BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018156
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/357 (61%), Positives = 270/357 (75%), Gaps = 27/357 (7%)
Query: 31 YGHQPTFRNSNENKKHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGK 90
+ HQ ++S+ ++ LDPFSLV DELSL+S +LR MV+AEVP+LASAA YFFK GV+GK
Sbjct: 66 FSHQLYHQSSSLVEEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGK 125
Query: 91 KLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLD 150
+ T++LLMATALNV PE + + +LR RQ+ IAEITEMIHVASL+HDDVLD
Sbjct: 126 QFRSTILLLMATALNVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLD 185
Query: 151 DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---------------- 194
DADTRRG+GSL+ VMGNK+++LAGD L+SRA ALA+LK+TEV+
Sbjct: 186 DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETM 245
Query: 195 -----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQ 243
M+ YMQKTY KTA+L+SNSCKAVA L+GQ EVA LAFEYG+NLGLA+Q
Sbjct: 246 EITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQ 305
Query: 244 LIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVIL 303
LIDDILDFTGTSASLGK SL+D+R+G+ITAPILFAMEEFPQLR ++ +P NVD+ L
Sbjct: 306 LIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIAL 365
Query: 304 EYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360
EYLGKS GIQR ELA++HA+LAAAAI SLPET + D +R AL+ +T ++ITRNK
Sbjct: 366 EYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 422
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/367 (56%), Positives = 261/367 (71%), Gaps = 30/367 (8%)
Query: 21 SCRWILSHRRYGHQPTFRNSNENKKHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAG 80
S RW+ + Q S E + DPF LV DELSL++ RLRSMV AEVP+LASAA
Sbjct: 67 SSRWLHDAQYQVRQDGLSRSEEQQ---DPFELVADELSLLANRLRSMVAAEVPKLASAAE 123
Query: 81 YFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHV 140
YFFK G EGK+ PTV+LLMA+AL + + + L LR RQQ IAEITEMIHV
Sbjct: 124 YFFKVGAEGKRFRPTVLLLMASALKFPLSDSTEVGVLTILANKLRTRQQNIAEITEMIHV 183
Query: 141 ASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI------ 194
ASL+HDDVLDDADTRRG+ SL+ +MGNKL++LAGD L+SRA VALA+L +TEV+
Sbjct: 184 ASLLHDDVLDDADTRRGVSSLNCIMGNKLSVLAGDFLLSRACVALAALGNTEVVSLMATA 243
Query: 195 ---------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFE 233
M+ Y+QKTY KTA+L+SNSCKAVA L+G +V+ LA+E
Sbjct: 244 VEHLVTGETMQISTSREQRRSMDYYLQKTYYKTASLISNSCKAVAILAGHTADVSMLAYE 303
Query: 234 YGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSS 293
YG+NLGLA+QLIDD+LDFTGTSASLGK SLTD+R+GIITAP+L+AMEEFPQL ++
Sbjct: 304 YGRNLGLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPMLYAMEEFPQLHEVVDRGF 363
Query: 294 DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQ 353
DNPANV++ L+YL KS GI++T ELA +HA+ A AI++LP++ D D +R AL+ IT+
Sbjct: 364 DNPANVELALDYLQKSRGIEKTKELAREHANRAIKAIEALPDSDDEDVLTSRRALIDITE 423
Query: 354 KIITRNK 360
++ITR K
Sbjct: 424 RVITRTK 430
>sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1
PE=1 SV=1
Length = 409
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 47/361 (13%)
Query: 28 HRRYGHQPTFRNSNENKKHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGV 87
H+R + R + +K+ DPF L +L + +R + EL + Y+F +G
Sbjct: 68 HQRTPAMCSCRQTQSGEKYSDPFKLGWRDLKGLYEDIRKELHISTRELKDMSEYYF-DG- 125
Query: 88 EGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDD 147
+GK P +++LMA A N+ + +++ Q+ IA + EMIH A+L+HDD
Sbjct: 126 KGKAFRPIIVVLMARACNI----------HHNNAREMQASQRSIALVAEMIHTATLVHDD 175
Query: 148 VLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI------------- 194
V+DDA +RRG +++ + G K A+LAGDL++S A VALA + +T V+
Sbjct: 176 VIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASVALARIGNTAVVSMLAQVIEDLVRG 235
Query: 195 --------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGL 240
Y++KT+ KTA+L++NSCKAV+ L V +A++YGKN+G+
Sbjct: 236 EFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGI 295
Query: 241 AYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVD 300
A+QLIDD+LDFT S +GK + DL+ GI T P+LFA ++FP++ A I P +VD
Sbjct: 296 AFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFACQQFPEMNAMIMRRFSLPGDVD 355
Query: 301 VILEYLGKSHGIQRTTELALKHASLAAAAIDSL-PETHDVDATNARTALVHITQKIITRN 359
+Y+ +S G+Q+TT LA ++ A I L P T R AL+ +++ ++TR+
Sbjct: 356 RARQYVLQSDGVQQTTYLAQQYCHKAVREIRKLRPSTE-------RDALIQLSESVLTRD 408
Query: 360 K 360
K
Sbjct: 409 K 409
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1
PE=1 SV=1
Length = 415
Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/358 (34%), Positives = 199/358 (55%), Gaps = 45/358 (12%)
Query: 30 RYGHQPTFRNSNENKKHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEG 89
R+ H ++ +K+ DPF L +L + +R ++ EL + Y+F +G +G
Sbjct: 76 RFHHTTPDSKTHSGEKYTDPFKLGWRDLKGLYEDIRKELLISTSELKEMSEYYF-DG-KG 133
Query: 90 KKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVL 149
K P ++ LMA A N+ + ++ Q+ IA I EMIH ASL+HDDV+
Sbjct: 134 KAFRPIIVALMARACNI----------HHNNSRHVQASQRAIALIAEMIHTASLVHDDVI 183
Query: 150 DDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI--------------- 194
DDA +RRG +++ + G K A+LAGDL++S A +ALA + +T VI
Sbjct: 184 DDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEF 243
Query: 195 ------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAY 242
Y++KT+ KTA+L++NSCKAV+ L V +A++YGKN+G+A+
Sbjct: 244 LQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAF 303
