Query 018152
Match_columns 360
No_of_seqs 274 out of 1386
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wlj_A Interferon stimulated g 100.0 6.8E-33 2.3E-37 249.7 16.0 157 141-299 4-168 (189)
2 2p1j_A POLIII, DNA polymerase 100.0 5.3E-30 1.8E-34 230.0 15.7 156 140-301 10-177 (186)
3 2gui_A DNA polymerase III epsi 100.0 4.5E-29 1.5E-33 224.5 16.2 154 142-299 9-184 (194)
4 1w0h_A 3'-5' exonuclease ERI1; 100.0 4.5E-28 1.5E-32 219.1 13.2 158 141-303 9-198 (204)
5 3mxm_B Three prime repair exon 99.9 4.6E-28 1.6E-32 226.9 9.8 154 141-299 11-214 (242)
6 1y97_A Three prime repair exon 99.9 4E-27 1.4E-31 218.2 13.8 155 140-299 8-209 (238)
7 3u3y_B Three prime repair exon 99.9 4.7E-27 1.6E-31 228.2 11.1 154 141-299 11-214 (314)
8 2f96_A Ribonuclease T; RNAse, 99.9 3.8E-26 1.3E-30 210.4 14.2 155 140-299 27-212 (224)
9 2igi_A Oligoribonuclease; RNAs 99.9 3.9E-26 1.3E-30 203.0 13.2 146 141-300 4-177 (180)
10 1zbh_A 3'-5' exonuclease ERI1; 99.9 6.3E-26 2.1E-30 218.5 15.5 157 142-302 78-265 (299)
11 2xri_A ERI1 exoribonuclease 3; 99.9 3.4E-26 1.1E-30 211.3 12.3 159 142-305 31-219 (224)
12 2gbz_A Oligoribonuclease; ORN, 99.9 9.4E-26 3.2E-30 203.9 11.4 144 140-300 7-181 (194)
13 3cg7_A CRN-4, cell death-relat 99.9 7.6E-26 2.6E-30 219.1 9.8 157 141-302 18-211 (308)
14 3v9w_A Ribonuclease T; DEDD nu 99.9 4.5E-25 1.6E-29 204.4 13.5 156 140-300 35-221 (235)
15 3tr8_A Oligoribonuclease; tran 99.9 3.9E-25 1.3E-29 200.0 11.8 148 140-301 7-182 (186)
16 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 3.1E-25 1.1E-29 218.4 11.8 158 141-302 127-315 (349)
17 2qxf_A Exodeoxyribonuclease I; 99.9 7.3E-24 2.5E-28 216.5 13.0 158 139-300 6-201 (482)
18 2kfn_A Klenow fragment of DNA 99.0 6.3E-09 2.1E-13 108.9 15.4 140 143-299 27-192 (605)
19 4hec_A Putative uncharacterize 98.9 1.8E-08 6.1E-13 91.1 13.1 150 141-298 21-180 (190)
20 1x9m_A DNA polymerase; DNA plo 98.8 3.7E-09 1.3E-13 112.4 7.0 133 144-301 1-184 (698)
21 4dfk_A DNA polymerase I, therm 98.3 7.1E-07 2.4E-11 92.3 7.0 118 143-300 11-128 (540)
22 3saf_A Exosome component 10; e 98.1 2.5E-05 8.4E-10 78.7 12.9 131 141-299 128-276 (428)
23 1qht_A Protein (DNA polymerase 97.9 2.5E-05 8.5E-10 84.0 9.5 141 141-297 134-327 (775)
24 1vk0_A Hypothetical protein; h 97.7 0.00015 5.2E-09 66.0 9.8 84 214-297 100-204 (206)
25 1noy_A Protein (DNA polymerase 97.7 0.00069 2.3E-08 66.9 14.5 151 141-296 105-335 (388)
26 4gmj_B CCR4-NOT transcription 97.6 0.00079 2.7E-08 64.2 13.9 157 142-302 34-247 (285)
27 2e6m_A Werner syndrome ATP-dep 97.6 0.00038 1.3E-08 62.3 11.1 87 213-299 87-194 (208)
28 1yt3_A Ribonuclease D, RNAse D 97.5 0.0012 4.1E-08 64.8 13.6 130 142-299 22-169 (375)
29 3pv8_A DNA polymerase I; DNA p 97.4 0.00023 8E-09 74.3 7.9 129 143-299 30-180 (592)
30 2hbj_A Exosome complex exonucl 97.2 0.0034 1.2E-07 62.6 12.6 130 142-299 106-253 (410)
31 3iay_A DNA polymerase delta ca 97.1 0.0024 8.1E-08 69.9 12.0 144 140-296 247-465 (919)
32 2d5r_A CCR4-NOT transcription 97.0 0.017 5.9E-07 54.0 15.0 158 142-303 24-238 (252)
33 1s5j_A DNA polymerase I; repli 96.8 0.0099 3.4E-07 64.4 13.4 147 141-293 189-386 (847)
34 1uoc_A POP2; hydrolase, DEDD n 96.5 0.033 1.1E-06 53.1 13.5 159 139-300 35-265 (289)
35 2p51_A SPCC18.06C protein; DED 96.5 0.062 2.1E-06 52.2 15.3 159 139-301 42-257 (333)
36 3cym_A Uncharacterized protein 96.5 0.026 8.9E-07 56.7 13.2 131 143-299 39-186 (440)
37 3qex_A DNA polymerase, GP43; d 96.4 0.055 1.9E-06 59.0 15.7 153 142-295 108-337 (903)
38 2gv9_A DNA polymerase; polymer 96.3 0.026 9E-07 63.3 13.2 155 141-296 319-550 (1193)
39 3k59_A POL II, DNA polymerase 96.0 0.072 2.4E-06 57.3 13.8 140 139-296 150-349 (786)
40 2a1r_A Poly(A)-specific ribonu 95.8 0.027 9.4E-07 56.4 9.2 97 199-299 263-396 (430)
41 3d45_A Poly(A)-specific ribonu 95.7 0.017 5.9E-07 59.0 7.5 89 206-298 264-390 (507)
42 2py5_A DNA polymerase; protein 85.4 1.9 6.5E-05 44.5 8.1 66 142-237 6-71 (575)
43 3q7c_A Nucleoprotein; deddh ex 70.1 3.3 0.00011 37.6 3.7 147 140-302 55-220 (243)
44 3mwp_A Nucleoprotein; structur 60.2 6.1 0.00021 39.6 3.7 146 140-301 389-553 (577)
45 3ikm_A DNA polymerase subunit 53.2 2.6 8.8E-05 46.7 -0.3 30 220-249 193-228 (1172)
46 1bgx_T TAQ DNA polymerase; DNA 37.6 43 0.0015 36.1 6.2 77 212-299 340-419 (832)
47 2l08_A Regulator of nonsense t 31.7 31 0.0011 27.3 3.0 22 319-340 11-32 (97)
48 2fc8_A NCL protein; structure 31.4 31 0.0011 25.8 2.9 40 319-358 17-63 (102)
49 2a1r_A Poly(A)-specific ribonu 26.3 29 0.001 34.3 2.4 14 142-155 22-35 (430)
50 3d45_A Poly(A)-specific ribonu 23.3 32 0.0011 34.8 2.0 15 141-155 23-37 (507)
No 1
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=6.8e-33 Score=249.72 Aligned_cols=157 Identities=32% Similarity=0.459 Sum_probs=136.4
Q ss_pred CCcEEEEEEeccCCCCCc-ccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhh
Q 018152 141 SNIMYAVDCEMVLCEDGS-EGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS 219 (360)
Q Consensus 141 ~~~~ValD~Ettgl~~g~-~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~ 219 (360)
..++|+|||||||+++.. .+|++|++|+.+|+++|++||+|..+|+++++++||||++||+++| ++.+|+++|.+++
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~-~~~~v~~~~~~~l- 81 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT-PFAVARLEILQLL- 81 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCE-EHHHHHHHHHHHH-
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCC-CHHHHHHHHHHHH-
Confidence 457999999999998765 4789999999999989999999999999999999999999999999 9999999999999
Q ss_pred CCCEEEEEcchhhHHHHcccCCC--ccchHHHhh--H--hCC-CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHH
Q 018152 220 NGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFK--Y--VDE-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292 (360)
Q Consensus 220 ~g~iLVGHnl~fDl~~L~~~~~~--viDT~~l~~--~--~~~-~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL 292 (360)
++++|||||+.||++||+..+++ ++||+.+++ + ..+ ..+++|+.||+.++|++++.++.+|+|++||++|++|
T Consensus 82 ~~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l 161 (189)
T 1wlj_A 82 KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL 161 (189)
T ss_dssp TTSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHH
Confidence 89999999999999999999886 799998754 2 223 4789999999777899987422389999999999999
Q ss_pred HHHHHHh
Q 018152 293 VLAIIER 299 (360)
Q Consensus 293 ~~~~l~~ 299 (360)
|+++++.
T Consensus 162 ~~~l~~~ 168 (189)
T 1wlj_A 162 YQISQRI 168 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 2
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.97 E-value=5.3e-30 Score=230.04 Aligned_cols=156 Identities=25% Similarity=0.323 Sum_probs=136.3
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEc-CCcEE--EEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHH
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDR-NLKVT--IDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKK 216 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~-~g~~~--~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~ 216 (360)
...++|+|||||||+++..++|++|++|.. +|+++ |+.||+|..+|+++++++||||++||+++| ++.+|+++|.+
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~-~~~~v~~~~~~ 88 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKR-SIEEVLPEFLG 88 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCC-BHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCC-CHHHHHHHHHH
Confidence 456899999999999987778999999985 67765 899999999999999999999999999999 99999999999
Q ss_pred HhhCCCEEEEEcchhhHHHHccc---------CCCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCCCChHHHHH
Q 018152 217 LLSNGTILVGHSLNNDLEVLKLD---------HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDAS 287 (360)
Q Consensus 217 ~l~~g~iLVGHnl~fDl~~L~~~---------~~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~ 287 (360)
++ ++.+|||||+.||++||+.. ..+++||..+++...+..+++|+.|| .++|++.. .+|+|++||+
T Consensus 89 ~l-~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~-~~~gi~~~---~~H~Al~Da~ 163 (186)
T 2p1j_A 89 FL-EDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVV-EKLGLGPF---RHHRALDDAR 163 (186)
T ss_dssp HS-SSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHH-HHTTCCST---TCCHHHHHHH
T ss_pred HH-CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHH-HHcCCCCC---CCcCHHHHHH
Confidence 99 89999999999999999863 23589999999887666789999999 56788864 3899999999
Q ss_pred HHHHHHHHHHHhcc
Q 018152 288 AAMKLVLAIIERRV 301 (360)
Q Consensus 288 at~eL~~~~l~~g~ 301 (360)
+|++||+++++.+.
T Consensus 164 ~t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 164 VTAQVFLRFVEMMK 177 (186)
T ss_dssp HHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998886554
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.96 E-value=4.5e-29 Score=224.50 Aligned_cols=154 Identities=20% Similarity=0.276 Sum_probs=133.9
Q ss_pred CcEEEEEEeccCCCC-----CcccEEEEEEEEc-CCcE---EEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHH
Q 018152 142 NIMYAVDCEMVLCED-----GSEGLVRLCVVDR-NLKV---TIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQK 212 (360)
Q Consensus 142 ~~~ValD~Ettgl~~-----g~~~I~~VsvVd~-~g~~---~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~ 212 (360)
.++|+|||||||+++ ..++|++|++|.. +|.+ .|++||+|..+|+++++++||||++||+++| ++.+|++
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~-~~~~v~~ 87 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKP-TFAEVAD 87 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSC-CHHHHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCC-CHHHHHH
Confidence 579999999999998 3468999999986 4554 3899999999999999999999999999999 9999999
Q ss_pred HHHHHhhCCCEEEEEcchhhHHHHccc-------C------CCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCC
Q 018152 213 RMKKLLSNGTILVGHSLNNDLEVLKLD-------H------PRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTP 279 (360)
Q Consensus 213 ~l~~~l~~g~iLVGHnl~fDl~~L~~~-------~------~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~ 279 (360)
+|.+++ ++++|||||+.||+.||+.. . .+++||..+++...+..+++|..|| .++|++... +.+
T Consensus 88 ~~~~~l-~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~-~~~gi~~~~-~~~ 164 (194)
T 2gui_A 88 EFMDYI-RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALC-ARYEIDNSK-RTL 164 (194)
T ss_dssp HHHHHH-TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHH-HHTTCCCTT-CSS
T ss_pred HHHHHH-CCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHH-HHcCcCCCC-CCC
Confidence 999999 89999999999999999863 1 2479999999988875678999999 567888652 138
Q ss_pred CChHHHHHHHHHHHHHHHHh
Q 018152 280 HNCLDDASAAMKLVLAIIER 299 (360)
Q Consensus 280 H~AleDA~at~eL~~~~l~~ 299 (360)
|+|++||++|++||++++++
T Consensus 165 H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 165 HGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp CCHHHHHHHHHHHHHHHTC-
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 99999999999999887754
No 4
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=4.5e-28 Score=219.12 Aligned_cols=158 Identities=18% Similarity=0.300 Sum_probs=134.6
Q ss_pred CCcEEEEEEeccCCCC----CcccEEEEEEEEc---CCcEE--EEEeecCCC--cccccccccCCCCHHhhcCCCCCHHH
Q 018152 141 SNIMYAVDCEMVLCED----GSEGLVRLCVVDR---NLKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAE 209 (360)
Q Consensus 141 ~~~~ValD~Ettgl~~----g~~~I~~VsvVd~---~g~~~--~d~lV~P~~--~I~d~~t~i~GIT~e~L~~ap~~l~e 209 (360)
...+|+||+||||+++ ..++|++|++|.. +|+++ |++||+|.. +|+++++++||||++||+++| ++.+
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~-~~~~ 87 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQ 87 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCC-CHHH
Confidence 4689999999999986 4468999997754 68776 999999998 999999999999999999999 9999
Q ss_pred HHHHHHHHhhCCC-------EEEEEcchhhHH-HHccc-------CC----CccchHHHhhHhCC--CCCCCHHHHHHHH
Q 018152 210 IQKRMKKLLSNGT-------ILVGHSLNNDLE-VLKLD-------HP----RVIDTSLIFKYVDE--YRRPSLYNLCKSV 268 (360)
Q Consensus 210 V~~~l~~~l~~g~-------iLVGHnl~fDl~-~L~~~-------~~----~viDT~~l~~~~~~--~~~~sL~~L~~~~ 268 (360)
|+++|.+|+ ++. ++||||+.||++ ||+.. .+ +++||..+++...+ ..+++|..|| .+
T Consensus 88 v~~~~~~~l-~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~-~~ 165 (204)
T 1w0h_A 88 VLKKVIDWM-KLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EK 165 (204)
T ss_dssp HHHHHHHHH-HHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH-HH
T ss_pred HHHHHHHHH-HhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHH-HH
Confidence 999999999 444 599999999997 99753 23 47999999987765 2458999999 56
Q ss_pred hCCccCCCCCCCChHHHHHHHHHHHHHHHHhcccC
Q 018152 269 LGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDN 303 (360)
Q Consensus 269 Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g~~~ 303 (360)
+|++.. +.+|+|++||++|++||+++++++...
