Query 018152
Match_columns 360
No_of_seqs 274 out of 1386
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 10:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018152.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018152hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wlja_ c.55.3.5 (A:) Interfer 100.0 2.2E-33 1.6E-37 243.8 16.7 153 143-297 1-161 (173)
2 d2guia1 c.55.3.5 (A:7-180) N-t 99.9 2.7E-26 2E-30 197.2 16.3 151 143-297 1-173 (174)
3 d3b6oa1 c.55.3.5 (A:9-234) Thr 99.9 7.7E-25 5.6E-29 198.4 11.6 154 142-298 4-205 (226)
4 d1y97a1 c.55.3.5 (A:1-228) Thr 99.9 2.9E-23 2.1E-27 187.9 13.6 159 137-298 3-206 (228)
5 d1w0ha_ c.55.3.5 (A:) Exonucle 99.8 2.5E-21 1.8E-25 170.4 10.4 158 142-303 6-194 (200)
6 d2f96a1 c.55.3.5 (A:19-220) Ri 99.7 2.7E-18 2E-22 149.2 8.7 153 145-301 14-196 (202)
7 d2qxfa1 c.55.3.5 (A:8-474) Exo 99.7 6.6E-18 4.8E-22 167.7 10.9 155 142-300 2-194 (467)
8 d2igia1 c.55.3.5 (A:1-180) Oli 99.5 2.1E-14 1.5E-18 122.2 10.7 149 140-299 3-176 (180)
9 d1kfsa1 c.55.3.5 (A:324-518) E 98.8 3.9E-08 2.9E-12 84.2 15.7 141 142-298 26-191 (195)
10 d1yt3a3 c.55.3.5 (A:1-193) Rib 98.7 4.3E-08 3.1E-12 86.0 13.0 132 141-300 21-170 (193)
11 d2hbka2 c.55.3.5 (A:129-420) E 98.3 2.6E-06 1.9E-10 79.5 12.3 132 140-299 102-251 (292)
12 d1x9ma1 c.55.3.5 (A:1-210) Exo 98.3 9.2E-07 6.7E-11 76.3 8.7 69 144-238 1-71 (204)
13 d2d5ra1 c.55.3.9 (A:11-262) CC 98.3 6.4E-06 4.6E-10 75.2 14.1 157 142-302 24-237 (252)
14 d2hhva1 c.55.3.5 (A:298-468) E 98.2 3.1E-06 2.2E-10 72.6 10.2 128 143-298 17-166 (171)
15 d1vk0a_ c.55.3.5 (A:) Hypothet 97.9 1.3E-05 9.4E-10 70.7 9.3 86 212-297 98-204 (206)
16 d1tgoa1 c.55.3.5 (A:1-347) Exo 97.4 0.00048 3.5E-08 64.3 11.9 117 141-273 134-287 (347)
17 d1uoca_ c.55.3.9 (A:) Pop2 RNa 96.6 0.011 8.1E-07 54.0 13.2 157 139-298 32-260 (286)
18 d1s5ja1 c.55.3.5 (A:40-449) Ex 96.3 0.025 1.9E-06 53.6 13.7 148 141-294 185-383 (410)
19 d1q8ia1 c.55.3.5 (A:2-389) Exo 95.9 0.069 5E-06 50.2 14.8 141 140-295 147-344 (388)
20 d1noya_ c.55.3.5 (A:) Exonucle 93.6 0.76 5.6E-05 41.7 15.1 153 142-295 105-333 (372)
21 d1ih7a1 c.55.3.5 (A:1-375) Exo 92.8 1.4 0.0001 40.0 15.6 131 142-273 108-302 (375)
22 d2py5a1 c.55.3.5 (A:5-187) Exo 85.8 1.4 0.0001 37.0 8.4 20 218-237 48-67 (183)
23 d2msta_ d.58.7.1 (A:) Neural R 27.1 11 0.00081 25.2 1.4 40 319-358 1-50 (75)
24 d1wg4a_ d.58.7.1 (A:) Splicing 25.5 12 0.00085 27.1 1.4 40 319-358 17-59 (98)
No 1
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.2e-33 Score=243.81 Aligned_cols=153 Identities=31% Similarity=0.444 Sum_probs=135.5
Q ss_pred cEEEEEEeccCCCCCcccE-EEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhCC
Q 018152 143 IMYAVDCEMVLCEDGSEGL-VRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNG 221 (360)
Q Consensus 143 ~~ValD~Ettgl~~g~~~I-~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~g 221 (360)
.+|||||||||++++.+++ ..+++|+.+|.+++|+||+|..+|+++++++||||++|+.+++ ++++++++|.+++ ++
T Consensus 1 ~~v~iD~EttGl~~~~~~ii~~~~iv~~~g~~i~~~~v~p~~~i~~~~~~i~GIt~e~~~~~~-~~~~~~~~~~~~~-~~ 78 (173)
T d1wlja_ 1 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT-PFAVARLEILQLL-KG 78 (173)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCE-EHHHHHHHHHHHH-TT
T ss_pred CEEEEEEEcCCCCCCCCcEEEEEEEEEecCeEEEEEeeecccccCcceeEEecCcchhhhcCC-cHHHHHHHHHhhc-cc
Confidence 4899999999999887765 4689999999999999999999999999999999999999999 9999999999999 89
Q ss_pred CEEEEEcchhhHHHHcccCCC------ccchHHHhhHhCC-CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHH
Q 018152 222 TILVGHSLNNDLEVLKLDHPR------VIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 294 (360)
Q Consensus 222 ~iLVGHnl~fDl~~L~~~~~~------viDT~~l~~~~~~-~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~ 294 (360)
.++||||+.||++||+...++ .+||..+++...+ .++++|+.||+.+++.+++.++.+|+|++||++|++||+
T Consensus 79 ~~lv~hn~~fD~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~i~~~~~~H~Al~Da~at~~l~~ 158 (173)
T d1wlja_ 79 KLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQ 158 (173)
T ss_dssp SEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHH
T ss_pred ceEEeechHhHHHHHHHhhccCcccchhHHHHHHHHHhhcccCCcCHHHHHHHHhCCcccCCCCCCChHHHHHHHHHHHH
Confidence 999999999999999998664 5788888888777 678999999999999998765568999999999999997
Q ss_pred HHH
Q 018152 295 AII 297 (360)
Q Consensus 295 ~~l 297 (360)
.+.
