Query 018154
Match_columns 360
No_of_seqs 201 out of 1488
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 7.4E-33 2.5E-37 228.1 8.4 105 11-116 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 4E-32 1.4E-36 232.7 9.6 107 14-121 2-108 (131)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 3.1E-32 1.1E-36 232.1 7.4 113 3-116 16-128 (128)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.6E-32 8.8E-37 226.5 6.6 104 14-118 1-104 (107)
5 3osg_A MYB21; transcription-DN 100.0 8.8E-32 3E-36 229.4 8.1 106 8-115 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 8.3E-32 2.8E-36 237.1 3.1 130 11-144 3-133 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 5.5E-30 1.9E-34 225.4 6.0 109 7-116 51-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 2.4E-23 8.3E-28 177.2 2.3 101 40-144 1-102 (128)
9 2dim_A Cell division cycle 5-l 99.8 3.6E-21 1.2E-25 148.4 1.6 67 8-75 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 6.3E-18 2.1E-22 158.4 5.0 106 9-115 3-200 (246)
11 2juh_A Telomere binding protei 99.7 1.2E-17 4E-22 142.5 2.0 83 8-91 11-103 (121)
12 2llk_A Cyclin-D-binding MYB-li 99.7 3.9E-17 1.3E-21 128.0 4.4 58 54-112 10-67 (73)
13 2cu7_A KIAA1915 protein; nucle 99.6 1.2E-16 4.3E-21 123.8 6.4 65 61-126 3-67 (72)
14 2din_A Cell division cycle 5-l 99.6 1.4E-16 4.9E-21 121.3 6.4 60 60-120 2-61 (66)
15 2dim_A Cell division cycle 5-l 99.6 1.3E-16 4.5E-21 122.8 5.2 63 62-124 4-67 (70)
16 2d9a_A B-MYB, MYB-related prot 99.6 5.3E-17 1.8E-21 121.4 2.5 57 9-66 3-59 (60)
17 2roh_A RTBP1, telomere binding 99.6 1.1E-16 3.8E-21 136.7 3.7 79 9-88 26-114 (122)
18 1gvd_A MYB proto-oncogene prot 99.6 1E-16 3.4E-21 116.6 2.5 52 12-64 1-52 (52)
19 2d9a_A B-MYB, MYB-related prot 99.6 4E-16 1.4E-20 116.6 4.4 55 62-116 3-58 (60)
20 1guu_A C-MYB, MYB proto-oncoge 99.6 1.5E-16 5.3E-21 115.5 1.2 52 12-64 1-52 (52)
21 1ity_A TRF1; helix-turn-helix, 99.6 1.9E-16 6.4E-21 121.7 1.8 64 8-71 4-68 (69)
22 1ity_A TRF1; helix-turn-helix, 99.6 1.8E-15 6.1E-20 116.2 6.2 62 60-121 3-67 (69)
23 1guu_A C-MYB, MYB proto-oncoge 99.6 1.4E-15 4.7E-20 110.5 5.2 50 65-114 1-51 (52)
24 1gvd_A MYB proto-oncogene prot 99.6 2.3E-15 7.7E-20 109.5 5.3 50 65-114 1-51 (52)
25 3osg_A MYB21; transcription-DN 99.5 1.8E-15 6E-20 128.7 3.8 79 62-143 6-84 (126)
26 1gv2_A C-MYB, MYB proto-oncoge 99.5 2E-15 6.9E-20 123.9 3.3 77 64-143 1-78 (105)
27 3sjm_A Telomeric repeat-bindin 99.5 9.8E-16 3.4E-20 116.9 0.9 56 11-66 8-64 (64)
28 1w0t_A Telomeric repeat bindin 99.5 8E-15 2.7E-19 107.1 5.2 49 66-114 1-52 (53)
29 1x41_A Transcriptional adaptor 99.5 9.4E-15 3.2E-19 109.6 5.3 53 62-114 3-56 (60)
30 1x41_A Transcriptional adaptor 99.5 2.3E-15 7.8E-20 112.9 1.6 56 9-65 3-58 (60)
31 2k9n_A MYB24; R2R3 domain, DNA 99.5 5.8E-15 2E-19 122.1 3.2 75 67-144 1-76 (107)
32 2yum_A ZZZ3 protein, zinc fing 99.5 1.3E-14 4.6E-19 112.8 5.1 57 62-118 3-65 (75)
33 3zqc_A MYB3; transcription-DNA 99.5 1.4E-14 4.7E-19 123.8 4.4 75 67-144 2-77 (131)
34 2din_A Cell division cycle 5-l 99.5 1.7E-15 5.8E-20 115.3 -1.4 59 7-68 2-60 (66)
35 3sjm_A Telomeric repeat-bindin 99.5 2.6E-14 9E-19 109.0 5.2 52 65-116 9-63 (64)
36 1w0t_A Telomeric repeat bindin 99.5 6.1E-15 2.1E-19 107.8 0.9 50 13-62 1-51 (53)
37 2elk_A SPCC24B10.08C protein; 99.5 4.9E-14 1.7E-18 105.1 5.4 50 63-112 5-56 (58)
38 2yum_A ZZZ3 protein, zinc fing 99.4 5.8E-15 2E-19 114.9 -0.3 61 8-69 2-67 (75)
39 2elk_A SPCC24B10.08C protein; 99.4 2.1E-14 7.1E-19 107.2 1.1 51 11-61 6-56 (58)
40 2ltp_A Nuclear receptor corepr 99.1 2E-14 7E-19 116.0 0.0 56 60-115 9-64 (89)
41 2cu7_A KIAA1915 protein; nucle 99.4 2.2E-14 7.4E-19 111.2 -0.2 58 8-67 3-60 (72)
42 2aje_A Telomere repeat-binding 99.4 2.6E-13 8.8E-18 113.1 3.7 80 7-86 6-94 (105)
43 2llk_A Cyclin-D-binding MYB-li 99.3 2.2E-13 7.6E-18 106.6 1.7 61 2-66 11-71 (73)
44 2ckx_A NGTRF1, telomere bindin 99.3 3.7E-13 1.3E-17 107.8 2.9 69 15-84 1-79 (83)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.2E-12 4.1E-17 102.5 5.4 52 62-113 13-68 (73)
46 2juh_A Telomere binding protei 99.3 5.3E-13 1.8E-17 113.8 1.7 83 61-145 11-103 (121)
47 2yus_A SWI/SNF-related matrix- 99.3 1.8E-12 6E-17 102.8 3.8 48 64-111 15-62 (79)
48 2yus_A SWI/SNF-related matrix- 99.2 2.1E-12 7.1E-17 102.4 3.0 52 7-60 11-62 (79)
49 2ltp_A Nuclear receptor corepr 98.9 9.4E-13 3.2E-17 106.2 0.0 56 6-63 8-63 (89)
50 2ckx_A NGTRF1, telomere bindin 99.2 1.9E-11 6.5E-16 97.8 5.6 48 68-115 1-53 (83)
51 1ign_A Protein (RAP1); RAP1,ye 99.2 1E-11 3.4E-16 116.5 4.6 78 63-147 4-87 (246)
52 2aje_A Telomere repeat-binding 99.2 3.4E-11 1.2E-15 100.3 6.9 53 63-115 9-66 (105)
53 2cqr_A RSGI RUH-043, DNAJ homo 99.2 4.2E-12 1.4E-16 99.4 0.6 56 6-62 10-68 (73)
54 2cjj_A Radialis; plant develop 99.2 3.1E-11 1E-15 98.6 5.6 58 66-123 7-69 (93)
55 1x58_A Hypothetical protein 49 99.2 3.8E-11 1.3E-15 91.2 5.7 49 66-114 7-58 (62)
56 2roh_A RTBP1, telomere binding 99.1 4.1E-11 1.4E-15 102.3 5.4 52 63-114 27-83 (122)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 2.8E-09 9.4E-14 80.1 5.6 48 66-113 11-58 (61)
58 2cqq_A RSGI RUH-037, DNAJ homo 98.8 2.6E-09 8.9E-14 83.2 4.8 59 64-123 5-67 (72)
59 2cjj_A Radialis; plant develop 98.8 4E-10 1.4E-14 92.0 -0.4 48 13-61 7-57 (93)
60 3hm5_A DNA methyltransferase 1 98.8 4.4E-09 1.5E-13 85.9 5.1 67 50-120 17-88 (93)
61 1x58_A Hypothetical protein 49 98.7 3.9E-09 1.3E-13 80.1 1.2 50 12-63 6-58 (62)
62 2eqr_A N-COR1, N-COR, nuclear 98.6 8.3E-09 2.8E-13 77.5 1.9 53 7-61 5-57 (61)
63 2iw5_B Protein corest, REST co 98.6 4.9E-08 1.7E-12 91.0 5.7 49 66-114 132-180 (235)
64 2xag_B REST corepressor 1; ami 98.4 9.9E-08 3.4E-12 97.5 4.3 45 68-112 381-425 (482)
65 1wgx_A KIAA1903 protein; MYB D 98.4 1.7E-07 5.9E-12 73.3 4.0 47 67-113 8-58 (73)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.3 4.9E-08 1.7E-12 76.0 -0.6 51 10-62 4-57 (72)
67 1fex_A TRF2-interacting telome 98.2 9.6E-07 3.3E-11 66.2 4.3 47 67-113 2-58 (59)
68 1fex_A TRF2-interacting telome 98.2 2.5E-07 8.5E-12 69.4 0.1 48 14-62 2-58 (59)
69 2iw5_B Protein corest, REST co 98.1 5.6E-07 1.9E-11 83.9 1.5 52 9-62 128-179 (235)
70 1wgx_A KIAA1903 protein; MYB D 98.1 6.2E-07 2.1E-11 70.1 0.6 49 14-63 8-59 (73)
71 2yqk_A Arginine-glutamic acid 98.0 9.3E-06 3.2E-10 61.3 5.3 50 62-111 4-54 (63)
72 1ofc_X ISWI protein; nuclear p 97.9 1.4E-05 4.7E-10 77.6 7.0 100 15-115 111-276 (304)
73 4eef_G F-HB80.4, designed hema 97.9 3.2E-06 1.1E-10 66.2 1.7 43 67-109 20-66 (74)
74 1ug2_A 2610100B20RIK gene prod 97.7 2.7E-05 9.2E-10 63.2 4.6 46 69-114 35-83 (95)
75 4iej_A DNA methyltransferase 1 97.6 9.8E-05 3.4E-09 60.2 6.4 60 56-119 23-87 (93)
76 4eef_G F-HB80.4, designed hema 97.6 9.7E-06 3.3E-10 63.4 0.3 44 14-58 20-66 (74)
77 2yqk_A Arginine-glutamic acid 97.6 2.5E-05 8.5E-10 58.9 2.2 50 8-59 3-53 (63)
78 2lr8_A CAsp8-associated protei 96.7 9.9E-06 3.4E-10 62.5 0.0 44 69-113 16-62 (70)
79 2crg_A Metastasis associated p 97.3 0.00028 9.6E-09 54.2 5.4 45 67-111 8-53 (70)
80 4a69_C Nuclear receptor corepr 97.3 0.00023 7.9E-09 57.7 4.9 45 67-111 43-87 (94)
81 2xag_B REST corepressor 1; ami 97.1 0.00011 3.7E-09 75.2 1.6 50 10-61 376-425 (482)
82 4b4c_A Chromodomain-helicase-D 97.1 0.0011 3.8E-08 59.7 7.3 46 68-113 135-195 (211)
83 3hm5_A DNA methyltransferase 1 96.9 0.00013 4.3E-09 59.5 -0.1 49 13-62 29-81 (93)
84 2ebi_A DNA binding protein GT- 96.9 0.00065 2.2E-08 53.5 3.6 48 67-114 4-65 (86)
85 2crg_A Metastasis associated p 96.7 0.00045 1.5E-08 53.1 1.4 45 13-59 7-52 (70)
86 4a69_C Nuclear receptor corepr 96.7 0.00044 1.5E-08 56.1 1.3 44 14-59 43-86 (94)
87 2ebi_A DNA binding protein GT- 96.5 0.00012 3.9E-09 57.9 -3.3 49 13-61 3-63 (86)
88 2y9y_A Imitation switch protei 96.2 0.0088 3E-07 59.4 7.4 103 15-117 124-294 (374)
89 1ug2_A 2610100B20RIK gene prod 95.8 0.0019 6.5E-08 52.5 0.4 45 15-60 34-80 (95)
90 2lr8_A CAsp8-associated protei 94.6 0.002 6.7E-08 49.8 0.0 48 13-62 13-62 (70)
91 4b4c_A Chromodomain-helicase-D 94.8 0.022 7.4E-07 51.2 4.3 40 4-43 124-163 (211)
92 4iej_A DNA methyltransferase 1 92.3 0.032 1.1E-06 45.3 0.6 49 12-61 28-80 (93)
93 1irz_A ARR10-B; helix-turn-hel 92.2 0.23 7.8E-06 37.7 5.2 48 65-112 5-57 (64)
94 1ofc_X ISWI protein; nuclear p 92.1 0.21 7E-06 48.4 6.1 46 68-113 111-157 (304)
95 2xb0_X Chromo domain-containin 89.9 0.24 8.2E-06 47.1 4.2 28 15-42 169-196 (270)
96 2xb0_X Chromo domain-containin 86.2 0.4 1.4E-05 45.6 3.1 27 68-94 169-196 (270)
97 1irz_A ARR10-B; helix-turn-hel 77.1 0.71 2.4E-05 34.9 0.9 47 11-58 4-54 (64)
98 3cz6_A DNA-binding protein RAP 54.2 9.4 0.00032 33.9 3.5 22 12-33 112-141 (168)
99 2o8x_A Probable RNA polymerase 53.2 11 0.00038 26.5 3.3 41 73-114 18-58 (70)
100 1u78_A TC3 transposase, transp 51.2 31 0.0011 27.3 6.1 86 15-107 5-99 (141)
101 1ku3_A Sigma factor SIGA; heli 48.3 15 0.00051 26.7 3.3 41 73-114 13-57 (73)
102 2li6_A SWI/SNF chromatin-remod 47.3 9.8 0.00033 31.2 2.4 38 77-114 53-98 (116)
103 2lm1_A Lysine-specific demethy 46.4 21 0.00073 28.4 4.2 39 76-114 47-97 (107)
104 2jrz_A Histone demethylase jar 44.7 20 0.00068 29.4 3.9 39 76-114 43-93 (117)
105 2y9y_A Imitation switch protei 43.3 31 0.0011 34.2 5.7 45 68-112 124-170 (374)
106 2cxy_A BAF250B subunit, HBAF25 41.3 26 0.00088 29.0 4.1 39 76-114 54-104 (125)
107 2p7v_B Sigma-70, RNA polymeras 41.0 17 0.00057 26.0 2.6 41 73-114 8-52 (68)
108 2k27_A Paired box protein PAX- 40.1 78 0.0027 26.0 7.0 67 14-85 23-99 (159)
