BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018153
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 156/272 (57%), Gaps = 24/272 (8%)
Query: 53 ISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTA 112
+ FD+GY++L+G + + D ++ + L+ SGSGF S Y G+F A IKL S +TA
Sbjct: 17 LGFDQGYTNLWGPQH--QRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTA 74
Query: 113 GLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGS---TARGREERYQLW 169
G+ +FY SN +P HDE+D EFLG + GKP+ QTN + GS GRE R LW
Sbjct: 75 GVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLW 134
Query: 170 FDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAT 229
FDPT+ +H Y+I WT + IIF+VD+VPIR R + FP +PM +Y ++WDAS+WAT
Sbjct: 135 FDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS--DATFPLRPMWVYGSVWDASSWAT 192
Query: 230 SGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTD----SRLAEKGLSVITP 285
GK K +Y+Y PF +++DF L C V+ +S+C +L+++ ++ +
Sbjct: 193 ENGKYKADYRYQPFVGKYEDFKLGSCTVE-----AASSCNPASVSPYGQLSQQQVAAM-- 245
Query: 286 AGXXXXXXXXXXYIYYSYCYDTIRYPVPLPEC 317
Y+ Y+YC D R PEC
Sbjct: 246 ------EWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 156/272 (57%), Gaps = 24/272 (8%)
Query: 53 ISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTA 112
+ FD+GY++L+G + + D ++ + L+ SGSGF S Y G+F A IKL S +TA
Sbjct: 20 LGFDQGYTNLWGPQH--QRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTA 77
Query: 113 GLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGS---TARGREERYQLW 169
G+ +FY SN +P HDE+D EFLG + GKP+ QTN + GS GRE R LW
Sbjct: 78 GVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLW 137
Query: 170 FDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAT 229
FDPT+ +H Y+I WT + IIF+VD+VPIR R + FP +P+ +Y ++WDAS+WAT
Sbjct: 138 FDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS--DATFPLRPLWVYGSVWDASSWAT 195
Query: 230 SGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTD----SRLAEKGLSVITP 285
GK K +Y+Y PF +++DF L C V+ +S+C +L+++ ++ +
Sbjct: 196 ENGKYKADYRYQPFVGKYEDFKLGSCTVE-----AASSCNPASVSPYGQLSQQQVAAM-- 248
Query: 286 AGXXXXXXXXXXYIYYSYCYDTIRYPVPLPEC 317
Y+ Y+YC D R PEC
Sbjct: 249 ------EWVQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 155/269 (57%), Gaps = 23/269 (8%)
Query: 53 ISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTA 112
+ FD+GY++L+G + + D ++ + L+ SGSGF S Y G+F A IKL S +TA
Sbjct: 18 LGFDQGYTNLWGPQH--QRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTA 75
Query: 113 GLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDP 172
G+ +FY SN +P HDE+D EFLG + GKP+ QTN + GS RE R LWFDP
Sbjct: 76 GVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSG--DREMRIHLWFDP 133
Query: 173 TKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGG 232
T+ +H Y+I WT + IIF+VD+VPIR R + FP +P+ +Y ++WDAS+WAT G
Sbjct: 134 TQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS--DATFPLRPLWVYGSVWDASSWATENG 191
Query: 233 KAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTD----SRLAEKGLSVITPAGX 288
K K +Y+Y PF +++DF L C V+ +S+C +L+++ ++ +
Sbjct: 192 KYKADYRYQPFVGKYEDFKLGSCTVE-----AASSCNPASVSPYGQLSQQQVAAM----- 241
Query: 289 XXXXXXXXXYIYYSYCYDTIRYPVPLPEC 317
Y+ Y+YC D R PEC
Sbjct: 242 ---EWVQKNYMVYNYCDDPTRDHTLTPEC 267
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 155/269 (57%), Gaps = 23/269 (8%)
Query: 53 ISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTA 112
+ FD+GY++L+G + + D ++ + L+ SGSGF S Y G+F A IKL S +TA
Sbjct: 41 LGFDQGYTNLWGPQH--QRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTA 98