T Consensus 159 ~~~ 161 (173)
T d1wlja_ 159 ISQ 161 (173)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 2
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=2.7e-26 Score=197.21 Aligned_cols=151 Identities=21% Similarity=0.281 Sum_probs=130.3
Q ss_pred cEEEEEEeccCCCCC-----cccEEEEEEEEc-CCcE---EEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHH
Q 018152 143 IMYAVDCEMVLCEDG-----SEGLVRLCVVDR-NLKV---TIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKR 213 (360)
Q Consensus 143 ~~ValD~Ettgl~~g-----~~~I~~VsvVd~-~g~~---~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~ 213 (360)
++|+||+||||+++. .++|++|++|.. ++.. .|+.||+|..+|++..+++||||++++.++| ++.++..+
T Consensus 1 r~vv~D~ETTGl~~~~~~~~~d~IIeIg~v~~~~~~~~~~~~~~~v~P~~~i~~~~~~i~gIt~e~~~~~~-~~~~~~~~ 79 (174)
T d2guia1 1 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKP-TFAEVADE 79 (174)
T ss_dssp EEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSC-CHHHHHHH
T ss_pred CEEEEEeeCCCCCcccccCCCCEEEEEEEEEEECCEEeeeEEEEEeccCccchhhhhhccccchhhhhcch-hHHHHHHH
Confidence 589999999999863 347999999975 3332 3999999999999999999999999999999 99999999
Q ss_pred HHHHhhCCCEEEEEcchhhHHHHcccC-------------CCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCCC
Q 018152 214 MKKLLSNGTILVGHSLNNDLEVLKLDH-------------PRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPH 280 (360)
Q Consensus 214 l~~~l~~g~iLVGHnl~fDl~~L~~~~-------------~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~H 280 (360)
|.+++ +++.+||||..+|+.++.... .+.+|+..+++...+..+++|..+| .++|++... +.+|
T Consensus 80 ~~~~~-~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~L~~l~-~~~~~~~~~-~~~H 156 (174)
T d2guia1 80 FMDYI-RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALC-ARYEIDNSK-RTLH 156 (174)
T ss_dssp HHHHH-TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHH-HHTTCCCTT-CSSC
T ss_pred HHHhc-CCCeEEEeecchhhHHHHHHHHHhCCCCCCcccccchhhHHHHHHHHcCCCCCCHHHHH-HHcCCCCCC-CCCc
Confidence 99999 899999999999999987641 1257999999998887788999999 556877643 3489
Q ss_pred ChHHHHHHHHHHHHHHH
Q 018152 281 NCLDDASAAMKLVLAII 297 (360)
Q Consensus 281 ~AleDA~at~eL~~~~l 297 (360)
+|+.||.+|+++|.+++
T Consensus 157 ~Al~Da~~ta~v~~~l~ 173 (174)
T d2guia1 157 GALLDAQILAEVYLAMT 173 (174)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 99999999999999875
No 3
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.91 E-value=7.7e-25 Score=198.43 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=123.8
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcC----------------------CcEEEEEeecCCCcccccccccCCCCHHh
Q 018152 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRN----------------------LKVTIDELVKPEKAVADYRSEITGLTADD 199 (360)
Q Consensus 142 ~~~ValD~Ettgl~~g~~~I~~VsvVd~~----------------------g~~~~d~lV~P~~~I~d~~t~i~GIT~e~ 199 (360)
..+|+||+||||+++..++|++|++|..+ ....++.+|+|+.+|+++++++||||++|
T Consensus 4 ~~~v~~D~ETTGl~~~~~~Iieia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~P~~~I~~~~~~i~GIt~~~ 83 (226)
T d3b6oa1 4 QTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKAE 83 (226)
T ss_dssp CEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred CeEEEEEEECCCCCCCCCceEEEEEEEEeCCcccccccccccccccccccceeceeeeeECCCCCCCHHHHHhcCCCHHH
Confidence 46999999999999888889999988531 12348999999999999999999999999
Q ss_pred hcCCCC--C---HHHHHHHHHHHhhCCCEEEEEcc-hhhHHHHcccC-------C----CccchHHHhhHhCC-------
Q 018152 200 LVGVTC--S---LAEIQKRMKKLLSNGTILVGHSL-NNDLEVLKLDH-------P----RVIDTSLIFKYVDE------- 255 (360)
Q Consensus 200 L~~ap~--~---l~eV~~~l~~~l~~g~iLVGHnl-~fDl~~L~~~~-------~----~viDT~~l~~~~~~------- 255 (360)
+.+++. . +.+++..+.+.+.++.++||||. .||+.+|+.+. + .++||+.+++...+
T Consensus 84 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~lVahN~~~FD~~~l~~~~~r~~~~~~~~~~~~iDtl~l~~~~~~~~~~~~~ 163 (226)
T d3b6oa1 84 LEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGN 163 (226)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTC------
T ss_pred HHhcccchhHHHHHHHHHHHHHhccCCceEEEechhHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHhccccccccc
Confidence 998752 1 45566666666656678999995 89999998641 1 25999998876532
Q ss_pred --CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHH
Q 018152 256 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIE 298 (360)
Q Consensus 256 --~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~ 298 (360)
..+++|..||+.++|++.. .+|+|+.||++|++|++++.+
T Consensus 164 ~~~~~~~L~~l~~~~~g~~~~---~aH~Al~D~~~~~~l~~~~~~ 205 (226)
T d3b6oa1 164 GSRKSYSLGSIYTRLYWQAPT---DSHTAEGDVLTLLSICQWKPQ 205 (226)
T ss_dssp ---CCCSHHHHHHHHHSSCCS---STTSHHHHHHHHHHHHTSSHH
T ss_pred ccccCcchHHHHHHHcCCCCC---CCcChHHHHHHHHHHHHHHHH
Confidence 3568999999888898864 489999999999999987664
No 4
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.89 E-value=2.9e-23 Score=187.91 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=120.6
Q ss_pred CCCCCCcEEEEEEeccCCCCCcccEEEEEEEEcCC-------------------cEEEEEeecCCCcccccccccCCCCH
Q 018152 137 KTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNL-------------------KVTIDELVKPEKAVADYRSEITGLTA 197 (360)
Q Consensus 137 ~~~~~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g-------------------~~~~d~lV~P~~~I~d~~t~i~GIT~ 197 (360)
+.+....+|+|||||||++...++|++|++|..++ ...++.||+|+.+|+++++++||||+
T Consensus 3 ~~~~~~~~v~~D~ETTGl~~~~~~Iieia~i~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~v~P~~~i~~~~~~itGIt~ 82 (228)
T d1y97a1 3 EAPRAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSS 82 (228)
T ss_dssp SSCCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred CCCCCCEEEEEEEecCCcCCCCCCeEEEEEEEEECCccccccccccccccccceecceeeEECCCCCCCHHHHHhcCCCH
Confidence 34556789999999999998888899999986421 23489999999999999999999999
Q ss_pred HhhcCCCC-CHH----HHHHHHHHHhhCCCEEEEEc-chhhHHHHccc-------CC---CccchHHHhhHhCC------
Q 018152 198 DDLVGVTC-SLA----EIQKRMKKLLSNGTILVGHS-LNNDLEVLKLD-------HP---RVIDTSLIFKYVDE------ 255 (360)
Q Consensus 198 e~L~~ap~-~l~----eV~~~l~~~l~~g~iLVGHn-l~fDl~~L~~~-------~~---~viDT~~l~~~~~~------ 255 (360)
++|.+++. ++. ++...+.....++.++|||| ..||+.+|+.. .+ ..+||..+++....
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~n~~~fD~~~l~~~l~r~~~~~~~~~~~iDtl~~~r~l~~~~~~~~ 162 (228)
T d1y97a1 83 EGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGT 162 (228)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----
T ss_pred HHHHhccCcchHHHHHHHHHHHhhhccCCceEEeechHHHhHHHHHHHHHHcCCCCCCCcchhhHHHHHHHhhhhccccc
Confidence 99998762 222 33444444444678999999 58999999864 22 26899988865421
Q ss_pred ----CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHH
Q 018152 256 ----YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIE 298 (360)
Q Consensus 256 ----~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~ 298 (360)
..+++|..||++++|.+.. .+|+|+.||++|++||+++..
T Consensus 163 ~~~~~~~~~L~~l~~~~~~~~~~---~aH~Al~Da~at~~l~~~~~~ 206 (228)
T d1y97a1 163 RARGRQGYSLGSLFHRYFRAEPS---AAHSAEGDVHTLLLIFLHRAA 206 (228)
T ss_dssp ------CCSHHHHHHHHHSSCCC------CHHHHHHHHHHHHHHTHH
T ss_pred ccCcCCCcCHHHHHHHhcCCCCC---CCCCHHHHHHHHHHHHHHHHH
Confidence 3467999999888887764 489999999999999987654
No 5
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.84 E-value=2.5e-21 Score=170.42 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=123.3
Q ss_pred CcEEEEEEeccCCC----CCcccEEEEEEEEc---CCcE--EEEEeecCC--CcccccccccCCCCHHhhcCCCCCHHHH
Q 018152 142 NIMYAVDCEMVLCE----DGSEGLVRLCVVDR---NLKV--TIDELVKPE--KAVADYRSEITGLTADDLVGVTCSLAEI 210 (360)
Q Consensus 142 ~~~ValD~Ettgl~----~g~~~I~~VsvVd~---~g~~--~~d~lV~P~--~~I~d~~t~i~GIT~e~L~~ap~~l~eV 210 (360)
..+|+||+||||.. +...+|++|++|.. ++.+ .++.+|+|. .+|+++++++||||+++|.+++ ++.++
T Consensus 6 ~~~iv~D~EtT~~~~~~~~~~~~Iieigav~~d~~~~~~~~~f~~~v~P~~~~~i~~~~~~itgit~e~l~~~~-~~~~~ 84 (200)
T d1w0ha_ 6 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQV 84 (200)
T ss_dssp SEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CHHHH
T ss_pred CEEEEEEEecCCCCCCCCCCCCcEEEEEEEEEECCCCeEEEEEEEEEecCccccCCHHHHHHHCCCHHHhhhhh-hhHhH
Confidence 46999999999443 44457999998853 3443 389999995 4899999999999999999999 99999
Q ss_pred HHHHHHHhhC------CCEEEEEcchh-hHHHHccc-------CC----CccchHHHhhHhCC--CCCCCHHHHHHHHhC
Q 018152 211 QKRMKKLLSN------GTILVGHSLNN-DLEVLKLD-------HP----RVIDTSLIFKYVDE--YRRPSLYNLCKSVLG 270 (360)
Q Consensus 211 ~~~l~~~l~~------g~iLVGHnl~f-Dl~~L~~~-------~~----~viDT~~l~~~~~~--~~~~sL~~L~~~~Lg 270 (360)
++++.+++.. ...++++|..+ |..+|+.. .+ +.+|+..++....+ ..+.+|..|| .++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~~~~~~~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~L~~l~-~~~g 163 (200)
T d1w0ha_ 85 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLG 163 (200)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH-HHTT
T ss_pred HHHHHHHhcCCcEEeeeeeeeccchhhhHHHHHHHHHHhccCCCcccccceeeHHhHhhhhccccccchHHHHHH-HHcC
Confidence 9999998842 23444555555 45677763 22 26899888776654 4567999999 6779
Q ss_pred CccCCCCCCCChHHHHHHHHHHHHHHHHhcccC
Q 018152 271 YEIRKKGTPHNCLDDASAAMKLVLAIIERRVDN 303 (360)
Q Consensus 271 ~~iq~~~~~H~AleDA~at~eL~~~~l~~g~~~ 303 (360)
++.. +.+|+|+.||+++++|+.+++++|.+.