T Consensus 166 ~gi~~~--~~~H~Al~Da~~ta~l~~~l~~~~~~~ 198 (204)
T 1w0h_A 166 LGMDYD--GRPHCGLDDSKNIARIAVRMLQDGCEL 198 (204)
T ss_dssp TTCCCC--SCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCCCC--CCccCcHHHHHHHHHHHHHHHHCCCee
Confidence 798875 247999999999999999999877543
No 5
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.95 E-value=4.6e-28 Score=226.93 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=131.5
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcC-C-------------------cE--EEEEeecCCCcccccccccCCCCHH
Q 018152 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRN-L-------------------KV--TIDELVKPEKAVADYRSEITGLTAD 198 (360)
Q Consensus 141 ~~~~ValD~Ettgl~~g~~~I~~VsvVd~~-g-------------------~~--~~d~lV~P~~~I~d~~t~i~GIT~e 198 (360)
-.++|+|||||||+++..++|++|++|..+ | ++ .|++||+|+.+|+++++++||||++
T Consensus 11 ~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~~ 90 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (242)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCHH
T ss_pred cceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCHH
Confidence 457999999999999888899999999752 2 22 5899999999999999999999999
Q ss_pred hhcCC--CCCHH-HHHHHHHHHhhCC----CEEEEEcc-hhhHHHHccc-------CC----CccchHHHhhHhC-----
Q 018152 199 DLVGV--TCSLA-EIQKRMKKLLSNG----TILVGHSL-NNDLEVLKLD-------HP----RVIDTSLIFKYVD----- 254 (360)
Q Consensus 199 ~L~~a--p~~l~-eV~~~l~~~l~~g----~iLVGHnl-~fDl~~L~~~-------~~----~viDT~~l~~~~~----- 254 (360)
||.++ | ++. +|+++|.+|+ ++ ++|||||+ .||++||+.. .+ .++||+.+++.+.
T Consensus 91 ~l~~~g~p-~~~~ev~~~~~~fl-~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p 168 (242)
T 3mxm_B 91 ELEVQGRQ-RFDDNLAILLRAFL-QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSP 168 (242)
T ss_dssp HHHHTTCC-CSCHHHHHHHHHHH-HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC
T ss_pred HHHhcCCC-chhHHHHHHHHHHH-hcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCc
Confidence 99999 7 896 9999999999 67 89999995 9999999864 11 3699999887543
Q ss_pred ---C-CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHh
Q 018152 255 ---E-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 299 (360)
Q Consensus 255 ---~-~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~ 299 (360)
+ ..+++|..||++++|++.. .+|+|++||++|++||+++.+.
T Consensus 169 ~~~~~~~~~~L~~l~~~~~gi~~~---~~H~Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 169 SGNGSRKSYSLGSIYTRLYWQAPT---DSHTAEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp ------CCCSHHHHHHHHHSSCCS---STTSHHHHHHHHHHHHTSSHHH
T ss_pred cccCCCCCcCHHHHHHHHhCCCCC---CCcChHHHHHHHHHHHHHHHHH
Confidence 2 4789999999888899875 3899999999999999876653
No 6
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.94 E-value=4e-27 Score=218.16 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=128.3
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcC-----------------CcE--EEEEeecCCCcccccccccCCCCHHhh
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRN-----------------LKV--TIDELVKPEKAVADYRSEITGLTADDL 200 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~~-----------------g~~--~~d~lV~P~~~I~d~~t~i~GIT~e~L 200 (360)
...++|+|||||||+++..++|++|++|..+ |++ .|+.||+|..+|+++++++||||++||
T Consensus 8 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l 87 (238)
T 1y97_A 8 RAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGL 87 (238)
T ss_dssp CCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHH
T ss_pred ccCeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHHH
Confidence 3468999999999999877789999999753 233 499999999999999999999999999
Q ss_pred --cCCCCCH-HHHHHHHHHHhhCC----CEEEEEcc-hhhHHHHccc-------C---CCccchHHHhhHhC--------
Q 018152 201 --VGVTCSL-AEIQKRMKKLLSNG----TILVGHSL-NNDLEVLKLD-------H---PRVIDTSLIFKYVD-------- 254 (360)
Q Consensus 201 --~~ap~~l-~eV~~~l~~~l~~g----~iLVGHnl-~fDl~~L~~~-------~---~~viDT~~l~~~~~-------- 254 (360)
.++| ++ ++|.+.|.+|+ .+ .+|||||+ .||+.||+.. . .+++||..+++...
T Consensus 88 ~~~~~p-~f~~~v~~~l~~fl-~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~ 165 (238)
T 1y97_A 88 ARCRKA-GFDGAVVRTLQAFL-SRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTR 165 (238)
T ss_dssp HHTTCC-CSCHHHHHHHHHHH-TTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-----
T ss_pred hhcCCC-ccHHHHHHHHHHHH-HhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCcccc
Confidence 5788 88 59999999999 44 89999999 9999999864 1 23799999988875
Q ss_pred -C-CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHh
Q 018152 255 -E-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 299 (360)
Q Consensus 255 -~-~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~ 299 (360)
+ ..+++|..||++++|++.. .+|+|++||++|++||+++.+.
T Consensus 166 ~p~~~~~~L~~l~~~~~gi~~~---~~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 166 ARGRQGYSLGSLFHRYFRAEPS---AAHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp -----CCSHHHHHHHHHSSCCC------CHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCHHHHHHHHhCCCCc---cCccHHHHHHHHHHHHHHHHHH
Confidence 4 4789999999767898864 3899999999999999987754
No 7
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.94 E-value=4.7e-27 Score=228.15 Aligned_cols=154 Identities=17% Similarity=0.189 Sum_probs=130.6
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcC-C---------------------cEEEEEeecCCCcccccccccCCCCHH
Q 018152 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRN-L---------------------KVTIDELVKPEKAVADYRSEITGLTAD 198 (360)
Q Consensus 141 ~~~~ValD~Ettgl~~g~~~I~~VsvVd~~-g---------------------~~~~d~lV~P~~~I~d~~t~i~GIT~e 198 (360)
-.++|+||+||||+++..++|++|++|..+ + ...|+++|+|+.+|++.++++||||++
T Consensus 11 ~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e 90 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (314)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHH
T ss_pred cCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHH
Confidence 357999999999999888899999999752 1 135899999999999999999999999
Q ss_pred hhcCC--CCCH-HHHHHHHHHHhhCC----CEEEEEc-chhhHHHHcccC-------C----CccchHHHhhH----hCC
Q 018152 199 DLVGV--TCSL-AEIQKRMKKLLSNG----TILVGHS-LNNDLEVLKLDH-------P----RVIDTSLIFKY----VDE 255 (360)
Q Consensus 199 ~L~~a--p~~l-~eV~~~l~~~l~~g----~iLVGHn-l~fDl~~L~~~~-------~----~viDT~~l~~~----~~~ 255 (360)
||+++ | +| ++|+++|.+|+ ++ ++||||| +.||++||+... + .++||+.+++. ..+
T Consensus 91 ~l~~aG~P-~f~~ev~~~l~~fL-~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P 168 (314)
T 3u3y_B 91 ELEVQGRQ-RFDDNLAILLRAFL-QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSP 168 (314)
T ss_dssp HHHHTTCC-BSCHHHHHHHHHHH-HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC--
T ss_pred HHHhCCCC-CcHHHHHHHHHHHH-hcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCc
Confidence 99999 7 89 79999999999 67 8999999 999999998741 1 27899986662 222
Q ss_pred -----CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHh
Q 018152 256 -----YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 299 (360)
Q Consensus 256 -----~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~ 299 (360)
..+++|..||++++|++.. .+|+|++||++|++||+++.+.
T Consensus 169 ~~~~~~~~~~L~~L~~~l~gi~~~---~aHrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 169 SGNGSRKSYSLGSIYTRLYWQAPT---DSHTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp -----CCCCSHHHHHHHHHSSCCS---CSSSHHHHHHHHHHHHHSSHHH
T ss_pred cccccCCCCCHHHHHHHhcCCCCC---CCCCHHHHHHHHHHHHHHHHHH
Confidence 3789999999776899875 3899999999999999977654
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.93 E-value=3.8e-26 Score=210.39 Aligned_cols=155 Identities=20% Similarity=0.240 Sum_probs=132.2
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEc----CCcE----EEEEeecC--CCcccccccccCCCCHH-hhcCCCCCHH
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDR----NLKV----TIDELVKP--EKAVADYRSEITGLTAD-DLVGVTCSLA 208 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~----~g~~----~~d~lV~P--~~~I~d~~t~i~GIT~e-~L~~ap~~l~ 208 (360)
...++|+||+||||+++..++|++|++|.. +|++ .|++||+| +.+|+++++++||||++ |+++++ ++.
T Consensus 27 ~~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~-~~~ 105 (224)
T 2f96_A 27 RGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAV-QEE 105 (224)
T ss_dssp TTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCB-CHH
T ss_pred cCCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCC-CHH
Confidence 456899999999999988788999999975 5763 48999999 67999999999999997 589998 999
Q ss_pred HHHHHHHHHhh--------CCCEEEEEcchhhHHHHccc-----C---C----CccchHHHhhHhCCCCCCCHHHHHHHH
Q 018152 209 EIQKRMKKLLS--------NGTILVGHSLNNDLEVLKLD-----H---P----RVIDTSLIFKYVDEYRRPSLYNLCKSV 268 (360)
Q Consensus 209 eV~~~l~~~l~--------~g~iLVGHnl~fDl~~L~~~-----~---~----~viDT~~l~~~~~~~~~~sL~~L~~~~ 268 (360)
+|+++|.+++. ++.+|||||+.||++||+.. . + +++||..+++...+ .++|..|| .+
T Consensus 106 ~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~--~~~L~~l~-~~ 182 (224)
T 2f96_A 106 AALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG--QTVLAKAC-QA 182 (224)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHH-HH
T ss_pred HHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC--CCCHHHHH-HH
Confidence 99999999984 47999999999999999853 1 1 37999999998765 46999999 56
Q ss_pred hCCccCCCCCCCChHHHHHHHHHHHHHHHHh
Q 018152 269 LGYEIRKKGTPHNCLDDASAAMKLVLAIIER 299 (360)
Q Consensus 269 Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~ 299 (360)
+|+++.. ..+|+|++||++|++||++++++
T Consensus 183 ~gi~~~~-~~~H~Al~Da~~ta~l~~~l~~~ 212 (224)
T 2f96_A 183 AGMEFDN-REAHSARYDTEKTAELFCGIVNR 212 (224)
T ss_dssp TTCCCCT-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCC-CCCCChHHHHHHHHHHHHHHHHH
Confidence 7988642 24899999999999999988865
No 9
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.93 E-value=3.9e-26 Score=202.99 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=117.0
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEc--CCcEE---EEEeecCCCcccccc-------cccCCCCHHhhcCCCCCHH
Q 018152 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDR--NLKVT---IDELVKPEKAVADYR-------SEITGLTADDLVGVTCSLA 208 (360)
Q Consensus 141 ~~~~ValD~Ettgl~~g~~~I~~VsvVd~--~g~~~---~d~lV~P~~~I~d~~-------t~i~GIT~e~L~~ap~~l~ 208 (360)
..++|+|||||||+++..++|++|++|.. +|.++ |++||+|..+|++++ +.+||||++|++++| +++
T Consensus 4 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~-~~~ 82 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTM-GDR 82 (180)
T ss_dssp GGCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCC-CHH
T ss_pred CCcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCC-CHH
Confidence 35799999999999988788999999854 45554 899999999887654 667999999999999 999
Q ss_pred HHHHHHHHHhhC-----CCEEEEEcchhhHHHHcccC--------CCccc--hHH-HhhHhCCCCCCCHHHHHHHHhCCc
Q 018152 209 EIQKRMKKLLSN-----GTILVGHSLNNDLEVLKLDH--------PRVID--TSL-IFKYVDEYRRPSLYNLCKSVLGYE 272 (360)
Q Consensus 209 eV~~~l~~~l~~-----g~iLVGHnl~fDl~~L~~~~--------~~viD--T~~-l~~~~~~~~~~sL~~L~~~~Lg~~ 272 (360)
+|+++|.+|+.+ .++|||||+.||++||+..+ .+.+| |.. ++++..+. + + .|++
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~----~---~---~~i~ 152 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPE----I---L---DGFT 152 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGG----G---G---GGSC
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChH----h---h---hCCC
Confidence 999999999943 37999999999999999754 34688 663 66654431 1 1 1443
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 018152 273 IRKKGTPHNCLDDASAAMKLVLAIIERR 300 (360)
Q Consensus 273 iq~~~~~H~AleDA~at~eL~~~~l~~g 300 (360)
. ..+|+|++||++|++||+++++.-
T Consensus 153 ~---~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 153 K---QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp C---CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred C---cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 2 248999999999999999888653
No 10
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.93 E-value=6.3e-26 Score=218.46 Aligned_cols=157 Identities=18% Similarity=0.317 Sum_probs=133.3
Q ss_pred CcEEEEEEeccCCC----CCcccEEEEEEEEc---CCcEE--EEEeecCCC--cccccccccCCCCHHhhcCCCCCHHHH
Q 018152 142 NIMYAVDCEMVLCE----DGSEGLVRLCVVDR---NLKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEI 210 (360)
Q Consensus 142 ~~~ValD~Ettgl~----~g~~~I~~VsvVd~---~g~~~--~d~lV~P~~--~I~d~~t~i~GIT~e~L~~ap~~l~eV 210 (360)
..+|+|||||||++ +..++|++|++|.. +|+++ |++||+|.. +|+++++++||||++||+++| ++.+|
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap-~~~ev 156 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQV 156 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CHHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCC-CHHHH
Confidence 57999999999997 34568999999975 46665 999999998 999999999999999999999 99999
Q ss_pred HHHHHHHhhCC------CEEEEEcchhhHH-HHccc-------CC----CccchHHHhhHhCCCC--CCCHHHHHHHHhC
Q 018152 211 QKRMKKLLSNG------TILVGHSLNNDLE-VLKLD-------HP----RVIDTSLIFKYVDEYR--RPSLYNLCKSVLG 270 (360)
Q Consensus 211 ~~~l~~~l~~g------~iLVGHnl~fDl~-~L~~~-------~~----~viDT~~l~~~~~~~~--~~sL~~L~~~~Lg 270 (360)
+++|.+|+.+. .++||||+.||+. ||+.. .+ +++||..+|+...+.. .++|..|| .++|
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~-~~~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH-HHTT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHH-HHcC
Confidence 99999999433 4999999999999 99763 23 4799999988765522 48999999 5679
Q ss_pred CccCCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 018152 271 YEIRKKGTPHNCLDDASAAMKLVLAIIERRVD 302 (360)
Q Consensus 271 ~~iq~~~~~H~AleDA~at~eL~~~~l~~g~~ 302 (360)
++.. +.+|+|++||++|++||+++++.+..