Query: 243 QLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVI 302
QLIDD+LDFT S +GK + DL+ G+ T P+LFA ++FP++ A I P +VD
Sbjct: 304 QLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDVDRA 363
Query: 303 LEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360
+Y+ +S G+Q+TT LA ++ A I L + + R AL+ +++ ++TR+K
Sbjct: 364 RQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPE------RDALIQLSEIVLTRDK 415
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 211 bits (537), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 207/396 (52%), Gaps = 94/396 (23%)
Query: 48 DPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVC 107
DPFS+V E+S ++ + S++ + P L A Y+F+ EGK + P ++LL++ AL+
Sbjct: 68 DPFSIVSQEMSTLANNIGSLIGSGHPTLNKVATYYFQS--EGKHVRPLIVLLLSRALSAI 125
Query: 108 ----------------------TPE---------------LSPNVLGNTL---------- 120
PE ++P+++ N L
Sbjct: 126 PESERDRGTFDASDVTENVGELNPEPSINDPLSPIEILHGINPDIVLNPLSRPSDPLPYE 185
Query: 121 ---ILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLL 177
IL +RR +AEI EMIH ASL+HDDV+D++ TRRG + + GNK+AILAGD L
Sbjct: 186 SNGILPKQRR---LAEIVEMIHTASLLHDDVIDNSATRRGSPTGNVAFGNKMAILAGDFL 242
Query: 178 ISRALVALASLKHTEVI---------------------------------MECYMQKTYN 204
+ RA VA+A L++ EVI E Y+ KTY
Sbjct: 243 LGRASVAIARLRNAEVIELLSTTIANLVEGEFMQLKNTIVDNSEIANKATFEYYIHKTYL 302
Query: 205 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLT 264
KTA+L+S SC+A A LSG R + ++++GKNLGL +Q++DD+LD++ + LGK +
Sbjct: 303 KTASLMSKSCRAAAVLSGARNPIVDASYKFGKNLGLCFQVVDDMLDYSEGESHLGKPAGA 362
Query: 265 DLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHAS 324
DL+ G+ TAP+LFA E++P+L I D P +V+ + ++ G+ RT ELA K+
Sbjct: 363 DLKLGLATAPVLFAWEKYPELGDMIKRKFDGPGDVERARFLVQQADGLSRTRELAQKYCD 422
Query: 325 LAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360
A A +D LP + +R AL ++T K++ R+K
Sbjct: 423 EAVANLDLLPYSE------SREALRNLTMKMMNRSK 452
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 132/380 (34%), Positives = 196/380 (51%), Gaps = 77/380 (20%)
Query: 47 LDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNV 106
+DP LV E+ ++ +R ++ + P L AA Y+ + EGK + P ++LLM+ A +
Sbjct: 81 IDPLRLVAGEMKFLTGNIRKLLGSGHPSLDRAAKYYTQ--AEGKHVRPLIVLLMSRATAL 138
Query: 107 C--TPE---------------LSP-NVL--------------GNTLILDLRRRQQCIAEI 134
C P+ +SP N+L +T IL +RR +AEI
Sbjct: 139 CPKAPQRQQSTLQASAAIDTSISPLNILSDFNPSDATPVSIPADTDILPSQRR---LAEI 195
Query: 135 TEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI 194
TE+IH ASL+HDDV+D +++RRG S + GNK+A+LAGD L+ RA VALA L+H EV+
Sbjct: 196 TELIHTASLLHDDVIDHSESRRGAPSANLEFGNKMAVLAGDFLLGRASVALARLRHAEVV 255
Query: 195 ----------------------------------MECYMQKTYNKTAALVSNSCKAVAYL 220
+ Y+QKTY KTA+L+S SC+A A L
Sbjct: 256 ELLATVIANLVEGEFMQLKNTARDEKNPKWSEETLTYYLQKTYLKTASLISKSCRASALL 315
Query: 221 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME 280
G A+ YGKNLGLA+QL+DD+LD+T + LGK + DL G+ TAP+LFA +
Sbjct: 316 GGADAATVDAAYLYGKNLGLAFQLVDDMLDYTRSEKELGKPAGADLELGLATAPLLFAWK 375
Query: 281 EFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVD 340
P+L + + + E + +S+GI++T LA +A A AI P++
Sbjct: 376 TMPELGPLVGRKFEKEGDAARARELVLQSNGIEQTRALAQDYAEKAIEAISGFPDSE--- 432
Query: 341 ATNARTALVHITQKIITRNK 360
A+ L+ + K + RNK
Sbjct: 433 ---AKDGLIEMAVKTLKRNK 449
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 184/314 (58%), Gaps = 51/314 (16%)
Query: 73 PELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIA 132
P L+S + Y+F+ ++GK++ PT++LL++ AL S V G+ L L A
Sbjct: 168 PILSSISSYYFE--LKGKRIRPTIVLLLSKAL-------SSTVHGSQLKL---------A 209
Query: 133 EITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTE 192
EI EMIH ASL+HDDV+D+A TRR + S++ NKLAIL GD L++RA V L+++++ +
Sbjct: 210 EIVEMIHTASLVHDDVIDEASTRRDVISINHSYTNKLAILCGDYLLARASVVLSTIRNPD 269
Query: 193 VIMEC--------------------------YMQKTYNKTAALVSNSCKAVAYLSGQREE 226
V EC Y+QKTY KT +L++NSC++ A LSG
Sbjct: 270 V-TECMSTALAELVEGEFMQAKSNGVVSFDNYLQKTYLKTGSLITNSCRSAAILSGADSN 328
Query: 227 VATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 286
+ ++ E+GKNLGLA+Q++DD+LD+TG++ GKA+ DL G+ TAP+L+A +EFPQL
Sbjct: 329 IINISTEFGKNLGLAFQIVDDLLDYTGSAEECGKATSVDLTLGLATAPVLYATQEFPQLE 388
Query: 287 AFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNART 346
I +V+ + S GI++T LA+++ + A ++ LP++ +R
Sbjct: 389 KLIKRKFSEIGDVEEAKRLVALSKGIEKTRNLAIEYCNRAIQSLLKLPQSE------SRD 442
Query: 347 ALVHITQKIITRNK 360
L+ ++ ++TR K
Sbjct: 443 LLITLSHIVVTRTK 456
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 176/304 (57%), Gaps = 43/304 (14%)
Query: 50 FSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTP 109
F+ V +L L++ L+ +V A P L +AA + F+ G GK++ P ++LL++ A
Sbjct: 8 FAPVDQDLRLLTDNLKRLVGARHPILGAAAEHLFEAG--GKRVRPAIVLLVSRA------ 59
Query: 110 ELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKL 169
L +L R + +AEITEMIH ASL+HDDV+D+AD RR + +++S+ N++
Sbjct: 60 --------TLLDQELTARHRRLAEITEMIHTASLVHDDVVDEADLRRNVPTVNSLFDNRV 111
Query: 170 AILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKT 202
A+LAGD L +++ LA+L + EV+ +E Y++K+
Sbjct: 112 AVLAGDFLFAQSSWYLANLDNLEVVKLLSEVIRDFAEGEILQSINRFDTDTDLETYLEKS 171
Query: 203 YNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKAS 262
Y KTA+L++NS KA LS +V +EYGK+LGLA+Q++DDILDFT + LGK +