T Consensus 164 i~~~--~~aH~Al~Da~~~a~v~~~ll~~g~~~ 194 (200)
T d1w0ha_ 164 MDYD--GRPHCGLDDSKNIARIAVRMLQDGCEL 194 (200)
T ss_dssp CCCC--SCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCC--CCCcChHHHHHHHHHHHHHHHHcCCCC
Confidence 8875 348999999999999999999888754
No 6
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.73 E-value=2.7e-18 Score=149.18 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=112.1
Q ss_pred EEEEEeccCCCCCcccEEEEEEEEc----CCcEE------EEEeecCCCcccccccccCCCCHHhhcCCCCCHH----HH
Q 018152 145 YAVDCEMVLCEDGSEGLVRLCVVDR----NLKVT------IDELVKPEKAVADYRSEITGLTADDLVGVTCSLA----EI 210 (360)
Q Consensus 145 ValD~Ettgl~~g~~~I~~VsvVd~----~g~~~------~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~----eV 210 (360)
|+||+||||+++..++|++|++|.. .+... +...++|..++++..+++||||++++..++.... ++
T Consensus 14 Vv~D~ETTGl~~~~~~IIeigav~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~git~~~~~~~~~~~~~~~~~~ 93 (202)
T d2f96a1 14 VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTEI 93 (202)
T ss_dssp EEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHHH
T ss_pred EEEEEeCCCCCCCCCceEEEEEEEEEecccCceecceeEEEeeccCccccCCHHHHHhcCCcHHHHHhcccchhHHHHHH
Confidence 8999999999998889999998853 23222 2234466779999999999999999998875443 44
Q ss_pred HHHHHHHhh----CCCEEEEEcchhhHHHHcccC-------CC--ccchH---HHhhHhCCCCCCCHHHHHHHHhCCccC
Q 018152 211 QKRMKKLLS----NGTILVGHSLNNDLEVLKLDH-------PR--VIDTS---LIFKYVDEYRRPSLYNLCKSVLGYEIR 274 (360)
Q Consensus 211 ~~~l~~~l~----~g~iLVGHnl~fDl~~L~~~~-------~~--viDT~---~l~~~~~~~~~~sL~~L~~~~Lg~~iq 274 (360)
...+..++. ...++++|+..+|..+++... +. ..|+. .+.+.. ....+|..+| .++|+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~~~-~~~gi~~~ 170 (202)
T d2f96a1 94 FRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLA--YGQTVLAKAC-QAAGMEFD 170 (202)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHH--HSCCSHHHHH-HHTTCCCC
T ss_pred HHHHHHHHHhhcccccceeeeehhhhHHHHHHHHHHhCCCcCCCcccchhhhhhhhhcc--cCCcCHHHHH-HHcCCCCC
Confidence 444444442 456899999999999997641 11 23333 333332 4678999999 67798865
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcc
Q 018152 275 KKGTPHNCLDDASAAMKLVLAIIERRV 301 (360)
Q Consensus 275 ~~~~~H~AleDA~at~eL~~~~l~~g~ 301 (360)
. ..+|+|+.||.+|++||.+++++..
T Consensus 171 ~-~~aH~Al~Da~~ta~i~~~l~~~~~ 196 (202)
T d2f96a1 171 N-REAHSARYDTEKTAELFCGIVNRWK 196 (202)
T ss_dssp T-TSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3 3589999999999999998876543
No 7
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}
Probab=99.72 E-value=6.6e-18 Score=167.70 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=115.4
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEE--cCCcEE--EEE-eecC--CCcccccccccCCCCHHhhcCCCCCHHHHHHHH
Q 018152 142 NIMYAVDCEMVLCEDGSEGLVRLCVVD--RNLKVT--IDE-LVKP--EKAVADYRSEITGLTADDLVGVTCSLAEIQKRM 214 (360)
Q Consensus 142 ~~~ValD~Ettgl~~g~~~I~~VsvVd--~~g~~~--~d~-lV~P--~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l 214 (360)
+.||++|+||||+++..++|++|++|. .+|+++ ++. +++| .....+.++.+||||+++|.++|.+..++++.+
T Consensus 2 ~~fv~~D~ETtG~~~~~d~ii~~~ai~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~~~~i 81 (467)
T d2qxfa1 2 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARI 81 (467)
T ss_dssp CEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHHH
T ss_pred CeEEEEEEECCCcCCCCCcEEEEEEEEECCCCcEEeEEEEEeecCCCCCCCCHHHHHHhCcCHHHHHcCCCCHHHHHHHH
Confidence 579999999999999989999999984 455543 444 4554 333345788999999999999887889999999
Q ss_pred HHHhh-CCCEEEEEc-chhhHHHHcccC-----C----------CccchHHHhhHh--------------CCCCCCCHHH
Q 018152 215 KKLLS-NGTILVGHS-LNNDLEVLKLDH-----P----------RVIDTSLIFKYV--------------DEYRRPSLYN 263 (360)
Q Consensus 215 ~~~l~-~g~iLVGHn-l~fDl~~L~~~~-----~----------~viDT~~l~~~~--------------~~~~~~sL~~ 263 (360)
.+++. .++++|||| +.||..||+... + ..+|+..+.+.. .+...++|..
T Consensus 82 ~~~~~~~~~~~v~~n~~~FD~~fl~~~~~r~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~kL~~ 161 (467)
T d2qxfa1 82 HSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEH 161 (467)
T ss_dssp HHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHH
T ss_pred HHHHhcCCCcEEEEecchhhHHHHHHHHHHhcccchhhcccccccchhhhhhhhhccccCCchhhhhhccccchhhhHHH
Confidence 99984 256667775 799999998742 1 136776655421 1145789999
Q ss_pred HHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 018152 264 LCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (360)
Q Consensus 264 L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g 300 (360)
|| ..+|++.. .+|+|++||.+|++|++.+.++.
T Consensus 162 la-~~~gi~~~---~aH~Al~D~~~t~~l~~~i~~~~ 194 (467)
T d2qxfa1 162 LT-KANGIEHS---NAHDAMADVYATIAMAKLVKTRQ 194 (467)
T ss_dssp HH-HHTTCCCC------CTTHHHHHHHHHHHHHHHHS
T ss_pred HH-HHhCCCcc---ccccccCCHHHHHHHHHHhhhhh
Confidence 99 56687754 49999999999999998766544
No 8
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]}
Probab=99.52 E-value=2.1e-14 Score=122.20 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=104.1
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcC--CcEE---EEEeecCCC-------cccccccccCCCCHHhhcCCCCCH
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRN--LKVT---IDELVKPEK-------AVADYRSEITGLTADDLVGVTCSL 207 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~~--g~~~---~d~lV~P~~-------~I~d~~t~i~GIT~e~L~~ap~~l 207 (360)
....+|++|+||||+++..++|++|++|..+ +... ....++|.. .+.......+++...+....+ ..