T Consensus 236 i~~~--g~~H~Al~DA~ata~l~~~l~~~~~~ 265 (299)
T 1zbh_A 236 MDYD--GRPNCGLDDSKNIARIAVRMLQDGCE 265 (299)
T ss_dssp CCCC--SCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCC--CCCCChHHHHHHHHHHHHHHHHhCCc
Confidence 8865 24799999999999999999987654
No 11
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.93 E-value=3.4e-26 Score=211.27 Aligned_cols=159 Identities=16% Similarity=0.275 Sum_probs=129.9
Q ss_pred CcEEEEEEeccCCCCCcc--cEEEEEEEEc---CCcEE--EEEeecCCC--cccccccccCCCCHHhhcCCCCCHHHHHH
Q 018152 142 NIMYAVDCEMVLCEDGSE--GLVRLCVVDR---NLKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEIQK 212 (360)
Q Consensus 142 ~~~ValD~Ettgl~~g~~--~I~~VsvVd~---~g~~~--~d~lV~P~~--~I~d~~t~i~GIT~e~L~~ap~~l~eV~~ 212 (360)
..+|+||+||||+++..+ +|++|++|.. .|++. |+.||+|.. +|+++++++||||++||+++| ++.+|++
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~-~~~~v~~ 109 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLE 109 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCC-CHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCC-CHHHHHH
Confidence 579999999999998754 7999999864 24554 999999997 899999999999999999999 9999999
Q ss_pred HHHHHhhCCCEEEEEcc--------hhhHHH-Hccc-------CC----CccchHHHhhHhCC-CCCCCHHHHHHHHhCC
Q 018152 213 RMKKLLSNGTILVGHSL--------NNDLEV-LKLD-------HP----RVIDTSLIFKYVDE-YRRPSLYNLCKSVLGY 271 (360)
Q Consensus 213 ~l~~~l~~g~iLVGHnl--------~fDl~~-L~~~-------~~----~viDT~~l~~~~~~-~~~~sL~~L~~~~Lg~ 271 (360)
+|.+++ ++.++||||+ .||++| |+.. .+ +.+|+...++...+ ...++|..|| .++|+
T Consensus 110 ~f~~~l-~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~-~~~gi 187 (224)
T 2xri_A 110 RVDEWM-AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMN-KGLSL 187 (224)
T ss_dssp HHHHHH-HHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHH-HHTTC
T ss_pred HHHHHH-hhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHH-HHcCC
Confidence 999999 7899999999 999997 6432 22 47895444433222 3458999999 57788
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHHHhcccCCC
Q 018152 272 EIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 305 (360)
Q Consensus 272 ~iq~~~~~H~AleDA~at~eL~~~~l~~g~~~~~ 305 (360)
+.. +.+|+|++||++|++||++++++|....+
T Consensus 188 ~~~--~~~H~Al~DA~~ta~l~~~l~~~g~~~~i 219 (224)
T 2xri_A 188 QHI--GRPHSGIDDCKNIANIMKTLAYRGFIFKQ 219 (224)
T ss_dssp CCC--SCTTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCC--CCCcChHHHHHHHHHHHHHHHHcCCEEee
Confidence 864 24899999999999999999988765443
No 12
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.93 E-value=9.4e-26 Score=203.95 Aligned_cols=144 Identities=15% Similarity=0.237 Sum_probs=115.3
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCc--EE---EEEeecCCCcc----ccccccc---CCCCHHhhcCCCCCH
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLK--VT---IDELVKPEKAV----ADYRSEI---TGLTADDLVGVTCSL 207 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~--~~---~d~lV~P~~~I----~d~~t~i---~GIT~e~L~~ap~~l 207 (360)
...++|+|||||||+++..++|++|++|..+|. ++ |+.+|+|..+| +++.+++ ||||++|++++| ++
T Consensus 7 ~~~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p-~~ 85 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQV-TH 85 (194)
T ss_dssp -CCEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCC-CH
T ss_pred CCCCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCC-CH
Confidence 456899999999999998888999999976444 33 77899999877 5556555 999999999999 99
Q ss_pred HHHHHHHHHHhhCCCE------EEEEcchhhHHHHcccCC--------CccchHHHhhHhCCCCCCCHHHHHHHHh----
Q 018152 208 AEIQKRMKKLLSNGTI------LVGHSLNNDLEVLKLDHP--------RVIDTSLIFKYVDEYRRPSLYNLCKSVL---- 269 (360)
Q Consensus 208 ~eV~~~l~~~l~~g~i------LVGHnl~fDl~~L~~~~~--------~viDT~~l~~~~~~~~~~sL~~L~~~~L---- 269 (360)
++|+++|.+|+ ++.+ |||||+.||++||+...+ +.+|+. +|..|+++++
T Consensus 86 ~ev~~~~~~~l-~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~------------~l~~l~~~~~p~~~ 152 (194)
T 2gbz_A 86 AQAEAQTVAFL-GEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS------------TIKELARRWAPAVA 152 (194)
T ss_dssp HHHHHHHHHHH-TTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH------------HHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHH-HHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH------------HHHHHHHHhCHHHH
Confidence 99999999999 7887 999999999999998654 356665 3444454432
Q ss_pred -CCccCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 018152 270 -GYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (360)
Q Consensus 270 -g~~iq~~~~~H~AleDA~at~eL~~~~l~~g 300 (360)
+++. ..+|+|++||++|++||+++.++-
T Consensus 153 ~~i~~---~~~H~Al~Da~ata~ll~~~~~~~ 181 (194)
T 2gbz_A 153 SGFAK---SSAHTALSDVRDSIDELRHYRQFM 181 (194)
T ss_dssp TTCCC---CSCCSHHHHHHHHHHHHHHHHTTS
T ss_pred hCCCC---CCCcccHHHHHHHHHHHHHHHHHh
Confidence 2322 248999999999999999888653
No 13
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.92 E-value=7.6e-26 Score=219.10 Aligned_cols=157 Identities=14% Similarity=0.235 Sum_probs=133.6
Q ss_pred CCcEEEEEEeccCCCCCcc---cEEEEEEEEc---CCcE----EEEEeecCCCc--ccccccccCCCCHHhhcCCCCCHH
Q 018152 141 SNIMYAVDCEMVLCEDGSE---GLVRLCVVDR---NLKV----TIDELVKPEKA--VADYRSEITGLTADDLVGVTCSLA 208 (360)
Q Consensus 141 ~~~~ValD~Ettgl~~g~~---~I~~VsvVd~---~g~~----~~d~lV~P~~~--I~d~~t~i~GIT~e~L~~ap~~l~ 208 (360)
...+|+||+||||++++.+ +|++|++|.. +|++ .|++||+|... |+++++++||||++||+++| ++.
T Consensus 18 ~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap-~~~ 96 (308)
T 3cg7_A 18 FDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTAD-TFD 96 (308)
T ss_dssp CSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSC-BHH
T ss_pred CCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCC-CHH
Confidence 3579999999999998755 8999999854 5664 38999999985 99999999999999999999 999
Q ss_pred HHHHHHHHHhhCCCEEEEEcc------hhhH-HHHccc-------CC----CccchHHHhhHhCC-CC------CCCHHH
Q 018152 209 EIQKRMKKLLSNGTILVGHSL------NNDL-EVLKLD-------HP----RVIDTSLIFKYVDE-YR------RPSLYN 263 (360)
Q Consensus 209 eV~~~l~~~l~~g~iLVGHnl------~fDl-~~L~~~-------~~----~viDT~~l~~~~~~-~~------~~sL~~ 263 (360)
+|+++|.+++ ++.++||||+ .||+ .||+.. .+ +.+||..+++...+ .. +++|..
T Consensus 97 evl~~f~~~l-~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~ 175 (308)
T 3cg7_A 97 VVYEQFQQWL-ITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGK 175 (308)
T ss_dssp HHHHHHHHHH-HHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHH
T ss_pred HHHHHHHHHH-HhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHH
Confidence 9999999999 7888999999 9999 698753 23 36999999987654 11 689999
Q ss_pred HHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 018152 264 LCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVD 302 (360)
Q Consensus 264 L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g~~ 302 (360)
++ .++|++... ..|+|++||++|++||+++++.+..
T Consensus 176 l~-~~~gi~~~~--~~HrAl~DA~ata~l~~~l~~~~~~ 211 (308)
T 3cg7_A 176 MN-EYYDLPTIG--RAHDAMDDCLNIATILQRMINMGAK 211 (308)
T ss_dssp HH-HHTTCCCCS--CTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HH-HHcCCCCCC--CCcCHHHHHHHHHHHHHHHHHcCCC
Confidence 99 777998753 3699999999999999999987653
No 14
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.92 E-value=4.5e-25 Score=204.35 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=133.6
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEc----CCcE----EEEEeecC--CCcccccccccCCCCHH-hhcCCCCCHH
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDR----NLKV----TIDELVKP--EKAVADYRSEITGLTAD-DLVGVTCSLA 208 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~----~g~~----~~d~lV~P--~~~I~d~~t~i~GIT~e-~L~~ap~~l~ 208 (360)
....+|+||+||||+++..++|++|++|.. +|.+ .|+.||+| ..+|+++++++||||++ |+.+++ ++.
T Consensus 35 ~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~-~~~ 113 (235)
T 3v9w_A 35 RGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAV-SGY 113 (235)
T ss_dssp TTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCB-CHH
T ss_pred cCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCC-CHH
Confidence 456899999999999988888999999964 5653 48899999 57999999999999999 999999 999
Q ss_pred HHHHHHHHHhh--------CCCEEEEEcchhhHHHHccc-----C---C----CccchHHHhhHhCCCCCCCHHHHHHHH
Q 018152 209 EIQKRMKKLLS--------NGTILVGHSLNNDLEVLKLD-----H---P----RVIDTSLIFKYVDEYRRPSLYNLCKSV 268 (360)
Q Consensus 209 eV~~~l~~~l~--------~g~iLVGHnl~fDl~~L~~~-----~---~----~viDT~~l~~~~~~~~~~sL~~L~~~~ 268 (360)
++.++|..++. ++.++||||+.||+.||+.. . + +++||..+++...+ .++|+.|| .+
T Consensus 114 ~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p--~~~L~~l~-~~ 190 (235)
T 3v9w_A 114 EALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKAC-QT 190 (235)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHH-HH
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC--CCCHHHHH-HH
Confidence 99999999995 58999999999999999754 1 1 36899999998875 46999999 55
Q ss_pred hCCccCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 018152 269 LGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (360)
Q Consensus 269 Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g 300 (360)
+|+++.. +..|+|++||.+|++||.+++++-
T Consensus 191 ~gi~~~~-~~~H~Al~DA~~ta~l~~~l~~~l 221 (235)
T 3v9w_A 191 AGMDFDS-TQAHSALYDTERTAVLFCEIVNRW 221 (235)
T ss_dssp HTCCCCT-TTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCC-CCCcChHHHHHHHHHHHHHHHHHH
Confidence 6888753 248999999999999999888653
No 15
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.92 E-value=3.9e-25 Score=200.00 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=117.8
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCC--cEE---EEEeec-CCC---ccccc---ccccCCCCHHhhcCCCCCH
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNL--KVT---IDELVK-PEK---AVADY---RSEITGLTADDLVGVTCSL 207 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g--~~~---~d~lV~-P~~---~I~d~---~t~i~GIT~e~L~~ap~~l 207 (360)
...++|+|||||||+++..++|++|++|-.+| .++ ++.+|+ |+. .++++ ++.+||||++|++++| ++
T Consensus 7 ~~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p-~~ 85 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSV-DE 85 (186)
T ss_dssp CTTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCC-CH
T ss_pred CCCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCC-CH
Confidence 45689999999999999889999999995454 432 345785 552 23444 4456799999999999 99
Q ss_pred HHHHHHHHHHhh-----CCCEEEEEcchhhHHHHcccC--------CCccc--hHH-HhhHhCCCCCCCHHHHHHHHhCC
Q 018152 208 AEIQKRMKKLLS-----NGTILVGHSLNNDLEVLKLDH--------PRVID--TSL-IFKYVDEYRRPSLYNLCKSVLGY 271 (360)
Q Consensus 208 ~eV~~~l~~~l~-----~g~iLVGHnl~fDl~~L~~~~--------~~viD--T~~-l~~~~~~~~~~sL~~L~~~~Lg~ 271 (360)
++|.++|++|+. ++++|||||+.||++||+.+. .+++| |.. ++|+..| .+. -|+
T Consensus 86 ~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P----~~~------~~~ 155 (186)
T 3tr8_A 86 VEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAP----QIA------AAH 155 (186)
T ss_dssp HHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCH----HHH------TTS
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCc----ccc------ccC
Confidence 999999999995 689999999999999999863 46899 887 8888776 111 144
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 018152 272 EIRKKGTPHNCLDDASAAMKLVLAIIERRV 301 (360)
Q Consensus 272 ~iq~~~~~H~AleDA~at~eL~~~~l~~g~ 301 (360)
+.. ..|+|++||+++.+++.++.+..+
T Consensus 156 ~~~---~~HrAl~Da~ati~~l~~y~~~~~ 182 (186)
T 3tr8_A 156 IKE---SQHLALQDIRDSIEELRYYRAHLL 182 (186)
T ss_dssp CCC---CCSCHHHHHHHHHHHHHHHHHHTB
T ss_pred CCC---CCcChHHHHHHHHHHHHHHHHHhh
Confidence 433 499999999999999999987654
No 16
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.92 E-value=3.1e-25 Score=218.43 Aligned_cols=158 Identities=18% Similarity=0.321 Sum_probs=133.5
Q ss_pred CCcEEEEEEeccCCC----CCcccEEEEEEEEc---CCcEE--EEEeecCCC--cccccccccCCCCHHhhcCCCCCHHH
Q 018152 141 SNIMYAVDCEMVLCE----DGSEGLVRLCVVDR---NLKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAE 209 (360)
Q Consensus 141 ~~~~ValD~Ettgl~----~g~~~I~~VsvVd~---~g~~~--~d~lV~P~~--~I~d~~t~i~GIT~e~L~~ap~~l~e 209 (360)
...+|+||+||||++ +..++|++|++|.. +|+++ |++||+|.. +|+++++++||||++||+++| ++.+
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap-~~~e 205 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQ 205 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSE-EHHH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCC-CHHH
Confidence 468999999999996 34568999999875 45655 899999998 999999999999999999999 9999
Q ss_pred HHHHHHHHhhCC------CEEEEEcchhhHH-HHccc-------CC----CccchHHHhhHhCCCC--CCCHHHHHHHHh
Q 018152 210 IQKRMKKLLSNG------TILVGHSLNNDLE-VLKLD-------HP----RVIDTSLIFKYVDEYR--RPSLYNLCKSVL 269 (360)
Q Consensus 210 V~~~l~~~l~~g------~iLVGHnl~fDl~-~L~~~-------~~----~viDT~~l~~~~~~~~--~~sL~~L~~~~L 269 (360)
|+.+|.+|+.+. .++||||+.||+. ||+.. .+ +++||..+|+...+.. .++|..|| .++
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~-~~~ 284 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKL 284 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHH-HHT
T ss_pred HHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHH-HHc
Confidence 999999999433 4999999999999 99763 23 3799999988765523 48999999 567
Q ss_pred CCccCCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 018152 270 GYEIRKKGTPHNCLDDASAAMKLVLAIIERRVD 302 (360)
Q Consensus 270 g~~iq~~~~~H~AleDA~at~eL~~~~l~~g~~ 302 (360)
|++.. +.+|+|+.||++|++||+++++.+..