Sbjct: 172 YFKTASLIANSAKAAGVLSDAPRDVCDHLYEYGKHLGLAFQIVDDILDFTSPTEVLGKPA 231
Query: 263 LTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKH 322
+DL +G ITAP LFAME++P L I +++ LE + + GI+R+ ELA
Sbjct: 232 GSDLISGNITAPALFAMEKYPLLGKLIEREFAQAGDLEQALELVEQGDGIRRSRELAANQ 291
Query: 323 ASLA 326
A LA
Sbjct: 292 AQLA 295
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 192 bits (487), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 179/314 (57%), Gaps = 40/314 (12%)
Query: 50 FSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTP 109
F +V D+L ++ L S+V AE P L SAA F G GK++ P ++ L++ A T
Sbjct: 99 FEVVADDLQRLNDNLLSIVGAENPVLISAAEQIFSAG--GKRMRPGLVFLVSRA----TA 152
Query: 110 ELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKL 169
EL+ L ++ RR + EI EMIH ASLIHDDVLD++D RRG ++ + G ++
Sbjct: 153 ELAGL---KELTVEHRR----LGEIIEMIHTASLIHDDVLDESDMRRGRETVHELFGTRV 205
Query: 170 AILAGDLLISRALVALASLKHTEVI---------------------MEC------YMQKT 202
A+LAGD + ++A LA+L++ EVI +C YM K+
Sbjct: 206 AVLAGDFMFAQASWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDVKLDDYMLKS 265
Query: 203 YNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKAS 262
Y KTA+LV+ S K A S +VA +++GKNLGL++Q++DDILDFT ++ LGK +
Sbjct: 266 YYKTASLVAASTKGAAIFSKVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLGKPA 325
Query: 263 LTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKH 322
DL G ITAP++FA+E P+LR I S P +++ +E + GI++ ELA +
Sbjct: 326 ANDLAKGNITAPVIFALENEPRLREIIESEFCEPGSLEEAIEIVRNRGGIKKAQELAKEK 385
Query: 323 ASLAAAAIDSLPET 336
A LA ++ LP +
Sbjct: 386 AELALKNLNCLPRS 399
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 191 bits (485), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 181/315 (57%), Gaps = 40/315 (12%)
Query: 50 FSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTP 109
+V D+L ++ L+S+V AE P L SAA F G GK+L P ++ L++ A T
Sbjct: 54 LEVVADDLLKLNNNLKSLVGAENPVLVSAAEQIFGAG--GKRLRPALVFLVSRA----TA 107
Query: 110 ELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKL 169
EL+ +L+L Q +AEI EMIH ASLIHDDV+DD+ RRG ++ + G ++
Sbjct: 108 ELAG-------LLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRV 160
Query: 170 AILAGDLLISRALVALASLKHTEVI---------------------MEC------YMQKT 202
A+LAGD + +++ LA+L++ EVI +C Y+ K+
Sbjct: 161 AVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKS 220
Query: 203 YNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKAS 262
Y KTA+L++ S ++ A SG + +EYG+NLGL++Q++DDILDFT ++ LGK +
Sbjct: 221 YYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPA 280
Query: 263 LTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKH 322
+DL G +TAP++FA+++ PQLR I+S ++ +E + +S GI+R ELA +
Sbjct: 281 GSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREK 340
Query: 323 ASLAAAAIDSLPETH 337
+A ++ LP +
Sbjct: 341 GEIAIQSLQCLPRSE 355
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 189 bits (480), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 182/313 (58%), Gaps = 40/313 (12%)
Query: 52 LVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPEL 111
+V D+L ++ L+S+V AE P L SAA F G GK+L P ++ L++ A T EL
Sbjct: 87 VVSDDLLKLNNNLKSLVGAENPVLVSAAEQIF--GAGGKRLRPALVFLVSRA----TAEL 140
Query: 112 SPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAI 171
+ +L+L Q +AEI EMIH ASLIHDDV+DD+ RRG ++ + G ++A+
Sbjct: 141 AG-------LLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAV 193
Query: 172 LAGDLLISRALVALASLKHTEVI---------------------MEC------YMQKTYN 204
LAGD + +++ LA+L++ EVI +C Y+ K+Y
Sbjct: 194 LAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYY 253
Query: 205 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLT 264
KTA+L+++S ++ A SG + +EYG+NLGL++Q++DDILDFT ++ LGK + +
Sbjct: 254 KTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGS 313
Query: 265 DLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHAS 324
DL G +TAP++FA+++ P+LR I+S ++ ++ + +S GI+R ELA +
Sbjct: 314 DLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGD 373
Query: 325 LAAAAIDSLPETH 337
LA + LP++
Sbjct: 374 LALQNLQCLPKSQ 386
>sp|O43091|DPS1_SCHPO Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 378
Score = 184 bits (467), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 198/367 (53%), Gaps = 57/367 (15%)
Query: 37 FRNSNENKKHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTV 96
F +N N HL + +EL IS +R M+ + L + Y+ +GK++ P++
Sbjct: 26 FSTTNRNASHL-----IKNELEQISPGIRQMLNSNSEFLEECSKYY--TIAQGKQMRPSL 78
Query: 97 ILLMATALNVCTPELSPNVLGNTLILDLRRR----------QQCIAEITEMIHVASLIHD 146
+LLM+ A ++C + +V+G+ I D R Q +A+ITEMIH+ASL+HD
Sbjct: 79 VLLMSKATSLCHG-IDRSVVGDKYIDDDDLRSFSTGQILPSQLRLAQITEMIHIASLLHD 137
Query: 147 DVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI------------ 194
DV+D A+ RRG S + GN+ +ILAG+ +++RA A+A L++ +V
Sbjct: 138 DVIDHANVRRGSPSSNVAFGNRRSILAGNFILARASTAMARLRNPQVTELLATVIADLVR 197
Query: 195 ---------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFE 233
+ Y++K++ KTA+L+S SCKA L VAT A E
Sbjct: 198 GEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLISKSCKASTILGQCSPTVATAAGE 257
Query: 234 YGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSS 293
YG+ +G A+QL+DD+LD+T +LGKA+ DL+ G+ TAP+LFA +++P+L A I +
Sbjct: 258 YGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNRF 317
Query: 294 DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQ 353
