Query 018153
Match_columns 360
No_of_seqs 339 out of 1772
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:35:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 3.2E-78 7E-83 577.3 32.1 261 53-320 25-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 6.6E-78 1.4E-82 571.1 32.7 258 52-317 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 5.6E-44 1.2E-48 328.6 26.4 190 46-255 1-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 9.6E-38 2.1E-42 288.3 26.1 174 62-253 28-211 (212)
5 cd02178 GH16_beta_agarase Beta 100.0 9.7E-37 2.1E-41 289.7 24.7 207 37-253 16-257 (258)
6 cd08023 GH16_laminarinase_like 100.0 1.5E-34 3.3E-39 269.9 24.5 199 44-253 1-235 (235)
7 cd02180 GH16_fungal_KRE6_gluca 100.0 5.7E-35 1.2E-39 282.2 22.1 207 42-253 1-294 (295)
8 cd00413 Glyco_hydrolase_16 gly 100.0 3.8E-34 8.3E-39 261.5 25.5 191 46-253 1-210 (210)
9 cd02177 GH16_kappa_carrageenas 100.0 6.1E-34 1.3E-38 271.9 24.7 200 40-253 8-268 (269)
10 PF00722 Glyco_hydro_16: Glyco 100.0 4.2E-34 9.1E-39 256.7 17.9 176 58-251 4-185 (185)
11 cd02182 GH16_Strep_laminarinas 100.0 2.3E-33 4.9E-38 266.8 22.9 207 40-253 2-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 2.6E-31 5.6E-36 260.9 21.8 139 88-228 103-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 3.9E-31 8.6E-36 258.6 21.1 179 42-225 1-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 8.4E-26 1.8E-30 223.1 21.1 197 41-249 50-261 (355)
15 PF03935 SKN1: Beta-glucan syn 99.8 2.2E-19 4.9E-24 182.4 17.6 208 41-255 120-454 (504)
16 PF06955 XET_C: Xyloglucan end 99.8 5.8E-19 1.3E-23 128.0 4.4 45 272-317 6-51 (51)
17 cd02181 GH16_fungal_Lam16A_glu 99.6 1.3E-14 2.9E-19 139.5 13.7 150 69-228 44-251 (293)
18 PF13385 Laminin_G_3: Concanav 92.3 4.2 9.2E-05 33.5 12.5 67 173-256 84-150 (157)
19 PF10287 DUF2401: Putative TOS 91.5 0.84 1.8E-05 43.2 7.8 81 99-185 102-206 (235)
20 PF06439 DUF1080: Domain of Un 91.3 5.9 0.00013 34.8 12.9 145 44-203 2-156 (185)
21 PF09264 Sial-lect-inser: Vibr 89.2 1.7 3.8E-05 39.7 7.6 28 174-201 92-121 (198)
22 smart00560 LamGL LamG-like jel 87.6 16 0.00035 30.8 14.5 70 172-258 59-131 (133)
23 smart00210 TSPN Thrombospondin 85.4 15 0.00032 33.1 11.5 29 173-201 116-144 (184)
24 smart00159 PTX Pentraxin / C-r 82.9 14 0.00029 34.0 10.3 73 172-254 88-162 (206)
25 cd00152 PTX Pentraxins are pla 82.7 13 0.00029 33.8 10.2 73 172-254 88-162 (201)
26 KOG1834 Calsyntenin [Extracell 79.7 11 0.00023 40.9 9.2 58 167-228 435-492 (952)
27 cd00110 LamG Laminin G domain; 76.9 42 0.00091 27.9 15.4 85 97-200 21-106 (151)
28 PF02210 Laminin_G_2: Laminin 68.0 60 0.0013 25.9 9.4 75 173-254 53-127 (128)
29 COG3248 Tsx Nucleoside-binding 60.7 19 0.00041 34.3 5.4 43 10-52 2-47 (284)
30 PF13670 PepSY_2: Peptidase pr 50.3 15 0.00033 28.6 2.7 23 67-89 57-80 (83)
31 PF00354 Pentaxin: Pentaxin fa 45.9 2.2E+02 0.0048 25.9 10.0 71 172-252 82-154 (195)
32 cd06526 metazoan_ACD Alpha-cry 36.4 67 0.0014 24.8 4.3 46 61-109 16-61 (83)
33 PF14099 Polysacc_lyase: Polys 35.7 1.1E+02 0.0024 27.8 6.4 73 168-252 146-224 (224)
34 smart00282 LamG Laminin G doma 34.1 2.6E+02 0.0057 22.8 14.2 28 173-200 61-88 (135)
35 cd06482 ACD_HspB10 Alpha cryst 32.6 82 0.0018 25.1 4.3 49 61-109 17-65 (87)
36 cd06470 ACD_IbpA-B_like Alpha- 29.8 98 0.0021 24.4 4.4 48 61-109 20-71 (90)
37 PF07172 GRP: Glycine rich pro 28.7 19 0.0004 29.5 -0.0 12 14-25 4-15 (95)
38 COG2063 FlgH Flagellar basal b 26.1 1.9E+02 0.0042 27.5 6.2 76 13-90 3-91 (230)
39 PF09224 DUF1961: Domain of un 26.0 2.8E+02 0.0061 26.1 7.1 59 174-252 159-218 (218)
40 PF06832 BiPBP_C: Penicillin-B 23.8 88 0.0019 24.4 3.1 35 187-223 44-79 (89)
41 cd00070 GLECT Galectin/galacto 22.2 3.4E+02 0.0073 22.5 6.6 42 160-202 63-105 (127)
42 PF00722 Glyco_hydro_16: Glyco 22.0 71 0.0015 28.0 2.5 10 213-222 118-127 (185)
43 COG3198 Uncharacterized protei 22.0 69 0.0015 28.5 2.2 33 14-46 11-43 (172)
44 PF07691 PA14: PA14 domain; I 21.4 1.4E+02 0.003 24.7 4.0 29 172-201 57-85 (145)
45 PRK11546 zraP zinc resistance 21.0 67 0.0014 28.3 2.0 22 277-298 38-59 (143)
46 PF02973 Sialidase: Sialidase, 20.7 6.7E+02 0.014 23.1 13.0 136 95-257 32-177 (190)
47 COG0071 IbpA Molecular chapero 20.1 3.3E+02 0.0072 23.3 6.2 49 61-109 59-111 (146)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=3.2e-78 Score=577.27 Aligned_cols=261 Identities=34% Similarity=0.706 Sum_probs=238.8
Q ss_pred cCcCCCCcCcccCCcEEEcCCCCeEEEEEeecCCCeeEEcceeEEeEEEEEEEecCCCCCceEEEEEeecCCCCCCCCCe
Q 018153 53 ISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDE 132 (360)
Q Consensus 53 ~~f~~~~~~~W~~~~v~~~~dG~~l~L~ld~~sgs~~~Sk~~f~YG~fEariKlp~g~s~G~~pAFwl~~~~~~~~~~~E 132 (360)
.+|++++...|+.+|+.++.+|+.|+|+||+.+|++|.||+.|+||+||||||||+|+++|+||||||++.+ +.+||
T Consensus 25 ~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~---~~~dE 101 (291)
T PLN03161 25 ADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTG---SRHDE 101 (291)
T ss_pred ccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCC---CCCCe
Confidence 358888889999999999877788999999999999999999999999999999998889999999999863 47999
Q ss_pred eEEEEcCCCCCCCcEEEeeeecCCCCCCCCceEEEcCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEccCCCCCCCC-
Q 018153 133 LDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFP- 211 (360)
Q Consensus 133 IDiE~lG~~~g~p~~~qtNv~~~G~~~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P- 211 (360)
|||||||+++++|+++|||+|.+|. +.+++++.++||++++||+|+|+|+|++|+|||||++||++++.+..|.+||
T Consensus 102 IDiEfLG~~~g~~~~vqtN~y~~g~--g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~ 179 (291)
T PLN03161 102 IDFEFLGNVSGQPYTIHTNIYTQGN--GSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPN 179 (291)
T ss_pred EEEEecCCCCCCceEEEeceEeCCc--CCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCC
Confidence 9999999998899999999998886 4688889999999999999999999999999999999999998777788999
Q ss_pred CCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcEEEEeeccCCCCCCCCCCCccCC--ccccccccCCCCCHHHHH
Q 018153 212 SKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDT--DSRLAEKGLSVITPAGRR 289 (360)
Q Consensus 212 ~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~~~v~~c~~~~~~~~~~~~c~~~--~~~~~~~~~~~l~~~~~~ 289 (360)
.+||+|++|||+|++|||+||++||||+++||+|.|++|+|+||.+.+... ...|.++ ..||+++.++.|+++|++
T Consensus 180 ~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~--~~~c~~~~~~~~~~~~~~~~l~~~~~~ 257 (291)
T PLN03161 180 KQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVS--IKQCADPTPSNWWTSPSYSQLTNAQLT 257 (291)
T ss_pred ccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCC--ccccCCCCccccccCccccCCCHHHHH
Confidence 689999999999999999999999999999999999999999999864311 2369763 467788888999999999
Q ss_pred HHHHHhhcCeeEeecccCCCCCC-CCCCccCC
Q 018153 290 AMRRFRERYIYYSYCYDTIRYPV-PLPECVLV 320 (360)
Q Consensus 290 ~~~~v~~~~~~YdYC~D~~R~~~-~p~ec~~~ 320 (360)
+|+|||+||||||||+|++|||+ +||||..+
T Consensus 258 ~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 258 QMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred HHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 99999999999999999999998 89999765
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=6.6e-78 Score=571.12 Aligned_cols=258 Identities=48% Similarity=0.936 Sum_probs=239.2
Q ss_pred CcCcCCCCcCcccCCcEEEcCCCCeEEEEEeecCCCeeEEcceeEEeEEEEEEEecCCCCCceEEEEEeecCCCCCCCCC
Q 018153 52 TISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHD 131 (360)
Q Consensus 52 ~~~f~~~~~~~W~~~~v~~~~dG~~l~L~ld~~sgs~~~Sk~~f~YG~fEariKlp~g~s~G~~pAFwl~~~~~~~~~~~ 131 (360)
+..|+++|.+.|+++|+.+..+|+.|+|+||+++|++|.|+..|+||+||||||||+|+++|+||||||++++ ||.++
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~--wp~~~ 80 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQG--PDNHD 80 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCC--CCCCC
Confidence 3468999999999999999888889999999999999999999999999999999998889999999999986 78999
Q ss_pred eeEEEEcCCCCCCCcEEEeeeecCCCCCCCCceEEEcCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEccCCCCCCCC
Q 018153 132 ELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFP 211 (360)
Q Consensus 132 EIDiE~lG~~~g~p~~~qtNv~~~G~~~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P 211 (360)
|||||+||+.+++|+++|||+|.+|. +++++++.++||++++||+|+|+|+|++|+|||||++||++++.+..|.+||
T Consensus 81 EID~E~lGn~~g~~~~~qtnv~~~g~--g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P 158 (263)
T cd02176 81 EIDFEFLGNVTGQPYTLQTNVFANGV--GGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYP 158 (263)
T ss_pred eEEEEEecccCCCceEEEEEEeCCCC--CCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCC
Confidence 99999999998899999999998886 4588889999999999999999999999999999999999998877788999
Q ss_pred -CCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcEEEEeeccCCCCCCCCCCCccCC--ccccccccCCCCCHHHH
Q 018153 212 -SKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDT--DSRLAEKGLSVITPAGR 288 (360)
Q Consensus 212 -~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~~~v~~c~~~~~~~~~~~~c~~~--~~~~~~~~~~~l~~~~~ 288 (360)
++||+|++|||+||+|||+||+++|||+++||+|.|++|+|.+|.+++.. ..|... ..||+.+.+++|+++|+
T Consensus 159 ~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (263)
T cd02176 159 SSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGD----SFSSCSCTEDWWNGSTYQQLSANQQ 234 (263)
T ss_pred ccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCC----ccccCCCccccccccccccCCHHHH
Confidence 59999999999999999999999999999999999999999999986532 245432 46788888999999999
Q ss_pred HHHHHHhhcCeeEeecccCCCCCCCCCCc
Q 018153 289 RAMRRFRERYIYYSYCYDTIRYPVPLPEC 317 (360)
Q Consensus 289 ~~~~~v~~~~~~YdYC~D~~R~~~~p~ec 317 (360)
++|+|||+||||||||+|++|||.+||||
T Consensus 235 ~~~~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 235 RAMEWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHHHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 99999999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=5.6e-44 Score=328.55 Aligned_cols=190 Identities=27% Similarity=0.507 Sum_probs=159.4
Q ss_pred cCCCCCCcCcCCCCcCcccCCcEEEcCCCCeEEEEEeec-CCCeeEEcceeEEeEEEEEEEecCCCCCceEEEEEeecCC
Q 018153 46 SAFNLATISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRF-SGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGD 124 (360)
Q Consensus 46 DeFng~~~~f~~~~~~~W~~~~v~~~~dG~~l~L~ld~~-sgs~~~Sk~~f~YG~fEariKlp~g~s~G~~pAFwl~~~~ 124 (360)
+||+|.+..++ =....+++.+..+ .|.|+|++. ++++|.|++.|+||+||||||||.+ +|+||||||++++
T Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~--~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~~ 72 (203)
T cd02183 1 FDFTGNASSYD----WTVTSGTVDYDDD--GASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSDD 72 (203)
T ss_pred CccccCCccCc----cEecCCcEeECCC--eEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECCC
Confidence 36777653211 0123567888643 499999987 6899999999999999999999999 9999999999873
Q ss_pred CCCCCCCeeEEEEcCCCCCCCcEEEeeeecCCCC-CCCCceEEEcCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEcc
Q 018153 125 VFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGST-ARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRS 203 (360)
Q Consensus 125 ~~~~~~~EIDiE~lG~~~g~p~~~qtNv~~~G~~-~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 203 (360)
++|||||++|+ ++..+|+|+|.+|.. ..++.+.+.++++++++||+|+|+|+|+.|+|||||++++++++.