T Consensus 285 gi~~~--g~~HrAl~DA~ata~ll~~ll~~~~~ 315 (349)
T 1zbu_A 285 GMDYD--GRPHCGLDDSKNIARIAVRMLQDGCE 315 (349)
T ss_dssp TCCCC--SCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 98875 24799999999999999999987654
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.90 E-value=7.3e-24 Score=216.51 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=129.1
Q ss_pred CCCCcEEEEEEeccCCCCCcccEEEEEEEEc--CCcEE---EEEeecCCCcc--cccccccCCCCHHhhcCCCCCHHHHH
Q 018152 139 MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDR--NLKVT---IDELVKPEKAV--ADYRSEITGLTADDLVGVTCSLAEIQ 211 (360)
Q Consensus 139 ~~~~~~ValD~Ettgl~~g~~~I~~VsvVd~--~g~~~---~d~lV~P~~~I--~d~~t~i~GIT~e~L~~ap~~l~eV~ 211 (360)
+...++|+||+||||+++..++|++|++|.. +|.++ ++.||+|..+| ++..+.+||||++||.++|..+.+|+
T Consensus 6 ~~~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl 85 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFA 85 (482)
T ss_dssp -CCCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHH
Confidence 3456899999999999988889999999975 56665 99999999988 56788999999999999885679999
Q ss_pred HHHHHHhh-CCCEEEEEc-chhhHHHHcccC---------------CCccchHHHhhHhC--------------CCCCCC
Q 018152 212 KRMKKLLS-NGTILVGHS-LNNDLEVLKLDH---------------PRVIDTSLIFKYVD--------------EYRRPS 260 (360)
Q Consensus 212 ~~l~~~l~-~g~iLVGHn-l~fDl~~L~~~~---------------~~viDT~~l~~~~~--------------~~~~~s 260 (360)
.+|.++++ .|+++|||| +.||+.||+... ...+||..+++... +..+++
T Consensus 86 ~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~k 165 (482)
T 2qxf_A 86 ARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFR 165 (482)
T ss_dssp HHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCC
T ss_pred HHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCC
Confidence 99999994 399999999 999999998641 23578888776543 234789
Q ss_pred HHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 018152 261 LYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (360)
Q Consensus 261 L~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g 300 (360)
|..|| .++|++.. .+|+|++||++|++||+++.+..
T Consensus 166 L~~L~-~~~Gi~~~---~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 166 LEHLT-KANGIEHS---NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp HHHHH-HHTTCCCC------CTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHH-HHcCCCCC---CCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999 66798864 38999999999999999877643
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.97 E-value=6.3e-09 Score=108.88 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=102.8
Q ss_pred cEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhCCC
Q 018152 143 IMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGT 222 (360)
Q Consensus 143 ~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~g~ 222 (360)
++|+||+||||+++-..+|+.|+++-.+|... ||.+.. .. + |+ .+++ ++.++.+.|..++ .+.
T Consensus 27 ~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~---yip~~~---~~---~-~~-----~~~l-~~~~vl~~L~~~L-~d~ 89 (605)
T 2kfn_A 27 PVFAFDTETDSLDNISANLVGLSFAIEPGVAA---YIPVAH---DY---L-DA-----PDQI-SRERALELLKPLL-EDE 89 (605)
T ss_dssp SSEEEEEEESCSCTTTCCEEEEEEEEETTEEE---EEECCC---CS---T-TC-----CCCC-CHHHHHHHHHHHH-TCT
T ss_pred CeEEEEEecCCCCcccCceEEEEEEEcCCcEE---EEeccc---cc---c-cc-----cccc-CHHHHHHHHHHHH-cCC
Confidence 67999999999987566799988885566543 452211 01 1 21 2344 7899999999999 554
Q ss_pred --EEEEEcchhhHHHHccc---CC-CccchHHHhhHhCC-CCCCCHHHHHHHHhCCccC-------CCCC----------
Q 018152 223 --ILVGHSLNNDLEVLKLD---HP-RVIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIR-------KKGT---------- 278 (360)
Q Consensus 223 --iLVGHnl~fDl~~L~~~---~~-~viDT~~l~~~~~~-~~~~sL~~L~~~~Lg~~iq-------~~~~---------- 278 (360)
++||||+.||+.+|+.. .+ .+.||..++..+.+ ..+++|+.||++|||.... .+..
T Consensus 90 ~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le 169 (605)
T 2kfn_A 90 KALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALE 169 (605)
T ss_dssp TSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCHH
T ss_pred CCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCHH
Confidence 89999999999999763 23 37999999988887 5689999999999776531 1100
Q ss_pred --CCChHHHHHHHHHHHHHHHHh
Q 018152 279 --PHNCLDDASAAMKLVLAIIER 299 (360)
Q Consensus 279 --~H~AleDA~at~eL~~~~l~~ 299 (360)
.|.|..||.++++||..+.+.
T Consensus 170 ~~~~yAa~Da~~~~~L~~~L~~~ 192 (605)
T 2kfn_A 170 EAGRYAAEDADVTLQLHLKMWPD 192 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 145889999999999877654
No 19
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.8e-08 Score=91.15 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=94.8
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEee--cCCCcccccccc--cCCCCHHhhcCCCCCHHHHHHHHHH
Q 018152 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELV--KPEKAVADYRSE--ITGLTADDLVGVTCSLAEIQKRMKK 216 (360)
Q Consensus 141 ~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV--~P~~~I~d~~t~--i~GIT~e~L~~ap~~l~eV~~~l~~ 216 (360)
+..-+.+|||||+... +.+|++|++|..+|+.+|-..- .| ..+.++..+ +.++...-..... ++.++..+|.+
T Consensus 21 ~m~r~FlDTEFt~d~~-~~eLISIGlV~EdGrEFYav~~d~d~-~~~~~wVr~~Vlp~L~~~~~~~~~-s~~~i~~~L~~ 97 (190)
T 4hec_A 21 SMVRYFYDTEFIEDGH-TIELISIGVVAEDGREYYAVSTEFDP-ERAGSWVRTHVLPKLPPPASQLWR-SRQQIRLDLEE 97 (190)
T ss_dssp CEEEEEEEEEEEECSS-CEEEEEEEEEETTSCEEEEEETTSCG-GGCCHHHHHHTGGGSCCTTSTTEE-CHHHHHHHHHH
T ss_pred ceeEEEEeeeecCCCC-CCCEEEEEEEcCCCCEEEEEecCCCh-hhCcHHHHhccccCCCCCcccccC-CHHHHHHHHHH
Confidence 3456899999998333 3469999999999987554332 23 234444332 4566543333334 89999999999
Q ss_pred HhhCC----CEEEEEcchhhHHHHcccCCCccchHHHhhHhCCCCCCCHHHHHHHHhCCc-cC-CCCCCCChHHHHHHHH
Q 018152 217 LLSNG----TILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYE-IR-KKGTPHNCLDDASAAM 290 (360)
Q Consensus 217 ~l~~g----~iLVGHnl~fDl~~L~~~~~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~-iq-~~~~~H~AleDA~at~ 290 (360)
|+... ..|+||+..+|..+|.....+..+. +...+.....|+.++ ..+|.+ +. ..+..|+||.||++.+
T Consensus 98 FL~~~~~~~~eLwa~~~~yD~~~L~ql~g~m~~l----P~~~p~~~~dlr~~~-~~~g~~~lp~~~~~~H~AL~DAR~n~ 172 (190)
T 4hec_A 98 FLRIDGTDSIELWAWVGAYDHVALCQLWGPMTAL----PPTVPRFTRELRQLW-EDRGCPRMPPRPRDVHDALVDARDQL 172 (190)
T ss_dssp HTTTTSSCEEEEEESSCHHHHHHHHTTTSSGGGS----CTTSCSSCEEHHHHH-HHTTCCCCCC-----CCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEecccccHHHHHHHhcccccC----CcccchhhHHHHHHH-HHcCCCCCCCCCCCCcCcHHHHHHHH
Confidence 99422 2699999999999997654332211 001112344677777 344432 22 1235799999999999
Q ss_pred HHHHHHHH
Q 018152 291 KLVLAIIE 298 (360)
Q Consensus 291 eL~~~~l~ 298 (360)
..|+.+..
T Consensus 173 ~~~~~~~~ 180 (190)
T 4hec_A 173 RRFRLITS 180 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99986653
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.81 E-value=3.7e-09 Score=112.40 Aligned_cols=133 Identities=15% Similarity=0.201 Sum_probs=96.2
Q ss_pred EEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhCCCE
Q 018152 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTI 223 (360)
Q Consensus 144 ~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~g~i 223 (360)
+|+||+||||+++..++|+.|.+.+..+...+ .+.|. .+.++.+.|..++.++.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~--~~~p~-----------------------~i~~~l~~L~~~l~~~~~ 55 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYV--SYRPS-----------------------DFGAYLDALEAEVARGGL 55 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEE--EECGG-----------------------GHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEE--EEChH-----------------------HHHHHHHHHHHHHhcCCe
Confidence 58999999999987778999999986432222 22221 234566777777755678
Q ss_pred EEEEcc-hhhHHHHccc----------CC--CccchHHHhhHhCC-CCCCCHHHHHHHHh-------CCcc-----C---
Q 018152 224 LVGHSL-NNDLEVLKLD----------HP--RVIDTSLIFKYVDE-YRRPSLYNLCKSVL-------GYEI-----R--- 274 (360)
Q Consensus 224 LVGHnl-~fDl~~L~~~----------~~--~viDT~~l~~~~~~-~~~~sL~~L~~~~L-------g~~i-----q--- 274 (360)
+||||+ .||+.+|... .+ .+.||+.+++.+.+ ..+++|+.||++|| |... .
T Consensus 56 kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~ 135 (698)
T 1x9m_A 56 IVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKD 135 (698)
T ss_dssp EEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHH
T ss_pred EEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHH
Confidence 999999 9999999643 23 47999999988887 56899999998886 4221 0
Q ss_pred --------CCCC--------------CCChHHHHHHHHHHHHHHHHhcc
Q 018152 275 --------KKGT--------------PHNCLDDASAAMKLVLAIIERRV 301 (360)
Q Consensus 275 --------~~~~--------------~H~AleDA~at~eL~~~~l~~g~ 301 (360)
.+.. .|.|..||.++++||..+.+.-.
T Consensus 136 ~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~ 184 (698)
T 1x9m_A 136 DFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKH 184 (698)
T ss_dssp HHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 35688999999999998876433
No 21
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.30 E-value=7.1e-07 Score=92.32 Aligned_cols=118 Identities=16% Similarity=0.039 Sum_probs=91.3
Q ss_pred cEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhCCC
Q 018152 143 IMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGT 222 (360)
Q Consensus 143 ~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~g~ 222 (360)
+.+++|+||.+.+.-...++.|++-. .|+. + +| . ++...|..++ .+.
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~-~~~a-~--~i----------------~------------~~l~~l~~~l-~d~ 57 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAAR-GGRV-H--RA----------------P------------EPYKALRDLK-EAR 57 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEE-TTEE-E--EC----------------S------------SHHHHHTTCS-SBC
T ss_pred CceEEEEEecCCccCcccEEEEEEEc-CCEE-E--Ee----------------h------------hhHHHHHHHH-cCC
Confidence 45899999999997766787777764 3432 2 11 0 2567888999 678
Q ss_pred EEEEEcchhhHHHHcccCCCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 018152 223 ILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (360)
Q Consensus 223 iLVGHnl~fDl~~L~~~~~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g 300 (360)
.+||||+.||+....+....+.||...+..+.+. +++|+.||++|++. + +|++.+||.++++||..+.+.-
T Consensus 58 ~kV~hn~K~Dl~~~Gi~~~~~fDT~laAyLL~p~-~~~L~~La~~yl~~-~-----gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 58 GLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPS-NTTPEGVARRYGGE-W-----TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp STTHHHHHHHHHHTTCCCCBCCCHHHHHHHHCTT-CCCHHHHHHHHTSC-C-----CSCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEeccHHHHHHcCCCCCcceeHHHHHHHhCCC-CCCHHHHHHHHhhh-h-----ccchHHHHHHHHHHHHHHHHHH
Confidence 8999999999993333333578999999888887 99999999999876 2 5789999999999998776543
No 22
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=98.09 E-value=2.5e-05 Score=78.65 Aligned_cols=131 Identities=16% Similarity=0.072 Sum_probs=86.2
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhh-
Q 018152 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS- 219 (360)
Q Consensus 141 ~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~- 219 (360)
....|+||+|+++.+.....++-|.+-..++. .+|.|-.. + . ....|..++.