++P+++ + + I++T A ++ A ++ LP++ AR AL +
Sbjct: 318 NHPSDIQRARSLVECTDAIEQTITWAKEYIKKAKDSLLCLPDSP------ARKALFALAD 371
Query: 354 KIITRNK 360
K+ITR K
Sbjct: 372 KVITRKK 378
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 176/314 (56%), Gaps = 40/314 (12%)
Query: 50 FSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTP 109
F LV +L ++ L S+V AE P L SAA F G GK++ P ++ L++ A T
Sbjct: 88 FELVAVDLQTLNDNLLSIVGAENPVLISAAEQIF--GAGGKRMRPGLVFLVSHA----TA 141
Query: 110 ELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKL 169
EL+ + +L + +AEI EMIH ASLIHDDVLD++D RRG ++ + G ++
Sbjct: 142 ELAG-------LKELTTEHRRLAEIIEMIHTASLIHDDVLDESDMRRGKETVHELFGTRV 194
Query: 170 AILAGDLLISRALVALASLKHTEVI---------------------MEC------YMQKT 202
A+LAGD + ++A LA+L++ EVI +C Y+ K+
Sbjct: 195 AVLAGDFMFAQASWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDTKLDEYLLKS 254
Query: 203 YNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKAS 262
+ KTA+LV+ S K A S +V +E+GKNLGL++Q++DDILDFT ++ LGK +
Sbjct: 255 FYKTASLVAASTKGAAIFSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPA 314
Query: 263 LTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKH 322
+DL G +TAP++FA+E P+LR I S +++ +E + K GI+R ELA +
Sbjct: 315 GSDLAKGNLTAPVIFALEREPRLREIIESEFCEAGSLEEAIEAVTKGGGIKRAQELAREK 374
Query: 323 ASLAAAAIDSLPET 336
A A + LP +
Sbjct: 375 ADDAIKNLQCLPRS 388
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 193/333 (57%), Gaps = 49/333 (14%)
Query: 53 VGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELS 112
V +EL L++ L+ +V + P L++A+ + F GK+ P ++LL++ A
Sbjct: 11 VENELDLLTKNLKKLVGSGHPILSAASEHLF--SASGKRPRPAIVLLISKA--------- 59
Query: 113 PNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAIL 172
+ N +I RR +AEITE+IH ASL+HDD+LD++D RRGI ++ S G K+AIL
Sbjct: 60 --TMENEIITSRHRR---LAEITEIIHTASLVHDDILDESDVRRGIPTVHSDFGTKIAIL 114
Query: 173 AGDLLISRALVALASLKHTEVI---------------------------MECYMQKTYNK 205
AGD L +++ LA+L+ EV+ +E Y++K++ K
Sbjct: 115 AGDFLFAQSSWYLANLESLEVVKLISKVITDFAEGEIRRGLNQFKVDLTLEEYLEKSFYK 174
Query: 206 TAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTD 265
TA+L++ S KA A LS VA + YG++LGLA+Q++DDILDFT ++ LGK S +D
Sbjct: 175 TASLLAASSKAAALLSHVDLTVANDLYNYGRHLGLAFQIVDDILDFTSSTEELGKPSCSD 234
Query: 266 LRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASL 325
L+ G +TAP+LFA+E+ +L I P + + L+ + ++ I++T ELA++HA +
Sbjct: 235 LKKGNLTAPVLFALEQNSELIPLIQRQFSEPKDFEYTLQIVEETKAIEKTRELAMEHAQV 294
Query: 326 AAAAIDSLPETHDVDATNARTALVHITQKIITR 358
A +++LP ++++ AL IT+ ++ R
Sbjct: 295 AIQCLENLP------PSSSKEALKLITKYVLER 321
>sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1
Length = 323
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 181/335 (54%), Gaps = 49/335 (14%)
Query: 53 VGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELS 112
V ++L I L ++ P L++AA + VE KK+ P ++LL+A A++
Sbjct: 11 VKEDLLNIEQTLNKLIKVNNPILSAAAKHLL--IVESKKIRPAIVLLVAKAIDKNKK--- 65
Query: 113 PNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAIL 172
++ QQ +AE+TE+IH A+L+HDDV+D++ RRG S++ GNK+A+
Sbjct: 66 -----------IKTSQQRLAEVTEIIHTATLLHDDVVDESIIRRGTKSVNKTFGNKIAVF 114
Query: 173 AGDLLISRALVALASLKHTEVIMEC---------------------------YMQKTYNK 205
AGD L +++ LA++ + EV+ Y++K++NK
Sbjct: 115 AGDFLFAQSSWYLANINNLEVVKAISKVITDLAEGELQQNLTQFNTYYSIIKYLEKSFNK 174
Query: 206 TAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTD 265
TA+L++ SCK+ LS + + + + YGKNLGLA+Q+IDDILD T +S +LGK + +D
Sbjct: 175 TASLIAASCKSCCLLSDFDQSLNSKFYNYGKNLGLAFQIIDDILDITSSSTALGKMTTSD 234
Query: 266 LRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASL 325
L+ G +TAP+LFA+ + +L I +++ + + +++ I+ + +LA +H
Sbjct: 235 LKLGNLTAPVLFALTKNSKLFKIIEREFCEKSDISEAINIIKETNAIEESFDLAYEHIEA 294
Query: 326 AAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360
A +I LP + + D +L+ I ++ R K
Sbjct: 295 AINSIKDLPTSSEKD------SLIEIAYDLLNRYK 323
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 182/336 (54%), Gaps = 49/336 (14%)
Query: 50 FSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTP 109
F V EL + L+++ P L +AA + F G GK++ P ++ L+A A T
Sbjct: 8 FYPVEQELCSLEKNLKAVAGTRHPILYAAAKHLFDAG--GKRVRPALVFLVAKA----TS 61
Query: 110 ELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKL 169
E D+ Q+ +AEITE+IH ASL+HDD++D+ TRRG+ ++ ++ K+
Sbjct: 62 EKQ----------DINTGQKRLAEITEIIHTASLVHDDIIDECTTRRGVKTVHNLFNTKI 111
Query: 170 AILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKT 202
A+LAGD L +++ LA++++ V+ ++ Y++K+
Sbjct: 112 AVLAGDFLFAQSSWYLANIENLAVVKAISKVITDFAEGEIRQGLVHFDPSISIDAYIEKS 171
Query: 203 YNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKAS 262
+ KTA+L++ SC+ A L+G ++ + YGK++GLA+Q++DD+LD TG++ SLGK +
Sbjct: 172 FYKTASLIAASCRGAAMLNGSNHQINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGKPA 231
Query: 263 LTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKH 322
DL NG +T+P+LF++ + L I+ N ++ L + +S GI + +LA +
Sbjct: 232 GADLINGNLTSPLLFSLTQEASLNDLIDREFCNSTDIASTLFLIKRSGGITKAKDLAKEQ 291
Query: 323 ASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 358
A + + LP++ V ++L +T IITR
Sbjct: 292 VQAALSCLQFLPQSTPV------SSLKELTHFIITR 321
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 167 bits (424), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 179/336 (53%), Gaps = 49/336 (14%)