109 2eqy_A RBP2 like, jumonji, at 39.7 27 0.00093 28.8 4.0 39 76-114 45-95 (122)
110 2rq5_A Protein jumonji; develo 36.7 7.1 0.00024 32.6 -0.1 56 25-83 47-113 (121)
111 3hug_A RNA polymerase sigma fa 34.7 30 0.001 26.1 3.3 40 73-113 40-79 (92)
112 2q1z_A RPOE, ECF SIGE; ECF sig 32.7 52 0.0018 27.1 4.7 31 83-114 148-178 (184)
113 2jxj_A Histone demethylase jar 31.3 19 0.00066 28.1 1.7 38 77-114 40-89 (96)
114 1c20_A DEAD ringer protein; DN 31.3 46 0.0016 27.5 4.1 41 74-114 53-106 (128)
115 1kkx_A Transcription regulator 30.9 24 0.00083 29.3 2.3 39 77-115 52-98 (123)
116 2kk0_A AT-rich interactive dom 29.5 44 0.0015 28.4 3.7 39 76-114 67-118 (145)
117 3i4p_A Transcriptional regulat 29.1 26 0.00089 29.5 2.2 45 73-118 3-48 (162)
118 2li6_A SWI/SNF chromatin-remod 28.5 6.9 0.00023 32.1 -1.5 39 24-63 53-98 (116)
119 1x3u_A Transcriptional regulat 27.8 60 0.0021 23.2 3.8 41 70-113 17-57 (79)
120 3cz6_A DNA-binding protein RAP 27.0 46 0.0016 29.5 3.4 26 54-79 100-126 (168)
121 2yqf_A Ankyrin-1; death domain 26.6 58 0.002 26.0 3.8 34 71-105 14-47 (111)
122 1or7_A Sigma-24, RNA polymeras 26.5 58 0.002 26.9 4.0 30 84-114 154-183 (194)
123 1k78_A Paired box protein PAX5 26.0 85 0.0029 25.3 4.8 67 14-85 30-106 (149)
124 1ig6_A MRF-2, modulator recogn 26.0 27 0.00093 27.9 1.7 40 75-114 35-87 (107)
125 2rq5_A Protein jumonji; develo 25.2 55 0.0019 27.2 3.5 78 12-115 5-97 (121)
126 1tty_A Sigma-A, RNA polymerase 25.0 58 0.002 24.4 3.3 40 73-113 21-64 (87)
127 1fse_A GERE; helix-turn-helix 24.6 60 0.0021 22.8 3.2 43 68-113 10-52 (74)
128 3c57_A Two component transcrip 24.6 69 0.0024 24.5 3.8 43 69-114 27-69 (95)
129 2jpc_A SSRB; DNA binding prote 24.4 92 0.0032 21.1 4.1 38 75-114 3-40 (61)
130 3ulq_B Transcriptional regulat 24.4 87 0.003 23.9 4.3 45 67-114 27-71 (90)
131 1je8_A Nitrate/nitrite respons 22.1 74 0.0025 23.6 3.4 43 69-114 21-63 (82)
132 1ntc_A Protein (nitrogen regul 21.4 1.1E+02 0.0038 23.3 4.4 35 72-107 50-84 (91)
133 2dbb_A Putative HTH-type trans 21.3 1E+02 0.0034 25.1 4.4 44 73-117 9-53 (151)
134 3e7l_A Transcriptional regulat 21.1 85 0.0029 22.2 3.4 43 72-123 18-60 (63)
135 2o71_A Death domain-containing 20.9 66 0.0023 26.3 3.1 28 77-105 26-53 (115)
136 1xsv_A Hypothetical UPF0122 pr 20.8 92 0.0031 24.8 3.9 40 73-113 28-67 (113)
137 2rnj_A Response regulator prot 20.6 84 0.0029 23.6 3.5 42 69-113 29-70 (91)
138 2of5_A Death domain-containing 20.2 63 0.0022 26.4 2.8 28 77-105 26-53 (114)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=7.4e-33 Score=228.11 Aligned_cols=105 Identities=49% Similarity=0.909 Sum_probs=99.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCcch
Q 018154 11 GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWS 90 (360)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs 90 (360)
++++|+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||.|||++|+++|.+||.+|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHhhHHH
Q 018154 91 AIAARLPGRTDNEIKNYWNTHIRKRL 116 (360)
Q Consensus 91 ~IA~~LpGRT~~qcKnRW~~lLkk~l 116 (360)
.||..|||||+.+||+||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998753
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=4e-32 Score=232.75 Aligned_cols=107 Identities=42% Similarity=0.729 Sum_probs=103.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCcchhhc
Q 018154 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIA 93 (360)
Q Consensus 14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA 93 (360)
||+||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++|+||.|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhHHHhhCCC
Q 018154 94 ARLPGRTDNEIKNYWNTHIRKRLLRMGI 121 (360)
Q Consensus 94 ~~LpGRT~~qcKnRW~~lLkk~l~k~g~ 121 (360)
..|||||+.+||+||+.+|++++....+
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~ 108 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSN 108 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999998876543
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=3.1e-32 Score=232.15 Aligned_cols=113 Identities=45% Similarity=0.837 Sum_probs=102.9
Q ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHH
Q 018154 3 RAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLH 82 (360)
Q Consensus 3 R~p~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv 82 (360)
|+--..+|++++|+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|
T Consensus 16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 94 (128)
T 1h8a_C 16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 94 (128)
T ss_dssp ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 4444567999999999999999999999999889999999998 999999999999999999999999999999999999
Q ss_pred HHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHH
Q 018154 83 SILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116 (360)
Q Consensus 83 ~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l 116 (360)
.+||++|+.||..|||||+.+||+||+.++++++
T Consensus 95 ~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 95 KRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999987653
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=2.6e-32 Score=226.50 Aligned_cols=104 Identities=32% Similarity=0.556 Sum_probs=100.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCcchhhc
Q 018154 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIA 93 (360)
Q Consensus 14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA 93 (360)
||+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||.|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhHHHhh
Q 018154 94 ARLPGRTDNEIKNYWNTHIRKRLLR 118 (360)
Q Consensus 94 ~~LpGRT~~qcKnRW~~lLkk~l~k 118 (360)
..|||||+.+||+||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999876544
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=8.8e-32 Score=229.43 Aligned_cols=106 Identities=37% Similarity=0.664 Sum_probs=101.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCC
Q 018154 8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGN 87 (360)
Q Consensus 8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~ 87 (360)
.+.+.++|+||+|||++|+++|.+||. +|..||+.|+ +|+++|||+||.++|+|.+++++||.|||++|+++|.+||.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 367889999999999999999999995 9999999998 99999999999999999999999999999999999999999
Q ss_pred cchhhcccCCCCCHHHHHHHHHHHhhHH
Q 018154 88 KWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (360)
Q Consensus 88 kWs~IA~~LpGRT~~qcKnRW~~lLkk~ 115 (360)
+|+.||..|||||+.+||+||..++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988654
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=8.3e-32 Score=237.05 Aligned_cols=130 Identities=26% Similarity=0.573 Sum_probs=83.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCC-cc
Q 018154 11 GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGN-KW 89 (360)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~-kW 89 (360)
++++++||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 36899999999999999999999889999999998 99999999999999999999999999999999999999995 79
Q ss_pred hhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCCCCC
Q 018154 90 SAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFY 144 (360)
Q Consensus 90 s~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~Ss~~ 144 (360)
..||..|||||+.+|++||.++|++.+.+ .+|+..++..|+.+...+|..|.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~---~~WT~eEd~~L~~~~~~~g~~W~ 133 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKK---TSWTEEEDRIIYQAHKRLGNRWA 133 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCC---SCCCHHHHHHHHHHHHHHCSCHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccc---cCCChHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999988766 67888888888888888887763
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=5.5e-30 Score=225.43 Aligned_cols=109 Identities=47% Similarity=0.867 Sum_probs=103.6
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhC
Q 018154 7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILG 86 (360)
Q Consensus 7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G 86 (360)
..+|++++|+||+|||++|+++|.+||..+|..||+.|+ +|++++|+.||.++|+|.+++++||+|||.+|++++.+||
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 457899999999999999999999999878999999998 9999999999999999999999999999999999999999
Q ss_pred CcchhhcccCCCCCHHHHHHHHHHHhhHHH
Q 018154 87 NKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116 (360)
Q Consensus 87 ~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l 116 (360)
++|+.||+.|||||+.+||+||+.++++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999987653
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.86 E-value=2.4e-23 Score=177.17 Aligned_cols=101 Identities=22% Similarity=0.493 Sum_probs=73.2
Q ss_pred cccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHHhhHHHhh
Q 018154 40 LPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRKRLLR 118 (360)
Q Consensus 40 IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k 118 (360)
||+.|+ +|+++||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.+|++||.++|.+.+.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999995 7999999999999999999999999998876
Q ss_pred CCCCCCCcCcccchhhhccccCCCCC
Q 018154 119 MGIDPVTHSPRLDLLDLSSILSSSFY 144 (360)
Q Consensus 119 ~g~~p~t~~~~~~Ll~~ssil~Ss~~ 144 (360)
.+|+.+++..|+.+...+|..|.