T Consensus 128 ~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~----~lidpl~l---------~---~-----------~l~~L~~lL~d 180 (428)
T 3saf_A 128 NCQEFAVNLEHHSYRSFLGLTCLMQISTRTED----FIIDTLEL---------R---S-----------DMYILNESLTD 180 (428)
T ss_dssp TCSEEEEEEEEECTTCSSCEEEEEEEECSSCE----EEEETTTT---------G---G-----------GGGGGHHHHTC
T ss_pred cCCeEEEEEEecCCCCCCCeEEEEEEEeCCcE----EEEEeccc---------h---h-----------hHHHHHHHHcC
Confidence 35799999999988765555555555544433 23333221 0 1 1123444552
Q ss_pred CCCEEEEEcchhhHHHHccc----CCCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCC-------------CCh
Q 018152 220 NGTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTP-------------HNC 282 (360)
Q Consensus 220 ~g~iLVGHnl~fDl~~L~~~----~~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~-------------H~A 282 (360)
.+.+-||||+.+|+..|... ...+.||...+..+.. .+++|+.|++++||+.+..+... +-|
T Consensus 181 p~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~-~~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YA 259 (428)
T 3saf_A 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL-GRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYA 259 (428)
T ss_dssp TTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTC-SCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHH
T ss_pred CCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCC-CCCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHHH
Confidence 34567999999999999532 2347899877766544 45899999999999987642111 235
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018152 283 LDDASAAMKLVLAIIER 299 (360)
Q Consensus 283 leDA~at~eL~~~~l~~ 299 (360)
..||.++.+||..+...
T Consensus 260 A~DA~~ll~L~~~L~~~ 276 (428)
T 3saf_A 260 RDDTHYLLYIYDKMRLE 276 (428)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999999999876644
No 23
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=97.91 E-value=2.5e-05 Score=83.98 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=98.0
Q ss_pred CCcEEEEEEeccC---CCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHH
Q 018152 141 SNIMYAVDCEMVL---CEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 217 (360)
Q Consensus 141 ~~~~ValD~Ettg---l~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~ 217 (360)
+.++++||+||+| .++..+.|+.|+++..++..++. + .+|....+...+ +-.+...+|.++
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t-~--------------~~i~~~~v~~~~-~E~~LL~~f~~~ 197 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVIT-W--------------KKIDLPYVDVVS-TEKEMIKRFLRV 197 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEE-S--------------SCCCCSSEEECS-CHHHHHHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEe-e--------------ccccccceEEcC-CHHHHHHHHHHH
Confidence 5689999999998 55566789999998766543321 0 112222345556 788899999988
Q ss_pred hhCC--CEEEEEcc-hhhHHHHccc-------C-----------------------CC-ccchHHHhhHhCCCCCCCHHH
Q 018152 218 LSNG--TILVGHSL-NNDLEVLKLD-------H-----------------------PR-VIDTSLIFKYVDEYRRPSLYN 263 (360)
Q Consensus 218 l~~g--~iLVGHnl-~fDl~~L~~~-------~-----------------------~~-viDT~~l~~~~~~~~~~sL~~ 263 (360)
+..- .+|||||. .||+.+|... . .+ .+|+..+++......+++|++
T Consensus 198 i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~ 277 (775)
T 1qht_A 198 VREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEA 277 (775)
T ss_dssp HHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCHHH
T ss_pred HHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCHHH
Confidence 8533 49999996 6899887531 0 12 479988888766577899999
Q ss_pred HHHHHhCCccCC-----------CCC-----CCChHHHHHHHHHHHHHHH
Q 018152 264 LCKSVLGYEIRK-----------KGT-----PHNCLDDASAAMKLVLAII 297 (360)
Q Consensus 264 L~~~~Lg~~iq~-----------~~~-----~H~AleDA~at~eL~~~~l 297 (360)
+|+.+||..-.. ++. .+-++.||..+..|+.+++
T Consensus 278 Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 278 VYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp HHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 998899975321 000 1224679999999987554
No 24
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=97.70 E-value=0.00015 Score=65.95 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=62.7
Q ss_pred HHHHhh-CCCEEEEEcchhhHHHHcccC----CCccchHHHhhHhCC---CCCCCHHHHHHHHhCCcc-CCC-------C
Q 018152 214 MKKLLS-NGTILVGHSLNNDLEVLKLDH----PRVIDTSLIFKYVDE---YRRPSLYNLCKSVLGYEI-RKK-------G 277 (360)
Q Consensus 214 l~~~l~-~g~iLVGHnl~fDl~~L~~~~----~~viDT~~l~~~~~~---~~~~sL~~L~~~~Lg~~i-q~~-------~ 277 (360)
|.+++. ++-+.|||++.+|+..|+..+ ..++||..++....+ ..+.||+.|++.+||+++ ..+ .
T Consensus 100 L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~ 179 (206)
T 1vk0_A 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK 179 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG
T ss_pred HHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC
Confidence 555663 346889999999999997753 358999888765444 467899999999999998 210 0
Q ss_pred -----CCCChHHHHHHHHHHHHHHH
Q 018152 278 -----TPHNCLDDASAAMKLVLAII 297 (360)
Q Consensus 278 -----~~H~AleDA~at~eL~~~~l 297 (360)
.-+-|..||.++.+||.++.
T Consensus 180 pLs~~Qi~YAA~Da~~l~~l~~~L~ 204 (206)
T 1vk0_A 180 AGPEEQLEAAAIEGWLIVNVWDQLS 204 (206)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12457789999999998665
No 25
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.65 E-value=0.00069 Score=66.94 Aligned_cols=151 Identities=10% Similarity=0.030 Sum_probs=95.8
Q ss_pred CCcEEEEEEeccC--CC-C--CcccEEEEEEEEcCCcEE-EEEeecCC-Cccccccc---------ccCCCCHH---hh-
Q 018152 141 SNIMYAVDCEMVL--CE-D--GSEGLVRLCVVDRNLKVT-IDELVKPE-KAVADYRS---------EITGLTAD---DL- 200 (360)
Q Consensus 141 ~~~~ValD~Ettg--l~-~--g~~~I~~VsvVd~~g~~~-~d~lV~P~-~~I~d~~t---------~i~GIT~e---~L- 200 (360)
+.++++||+||++ .. + ..+.|..|++++..+... .-.+++++ ....++.. .+..-.+. .+
T Consensus 105 ~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~ 184 (388)
T 1noy_A 105 FVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVI 184 (388)
T ss_dssp GCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred CeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEEEEeeccCCCCCccccccccccccccccccccccCCCeE
Confidence 4579999999998 11 1 134799999998755532 11345542 11111111 11111111 11
Q ss_pred -cCCCCCHHHHHHHHHHHhh--CCCEEEEEcc-hhhHHHHcc----------c--------------------------C
Q 018152 201 -VGVTCSLAEIQKRMKKLLS--NGTILVGHSL-NNDLEVLKL----------D--------------------------H 240 (360)
Q Consensus 201 -~~ap~~l~eV~~~l~~~l~--~g~iLVGHnl-~fDl~~L~~----------~--------------------------~ 240 (360)
...+ +-.+...+|.+++. .-.|++|||. .||+.+|.. . .
T Consensus 185 v~~~~-~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~ 263 (388)
T 1noy_A 185 YMPFD-NERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSID 263 (388)
T ss_dssp EEEES-CHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEET
T ss_pred EEEcC-CHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEc
Confidence 2334 67789999999984 2369999997 779876521 0 0
Q ss_pred CC-ccchHHHhhHh-CC-CCCCCHHHHHHHHhCCccCCCCCCC-C----------------hHHHHHHHHHHHHHH
Q 018152 241 PR-VIDTSLIFKYV-DE-YRRPSLYNLCKSVLGYEIRKKGTPH-N----------------CLDDASAAMKLVLAI 296 (360)
Q Consensus 241 ~~-viDT~~l~~~~-~~-~~~~sL~~L~~~~Lg~~iq~~~~~H-~----------------AleDA~at~eL~~~~ 296 (360)
.| ++|+..+++.. .. ..+++|+++|+.+||..-. .| . ++.||..+++|+.++
T Consensus 264 GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~----d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 264 GVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKL----PYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp TSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCC----CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCC----CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 58888888883 44 6899999999989987532 12 2 578999999999863
No 26
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=97.62 E-value=0.00079 Score=64.24 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=102.3
Q ss_pred CcEEEEEEeccCCCCC---c------------------ccEEEEEE--EEcCCc-----EE--EEEeecCCCcccc-ccc
Q 018152 142 NIMYAVDCEMVLCEDG---S------------------EGLVRLCV--VDRNLK-----VT--IDELVKPEKAVAD-YRS 190 (360)
Q Consensus 142 ~~~ValD~Ettgl~~g---~------------------~~I~~Vsv--Vd~~g~-----~~--~d~lV~P~~~I~d-~~t 190 (360)
.++||+|+|++|+-.. . -.|+++++ .+.+|. .. |.-.+.|.+.+-. ...
T Consensus 34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~SI 113 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 113 (285)
T ss_dssp CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccccccHHHH
Confidence 4699999999997421 0 02555554 455543 22 4445566543321 111
Q ss_pred ---ccCCCCHHhhcCCCCCHHHHHHHHHH---HhhCCCEEEEEcchhhHHHHccc--------------------CCCcc
Q 018152 191 ---EITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKLD--------------------HPRVI 244 (360)
Q Consensus 191 ---~i~GIT~e~L~~ap~~l~eV~~~l~~---~l~~g~iLVGHnl~fDl~~L~~~--------------------~~~vi 244 (360)
+-|||.=..+...+++..+..+.+.. .+..+...|.|+-.+|+.+|-.. .|.+.
T Consensus 114 ~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vY 193 (285)
T 4gmj_B 114 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY 193 (285)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEE
T ss_pred HHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhh
Confidence 23777776666555565555544442 23366777877777899887431 35688
Q ss_pred chHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 018152 245 DTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVD 302 (360)
Q Consensus 245 DT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g~~ 302 (360)
||-.|.+.... .+.+|..|| ..||++-- +..|.|-.||..|+..|.++.+.-.+
T Consensus 194 D~K~l~~~~~~-l~ggL~~lA-~~L~v~r~--g~~HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 194 DVKYLMKSCKN-LKGGLQEVA-EQLELERI--GPQHQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp EHHHHGGGSTT-CCSCHHHHH-HHTTCCCC--SCTTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHhccc-cCChHHHHH-HhCCCCCC--CCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 99988876544 456899999 66787632 45899999999999999998876544
No 27
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=97.62 E-value=0.00038 Score=62.27 Aligned_cols=87 Identities=22% Similarity=0.156 Sum_probs=60.5
Q ss_pred HHHHHhhC-CCEEEEEcchhhHHHHccc----CCCccchHHHhhHhCC-CCCCCHHHHHHHHhCCccCCC---------C
Q 018152 213 RMKKLLSN-GTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIRKK---------G 277 (360)
Q Consensus 213 ~l~~~l~~-g~iLVGHnl~fDl~~L~~~----~~~viDT~~l~~~~~~-~~~~sL~~L~~~~Lg~~iq~~---------~ 277 (360)
.|..++.. +.+.||||+.+|+..|... ...+.|...++.++.+ ..+++|+.|++.+||..+..+ .
T Consensus 87 ~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~ 166 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSN 166 (208)
T ss_dssp HHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTS
T ss_pred HHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCCC
Confidence 46666633 3578999999999999762 2348895556655543 568999999999988766321 0
Q ss_pred -C-----CCChHHHHHHHHHHHHHHHHh
Q 018152 278 -T-----PHNCLDDASAAMKLVLAIIER 299 (360)
Q Consensus 278 -~-----~H~AleDA~at~eL~~~~l~~ 299 (360)
. .+-|..||.++.+||..+.+.
T Consensus 167 ~~L~~~q~~YAa~Da~~~~~L~~~L~~~ 194 (208)
T 2e6m_A 167 FPLTEDQKLYAATDAYAGLIIYQKLGNL 194 (208)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 012568999999999876643
No 28
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.49 E-value=0.0012 Score=64.77 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=83.9
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhC-
Q 018152 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSN- 220 (360)
Q Consensus 142 ~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~- 220 (360)
..+|+||+|+++.......++-|.+-..+ .+. ++.|. .+ +. ...|..++..
T Consensus 22 ~~~va~D~E~~~~~~~~~~l~liqla~~~-~~~---lid~~-----------~l------~~-------~~~L~~ll~d~ 73 (375)
T 1yt3_A 22 FPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLA---LIDPL-----------GI------TD-------WSPLKAILRDP 73 (375)
T ss_dssp SSEEEEEEEEECCSCSSCEEEEEEEECSS-CEE---EECGG-----------GC------SC-------CHHHHHHHHCT
T ss_pred CCeEEEEeeecCCCcCCCceEEEEEecCC-cEE---EEeCC-----------CC------CC-------hHHHHHHHcCC
Confidence 47899999999876433345554443322 211 22220 11 00 1345566633
Q ss_pred CCEEEEEcchhhHHHHccc----CCCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCC-------C------CChH
Q 018152 221 GTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGT-------P------HNCL 283 (360)
Q Consensus 221 g~iLVGHnl~fDl~~L~~~----~~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~-------~------H~Al 283 (360)
+.+.||||+.+|+.+|... ...+.||...+..+.+..+++|+.|++.|+|..+.++.. . +-|.
T Consensus 74 ~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa 153 (375)
T 1yt3_A 74 SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAA 153 (375)
T ss_dssp TSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHH
T ss_pred CceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHH
Confidence 4568999999999999652 235799998777765556899999999999987654210 0 1155
Q ss_pred HHHHHHHHHHHHHHHh
Q 018152 284 DDASAAMKLVLAIIER 299 (360)
Q Consensus 284 eDA~at~eL~~~~l~~ 299 (360)
.||.++..||..+.+.