T Consensus 3 ~~~~lv~lD~ETTGLdp~~d~IIeIaaV~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 81 (180)
T d2igia1 3 NENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTM-GD 81 (180)
T ss_dssp GGGCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCC-CH
T ss_pred CCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCceEeeccceeeeeccccccccccccccccccccchhhhhccccc-cH
Confidence 3568999999999999999999999999753 3322 233444432 222234456777888888887 88
Q ss_pred HHHHHHHHHHhh-----CCCEEEEEcchhhHHHHccc--------CCCccchHHHhhHhCCCCCCCHHHHHHHHhCCccC
Q 018152 208 AEIQKRMKKLLS-----NGTILVGHSLNNDLEVLKLD--------HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIR 274 (360)
Q Consensus 208 ~eV~~~l~~~l~-----~g~iLVGHnl~fDl~~L~~~--------~~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq 274 (360)
+.+...+..+.. +..+++|||..||+.+|... +.+.+|+..+++.... .....+.|++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~FD~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~~-------~~~~~~~~~~~~ 154 (180)
T d2igia1 82 REAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARR-------WKPEILDGFTKQ 154 (180)
T ss_dssp HHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHH-------HCGGGGGGSCCC
T ss_pred HHHHHHHHHHHhhhccCCCcEEEechhcchhHHHHHHhhhhcccCCCcEEeehhhHHHHhh-------cChHHhcCCCCC
Confidence 887777766652 34688999999999999864 3457898877665421 001123355543
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHh
Q 018152 275 KKGTPHNCLDDASAAMKLVLAIIER 299 (360)
Q Consensus 275 ~~~~~H~AleDA~at~eL~~~~l~~ 299 (360)
.+|+|++||++|.++++.+.++
T Consensus 155 ---~aH~Al~Dv~~ti~~l~~yr~~ 176 (180)
T d2igia1 155 ---GTHQAMDDIRESVAELAYYREH 176 (180)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcccHHHHHHHHHHHHHHHHH
Confidence 4899999999999988877654
No 9
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}
Probab=98.84 E-value=3.9e-08 Score=84.22 Aligned_cols=141 Identities=19% Similarity=0.137 Sum_probs=100.9
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhCC
Q 018152 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNG 221 (360)
Q Consensus 142 ~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~g 221 (360)
.+.+|||+||||+++-...++.+++-...+...+..+......... . ....++.+.+..++...
T Consensus 26 ~~~~a~DtEt~~l~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~l~~l~~~le~~ 89 (195)
T d1kfsa1 26 APVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPD---------------Q-ISRERALELLKPLLEDE 89 (195)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCC---------------C-CCHHHHHHHHHHHHTCT
T ss_pred CCeEEEEeeeCCCCccccccccceeeccCCcccccccccccccccc---------------c-ccHHHHHHHHHHHHhcc
Confidence 4579999999999998888988888877666554443322221111 1 25678888888888433
Q ss_pred C-EEEEEcchhhHHHHcccCC---C-ccchHHHhhHhCC-CCCCCHHHHHHHHhCCccCCC-------CCC---------
Q 018152 222 T-ILVGHSLNNDLEVLKLDHP---R-VIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIRKK-------GTP--------- 279 (360)
Q Consensus 222 ~-iLVGHnl~fDl~~L~~~~~---~-viDT~~l~~~~~~-~~~~sL~~L~~~~Lg~~iq~~-------~~~--------- 279 (360)
. ..||||+.+|+.+|..... . +.||...+....+ ..++++..++..+++..+... ...
T Consensus 90 ~i~ki~hn~~~d~~~l~~~~~~~~~~~~Dt~~a~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 169 (195)
T d1kfsa1 90 KALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALE 169 (195)
T ss_dssp TSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSSCCCCCHHHHHCSGGGCCCGGGSCHH
T ss_pred cceeeechHHHHHHHHHHHhccccCccHHHHHHHHHhcccccccchHHHHHHHhhcccchHhhhcccccCCCChhhCCHH
Confidence 3 4699999999999998643 2 5677776666665 678999999999999876420 001
Q ss_pred ---CChHHHHHHHHHHHHHHHH
Q 018152 280 ---HNCLDDASAAMKLVLAIIE 298 (360)
Q Consensus 280 ---H~AleDA~at~eL~~~~l~ 298 (360)
.-|..||.++.+||..+.+
T Consensus 170 ~~~~YAa~D~~~t~~L~~~l~~ 191 (195)
T d1kfsa1 170 EAGRYAAEDADVTLQLHLKMWP 191 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2378899999999987765
No 10
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=98.75 E-value=4.3e-08 Score=86.02 Aligned_cols=132 Identities=17% Similarity=0.123 Sum_probs=88.2
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhh-
Q 018152 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS- 219 (360)
Q Consensus 141 ~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~- 219 (360)
..++++|||||+|+++....|+=|.+-..+...++|.+ . .+. .+ . +.+++.
T Consensus 21 ~~~~i~~DtE~~~~~~~~~~l~liQi~~~~~~~~id~~----~---------~~~-------~~-~-------l~~ll~~ 72 (193)
T d1yt3a3 21 AFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL----G---------ITD-------WS-P-------LKAILRD 72 (193)
T ss_dssp TSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGG----G---------CSC-------CH-H-------HHHHHHC
T ss_pred cCCeEEEECcccCCCcCCCcEEEEEEecCCcceeehhc----c---------hhh-------hH-H-------HHHHhcC
Confidence 45799999999999876554443333344443333321 0 000 11 1 123332
Q ss_pred CCCEEEEEcchhhHHHHccc----CCCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCC-------------CCCh
Q 018152 220 NGTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGT-------------PHNC 282 (360)
Q Consensus 220 ~g~iLVGHnl~fDl~~L~~~----~~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~-------------~H~A 282 (360)
+.-+-||||+.+|+.+|... ...++||...+.......+++|+.|+++++|+++..+.. -+-|
T Consensus 73 ~~i~Kv~hn~~~D~~~L~~~~g~~~~~~~Dt~~~~~~l~~~~~~~L~~l~~~~lg~~ldK~~q~sdW~~rPL~~~qi~YA 152 (193)
T d1yt3a3 73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYA 152 (193)
T ss_dssp TTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHH
T ss_pred CCceEEEecchhhhhhhhhhcCccccccchhhHHHhhhccccccchhhHHhhhccccccchhhccccccccccHHHHHHH
Confidence 45566999999999998654 345899998887766567899999999999998764211 1456
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 018152 283 LDDASAAMKLVLAIIERR 300 (360)
Q Consensus 283 leDA~at~eL~~~~l~~g 300 (360)
..||..+++||.++.+..
T Consensus 153 A~Dv~~ll~L~~~L~~~l 170 (193)
T d1yt3a3 153 AADVWYLLPITAKLMVET 170 (193)
T ss_dssp HHHHHTHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 789999999998776543
No 11
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.28 E-value=2.6e-06 Score=79.48 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=86.2
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHh-
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLL- 218 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l- 218 (360)
...+.+|||+|+++.+.....++-|.+-..++.-++| +-. +.. . ...|..++
T Consensus 102 ~~~~~iavDtE~~~~~s~~g~l~LiQiat~~~~~iiD----~~~-----------l~~--------~----l~~L~~ll~ 154 (292)
T d2hbka2 102 KNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVD----TLK-----------LRE--------N----LHILNEVFT 154 (292)
T ss_dssp TTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEE----TTT-----------TTT--------T----GGGGHHHHT
T ss_pred hcCCcEEEEEEeCcCcccCCeEEEEEEEeCCccEEEE----ecc-----------ccc--------c----hHHHHHHHh
Confidence 4568999999999988654433333333334333333 211 100 0 01233334
Q ss_pred hCCCEEEEEcchhhHHHHcccC----CCccchHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCC-------------CCC
Q 018152 219 SNGTILVGHSLNNDLEVLKLDH----PRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGT-------------PHN 281 (360)
Q Consensus 219 ~~g~iLVGHnl~fDl~~L~~~~----~~viDT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~-------------~H~ 281 (360)
+.+-+-||||+.+|+.+|.... ..+.||...++.+. ..++||++||+.++|+.+..... -+-
T Consensus 155 d~~I~KV~H~~~~Di~~L~~~~g~~~~n~fDT~~aa~~l~-~~~~sL~~L~~~yl~~~ldK~~q~SdW~~RPLs~~qi~Y 233 (292)
T d2hbka2 155 NPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG-LPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAA 233 (292)
T ss_dssp CTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHT-CSCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHH
T ss_pred ccCeEEEeechHhhhhhhhhcccccccchHHHHHHHHHhC-ccccchHHHHHHhhhhcccccccccccccCcCCHHHHHH
Confidence 2345789999999999997752 34799998877664 46889999999999998764211 134
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 018152 282 CLDDASAAMKLVLAIIER 299 (360)
Q Consensus 282 AleDA~at~eL~~~~l~~ 299 (360)
|..||..++.||..+.+.