T Consensus 73 -----~gEIDIE~~G~---~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~ 144 (203)
T cd02183 73 -----LDEIDWEWVGG---DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKA 144 (203)
T ss_pred -----CCEEEEEecCC---CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehh
Confidence 69999999997 456899999977653 234556678888888999999999999999999999999999875
Q ss_pred CC-CCCCCCCCCeeEEEEEecCCC---------cccCCCccccCCCCCCEEEEEcEEEEeec
Q 018153 204 TA-MGGDFPSKPMSLYTTIWDASN---------WATSGGKAKVNYKYAPFTSEFKDFVLEGC 255 (360)
Q Consensus 204 ~~-~g~~~P~~Pm~l~lnlw~Gg~---------Wat~GG~~~id~~~~Pf~a~~~~~~v~~c 255 (360)
+. .+..||++||+|+||+|+||+ || || +|||+.+||+|.|++|+|.++
T Consensus 145 ~~~~~~~~p~~P~~l~ln~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 145 DTTGGYGYPQTPMRLQIGIWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred hcccCCCCCCCCcEEEEEEecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEEeC
Confidence 43 356799999999999999985 99 78 499999999999999999875
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=9.6e-38 Score=288.33 Aligned_cols=174 Identities=28% Similarity=0.540 Sum_probs=143.7
Q ss_pred cccCCcEEEcCCCCeEEEEEeec-------CCCeeEEcceeEEeEEEEEEEecCCCCCceEEEEEeecCCCCCCCCCeeE
Q 018153 62 LFGDGNLIRSPDGKNVRLLLNRF-------SGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELD 134 (360)
Q Consensus 62 ~W~~~~v~~~~dG~~l~L~ld~~-------sgs~~~Sk~~f~YG~fEariKlp~g~s~G~~pAFwl~~~~~~~~~~~EID 134 (360)
.|.++|+.+. +| .|+|++.+. +++.|.|+.+|+||+||||||+|.+ +|+||||||++.+..+..++|||
T Consensus 28 ~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EID 103 (212)
T cd02175 28 TWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEID 103 (212)
T ss_pred eEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEEE
Confidence 3345566664 45 589998754 3688999999999999999999998 99999999998654344579999
Q ss_pred EEEcCCCCCCCcEEEeeeecCCCCCCCCceEEEcCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEccCCCCCCCCCCC
Q 018153 135 FEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKP 214 (360)
Q Consensus 135 iE~lG~~~g~p~~~qtNv~~~G~~~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~P 214 (360)
||++|++. ..+|+|+|.++.. .....+.+++++.++||+|+|+|+|++|+|||||+++++++..+ ..+|++|
T Consensus 104 iE~~g~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~~p 175 (212)
T cd02175 104 IEFLGKDT---TKVQFNYYTNGVG--GHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPDTP 175 (212)
T ss_pred EEEccCCC---CEeEEEEECCCCC--CCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCCCC
Confidence 99999753 4688998877653 34555677888999999999999999999999999999998643 3689999
Q ss_pred eeEEEEEecCC---CcccCCCccccCCCCCCEEEEEcEEEEe
Q 018153 215 MSLYTTIWDAS---NWATSGGKAKVNYKYAPFTSEFKDFVLE 253 (360)
Q Consensus 215 m~l~lnlw~Gg---~Wat~GG~~~id~~~~Pf~a~~~~~~v~ 253 (360)
|+|+||+|.|+ +|+ | ++|. .+|+.|+|++|||+
T Consensus 176 ~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 99999999995 598 4 3676 89999999999986
No 5
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=9.7e-37 Score=289.71 Aligned_cols=207 Identities=19% Similarity=0.238 Sum_probs=151.9
Q ss_pred CCCCcee--eccCCCCCCcC---cCCCCcCcccC--------CcEEEcCCCCeEEEEEeecC-----------CCeeEEc
Q 018153 37 NAASSLS--SSSAFNLATIS---FDEGYSHLFGD--------GNLIRSPDGKNVRLLLNRFS-----------GSGFVSS 92 (360)
Q Consensus 37 ~~~~~lv--wsDeFng~~~~---f~~~~~~~W~~--------~~v~~~~dG~~l~L~ld~~s-----------gs~~~Sk 92 (360)
..+++|+ |+||||+++++ +.......|++ +|+.+. +| .|.|++.+.. ++.+.|+
T Consensus 16 ~~~W~lv~~f~DeFdg~~ld~~~W~~~~~~~w~~~~~~~y~~~nv~v~-~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~ 93 (258)
T cd02178 16 GGEWELNESVSDEFNGTSLDTSKWNPNNPNGWTGRGPTEFSADNVSVE-DG-NLVLSATRHPGTELGNGYKVTTGSITSK 93 (258)
T ss_pred CCceEEcCcccccCCCCccccccCCCCCCCCCCCCcCceEccCCeEEE-CC-EEEEEEEcCCCCcCCCCccEEEEEEEeC
Confidence 3455999 99999998764 22222246664 344443 55 5888886543 4668888
Q ss_pred ceeEEeEEEEEEEecCCCCCceEEEEEeecCCCCCCCCCeeEE-EEcCCCCC--CCcEEEeeeecCCCC--CC-CC---c
Q 018153 93 KLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDF-EFLGNVAG--KPWRFQTNFYGNGST--AR-GR---E 163 (360)
Q Consensus 93 ~~f~YG~fEariKlp~g~s~G~~pAFwl~~~~~~~~~~~EIDi-E~lG~~~g--~p~~~qtNv~~~G~~--~~-~~---~ 163 (360)
..|+||+||||||+|.+ . .+|||||++.+ ++.++|||| |++|+..+ .+..+|+++|..+.. .+ .+ .
T Consensus 94 ~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~--~~~~gEIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 168 (258)
T cd02178 94 EKVKYGYFEARAKASNL--P-MSSAFWLLSDT--KDSTTEIDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDG 168 (258)
T ss_pred CceEEEEEEEEEEcCCC--C-ccceEEEccCC--CCCCCcEEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccc
Confidence 99999999999999986 4 47999999986 568999999 99997631 245688887642221 11 11 2
Q ss_pred eEEEcCCCCCCCcEEEEEEEc-CCeEEEEEcCeeEEEEEccCCCCCCCC-CCCeeEEEEEecCCCcccCCCccccCCCCC
Q 018153 164 ERYQLWFDPTKQFHRYSILWT-SNNIIFYVDEVPIREVVRSTAMGGDFP-SKPMSLYTTIWDASNWATSGGKAKVNYKYA 241 (360)
Q Consensus 164 ~~~~l~~d~~~dFHtY~i~Wt-p~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~ 241 (360)
..+..+++.+++||+|+|+|+ |++|+|||||++++++++.+. +..+| ++||+||||+++|| |++..+. ...-...
T Consensus 169 ~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~-~~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~ 245 (258)
T cd02178 169 SWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEI-TDGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDS 245 (258)
T ss_pred eeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCccc-CcCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCC
Confidence 234456677899999999999 999999999999999987543 33456 99999999999998 9832121 1122456
Q ss_pred CEEEEEcEEEEe
Q 018153 242 PFTSEFKDFVLE 253 (360)
Q Consensus 242 Pf~a~~~~~~v~ 253 (360)
|..|.||+|||.