Query: 50 FSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTP 109
F + EL + L+S+ P L +AA + F+ G GK+L P ++LL+A + +
Sbjct: 8 FHPIEKELYSVEHNLKSVAGTRHPILYAAAKHLFEAG--GKRLRPAIVLLVAKSTSE-QQ 64
Query: 110 ELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKL 169
E+ P Q+ +AEITE+IH ASL+HDDV+D+ TRRG ++ + K+
Sbjct: 65 EIKPG-------------QRRLAEITEIIHTASLVHDDVIDECSTRRGEKTVHKLFNTKI 111
Query: 170 AILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKT 202
A+LAGD L +++ LA++ + EV+ ++ Y++K+
Sbjct: 112 AVLAGDFLFAQSSWYLANIGNLEVVKVITKVITDFAEGEIRQGLVHFDPSISIDDYIEKS 171
Query: 203 YNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKAS 262
+ KTA+LV+ SC+ A L+ ++ + YGK++GLA+Q++DD+LD G++ SLGK S
Sbjct: 172 FYKTASLVAASCRGAAMLNDLNSQMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGKPS 231
Query: 263 LTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKH 322
D NG +TAPILFA+ + +L I + ++ + L + KS GI + +LA +
Sbjct: 232 GADFMNGNLTAPILFALTQEGKLDQLIQREFSDERDISLALFLIKKSGGITKAKDLAKEQ 291
Query: 323 ASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 358
A + LP++ V ++L +T IITR
Sbjct: 292 VQAALCCLQFLPKSAPV------SSLKELTHFIITR 321
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 158/314 (50%), Gaps = 49/314 (15%)
Query: 50 FSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTP 109
+S + D+L+ + L V +E L AA + + G GK++ P +LL A
Sbjct: 7 YSFLSDDLAAVEEELERAVQSEYGPLGEAALHLLQAG--GKRIRPVFVLLAAR------- 57
Query: 110 ELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKL 169
G DL R + +A E+IH+ASL+HDDV+DDAD RRG ++ + N+
Sbjct: 58 ------FGQ---YDLERMKH-VAVALELIHMASLVHDDVIDDADLRRGRPTIKAKWSNRF 107
Query: 170 AILAGDLLISRALVALASLKH-------TEVIMEC--------------------YMQKT 202
A+ GD L +R+L +A L + + I+E Y+++
Sbjct: 108 AMYTGDYLFARSLERMAELGNPRAHQVLAKTIVEVCRGEIEQIKDKYRFDQPLRTYLRRI 167
Query: 203 YNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKAS 262
KTA L++ SC+ A +G E + + +G +G+++Q+ DDILDFTGT LGK +
Sbjct: 168 RRKTALLIAASCQLGALAAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPA 227
Query: 263 LTDLRNGIITAPILFAMEEFPQLRAFINS--SSDNPANVDVILEYLGKSHGIQRTTELAL 320
+DL G +T P+L+A+ + +++A I + + A + ++ + ++ I+R+ L+
Sbjct: 228 GSDLLQGNVTLPVLYALSD-ERVKAAIAAVGPETDVAEMAAVISAIKRTDAIERSYALSD 286
Query: 321 KHASLAAAAIDSLP 334
++ A +D LP
Sbjct: 287 RYLDKALHLLDGLP 300
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 173/361 (47%), Gaps = 64/361 (17%)
Query: 35 PTFRNSNENK-------KHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGV 87
P + NEN K +S + D++ +I L V ++ P L+ A + + G
Sbjct: 13 PRISDGNENTDVWVNDMKFKMAYSFLNDDIDVIERELEQTVRSDYPLLSEAGLHLLQAG- 71
Query: 88 EGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDD 147
GK++ P +LL + G+ I + + +A EMIH+ASL+HDD
Sbjct: 72 -GKRIRPVFVLL-------------SGMFGDYDI----NKIKYVAVTLEMIHMASLVHDD 113
Query: 148 VLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH-------TEVIMEC--- 197
V+DDA+ RRG ++ + N++A+ GD +++ +L + + ++ I+E
Sbjct: 114 VIDDAELRRGKPTIKAKWDNRIAMYTGDYMLAGSLEMMTRINEPKAHRILSQTIVEVCLG 173
Query: 198 -----------------YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGL 240
Y+++ KTA L++ SC+ A SG E++ + +G +G+
Sbjct: 174 EIEQIKDKYNMEQNLRTYLRRIKRKTALLIAVSCQLGAIASGADEKIHKALYWFGYYVGM 233
Query: 241 AYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR---AFINSSSDNPA 297
+YQ+IDDILDFT T LGK DL G +T P+L+A++ P L+ INS +
Sbjct: 234 SYQIIDDILDFTSTEEELGKPVGGDLLQGNVTLPVLYALKN-PALKNQLKLINSET-TQE 291
Query: 298 NVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIIT 357
++ I+E + K+ I+ + ++ + A +++LP AR++L I + I
Sbjct: 292 QLEPIIEEIKKTDAIEASMAVSEMYLQKAFQKLNTLPRGR------ARSSLAAIAKYIGK 345
Query: 358 R 358
R
Sbjct: 346 R 346
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 117/214 (54%), Gaps = 11/214 (5%)
Query: 151 DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---MECYMQKTYNKTA 207
D DT L V KL + D + L L H ++I E Y+ KTY KTA
Sbjct: 267 DIDTIENGHKLLPVPSKKLEVKEHDFRVPSRQQGL-QLSHDQIIETAFEYYIHKTYLKTA 325
Query: 208 ALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLR 267
AL+S SC+ A LSG V +++G+NLG+ +QL+DD+LDFT + LGK S DL+
Sbjct: 326 ALISKSCRCAAILSGASPAVIDECYDFGRNLGICFQLVDDMLDFTVSGKDLGKPSGADLK 385
Query: 268 NGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAA 327
GI TAP+LFA +E P L I+ + +V+ ++ + +GI +T LA ++ A
Sbjct: 386 LGIATAPVLFAWKEDPSLGPLISRNFSERGDVEKTIDSVRLHNGIAKTKILAEEYRDKAL 445
Query: 328 AAI-DSLPETHDVDATNARTALVHITQKIITRNK 360
+ DSLPE ++AR+AL +T I+TR K
Sbjct: 446 QNLRDSLPE------SDARSALEFLTNSILTRRK 473
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 52/68 (76%)
Query: 127 RQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALA 186
+Q+ +AEI EMIH ASL+HDDV+D +DTRRG S ++ NK+A+LAGD L+ RA V+++
Sbjct: 174 KQRRLAEIVEMIHTASLLHDDVIDHSDTRRGRPSGNAAFTNKMAVLAGDFLLGRATVSIS 233
Query: 187 SLKHTEVI 194
L + EV+
Sbjct: 234 RLHNPEVV 241
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 147/319 (46%), Gaps = 57/319 (17%)
Query: 74 ELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAE 133
+L + GY+ G GK++ P + +L A A+ GN + IA
Sbjct: 30 QLINQLGYYIVSG-GGKRIRPMIAVLAARAVGYE---------GNAHV--------TIAA 71
Query: 134 ITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA---LVALASLKH 190
+ E IH A+L+HDDV+D++D RRG + ++ GN ++L GD + +RA + +L SLK
Sbjct: 72 LIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKV 131