T Consensus 80 ---~~WT~eEd~~L~~~~~~~G~~W~ 102 (128)
T 1h8a_C 80 ---TSWTEEEDRIIYQAHKRLGNRWA 102 (128)
T ss_dssp ---SCCCHHHHHHHHHHHHHHCSCHH
T ss_pred ---ccCCHHHHHHHHHHHHHHCcCHH
Confidence 67888888888888888887663
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.6e-21 Score=148.40 Aligned_cols=67 Identities=27% Similarity=0.541 Sum_probs=64.5
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHH
Q 018154 8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEE 75 (360)
Q Consensus 8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EED 75 (360)
..+++++|+||+|||++|+++|.+||..+|..||+.|+ +|+++|||+||.++|+|.+++++||.|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 35789999999999999999999999889999999999 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.70 E-value=6.3e-18 Score=158.35 Aligned_cols=106 Identities=18% Similarity=0.319 Sum_probs=91.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCC-----ceecccccCCCCcccccccccccccCCCCc-----------------
Q 018154 9 KSGLKKGPWTPEEDQKLIDYIQKHGYGN-----WRTLPKNAGLQRCGKSCRLRWTNYLRPDIK----------------- 66 (360)
Q Consensus 9 K~~lkKg~WT~EEDe~L~~lV~k~G~~n-----W~~IAk~l~~~Rt~kqCR~RW~n~L~p~lk----------------- 66 (360)
.+.+++++||+|||++|+++|.++|..+ |..||+.|+ ||++.+||.||+.+|++.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4578899999999999999999998532 999999998 99999999999999999986
Q ss_pred ------------cCCCChHHHHHHHHHHHH-h--------------------------------C---------------
Q 018154 67 ------------RGRFAFEEEETIIQLHSI-L--------------------------------G--------------- 86 (360)
Q Consensus 67 ------------kg~WT~EEDe~Llelv~~-~--------------------------------G--------------- 86 (360)
+..||.|||..|...+.+ | |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999999877 2 1
Q ss_pred ----------CcchhhcccCCCCCHHHHHHHHHHHhhHH
Q 018154 87 ----------NKWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (360)
Q Consensus 87 ----------~kWs~IA~~LpGRT~~qcKnRW~~lLkk~ 115 (360)
..|..||+.+|+||..++|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 16999999999999999999999988654
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.66 E-value=1.2e-17 Score=142.51 Aligned_cols=83 Identities=17% Similarity=0.380 Sum_probs=78.0
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceeccccc----CCCCcccccccccccccC-----CCCccC-CCChHHHHH
Q 018154 8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNA----GLQRCGKSCRLRWTNYLR-----PDIKRG-RFAFEEEET 77 (360)
Q Consensus 8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l----~~~Rt~kqCR~RW~n~L~-----p~lkkg-~WT~EEDe~ 77 (360)
.++..++++||+|||+.|+++|.+||.++|..|++.+ + +|++.+|++||+++++ |.++++ +|++||+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 4577889999999999999999999988999999985 5 9999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCcchh
Q 018154 78 IIQLHSILGNKWSA 91 (360)
Q Consensus 78 Llelv~~~G~kWs~ 91 (360)
|++++..+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999977
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-17 Score=128.03 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=47.2
Q ss_pred ccccccccCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHh
Q 018154 54 RLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHI 112 (360)
Q Consensus 54 R~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lL 112 (360)
--||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999998653
No 13
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.2e-16 Score=123.80 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=60.1
Q ss_pred cCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCc
Q 018154 61 LRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTH 126 (360)
Q Consensus 61 L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~ 126 (360)
+.|.+++++||.|||++|+++|.+||.+|..||.+|||||+.|||+||+.++++.++. |+++.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5789999999999999999999999999999999999999999999999999988776 7776654
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=121.29 Aligned_cols=60 Identities=23% Similarity=0.367 Sum_probs=57.3
Q ss_pred ccCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCC
Q 018154 60 YLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMG 120 (360)
Q Consensus 60 ~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g 120 (360)
+|+|.+++++||.|||++|+++|.+||.+|.+||. ++|||++|||+||..+|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988744
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=122.82 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=57.6
Q ss_pred CCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCC
Q 018154 62 RPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPV 124 (360)
Q Consensus 62 ~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~ 124 (360)
.|.+++++||.|||++|+++|.+|| ++|..||.+|+|||+.|||+||.++|++.++++.|.+.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~e 67 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGP 67 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChH
Confidence 4678999999999999999999999 89999999999999999999999999999988554443
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=5.3e-17 Score=121.40 Aligned_cols=57 Identities=26% Similarity=0.549 Sum_probs=54.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCc
Q 018154 9 KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIK 66 (360)
Q Consensus 9 K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lk 66 (360)
.|++++++||+|||++|+++|.+||.++|..||+.|+ +|+++||+.||.++|+|+++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4789999999999999999999999889999999998 99999999999999999886
No 17
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.62 E-value=1.1e-16 Score=136.69 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=72.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCceeccccc----CCCCccccccccccccc-----CCCCccCCCChHH-HHHH
Q 018154 9 KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNA----GLQRCGKSCRLRWTNYL-----RPDIKRGRFAFEE-EETI 78 (360)
Q Consensus 9 K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l----~~~Rt~kqCR~RW~n~L-----~p~lkkg~WT~EE-De~L 78 (360)
+...++++||+|||+.|+++|++||.++|..|++.+ + +|++.+|++||++++ .|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 355678999999999999999999988999999864 5 899999999999999 7999999999999 8999
Q ss_pred HHHHHHhCCc
Q 018154 79 IQLHSILGNK 88 (360)
Q Consensus 79 lelv~~~G~k 88 (360)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999965
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.62 E-value=1e-16 Score=116.64 Aligned_cols=52 Identities=52% Similarity=0.965 Sum_probs=49.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCC
Q 018154 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64 (360)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~ 64 (360)
+++|+||+|||++|+++|.+||..+|..||+.|+ +|+++|||.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999778999999998 999999999999999985
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=4e-16 Score=116.58 Aligned_cols=55 Identities=22% Similarity=0.445 Sum_probs=52.0
Q ss_pred CCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhHHH
Q 018154 62 RPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRL 116 (360)
Q Consensus 62 ~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l 116 (360)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||.++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 699999999999999999999999998765
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.59 E-value=1.5e-16 Score=115.52 Aligned_cols=52 Identities=33% Similarity=0.756 Sum_probs=48.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCC
Q 018154 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPD 64 (360)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~ 64 (360)
+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999779999999998 999999999999999985
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=1.9e-16 Score=121.74 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=59.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCC-CCcccccccccccccCCCCccCCCC
Q 018154 8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGL-QRCGKSCRLRWTNYLRPDIKRGRFA 71 (360)
Q Consensus 8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~-~Rt~kqCR~RW~n~L~p~lkkg~WT 71 (360)
.++..++++||+|||++|+++|.+||.++|..||+.|++ +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 457789999999999999999999998899999999976 8999999999999999999987653
No 22
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=1.8e-15 Score=116.24 Aligned_cols=62 Identities=23% Similarity=0.346 Sum_probs=56.4
Q ss_pred ccCCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHHhhHHHhhCCC
Q 018154 60 YLRPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLP--GRTDNEIKNYWNTHIRKRLLRMGI 121 (360)
Q Consensus 60 ~L~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~Lp--GRT~~qcKnRW~~lLkk~l~k~g~ 121 (360)
..++..++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||.++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 345677899999999999999999999 79999999999 999999999999999999877543
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=1.4e-15 Score=110.49 Aligned_cols=50 Identities=30% Similarity=0.581 Sum_probs=46.4
Q ss_pred CccCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 65 IKRGRFAFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 65 lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 999999999999999999999999875
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.56 E-value=2.3e-15 Score=109.46 Aligned_cols=50 Identities=30% Similarity=0.688 Sum_probs=47.2
Q ss_pred CccCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 65 IKRGRFAFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 65 lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
+++++||+|||++|+++|.+||. +|..||..|+|||+.|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 699999999999999999999999875
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.54 E-value=1.8e-15 Score=128.66 Aligned_cols=79 Identities=20% Similarity=0.368 Sum_probs=71.5
Q ss_pred CCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCC
Q 018154 62 RPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSS 141 (360)
Q Consensus 62 ~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~S 141 (360)
.+..++++||+|||++|+++|.+||.+|..||..|+||++.||+.||.++|.+.+.+ .+|+.+++..|+.+...+|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~---~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISH---TPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCC---SCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccc---ccCCHHHHHHHHHHHHHHCc
Confidence 456789999999999999999999999999999999999999999999999998877 57888888888888888887
Q ss_pred CC
Q 018154 142 SF 143 (360)
Q Consensus 142 s~ 143 (360)
.|
T Consensus 83 ~W 84 (126)
T 3osg_A 83 QW 84 (126)
T ss_dssp CH
T ss_pred CH
Confidence 76
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.53 E-value=2e-15 Score=123.86 Aligned_cols=77 Identities=22% Similarity=0.484 Sum_probs=69.4
Q ss_pred CCccCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCCC
Q 018154 64 DIKRGRFAFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSS 142 (360)
Q Consensus 64 ~lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~Ss 142 (360)
++++|+||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+.+ .+|+.+++..|+.+...+|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~---~~Wt~eEd~~L~~~~~~~G~~ 77 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK---TSWTEEEDRIIYQAHKRLGNR 77 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCC---CCCCHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccc---cCCCHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999996 7999999999999999999999999998876 678888888888888888876
Q ss_pred C
Q 018154 143 F 143 (360)
Q Consensus 143 ~ 143 (360)
|
T Consensus 78 W 78 (105)
T 1gv2_A 78 W 78 (105)
T ss_dssp H
T ss_pred H
Confidence 6
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=9.8e-16 Score=116.89 Aligned_cols=56 Identities=32% Similarity=0.486 Sum_probs=49.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCC-CCcccccccccccccCCCCc