T Consensus 246 p~~m~VDYVRvy 257 (258)
T cd02178 246 KNTFYVDYVRVY 257 (258)
T ss_pred CCeEEEEEEEEe
Confidence 999999999996
No 6
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=1.5e-34 Score=269.93 Aligned_cols=199 Identities=23% Similarity=0.334 Sum_probs=151.9
Q ss_pred eccCCCCCCc-CcCCC-----C---------cCcccCCcEEEcCCCCeEEEEEeecC----------CCeeEE--cceeE
Q 018153 44 SSSAFNLATI-SFDEG-----Y---------SHLFGDGNLIRSPDGKNVRLLLNRFS----------GSGFVS--SKLYN 96 (360)
Q Consensus 44 wsDeFng~~~-~f~~~-----~---------~~~W~~~~v~~~~dG~~l~L~ld~~s----------gs~~~S--k~~f~ 96 (360)
|+||||+.++ +-... . ...+.++|+.+. +| .|.|+..+.+ ++.+.| +..|+
T Consensus 1 f~DeFdg~~~~d~~~W~~~~~~~~~~~~~~~~~~~~~~nv~v~-~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~ 78 (235)
T cd08023 1 WSDEFDGDGLPDPSKWTYETGGGGNGNNELQYYTYRPENAYVE-DG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFT 78 (235)
T ss_pred CccccCCCCCCCcccCeEecCCCCCCcceeEEEeCCCCCeEEE-CC-EEEEEEEECCCCCCCcccEEEEEEEECCCccee
Confidence 7899999876 32211 0 012345566664 55 5888876533 456788 67889
Q ss_pred EeEEEEEEEecCCCCCceEEEEEeecCCCC---CCCCCeeEE-EEcCCCCCCCcEEEeeeecCCCC--CCCCceEEEcCC
Q 018153 97 HGFFSAMIKLPSDHTAGLCVAFYTSNGDVF---PKTHDELDF-EFLGNVAGKPWRFQTNFYGNGST--ARGREERYQLWF 170 (360)
Q Consensus 97 YG~fEariKlp~g~s~G~~pAFwl~~~~~~---~~~~~EIDi-E~lG~~~g~p~~~qtNv~~~G~~--~~~~~~~~~l~~ 170 (360)
||+||||||+|.+ .|+||||||++.+.. |+.++|||| |++|+. +..+++++|..+.. .......+.+..
T Consensus 79 yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~ 153 (235)
T cd08023 79 YGRVEARAKLPKG--QGTWPAFWMLGENIKYVGWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPT 153 (235)
T ss_pred CCEEEEEEEccCC--CCceeEEEEcCCCCCCCCCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCC
Confidence 9999999999998 999999999998753 578999999 999985 44788899876653 223444565554
Q ss_pred -CCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEccCCCC-CCCC-CCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEE
Q 018153 171 -DPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMG-GDFP-SKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEF 247 (360)
Q Consensus 171 -d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g-~~~P-~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~ 247 (360)
+..++||+|+|+|+|++|+|||||++|+++++..... ..+| ++||+|+||+++||+|+ |. .......|..|.|
T Consensus 154 ~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~V 229 (235)
T cd08023 154 DDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTNPNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEV 229 (235)
T ss_pred CCcCCCcEEEEEEEECCEEEEEECCEEEEEEcccccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEE
Confidence 6899999999999999999999999999998754321 2345 89999999999999998 32 1344678999999
Q ss_pred cEEEEe
Q 018153 248 KDFVLE 253 (360)
Q Consensus 248 ~~~~v~ 253 (360)
++|||+
T Consensus 230 DyVrvy 235 (235)
T cd08023 230 DYVRVY 235 (235)
T ss_pred EEEEEC
Confidence 999984
No 7
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=5.7e-35 Score=282.15 Aligned_cols=207 Identities=20% Similarity=0.263 Sum_probs=141.3
Q ss_pred eeeccCCCCCCcCcCCC--------CcCcccCCcEEEcC-------CCCeEEEEEeec-------CCCeeEE--cceeEE
Q 018153 42 LSSSSAFNLATISFDEG--------YSHLFGDGNLIRSP-------DGKNVRLLLNRF-------SGSGFVS--SKLYNH 97 (360)
Q Consensus 42 lvwsDeFng~~~~f~~~--------~~~~W~~~~v~~~~-------dG~~l~L~ld~~-------sgs~~~S--k~~f~Y 97 (360)
|||+||||+.+..|..+ ....|++.++++|+ +| .|+|++.+. +++.+.| |..|+|
T Consensus 1 lv~sDeFn~~~~~f~~~d~~~W~~~~~~~wgn~e~q~Y~~~nv~v~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~y 79 (295)
T cd02180 1 LVFSDEFNVDGRTFYPGDDPFWEAVDLHYWATNDLEWYDPDAVTTING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTG 79 (295)
T ss_pred CeeeEccCCCCCccCCCCCcccEEeeCCCCCCCCeEEecCcCeEecCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeC
Confidence 79999999986655322 12356777777654 45 488887653 3456777 466899
Q ss_pred eEEEEEEEecCC-CCCceEEEEEeecCCC----------CCCC------CCeeEE-EEcCCCCC-CCcE---EE------
Q 018153 98 GFFSAMIKLPSD-HTAGLCVAFYTSNGDV----------FPKT------HDELDF-EFLGNVAG-KPWR---FQ------ 149 (360)
Q Consensus 98 G~fEariKlp~g-~s~G~~pAFwl~~~~~----------~~~~------~~EIDi-E~lG~~~g-~p~~---~q------ 149 (360)
|+||||||||.+ ...|+||||||+++.. .||. ++|||| |.+|.+.. ...+ +|
T Consensus 80 G~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~ 159 (295)
T cd02180 80 GYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDA 159 (295)
T ss_pred CEEEEEEECCCCCCCCCcceeeecccccccccccccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccc
Confidence 999999999973 2489999999999631 3675 499999 99985431 1111 11
Q ss_pred ----------eeeecCC----CC-CCCCceE-----EEcCC----CCCCCcEEEEEEEcC-----CeEEEEEcCeeEEEE
Q 018153 150 ----------TNFYGNG----ST-ARGREER-----YQLWF----DPTKQFHRYSILWTS-----NNIIFYVDEVPIREV 200 (360)
Q Consensus 150 ----------tNv~~~G----~~-~~~~~~~-----~~l~~----d~~~dFHtY~i~Wtp-----~~I~fyVDG~~vr~~ 200 (360)
+.+|... .. .++..+. ..++. ...++||+|+|+|+| +.|+|||||++++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~ 239 (295)
T cd02180 160 WYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTI 239 (295)
T ss_pred cccCCCCccceEEecCcccccccccCCccccccccccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEE
Confidence 1112110 00 0011110 11111 136789999999999 899999999999999
Q ss_pred EccCCC--C----CCCCCCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcEEEEe
Q 018153 201 VRSTAM--G----GDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLE 253 (360)
Q Consensus 201 ~~~~~~--g----~~~P~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~~~v~ 253 (360)
+..+.. + ..+|++||+||||+++||+|+ |. +.+-...|..|+||+|||+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~P~ylILNlAvGg~w~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 240 YAKALGPNGNIGWRIIPEEPMYIILNLGISSNFQ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ehHHcCCcccccccccCCCCeEEEEEEEeccccC---CC-CcccCCCCCEEEEEEEEEE
Confidence 865321 1 246799999999999999997 32 3455678999999999996
No 8
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=3.8e-34 Score=261.52 Aligned_cols=191 Identities=30% Similarity=0.451 Sum_probs=152.9
Q ss_pred cCCCCCCcCcCCC---C------cCcccCCcEEEcCCCCeEEEEEeec------CCCeeEE-cceeEEeEEEEEEEecCC
Q 018153 46 SAFNLATISFDEG---Y------SHLFGDGNLIRSPDGKNVRLLLNRF------SGSGFVS-SKLYNHGFFSAMIKLPSD 109 (360)
Q Consensus 46 DeFng~~~~f~~~---~------~~~W~~~~v~~~~dG~~l~L~ld~~------sgs~~~S-k~~f~YG~fEariKlp~g 109 (360)
||||+..++-... . ...|..+|+.+..+| .|.|++.+. .+++|.| +..|+||+||+|||+|.+
T Consensus 1 D~F~~~~~d~~~W~~~~~~~~~~~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 1 DDFDGLALDTSKWTIQDGPSWGGNMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred CCcCCCCcCcccCEEecCCCCCceEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 7899876532211 1 245668888886546 599988754 4678999 999999999999999998
Q ss_pred CCCceEEEEEeecCCCCCCCCCeeEEEEcCCCCCCCcEEEeeeecCCCCC---CCCceEEEcCCCCCCCcEEEEEEEcCC
Q 018153 110 HTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTA---RGREERYQLWFDPTKQFHRYSILWTSN 186 (360)
Q Consensus 110 ~s~G~~pAFwl~~~~~~~~~~~EIDiE~lG~~~g~p~~~qtNv~~~G~~~---~~~~~~~~l~~d~~~dFHtY~i~Wtp~ 186 (360)
.|+|+||||++.+..++..+|||||++|++ +..+++++|..+... ......+.++++..++||+|+|+|+|+
T Consensus 80 --~G~~~afw~~~~~~~~~~~~EIDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~ 154 (210)
T cd00413 80 --PGAVSAFWTYSDDDDPPDGGEIDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPG 154 (210)
T ss_pred --CceEEEEEEeCCCCCCCCCCeEEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCC
Confidence 999999999998754578999999999975 446888888765431 233344566666789999999999999
Q ss_pred eEEEEEcCeeEEEEEccCCCCCCCCCCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcEEEEe
Q 018153 187 NIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLE 253 (360)
Q Consensus 187 ~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~~~v~ 253 (360)
.|+|||||++++++++. .|++||+|+||+|.+++|++ . .+....|..|.|++|+|.
T Consensus 155 ~i~~yvDG~~~~~~~~~------~p~~p~~i~ln~~~~~~~~~--~---~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 155 EITFYVDGVLVATITNQ------VPDDPMNIILNLWSDGGWWW--G---GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred EEEEEECCEEEEEECCC------CCCCCcEEEEEEEECCCCcc--c---CCCCCCCcEEEEEEEEEC
Confidence 99999999999998742 78999999999999999982 2 345789999999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=100.00 E-value=6.1e-34 Score=271.92 Aligned_cols=200 Identities=20% Similarity=0.223 Sum_probs=143.8
Q ss_pred Cceee--ccCCCCCCcC-----cCCCCcCccc---CCcEEEcCCCCeEEEEEeec-------------------CCCeeE
Q 018153 40 SSLSS--SSAFNLATIS-----FDEGYSHLFG---DGNLIRSPDGKNVRLLLNRF-------------------SGSGFV 90 (360)
Q Consensus 40 ~~lvw--sDeFng~~~~-----f~~~~~~~W~---~~~v~~~~dG~~l~L~ld~~-------------------sgs~~~ 90 (360)
.+|+| +||||+++++ ++.+....|+ .+|+.+ .+| .|.|++.+. +++.+.
T Consensus 8 w~Lvw~~sDEFng~~lD~~kW~~~~~~~~~w~~~~~~Nv~v-~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~ 85 (269)
T cd02177 8 WTIKWSRSDEFNKNDPDWAKWNKTGENTGAWKWNNEKNVVI-SNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFK 85 (269)
T ss_pred cEEeecccccCCCCCCCcccceecCCCccCCCCCCccceEE-eCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEE
Confidence 49999 9999998764 3332212343 456665 467 488887653 234566
Q ss_pred EcceeEEeEEEEEEEecC-CCCCceEEEEEeecCCC------CCCCCCeeEE-EEcCCCC---CCCc----EEEeeeecC
Q 018153 91 SSKLYNHGFFSAMIKLPS-DHTAGLCVAFYTSNGDV------FPKTHDELDF-EFLGNVA---GKPW----RFQTNFYGN 155 (360)
Q Consensus 91 Sk~~f~YG~fEariKlp~-g~s~G~~pAFwl~~~~~------~~~~~~EIDi-E~lG~~~---g~p~----~~qtNv~~~ 155 (360)
|+.+|+|||||||||+++ + +|+||||||+++.. .||.++|||| |.+|... +++. ++|+++|.+
T Consensus 86 t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~ 163 (269)
T cd02177 86 SYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDIDYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKEN 163 (269)
T ss_pred ecCcceeeEEEEEEECCCCC--CceEeEEEEeccCCCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecC
Confidence 788899999999999865 6 99999999999631 3788999999 8887541 2233 455555444
Q ss_pred CCCCCC--------CceEEEcCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEccCCCCCCCCCCCeeEEEEEecCC--
Q 018153 156 GSTARG--------REERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDAS-- 225 (360)
Q Consensus 156 G~~~~~--------~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlw~Gg-- 225 (360)
|..... ....+.+++|++++||+|+|+|+|++|+|||||++++++.+ .+.+.||.|.+++-.+.