Query: 191 TEVIMEC------------------------YMQKTYNKTAALVSNSCKAVAYLSGQREE 226
EV+ E YM+ Y+KTA L + + L+G E
Sbjct: 132 LEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPE 191
Query: 227 VATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM-----EE 281
+YG+ LG A+QLIDD+LD+ LGK DL G T P+L AM E+
Sbjct: 192 EEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQ 251
Query: 282 FPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDA 341
+R I + ++ +LE + ++ T + A + A A AA+ LP+
Sbjct: 252 AQMIRTAIEQGNGRHL-LEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPD------ 304
Query: 342 TNARTALVHITQKIITRNK 360
T R AL+ + + R++
Sbjct: 305 TPWREALIGLAHIAVQRDR 323
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 147/319 (46%), Gaps = 57/319 (17%)
Query: 74 ELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAE 133
+L + GY+ G GK++ P + +L A A+ GN + IA
Sbjct: 30 QLINQLGYYIVSG-GGKRIRPMIAVLAARAVGYE---------GNAHV--------TIAA 71
Query: 134 ITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA---LVALASLKH 190
+ E IH A+L+HDDV+D++D RRG + ++ GN ++L GD + +RA + +L SLK
Sbjct: 72 LIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKV 131
Query: 191 TEVIMEC------------------------YMQKTYNKTAALVSNSCKAVAYLSGQREE 226
EV+ E YM+ Y+KTA L + + L+G E
Sbjct: 132 LEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPE 191
Query: 227 VATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM-----EE 281
+YG+ LG A+QLIDD+LD+ LGK DL G T P+L AM E+
Sbjct: 192 EEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQ 251
Query: 282 FPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDA 341
+R I + ++ +LE + ++ T + A + A A AA+ LP+
Sbjct: 252 AQMIRTAIEQGNGRHL-LEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPD------ 304
Query: 342 TNARTALVHITQKIITRNK 360
T R AL+ + + R++
Sbjct: 305 TPWREALIGLAHIAVQRDR 323
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 160/351 (45%), Gaps = 64/351 (18%)
Query: 41 NENKKHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLM 100
+E +K DP ++ ++ + + + ++VP + Y + G GK++ P + +L
Sbjct: 10 DEIQKLADP------DMQKVNQNILAQLNSDVPLIGQLGFYIVQGG--GKRIRPLIAVLA 61
Query: 101 ATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGS 160
A +L E S ++ T + E IH ASL+HDDV+D++D RRG +
Sbjct: 62 ARSLGF---EGSNSITCATFV--------------EFIHTASLLHDDVVDESDMRRGRAT 104
Query: 161 LSSVMGNKLAILAGDLLISRALVALASLKH----------TEVIMEC------------- 197
++ GN ++L GD + +RA +A L+ T V+ E
Sbjct: 105 ANAEFGNAASVLVGDFIYTRAFQLVAQLESLKILSIMADATNVLAEGEVQQLMNVNDPET 164
Query: 198 ----YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTG 253
YM+ Y+KTA L + +A A ++G E +YG+ LG A+QL+DD+LD++
Sbjct: 165 SEANYMRVIYSKTARLFEVAGQAAAIVAGGTEAQEKALQDYGRYLGTAFQLVDDVLDYSA 224
Query: 254 TSASLGKASLTDLRNGIITAPILFAM-----EEFPQLRAFINSSSDNPANVDVILEYLGK 308
+ +LGK DL G T P+L AM ++ +R I A +D +L + +
Sbjct: 225 NTQALGKNVGDDLAEGKPTLPLLHAMRHGNAQQAALIREAIEQGGKREA-IDEVLAIMTE 283
Query: 309 SHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 359
+ A + A A AI+ LPE+ + AL+ + + RN
Sbjct: 284 HKSLDYAMNRAKEEAQKAVDAIEILPESE------YKQALISLAYLSVDRN 328
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 158/338 (46%), Gaps = 70/338 (20%)
Query: 60 ISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNT 119
+ RL + ++ + AA + G GK++ P +LL L +T
Sbjct: 17 VEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLL-------------SGFLNDT 61
Query: 120 LILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLIS 179
DL R A E++H+ASL+HDD +D++D RRG S+ AI G L++
Sbjct: 62 QKDDLIR----TAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLA 117
Query: 180 RALVALASLKHTE---------------------------VIMECYMQKTYNKTAALVSN 212
RAL +A++ +++ V Y+++ KTA L+
Sbjct: 118 RALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEA 177
Query: 213 SCKAVAYLSGQREEVATLAF-EYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGII 271
SC A LS Q +E +T ++G +G++YQ+IDDILD+T A+LGK +D+RNG I
Sbjct: 178 SCHLGA-LSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHI 236
Query: 272 TAPILFAM-----EEFPQLRAFIN---SSSDNPANVDVILEYL---GKSHGIQRTTELAL 320
T P++ A+ ++ +L A + S+SD D + +Y+ K +GI+ L+
Sbjct: 237 TYPLMAAIANLKEQDDDKLEAVVKHLTSTSD-----DEVYQYIVSQVKQYGIEPAELLSR 291
Query: 321 KHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 358
K+ A + L + +N + L I +K++ R
Sbjct: 292 KYGDKAKYHLSQLQD------SNIKDYLEEIHEKMLKR 323
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 156/353 (44%), Gaps = 64/353 (18%)
Query: 48 DPFSLVGDEL-SLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNV 106
D SL +E+ + ++ R+++ V + L A+ + F G GK+L P V++
Sbjct: 4 DDLSLYFNEIVNNVNFRIKNFVKSNFKTLEEASFHLFTAG--GKRLRPLVLVS------- 54
Query: 107 CTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMG 166
S +++G R R A E++H +L+HDD++D+ RRG+ ++ G
Sbjct: 55 -----SSDLIGGD-----RERAYKAAAAVEILHNFTLVHDDIMDNDGLRRGLPTVHVKWG 104
Query: 167 NKLAILAGDLLISRALVAL-ASLK---------------------------------HTE 192
+AILAGD L ++A AL +LK +
Sbjct: 105 EPMAILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFITSIEIISEGQAMDMSFENRLD 164
Query: 193 VIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFT 252
V E Y+Q KTA L S S ++ ++V EYG NLG+++Q++DDIL
Sbjct: 165 VTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDILGII 224
Query: 253 GTSASLGKASLTDLRNGIITAPILFAMEEFPQ-----LRAFINSSSDNPANVDVILEYLG 307