T Consensus 234 Aa~Da~~Ll~ly~~L~~~ 251 (292)
T d2hbka2 234 ARADTHFLLNIYDQLRNK 251 (292)
T ss_dssp HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999999876544
No 12
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}
Probab=98.28 E-value=9.2e-07 Score=76.29 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=52.8
Q ss_pred EEEEEEeccCCCCCcccEEEEEEEEcC-CcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhhCCC
Q 018152 144 MYAVDCEMVLCEDGSEGLVRLCVVDRN-LKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGT 222 (360)
Q Consensus 144 ~ValD~Ettgl~~g~~~I~~VsvVd~~-g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~~g~ 222 (360)
+++||+||+|+.+..+.|.+|++.+.. +++. +| .| ....+..+++.+++....
T Consensus 1 il~~DIET~gl~~~~~~I~ci~~~d~~~~~~~--~~-~~-----------------------~~~~~~l~~~~~~l~~~D 54 (204)
T d1x9ma1 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYV--SY-RP-----------------------SDFGAYLDALEAEVARGG 54 (204)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEE--EE-CG-----------------------GGHHHHHHHHHHHHHTTC
T ss_pred CEEEEecCCCCCCCCCEEEEEEEEECCCCeEE--EE-eC-----------------------CCchhHHHHHHHHHhcCC
Confidence 479999999998777779999999874 5433 22 11 024567788888887888
Q ss_pred EEEEEc-chhhHHHHcc
Q 018152 223 ILVGHS-LNNDLEVLKL 238 (360)
Q Consensus 223 iLVGHn-l~fDl~~L~~ 238 (360)
+||||| ..||+.+|+.
T Consensus 55 ~ivghN~~~FD~P~L~~ 71 (204)
T d1x9ma1 55 LIVFHNGHKYDVPALTK 71 (204)
T ss_dssp CEEESSTTTTHHHHHHH
T ss_pred EEEEEccccccHHHHHH
Confidence 999999 6799999974
No 13
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.26 E-value=6.4e-06 Score=75.20 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=102.8
Q ss_pred CcEEEEEEeccCCCCCc-------------------c--cEEEEE--EEEcCCc-----EE--EEEeecCCCcccc-ccc
Q 018152 142 NIMYAVDCEMVLCEDGS-------------------E--GLVRLC--VVDRNLK-----VT--IDELVKPEKAVAD-YRS 190 (360)
Q Consensus 142 ~~~ValD~Ettgl~~g~-------------------~--~I~~Vs--vVd~~g~-----~~--~d~lV~P~~~I~d-~~t 190 (360)
.++||||||++|+.... + .|++++ +.+.+|+ .. |+-++.|...+-. ...
T Consensus 24 ~~fVAiD~EF~G~~~~~~~~~~~t~~~~Y~~lr~nv~~~~iiQ~Glt~~~~~g~~~~~~~~w~FNf~~~~~~~~~~~~Si 103 (252)
T d2d5ra1 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 103 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CCEEEEeeeccCcccCCCCccCCCHHHHHHHHHHHHhhcceeEEEEEeecccCCCCCCceeEEEEEEeCCcccccCHHHH
Confidence 57999999999984321 0 255544 5555553 22 4555666543211 111
Q ss_pred ---ccCCCCHHhhcCCCCCHHHHHHHHH---HHhhCCCEEEEEcchhhHHHHccc--------------------CCCcc
Q 018152 191 ---EITGLTADDLVGVTCSLAEIQKRMK---KLLSNGTILVGHSLNNDLEVLKLD--------------------HPRVI 244 (360)
Q Consensus 191 ---~i~GIT~e~L~~ap~~l~eV~~~l~---~~l~~g~iLVGHnl~fDl~~L~~~--------------------~~~vi 244 (360)
+-+||.=..+...+++...-.+.+. ..++++..+|+||.-+|+.+|-.. .|++.
T Consensus 104 ~fL~~~G~DF~k~~~~GI~~~~f~~~l~~s~~~~~~~~~wv~f~g~yD~~yl~k~l~~~~LP~~~~eF~~~v~~~FP~vy 183 (252)
T d2d5ra1 104 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY 183 (252)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEE
T ss_pred HHHHHcCCChHHHHHcCCCHHHHHHHHHhhhhhhcCCCcEEEecchhHHHHHHHHHcCCCCCCCHHHHHHHHHHHCchHh
Confidence 2356655555444444444333333 245578899999999999877431 35689
Q ss_pred chHHHhhHhCCCCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 018152 245 DTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVD 302 (360)
Q Consensus 245 DT~~l~~~~~~~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~~g~~ 302 (360)
||-.|.+...+ .+.+|..|| ..||++-. +..|.|-.||..|+.+|.++.+.-.+
T Consensus 184 DtK~l~~~~~~-~~~~L~~la-~~L~v~~~--g~~H~AG~DsllT~~~F~~l~~~~~~ 237 (252)
T d2d5ra1 184 DVKYLMKSCKN-LKGGLQEVA-EQLELERI--GPQHQAGSDSLLTGMAFFKMREMFFE 237 (252)
T ss_dssp EHHHHGGGCTT-CCSSHHHHH-HHHTCCCC--SSTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHhhccC-CCchHHHHH-HHcCCCCC--CCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 99998887654 567899999 56687643 45899999999999999988876443
No 14
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
Probab=98.21 E-value=3.1e-06 Score=72.56 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=88.6
Q ss_pred cEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHHhh-CC
Q 018152 143 IMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS-NG 221 (360)
Q Consensus 143 ~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l~-~g 221 (360)
.-+|||+||+|.+.-+.+|+.|++-.+++. .|+.+. ...+. +.|..++. +.
T Consensus 17 ~~~a~~~E~~~~n~~~~~iiGi~i~~~~~~----~~i~~~----------------~~~~~--------~~l~~~l~~~~ 68 (171)
T d2hhva1 17 DKAALVVEVVEENYHDAPIVGIAVVNEHGR----FFLRPE----------------TALAD--------PQFVAWLGDET 68 (171)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTEE----EEECHH----------------HHTTC--------HHHHHHHHCTT
T ss_pred CCeEEEEEcCCCccccCeEEEEEEEECCCE----EEEech----------------hhhhH--------HHHHHHHhCcc
Confidence 347999999999977778999999876542 133221 11111 13444453 46
Q ss_pred CEEEEEcchhhHHHHcccC---C-CccchHHHhhHhCC-CCCCCHHHHHHHHhCCccCCC----CCC------------C
Q 018152 222 TILVGHSLNNDLEVLKLDH---P-RVIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIRKK----GTP------------H 280 (360)
Q Consensus 222 ~iLVGHnl~fDl~~L~~~~---~-~viDT~~l~~~~~~-~~~~sL~~L~~~~Lg~~iq~~----~~~------------H 280 (360)
...||||+.+|+.+|+... + .+.||+..+..+.| ..+++|+.||++|++.++... |.+ -
T Consensus 69 ~~ki~hn~K~d~~~L~~~gi~~~~~~fDt~laayll~p~~~~~~L~~la~~yl~~~~~~~e~~~gkg~k~~~~~~~~~~~ 148 (171)
T d2hhva1 69 KKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAE 148 (171)
T ss_dssp SEEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHHTTTCCSSCCHHHHHCSGGGCCCCCHHHHHH
T ss_pred ceeeccchHHHHHHHHHCCCCCccccccHHHHHHHhcCCcccccHHHHHHHHcCCCCccceeccCcchhhcCCCHHHHHH
Confidence 7899999999999998742 2 25799998888877 678899999999999887531 000 1
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 018152 281 NCLDDASAAMKLVLAIIE 298 (360)
Q Consensus 281 ~AleDA~at~eL~~~~l~ 298 (360)
-|..||.++.+|+..+.+
T Consensus 149 yaa~da~~~~~L~~~l~~ 166 (171)
T d2hhva1 149 HLVRKAAAIWELERPFLD 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 245678888888876554
No 15
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.95 E-value=1.3e-05 Score=70.73 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=62.5
Q ss_pred HHHHHHh-hCCCEEEEEcchhhHHHHcccCC----CccchHHHhhHhCC---CCCCCHHHHHHHHhCCccCCCC----C-
Q 018152 212 KRMKKLL-SNGTILVGHSLNNDLEVLKLDHP----RVIDTSLIFKYVDE---YRRPSLYNLCKSVLGYEIRKKG----T- 278 (360)
Q Consensus 212 ~~l~~~l-~~g~iLVGHnl~fDl~~L~~~~~----~viDT~~l~~~~~~---~~~~sL~~L~~~~Lg~~iq~~~----~- 278 (360)
+.|.+|+ +++-+.||||+.+|+..|+..+. .++|...++....+ ..+++|+.|++.+||..+.... .