T Consensus 164 g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~W~~~~i~~yvDg~~~~~~~~------~~w~~~~~~~~~~~~~~p~ 237 (269)
T cd02177 164 GQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCNVNQDEIIWYVDGVEVGRKPN------KYWHRPMNVTLSLGLRKPF 237 (269)
T ss_pred CcccccCccccccccceEEccCCCCccCcEEEEEEEeCCEEEEEECCEEEEEEcC------CccccccEEeeccccCcch
Confidence 432111 11235677889999999999999999999999999999874 24478888888875432
Q ss_pred -------CcccCCCccccCCCCCCEEEEEcEEEEe
Q 018153 226 -------NWATSGGKAKVNYKYAPFTSEFKDFVLE 253 (360)
Q Consensus 226 -------~Wat~GG~~~id~~~~Pf~a~~~~~~v~ 253 (360)
.|+ |+ ..+.+.+|-.|.||+|||.
T Consensus 238 ~~~~~~~~~~--~~--~~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 238 VKFFDNKNNA--KA--REKASDFPTSMYVDYVRVW 268 (269)
T ss_pred hhhhccccCC--CC--CCccCcCCceEEEEEEEEe
Confidence 355 44 2456789999999999985
No 10
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=4.2e-34 Score=256.65 Aligned_cols=176 Identities=32% Similarity=0.540 Sum_probs=147.1
Q ss_pred CCcCcccCCcEEEcCCCCeEEEEEee-----cCCCeeEEcceeEEeEEEEEEEecCCCCCceEEEEEeecCCCCCCCCCe
Q 018153 58 GYSHLFGDGNLIRSPDGKNVRLLLNR-----FSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDE 132 (360)
Q Consensus 58 ~~~~~W~~~~v~~~~dG~~l~L~ld~-----~sgs~~~Sk~~f~YG~fEariKlp~g~s~G~~pAFwl~~~~~~~~~~~E 132 (360)
.+.+.|.++||.+.. |+.|+|++++ .++++|.|+..++||+||||||+|.+ .|+||||||.+.+. ++.++|
T Consensus 4 ~~~~~~~~~nv~~~~-g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~-~~~~~E 79 (185)
T PF00722_consen 4 QYNCTWSPDNVTVED-GGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADG-WPDGGE 79 (185)
T ss_dssp TEEEEETCCGEEEET-TSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGS-TTTTEE
T ss_pred ceEEeeCCCcEEEcC-CCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEeccccccccc-ccchhh
Confidence 456789999999964 4479999987 56888999999999999999999998 99999999976444 789999
Q ss_pred eEEEEcCCCCCCCcEEEeeeecCCCCCCCCceEEEcCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEccCCCCCCCCC
Q 018153 133 LDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPS 212 (360)
Q Consensus 133 IDiE~lG~~~g~p~~~qtNv~~~G~~~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 212 (360)
||||++|+.+. .+++|+|..+.........+.+..++.++||+|+|+|+|+.|+|||||++++++......+.+||.
T Consensus 80 IDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 99999998543 699999988774211245567788899999999999999999999999999999987654446895
Q ss_pred -CCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcEEE
Q 018153 213 -KPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFV 251 (360)
Q Consensus 213 -~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~~~ 251 (360)
.||.|.+++|.|++|++..| .|+||+||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 99999999999999986555 56666665
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=100.00 E-value=2.3e-33 Score=266.76 Aligned_cols=207 Identities=17% Similarity=0.177 Sum_probs=138.7
Q ss_pred CceeeccCCCCCC---cC---c--CCCCcCcccCCcEEEcC----------CCCeEEEEEeecC-----CCeeEEccee-
Q 018153 40 SSLSSSSAFNLAT---IS---F--DEGYSHLFGDGNLIRSP----------DGKNVRLLLNRFS-----GSGFVSSKLY- 95 (360)
Q Consensus 40 ~~lvwsDeFng~~---~~---f--~~~~~~~W~~~~v~~~~----------dG~~l~L~ld~~s-----gs~~~Sk~~f- 95 (360)
.+|+|+||||+++ ++ + +.+....|++++.+.|+ +| .|.|+..+.. ++.|.|+.++
T Consensus 2 ~~lvw~DeFdg~~~~~~d~~~W~~~~~~~~~~~n~e~q~y~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~ 80 (259)
T cd02182 2 WTLVWSDDFDGSAGSLPSSSKWIIDTGTSANWGTGEIQTYTNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDF 80 (259)
T ss_pred ceeEEeeccCCCCCCCCCcCcCEEecCCCCCCCCceeEeecCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccc
Confidence 3699999999963 22 1 12211368776666653 45 5778776543 3556676554
Q ss_pred -EE----eEEEEEEEecCCC---CCceEEEEEeecCCC-----CCCCCCeeEE-EEcCCCCCCCcEEEeeeecCCCCC-C
Q 018153 96 -NH----GFFSAMIKLPSDH---TAGLCVAFYTSNGDV-----FPKTHDELDF-EFLGNVAGKPWRFQTNFYGNGSTA-R 160 (360)
Q Consensus 96 -~Y----G~fEariKlp~g~---s~G~~pAFwl~~~~~-----~~~~~~EIDi-E~lG~~~g~p~~~qtNv~~~G~~~-~ 160 (360)
.| |+||||||+|.+. ..|+||||||++.+. .||.++|||| |..|.. +.+.++ +|...... .
T Consensus 81 ~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~~~~~WP~~GEIDImE~~~~~---~~~~~t-~H~~~~~~~~ 156 (259)
T cd02182 81 AAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRGNGTNWPACGELDIMENVNGL---STGYGT-LHCGVAPGGP 156 (259)
T ss_pred cccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccCCCCCCCccceeeeeeccCCC---CceEEE-EeeCCCCCCC
Confidence 33 4999999999841 379999999999752 3788999999 999864 334444 44321100 0
Q ss_pred CCceE-EE-cCCCCCCCcEEEEEEEcC-----CeEEEEEcCeeEEEEEccCCCC-CC---CCCCCeeEEEEEecCCCccc
Q 018153 161 GREER-YQ-LWFDPTKQFHRYSILWTS-----NNIIFYVDEVPIREVVRSTAMG-GD---FPSKPMSLYTTIWDASNWAT 229 (360)
Q Consensus 161 ~~~~~-~~-l~~d~~~dFHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~~g-~~---~P~~Pm~l~lnlw~Gg~Wat 229 (360)
.++.. .. ......++||+|+|+|++ ++|+|||||+++++++.....+ .. .|++||+||||+++||+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~- 235 (259)
T cd02182 157 CNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP- 235 (259)
T ss_pred CccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC-
Confidence 11111 10 011235799999999997 9999999999999998642211 12 3489999999999999998
Q ss_pred CCCccccCCCCCCEEEEEcEEEEe
Q 018153 230 SGGKAKVNYKYAPFTSEFKDFVLE 253 (360)
Q Consensus 230 ~GG~~~id~~~~Pf~a~~~~~~v~ 253 (360)
|..-...-...|..|.||+|||+
T Consensus 236 -~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 236 -GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred -CCCCcccccCCCceEEEEEEEEe
Confidence 32101112457899999999996
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.98 E-value=2.6e-31 Score=260.91 Aligned_cols=139 Identities=20% Similarity=0.171 Sum_probs=102.8
Q ss_pred eeEE--cceeEEeEEEEEEEecCCCCCceEEEEEeecCCC---CCCCCCeeEE-EEcCCCCCCC-------cEEEeeeec
Q 018153 88 GFVS--SKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDV---FPKTHDELDF-EFLGNVAGKP-------WRFQTNFYG 154 (360)
Q Consensus 88 ~~~S--k~~f~YG~fEariKlp~g~s~G~~pAFwl~~~~~---~~~~~~EIDi-E~lG~~~g~p-------~~~qtNv~~ 154 (360)
.|.| +..|+|||||||||||.| .|+||||||++.+. .||.++|||| |.+|+....+ ..++.++|.
T Consensus 103 ri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH~ 180 (330)
T cd08024 103 RLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTLHW 180 (330)
T ss_pred EEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEEEe
Confidence 3555 356899999999999999 99999999999863 3789999999 9999754221 235555663
Q ss_pred CCCCCC--CCc--eEE-EcCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEccC-------------------CCCCCC
Q 018153 155 NGSTAR--GRE--ERY-QLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRST-------------------AMGGDF 210 (360)
Q Consensus 155 ~G~~~~--~~~--~~~-~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------~~g~~~ 210 (360)
...... .+. ... ....+.+++||+|+|+|+|++|+|||||+++++++... ..+..+
T Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~a 260 (330)
T cd08024 181 GPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKMA 260 (330)
T ss_pred CCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCcCC
Confidence 221110 011 111 12345678999999999999999999999999998521 012356
Q ss_pred C-CCCeeEEEEEecCCCcc
Q 018153 211 P-SKPMSLYTTIWDASNWA 228 (360)
Q Consensus 211 P-~~Pm~l~lnlw~Gg~Wa 228 (360)
| ++||||||||++||.|.
T Consensus 261 PFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 261 PFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCEEEEEEEEecCCCC
Confidence 8 99999999999999985
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.98 E-value=3.9e-31 Score=258.60 Aligned_cols=179 Identities=15% Similarity=0.119 Sum_probs=122.7
Q ss_pred eeeccCCCCCCcC-----cCCCCcCcccCCcEEEcC---------CCCeEEEEEeec-----------------------
Q 018153 42 LSSSSAFNLATIS-----FDEGYSHLFGDGNLIRSP---------DGKNVRLLLNRF----------------------- 84 (360)
Q Consensus 42 lvwsDeFng~~~~-----f~~~~~~~W~~~~v~~~~---------dG~~l~L~ld~~----------------------- 84 (360)
|||+||||++.++ ++.+. .+|++.+.++|+ +| .|.|+....