G LGK +D+R G T ++ + E + L + + + +++ E +
Sbjct: 225 GDEKELGKPIYSDIREGKKTILVIKTLSEATEDEKKILVSTLGNKEAKKEDLERASEIIR 284
Query: 308 KSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360
K H +Q +LA K++ LA + +P V A AL ++ Q I R K
Sbjct: 285 K-HSLQYAYDLAKKYSDLAIENLREIP----VSNKTAEKALKYLAQFTIQRRK 332
>sp|Q5U2R1|DLP1_RAT Decaprenyl-diphosphate synthase subunit 2 OS=Rattus norvegicus
GN=Pdss2 PE=2 SV=1
Length = 401
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 155/336 (46%), Gaps = 51/336 (15%)
Query: 52 LVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPEL 111
L+ DELS ++M++R +V + P L +A G F + +L V+LL++ A T
Sbjct: 73 LLSDELSNVAMQVRKLVGTQHPLLTTARG-FVHDSRHNLQLRGLVVLLISKAAGPSTRNS 131
Query: 112 SPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSV-MGNKLA 170
S ++ + Q+ +AEITE+IH A L+H +++ ++ + G L + GNK+A
Sbjct: 132 SSQ--NYDMVSGIYSCQRNLAEITELIHTALLVHRGIVNLSELQSSDGPLKDMKFGNKIA 189
Query: 171 ILAGDLLISRALVALASLKHTEVI--------------------------------MECY 198
+L+GD L++ A LA L++T+V+ + +
Sbjct: 190 VLSGDFLLANACNGLALLQNTKVVELLASALMDLVQGIYQENSASTQGNPIPDDIRISTW 249
Query: 199 MQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASL 258
++T+ AL++ SCKA L+ V +AF+YGK++ +++++ D+ F AS
Sbjct: 250 KEQTFLSHCALLAKSCKAAMELAKHDAAVQDMAFQYGKHMAMSHKINSDLQPFIKDKASD 309
Query: 259 GKASLTDLRNGIITAPILFAMEEFPQ---LRAFINSSSDNPANVDVILEYLGKSHGIQRT 315
K + +AP++ E + ++ + N + E + G+
Sbjct: 310 SKTF------NLNSAPVVLHQEFLGRDLWIKQIGEAQEKGRLNYTKLRETIKAGKGVTSA 363
Query: 316 TELALKHASLAAAAIDSLPETHDVDATNARTALVHI 351
+L H + A A++S P + AR+AL +I
Sbjct: 364 IDLCRYHGNKALEALESFP------PSEARSALENI 393
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 156/346 (45%), Gaps = 70/346 (20%)
Query: 60 ISMRLRSMVVAEVPELASAAGYFFKEGVE-----------------GKKLCPTVILLMAT 102
+++ + ++A V + +A F EG+ GK++ P + LL A
Sbjct: 1 MAIDFKQDILAPVAQDFAAMDQFINEGISSKVALVMSVSKHVVEAGGKRMRPIMCLLAAY 60
Query: 103 ALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLS 162
A C G T + + Q +A I EM+H A+L+HDDV+D++ RRG + +
Sbjct: 61 A---C---------GETNL----KHAQKLAAIIEMLHTATLVHDDVVDESGLRRGRPTAN 104
Query: 163 SVMGNKLAILAGDLLISRALVALASLKHT----------------EVIM----------- 195
+ N+ A+L GD LI+RA L L + EV+
Sbjct: 105 ATWNNQTAVLVGDFLIARAFDLLVDLDNMILLKDFSTGTCEIAEGEVLQLQAQHQPDTTE 164
Query: 196 ECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 255
+ Y+Q + KT+ L + + A L+G+ E L + + G A+Q+IDDILD+T +
Sbjct: 165 DIYLQIIHGKTSRLFELATEGAAILAGKPEYREPLR-RFAGHFGNAFQIIDDILDYTSDA 223
Query: 256 ASLGKASLTDLRNGIITAPILFAMEEFP-QLRAFINSS--SDNPANVDVILEYLGKSHGI 312
+LGK DL G T P++ AM+ + R I S + + ++ ++ + S +
Sbjct: 224 DTLGKNIGDDLMEGKPTLPLIAAMQNTQGEQRDLIRRSIATGGTSQLEQVIAIVQNSGAL 283
Query: 313 QRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 358
+ A + A A++ LPE + R ALV++T+ + R
Sbjct: 284 DYCHKRATEETERALQALEILPE------STYRQALVNLTRLALDR 323
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 147/340 (43%), Gaps = 71/340 (20%)
Query: 64 LRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILD 123
++S + +VP+L A+ + F G GK+L P ++ +S ++ G
Sbjct: 19 IKSYISGDVPKLYEASYHLFTSG--GKRLRPLIL------------TISSDLFGGQ---- 60
Query: 124 LRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALV 183
R R E++H +L+HDD++D + RRG+ ++ G LAILAGDLL ++A
Sbjct: 61 -RERAYYAGAAIEVLHTFTLVHDDIMDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQ 119
Query: 184 ----ALASLKHTEVI--------------------MEC----------YMQKTYNKTAAL 209
AL L +I ME Y+ KTAAL
Sbjct: 120 LLTQALRGLPSETIIKAFDIFTRSIIIISEGQAVDMEFEDRIDIKEQEYLDMISRKTAAL 179
Query: 210 VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNG 269
S S A ++G + L ++G NLG+A+Q++DDIL T LGK +D+R G
Sbjct: 180 FSASSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIREG 239
Query: 270 IITAPILFAMEEFPQ------LRAFINSSSDNP---ANVDVILEYLGKSHGIQRTTELAL 320
T ++ +E + L+A N S+ ++ D+I K + + LA
Sbjct: 240 KKTILVIKTLELCKEDEKKIVLKALGNKSASKEELMSSADII-----KKYSLDYAYNLAE 294
Query: 321 KHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360
K+ A +++ + D+ AL ++ + I R K
Sbjct: 295 KYYKNAIDSLNQVSSKSDIPG----KALKYLAEFTIRRRK 330
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 138/305 (45%), Gaps = 57/305 (18%)
Query: 89 GKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV 148
GKK+ P++ LL A+ PE + V A E+IH SLIHDD+
Sbjct: 43 GKKIRPSLALLSCEAVG-GNPEDAAGV----------------AAAIELIHTFSLIHDDI 85
Query: 149 LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTE--------VIMEC--- 197
+DD + RRG S+ + G +AILAGD+L S+A A+ +E V+ C
Sbjct: 86 MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNGDSERVKDALAVVVDSCVKI 145
Query: 198 --------------------YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKN 237
YM+ Y KTAAL++ + KA A + G E +YGK
Sbjct: 146 CEGQALDMGFEERLDVTEDEYMEMIYKKTAALIAAATKAGAIMGGASEREVEALEDYGKF 205
Query: 238 LGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQ---LRAFINSSSD 294
+GLA+Q+ DD LD SLGK +D+ G +T ++ A+EE + R S
Sbjct: 206 IGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALEEASEEDRERLISILGSG 265
Query: 295 NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQK 354
+ +V +E + Q E+AL + +A ++ L + ++AR AL+ I
Sbjct: 266 DEGSVAEAIEIFERYGATQYAHEVALDYVRMAKERLEILED------SDARDALMRIADF 319
Query: 355 IITRN 359
++ R
Sbjct: 320 VLERE 324
>sp|Q86YH6|DLP1_HUMAN Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2
PE=1 SV=2