Q 018154 11 GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGL-QRCGKSCRLRWTNYLRPDIK 66 (360)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~-~Rt~kqCR~RW~n~L~p~lk 66 (360)
..+|++||+|||++|+++|.+||.++|..||+.+++ +|++.|||+||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 457899999999999999999998899999998642 89999999999999998763
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=8e-15 Score=107.15 Aligned_cols=49 Identities=27% Similarity=0.448 Sum_probs=46.4
Q ss_pred ccCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHHhhH
Q 018154 66 KRGRFAFEEEETIIQLHSILG-NKWSAIAARLP--GRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 66 kkg~WT~EEDe~Llelv~~~G-~kWs~IA~~Lp--GRT~~qcKnRW~~lLkk 114 (360)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999999864
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=9.4e-15 Score=109.55 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=49.4
Q ss_pred CCCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 62 RPDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 62 ~p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
.+.+++++||+|||++|+++|.+|| ++|.+||.+|+|||+.|||+||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3578899999999999999999999 8999999999999999999999998853
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=2.3e-15 Score=112.91 Aligned_cols=56 Identities=18% Similarity=0.540 Sum_probs=52.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCC
Q 018154 9 KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDI 65 (360)
Q Consensus 9 K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~l 65 (360)
-+.+++++||+|||++|+++|.+||.++|..||+.|+ +|+++|||.||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 3678999999999999999999999889999999998 9999999999999998653
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.50 E-value=5.8e-15 Score=122.06 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=68.2
Q ss_pred cCCCChHHHHHHHHHHHHhCC-cchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCCCCC
Q 018154 67 RGRFAFEEEETIIQLHSILGN-KWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFY 144 (360)
Q Consensus 67 kg~WT~EEDe~Llelv~~~G~-kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~Ss~~ 144 (360)
+|+||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+.+ .+|+.+++..|+.+...+|..|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~---~~WT~eEd~~L~~~~~~~G~~W~ 76 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRT---DPWSPEEDMLLDQKYAEYGPKWN 76 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTT---CCCCHHHHHHHHHHHHHTCSCHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccc---cccCHHHHHHHHHHHHHhCcCHH
Confidence 589999999999999999995 8999999999999999999999999998877 67888888888888888888764
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=112.81 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=53.3
Q ss_pred CCCCccCCCChHHHHHHHHHHHHhC------CcchhhcccCCCCCHHHHHHHHHHHhhHHHhh
Q 018154 62 RPDIKRGRFAFEEEETIIQLHSILG------NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLR 118 (360)
Q Consensus 62 ~p~lkkg~WT~EEDe~Llelv~~~G------~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k 118 (360)
+|.+++++||.|||++|+++|.+|| ++|.+||.+|+|||+.|||+||..+|.+.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999 78999999999999999999999999877655
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.48 E-value=1.4e-14 Score=123.79 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=68.7
Q ss_pred cCCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhccccCCCCC
Q 018154 67 RGRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSFY 144 (360)
Q Consensus 67 kg~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~ssil~Ss~~ 144 (360)
+|+||+|||++|+++|..|| ++|..||..|||||+.||+.||.++|.+.+.+ .+|+.+++..|+.+...+|..|.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~---~~Wt~eEd~~L~~~~~~~G~~W~ 77 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVK---HAWTPEEDETIFRNYLKLGSKWS 77 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCC---SCCCHHHHHHHHHHHHHSCSCHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccC---CCCCHHHHHHHHHHHHHHCcCHH
Confidence 68999999999999999999 78999999999999999999999999998877 57888888888888888887763
No 34
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-15 Score=115.33 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=54.1
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccC
Q 018154 7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRG 68 (360)
Q Consensus 7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg 68 (360)
+..|.+++++||+|||++|+++|.++| .+|..||+ ++ +|+++|||.||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 357899999999999999999999999 59999999 76 8999999999999999877664
No 35
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.48 E-value=2.6e-14 Score=108.96 Aligned_cols=52 Identities=31% Similarity=0.502 Sum_probs=46.8
Q ss_pred CccCCCChHHHHHHHHHHHHhC-CcchhhcccCC--CCCHHHHHHHHHHHhhHHH
Q 018154 65 IKRGRFAFEEEETIIQLHSILG-NKWSAIAARLP--GRTDNEIKNYWNTHIRKRL 116 (360)
Q Consensus 65 lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~Lp--GRT~~qcKnRW~~lLkk~l 116 (360)
.++++||+|||++|+++|.+|| ++|..||..++ |||+.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4788999999999999999999 69999999866 9999999999999987643
No 36
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.47 E-value=6.1e-15 Score=107.80 Aligned_cols=50 Identities=28% Similarity=0.512 Sum_probs=47.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCceecccccCC-CCcccccccccccccC
Q 018154 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGL-QRCGKSCRLRWTNYLR 62 (360)
Q Consensus 13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~-~Rt~kqCR~RW~n~L~ 62 (360)
++++||+|||++|+++|.+||.++|..||+.+++ +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999976 6999999999999875
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=4.9e-14 Score=105.15 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=46.6
Q ss_pred CCCccCCCChHHHHHHHHHHHHhC-CcchhhcccCC-CCCHHHHHHHHHHHh
Q 018154 63 PDIKRGRFAFEEEETIIQLHSILG-NKWSAIAARLP-GRTDNEIKNYWNTHI 112 (360)
Q Consensus 63 p~lkkg~WT~EEDe~Llelv~~~G-~kWs~IA~~Lp-GRT~~qcKnRW~~lL 112 (360)
..+.+++||+|||++|+++|.+|| ++|.+||.+|+ |||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999 99999999999 999999999998875
No 38
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5.8e-15 Score=114.88 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=56.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCceecccccCCCCcccccccccccccCCCCccCC
Q 018154 8 DKSGLKKGPWTPEEDQKLIDYIQKHGY-----GNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGR 69 (360)
Q Consensus 8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~-----~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~ 69 (360)
.+|++++++||+|||++|+++|.+||. .+|..||+.|+ +|+++|||.||.++|.+.++.|-
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999996 78999999999 99999999999999988776653
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.42 E-value=2.1e-14 Score=107.17 Aligned_cols=51 Identities=25% Similarity=0.490 Sum_probs=47.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccccc
Q 018154 11 GLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 (360)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L 61 (360)
.+.+++||+|||++|+++|.+||.++|..||+.|+.+|+++|||.||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999987899999999998875
No 40
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.11 E-value=2e-14 Score=116.01 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=52.7
Q ss_pred ccCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHH
Q 018154 60 YLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (360)
Q Consensus 60 ~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~ 115 (360)
.+.|.+++++||.|||++|+++|.+||.+|..||.+|+|||+.|||+||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999998754
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=2.2e-14 Score=111.16 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=53.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCcc
Q 018154 8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKR 67 (360)
Q Consensus 8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkk 67 (360)
..|.+++++||+|||++|+++|.+|| .+|..||+.|+ +|++.||+.||..+|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999 59999999998 999999999999999876665
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.36 E-value=2.6e-13 Score=113.14 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=67.9
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccC---CCCccccccccccccc-----CCCCccCCCChHHHHH-
Q 018154 7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG---LQRCGKSCRLRWTNYL-----RPDIKRGRFAFEEEET- 77 (360)
Q Consensus 7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~---~~Rt~kqCR~RW~n~L-----~p~lkkg~WT~EEDe~- 77 (360)
-.+...++++||+|||++|+++|.+||.++|..|++.++ .+|++.+|++||++++ .|.+++|.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 345788999999999999999999999889999999762 3999999999999999 5889998877777655
Q ss_pred HHHHHHHhC
Q 018154 78 IIQLHSILG 86 (360)
Q Consensus 78 Llelv~~~G 86 (360)
+++|+..+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.33 E-value=2.2e-13 Score=106.65 Aligned_cols=61 Identities=25% Similarity=0.349 Sum_probs=47.7
Q ss_pred CCCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCc
Q 018154 2 GRAPCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIK 66 (360)
Q Consensus 2 gR~p~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lk 66 (360)
+|.--...|++++|+||+|||++|+++|.++| .+|..||+.| +|++.+|+.||.. |+...+
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 35556678999999999999999999999999 5699999999 7999999999985 544443
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.33 E-value=3.7e-13 Score=107.76 Aligned_cols=69 Identities=20% Similarity=0.485 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceecccc----cCCCCccccccccccccc-----CCCCccC-CCChHHHHHHHHHHHH
Q 018154 15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKN----AGLQRCGKSCRLRWTNYL-----RPDIKRG-RFAFEEEETIIQLHSI 84 (360)
Q Consensus 15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~----l~~~Rt~kqCR~RW~n~L-----~p~lkkg-~WT~EEDe~Llelv~~ 84 (360)
++||+|||++|+++|.+||.++|..|++. ++ +|++.+|++||++++ .|.+++| +...+...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999998899999985 66 999999999999988 5665554 6777888889988875
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.32 E-value=1.2e-12 Score=102.46 Aligned_cols=52 Identities=10% Similarity=0.219 Sum_probs=47.8
Q ss_pred CCCCccCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 62 RPDIKRGRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 62 ~p~lkkg~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
++...+++||.|||++|++++.+|| ++|.+||.+|||||.++||+||..+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3556789999999999999999999 789999999999999999999998864
No 46
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.29 E-value=5.3e-13 Score=113.79 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=68.2
Q ss_pred cCCCCccCCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHHhh-----HHHhhCCCCCCCcCccc
Q 018154 61 LRPDIKRGRFAFEEEETIIQLHSILGN-KWSAIAAR----LPGRTDNEIKNYWNTHIR-----KRLLRMGIDPVTHSPRL 130 (360)
Q Consensus 61 L~p~lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~----LpGRT~~qcKnRW~~lLk-----k~l~k~g~~p~t~~~~~ 130 (360)
+.+..++++||.|||+.|+++|.+||. +|+.|+.. |+|||+.+||+||+++++ +.+++ + .+++...+.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~kr-g-~~~p~e~~~ 88 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR-G-EPVPQDLLD 88 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCC-C-SCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccC-C-CCCCHHHHH
Confidence 556778999999999999999999995 99999997 489999999999999998 44443 2 255555556
Q ss_pred chhhhccccCCCCCC
Q 018154 131 DLLDLSSILSSSFYS 145 (360)
Q Consensus 131 ~Ll~~ssil~Ss~~~ 145 (360)
.++.++..+|+.|+.