T Consensus 154 ~Da~~l~~L~~~L~~~ 169 (375)
T 1yt3_A 154 ADVWYLLPITAKLMVE 169 (375)
T ss_dssp HHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7999999999876643
No 29
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=97.42 E-value=0.00023 Score=74.27 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=89.8
Q ss_pred cEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhh-CC
Q 018152 143 IMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS-NG 221 (360)
Q Consensus 143 ~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~-~g 221 (360)
.-.++|+||++.++-..+++.|++-...+ . .||.+. . ..+...|..++. .+
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~~~~--a--~yIp~~----~--------------------~~~l~~Lk~lLed~~ 81 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVNEHG--R--FFLRPE----T--------------------ALADPQFVAWLGDET 81 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTE--E--EEECHH----H--------------------HTTCHHHHHHHTCTT
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEcCCc--e--EEEccc----h--------------------hhHHHHHHHHHhCCC
Confidence 35699999999998776787787776543 1 344211 0 113345666672 23
Q ss_pred CEEEEEcchhhHHHHcccC---C-CccchHHHhhHhCC-CCCCCHHHHHHHHhCCccCCC------CC----------CC
Q 018152 222 TILVGHSLNNDLEVLKLDH---P-RVIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIRKK------GT----------PH 280 (360)
Q Consensus 222 ~iLVGHnl~fDl~~L~~~~---~-~viDT~~l~~~~~~-~~~~sL~~L~~~~Lg~~iq~~------~~----------~H 280 (360)
...||||+.+|+.+|+... + .+.||...+..+.+ ..+++|+.||++|||..+... +. .+
T Consensus 82 i~KV~hn~K~Dl~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~ 161 (592)
T 3pv8_A 82 KKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAE 161 (592)
T ss_dssp SEEEESSHHHHHHHHHHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHH
T ss_pred CeEEEechHHHHHHHHHcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHH
Confidence 5899999999999997542 2 36799988877777 558999999999999876420 00 12
Q ss_pred ChHHHHHHHHHHHHHHHHh
Q 018152 281 NCLDDASAAMKLVLAIIER 299 (360)
Q Consensus 281 ~AleDA~at~eL~~~~l~~ 299 (360)
.|.+||.++.+||..+...
T Consensus 162 YAa~DA~~l~~L~~~L~~~ 180 (592)
T 3pv8_A 162 HLVRKAAAIWELERPFLDE 180 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3568999999999776543
No 30
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=97.16 E-value=0.0034 Score=62.58 Aligned_cols=130 Identities=18% Similarity=0.090 Sum_probs=81.9
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhC-
Q 018152 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSN- 220 (360)
Q Consensus 142 ~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~- 220 (360)
...|+||+|+++.+.....++-|.+-.. +.+. +|.|- .+. . ....|..++..
T Consensus 106 ~~~vavDtE~~~~~~~~~~l~liQla~~-~~~y---lid~l-----------~l~-------~-----~l~~L~~lL~d~ 158 (410)
T 2hbj_A 106 TKEIAVDLEHHDYRSYYGIVCLMQISTR-ERDY---LVDTL-----------KLR-------E-----NLHILNEVFTNP 158 (410)
T ss_dssp CSEEEEEEEEECSSSSSCEEEEEEEECS-SCEE---EEETT-----------TTT-------T-----TGGGGHHHHTCT
T ss_pred CCceEEEeeecCCcCCCCcEEEEEEEEC-CcEE---EEech-----------hhh-------h-----hHHHHHHHHcCC
Confidence 4789999999987543333444333332 2221 12221 110 0 11235556633
Q ss_pred CCEEEEEcchhhHHHHccc----CCCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCC-------------CChH
Q 018152 221 GTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTP-------------HNCL 283 (360)
Q Consensus 221 g~iLVGHnl~fDl~~L~~~----~~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~-------------H~Al 283 (360)
+.+.||||+.+|+..|... ...+.||...+..+.+ .+++|+.|++.++|..+..+... +-|.
T Consensus 159 ~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~-~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa 237 (410)
T 2hbj_A 159 SIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL-PRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAAR 237 (410)
T ss_dssp TSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTC-SCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHH
T ss_pred CceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCC-CccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHH
Confidence 3568999999999999652 2348999987766554 37999999999999876532100 1156
Q ss_pred HHHHHHHHHHHHHHHh
Q 018152 284 DDASAAMKLVLAIIER 299 (360)
Q Consensus 284 eDA~at~eL~~~~l~~ 299 (360)
.||.++..||..+...
T Consensus 238 ~Da~~ll~L~~~L~~~ 253 (410)
T 2hbj_A 238 ADTHFLLNIYDQLRNK 253 (410)
T ss_dssp HHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999877654
No 31
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0024 Score=69.90 Aligned_cols=144 Identities=15% Similarity=0.199 Sum_probs=94.2
Q ss_pred CCCcEEEEEEeccCC-----CCCcccEEEEEEE-EcCCcE--EEEE-e-ecCCCcccccccccCCCCHHhhcCCCCCHHH
Q 018152 140 TSNIMYAVDCEMVLC-----EDGSEGLVRLCVV-DRNLKV--TIDE-L-VKPEKAVADYRSEITGLTADDLVGVTCSLAE 209 (360)
Q Consensus 140 ~~~~~ValD~Ettgl-----~~g~~~I~~VsvV-d~~g~~--~~d~-l-V~P~~~I~d~~t~i~GIT~e~L~~ap~~l~e 209 (360)
.+-++++||+||++- ++..+.|+.|+.+ ...|.. .... + +.+..+ +....+...+ +-.+
T Consensus 247 PplrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~----------~~~~~V~~~~-sE~e 315 (919)
T 3iay_A 247 APLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSP----------ITGSMIFSHA-TEEE 315 (919)
T ss_dssp CCCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCC----------BTTBEEEEES-SHHH
T ss_pred CCceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCC----------CCCCeEEECC-CHHH
Confidence 356899999999853 2345689999865 445421 1111 1 122111 1223455556 7889
Q ss_pred HHHHHHHHhhC--CCEEEEEcc-hhhHHHHcc-------cC-----------------------------------CC-c
Q 018152 210 IQKRMKKLLSN--GTILVGHSL-NNDLEVLKL-------DH-----------------------------------PR-V 243 (360)
Q Consensus 210 V~~~l~~~l~~--g~iLVGHnl-~fDl~~L~~-------~~-----------------------------------~~-v 243 (360)
++.+|.+++.. -.|++|||+ .||+.+|.. .. .| +
T Consensus 316 LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~ 395 (919)
T 3iay_A 316 MLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQ 395 (919)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEE
Confidence 99999999842 489999998 689988732 10 01 4
Q ss_pred cchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCCC-------------------ChHHHHHHHHHHHHHH
Q 018152 244 IDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPH-------------------NCLDDASAAMKLVLAI 296 (360)
Q Consensus 244 iDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~H-------------------~AleDA~at~eL~~~~ 296 (360)
+|+..+.+......+++|+++|+.+||..-.. -.| -++.||..+++|+.++
T Consensus 396 lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~d--v~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 396 LDLLQFIQREYKLRSYTLNAVSAHFLGEQKED--VHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEHHHHHHHHCCCSCCCHHHHHHHHHCCC--------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEhHHHHHhhcCCCCCCHHHHHHHhcccCCCC--CCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888877765578999999999999965321 011 1368999999999775
No 32
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=96.98 E-value=0.017 Score=54.01 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=102.2
Q ss_pred CcEEEEEEeccCCCCCc---------------------ccEEEEE--EEEcCCcE-----E--EEEeecCCCccc-ccc-
Q 018152 142 NIMYAVDCEMVLCEDGS---------------------EGLVRLC--VVDRNLKV-----T--IDELVKPEKAVA-DYR- 189 (360)
Q Consensus 142 ~~~ValD~Ettgl~~g~---------------------~~I~~Vs--vVd~~g~~-----~--~d~lV~P~~~I~-d~~- 189 (360)
.++||+|+|++|+.... -.|++++ +.+.+|+. . |+-..+....+- ...
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~~~Si 103 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 103 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcccccCHHHH
Confidence 47999999999985210 0255544 45655542 2 222333322111 011
Q ss_pred --cccCCCCHHhhcCCCCCHHHHHHHHHH---HhhCCCEEEEEcchhhHHHHccc--------------------CCCcc
Q 018152 190 --SEITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKLD--------------------HPRVI 244 (360)
Q Consensus 190 --t~i~GIT~e~L~~ap~~l~eV~~~l~~---~l~~g~iLVGHnl~fDl~~L~~~--------------------~~~vi 244 (360)
-+-+||.=+.....+++..+..+.+.. .++.+-..|.|+-.+|+.+|=.. .|.+.
T Consensus 104 ~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iy 183 (252)
T 2d5r_A 104 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY 183 (252)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEE
T ss_pred HHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchh
Confidence 134677777776666666665555543 23345688999999999876331 35688
Q ss_pred chHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhcccC
Q 018152 245 DTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDN 303 (360)
Q Consensus 245 DT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g~~~ 303 (360)
||-.+.+.... -+.+|..|+ +.||.+- . +..|.|-.||..|+..|.++.+...+.
T Consensus 184 D~K~l~~~~~~-l~~gL~~la-~~L~v~r-~-g~~HqAGsDsllT~~~F~km~~~~f~~ 238 (252)
T 2d5r_A 184 DVKYLMKSCKN-LKGGLQEVA-EQLELER-I-GPQHQAGSDSLLTGMAFFKMREMFFED 238 (252)
T ss_dssp EHHHHGGGCTT-CCSSHHHHH-HHHTCCC-C-SSTTSHHHHHHHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHhcc-cCCCHHHHH-HHcCCCc-c-CcccchhhhHHHHHHHHHHHHHHhcCC
Confidence 99988887543 357899999 6667663 2 468999999999999999888765543
No 33
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=96.80 E-value=0.0099 Score=64.45 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=92.8
Q ss_pred CCcEEEEEEec-cCCC-----CC--cccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHH
Q 018152 141 SNIMYAVDCEM-VLCE-----DG--SEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQK 212 (360)
Q Consensus 141 ~~~~ValD~Et-tgl~-----~g--~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~ 212 (360)
+-++++||+|| ++.. +. .+.|+.|++++.+|...+ .+++|+.. +...+.+. ...+...+ +-.+++.
T Consensus 189 ~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~-~~~~~~~~-~~~~~~i~---~~~v~~~~-~E~~LL~ 262 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKV-LVLNRNDV-NEGSVKLD---GISVERFN-TEYELLG 262 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEE-EEECSSCC-CCCCEEET---TEEEEEES-SHHHHHH
T ss_pred CceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEE-EEEeCCcc-cccccCCC---CCeEEEeC-CHHHHHH
Confidence 56899999999 7531 21 257999999977765322 34455321 11111222 22344455 7889999
Q ss_pred HHHHHhhCCCEEEEEcc-hhhHHHHccc-----C-----C-------------C-ccchHHHhhH------hCC--CCCC
Q 018152 213 RMKKLLSNGTILVGHSL-NNDLEVLKLD-----H-----P-------------R-VIDTSLIFKY------VDE--YRRP 259 (360)
Q Consensus 213 ~l~~~l~~g~iLVGHnl-~fDl~~L~~~-----~-----~-------------~-viDT~~l~~~------~~~--~~~~ 259 (360)
+|.+++..-.++||||. .||+.+|... . | + .+|....++. .+. ..++
T Consensus 263 ~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~sy 342 (847)
T 1s5j_A 263 RFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEY 342 (847)
T ss_dssp HHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSSC
T ss_pred HHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccccccccc
Confidence 99999976679999996 6899988531 0 0 1 2566655432 111 4689
Q ss_pred CHHHHHHHHhCCccCCC-CC---------CCChHHHHHHHHHHH
Q 018152 260 SLYNLCKSVLGYEIRKK-GT---------PHNCLDDASAAMKLV 293 (360)
Q Consensus 260 sL~~L~~~~Lg~~iq~~-~~---------~H~AleDA~at~eL~ 293 (360)
+|+++|+.+||..-..- .. .+-++.||..++.|+
T Consensus 343 sL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 343 NLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp SHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999998998752210 00 112567999999985
No 34
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=96.55 E-value=0.033 Score=53.11 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=98.9
Q ss_pred CCCCcEEEEEEeccCCCCCc---------------------ccEEEEEEE--EcCCcE------E--EEEeecCCCcccc
Q 018152 139 MTSNIMYAVDCEMVLCEDGS---------------------EGLVRLCVV--DRNLKV------T--IDELVKPEKAVAD 187 (360)
Q Consensus 139 ~~~~~~ValD~Ettgl~~g~---------------------~~I~~VsvV--d~~g~~------~--~d~lV~P~~~I~d 187 (360)
.+..++||+|+|++|+.... -.|+.+++- +.+|+. . |+-+.+..+.+-.
T Consensus 35 i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~d~~~ 114 (289)
T 1uoc_A 35 VSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMS 114 (289)
T ss_dssp TTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCCC
T ss_pred HhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCcccccc
Confidence 44578999999999985210 136666654 555442 2 2333333221110
Q ss_pred -cc---cccCCCCHHhhcCCCCCHHHHHHHHHH---HhhCCCEEEEEcchhhHHHHccc--------------------C
Q 018152 188 -YR---SEITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKLD--------------------H 240 (360)
Q Consensus 188 -~~---t~i~GIT~e~L~~ap~~l~eV~~~l~~---~l~~g~iLVGHnl~fDl~~L~~~--------------------~ 240 (360)
.. -+-+||.=+.....+++..+..+.+.. .++.+...|.++-.+|+.+|=.. .
T Consensus 115 ~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~F 194 (289)
T 1uoc_A 115 TESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM 194 (289)
T ss_dssp HHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhC
Confidence 00 134677766666655566554444443 23345688899999999876331 3
Q ss_pred CCccchHHHhhHhCC--------------CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 018152 241 PRVIDTSLIFKYVDE--------------YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (360)
Q Consensus 241 ~~viDT~~l~~~~~~--------------~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g 300 (360)
|.+.||-.+.+.... ..+.+|..|| +.||++.. +..|.|=.||..|+..|.++.+..