T Consensus 1 Lvf~DeFd~~~ld~~~W~~e~~~-~g~gn~Efq~Yt~~~~N~~v~dG-~L~I~p~~~~~~~~~~~~~~~~~~~~~cT~~~ 78 (321)
T cd02179 1 LIFEENFNGALLDLNKWTIEVRF-PGEPDYEFVVYDDAPENLFVKDG-NLVIEPTLLEEKFGEGFVREGLDLLERCTGQL 78 (321)
T ss_pred CeeEEcCCCCCCCcccCeeeccC-CCCCcCceEEecCCCCceEEeCC-eEEEEEeecccccCcccccccccccccccccc
Confidence 7999999987554 22222 467888877775 34 366654321
Q ss_pred ------------------CCCeeEEc--ceeEEeEEEEEEEecCCCCCceEEEEEeecCCC-C--C-CCCCeeEE-EEcC
Q 018153 85 ------------------SGSGFVSS--KLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDV-F--P-KTHDELDF-EFLG 139 (360)
Q Consensus 85 ------------------sgs~~~Sk--~~f~YG~fEariKlp~g~s~G~~pAFwl~~~~~-~--~-~~~~EIDi-E~lG 139 (360)
.++.|.|+ ..|+|||||||||||.| .|+||||||++.+. + | |.++|||| |.+|
T Consensus 79 ~~~~C~~~~~~~~i~~P~~Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~G 156 (321)
T cd02179 79 GTTECRRDARGSSILPPVVSARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARG 156 (321)
T ss_pred ccccccccccccccCCCeeeeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCC
Confidence 12345554 46889999999999999 99999999999874 2 3 78999999 9999
Q ss_pred CCCCC---C----cEEEeeeecCCCCCCCCce---EEEcCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEccCC----
Q 018153 140 NVAGK---P----WRFQTNFYGNGSTARGREE---RYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTA---- 205 (360)
Q Consensus 140 ~~~g~---p----~~~qtNv~~~G~~~~~~~~---~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~---- 205 (360)
|.... . .+++...|..... ..+.. ......+.+++||+|+|+|+|+.|+|||||+++++++....
T Consensus 157 n~~~~~~g~~~~~~~l~~g~~~~~~~-~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~ 235 (321)
T cd02179 157 NAVLRADGTDIGGKKLYGGPVLTDAE-PHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSE 235 (321)
T ss_pred CCccccCCceeccceEEcccccCCCc-ccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCcccc
Confidence 85210 0 1222222211110 00110 01112356789999999999999999999999999986321
Q ss_pred -----------CC-CCCC-CCCeeEEEEEecCC
Q 018153 206 -----------MG-GDFP-SKPMSLYTTIWDAS 225 (360)
Q Consensus 206 -----------~g-~~~P-~~Pm~l~lnlw~Gg 225 (360)
.| ...| ++||||+|||++||
T Consensus 236 ~~~~~~~~~w~~g~~~aPFD~~FyliLNlAVGG 268 (321)
T cd02179 236 AANNPAASRWLGGTVMAPFDKEFYLSLGVGVGG 268 (321)
T ss_pred ccccccCccccccCccCCCCCCeEEEEEEEecC
Confidence 11 2457 99999999999988
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=8.4e-26 Score=223.14 Aligned_cols=197 Identities=23% Similarity=0.386 Sum_probs=146.4
Q ss_pred ceeeccCCCCCCcC-cCCC---CcCcccCCcEEEcCCCCeEEEEEee-------cCCCeeEEcce--eEEeEEEEEEEec
Q 018153 41 SLSSSSAFNLATIS-FDEG---YSHLFGDGNLIRSPDGKNVRLLLNR-------FSGSGFVSSKL--YNHGFFSAMIKLP 107 (360)
Q Consensus 41 ~lvwsDeFng~~~~-f~~~---~~~~W~~~~v~~~~dG~~l~L~ld~-------~sgs~~~Sk~~--f~YG~fEariKlp 107 (360)
.|+..|||+....+ ++.+ ..+.|...++.+..+| .|.|.+++ +.++.++|..+ |+||++|+|||+|
T Consensus 50 ~l~~~de~~w~~~~~~~~g~~~~~~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~ 128 (355)
T COG2273 50 DLVFSDEFNWYVNPGYSDGIATKNLTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLP 128 (355)
T ss_pred CcccccccccccCCcccCcccccccceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccC
Confidence 67777777765432 3222 2346777777665544 67777764 45677888877 8999999999999
Q ss_pred CCCCCceEEEEEeecCCC-CCCCCCeeEEEEcCCCCCCCcEEEeeeecCCCCCCCCceEEEcCC-CCCCCcEEEEEEEcC
Q 018153 108 SDHTAGLCVAFYTSNGDV-FPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWF-DPTKQFHRYSILWTS 185 (360)
Q Consensus 108 ~g~s~G~~pAFwl~~~~~-~~~~~~EIDiE~lG~~~g~p~~~qtNv~~~G~~~~~~~~~~~l~~-d~~~dFHtY~i~Wtp 185 (360)
.+ .|+||||||+++.. ++..++|||||++|++.. +..+|+|.+.++.+ +.+....+++ +..++||+|+++|.+
T Consensus 129 ~~--~G~wpafw~~~g~~~dg~wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~--~~~~~~~~~~~~~~~~fhty~~~W~~ 203 (355)
T COG2273 129 LV--SGLWPAFWTLTGLSRDGGWPDEIDIEDLGGQST-NTVIQTNHYQGGGG--GTSKLVDHPNPDAIDGFHTYAFLWGE 203 (355)
T ss_pred CC--cccceeeEeccCcccCCCCCcceeeeeecCCCc-ccceEeeeeccCCC--CceecccccCCCcccccccceeeccC
Confidence 88 99999999999854 355679999999997653 34699999888774 3444444555 788999999999999
Q ss_pred CeEEEEEcCeeEEEEEccCCCCCCCCCCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcE
Q 018153 186 NNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKD 249 (360)
Q Consensus 186 ~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~ 249 (360)
+.|+|||||++++++... ...|..||++++|+|.++.+.+.-| .......|..+.+..
T Consensus 204 ~~i~Wyvdg~~~~~~~~p----~~~~~~p~y~~~nl~~~~~~~~~~~--~~~~~~~~~~~~~~~ 261 (355)
T COG2273 204 DSISWYVDGAPVATATKP----DYIPQIPFYVLVNLWMGGYAGGPPG--EALSAGSPLNIDYYR 261 (355)
T ss_pred CeEEEEEcceEeeEEecc----ccCcCCcceeEEeecccCccCCCcc--ccccCCcceEeeeee
Confidence 999999999999999853 2358999999999999987653322 233334455444433
No 15
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.82 E-value=2.2e-19 Score=182.35 Aligned_cols=208 Identities=21% Similarity=0.278 Sum_probs=139.3
Q ss_pred ceeeccCCCCCCcCcCCCCcCccc--------CCcEEEc-------CCCCeEEEEEeecC-------CCeeEEcce--eE
Q 018153 41 SLSSSSAFNLATISFDEGYSHLFG--------DGNLIRS-------PDGKNVRLLLNRFS-------GSGFVSSKL--YN 96 (360)
Q Consensus 41 ~lvwsDeFng~~~~f~~~~~~~W~--------~~~v~~~-------~dG~~l~L~ld~~s-------gs~~~Sk~~--f~ 96 (360)
+||+|||||..+.+|..+.+..|. ++++++| .+| .|+|++++.. ++-++|=++ |+
T Consensus 120 ~LvfSDEFn~~gRtF~~gdDp~w~a~~~~y~~t~dle~Y~p~~vtt~~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCft 198 (504)
T PF03935_consen 120 KLVFSDEFNTDGRTFYPGDDPFWTAVDLHYWATNDLEWYDPDAVTTENG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFT 198 (504)
T ss_pred eEEEehhhCCCCCccCCCCccceecccccccCCCcceeecCCCcEeeCC-EEEEEEEeeeccceeEecchhhhhhhhhcC
Confidence 899999999999999877666554 4445544 245 6999998543 223445344 56
Q ss_pred EeEEEEEEEecCC-CCCceEEEEEeecCCC----------CC--------------------------------------
Q 018153 97 HGFFSAMIKLPSD-HTAGLCVAFYTSNGDV----------FP-------------------------------------- 127 (360)
Q Consensus 97 YG~fEariKlp~g-~s~G~~pAFwl~~~~~----------~~-------------------------------------- 127 (360)
-|++|++++||.. +..|+|||||++++-. .|
T Consensus 199 gG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~ged 278 (504)
T PF03935_consen 199 GGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTDGMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGED 278 (504)
T ss_pred CcEEEEEEECCCCCcCCCcCchhhhccccCccccccccCceecccccccCcccccCccccCccccCCCCcCcCCCCCCCc
Confidence 7999999999874 4689999999987610 00
Q ss_pred -------CCCCeeEE-EEcCCCC-CCCc---EEEee--------------eecCCCC--C---CCCceE-E----EcCCC
Q 018153 128 -------KTHDELDF-EFLGNVA-GKPW---RFQTN--------------FYGNGST--A---RGREER-Y----QLWFD 171 (360)
Q Consensus 128 -------~~~~EIDi-E~lG~~~-g~p~---~~qtN--------------v~~~G~~--~---~~~~~~-~----~l~~d 171 (360)
....|||| |-..... +.+. .+|.. +|....+ | ++.-|+ + .+..+
T Consensus 279 hp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~ 358 (504)
T PF03935_consen 279 HPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFDIWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNND 358 (504)
T ss_pred CCCCCCCCCCCceeEEeeeecccccccccccceeecccccCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCcc
Confidence 12359999 9654321 1111 12221 1110000 0 111121 1 11111
Q ss_pred -----CCCCcEEEEEEEcC-----CeEEEEEcCeeEEEEEccCCC--C----CCCCCCCeeEEEEEecCCCcccCCCccc
Q 018153 172 -----PTKQFHRYSILWTS-----NNIIFYVDEVPIREVVRSTAM--G----GDFPSKPMSLYTTIWDASNWATSGGKAK 235 (360)
Q Consensus 172 -----~~~dFHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~~--g----~~~P~~Pm~l~lnlw~Gg~Wat~GG~~~ 235 (360)
...+||+|++||.| ..|+|+|||+++.++...... + ..+|..||+||+||....+|+ .
T Consensus 359 ~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip~EPMyIIlNlgmS~sf~------~ 432 (504)
T PF03935_consen 359 WYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIPEEPMYIILNLGMSSSFG------Y 432 (504)
T ss_pred ccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccCcCCceeeeccccccccC------c
Confidence 23789999999987 499999999999999865321 1 357899999999999999996 4
Q ss_pred cCCC--CCCEEEEEcEEEEeec
Q 018153 236 VNYK--YAPFTSEFKDFVLEGC 255 (360)
Q Consensus 236 id~~--~~Pf~a~~~~~~v~~c 255 (360)
|||. .+|.+|.||+|||+.=
T Consensus 433 vd~~~L~FP~~M~IDYVRVYQ~ 454 (504)
T PF03935_consen 433 VDWNHLCFPATMRIDYVRVYQP 454 (504)
T ss_pred cccccccccceEEEeEEEEecc
Confidence 7776 6888999999999754
No 16
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.76 E-value=5.8e-19 Score=127.99 Aligned_cols=45 Identities=40% Similarity=0.778 Sum_probs=37.1
Q ss_pred ccccccccCCCCCHHHHHHHHHHhhcCeeEeecccCCCCCCC-CCCc
Q 018153 272 DSRLAEKGLSVITPAGRRAMRRFRERYIYYSYCYDTIRYPVP-LPEC 317 (360)
Q Consensus 272 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~YdYC~D~~R~~~~-p~ec 317 (360)
..||+++.++ ||++|+++|+|||+||||||||+|++|||.. |+||
T Consensus 6 ~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 6 KSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred cccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 3577777777 9999999999999999999999999999985 9999
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.59 E-value=1.3e-14 Score=139.49 Aligned_cols=150 Identities=23% Similarity=0.299 Sum_probs=97.6
Q ss_pred EEcCCCCeEEEEEeecC---------CCeeEEcceeEEeEEEEEE-EecCCCCCceEEEEEeecCCCCCCCCCeeEE-EE
Q 018153 69 IRSPDGKNVRLLLNRFS---------GSGFVSSKLYNHGFFSAMI-KLPSDHTAGLCVAFYTSNGDVFPKTHDELDF-EF 137 (360)
Q Consensus 69 ~~~~dG~~l~L~ld~~s---------gs~~~Sk~~f~YG~fEari-Klp~g~s~G~~pAFwl~~~~~~~~~~~EIDi-E~ 137 (360)
.+.++| .|.|.+|+.+ ++.+.|+.+|.+|+||+|+ |||.+ .|+||||||++.. ||..+|||| |.