T Consensus 98 ~~L~~~L~~~~i~kVG~~i~~D~~~L~~~~gi~~~~~~Dl~~la~~~~~~~~~~~~gL~~L~~~~Lg~~l~K~~~~~SnW 177 (206)
T d1vk0a_ 98 KDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKW 177 (206)
T ss_dssp HHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTG
T ss_pred HHHHHHhcCCCceEEEEeEHHHHHHHHHhcCCcccceEEchHHHHHhhcCCccccchHHHHHHHHhcccCCCcceeecCC
Confidence 3455566 34567899999999999987533 47998888766543 3578999999999999875310 0
Q ss_pred --------CCChHHHHHHHHHHHHHHH
Q 018152 279 --------PHNCLDDASAAMKLVLAII 297 (360)
Q Consensus 279 --------~H~AleDA~at~eL~~~~l 297 (360)
-+-|-.||.++.+||..+.
T Consensus 178 ~~pLs~~Qi~YAA~DA~~~~~i~~~L~ 204 (206)
T d1vk0a_ 178 EKAGPEEQLEAAAIEGWLIVNVWDQLS 204 (206)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235569999999997654
No 16
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}
Probab=97.41 E-value=0.00048 Score=64.31 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=81.6
Q ss_pred CCcEEEEEEeccCC---CCCcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHHHHHHH
Q 018152 141 SNIMYAVDCEMVLC---EDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 217 (360)
Q Consensus 141 ~~~~ValD~Ettgl---~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~ 217 (360)
+-+++++|+||... ....+.|+.|++.+..+...+. .. . +....+.-.. +-.+...+|.++
T Consensus 134 ~~r~~s~DIE~~~~~g~~~~~~~I~~Is~~~~~~~~~~~---~~--~----------~~~~~v~~~~-~E~~lL~~f~~~ 197 (347)
T d1tgoa1 134 ELKMLAFDIETLYHEGEEFAEGPILMISYADEEGARVIT---WK--N----------IDLPYVDVVS-TEKEMIKRFLKV 197 (347)
T ss_dssp CCCEEEEEEEECCCSSSSTTCSCEEEEEEEETTEEEEEE---SS--C----------CCCTTEEECS-SHHHHHHHHHHH
T ss_pred CceEEEEEEEeccCCCCCcccCcEEEEEEecCCCcEEEE---ec--C----------ccCccceeeC-CHHHHHHHHHHH
Confidence 45799999999843 3445579999999876654321 10 1 1111122234 778888888888
Q ss_pred hhCC--CEEEEEcc-hhhHHHHcc-------cC-----------------------CC-ccchHHHhhHhCCCCCCCHHH
Q 018152 218 LSNG--TILVGHSL-NNDLEVLKL-------DH-----------------------PR-VIDTSLIFKYVDEYRRPSLYN 263 (360)
Q Consensus 218 l~~g--~iLVGHnl-~fDl~~L~~-------~~-----------------------~~-viDT~~l~~~~~~~~~~sL~~ 263 (360)
+..- .+++|||. .||+.+|.. .. .+ ++|+..++++.....+++|++
T Consensus 198 i~~~dPDii~g~N~~~FD~pyL~~R~~~~~i~~~~~r~~~~~~~~~~~~~~~~~i~Gr~~~D~~~~~~~~~~l~sy~L~~ 277 (347)
T d1tgoa1 198 VKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKFILGREGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEA 277 (347)
T ss_dssp HHHHCCSEEEESSGGGTHHHHHHHHHHHTTCCCCCSTTSCCCEEEECSSSEEEECTTSEEEEHHHHHHHHCCCSCCCHHH
T ss_pred HhhcCccceeeccccCCchHHHHHHHHHhCCCCccccccCccceeccCceeEEecCCeEEeeHHHHHHHhcccccccHHH
Confidence 8532 69999998 789998843 10 11 589999988766678899999
Q ss_pred HHHHHhCCcc
Q 018152 264 LCKSVLGYEI 273 (360)
Q Consensus 264 L~~~~Lg~~i 273 (360)
+|+.+||..-
T Consensus 278 va~~~l~~~K 287 (347)
T d1tgoa1 278 VYEAIFGQPK 287 (347)
T ss_dssp HHHHHHSSCC
T ss_pred HHHHhcCCCC
Confidence 9999998654
No 17
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.65 E-value=0.011 Score=54.00 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=94.4
Q ss_pred CCCCcEEEEEEeccCCCCCc---------------------ccEEEEEEE--EcCCc------EE--EEEeecCCCcccc
Q 018152 139 MTSNIMYAVDCEMVLCEDGS---------------------EGLVRLCVV--DRNLK------VT--IDELVKPEKAVAD 187 (360)
Q Consensus 139 ~~~~~~ValD~Ettgl~~g~---------------------~~I~~VsvV--d~~g~------~~--~d~lV~P~~~I~d 187 (360)
.+..++||||||++|+-... -.|+.+++- +.+|. .. |+-++.+...+-.
T Consensus 32 i~~~~fvaiD~EF~Gi~~~~~~~~~~t~d~~Y~~lr~nvd~~~iiQlGlt~f~~~g~~~~~~~~~w~FNF~f~~~~d~~~ 111 (286)
T d1uoca_ 32 VSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMS 111 (286)
T ss_dssp TTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCCC
T ss_pred HhcCCEEEEeeeecCcccCCCCCCCCCHHHHHHHHHHhHhhcceeEEeeeeecccCCCCCCCceEEEEEEEecCcccccc
Confidence 34567999999999984210 137776655 44543 12 3445555443211
Q ss_pred -ccc---ccCCCCHHhhcCCCCCHHHHHHHHHH---HhhCCCEEEEEcchhhHHHHccc--------------------C
Q 018152 188 -YRS---EITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKLD--------------------H 240 (360)
Q Consensus 188 -~~t---~i~GIT~e~L~~ap~~l~eV~~~l~~---~l~~g~iLVGHnl~fDl~~L~~~--------------------~ 240 (360)
... +-+||.=..+...+++..+-.+.+.. .+..+..+|.++-..|+.+|-.. .