T Consensus 195 P~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA-~~L~v~r~--g~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 195 PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLA-DELGLPRF--SIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp SSEEEHHHHHHHHTTTCC-------------CCSHHHHH-HHTTCCCC--GGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred ccceeHHHHHHHHHhccCcccccccccccccCCCHHHHH-HHcCCCcc--CcccccHHHHHHHHHHHHHHHHHH
Confidence 568899888776543 1356899999 77788643 458999999999999999887654
No 35
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=96.52 E-value=0.062 Score=52.17 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=103.8
Q ss_pred CCCCcEEEEEEeccCCCCCc--------c-------------cEEEEE--EEEcCCcE-----E--EEEeecCCCccc-c
Q 018152 139 MTSNIMYAVDCEMVLCEDGS--------E-------------GLVRLC--VVDRNLKV-----T--IDELVKPEKAVA-D 187 (360)
Q Consensus 139 ~~~~~~ValD~Ettgl~~g~--------~-------------~I~~Vs--vVd~~g~~-----~--~d~lV~P~~~I~-d 187 (360)
.+..++||+|+|++|+.... + .|++++ +.+.+|+. . |+-+.+....+- .
T Consensus 42 i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~d~~~~ 121 (333)
T 2p51_A 42 IERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAP 121 (333)
T ss_dssp TTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSCCCH
T ss_pred HhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcccccCH
Confidence 45578999999999986220 0 255544 45655642 2 233333322111 0
Q ss_pred cc---cccCCCCHHhhcCCCCCHHHHHHHHHH---HhhCCCEEEEEcchhhHHHHccc--------------------CC
Q 018152 188 YR---SEITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKLD--------------------HP 241 (360)
Q Consensus 188 ~~---t~i~GIT~e~L~~ap~~l~eV~~~l~~---~l~~g~iLVGHnl~fDl~~L~~~--------------------~~ 241 (360)
.. -+-+||.=+.+...+++..+..+.+.. .+..+..+|.++-.+|+.+|=.. .|
T Consensus 122 ~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP 201 (333)
T 2p51_A 122 ESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFP 201 (333)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCc
Confidence 01 133688777777666677666655553 33345688889999999876331 35
Q ss_pred CccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 018152 242 RVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 301 (360)
Q Consensus 242 ~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g~ 301 (360)
.+.||-.|.+.... -+-+|..|+ +.||+.-. +..|.|-.||..|+..|.++.+...
T Consensus 202 ~iYD~K~l~~~~~~-l~ggL~~lA-~~L~v~Ri--g~~HqAGsDSlLT~~~F~kl~~~~f 257 (333)
T 2p51_A 202 KNYDIKYIMKSVLN-NSKGLQDIA-DDLQIHRI--GPQHQAGSDALLTARIFFEIRSRYF 257 (333)
T ss_dssp SEEEHHHHHTTTTC-CCCCHHHHH-HHTTCCCC--SCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhcc-ccCCHHHHH-HHcCCCcc--CcchhhhhHHHHHHHHHHHHHHHhc
Confidence 68899888877543 356899999 67786532 4689999999999999998887543
No 36
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=96.51 E-value=0.026 Score=56.70 Aligned_cols=131 Identities=16% Similarity=0.145 Sum_probs=81.4
Q ss_pred cEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcC-CCCCHHHHHHHHHHHhhCC
Q 018152 143 IMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVG-VTCSLAEIQKRMKKLLSNG 221 (360)
Q Consensus 143 ~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~-ap~~l~eV~~~l~~~l~~g 221 (360)
..|+||+|++....-...++-|.+-..++.. .||.| +. +.. .. . ...|..++ .+
T Consensus 39 ~~vavDtE~~~~~~~~~~l~liQla~~~~~~---~lid~---l~-------------~~~~~~-~----l~~L~~lL-~d 93 (440)
T 3cym_A 39 GSLAADAERASGFRYGHEDWLVQFKRDGAGI---GLLDP---QA-------------LAAAGA-D----WNDFNRAV-GD 93 (440)
T ss_dssp EEEEEEEEECTTTSSSCCEEEEEEEEETTEE---EEECH---HH-------------HHHTTC-C----HHHHHHHH-TT
T ss_pred CeEEEEeeecCCCCCCCCEEEEEEEECCCcE---EEEEc---CC-------------cccccc-C----HHHHHHHH-CC
Confidence 7899999998764322335444444333422 23322 00 000 01 1 34577777 56
Q ss_pred CEEEEEcchhhHHHHccc---CCCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCC-------C------CChHHH
Q 018152 222 TILVGHSLNNDLEVLKLD---HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGT-------P------HNCLDD 285 (360)
Q Consensus 222 ~iLVGHnl~fDl~~L~~~---~~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~-------~------H~AleD 285 (360)
...|||++.+|+.+|+.. ...+.||......+.+ .+++|..|++.++|.....+.. . .-|..|
T Consensus 94 ~~KV~h~~k~Dl~~L~~~gi~~~~~fDt~lAa~lL~~-~~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~D 172 (440)
T 3cym_A 94 AVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGL-KRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALD 172 (440)
T ss_dssp CEEEESSHHHHHHHHHHHTCCCCEEEEHHHHHHHTTC-SSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHcCCcCCceehHHHHHHHhCC-CCCCHHHHHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHH
Confidence 689999999999999632 2347899544444433 4899999999999976553210 1 126689
Q ss_pred HHHHHHHHHHHHHh
Q 018152 286 ASAAMKLVLAIIER 299 (360)
Q Consensus 286 A~at~eL~~~~l~~ 299 (360)
|.++.+||..+...
T Consensus 173 a~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 173 VELLIELETKMRAE 186 (440)
T ss_dssp HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876543
No 37
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=96.39 E-value=0.055 Score=59.04 Aligned_cols=153 Identities=13% Similarity=0.068 Sum_probs=100.4
Q ss_pred CcEEEEEEeccCCC------CCcccEEEEEEEEcCCcE--EEEEeecCCCcccccccc---------cCCCCHHhhcCC-
Q 018152 142 NIMYAVDCEMVLCE------DGSEGLVRLCVVDRNLKV--TIDELVKPEKAVADYRSE---------ITGLTADDLVGV- 203 (360)
Q Consensus 142 ~~~ValD~Ettgl~------~g~~~I~~VsvVd~~g~~--~~d~lV~P~~~I~d~~t~---------i~GIT~e~L~~a- 203 (360)
-+.++||+|++.-+ .+.++|+.|++.+..+.. +|+.+-.|.....++.+. -..+..+.+.+.
T Consensus 108 ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 187 (903)
T 3qex_A 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKII 187 (903)
T ss_dssp SCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred ccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCeE
Confidence 47999999997522 124579999999986654 344445454444444331 123444544443
Q ss_pred ----CCCHHHHHHHHHHHhh--CCCEEEEEcc-hhhHHHHccc------------------------------------C
Q 018152 204 ----TCSLAEIQKRMKKLLS--NGTILVGHSL-NNDLEVLKLD------------------------------------H 240 (360)
Q Consensus 204 ----p~~l~eV~~~l~~~l~--~g~iLVGHnl-~fDl~~L~~~------------------------------------~ 240 (360)
+ +-.+.+.+|.+++. .-.|++|||. .||+.+|..- +
T Consensus 188 v~~f~-sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~ 266 (903)
T 3qex_A 188 YMPFD-NEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLF 266 (903)
T ss_dssp EEEES-SHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEET
T ss_pred EEEcC-CHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEe
Confidence 3 67789999999885 3479999997 6798765210 0
Q ss_pred CC-ccchHHHhhHhC--CCCCCCHHHHHHHHhCCccCCC-CC------------CCChHHHHHHHHHHHHH
Q 018152 241 PR-VIDTSLIFKYVD--EYRRPSLYNLCKSVLGYEIRKK-GT------------PHNCLDDASAAMKLVLA 295 (360)
Q Consensus 241 ~~-viDT~~l~~~~~--~~~~~sL~~L~~~~Lg~~iq~~-~~------------~H~AleDA~at~eL~~~ 295 (360)
.+ ++|+..+.+... ...+++|+.+|+.+||..-..- .. .+-++.||..+++|+.+
T Consensus 267 GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 267 GISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp TCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 12 578888887632 3679999999999998764310 00 01136799999999976
No 38
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=96.34 E-value=0.026 Score=63.28 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=91.6
Q ss_pred CCcEEEEEEeccCC--CC--------CcccEEEEEEE-EcCC-cEEEEEee-cCCC--cccccc--cccCCCCHHhhcCC
Q 018152 141 SNIMYAVDCEMVLC--ED--------GSEGLVRLCVV-DRNL-KVTIDELV-KPEK--AVADYR--SEITGLTADDLVGV 203 (360)
Q Consensus 141 ~~~~ValD~Ettgl--~~--------g~~~I~~VsvV-d~~g-~~~~d~lV-~P~~--~I~d~~--t~i~GIT~e~L~~a 203 (360)
+.++++||+||++. ++ ..+.|+.|+.+ ...| ......+| ..+. .+.++. .+-.|+....+...
T Consensus 319 ~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~~ 398 (1193)
T 2gv9_A 319 AYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLEF 398 (1193)
T ss_dssp CCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEEE
T ss_pred CceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCCcchhhhhcccccCCCceEEec
Confidence 56899999999864 11 23579999865 3222 11222222 1111 111111 01111111123444
Q ss_pred CCCHHHHHHHHHHHhhCC--CEEEEEcc-hhhHHHHccc--------C-------------------------------C
Q 018152 204 TCSLAEIQKRMKKLLSNG--TILVGHSL-NNDLEVLKLD--------H-------------------------------P 241 (360)
Q Consensus 204 p~~l~eV~~~l~~~l~~g--~iLVGHnl-~fDl~~L~~~--------~-------------------------------~ 241 (360)
. +-.+++.+|.+++..- .||||||+ .||+.+|..- . .
T Consensus 399 ~-sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~G 477 (1193)
T 2gv9_A 399 D-SEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNG 477 (1193)
T ss_dssp S-SHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETT
T ss_pred C-CHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEcC
Confidence 5 7788999999988543 49999997 6799876421 0 0
Q ss_pred C-ccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCC-C---------C-------CCChHHHHHHHHHHHHHH
Q 018152 242 R-VIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKK-G---------T-------PHNCLDDASAAMKLVLAI 296 (360)
Q Consensus 242 ~-viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~-~---------~-------~H~AleDA~at~eL~~~~ 296 (360)
+ ++|+..+.+......+++|+.+|+.+||..-..- + + .+-++.||..++.||.++
T Consensus 478 Rv~lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 478 MVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp BEEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3677776655555789999999998998653210 0 0 122457999999998765
No 39
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.97 E-value=0.072 Score=57.34 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=87.9
Q ss_pred CCCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHh
Q 018152 139 MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLL 218 (360)
Q Consensus 139 ~~~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l 218 (360)
..+-++++||+|+.+ .| .|..|++-+..-+.++ .+=.|+..- .+..-.+...+ +-.+++.+|.+++
T Consensus 150 ~p~lrilsfDIE~~~--~g--~i~~I~~~~~~~~~v~-~l~~~~~~~--------~~~~~~V~~f~-~E~~lL~~f~~~i 215 (786)
T 3k59_A 150 RPPLKWVSIDIETTR--HG--ELYCIGLEGCGQRIVY-MLGPENGDA--------SSLDFELEYVA-SRPQLLEKLNAWF 215 (786)
T ss_dssp CCCCCEEEEEEEECT--TS--CEEEEEEEETTEEEEE-EESSCCSCC--------TTCSSEEEEES-SHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEEcC--CC--CEEEEEecCCCCCeEE-EEecCCCCC--------CCCCceEEEeC-CHHHHHHHHHHHH
Confidence 346799999999994 33 5888886543322221 111121110 01111233344 6778889998888
Q ss_pred hCC--CEEEEEcc-hhhHHHHccc---------------------------------CCC-ccchHHHhhHh-CCCCCCC
Q 018152 219 SNG--TILVGHSL-NNDLEVLKLD---------------------------------HPR-VIDTSLIFKYV-DEYRRPS 260 (360)
Q Consensus 219 ~~g--~iLVGHnl-~fDl~~L~~~---------------------------------~~~-viDT~~l~~~~-~~~~~~s 260 (360)
..- .+++|||. .||+.+|..- ..| ++|...+.+.. ....+++
T Consensus 216 ~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~Sys 295 (786)
T 3k59_A 216 ANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFS 295 (786)
T ss_dssp HHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSCCS
T ss_pred HHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCCCC
Confidence 533 49999997 5799988420 002 47777666642 3478999
Q ss_pred HHHHHHHHhCCccCCCCCCCC----------------------hHHHHHHHHHHHHHH
Q 018152 261 LYNLCKSVLGYEIRKKGTPHN----------------------CLDDASAAMKLVLAI 296 (360)
Q Consensus 261 L~~L~~~~Lg~~iq~~~~~H~----------------------AleDA~at~eL~~~~ 296 (360)
|+++|+.+||..-. .|+ ++.||..+++|+.++
T Consensus 296 L~~Va~~~Lg~~K~----~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 296 LETVAQELLGEGKS----IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HHHHHHHHHCCCCC-----CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCc----ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999986522 222 368999999998764
No 40
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=95.81 E-value=0.027 Score=56.43 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=66.4
Q ss_pred hhcCCCCCHHHHHHHHHHHhhCCCEEEEEcchhhHHHHccc-------------------CCCccchHHHhhHhC-C--C
Q 018152 199 DLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLD-------------------HPRVIDTSLIFKYVD-E--Y 256 (360)
Q Consensus 199 ~L~~ap~~l~eV~~~l~~~l~~g~iLVGHnl~fDl~~L~~~-------------------~~~viDT~~l~~~~~-~--~ 256 (360)
.+..+. .|..|.+.|.+ .+.++||||.-.|+-++-.. .|.++||=.|+.... . .
T Consensus 263 ~l~~~~-Gfr~V~~~L~~---s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~ 338 (430)
T 2a1r_A 263 ELNDAV-GFSRVIHAIAN---SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDII 338 (430)
T ss_dssp HHHTTS-BTHHHHHHHHH---HCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTC
T ss_pred HHHhhh-hHHHHHHHHHh---CCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhcc
Confidence 344554 66677766655 68999999999999876442 467999987775432 1 3
Q ss_pred CCCCHHHHHHHHhCCcc-----C----------CCCCCCChHHHHHHHHHHHHHHHHh
Q 018152 257 RRPSLYNLCKSVLGYEI-----R----------KKGTPHNCLDDASAAMKLVLAIIER 299 (360)
Q Consensus 257 ~~~sL~~L~~~~Lg~~i-----q----------~~~~~H~AleDA~at~eL~~~~l~~ 299 (360)
...+|..|....-..+. . ..+..|.|=-||..|..+|.++...