T Consensus 89 rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 89 RVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHccchhc
Confidence 677888888887765
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=1.8e-12 Score=102.77 Aligned_cols=48 Identities=10% Similarity=0.210 Sum_probs=45.1
Q ss_pred CCccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHH
Q 018154 64 DIKRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTH 111 (360)
Q Consensus 64 ~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~l 111 (360)
...+++||.|||++|+++|.+||++|.+||.+|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999766
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.25 E-value=2.1e-12 Score=102.39 Aligned_cols=52 Identities=19% Similarity=0.451 Sum_probs=48.9
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccc
Q 018154 7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60 (360)
Q Consensus 7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~ 60 (360)
+.+....+++||+|||++|+++|.+|| ++|..||+.|+ +|++.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 456777889999999999999999999 99999999999 99999999999998
No 49
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.87 E-value=9.4e-13 Score=106.24 Aligned_cols=56 Identities=23% Similarity=0.451 Sum_probs=51.5
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccCC
Q 018154 6 CCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRP 63 (360)
Q Consensus 6 ~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p 63 (360)
...-|++++|+||+|||++|+++|.+|| .+|..||+.|+ +|++.+|+.||.++|+.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 3456889999999999999999999999 58999999999 99999999999999863
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.18 E-value=1.9e-11 Score=97.84 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=44.4
Q ss_pred CCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHHhhHH
Q 018154 68 GRFAFEEEETIIQLHSILGN-KWSAIAAR----LPGRTDNEIKNYWNTHIRKR 115 (360)
Q Consensus 68 g~WT~EEDe~Llelv~~~G~-kWs~IA~~----LpGRT~~qcKnRW~~lLkk~ 115 (360)
++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999995 99999985 89999999999999999654
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.18 E-value=1e-11 Score=116.55 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=58.7
Q ss_pred CCCccCCCChHHHHHHHHHHHHhCCc------chhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCCCCcCcccchhhhc
Q 018154 63 PDIKRGRFAFEEEETIIQLHSILGNK------WSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLS 136 (360)
Q Consensus 63 p~lkkg~WT~EEDe~Llelv~~~G~k------Ws~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p~t~~~~~~Ll~~s 136 (360)
+.+++++||+|||++|+++|.+||++ |.+||+.|||||+++||+||+.+|++++.. . ++..++..|+...
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~-v---y~~ded~~Li~d~ 79 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY-V---YEVDKFGKLVRDD 79 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC-E---ECBCTTSCBCBCT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhccc-c---cccCcchhhhhcc
Confidence 45788999999999999999999975 999999999999999999999999998762 2 4444444444443
Q ss_pred cccCCCCCCCc
Q 018154 137 SILSSSFYSSS 147 (360)
Q Consensus 137 sil~Ss~~~sS 147 (360)
. |+ |..++
T Consensus 80 ~--Gn-~ikis 87 (246)
T 1ign_A 80 D--GN-LIKTK 87 (246)
T ss_dssp T--SC-BCEES
T ss_pred C--CC-ceeee
Confidence 3 44 44443
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.17 E-value=3.4e-11 Score=100.33 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=47.8
Q ss_pred CCCccCCCChHHHHHHHHHHHHhCC-cchhhcccC----CCCCHHHHHHHHHHHhhHH
Q 018154 63 PDIKRGRFAFEEEETIIQLHSILGN-KWSAIAARL----PGRTDNEIKNYWNTHIRKR 115 (360)
Q Consensus 63 p~lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~L----pGRT~~qcKnRW~~lLkk~ 115 (360)
+..++++||.|||+.|+++|.+||. +|+.|+..+ +|||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4567899999999999999999995 999999965 8999999999999999643
No 53
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.15 E-value=4.2e-12 Score=99.39 Aligned_cols=56 Identities=14% Similarity=0.332 Sum_probs=50.5
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHhC---CCCceecccccCCCCcccccccccccccC
Q 018154 6 CCDKSGLKKGPWTPEEDQKLIDYIQKHG---YGNWRTLPKNAGLQRCGKSCRLRWTNYLR 62 (360)
Q Consensus 6 ~~~K~~lkKg~WT~EEDe~L~~lV~k~G---~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~ 62 (360)
.-+++...+++||+|||++|++++.+|| +.+|.+||+.|| ||+.++|+.||..++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3467788899999999999999999999 358999999999 9999999999998765
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.15 E-value=3.1e-11 Score=98.56 Aligned_cols=58 Identities=17% Similarity=0.410 Sum_probs=48.9
Q ss_pred ccCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHHhhHH-HhhCCCCC
Q 018154 66 KRGRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIRKR-LLRMGIDP 123 (360)
Q Consensus 66 kkg~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~~lLkk~-l~k~g~~p 123 (360)
.+++||.|||++|++++.+|| ++|.+||.+|||||.++||+||+.+++.. ....|..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp 69 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 69 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 467999999999999999996 68999999999999999999999998654 33444444
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=3.8e-11 Score=91.24 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=45.6
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcchhhc---ccCCCCCHHHHHHHHHHHhhH
Q 018154 66 KRGRFAFEEEETIIQLHSILGNKWSAIA---ARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 66 kkg~WT~EEDe~Llelv~~~G~kWs~IA---~~LpGRT~~qcKnRW~~lLkk 114 (360)
++.+||+|||+.|+++|++||.+|..|+ ..+++||..++|+||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5779999999999999999999999999 678999999999999988754
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.12 E-value=4.1e-11 Score=102.28 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=46.8
Q ss_pred CCCccCCCChHHHHHHHHHHHHhCC-cchhhccc----CCCCCHHHHHHHHHHHhhH
Q 018154 63 PDIKRGRFAFEEEETIIQLHSILGN-KWSAIAAR----LPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 63 p~lkkg~WT~EEDe~Llelv~~~G~-kWs~IA~~----LpGRT~~qcKnRW~~lLkk 114 (360)
...++++||.|||+.|+++|.+||. +|+.|+.. |+|||+.+||+||+++++.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3457889999999999999999995 99999986 4899999999999999953
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2.8e-09 Score=80.12 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=44.4
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 66 KRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 66 kkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
..++||+||++++++++.+||.+|..||..||+||..+|+.+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999977643
No 58
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.83 E-value=2.6e-09 Score=83.25 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=49.6
Q ss_pred CCccCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCC
Q 018154 64 DIKRGRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDP 123 (360)
Q Consensus 64 ~lkkg~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p 123 (360)
..+.+.||.|||++|.+++.+|+ ++|.+||..+ |||..+|+.||+.+.+......|..|
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~vp 67 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMVS 67 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCCC
Confidence 34678999999999999999997 6799999998 99999999999998766444445444
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.81 E-value=4e-10 Score=91.98 Aligned_cols=48 Identities=10% Similarity=0.333 Sum_probs=43.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhC---CCCceecccccCCCCccccccccccccc
Q 018154 13 KKGPWTPEEDQKLIDYIQKHG---YGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 (360)
Q Consensus 13 kKg~WT~EEDe~L~~lV~k~G---~~nW~~IAk~l~~~Rt~kqCR~RW~n~L 61 (360)
.+++||+|||++|++++.+|| +.+|..||+.+| ||+.++|+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 468999999999999999997 467999999999 999999999998864
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.79 E-value=4.4e-09 Score=85.86 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=60.5
Q ss_pred ccccccccccccCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccC-----CCCCHHHHHHHHHHHhhHHHhhCC
Q 018154 50 GKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARL-----PGRTDNEIKNYWNTHIRKRLLRMG 120 (360)
Q Consensus 50 ~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~L-----pGRT~~qcKnRW~~lLkk~l~k~g 120 (360)
+.-+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||+.+.++.+...+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 36678899999976 89999999999999999999999999998 589999999999999988777654
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.67 E-value=3.9e-09 Score=80.15 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=44.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCceecc---cccCCCCcccccccccccccCC
Q 018154 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLP---KNAGLQRCGKSCRLRWTNYLRP 63 (360)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IA---k~l~~~Rt~kqCR~RW~n~L~p 63 (360)
.++.+||+|||+.|+++|++||. +|..|+ ..+. +|+...+++||++..+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 47899999999999999999995 999999 4555 99999999999997653
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=8.3e-09 Score=77.50 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=46.8
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccccc
Q 018154 7 CDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 (360)
Q Consensus 7 ~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L 61 (360)
.++.....++||+||++++++++.+|| .+|..||+.|+ +|+..+|+.+|....
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 455556779999999999999999999 79999999998 999999999986543
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.57 E-value=4.9e-08 Score=91.00 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=45.9
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 66 KRGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 66 kkg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
..++||+||++++++++.+||.+|..||+.|++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999988754
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.43 E-value=9.9e-08 Score=97.45 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=42.3
Q ss_pred CCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHh
Q 018154 68 GRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHI 112 (360)
Q Consensus 68 g~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lL 112 (360)
.+||.||-+++++++.+||.+|..||.+++.||..|||++|..+.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999997654
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.40 E-value=1.7e-07 Score=73.30 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=43.1
Q ss_pred cCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 67 RGRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 67 kg~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
...||.+|+++|.+++..|+ ++|.+||..+||||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46899999999999999998 479999999999999999999988854
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.33 E-value=4.9e-08 Score=76.01 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=44.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhC---CCCceecccccCCCCcccccccccccccC
Q 018154 10 SGLKKGPWTPEEDQKLIDYIQKHG---YGNWRTLPKNAGLQRCGKSCRLRWTNYLR 62 (360)
Q Consensus 10 ~~lkKg~WT~EEDe~L~~lV~k~G---~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~ 62 (360)
.+.+++.||.|||++|.+++.+|+ +.+|.+||+.+ +|+..+|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 345678999999999999999998 45699999997 5999999999987654
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.22 E-value=9.6e-07 Score=66.16 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=42.2
Q ss_pred cCCCChHHHHHHHHHHHHh--------CC-cchhhcc-cCCCCCHHHHHHHHHHHhh
Q 018154 67 RGRFAFEEEETIIQLHSIL--------GN-KWSAIAA-RLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 67 kg~WT~EEDe~Llelv~~~--------G~-kWs~IA~-~LpGRT~~qcKnRW~~lLk 113 (360)
+.+||+|||..|++.|.++ |+ -|.++|. .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4689999999999999999 43 3999999 8999999999999988774
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.17 E-value=2.5e-07 Score=69.36 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=42.6
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCceeccc-ccCCCCcccccccccccccC
Q 018154 14 KGPWTPEEDQKLIDYIQKH--------GYGNWRTLPK-NAGLQRCGKSCRLRWTNYLR 62 (360)
Q Consensus 14 Kg~WT~EEDe~L~~lV~k~--------G~~nW~~IAk-~l~~~Rt~kqCR~RW~n~L~ 62 (360)
+.+||+|||+.|+++|.++ |..-|..+++ .++ .++-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5789999999999999999 4334999999 787 9999999999999875
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.12 E-value=5.6e-07 Score=83.92 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=46.9
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccC
Q 018154 9 KSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLR 62 (360)
Q Consensus 9 K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~ 62 (360)
......++||+||++++++++.+|| .+|..||+.++ +|+..||+.+|.++.+
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3345678999999999999999999 89999999999 9999999999988765
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.07 E-value=6.2e-07 Score=70.14 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=43.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCceecccccCCCCcccccccccccccCC
Q 018154 14 KGPWTPEEDQKLIDYIQKHGY---GNWRTLPKNAGLQRCGKSCRLRWTNYLRP 63 (360)
Q Consensus 14 Kg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p 63 (360)
...||.+|+++|.+++..|+. ++|..||..+| +|+..+|+.||...++-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 468999999999999999974 57999999999 99999999999987653
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=9.3e-06 Score=61.29 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=45.5
Q ss_pred CCCCccCCCChHHHHHHHHHHHHhCCcchhhcc-cCCCCCHHHHHHHHHHH
Q 018154 62 RPDIKRGRFAFEEEETIIQLHSILGNKWSAIAA-RLPGRTDNEIKNYWNTH 111 (360)
Q Consensus 62 ~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~-~LpGRT~~qcKnRW~~l 111 (360)
.|.++...||+||-++..+++.+||.+|..|++ .|++||..+|...|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 467788899999999999999999999999999 59999999999988654
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.92 E-value=1.4e-05 Score=77.57 Aligned_cols=100 Identities=20% Similarity=0.242 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccc-------cccc----------------------------
Q 018154 15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRL-------RWTN---------------------------- 59 (360)
Q Consensus 15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~-------RW~n---------------------------- 59 (360)
+.||..|...++.++.+||..+|..||..++ +++...++. ||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999998 888776654 1110
Q ss_pred ---------------ccCCCCccCCCChHHHHHHHHHHHHhC----Ccchhhcc------------cCCCCCHHHHHHHH
Q 018154 60 ---------------YLRPDIKRGRFAFEEEETIIQLHSILG----NKWSAIAA------------RLPGRTDNEIKNYW 108 (360)
Q Consensus 60 ---------------~L~p~lkkg~WT~EEDe~Llelv~~~G----~kWs~IA~------------~LpGRT~~qcKnRW 108 (360)
+..+..++..||++||..||-++.+|| +.|..|.. .+..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 001222456899999999999999999 56999962 34689999999999
Q ss_pred HHHhhHH
Q 018154 109 NTHIRKR 115 (360)
Q Consensus 109 ~~lLkk~ 115 (360)
..+++-.