T Consensus 112 ~~Si~fL~~~G~DF~k~~~~GI~~~~F~~ll~~s~l~~~~~~~wi~fhg~yD~~yl~k~l~~~~LP~~~~eF~~~v~~~F 191 (286)
T d1uoca_ 112 TESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM 191 (286)
T ss_dssp HHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCChHHHHHcCCCHHHHHHHHHhccccccCCcceEEecchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHC
Confidence 111 33666666665555555554444432 22345556666666798876431 3
Q ss_pred CCccchHHHhhHhCC--------------CCCCCHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHH
Q 018152 241 PRVIDTSLIFKYVDE--------------YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIE 298 (360)
Q Consensus 241 ~~viDT~~l~~~~~~--------------~~~~sL~~L~~~~Lg~~iq~~~~~H~AleDA~at~eL~~~~l~ 298 (360)
|++.||-.|++...+ ..+.+|..++ ..++++-. +..|.|=.||..|+.+|.++.+
T Consensus 192 P~iyDtK~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ia-~~l~v~~~--g~~HeAG~DSllT~~~F~~l~~ 260 (286)
T d1uoca_ 192 PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLA-DELGLPRF--SIFTTTGGQSLLMLLSFCQLSK 260 (286)
T ss_dssp SSEEEHHHHHHHHTTTCC-------------CCSHHHHH-HHTTCCCC--GGGGSHHHHHHHHHHHHHHHHH
T ss_pred CcceeHHHHHHHhhccccccccchhhhhccccCCHHHHH-HhcCCCcc--CCCcchHHHHHHHHHHHHHHHH
Confidence 568999888776433 2356899999 56676532 3589999999999999987764
No 18
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Probab=96.26 E-value=0.025 Score=53.56 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=86.0
Q ss_pred CCcEEEEEEeccCCC------C--CcccEEEEEEEEcCCcEEEEEeecCCCcccccccccCCCCHHhhcCCCCCHHHHHH
Q 018152 141 SNIMYAVDCEMVLCE------D--GSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQK 212 (360)
Q Consensus 141 ~~~~ValD~Ettgl~------~--g~~~I~~VsvVd~~g~~~~d~lV~P~~~I~d~~t~i~GIT~e~L~~ap~~l~eV~~ 212 (360)
+-++++||+|+..-. + ....|++|++.+.+|....- .++.. ........+.|+ .+.... +-.+.+.
T Consensus 185 ~l~~lsfDIE~~~~~~~~fP~p~~~~~~ii~I~~~~~~~~~~v~-~~~~~-~~~~~~~~~~~~---~v~~~~-sE~eLL~ 258 (410)
T d1s5ja1 185 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVL-VLNRN-DVNEGSVKLDGI---SVERFN-TEYELLG 258 (410)
T ss_dssp CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEE-EECSS-CCCCCCEEETTE---EEEEES-SHHHHHH
T ss_pred CceEEEEEEEECCCCCCCCCCccccCceEEEEEEEcccCCEEEE-EEccC-CCccccccCCCe---EEEEEC-CHHHHHH
Confidence 458999999995211 1 12368999999876643221 12211 111112222222 233444 7889999
Q ss_pred HHHHHhhCCCEEEEEcc-hhhHHHHccc---C-------C-------------C---------ccchHHHhhHhCCCCCC
Q 018152 213 RMKKLLSNGTILVGHSL-NNDLEVLKLD---H-------P-------------R---------VIDTSLIFKYVDEYRRP 259 (360)
Q Consensus 213 ~l~~~l~~g~iLVGHnl-~fDl~~L~~~---~-------~-------------~---------viDT~~l~~~~~~~~~~ 259 (360)
+|.+++..-.+++|||. .||+.+|..- + + . .+|....++......++
T Consensus 259 ~F~~~i~dpDii~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~l~sy 338 (410)
T d1s5ja1 259 RFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEY 338 (410)
T ss_dssp HHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSSC
T ss_pred HHHhhhcccceEEEecccCCcHHHHHHHHHHhCCccccccccccCccceeEecceEEEecceeeehHHHHHhhccCCCCC
Confidence 99999977789999996 5699988431 0 0 0 12222233322225789
Q ss_pred CHHHHHHHHhCCccC---CCCCCCC-------hHHHHHHHHHHHH
Q 018152 260 SLYNLCKSVLGYEIR---KKGTPHN-------CLDDASAAMKLVL 294 (360)
Q Consensus 260 sL~~L~~~~Lg~~iq---~~~~~H~-------AleDA~at~eL~~ 294 (360)
+|+++|+.+||..-. .....++ ++.||..+.+|+.
T Consensus 339 ~Ld~Va~~~Lg~~K~d~~~~~~~~~~~~l~~Y~~~D~~L~~~L~~ 383 (410)
T d1s5ja1 339 NLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLTT 383 (410)
T ss_dssp SHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHhCcCcccCCCccccCCHHHHHHhhHHHHHHHHHHHh
Confidence 999999999986421 1001111 3577777777754
No 19
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}
Probab=95.90 E-value=0.069 Score=50.18 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=84.5
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEeecCCCc-ccccccccCCCCHHhhcCCCCCHHHHHHHHHHHh
Q 018152 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKA-VADYRSEITGLTADDLVGVTCSLAEIQKRMKKLL 218 (360)
Q Consensus 140 ~~~~~ValD~Ettgl~~g~~~I~~VsvVd~~g~~~~d~lV~P~~~-I~d~~t~i~GIT~e~L~~ap~~l~eV~~~l~~~l 218 (360)
.+-++++||+||.. ..++.+|++-+.....++ .+.|... .+...+ .+...+ +-.+.+.+|.+++
T Consensus 147 P~lkilsfDIE~~~----~~~~~si~l~~~~~~~v~--~~~~~~~~~~~~~~--------~v~~~~-~E~~LL~~F~~~i 211 (388)
T d1q8ia1 147 PPLKWVSIDIETTR----HGELYCIGLEGCGQRIVY--MLGPENGDASSLDF--------ELEYVA-SRPQLLEKLNAWF 211 (388)
T ss_dssp CCCCEEEEEEEECT----TSCEEEEEEEETTEEEEE--EESSCCSCCTTCSS--------EEEEES-SHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEcC----CCceEEEEecCCCCCEEE--EEecCCCCCCCCce--------EEEEeC-CHHHHHHHHHHHH
Confidence 35689999999973 235888887764333221 2222211 111111 123344 6778889988888
Q ss_pred h--CCCEEEEEcc-hhhHHHHccc---------------------------------CCC-ccchHHHhhHhCC-CCCCC
Q 018152 219 S--NGTILVGHSL-NNDLEVLKLD---------------------------------HPR-VIDTSLIFKYVDE-YRRPS 260 (360)
Q Consensus 219 ~--~g~iLVGHnl-~fDl~~L~~~---------------------------------~~~-viDT~~l~~~~~~-~~~~s 260 (360)
. .-.|++|||. .||+.+|-.- ..+ ++|....++.... ..+++
T Consensus 212 ~~~dPDii~GyNi~~FDlpyL~~Ra~~~~i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~lD~~~~~k~~~~~~~sy~ 291 (388)
T d1q8ia1 212 ANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFS 291 (388)
T ss_dssp HHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSSSSCCCEEEEECSSSCEEEEEBTTBEEEEHHHHHHHSCCCCSCCC
T ss_pred HHcCCCEEEecCCCCCCHHHHHHHHHHhCCCchhhhcCCcceeEEccccccceeeecceEEEeehhHHHHhhhccccccC
Confidence 4 2369999996 5799988431 012 4888888876543 67899
Q ss_pred HHHHHHHHhCCccC--CCCC----------------CCChHHHHHHHHHHHHH
Q 018152 261 LYNLCKSVLGYEIR--KKGT----------------PHNCLDDASAAMKLVLA 295 (360)
Q Consensus 261 L~~L~~~~Lg~~iq--~~~~----------------~H~AleDA~at~eL~~~ 295 (360)
|+++|+.+||..-. .... .+-++.||..+.+|+.+
T Consensus 292 L~~Va~~~Lg~~K~~~~~~~~~~~~~~~~~~d~~~l~~Y~~~D~~Lv~~L~~k 344 (388)
T d1q8ia1 292 LETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHK 344 (388)
T ss_dssp HHHHHHTTC------------CTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhhhhhcccccccChhhhHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989885321 1000 12245688888888764
No 20
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]}
Probab=93.64 E-value=0.76 Score=41.75 Aligned_cols=153 Identities=12% Similarity=0.031 Sum_probs=91.8
Q ss_pred CcEEEEEEeccCCC-----CCcccEEEEEEEEcC-CcE-EEEEeecCCCcccccc---------cccCCCCHHhhcCC--
Q 018152 142 NIMYAVDCEMVLCE-----DGSEGLVRLCVVDRN-LKV-TIDELVKPEKAVADYR---------SEITGLTADDLVGV-- 203 (360)
Q Consensus 142 ~~~ValD~Ettgl~-----~g~~~I~~VsvVd~~-g~~-~~d~lV~P~~~I~d~~---------t~i~GIT~e~L~~a-- 203 (360)
...+.+|+|++.-. ...+.|..|++.+.. ++. .|+........+.... ....++..+...+.