T Consensus 339 ~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~ 396 (430)
T 2a1r_A 339 NNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396 (430)
T ss_dssp SCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 45789999844322211 0 0124699999999999999987743
No 41
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.73 E-value=0.017 Score=59.04 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEEEcchhhHHHHccc-------------------CCCccchHHHhhHhC--C-CCCCCHHH
Q 018152 206 SLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLD-------------------HPRVIDTSLIFKYVD--E-YRRPSLYN 263 (360)
Q Consensus 206 ~l~eV~~~l~~~l~~g~iLVGHnl~fDl~~L~~~-------------------~~~viDT~~l~~~~~--~-~~~~sL~~ 263 (360)
.|..|++.|.+ .+.++||||.-.|+.+|-.. .|.++||-.|+.... . ....+|..
T Consensus 264 Gfr~v~~~L~~---~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~ 340 (507)
T 3d45_A 264 GFSRVIHAIAN---SGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAE 340 (507)
T ss_dssp BTHHHHHHHHH---HCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHH
T ss_pred hHHHHHHHHHh---CCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHH
Confidence 55566666554 68999999999999887542 467899988876421 1 34679999
Q ss_pred HHHHHhCCc------c----------CCCCCCCChHHHHHHHHHHHHHHHH
Q 018152 264 LCKSVLGYE------I----------RKKGTPHNCLDDASAAMKLVLAIIE 298 (360)
Q Consensus 264 L~~~~Lg~~------i----------q~~~~~H~AleDA~at~eL~~~~l~ 298 (360)
|.. .|+.. | ...+..|.|=-||..|+.+|.++..
T Consensus 341 l~~-~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~ 390 (507)
T 3d45_A 341 LEK-RLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 390 (507)
T ss_dssp HHH-HTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 994 44421 1 0013479999999999999998764
No 42
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=85.43 E-value=1.9 Score=44.55 Aligned_cols=66 Identities=14% Similarity=-0.023 Sum_probs=41.4
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhCC
Q 018152 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNG 221 (360)
Q Consensus 142 ~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~g 221 (360)
.+++++|+||+. ++.+..+..+++.+..+...+- | .. .+.+..+.+. ..+
T Consensus 6 ~~i~~~D~Et~~-d~~~~~~~~i~~~~~~~~~~~~-----------------~--------~~-~l~~fi~~~~---~~~ 55 (575)
T 2py5_A 6 RKMYSCAFETTT-KVEDCRVWAYGYMNIEDHSEYK-----------------I--------GN-SLDEFMAWVL---KVQ 55 (575)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEEESSCTTCEE-----------------E--------ES-CHHHHHHHHH---HHC
T ss_pred ceEEEEEEEeec-CCCCCceEEEEEEeCCceEEEE-----------------e--------ch-hHHHHHHHHH---HcC
Confidence 469999999975 4444468888887653321111 0 01 2344444333 246
Q ss_pred CEEEEEcchhhHHHHc
Q 018152 222 TILVGHSLNNDLEVLK 237 (360)
Q Consensus 222 ~iLVGHnl~fDl~~L~ 237 (360)
.++++||+.||..+|-
T Consensus 56 ~~i~~hNl~FD~~~l~ 71 (575)
T 2py5_A 56 ADLYFHNLKFAGAFII 71 (575)
T ss_dssp CEEEETTHHHHHHHHH
T ss_pred CEEEEEChhhhHHHHH
Confidence 7899999999998875
No 43
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=70.06 E-value=3.3 Score=37.57 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=98.9
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCC--cccccccccCCCCHHhhcCCCCCHHHHHHHHHHH
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 217 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~--~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~ 217 (360)
.+..-.+||+|-.-.++ +++++...+...-++.|=+|.. ...+..---|||--.||.++. + -+...+++.
T Consensus 55 dP~~ttWiDIEG~p~DP-----VElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aq-P--GL~S~vi~~ 126 (243)
T 3q7c_A 55 DPNAKTWMDIEGRPEDP-----VEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQ-P--GLTSAVIDA 126 (243)
T ss_dssp CTTSCCEEEEESCTTSC-----SEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBC-T--THHHHHHHH
T ss_pred CCCCCeEEecCCCCCCC-----eEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcC-C--chHHHHHHh
Confidence 34556689999775444 6788988754447889989965 444555567999999999987 3 577888999
Q ss_pred hhCCCEEEEEcchhhHHHH-cccCCC---ccchH------HHhhHhCCCCCCCHHHHHHHHhCCccCCC-------CCCC
Q 018152 218 LSNGTILVGHSLNNDLEVL-KLDHPR---VIDTS------LIFKYVDEYRRPSLYNLCKSVLGYEIRKK-------GTPH 280 (360)
Q Consensus 218 l~~g~iLVGHnl~fDl~~L-~~~~~~---viDT~------~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~-------~~~H 280 (360)
|+.+-||-..+.. |++-| .+...+ +||.. +.|... -+-..+.||+.+-|+-+... ...|
T Consensus 127 LP~nMVlT~QGsD-DIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~---VWd~f~~LC~~H~GvVv~KKKkg~~~s~~PH 202 (243)
T 3q7c_A 127 LPRNMVITCQGSD-DIRKLLESQGRKDIKLIDIALSKTDSRKYENA---VWDQYKDLCHMHTGVVVEKKKRGGKEEITPH 202 (243)
T ss_dssp SCTTCEEEESSHH-HHHHHHHHTTCTTSEEEECCCCHHHHTTTHHH---HHHHHGGGCCCBCSCEECCCSSSSCCEECCC
T ss_pred CCcCcEEEeeChH-HHHHHHHhcCCccceEEEeecCHHHHHHHHHH---HHHHHHHHHHhcCceEEeccccCCCCCCCch
Confidence 9888888887765 55544 444333 68863 233221 22345567877777766421 2479
Q ss_pred ChHHHHHHHHHHHHHHHHhccc
Q 018152 281 NCLDDASAAMKLVLAIIERRVD 302 (360)
Q Consensus 281 ~AleDA~at~eL~~~~l~~g~~ 302 (360)
.||-|+.. |.+.+.++..
T Consensus 203 CALLDCIM----F~aa~~G~~~ 220 (243)
T 3q7c_A 203 CALMDCIM----FDAAVSGGLN 220 (243)
T ss_dssp CHHHHHHH----HHHHHHTSCC
T ss_pred HHHHHHHH----HHHHhcCCCC
Confidence 99999874 7766765543
No 44
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=60.18 E-value=6.1 Score=39.62 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=97.1
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCC--cccccccccCCCCHHhhcCCCCCHHHHHHHHHHH
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 217 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~--~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~ 217 (360)
.+..-.+||+|-.-.++ +++++...+....+|.|=+|.. ...+...--|||--.||.++. + -+...+.+.
T Consensus 389 dp~~ttWiDIEG~p~DP-----VE~AiyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aq-P--GL~S~vi~~ 460 (577)
T 3mwp_A 389 DPNAKTWMDIEGRPEDP-----VEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQ-P--GLTSAVIDA 460 (577)
T ss_dssp CTTSCEEEEEESCTTSC-----SEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBC-T--THHHHHHHH
T ss_pred CCCCCeEEecCCCCCCC-----eEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcC-C--chHHHHHHh
Confidence 34556788988765443 6788888754447899999975 444555567999999999987 3 577888999
Q ss_pred hhCCCEEEEEcchhhHHHHcccCCC----ccchH------HHhhHhCCCCCCCHHHHHHHHhCCccCCC-------CCCC
Q 018152 218 LSNGTILVGHSLNNDLEVLKLDHPR----VIDTS------LIFKYVDEYRRPSLYNLCKSVLGYEIRKK-------GTPH 280 (360)
Q Consensus 218 l~~g~iLVGHnl~fDl~~L~~~~~~----viDT~------~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~-------~~~H 280 (360)
++.+-||-..+.. |++-|=..|.| +||.. +.|... -.-..+.||+.+-|+-+... ...|
T Consensus 461 LP~~mV~T~QGsd-DI~kLld~hGR~DiK~iDV~lt~eqaR~fEd~---VW~~~~~LC~~H~GiVv~kKKkg~~~~~~pH 536 (577)
T 3mwp_A 461 LPRNMVITCQGSD-DIRKLLESQGRKDIKLIDIALSKTDSRKYENA---VWDQYKDLCHMHTGVVVEKKKRGGKEEITPH 536 (577)
T ss_dssp SCTTCEEEESSHH-HHHHHHHHTTCTTCEEEECCCCHHHHTTTHHH---HHHHHGGGCCCBCSCEEECC-----EEECCC
T ss_pred CCcCcEEEeeChH-HHHHHHHhcCCccceEEEeecCHHHHHHHHHH---HHHHHHHHHHhcCceEEecccCCCCCCCCch
Confidence 9888888877765 55544444433 68863 233221 22344567777777665421 2479
Q ss_pred ChHHHHHHHHHHHHHHHHhcc
Q 018152 281 NCLDDASAAMKLVLAIIERRV 301 (360)
Q Consensus 281 ~AleDA~at~eL~~~~l~~g~ 301 (360)
.|+-|+.. |...+.+..
T Consensus 537 CALlDCiM----F~a~~~G~~ 553 (577)
T 3mwp_A 537 CALMDCIM----FDAAVSGGL 553 (577)
T ss_dssp CHHHHHHH----HHHHHHTCC
T ss_pred HHHHHHHH----HHHHhcCCC
Confidence 99999874 666665544
No 45
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=53.22 E-value=2.6 Score=46.72 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCCEEEEEcchhhHHHHcccC------CCccchHHH
Q 018152 220 NGTILVGHSLNNDLEVLKLDH------PRVIDTSLI 249 (360)
Q Consensus 220 ~g~iLVGHnl~fDl~~L~~~~------~~viDT~~l 249 (360)
..+|+||||+.||...++.+. -+.+||+.|
T Consensus 193 ~~rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSL 228 (1172)
T 3ikm_A 193 QEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSM 228 (1172)
T ss_dssp SCCCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHH
T ss_pred CccEEEeCCcchhHHHHHHHHhcccCCceeeechhh
Confidence 469999999999998887753 258999754
No 46
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=37.61 E-value=43 Score=36.07 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=54.4
Q ss_pred HHHHHHhhCCCEEEEEcchhhHHHHccc---CCCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCCCChHHHHHH
Q 018152 212 KRMKKLLSNGTILVGHSLNNDLEVLKLD---HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASA 288 (360)
Q Consensus 212 ~~l~~~l~~g~iLVGHnl~fDl~~L~~~---~~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~a 288 (360)
+.|..++....+ |+.+|+.+|... ...+.||......+.+. .++|+.|+++| |.. +. .. -+ +||.+
T Consensus 340 ~~Lk~lLed~~i----n~K~d~~~L~~~Gi~~~~~~Dt~laayLl~p~-~~~l~~l~~~~-gk~-~~--~~-ya-~da~~ 408 (832)
T 1bgx_T 340 KALRDLKEARGL----LAKDLSVLALREGLGLPPGDDPMLLAYLLDPS-NTTPEGVARRY-GGE-WT--EE-AG-ERAAL 408 (832)
T ss_dssp HHHHHCSSBCBT----THHHHHHHHHHHTCCCCBCCCHHHHHHHHCTT-CCSTTHHHHHH-SCC-CC--SS-HH-HHHHH
T ss_pred HHHHHHHhCCCC----ChHHHHHHHHHcCCccCcccCHHHHHHHcCCC-CCCHHHHHHHh-CCC-ch--HH-HH-HHHHH
Confidence 457777733334 999999999653 33457999888777766 88999999877 542 11 11 23 79999
Q ss_pred HHHHHHHHHHh
Q 018152 289 AMKLVLAIIER 299 (360)
Q Consensus 289 t~eL~~~~l~~ 299 (360)
+.+|+..+...
T Consensus 409 ~~~l~~~l~~~ 419 (832)
T 1bgx_T 409 SERLFANLWGR 419 (832)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999876543
No 47
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=31.68 E-value=31 Score=27.30 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=16.9
Q ss_pred hhccCCCCCCCCHHHHhccCCC
Q 018152 319 RLFLHRIPTKVPSEELHGVIPG 340 (360)
Q Consensus 319 ~l~~h~ip~~~~~eel~~~~~~ 340 (360)
|+-..+||++++++++.+.++.
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~ 32 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRP 32 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSC
T ss_pred eEEEeCCCCCCCHHHHHHHhCC
Confidence 4556788999999998877743
No 48
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.38 E-value=31 Score=25.82 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=29.1
Q ss_pred hhccCCCCCCCCHHHHhccCCCCCccccccc-------eeEEEeccC
Q 018152 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKVD-------YFLILSFGH 358 (360)
Q Consensus 319 ~l~~h~ip~~~~~eel~~~~~~~~~~~~~~~-------~~~~~~~~~ 358 (360)
.++...||..++.++|.++|++-..+.+-.+ -.++|.|.+
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~ 63 (102)
T 2fc8_A 17 TLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNS 63 (102)
T ss_dssp SEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSS
T ss_pred EEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECC
Confidence 6788999999999999999997433332222 267777764
No 49
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=26.34 E-value=29 Score=34.30 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=12.6
Q ss_pred CcEEEEEEeccCCC
Q 018152 142 NIMYAVDCEMVLCE 155 (360)
Q Consensus 142 ~~~ValD~Ettgl~ 155 (360)
.++||||+|++|+.
T Consensus 22 ~~fVAiD~Ef~Gi~ 35 (430)
T 2a1r_A 22 ADFFAIDGEFSGIS 35 (430)
T ss_dssp CSEEEEEEEESCSC
T ss_pred CCEEEEeeeecccc
Confidence 47999999999985
No 50
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=23.25 E-value=32 Score=34.75 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=13.0
Q ss_pred CCcEEEEEEeccCCC
Q 018152 141 SNIMYAVDCEMVLCE 155 (360)
Q Consensus 141 ~~~~ValD~Ettgl~ 155 (360)
..++||||+|++|+.
T Consensus 23 ~~~fvaiD~Ef~Gi~ 37 (507)
T 3d45_A 23 EADFFAIDGEFSGIS 37 (507)
T ss_dssp HCSEEEEEEEESCSC
T ss_pred cCCEEEEeeeccCcC
Confidence 357999999999985
Done!