T Consensus 44 ~~v~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~--WP~~GEIDImE~ 118 (293)
T cd02181 44 AYVNSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPN--WPNGGEIDIIEG 118 (293)
T ss_pred eEeeCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCC--CCCCCcEEEEec
Confidence 344455 5888887542 3457788899999999997 99998 9999999999884 899999999 99
Q ss_pred cCCCCCCCcEEEeeeecCCCC--------C-------------CCCceEE--------EcCCCCCCCcEEEEEEEcCCeE
Q 018153 138 LGNVAGKPWRFQTNFYGNGST--------A-------------RGREERY--------QLWFDPTKQFHRYSILWTSNNI 188 (360)
Q Consensus 138 lG~~~g~p~~~qtNv~~~G~~--------~-------------~~~~~~~--------~l~~d~~~dFHtY~i~Wtp~~I 188 (360)
++.... .+..+|+.+.. . ....-.+ -.+|+ ..+=-+|+++|+.+.|
T Consensus 119 vn~~~~----n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I 193 (293)
T cd02181 119 VNLQTS----NQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGI 193 (293)
T ss_pred cCCCCc----eEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcE
Confidence 986332 33334432110 0 0000001 11222 2344799999999999
Q ss_pred EEEE---cCeeEEEEEccCCC---C---CCCCC---------CCeeEEEEEecCCCcc
Q 018153 189 IFYV---DEVPIREVVRSTAM---G---GDFPS---------KPMSLYTTIWDASNWA 228 (360)
Q Consensus 189 ~fyV---DG~~vr~~~~~~~~---g---~~~P~---------~Pm~l~lnlw~Gg~Wa 228 (360)
+.+. +.+|--....+..+ | ..||. +++.|++|+-.-|+||
T Consensus 194 ~vWff~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 194 KVWFFPRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred EEEEecCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 8654 33332211111110 2 34664 8999999999999999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=92.26 E-value=4.2 Score=33.54 Aligned_cols=67 Identities=10% Similarity=0.185 Sum_probs=40.8
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEEEccCCCCCCCCCCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcEEEE
Q 018153 173 TKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVL 252 (360)
Q Consensus 173 ~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~~~v 252 (360)
...||..++.|+.+.+.+||||+++.+...... ....+..+++ .|+.. ....+|...+++|+|
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~-~~~~~~~~~~------iG~~~----------~~~~~~~g~i~~~~i 146 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN-ISLNSNGPLF------IGGSG----------GGSSPFNGYIDDLRI 146 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS-SSTTSCCEEE------ESS-S----------TT--B-EEEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC-cCCCCcceEE------EeecC----------CCCCceEEEEEEEEE
Confidence 588999999999999999999998876543211 0011122222 23222 236789999999999
Q ss_pred eecc
Q 018153 253 EGCP 256 (360)
Q Consensus 253 ~~c~ 256 (360)
...+
T Consensus 147 ~~~a 150 (157)
T PF13385_consen 147 YNRA 150 (157)
T ss_dssp ESS-
T ss_pred ECcc
Confidence 7554
No 19
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=91.49 E-value=0.84 Score=43.19 Aligned_cols=81 Identities=17% Similarity=0.332 Sum_probs=50.7
Q ss_pred EEEEEEEecCCC-----CCceEEEEEeecCCC-----C-------C-CCCCeeEE-EEcCCCCCCCcEEEeeeec-CCCC
Q 018153 99 FFSAMIKLPSDH-----TAGLCVAFYTSNGDV-----F-------P-KTHDELDF-EFLGNVAGKPWRFQTNFYG-NGST 158 (360)
Q Consensus 99 ~fEariKlp~g~-----s~G~~pAFwl~~~~~-----~-------~-~~~~EIDi-E~lG~~~g~p~~~qtNv~~-~G~~ 158 (360)
-|-.+.+||... ...=.||+||++..+ | | ..|+|+|| |.|... +. .+.+.+|. +|..
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCcc
Confidence 367788888831 234589999998753 2 3 36999999 999763 22 46666665 3421
Q ss_pred ----CCCCceEEEcCCCCCCCcEEEEEEEcC
Q 018153 159 ----ARGREERYQLWFDPTKQFHRYSILWTS 185 (360)
Q Consensus 159 ----~~~~~~~~~l~~d~~~dFHtY~i~Wtp 185 (360)
.++...-+ -.|++..-++++.++.
T Consensus 179 ~~~~g~G~~~yf---~RPt~~~~k~aVifd~ 206 (235)
T PF10287_consen 179 DINGGGGSSDYF---KRPTSGTMKVAVIFDS 206 (235)
T ss_pred ccCCCCCCCCcc---cCCCCCCeEEEEEEcC
Confidence 11111111 1367788889988864
No 20
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=91.33 E-value=5.9 Score=34.79 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=71.0
Q ss_pred eccCCCCCCcC-cCCCCcCcccCCcEEEcCCCCeEEEEE--eecCCCeeEEcceeEEeEEEEEEEecCCCCCceEEEEEe
Q 018153 44 SSSAFNLATIS-FDEGYSHLFGDGNLIRSPDGKNVRLLL--NRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYT 120 (360)
Q Consensus 44 wsDeFng~~~~-f~~~~~~~W~~~~v~~~~dG~~l~L~l--d~~sgs~~~Sk~~f~YG~fEariKlp~g~s~G~~pAFwl 120 (360)
|..=|||.+++ |... ...|...+..+ .|| .|. .. ....++-+.++..|.=..+++.+|+.++ | -..+++
T Consensus 2 ~~~lf~g~~l~gW~~~-~~~~~~~~~~v-~dG-~l~-~~~~~~~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~ 73 (185)
T PF06439_consen 2 WISLFNGKDLDGWKIY-GGGWFEGGWSV-KDG-VLV-SNGSSGSGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFF 73 (185)
T ss_dssp EEESS-SSCGTTEEET-TSSSETTTEEE-ETT-EEE--GGGGESSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEE
T ss_pred CEEeECCCCHHHCeeC-CCCccccCcEe-eCC-EEE-ecccCCCCcceEEECCccccEEEEEEEEECCC---C-CeEEEE
Confidence 56678887652 2211 11222222333 466 233 11 1223455778777777788999998553 2 334444
Q ss_pred ecC-C---CCCCCCCeeEEEEcCCCCCCCcEEEeeeecCCCCCCC--CceEE-EcCCCCCCCcEEEEEEEcCCeEEEEEc
Q 018153 121 SNG-D---VFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARG--REERY-QLWFDPTKQFHRYSILWTSNNIIFYVD 193 (360)
Q Consensus 121 ~~~-~---~~~~~~~EIDiE~lG~~~g~p~~~qtNv~~~G~~~~~--~~~~~-~l~~d~~~dFHtY~i~Wtp~~I~fyVD 193 (360)
... . ......-|+.|.--+..... ....|..... ..... .....+..+||++.|.-..++|+.+||
T Consensus 74 r~~~~~~~~~~~~gy~~~i~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vn 146 (185)
T PF06439_consen 74 RAQSPGDGQDWNNGYEFQIDNSGGGTGL-------PNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVN 146 (185)
T ss_dssp EESSECCSSGGGTSEEEEEE-TTTCSTT-------TTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEET
T ss_pred EeccccCCCCcceEEEEEEECCCCccCC-------CCccceEEEeccccccccccccCCCCceEEEEEEEECCEEEEEEC
Confidence 333 1 11235567776332211000 0111211000 00000 011234679999999999999999999
Q ss_pred CeeEEEEEcc
Q 018153 194 EVPIREVVRS 203 (360)
Q Consensus 194 G~~vr~~~~~ 203 (360)
|++|.+++..
T Consensus 147 G~~v~~~~d~ 156 (185)
T PF06439_consen 147 GKPVADFTDP 156 (185)
T ss_dssp TEEEEEEETT
T ss_pred CEEEEEEEcC
Confidence 9999998853
No 21
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=89.25 E-value=1.7 Score=39.73 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=24.9
Q ss_pred CCcEEEEEEEcC--CeEEEEEcCeeEEEEE
Q 018153 174 KQFHRYSILWTS--NNIIFYVDEVPIREVV 201 (360)
Q Consensus 174 ~dFHtY~i~Wtp--~~I~fyVDG~~vr~~~ 201 (360)
.+||.|.|...| ..-.|||||++|.+..
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 579999999987 8999999999999853
No 22
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=87.55 E-value=16 Score=30.80 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=45.4
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEEccCCCCCCCC-CCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEc
Q 018153 172 PTKQFHRYSILWTS--NNIIFYVDEVPIREVVRSTAMGGDFP-SKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFK 248 (360)
Q Consensus 172 ~~~dFHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~ 248 (360)
+...||..++.++. .+|++||||+++.+.... ..+ ..|+.|-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999988 799999999998654321 112 334333211111 11 12457889999
Q ss_pred EEEEeeccCC
Q 018153 249 DFVLEGCPVD 258 (360)
Q Consensus 249 ~~~v~~c~~~ 258 (360)
+|+|..++-+
T Consensus 122 evriy~~aLs 131 (133)
T smart00560 122 EVRVYNRALT 131 (133)
T ss_pred EEEEeccccC
Confidence 9999987643
No 23
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=85.41 E-value=15 Score=33.06 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=26.3
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEEE
Q 018153 173 TKQFHRYSILWTSNNIIFYVDEVPIREVV 201 (360)
Q Consensus 173 ~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~ 201 (360)
...||..+|.+..+.|++|||++++.+..
T Consensus 116 dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 116 DGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred cCCceEEEEEEeCCEEEEEECCcccccee
Confidence 56899999999999999999999987764
No 24
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=82.87 E-value=14 Score=33.96 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=41.1
Q ss_pred CCCCcEEEEEEEc--CCeEEEEEcCeeEEEEEccCCCCCCCCCCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcE
Q 018153 172 PTKQFHRYSILWT--SNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKD 249 (360)
Q Consensus 172 ~~~dFHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~ 249 (360)
....||...+.|+ ..++.+||||+++.. . .-..|..++. .-.|+|.-- -+.+ ||. .+ ....|.-.+++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~~-~G~lvlGq~-qd~~---gg~--f~-~~~~f~G~i~~ 157 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVKP-GGSIILGQE-QDSY---GGG--FD-ATQSFVGEIGD 157 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEECC-CCEEEEEec-ccCC---CCC--CC-CCcceeEEEee
Confidence 3578999999997 457999999998621 1 1111222332 223333331 1223 342 23 23457788888
Q ss_pred EEEee
Q 018153 250 FVLEG 254 (360)
Q Consensus 250 ~~v~~ 254 (360)
|+|-.