Query: 113 GLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDP 172
G+ +FY SN +P HDE+D EFLG + GKP+ QTN + GS RE R LWFDP
Sbjct: 99 GVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSG--DREMRIHLWFDP 156
Query: 173 TKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGG 232
T+ +H Y+I WT + IIF+VD+VPIR R + FP +P+ +Y ++WDAS+WAT G
Sbjct: 157 TQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS--DATFPLRPLWVYGSVWDASSWATENG 214
Query: 233 KAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTD----SRLAEKGLSVITPAGX 288
K K +Y+Y PF +++DF L C V+ +S+C +L+++ ++ +
Sbjct: 215 KYKADYRYQPFVGKYEDFKLGSCTVE-----AASSCNPASVSPYGQLSQQQVAAM----- 264
Query: 289 XXXXXXXXXYIYYSYCYDTIRYPVPLPEC 317
Y+ Y+YC D R PEC
Sbjct: 265 ---EWVQKNYMVYNYCDDPTRDHTLTPEC 290
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 11/246 (4%)
Query: 74 GKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDEL 133
G ++L L++++G+GF S Y G FS +KL +AG AFY S+ + HDE+
Sbjct: 36 GNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQN---SEHDEI 92
Query: 134 DFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVD 193
DFEFLGN G+P+ QTN + G RE+R LWFDPTK+FH YS+LW I+F VD
Sbjct: 93 DFEFLGNRTGQPYILQTNVFTGGKG--DREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVD 150
Query: 194 EVPIREVVRSTAMGGDFP-SKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVL 252
+VPIR +G FP ++PM +Y+++W+A +WAT GG K ++ APF + ++ F +
Sbjct: 151 DVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHI 210
Query: 253 EGCPVDPIEQVPSSNCQDTDSR-LAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYP 311
+GC V + C +R +K + Y Y+YC D RYP
Sbjct: 211 DGCEA----SVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRSRYP 266
Query: 312 VPLPEC 317
PEC
Sbjct: 267 SMPPEC 272
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 67 NLIRSPDGKNVRLLL-----NRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTS 121
N+ + DGK ++L L N+F + + S+ +Y +G + +K P+ +T G+ +F+T
Sbjct: 36 NVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTY 92
Query: 122 NGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSI 181
G DE+D EFLG K Q N+Y NG G E+ L FD +K FH Y+
Sbjct: 93 TGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG--VGGHEKVISLGFDASKGFHTYAF 147
Query: 182 LWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDAS 225
W I +YVD V++ TA + PS P + +W+ +
Sbjct: 148 DWQPGYIKWYVD-----GVLKHTAT-ANIPSTPGKIMMNLWNGT 185
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 67 NLIRSPDGKNVRLLL-----NRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTS 121
N+ + DGK ++L L N+F + + S+ +Y +G + +K P+ +T G+ +F+T
Sbjct: 38 NVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTY 94
Query: 122 NGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSI 181
G DE+D EFLG K Q N+Y NG G E+ L FD +K FH Y+
Sbjct: 95 TGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG--VGGHEKVISLGFDASKGFHTYAF 149
Query: 182 LWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDAS 225
W I +YVD V++ TA + PS P + +W+ +
Sbjct: 150 DWQPGYIKWYVD-----GVLKHTAT-ANIPSTPGKIMMNLWNGT 187
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 82 NRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNV 141
N+F G G S + Y +G + +K + G+ AFYTS G DE+D EFLG
Sbjct: 44 NKFDGGGNQSVQTYGYGLYEVNMKPAKN--VGIVSAFYTSTGPTDGTPWDEIDIEFLGKD 101
Query: 142 AGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVV 201
K Q N+Y NG E+ L FD +H Y+ W N+I +YVD +
Sbjct: 102 TTK---VQFNYYTNG--VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVD-----GQL 151