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998543
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.89 E-value=3.2e-06 Score=66.16 Aligned_cols=43 Identities=23% Similarity=0.439 Sum_probs=38.3
Q ss_pred cCCCChHHHHHHHHHHHHhC----CcchhhcccCCCCCHHHHHHHHH
Q 018154 67 RGRFAFEEEETIIQLHSILG----NKWSAIAARLPGRTDNEIKNYWN 109 (360)
Q Consensus 67 kg~WT~EEDe~Llelv~~~G----~kWs~IA~~LpGRT~~qcKnRW~ 109 (360)
.+.||.+|+++|.++..+|+ .+|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 45899999999999999998 47999999999999999998873
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.73 E-value=2.7e-05 Score=63.21 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHHhCC---cchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 69 RFAFEEEETIIQLHSILGN---KWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 69 ~WT~EEDe~Llelv~~~G~---kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
-||.|||..||..+.+-|. .|+.||..|.+|+.+|+++|++.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6999999999999999995 799999999999999999999998753
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.62 E-value=9.8e-05 Score=60.16 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=50.7
Q ss_pred ccccccCCCCccCCCChHHHHHHHHHHHHhCCcchhhcccCC-----CCCHHHHHHHHHHHhhHHHhhC
Q 018154 56 RWTNYLRPDIKRGRFAFEEEETIIQLHSILGNKWSAIAARLP-----GRTDNEIKNYWNTHIRKRLLRM 119 (360)
Q Consensus 56 RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~kWs~IA~~Lp-----GRT~~qcKnRW~~lLkk~l~k~ 119 (360)
.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||+.+.++.++..
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4445554 3689999999999999999999999998763 7999999999999998776653
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.60 E-value=9.7e-06 Score=63.42 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=38.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCceecccccCCCCcccccccccc
Q 018154 14 KGPWTPEEDQKLIDYIQKHGY---GNWRTLPKNAGLQRCGKSCRLRWT 58 (360)
Q Consensus 14 Kg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~l~~~Rt~kqCR~RW~ 58 (360)
.+.||.||+++|..++.+|+. ..|.+||+.+| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 568999999999999999974 47999999999 999999999885
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=2.5e-05 Score=58.91 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=44.3
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCceeccc-ccCCCCccccccccccc
Q 018154 8 DKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPK-NAGLQRCGKSCRLRWTN 59 (360)
Q Consensus 8 ~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk-~l~~~Rt~kqCR~RW~n 59 (360)
-.|.++...||+||-++..+++.+|| .+|..|++ .++ +|+..+|...|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 35778889999999999999999999 79999999 588 9999999886643
No 78
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.73 E-value=9.9e-06 Score=62.48 Aligned_cols=44 Identities=14% Similarity=0.328 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHHhCC---cchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 69 RFAFEEEETIIQLHSILGN---KWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 69 ~WT~EEDe~Llelv~~~G~---kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
-||.|||..|+..+.+-|. .|+.||..| +|+++||++|+..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999996 799999999 9999999999988863
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.33 E-value=0.00028 Score=54.25 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=41.3
Q ss_pred cCCCChHHHHHHHHHHHHhCCcchhhcc-cCCCCCHHHHHHHHHHH
Q 018154 67 RGRFAFEEEETIIQLHSILGNKWSAIAA-RLPGRTDNEIKNYWNTH 111 (360)
Q Consensus 67 kg~WT~EEDe~Llelv~~~G~kWs~IA~-~LpGRT~~qcKnRW~~l 111 (360)
...||+||-++..+++.+||.+|..|++ .|++||..+|...|+..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 4589999999999999999999999999 59999999999988743
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.30 E-value=0.00023 Score=57.75 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=41.8
Q ss_pred cCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHH
Q 018154 67 RGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTH 111 (360)
Q Consensus 67 kg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~l 111 (360)
...||+||.++..++...||.+|..||..||+||..+|-..|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 357999999999999999999999999999999999999988654
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.13 E-value=0.00011 Score=75.16 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=44.7
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccccc
Q 018154 10 SGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 (360)
Q Consensus 10 ~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L 61 (360)
......+||.||-+++++++.+|| .+|..||+.++ +|+..|||.+|.++-
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344568999999999999999999 79999999999 999999999887643
No 82
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.06 E-value=0.0011 Score=59.69 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=36.7
Q ss_pred CCCChHHHHHHHHHHHHhC-Ccchhhcc--cC------------CCCCHHHHHHHHHHHhh
Q 018154 68 GRFAFEEEETIIQLHSILG-NKWSAIAA--RL------------PGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 68 g~WT~EEDe~Llelv~~~G-~kWs~IA~--~L------------pGRT~~qcKnRW~~lLk 113 (360)
..||.+||..|+..+.+|| ++|..|-. .| ..++...+..|...+|+
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 3699999999999999999 99999853 21 12456789999887774
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.94 E-value=0.00013 Score=59.52 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=42.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCceecccccC----CCCcccccccccccccC
Q 018154 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG----LQRCGKSCRLRWTNYLR 62 (360)
Q Consensus 13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~----~~Rt~kqCR~RW~n~L~ 62 (360)
..++||.||++.|+++++++| .+|..|+..+. .+|+...++.||..+.+
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 448999999999999999999 89999999883 27999999999877543
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.88 E-value=0.00065 Score=53.50 Aligned_cols=48 Identities=13% Similarity=0.439 Sum_probs=40.4
Q ss_pred cCCCChHHHHHHHHHHHHhC----------CcchhhcccCC----CCCHHHHHHHHHHHhhH
Q 018154 67 RGRFAFEEEETIIQLHSILG----------NKWSAIAARLP----GRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 67 kg~WT~EEDe~Llelv~~~G----------~kWs~IA~~Lp----GRT~~qcKnRW~~lLkk 114 (360)
...||.+|-..||+++..+. ..|..||..|. .||+.||+.+|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999997643 25999998873 69999999999988754
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.70 E-value=0.00045 Score=53.11 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=40.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCceeccc-ccCCCCccccccccccc
Q 018154 13 KKGPWTPEEDQKLIDYIQKHGYGNWRTLPK-NAGLQRCGKSCRLRWTN 59 (360)
Q Consensus 13 kKg~WT~EEDe~L~~lV~k~G~~nW~~IAk-~l~~~Rt~kqCR~RW~n 59 (360)
....||+||-++..+++.+|| .+|..|++ .++ +|+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 557899999999999999999 79999999 588 9999999886653
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.69 E-value=0.00044 Score=56.11 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=39.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccccccc
Q 018154 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTN 59 (360)
Q Consensus 14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n 59 (360)
...||+||.+++.++...|| .+|..|++.++ +|+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence 46799999999999999999 79999999998 9999999886643
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.49 E-value=0.00012 Score=57.85 Aligned_cols=49 Identities=22% Similarity=0.594 Sum_probs=40.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhC------CC---Cceeccccc---CCCCccccccccccccc
Q 018154 13 KKGPWTPEEDQKLIDYIQKHG------YG---NWRTLPKNA---GLQRCGKSCRLRWTNYL 61 (360)
Q Consensus 13 kKg~WT~EEDe~L~~lV~k~G------~~---nW~~IAk~l---~~~Rt~kqCR~RW~n~L 61 (360)
+...||.+|...|++++.... .. -|..||..| |..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 568899999999999998642 11 499999885 46899999999998754
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.19 E-value=0.0088 Score=59.44 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceecccccCCCCccccccc-------ccccc---------------------------
Q 018154 15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRL-------RWTNY--------------------------- 60 (360)
Q Consensus 15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~-------RW~n~--------------------------- 60 (360)
+.|+.-|=..++.++.+||..+-..||..|+.+++...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998889999999853566555443 11110
Q ss_pred -------------c----CCC-CccCCCChHHHHHHHHHHHHhC----Ccchhhccc------------CCCCCHHHHHH
Q 018154 61 -------------L----RPD-IKRGRFAFEEEETIIQLHSILG----NKWSAIAAR------------LPGRTDNEIKN 106 (360)
Q Consensus 61 -------------L----~p~-lkkg~WT~EEDe~Llelv~~~G----~kWs~IA~~------------LpGRT~~qcKn 106 (360)
| .+. .++..||.+||..||-++.+|| +.|.+|-.. +..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 1 011 1345799999999999999999 569999432 46799999999
Q ss_pred HHHHHhhHHHh
Q 018154 107 YWNTHIRKRLL 117 (360)
Q Consensus 107 RW~~lLkk~l~ 117 (360)
|...+++-..+
T Consensus 284 Rc~tLi~~IeK 294 (374)
T 2y9y_A 284 RGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999965433
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.76 E-value=0.0019 Score=52.45 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCceecccccCCCCcccccccccccc
Q 018154 15 GPWTPEEDQKLIDYIQKHGY--GNWRTLPKNAGLQRCGKSCRLRWTNY 60 (360)
Q Consensus 15 g~WT~EEDe~L~~lV~k~G~--~nW~~IAk~l~~~Rt~kqCR~RW~n~ 60 (360)
.-||.|||..|+...++.|+ ..|..||+.++ +|++.|+++|++..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 46999999999999999985 47999999998 99999999998664
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.62 E-value=0.002 Score=49.75 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=41.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC--CCceecccccCCCCcccccccccccccC
Q 018154 13 KKGPWTPEEDQKLIDYIQKHGY--GNWRTLPKNAGLQRCGKSCRLRWTNYLR 62 (360)
Q Consensus 13 kKg~WT~EEDe~L~~lV~k~G~--~nW~~IAk~l~~~Rt~kqCR~RW~n~L~ 62 (360)
.--.||.|||..|+..+++.|+ ..|..||+.+ +|++.|+..|+...++
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 3457999999999999999995 3699999888 5999999999988664
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.82 E-value=0.022 Score=51.16 Aligned_cols=40 Identities=30% Similarity=0.630 Sum_probs=33.3
Q ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCceecccc
Q 018154 4 APCCDKSGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKN 43 (360)
Q Consensus 4 ~p~~~K~~lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~ 43 (360)
-|++.++.-....||.+||..|+.+|.+||.++|..|-..