T Consensus 105 ~~~~~~die~~~~~~~~~~~~~~~i~~I~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 184 (372)
T d1noya_ 105 VRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVIY 184 (372)
T ss_dssp CCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTEEE
T ss_pred ceEEeecccccccccCCcccchhhhhhhheeeccCCEEEEEEeccccccccccccccccccccccccccccccccCCeEE
Confidence 46889999988643 123469999999863 332 2443333322222211 12223333333332
Q ss_pred ---CCCHHHHHHHHHHHhhC--CCEEEEEcc-hhhHHHHcccC-------------------------------------
Q 018152 204 ---TCSLAEIQKRMKKLLSN--GTILVGHSL-NNDLEVLKLDH------------------------------------- 240 (360)
Q Consensus 204 ---p~~l~eV~~~l~~~l~~--g~iLVGHnl-~fDl~~L~~~~------------------------------------- 240 (360)
. +-.+.+.+|.+++.. -.|++|||. .||+..|..-.
T Consensus 185 ~~~~-~E~~lL~~F~~~~~~~dPDii~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (372)
T d1noya_ 185 MPFD-NERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDG 263 (372)
T ss_dssp EEES-CHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETT
T ss_pred EEcC-CHHHHHHHHHHHHHHcCCCEEEEEccCCcchHHHHHHHHHhccccchhhhhhcccccceeeecccccceeeeecc
Confidence 3 778899999998853 359999996 67998874310
Q ss_pred CCccchHHHhhHhCC--CCCCCHHHHHHHHhCCccCCC-CCCC------------ChHHHHHHHHHHHHH
Q 018152 241 PRVIDTSLIFKYVDE--YRRPSLYNLCKSVLGYEIRKK-GTPH------------NCLDDASAAMKLVLA 295 (360)
Q Consensus 241 ~~viDT~~l~~~~~~--~~~~sL~~L~~~~Lg~~iq~~-~~~H------------~AleDA~at~eL~~~ 295 (360)
..++|...++..... ..+++|++++..++|..-..- +.-+ =++.||..+.+|+.+
T Consensus 264 ~~~~d~~~~~~~~~~~~~~sy~L~~v~~~~l~~~K~~~~~~l~~~~~~d~~~l~~Yni~D~~L~~~L~~k 333 (372)
T d1noya_ 264 VSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKI 333 (372)
T ss_dssp SEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeehhheecccccchhhhhhhheeeccccCCCCcchhHHHHHHhChhHhheecHHHHHHHHHHHHH
Confidence 013666666655443 678999999999998764310 0011 135677778777765
No 21
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]}
Probab=92.81 E-value=1.4 Score=39.99 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=82.6
Q ss_pred CcEEEEEEeccCCCC------CcccEEEEEEEEcCCcE--EEEEeecCCCccccccc---------ccCCCCHHhhcC--
Q 018152 142 NIMYAVDCEMVLCED------GSEGLVRLCVVDRNLKV--TIDELVKPEKAVADYRS---------EITGLTADDLVG-- 202 (360)
Q Consensus 142 ~~~ValD~Ettgl~~------g~~~I~~VsvVd~~g~~--~~d~lV~P~~~I~d~~t---------~i~GIT~e~L~~-- 202 (360)
-+.+++|+|+..-+. ..++|+.|++.+..... .|...-.|.....+... ...+.......+
T Consensus 108 ~~~~~~DIE~~~~~~~p~~~~~~~~i~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 187 (375)
T d1ih7a1 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKII 187 (375)
T ss_dssp SCEEEEEEEECCSSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCTTCCCCCCCHHHHHSCTTTTCCCCCHHHHTTEE
T ss_pred ceeeeEEEEEecCccccCcccccccccceeeeeccCCeEEEEEecCCCcccccccccccccccccccccccccccCCCeE
Confidence 468999999964331 13479999999874332 34444444433333222 223333333332
Q ss_pred ---CCCCHHHHHHHHHHHhhCC--CEEEEEcc-hhhHHHHccc--------------------------C----------
Q 018152 203 ---VTCSLAEIQKRMKKLLSNG--TILVGHSL-NNDLEVLKLD--------------------------H---------- 240 (360)
Q Consensus 203 ---ap~~l~eV~~~l~~~l~~g--~iLVGHnl-~fDl~~L~~~--------------------------~---------- 240 (360)
.. +-.+.+.+|.+++... .|++|||. .||+..|-.- .
T Consensus 188 ~~~~~-sE~eLL~~F~~~~~~~dPDiitGwN~~~FD~pYL~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (375)
T d1ih7a1 188 YMPFD-NEKELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLF 266 (375)
T ss_dssp EEEES-SHHHHHHHHHHHHHHSCCSEEEETTTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEECSSCEEEEEEET
T ss_pred EEEcC-CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCcHHHHHHHHhhhchhhhhhhhhcCCccEEEEEeeccccceeccc
Confidence 24 7788999999988543 49999996 6799877320 0
Q ss_pred CC-ccchHHHhhHhCC--CCCCCHHHHHHHHhCCcc
Q 018152 241 PR-VIDTSLIFKYVDE--YRRPSLYNLCKSVLGYEI 273 (360)
Q Consensus 241 ~~-viDT~~l~~~~~~--~~~~sL~~L~~~~Lg~~i 273 (360)
.+ ++|...+++.... ..+++|..++...+|..-
T Consensus 267 g~~~~D~~~~~~~~~~~~~~s~~l~~v~~~~l~~~K 302 (375)
T d1ih7a1 267 GISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGK 302 (375)
T ss_dssp TCEEEEHHHHHHHHSSCCCSCCSHHHHHHHHTCCCC
T ss_pred cceeeeHHHHHHHhhhccccchhhhHHHHHHhcccc
Confidence 01 4777777776543 678999999988887653
No 22
>d2py5a1 c.55.3.5 (A:5-187) Exonuclease domain of phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]}
Probab=85.82 E-value=1.4 Score=37.01 Aligned_cols=20 Identities=20% Similarity=0.004 Sum_probs=17.0
Q ss_pred hhCCCEEEEEcchhhHHHHc
Q 018152 218 LSNGTILVGHSLNNDLEVLK 237 (360)
Q Consensus 218 l~~g~iLVGHnl~fDl~~L~ 237 (360)
+..+..+..||+.||..||-
T Consensus 48 ~~~~~~vy~HNLgFDg~fIl 67 (183)
T d2py5a1 48 LKVQADLYFHNLKFAGAFII 67 (183)
T ss_dssp HHHCCEEEETTHHHHHHHHH
T ss_pred hccCceEEEECCCccHHHHH
Confidence 35678999999999998884
No 23
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.14 E-value=11 Score=25.22 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=27.7
Q ss_pred hhccCCCCCCCCHHHHhccCCCCCcccc-c---------cceeEEEeccC
Q 018152 319 RLFLHRIPTKVPSEELHGVIPGDFTIEA-K---------VDYFLILSFGH 358 (360)
Q Consensus 319 ~l~~h~ip~~~~~eel~~~~~~~~~~~~-~---------~~~~~~~~~~~ 358 (360)
+++..+||..++.++|.++|+.--+++. + +...++|.|.+
T Consensus 1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~ 50 (75)
T d2msta_ 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 50 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECC
Confidence 3567889999999999999977433332 1 11457777764
No 24
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.50 E-value=12 Score=27.09 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=30.6
Q ss_pred hhccCCCCCCCCHHHHhccCCCCCcc---ccccceeEEEeccC
Q 018152 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKVDYFLILSFGH 358 (360)
Q Consensus 319 ~l~~h~ip~~~~~eel~~~~~~~~~~---~~~~~~~~~~~~~~ 358 (360)
+++...||..++.++|..+|..--.+ ++..+-+++|.|.+
T Consensus 17 ~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~~g~afV~f~~ 59 (98)
T d1wg4a_ 17 RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLR 59 (98)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTSSCEEEEEEETTTEEEEEESS
T ss_pred EEEEECCCCCCCHHHHHHHHHhhcccccccccccceEEEEECC
Confidence 58889999999999999999764432 33445677788865
Done!