Query: 202 RSTAMGGDFPSKPMSLYTTIWDAS 225
+ TA P P +Y ++W +
Sbjct: 152 KHTAT-TQIPQTPGKIYMSLWAGA 174
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 27/211 (12%)
Query: 89 FVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRF 148
+ S+ +Y +G + +K P+ +T G+ +F+T G DE+D EFLG K
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 149 QTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGG 208
Q N+Y NG G E+ L FD +K FH Y+ W I +YVD V++ TA
Sbjct: 61 QFNYYTNG--VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD-----GVLKHTAT-A 112
Query: 209 DFPSKPMSLYTTIWDAS---NWATSGGKAK---VNYKYAPFTSE-----FKDFVLEGCPV 257
+ PS P + +W+ + +W S A Y + +TS ++++ G V
Sbjct: 113 NIPSTPGKIMMNLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSNASTDYWQNWTDGGGIV 172
Query: 258 DPIEQVP---SSNCQDTDSRLAEKGLSVITP 285
+ + S N +T + + KG + +P
Sbjct: 173 NAVNGSGGNYSVNWSNTGNFVVGKGWTTGSP 203
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 67 NLIRSPDGKNVRLLL-----NRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTS 121
N+ + DGK ++L L N+F + + S+ +Y +G + +K P+ +T G+ +F+T
Sbjct: 38 NVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTY 94
Query: 122 NGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSI 181
G D++D +FLG K Q N+Y NG G E+ L FD +K FH Y+
Sbjct: 95 TGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNG--VGGHEKVISLGFDASKGFHTYAF 149
Query: 182 LWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDAS 225
W I +YVD V++ TA + PS P + +W+ +
Sbjct: 150 DWQPGYIKWYVD-----GVLKHTAT-ANIPSTPGKIMMNLWNGT 187
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 84 FSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAG 143
F + + S+ +Y +G + +K P+ +T G+ +F+T G DE+D EFLG
Sbjct: 1 FDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTT 58
Query: 144 KPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRS 203
K Q N+Y NG G E+ L FD +K FH Y+ W I +YVD V++
Sbjct: 59 K---VQFNYYTNG--VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD-----GVLKH 108
Query: 204 TAMGGDFPSKPMSLYTTIWDAS 225
TA + PS P + +W+ +
Sbjct: 109 TAT-ANIPSTPGKIMMNLWNGT 129
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 89 FVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRF 148
+ S+ +Y +G + +K P+ +T G+ +F+T G DE+D EFLG K
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 149 QTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGG 208
Q N+Y NG G E+ L FD +K FH Y+ W I +YVD V++ TA
Sbjct: 61 QFNYYTNG--VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD-----GVLKHTAT-A 112
Query: 209 DFPSKPMSLYTTIWDAS 225
+ PS P + +W+ +
Sbjct: 113 NIPSTPGKIMMNLWNGT 129
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 84 FSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAG 143
++G+ + + + +G + +++ G+ +F+T G V DE+D EFLG
Sbjct: 79 YAGAEYRTRDKFGYGLYQ--VRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTT 136
Query: 144 KPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRS 203
K Q N+Y N +A E Y L FD ++ FH Y+ W N I + VD EV R+
Sbjct: 137 K---VQFNYYTN--SAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDG---EEVYRA 188
Query: 204 TAMGGDFPSKPMSLYTTIW 222
D P P + IW
Sbjct: 189 YD---DIPVHPGKIMLNIW 204
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 113 GLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDP 172
G+ +F+T G DE+D EFLG K Q N+Y NG G E+ L FD
Sbjct: 3 GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG--VGGHEKVISLGFDA 57
Query: 173 TKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDAS 225