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3555666666678999999999999999999999999653
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.27 E-value=0.032 Score=45.34 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=40.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCceecccccC----CCCccccccccccccc
Q 018154 12 LKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAG----LQRCGKSCRLRWTNYL 61 (360)
Q Consensus 12 lkKg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~----~~Rt~kqCR~RW~n~L 61 (360)
++...||.||...|.+++++++ -.|-.|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 89999998763 2577778888877654
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.23 E-value=0.23 Score=37.69 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=40.5
Q ss_pred CccCCCChHHHHHHHHHHHHhCCc---chhhcccC--CCCCHHHHHHHHHHHh
Q 018154 65 IKRGRFAFEEEETIIQLHSILGNK---WSAIAARL--PGRTDNEIKNYWNTHI 112 (360)
Q Consensus 65 lkkg~WT~EEDe~Llelv~~~G~k---Ws~IA~~L--pGRT~~qcKnRW~~lL 112 (360)
..+-.||+|..+..+++|..+|.. +..|...| +|.|..+|+.+...+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999955 67887765 6899999999988764
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.08 E-value=0.21 Score=48.40 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 68 GRFAFEEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 68 g~WT~EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
+.||..|....+.++.+|| ++|..||..|+|+|...|+.+......
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4799999999999999999 689999999999999999877666553
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.89 E-value=0.24 Score=47.14 Aligned_cols=28 Identities=43% Similarity=0.847 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceeccc
Q 018154 15 GPWTPEEDQKLIDYIQKHGYGNWRTLPK 42 (360)
Q Consensus 15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk 42 (360)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 5699999999999999999999999964
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=86.16 E-value=0.4 Score=45.64 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=24.5
Q ss_pred CCCChHHHHHHHHHHHHhC-Ccchhhcc
Q 018154 68 GRFAFEEEETIIQLHSILG-NKWSAIAA 94 (360)
Q Consensus 68 g~WT~EEDe~Llelv~~~G-~kWs~IA~ 94 (360)
..|+.+||..||..|.+|| +.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999 99999953
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=77.09 E-value=0.71 Score=34.95 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=33.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCC---ceecccccCC-CCcccccccccc
Q 018154 11 GLKKGPWTPEEDQKLIDYIQKHGYGN---WRTLPKNAGL-QRCGKSCRLRWT 58 (360)
Q Consensus 11 ~lkKg~WT~EEDe~L~~lV~k~G~~n---W~~IAk~l~~-~Rt~kqCR~RW~ 58 (360)
...+-.||+|.-++++++|...| .+ +..|.+.|+. +.+..+++.|.+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 34678999999999999999999 44 5667666542 455555555443
No 98
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=54.23 E-value=9.4 Score=33.90 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=18.2
Q ss_pred CCcCCCCHHHHHHH--------HHHHHHhC
Q 018154 12 LKKGPWTPEEDQKL--------IDYIQKHG 33 (360)
Q Consensus 12 lkKg~WT~EEDe~L--------~~lV~k~G 33 (360)
-..|-||+|+|+.| .++++|||
T Consensus 112 N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 112 NVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp TCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 36799999999987 46788887
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=53.21 E-value=11 Score=26.49 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 73 EEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 73 EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
+.+..++.++...|-.+.+||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455666667777889999999999 88999998877666543
No 100
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=51.24 E-value=31 Score=27.27 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccccC------CCCccCCCChHHHHHHHHHHHHhC-C
Q 018154 15 GPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLR------PDIKRGRFAFEEEETIIQLHSILG-N 87 (360)
Q Consensus 15 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~------p~lkkg~WT~EEDe~Llelv~~~G-~ 87 (360)
...|.++-..++.++ ..| ..-..||+.++ .+...++ ||..... ........+.+++..|+++ ...+ -
T Consensus 5 ~~~s~~~r~~i~~~~-~~G-~s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLN-VSLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTT-CCHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCC
T ss_pred ccCCHHHHHHHHHHH-HcC-CCHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCC
Confidence 357888888888777 446 56788999887 4433333 3332211 1112235788888888877 3333 2
Q ss_pred cchhhcccCCC--CCHHHHHHH
Q 018154 88 KWSAIAARLPG--RTDNEIKNY 107 (360)
Q Consensus 88 kWs~IA~~LpG--RT~~qcKnR 107 (360)
.=.+|+..+ | -+...|...
T Consensus 79 s~~~i~~~l-g~~~s~~tV~r~ 99 (141)
T 1u78_A 79 TARDIRNEL-QLSASKRTILNV 99 (141)
T ss_dssp CHHHHHHHT-TCCSCHHHHHHH
T ss_pred CHHHHHHHH-CCCccHHHHHHH
Confidence 235677777 4 455555543
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=48.26 E-value=15 Score=26.66 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH----hCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 73 EEEETIIQLHSI----LGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 73 EEDe~Llelv~~----~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
+.+..++.++.. .|-.|.+||..+ |-+...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 445555556554 577899999999 89999999877776643
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=47.31 E-value=9.8 Score=31.16 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 77 TIIQLHSILGN--------KWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 77 ~Llelv~~~G~--------kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
+|..+|.+.|+ .|.+||..|.--....+|..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 58888888884 699999988554478899999988854
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=46.35 E-value=21 Score=28.44 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=29.4
Q ss_pred HHHHHHHHHhC--------CcchhhcccCCCCC----HHHHHHHHHHHhhH
Q 018154 76 ETIIQLHSILG--------NKWSAIAARLPGRT----DNEIKNYWNTHIRK 114 (360)
Q Consensus 76 e~Llelv~~~G--------~kWs~IA~~LpGRT----~~qcKnRW~~lLkk 114 (360)
-+|..+|.+.| +.|.+||..|.--. ...+|..|.++|-+
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 45778888888 36999999984322 46889999888855
No 104
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=44.74 E-value=20 Score=29.37 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCC--------cchhhcccCCCCC----HHHHHHHHHHHhhH
Q 018154 76 ETIIQLHSILGN--------KWSAIAARLPGRT----DNEIKNYWNTHIRK 114 (360)
Q Consensus 76 e~Llelv~~~G~--------kWs~IA~~LpGRT----~~qcKnRW~~lLkk 114 (360)
-+|..+|.+.|+ .|.+||..|.--. ...+|..|..+|-+
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 468888888883 6999999883322 46889999988854
No 105
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=43.27 E-value=31 Score=34.15 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=38.4
Q ss_pred CCCChHHHHHHHHHHHHhC-CcchhhcccCC-CCCHHHHHHHHHHHh
Q 018154 68 GRFAFEEEETIIQLHSILG-NKWSAIAARLP-GRTDNEIKNYWNTHI 112 (360)
Q Consensus 68 g~WT~EEDe~Llelv~~~G-~kWs~IA~~Lp-GRT~~qcKnRW~~lL 112 (360)
+.|+.-|=..++.++.+|| ++-..||..|. |+|...|+.+.....
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4699999999999999999 66899999997 999999996554444
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=41.33 E-value=26 Score=28.95 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCC--------cchhhcccCCCCC----HHHHHHHHHHHhhH
Q 018154 76 ETIIQLHSILGN--------KWSAIAARLPGRT----DNEIKNYWNTHIRK 114 (360)
Q Consensus 76 e~Llelv~~~G~--------kWs~IA~~LpGRT----~~qcKnRW~~lLkk 114 (360)
-+|..+|.++|+ .|.+||..|.--+ ...+|..|.++|-+
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 457888888883 6999999884322 46889999998855
No 107
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=41.04 E-value=17 Score=26.01 Aligned_cols=41 Identities=12% Similarity=0.219 Sum_probs=30.1
Q ss_pred HHHHHHHHHHH----HhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 73 EEEETIIQLHS----ILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 73 EEDe~Llelv~----~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
+.+..++.++. ..|-.+.+||..+ |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555554 2467899999999 89999999888777643
No 108
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=40.09 E-value=78 Score=25.98 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccc------cCCCCc----cCCCChHHHHHHHHHHH
Q 018154 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY------LRPDIK----RGRFAFEEEETIIQLHS 83 (360)
Q Consensus 14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~------L~p~lk----kg~WT~EEDe~Llelv~ 83 (360)
..+.|.++-..++.++. .| .....||+.++ .+...+ .||.+. +.+... ....+.++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34789999888888884 56 57789999887 333333 334332 222211 23478888888888876
Q ss_pred Hh
Q 018154 84 IL 85 (360)
Q Consensus 84 ~~ 85 (360)
+.
T Consensus 98 ~~ 99 (159)
T 2k27_A 98 QN 99 (159)
T ss_dssp HC
T ss_pred HC
Confidence 54
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.67 E-value=27 Score=28.79 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCC--------cchhhcccCCCC--C--HHHHHHHHHHHhhH
Q 018154 76 ETIIQLHSILGN--------KWSAIAARLPGR--T--DNEIKNYWNTHIRK 114 (360)
Q Consensus 76 e~Llelv~~~G~--------kWs~IA~~LpGR--T--~~qcKnRW~~lLkk 114 (360)
-+|..+|.++|+ .|.+||..|.-. + ...+|..|.++|-+
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 457888888883 699999988332 1 36889999988855
No 110
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=36.67 E-value=7.1 Score=32.64 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=38.1
Q ss_pred HHHHHHHhC-------CCCceecccccCCCCcc----cccccccccccCCCCccCCCChHHHHHHHHHHH
Q 018154 25 LIDYIQKHG-------YGNWRTLPKNAGLQRCG----KSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHS 83 (360)
Q Consensus 25 L~~lV~k~G-------~~nW~~IAk~l~~~Rt~----kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~ 83 (360)
|..+|.+.| .+.|..||..|+...+. ...|..|.++|.|- ..++++|-..|.+-|.