T Consensus 158 v~iw~ 162 (206)
T smart00159 158 LNMWD 162 (206)
T ss_pred eEEec
Confidence 87743
No 25
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=82.71 E-value=13 Score=33.78 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=42.2
Q ss_pred CCCCcEEEEEEEc--CCeEEEEEcCeeEEEEEccCCCCCCCCCCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcE
Q 018153 172 PTKQFHRYSILWT--SNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKD 249 (360)
Q Consensus 172 ~~~dFHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~ 249 (360)
....||...+.|+ ...+.+||||+++..-. -..+..++..+ .|+|.- .-...||. .+ ....|.=.+++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~~g-~l~lG~----~q~~~gg~--~~-~~~~f~G~I~~ 157 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGPGG-SIILGQ----EQDSYGGG--FD-ATQSFVGEISD 157 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECCCC-eEEEee----cccCCCCC--CC-CCcceEEEEce
Confidence 4678999999998 45799999999875432 11122233222 233321 11111342 23 23468888888
Q ss_pred EEEee
Q 018153 250 FVLEG 254 (360)
Q Consensus 250 ~~v~~ 254 (360)
|+|..
T Consensus 158 v~iw~ 162 (201)
T cd00152 158 VNMWD 162 (201)
T ss_pred eEEEc
Confidence 88744
No 26
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=79.71 E-value=11 Score=40.85 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=42.1
Q ss_pred EcCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEccCCCCCCCCCCCeeEEEEEecCCCcc
Q 018153 167 QLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWA 228 (360)
Q Consensus 167 ~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlw~Gg~Wa 228 (360)
.|+--...+||.|.+.-+=-.++.||||+-+.-..-. .+||-.|.++-..|=+|-=|.
T Consensus 435 kl~qVCD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwplHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 435 KLPQVCDNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPLHPSKIETQLVVGACWQ 492 (952)
T ss_pred cchhhhhhhhheeEEeecCceEEEEEcCcccCCceec----cCCccCcccccceeEEeeecc
Confidence 3433356899999999975559999999865432221 468977777777777887887
No 27
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=76.85 E-value=42 Score=27.89 Aligned_cols=85 Identities=20% Similarity=0.163 Sum_probs=48.7
Q ss_pred EeEEEEEEEecCCCCCceEEEEEeecCCCCCCCCCeeEEEEcCCCCCCCcEEEeeeecCCCCCCCCceEEEcCC-CCCCC
Q 018153 97 HGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWF-DPTKQ 175 (360)
Q Consensus 97 YG~fEariKlp~g~s~G~~pAFwl~~~~~~~~~~~EIDiE~lG~~~g~p~~~qtNv~~~G~~~~~~~~~~~l~~-d~~~d 175 (360)
...+++++|.... .|+. |++-+. ...+-|-+|.... .+...+.. |. ....+.... -....
T Consensus 21 ~~~i~~~frt~~~--~g~l--~~~~~~----~~~~~~~l~l~~g------~l~~~~~~-g~----~~~~~~~~~~v~dg~ 81 (151)
T cd00110 21 RLSISFSFRTTSP--NGLL--LYAGSQ----NGGDFLALELEDG------RLVLRYDL-GS----GSLVLSSKTPLNDGQ 81 (151)
T ss_pred eeEEEEEEEeCCC--CeEE--EEecCC----CCCCEEEEEEECC------EEEEEEcC-Cc----ccEEEEccCccCCCC
Confidence 4567777777664 6654 333222 1345566666642 23332221 21 122232221 23567
Q ss_pred cEEEEEEEcCCeEEEEEcCeeEEEE
Q 018153 176 FHRYSILWTSNNIIFYVDEVPIREV 200 (360)
Q Consensus 176 FHtY~i~Wtp~~I~fyVDG~~vr~~ 200 (360)
||...|.+..+.++.+|||..+.+.
T Consensus 82 Wh~v~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 82 WHSVSVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred EEEEEEEECCCEEEEEECCccEEee
Confidence 9999999999999999999854433
No 28
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=68.03 E-value=60 Score=25.87 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=48.7
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEEEccCCCCCCCCCCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcEEEE
Q 018153 173 TKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVL 252 (360)
Q Consensus 173 ~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~~~v 252 (360)
...||+-.|.=+...++..||+........... ...-+...-.++.||.-...... ..-....|.-.+++++|
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~-----~~~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~v 125 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSS-----SSDSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLRV 125 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSST-----THHCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEecccc-----ceecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEEE
Confidence 567999999999999999999999887764221 11133344557778765422111 11116668888888888
Q ss_pred ee
Q 018153 253 EG 254 (360)
Q Consensus 253 ~~ 254 (360)
++
T Consensus 126 ng 127 (128)
T PF02210_consen 126 NG 127 (128)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 29
>COG3248 Tsx Nucleoside-binding outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=60.68 E-value=19 Score=34.27 Aligned_cols=43 Identities=16% Similarity=-0.009 Sum_probs=34.7
Q ss_pred cCCchhHHHHHHHHHhccCCccccccCCCCC---ceeeccCCCCCC
Q 018153 10 KKSSAPFTLILILLCCCSSPSLVFTFTNAAS---SLSSSSAFNLAT 52 (360)
Q Consensus 10 ~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~---~lvwsDeFng~~ 52 (360)
+..||..||++.||+|+++++.+...++.++ .+-|..|+|.-.
T Consensus 2 srtm~ktlLA~gllaA~sa~~~~~d~~~~~~~~~~~~Whq~~n~~g 47 (284)
T COG3248 2 SRTMKKTLLAAGLLAALSASFTANDAENDKPQYLSDWWHQSVNVVG 47 (284)
T ss_pred chhHHHHHHHHHHHHhcccceeccccccCCccccchhhhhheeeee
Confidence 5689999999999999999888877776666 667888877543
No 30
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=50.28 E-value=15 Score=28.57 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=16.3
Q ss_pred cEE-EcCCCCeEEEEEeecCCCee
Q 018153 67 NLI-RSPDGKNVRLLLNRFSGSGF 89 (360)
Q Consensus 67 ~v~-~~~dG~~l~L~ld~~sgs~~ 89 (360)
++. ...+|+.+.+.+|..+|.-+
T Consensus 57 ev~~~~~dG~~~ev~vD~~tG~V~ 80 (83)
T PF13670_consen 57 EVEARDKDGKKVEVYVDPATGEVV 80 (83)
T ss_pred EEEEEECCCCEEEEEEcCCCCeEe
Confidence 345 45678888888888776543
No 31
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=45.85 E-value=2.2e+02 Score=25.92 Aligned_cols=71 Identities=25% Similarity=0.427 Sum_probs=36.8
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEEccCCCCCCCCCCCeeEEEEEecCCCcccCCCccccCCCCCCEEEEEcE
Q 018153 172 PTKQFHRYSILWTS--NNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKD 249 (360)
Q Consensus 172 ~~~dFHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~a~~~~ 249 (360)
....||.+-+-|+. ..+.+||||+...... -..|...|.... |+|.. +=..-||. .| ....|.-.+.+
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~~gG~-~vlGQ----eQd~~gG~--fd-~~q~F~G~i~~ 151 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIPGGGT-LVLGQ----EQDSYGGG--FD-ESQAFVGEISD 151 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B-SSEE-EEESS-----BSBTTBT--CS-GGGB--EEEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceECCCCE-EEECc----cccccCCC--cC-CccEeeEEEec
Confidence 35789999999964 8999999999543322 122434443333 33322 11122442 23 34567777777
Q ss_pred EEE
Q 018153 250 FVL 252 (360)
Q Consensus 250 ~~v 252 (360)
|++
T Consensus 152 ~~i 154 (195)
T PF00354_consen 152 FNI 154 (195)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
No 32
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=36.38 E-value=67 Score=24.80 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=31.9
Q ss_pred CcccCCcEEEcCCCCeEEEEEeecCCCeeEEcceeEEeEEEEEEEecCC
Q 018153 61 HLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSD 109 (360)
Q Consensus 61 ~~W~~~~v~~~~dG~~l~L~ld~~sgs~~~Sk~~f~YG~fEariKlp~g 109 (360)
+++.+++|++.-+++.|.|+..+..... ...+.+|.|+=++.||..
T Consensus 16 pG~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 16 KGFKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCCCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 4566777777666677777776543221 345678999999999985
No 33
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=35.68 E-value=1.1e+02 Score=27.82 Aligned_cols=73 Identities=10% Similarity=0.252 Sum_probs=45.1
Q ss_pred cCCCCCCCcEEEEEE--EcC---CeEEEEEcCeeEEEEEccCCCCCCCC-CCCeeEEEEEecCCCcccCCCccccCCCCC
Q 018153 168 LWFDPTKQFHRYSIL--WTS---NNIIFYVDEVPIREVVRSTAMGGDFP-SKPMSLYTTIWDASNWATSGGKAKVNYKYA 241 (360)
Q Consensus 168 l~~d~~~dFHtY~i~--Wtp---~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~ 241 (360)
+.......||.+.|. |.+ ..|..++||+++...+... -++ ....++-+.|.-.+ |....+ ..+ .
T Consensus 146 ~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~--~~~--~- 215 (224)
T PF14099_consen 146 LGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPN--ESD--T- 215 (224)
T ss_dssp CCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC----S--S-
T ss_pred CCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCc--ccc--c-
Confidence 333345789988765 775 7899999999999887632 244 47778888887543 221111 111 1
Q ss_pred CEEEEEcEEEE
Q 018153 242 PFTSEFKDFVL 252 (360)
Q Consensus 242 Pf~a~~~~~~v 252 (360)
.++|++|++
T Consensus 216 --~vy~D~v~~ 224 (224)
T PF14099_consen 216 --QVYYDNVRI 224 (224)
T ss_dssp ---EEEEEEE-
T ss_pred --EEEeccccC
Confidence 189999875
No 34
>smart00282 LamG Laminin G domain.
Probab=34.07 E-value=2.6e+02 Score=22.83 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=23.7
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEE
Q 018153 173 TKQFHRYSILWTSNNIIFYVDEVPIREV 200 (360)
Q Consensus 173 ~~dFHtY~i~Wtp~~I~fyVDG~~vr~~ 200 (360)
...||.-.|.-+...++.+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 4579999999999999999999765443
No 35
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=32.64 E-value=82 Score=25.12 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=30.5
Q ss_pred CcccCCcEEEcCCCCeEEEEEeecCCCeeEEcceeEEeEEEEEEEecCC
Q 018153 61 HLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSD 109 (360)
Q Consensus 61 ~~W~~~~v~~~~dG~~l~L~ld~~sgs~~~Sk~~f~YG~fEariKlp~g 109 (360)
++..+++|.+.-.++.|.|+..+..-..-.....+.||.|+=++.||.+
T Consensus 17 PG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 17 CGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred CCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 3555666666555556777776532111001235789999999999975
No 36
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=29.83 E-value=98 Score=24.37 Aligned_cols=48 Identities=8% Similarity=0.153 Sum_probs=32.1
Q ss_pred CcccCCcEEEcCCCCeEEEEEeecCCCe----eEEcceeEEeEEEEEEEecCC
Q 018153 61 HLFGDGNLIRSPDGKNVRLLLNRFSGSG----FVSSKLYNHGFFSAMIKLPSD 109 (360)
Q Consensus 61 ~~W~~~~v~~~~dG~~l~L~ld~~sgs~----~~Sk~~f~YG~fEariKlp~g 109 (360)
++..++++.+.-+|+.|.|+..+..... +. .+.+.+|.|+-++.||..