+K FH Y+ W I +YVD V++ TA + PS P + +W+ +
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVD-----GVLKHTAT-ANIPSTPGKIMMNLWNGT 104
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 77 VRLLL-----NRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHD 131
+RL L N+F S + Y +G + +K P+ +T G+ +F+T G D
Sbjct: 71 MRLALTSPAYNKFDCGENRSVQTYGYGLYEVRMK-PAKNT-GIVSSFFTYTGPTDGTPWD 128
Query: 132 ELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFY 191
E+D EFLG K Q N+Y NG A E+ L FD +H Y+ W N+I +Y
Sbjct: 129 EIDIEFLGKDTTK---VQFNYYTNG--AGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWY 183
Query: 192 VDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDAS 225
VD ++ TA P+ P + +W+ +
Sbjct: 184 VD-----GQLKHTAT-NQIPTTPGKIMMNLWNGT 211
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 82 NRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNV 141
N+F S + Y +G + +K + G+ +F+T G DE+D EFLG
Sbjct: 57 NKFDCGENRSVQTYGYGLYEVNMKPAKN--VGIVSSFFTYTGPTDGTPWDEIDIEFLGKD 114
Query: 142 AGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVV 201
K Q N+Y NG E+ L FD +H Y+ W N+I +YVD +
Sbjct: 115 TTK---VQFNYYTNG--VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVD-----GQL 164
Query: 202 RSTAMGGDFPSKPMSLYTTIWDAS 225
+ TA P P + +W+ +
Sbjct: 165 KHTAT-TQIPQTPGKIMMNLWNGA 187
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 81 LNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHD--ELDFEFL 138
+ FSG+ + + Y +G F A +K+ + + + F NG E+D E L
Sbjct: 4 MKDFSGAELYTLEEYQYGKFEARMKMAA-ASGTVSSMFLYQNGSEIADGRPWVEVDIEVL 62
Query: 139 GNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQ-FHRYSILWTSNNIIFYVDEVPI 197
G P FQ+N + A+ E++ Q FH Y + WT N + + VD +
Sbjct: 63 GK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEV 119
Query: 198 REV 200
R+
Sbjct: 120 RKT 122
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 67 NLIRSPDGKNVRLLL-----NRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTS 121
N+ + DGK ++L L N+F + + S+ +Y +G + +K P+ +T G+ +F+T
Sbjct: 126 NVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTY 182
Query: 122 NGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNG 156
G DE+D EFLG K Q N+Y NG
Sbjct: 183 TGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG 214
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 161 GREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTT 220
G E+ L FD +K FH Y+ W I +YVD V++ TA + PS P +
Sbjct: 3 GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD-----GVLKHTAT-ANIPSTPGKIMMN 56
Query: 221 IWDAS 225
+W+ +
Sbjct: 57 LWNGT 61
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 84 FSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFP-KTHDELDFEFLGNVA 142
FSG+ + + +G F A +K+ + + Y + ++ + E+D E LG
Sbjct: 5 FSGAELYTLEEVQYGKFEARMKMAAASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK-- 62
Query: 143 GKPWRFQTNFYGNGSTARGREERYQLWFDPTKQ-FHRYSILWTSNNIIFYVDEVPIREV 200
P FQ+N + A+ E++ Q FH Y + WT N + + VD +R+
Sbjct: 63 -NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 84 FSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHD--ELDFEFLGNV 141
FSG+ + + +G F A +K+ + + + F NG E+D E LG
Sbjct: 4 FSGAELYTLEEVQYGKFEARMKMAA-ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 142 AGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQ-FHRYSILWTSNNIIFYVDEVPIREV 200
P FQ+N + A+ E++ Q FH Y + WT N + + VD +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 119
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 73 DGKNVRLLLNRFSGSG-FVSSKLYNHGFFS-------AMIKLPSDHTAGLCVAFYTSNGD 124
