ++VGH+L+ND + LK HP ++ DT+ + + +
Sbjct: 165 KAIPFQVA--QKEILKLL-KGKVVVGHALHNDFQALKYVHPGSQIRDTTYVPNLLSQPSS 221
Query: 256 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
R SL +L ++L +I+ H+ ++DA AM+L
Sbjct: 222 LTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMEL 260
>sp|Q5AL29|REXO3_CANAL RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX3 PE=3 SV=1
Length = 404
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 92/180 (51%), Gaps = 13/180 (7%)
Query: 128 LVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDR-NLKVTIDELVKPEKAVA 186
+L ++ T + + + +DCEM G E L+R+ +D K +D +KP +
Sbjct: 225 FTKELFTTTSTKSKSRVLGIDCEMGFTTKGFE-LMRITAIDYFTSKTVLDIFIKPIGEIV 283
Query: 187 DYRSEITGLT--ADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI 244
D+ + +G+ DD + S + +++ +++ + TIL+GH L ND+ ++L H +I
Sbjct: 284 DFNTRYSGIHELTDDFL----SWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIHENII 339
Query: 245 DTSLIFKY---VDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 301
DTS++F RR SL +L L I+ H+ +D+ AA+ +V +++++
Sbjct: 340 DTSILFPNKWKTGPTRRWSLKDLAFEFLSRRIQ--TGEHDSCEDSIAAIDIVKYFVKKQL 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,975,035
Number of Sequences: 539616
Number of extensions: 5269486
Number of successful extensions: 14768
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 14615
Number of HSP's gapped (non-prelim): 145
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)