T Consensus 47 Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 47 FFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 445555554 13599999999765433 45677888888653 3478888888877664
No 111
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=34.66 E-value=30 Score=26.13 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 73 EEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 73 EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
+.+..++.++...|-.-.+||..| |-+...|+.+....++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 345556666666788899999999 8888888887766653
No 112
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=32.68 E-value=52 Score=27.07 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=24.7
Q ss_pred HHhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 83 SILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 83 ~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
...|-...+||..+ |-+...|+.+....+++
T Consensus 148 ~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 148 FFGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34467799999999 88889999888777644
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=31.35 E-value=19 Score=28.14 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=27.2
Q ss_pred HHHHHHHHhC--------CcchhhcccCCCC---C-HHHHHHHHHHHhhH
Q 018154 77 TIIQLHSILG--------NKWSAIAARLPGR---T-DNEIKNYWNTHIRK 114 (360)
Q Consensus 77 ~Llelv~~~G--------~kWs~IA~~LpGR---T-~~qcKnRW~~lLkk 114 (360)
+|..+|.+.| +.|.+||..|.-- + ...+|..|.++|-+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4777888777 4699999987321 2 46788888877754
No 114
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=31.27 E-value=46 Score=27.47 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCC--------cchhhcccCCC--C---CHHHHHHHHHHHhhH
Q 018154 74 EEETIIQLHSILGN--------KWSAIAARLPG--R---TDNEIKNYWNTHIRK 114 (360)
Q Consensus 74 EDe~Llelv~~~G~--------kWs~IA~~LpG--R---T~~qcKnRW~~lLkk 114 (360)
+--+|..+|.++|+ .|.+||..|.- . ....+|..|..+|-+
T Consensus 53 DL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 53 DLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 34568888888884 69999998832 2 257889999999865
No 115
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=30.86 E-value=24 Score=29.27 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=30.5
Q ss_pred HHHHHHHHhCC--------cchhhcccCCCCCHHHHHHHHHHHhhHH
Q 018154 77 TIIQLHSILGN--------KWSAIAARLPGRTDNEIKNYWNTHIRKR 115 (360)
Q Consensus 77 ~Llelv~~~G~--------kWs~IA~~LpGRT~~qcKnRW~~lLkk~ 115 (360)
+|..+|.+.|+ .|.+||..|.--....+|..|.++|-+-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 46777777773 5999999885445899999999998664
No 116
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=29.53 E-value=44 Score=28.37 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCC--------cchhhcccCCC--C---CHHHHHHHHHHHhhH
Q 018154 76 ETIIQLHSILGN--------KWSAIAARLPG--R---TDNEIKNYWNTHIRK 114 (360)
Q Consensus 76 e~Llelv~~~G~--------kWs~IA~~LpG--R---T~~qcKnRW~~lLkk 114 (360)
.+|..+|.+.|+ .|.+||..|.- . ....+|..|..+|-+
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 468888888883 69999998832 1 257889999998855
No 117
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=29.13 E-value=26 Score=29.48 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhHHHhh
Q 018154 73 EEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLLR 118 (360)
Q Consensus 73 EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k 118 (360)
+-|.+|+++..+-| -.|.+||+.+ |-+...|+.|++.+.+..+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56788888887766 5799999999 999999999997776555433
No 118
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.48 E-value=6.9 Score=32.10 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=28.8
Q ss_pred HHHHHHHHhC-------CCCceecccccCCCCcccccccccccccCC
Q 018154 24 KLIDYIQKHG-------YGNWRTLPKNAGLQRCGKSCRLRWTNYLRP 63 (360)
Q Consensus 24 ~L~~lV~k~G-------~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p 63 (360)
+|..+|.+.| .+.|..||..++... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 5777888776 236999999998544 67777777777753
No 119
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=27.77 E-value=60 Score=23.21 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 70 FAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 70 WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
+++.|-+.| .++ ..|-.-.+||..+ |-+...|+.+....++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455554444 444 5678899999999 8899999987776654
No 120
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=26.97 E-value=46 Score=29.50 Aligned_cols=26 Identities=12% Similarity=0.302 Sum_probs=17.9
Q ss_pred ccccccccC-CCCccCCCChHHHHHHH
Q 018154 54 RLRWTNYLR-PDIKRGRFAFEEEETII 79 (360)
Q Consensus 54 R~RW~n~L~-p~lkkg~WT~EEDe~Ll 79 (360)
-..|..-.. |.-..|-||.|+|+.|.
T Consensus 100 L~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 100 LNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 334443333 45678899999999987
No 121
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=26.62 E-value=58 Score=26.03 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHH
Q 018154 71 AFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIK 105 (360)
Q Consensus 71 T~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcK 105 (360)
+..-+..|..+....|..|..+|+.| |=+..+|.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 56677888888899999999999999 66665554
No 122
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=26.49 E-value=58 Score=26.94 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=23.6
Q ss_pred HhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 84 ILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 84 ~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
..|-...+||..+ |-+...|+.+....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467789999999 88999998887766643
No 123
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.02 E-value=85 Score=25.34 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCceecccccCCCCcccccccccccc------cCCCCc----cCCCChHHHHHHHHHHH
Q 018154 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY------LRPDIK----RGRFAFEEEETIIQLHS 83 (360)
Q Consensus 14 Kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~------L~p~lk----kg~WT~EEDe~Llelv~ 83 (360)
..+.+.|+-..++.++. .| .....||+.++ .+...+ .||.+. +.+... ....+.++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 35789999988888884 56 57788999887 333333 344322 222222 23478888888888876
Q ss_pred Hh
Q 018154 84 IL 85 (360)
Q Consensus 84 ~~ 85 (360)
..
T Consensus 105 ~~ 106 (149)
T 1k78_A 105 QN 106 (149)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 124
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=25.99 E-value=27 Score=27.91 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhC--------CcchhhcccCCC--C---CHHHHHHHHHHHhhH
Q 018154 75 EETIIQLHSILG--------NKWSAIAARLPG--R---TDNEIKNYWNTHIRK 114 (360)
Q Consensus 75 De~Llelv~~~G--------~kWs~IA~~LpG--R---T~~qcKnRW~~lLkk 114 (360)
--+|..+|.++| +.|.+||..|.- . ....+|..|..+|-+
T Consensus 35 L~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 35 LWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 345788888888 369999998842 1 236789989888744
No 125
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=25.16 E-value=55 Score=27.15 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=50.4
Q ss_pred CCcCCCCHHHH--HHHHHHHHHhCCCCceecccccCCCCcccccccccccccCCCCccCCCChHHHHHHHHHHHHhCC--
Q 018154 12 LKKGPWTPEED--QKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFAFEEEETIIQLHSILGN-- 87 (360)
Q Consensus 12 lkKg~WT~EED--e~L~~lV~k~G~~nW~~IAk~l~~~Rt~kqCR~RW~n~L~p~lkkg~WT~EEDe~Llelv~~~G~-- 87 (360)
.=+.+|.+.+. +.|.++..+.| .....++.. + +|.- +--+|..+|.++|+
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rG-tpl~~~P~i-~-gk~l-----------------------DL~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQG-ITMDELPLI-G-GCEL-----------------------DLACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTT-CCCSSCCEE-T-TEEC-----------------------CHHHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcC-CCCCCCCcC-C-CEec-----------------------cHHHHHHHHHHcCcHH
Confidence 34578987776 45777777778 334444332 2 1211 23458888888884
Q ss_pred ------cchhhcccCC--CC---CHHHHHHHHHHHhhHH
Q 018154 88 ------KWSAIAARLP--GR---TDNEIKNYWNTHIRKR 115 (360)
Q Consensus 88 ------kWs~IA~~Lp--GR---T~~qcKnRW~~lLkk~ 115 (360)
.|.+||..|. .. ....+|..|..+|-+-
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 6999999883 21 2468899998888553
No 126
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.00 E-value=58 Score=24.40 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHH----hCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 73 EEEETIIQLHSI----LGNKWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 73 EEDe~Llelv~~----~G~kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
+.+..++.+... .|-.+.+||..+ |-+...|+.+-...++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALR 64 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 344555555554 467899999999 8999999987766654
No 127
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.58 E-value=60 Score=22.77 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 68 GRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 68 g~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
..+|+.|-+.|.. + ..|..-.+||..+ |-+...|+.+....++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3466666655554 4 5678899999999 8899999988876654
No 128
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=24.55 E-value=69 Score=24.47 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 69 RFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 69 ~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
..|+.|-+.|. ++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45666655554 45 7788899999999 88999999888776643
No 129
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.45 E-value=92 Score=21.09 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 75 EETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 75 De~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
+..++.+ ...|-.-.+||..+ |-+...++.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455566 46688889999999 88999999888776643
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.35 E-value=87 Score=23.94 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=34.3
Q ss_pred cCCCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 67 RGRFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 67 kg~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+....+++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4467877777665544 788899999999 89999999988777643
No 131
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.12 E-value=74 Score=23.60 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhH
Q 018154 69 RFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRK 114 (360)
Q Consensus 69 ~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk 114 (360)
..|+.|-+.|.- + ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655544 4 5788899999999 88999999887766543
No 132
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=21.36 E-value=1.1e+02 Score=23.27 Aligned_cols=35 Identities=11% Similarity=-0.049 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHH
Q 018154 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNY 107 (360)
Q Consensus 72 ~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnR 107 (360)
.-|...|.++...+|++.++.|+.| |=+...+..|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888899999999999999998 6666655544
No 133
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.31 E-value=1e+02 Score=25.10 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhC-CcchhhcccCCCCCHHHHHHHHHHHhhHHHh
Q 018154 73 EEEETIIQLHSILG-NKWSAIAARLPGRTDNEIKNYWNTHIRKRLL 117 (360)
Q Consensus 73 EEDe~Llelv~~~G-~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~ 117 (360)
+-|..|+.+....| -.+.+||+.+ |-+...|+.|++.+.+..+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 45667777777766 5799999999 88999999999887755543
No 134
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=21.11 E-value=85 Score=22.23 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhhHHHhhCCCCC
Q 018154 72 FEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDP 123 (360)
Q Consensus 72 ~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLkk~l~k~g~~p 123 (360)
.-|.+.|.++...+|+++++.|+.| |=+...+. .++++.|+.+
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~--------rklkk~gi~~ 60 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLY--------RKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHH--------HHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHH--------HHHHHhCCCC
Confidence 3577788899999999999999988 55554333 3445555543
No 135
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=20.92 E-value=66 Score=26.28 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCcchhhcccCCCCCHHHHH
Q 018154 77 TIIQLHSILGNKWSAIAARLPGRTDNEIK 105 (360)
Q Consensus 77 ~Llelv~~~G~kWs~IA~~LpGRT~~qcK 105 (360)
.|..++...|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 56666788999999999998 66655543
No 136
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.84 E-value=92 Score=24.81 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 73 EEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 73 EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
+.+..++.++...|-...+||..+ |-+...|+.+....++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344556666667788899999999 8898888877766553
No 137
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=20.55 E-value=84 Score=23.56 Aligned_cols=42 Identities=19% Similarity=0.102 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHHHhCCcchhhcccCCCCCHHHHHHHHHHHhh
Q 018154 69 RFAFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIR 113 (360)
Q Consensus 69 ~WT~EEDe~Llelv~~~G~kWs~IA~~LpGRT~~qcKnRW~~lLk 113 (360)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILS 70 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 45666655554 44 6788899999999 8899999988776654
No 138
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=20.21 E-value=63 Score=26.36 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCcchhhcccCCCCCHHHHH
Q 018154 77 TIIQLHSILGNKWSAIAARLPGRTDNEIK 105 (360)
Q Consensus 77 ~Llelv~~~G~kWs~IA~~LpGRT~~qcK 105 (360)
.|..++...|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 56666788999999999998 66665543
Done!