DG+ ++ R G G + S+++ G + A I++P G+ AF+ G
Sbjct: 51 DGQGNLVITARREGDGSYTSARMTTQGKYQPQYGRIEARIQIPRGQ--GIWPAFWMLGGS 108
Query: 125 VFPKTH--DELDFEFLGNVAGKPWRFQTNFYG----NGSTARGREERYQLW-FDPTKQFH 177
FP T + + + NV +P R +G GS G + Q W F T FH
Sbjct: 109 -FPGTPWPSSGEIDIMENVGFEPHRVHGTVHGPGYSGGSGITGMYQHPQGWSFADT--FH 165
Query: 178 RYSILWTSNNIIFYVDEVPIREVVRST 204
+++ W I ++VD V R++
Sbjct: 166 TFAVDWKPGEITWFVDGQQFHRVTRAS 192
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 84 FSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHD--ELDFEFLGNV 141
FSG+ + + +G F A K + + + F NG E+D E LG
Sbjct: 7 FSGAELYTLEEVQYGKFEARXKXAA-ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 64
Query: 142 AGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQ-FHRYSILWTSNNIIFYVDEVPIREV 200
P FQ+N + A+ E++ Q FH Y + WT N + + VD +R+
Sbjct: 65 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 122
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 84 FSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHD--ELDFEFLGNV 141
FSG+ + + +G F A K + + + F NG E+D E LG
Sbjct: 4 FSGAELYTLEEVQYGKFEARXKXAA-ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 142 AGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQ-FHRYSILWTSNNIIFYVDEVPIREV 200
P FQ+N + A+ E++ Q FH Y + WT N + + VD +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 119
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 84 FSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHD--ELDFEFLGNV 141
FSG+ + + +G F A +K+ + + + F NG E+D E LG
Sbjct: 5 FSGAELYTLEEVQYGKFEARMKMAA-ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 142 AGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQ-FHRYSILWTSNNIIFYVDEVPIREV 200
P FQ+N + A+ ++ Q FH Y + WT N + + VD +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 101 SAMIKLPSDHTAGLCVAFYTSNGDV----FPKTHDELDFEFLGNVAGKPWRFQTNFYGNG 156
A IKLP GL AF+ ++ +P + EFLG+ +P +G G
Sbjct: 105 EARIKLPKG--KGLWPAFWMLGSNIREVGWPNCGEIDIMEFLGH---EPRTIHGTVHGPG 159
Query: 157 -STARGREERYQL---WFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRST--AMG 207
S ++G Y L D T+ FH + I+W + I +YVD EV + AMG
Sbjct: 160 YSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPDKIKWYVDGTFYHEVTKEQVEAMG 216
>pdb|1GVH|A Chain A, The X-Ray Structure Of Ferric Escherichia Coli
Flavohemoglobin Reveals An Unespected Geometry Of The
Distal Heme Pocket
Length = 396
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 57 EGYSHL-FGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKL 106
EG+ H +L R PDGK R+ + R G G VS+ L+NH ++KL
Sbjct: 196 EGFPHQEIRQYSLTRKPDGKGYRIAVKREEG-GQVSNWLHNHANVGDVVKL 245
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 58/146 (39%), Gaps = 31/146 (21%)
Query: 73 DGKNVRLLLN--RFSGSGFVSSKLY-NHGFFSAMIKLPSDHTAGLCVAFY---------T 120
DG N + + N + SG S+ N+G++ A IK S G+ AF+ T
Sbjct: 70 DGCNQQQVANYPLYYTSGVAKSRATGNYGYYEARIKGASTF-PGVSPAFWXYSTIDRSLT 128
Query: 121 SNGDVFPKTHDELDF----------EFLGNVA---GKPWRFQTNFYGNGSTARGREERYQ 167
GDV D ++ L N+ GKP + GS + Y
Sbjct: 129 KEGDVQYSEIDVVELTQKSAVRESDHDLHNIVVKNGKP-----TWXRPGSFPQTNHNGYH 183
Query: 168 LWFDPTKQFHRYSILWTSNNIIFYVD 193
L FDP FH Y + T + I +YVD
Sbjct: 184 LPFDPRNDFHTYGVNVTKDKITWYVD 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,414,340
Number of Sequences: 62578
Number of extensions: 425227
Number of successful extensions: 782
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 31
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)