BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018154
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 113 bits (282), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
L KGPWT EEDQK+I+ ++K+G W + K+ R GK CR RW N+L P++K+ +
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ I + H +LGN+W+ IA LPGRTDN +KN+WN+ I++++
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
L KGPWT EEDQ++I+++QK+G W + K+ R GK CR RW N+L P++K+ +
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ I Q H LGN+W+ IA LPGRTDN +KN+WN+ +R+++
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 110 bits (274), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
L KGPWT EEDQ++I +QK+G W + K+ R GK CR RW N+L P++K+ +
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ I Q H LGN+W+ IA LPGRTDN IKN+WN+ +R+++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 109 bits (273), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
L KGPWT EEDQ++I +QK+G W + K+ R GK CR RW N+L P++K+ +
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ I Q H LGN+W+ IA LPGRTDN IKN+WN+ +R+++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFA 71
L KGPWT EEDQ++I +QK+G W + K+ R GK CR RW N+L P++K+ +
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ I Q H LGN+W+ IA LPGRTDN IKN+WN+ +R+++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGL--QRCGKSCRLRWTNYLRPDIKRGRFA 71
KGP+T ED + +Y++++G NW P+ R K CR RW N+L P + + +
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
EE+ETI + + LG+KWS IA +PGRTDN IKN WN+ I KR+
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 10 SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGR 69
KK +TPEED+ L + +HG +W+ + R + CR RW NYL P I
Sbjct: 7 KAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTP 64
Query: 70 FAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNT 110
+ EE+ ++Q G +W+ IA PGRTD IKN W T
Sbjct: 65 WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 66 KRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHI 112
K+ +F EE+E + + + G+ W IAA P R + ++ W ++
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 65 IKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
+K+ + EE+ I Q H LGN+W+ IA LPGRTDN IKN+WN+ +R+++
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 64 DIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116
++K+ + EE+ + Q H LGN+W+ IA LPGRTDN IKN+WN+ +R+++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFE 73
K +T EED KL + ++G +W + + + R + CR RW NY+ P ++ ++ E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKR 115
E+ + Q ++ G KW+ I+ L R+DN I+N W R R
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
L KGPWT EEDQ+LI +QK+G W + K+ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 31.6 bits (70), Expect = 0.75, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 67 RGRFAFEEEETIIQLHSILGNK-WSAIAARLPGRTDNEIKNYWNTHI 112
+G + EE++ +I+L G K WS IA L GR + + W+ H+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
L KGPWT EEDQ++I+ +QK+G W + K+ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 32.0 bits (71), Expect = 0.49, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 67 RGRFAFEEEETIIQLHSILGNK-WSAIAARLPGRTDNEIKNYWNTHI 112
+G + EE++ +I+L G K WS IA L GR + + W+ H+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
L KGPWT EEDQ++I +QK+G W + K+ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 67 RGRFAFEEEETIIQLHSILGNK-WSAIAARLPGRTDNEIKNYWNTHI 112
+G + EE++ +I+L G K WS IA L GR + + W+ H+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 34.3 bits (77), Expect = 0.098, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
L K WT EED+KL ++++G +W+ + N R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 34.3 bits (77), Expect = 0.098, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64
L K WT EED+KL ++++G +W+ + N R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 17 WTPEEDQKLIDYIQKHGYGNW 37
WT EED+KL+ + K+GYG+W
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSW 191
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 17 WTPEEDQKLIDYIQKHGYGNW 37
WT EED+KL+ + K+GYG+W
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSW 192
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG-LQRCGKSCRLRWTNYLR 62
KK WT EE + + +QK+G GNW + KN + R + RW R
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 51
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 32.3 bits (72), Expect = 0.48, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG-LQRCGKSCRLRWTNYLR 62
KK WT EE + + +QK+G GNW + KN + R + RW R
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG-LQRCGKSCRLRWTNYLR 62
KK WT EE + + +QK+G GNW + KN + R + RW R
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 32.0 bits (71), Expect = 0.56, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG-LQRCGKSCRLRWTNYLR 62
KK WT EE + + +QK+G GNW + KN + R + RW R
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 63
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG-LQRCGKSCRLRWTNYLR 62
KK WT EE + + +QK+G GNW + KN + R + RW R
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 59
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 31.6 bits (70), Expect = 0.79, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 17 WTPEEDQKLIDYIQKHGYGNWRTLPKNAGL--QRCGKSCRLRWTNYLRPDIKRGRFA 71
W ED+ L + K+G W + A L ++ K C+ RW +L P IK+ ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1P4W|A Chain A, Solution Structure Of The Dna-Binding Domain Of The
Erwinia Amylovora Rcsb Protein
Length = 99
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQR 48
G +TPE KL++ I GYG+ R PK + + R
Sbjct: 11 GSYTPESVAKLLEKISAGGYGDKRLSPKESEVLR 44
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 17 WTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCR 54
W +E+ LID + G GNW + G R + CR
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR 49
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 26 IDYIQKHGYGNWRTLPKNAGLQRCGK--SCRLRWTNYLR---PDIKRGRFAFEEEETIIQ 80
I+YIQ++G R+ P A QRC + S +NY + PD+K+ R A + T I
Sbjct: 81 IEYIQQNGVVEERSYPYVAREQRCRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIA 140
Query: 81 LHSILGNKWSAIAARLPGRT 100
+ I+G K GRT
Sbjct: 141 V--IIGIKDLRAFQHYDGRT 158
>pdb|4B4C|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Chd1
Length = 211
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 5 PCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTL 40
PC K+ W E+D L+ I ++GYG+W +
Sbjct: 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMI 160
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
K WT EED++L +++ G +W+ L + R + C+ RW L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVL 54
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 27.7 bits (60), Expect = 9.7, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTL 40
K+ W EED+ L ++K+G GNW +
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,205,637
Number of Sequences: 62578
Number of extensions: 378602
Number of successful extensions: 1104
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 54
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)