T Consensus 20 PG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 20 AGFSEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CCCCHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 4566777777666777777765433221 11 234668999999999985
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.67 E-value=19 Score=29.49 Aligned_cols=12 Identities=33% Similarity=0.550 Sum_probs=4.8
Q ss_pred hhHHHHHHHHHh
Q 018153 14 APFTLILILLCC 25 (360)
Q Consensus 14 ~~~~~~~~ll~~ 25 (360)
|.||++.+||++
T Consensus 4 K~~llL~l~LA~ 15 (95)
T PF07172_consen 4 KAFLLLGLLLAA 15 (95)
T ss_pred hHHHHHHHHHHH
Confidence 334444444433
No 38
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=26.09 E-value=1.9e+02 Score=27.49 Aligned_cols=76 Identities=20% Similarity=0.169 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHhccC-Ccccc-------ccCCCC-CceeeccCCCCCCc----CcCCCCcCcccCCcEEEcCCCCeEEE
Q 018153 13 SAPFTLILILLCCCSS-PSLVF-------TFTNAA-SSLSSSSAFNLATI----SFDEGYSHLFGDGNLIRSPDGKNVRL 79 (360)
Q Consensus 13 ~~~~~~~~~ll~~~~~-~a~~~-------~~~~~~-~~lvwsDeFng~~~----~f~~~~~~~W~~~~v~~~~dG~~l~L 79 (360)
++.++++|++|+.|+. .+.++ -.+..+ |.+.|...+++.-. .|+.++...+.... -.+=|..|.+
T Consensus 3 ~~~~~~~l~~la~c~~e~~~~p~~~p~~~~~~~a~~~~~~~~p~~p~~~~~~~sl~~~~~~~Lf~D~R--A~~vGDilTV 80 (230)
T COG2063 3 MLYALLALGLLAGCGTECAKVPPLSPIVPGATVAQPPQPGPAPIQPGSIFQGYSLWNYGYQPLFEDRR--ASNVGDILTI 80 (230)
T ss_pred hhHHHHHHHHHHHhhhhhccCCCccccCCCcccccCCCccccCCCCCcccccccccCcccchhhcccc--cccCCCEEEE
Confidence 4566667777777772 11111 111111 25567777666532 12233222332211 1122667888
Q ss_pred EEeecCCCeeE
Q 018153 80 LLNRFSGSGFV 90 (360)
Q Consensus 80 ~ld~~sgs~~~ 90 (360)
+|+....+-..
T Consensus 81 ~i~E~~~As~~ 91 (230)
T COG2063 81 VIQENTSASKS 91 (230)
T ss_pred EEEeccccccc
Confidence 88765544443
No 39
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=25.99 E-value=2.8e+02 Score=26.13 Aligned_cols=59 Identities=15% Similarity=0.394 Sum_probs=37.3
Q ss_pred CCcEEEEEEEcCCeEEEEEcCeeEEEEEccCCCCCCCCCCCeeEEEEEecCCCcccCCCccccCC-CCCCEEEEEcEEEE
Q 018153 174 KQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNY-KYAPFTSEFKDFVL 252 (360)
Q Consensus 174 ~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlw~Gg~Wat~GG~~~id~-~~~Pf~a~~~~~~v 252 (360)
..|+.-.|.=....|.|.|||.+|...+..... ..|- - .+|+ |-. .-+|.+|.|+++.|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~--~gPv--------------l--~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGST--YGPV--------------L--RGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SSS--SSS-------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCc--cCCc--------------c--cCcE--eeeeccchhhhhhccccC
Confidence 356667888899999999999999999754211 1120 0 1342 222 25889999999986
No 40
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=23.78 E-value=88 Score=24.41 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=22.5
Q ss_pred eEEEEEcCeeEEEEEccCCCCCCCC-CCCeeEEEEEec
Q 018153 187 NIIFYVDEVPIREVVRSTAMGGDFP-SKPMSLYTTIWD 223 (360)
Q Consensus 187 ~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlw~ 223 (360)
.+.|||||+++.+..... ...|+ ..|..-.|.+-+
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEEEc
Confidence 889999999996554322 12344 466666666643
No 41
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=22.23 E-value=3.4e+02 Score=22.52 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCCceEEE-cCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEEc
Q 018153 160 RGREERYQ-LWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVR 202 (360)
Q Consensus 160 ~~~~~~~~-l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~ 202 (360)
.+.|++.. .+|.+.+ ..+-.|.=+++....+|||+++..+..
T Consensus 63 Wg~Eer~~~~pf~~g~-~F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 63 WGPEERSGGFPFQPGQ-PFELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred ecHhhccCCCCCCCCC-eEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 45666553 5555444 448888899999999999999888763
No 42
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=22.02 E-value=71 Score=28.01 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=4.0
Q ss_pred CCeeEEEEEe
Q 018153 213 KPMSLYTTIW 222 (360)
Q Consensus 213 ~Pm~l~lnlw 222 (360)
.-++.+-=.|
T Consensus 118 ~~~h~y~~~W 127 (185)
T PF00722_consen 118 TDFHTYGFEW 127 (185)
T ss_dssp TSEEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 3344443334
No 43
>COG3198 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.96 E-value=69 Score=28.52 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhccCCccccccCCCCCceeecc
Q 018153 14 APFTLILILLCCCSSPSLVFTFTNAASSLSSSS 46 (360)
Q Consensus 14 ~~~~~~~~ll~~~~~~a~~~~~~~~~~~lvwsD 46 (360)
.-|++++.+.+..++.+++..+...+-+||..|
T Consensus 11 pWfl~alp~tvVi~~v~~v~va~~n~~~LVTdd 43 (172)
T COG3198 11 PWFLMALPITVVIASVAMVFVAQQNATDLVTDD 43 (172)
T ss_pred HHHHHHHHHHHHHHhhheeeeeeccccceeehh
Confidence 446777777777777776666666655565544
No 44
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=21.35 E-value=1.4e+02 Score=24.74 Aligned_cols=29 Identities=10% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEE
Q 018153 172 PTKQFHRYSILWTSNNIIFYVDEVPIREVV 201 (360)
Q Consensus 172 ~~~dFHtY~i~Wtp~~I~fyVDG~~vr~~~ 201 (360)
+.++-|++.+. ..+.++++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 46788999888 888999999999996654
No 45
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.02 E-value=67 Score=28.33 Aligned_cols=22 Identities=9% Similarity=0.303 Sum_probs=19.0
Q ss_pred cccCCCCCHHHHHHHHHHhhcC
Q 018153 277 EKGLSVITPAGRRAMRRFRERY 298 (360)
Q Consensus 277 ~~~~~~l~~~~~~~~~~v~~~~ 298 (360)
+..|..||++|+++++.++++|
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~~f 59 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHNDF 59 (143)
T ss_pred ccccccCCHHHHHHHHHHHHHH
Confidence 4567899999999999998887
No 46
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=20.71 E-value=6.7e+02 Score=23.08 Aligned_cols=136 Identities=13% Similarity=0.280 Sum_probs=66.3
Q ss_pred eEEeEEEEEEEecCCCCCceEEEEEeecCCCCCC-------CCCeeEEEEcCCCCCCCcEEEeeeecCCCCCCCCceEEE
Q 018153 95 YNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPK-------THDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQ 167 (360)
Q Consensus 95 f~YG~fEariKlp~g~s~G~~pAFwl~~~~~~~~-------~~~EIDiE~lG~~~g~p~~~qtNv~~~G~~~~~~~~~~~ 167 (360)
..-|.+-++.|.... .+ +-|.+-.+++.... ..++|=+|+.+......+...+.+...+.
T Consensus 32 L~~gTI~i~Fk~~~~--~~-~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~---------- 98 (190)
T PF02973_consen 32 LEEGTIVIRFKSDSN--SG-IQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG---------- 98 (190)
T ss_dssp -SSEEEEEEEEESS---SS-EEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE----------
T ss_pred ccccEEEEEEecCCC--cc-eeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc----------
Confidence 345677777776443 43 34455555432110 12267677777654332222222111000
Q ss_pred cCCCCCCCcEEEEEEEc--CCeEEEEEcCeeEEEEEccCCCCCCCC-CCCeeEEEEEecCCCcccCCCccccCCCCCCEE
Q 018153 168 LWFDPTKQFHRYSILWT--SNNIIFYVDEVPIREVVRSTAMGGDFP-SKPMSLYTTIWDASNWATSGGKAKVNYKYAPFT 244 (360)
Q Consensus 168 l~~d~~~dFHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlw~Gg~Wat~GG~~~id~~~~Pf~ 244 (360)
.-....||+-++.=+ ..+.++||||..+.++.... ..|- +-|- +=++-.|+. .++| -..-||.
T Consensus 99 --~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~--~n~~~iG~t--~R~g-----~~~y~f~ 164 (190)
T PF02973_consen 99 --YKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPG--LNSVQIGGT--NRAG-----SNAYPFN 164 (190)
T ss_dssp --ETTEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT----EEEESSE--EETT-----EEES--E
T ss_pred --ccCCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcC--CceEEEcce--EeCC-----Cceeccc
Confidence 012356888888776 68999999998888775432 2232 1110 001112322 1122 2367999
Q ss_pred EEEcEEEEeeccC
Q 018153 245 SEFKDFVLEGCPV 257 (360)
Q Consensus 245 a~~~~~~v~~c~~ 257 (360)
-.|++++|+.++-
T Consensus 165 G~I~~l~iYn~aL 177 (190)
T PF02973_consen 165 GTIDNLKIYNRAL 177 (190)
T ss_dssp EEEEEEEEESS--
T ss_pred ceEEEEEEEcCcC
Confidence 9999999987764
No 47
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.14 E-value=3.3e+02 Score=23.34 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=32.7
Q ss_pred CcccCCcEEEcCCCCeEEEEEeecCCC----eeEEcceeEEeEEEEEEEecCC
Q 018153 61 HLFGDGNLIRSPDGKNVRLLLNRFSGS----GFVSSKLYNHGFFSAMIKLPSD 109 (360)
Q Consensus 61 ~~W~~~~v~~~~dG~~l~L~ld~~sgs----~~~Sk~~f~YG~fEariKlp~g 109 (360)
+++..++|.+.-+++.|.|+..+.... .-.-.+...||.|+-++.||..
T Consensus 59 PG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~ 111 (146)
T COG0071 59 PGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEK 111 (146)
T ss_pred CCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccc
Confidence 466677777766666777777654411 1122234569999999999986
Done!