Length = 399
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 160/336 (47%), Gaps = 52/336 (15%)
Query: 52 LVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPEL 111
L+ DELS I+M++R +V + P L +A G + +L V+LL++ A + +
Sbjct: 72 LLSDELSNIAMQVRKLVGTQHPLLTTARG-LVHDSWNSLQLRGLVVLLISKAAGPSS--V 128
Query: 112 SPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSV-MGNKLA 170
+ + ++ + Q+ +AEITE+IH+A L+H +++ + + G L + GNK+A
Sbjct: 129 NTSCQNYDMVSGIYSCQRSLAEITELIHIALLVHRGIVNLNELQSSDGPLKDMQFGNKIA 188
Query: 171 ILAGDLLISRALVALASLKHTEVI-------------------------------MECYM 199
IL+GD L++ A LA L++T+V+ + +
Sbjct: 189 ILSGDFLLANACNGLALLQNTKVVELLASALMDLVQGVYHENSTSKESYITDDIGISTWK 248
Query: 200 QKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 259
++T+ AL++ SC+A L+ EV +AF+YGK++ +++++ D+ F S
Sbjct: 249 EQTFLSHGALLAKSCQAAMELAKHDAEVQNMAFQYGKHMAMSHKINSDVQPFIKEKTS-- 306
Query: 260 KASLTDLRNGIITAPILFAMEEFPQLRAFIN--SSSDNPANVDV--ILEYLGKSHGIQRT 315
S+T N +AP++ +EF +I + +D + E + G+
Sbjct: 307 -DSMTFNLN---SAPVVL-HQEFLGRDLWIKQIGEAQEKGRLDYAKLRERIKAGKGVTSA 361
Query: 316 TELALKHASLAAAAIDSLPETHDVDATNARTALVHI 351
+L H + A A++S P + AR+AL +I
Sbjct: 362 IDLCRYHGNKALEALESFP------PSEARSALENI 391
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 30/176 (17%)
Query: 135 TEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT--- 191
E+IH +LIHDD++D+ D RRG ++ V G +AILAGDLL ++A A++ +K
Sbjct: 76 VELIHNYTLIHDDIMDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDNKKA 135
Query: 192 -EVI--------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQR 224
EV+ ME Y+ KT AL+ S A ++
Sbjct: 136 HEVLKILSKACVEVCEGQAMDMEFENYYPTMEEYLDMIRKKTGALLEASVGIGAVMADCN 195
Query: 225 EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME 280
EE EY K +GL +Q+ DD+LD G LGK +D+R G T ++ A++
Sbjct: 196 EEEREALKEYAKRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHALK 251
>sp|Q33DR3|DLP1_MOUSE Decaprenyl-diphosphate synthase subunit 2 OS=Mus musculus GN=Pdss2
PE=1 SV=2
Length = 401
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 152/336 (45%), Gaps = 51/336 (15%)
Query: 52 LVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPEL 111
L+ DELS I+M++R +V P L +A + +L V+LL++ A T
Sbjct: 73 LLSDELSNIAMQVRKLVGTGHPLLTTARA-LVHDSRHNLQLRGLVVLLISKAAGPSTRNA 131
Query: 112 SPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSV-MGNKLA 170
+ ++ + Q+ +AEITE+IH A L+H +++ ++ + G L + GNK+A
Sbjct: 132 A--CQNYDMVSGVYSCQRSLAEITELIHTALLVHRGIVNLSELQSSDGPLKDMQFGNKIA 189
Query: 171 ILAGDLLISRALVALASLKHTEVI--------------------------------MECY 198
IL+GD L++ A LA L++T+V+ + +
Sbjct: 190 ILSGDFLLANACNGLALLQNTKVVELLSSALMDLVHGVYQENSASTKENSIPDDIGISTW 249
Query: 199 MQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASL 258
++T+ AL++ SC+A L+ V +AF+YGK++ +++++ D+ F AS
Sbjct: 250 KEQTFLSHCALLAKSCQAAMELAKHDAAVQDMAFQYGKHMAMSHKINADLQPFIKDKASD 309
Query: 259 GKASLTDLRNGIITAPILFAMEEFPQ---LRAFINSSSDNPANVDVILEYLGKSHGIQRT 315
K + +AP++ E + ++ + N + E + G+
Sbjct: 310 SKTF------NLNSAPVVLHQEFLGRDLWIKQIGEAQEKGSLNYSKLRETIKAGKGVTSA 363
Query: 316 TELALKHASLAAAAIDSLPETHDVDATNARTALVHI 351
+L H + A A++S P + AR+AL +I
Sbjct: 364 IDLCRYHGNKALEALESFP------PSEARSALENI 393
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 150/333 (45%), Gaps = 62/333 (18%)
Query: 63 RLRSMVVAEVPE-LASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLI 121
R+R + PE L A+ + G GKK+ P++ LL + A+ P + V
Sbjct: 18 RIRESISDITPETLLRASEHLITAG--GKKIRPSLALLSSEAVG-GDPGDAAGV------ 68
Query: 122 LDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA 181
A E+IH SLIHDD++DD + RRG ++ + G +AILAGD+L S+A
Sbjct: 69 ----------AAAIELIHTFSLIHDDIMDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKA 118
Query: 182 LVALASLKHTEVIMEC-------------------------------YMQKTYNKTAALV 210
A+ +E++ E YM+ Y KTAAL+
Sbjct: 119 FEAVIRNGDSEMVKEALAVVVDSCVKICEGQALDMGFEERLDVTEEEYMEMIYKKTAALI 178
Query: 211 SNSCKAVAYLSGQR-EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNG 269
+ + KA A + G +E+A L +YG+ +GLA+Q+ DD LD SLGK +D+ G
Sbjct: 179 AAATKAGAIMGGGSPQEIAALE-DYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEG 237
Query: 270 IITAPILFAME---EFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLA 326
+T ++ A+E E + R S + V +E + + +AL H +A
Sbjct: 238 KMTLMVVKALERASEKDRERLISILGSGDEKLVAEAIEIFERYGATEYAHAVALDHVRMA 297
Query: 327 AAAIDSLPETHDVDATNARTALVHITQKIITRN 359
++ L E ++AR AL I ++ R
Sbjct: 298 KERLEVLEE------SDAREALAMIADFVLERE 324
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 38/184 (20%)
Query: 136 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRA------------ 181
EMIH SLIHDD+ +D+ RRG + + G LAILAGD L++ A
Sbjct: 79 EMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVP 138
Query: 182 ------------------------LVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAV 217
++ L+S ++ +E +KT AL+ + +
Sbjct: 139 ADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSG 198
Query: 218 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277
A L+G +E+ Y +N+GLA+Q+IDD+LD T LGK+ DL+ T P +
Sbjct: 199 ALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFW 258
Query: 278 AMEE 281
+EE
Sbjct: 259 GVEE 262
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 30/172 (17%)
Query: 136 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVAL---------A 186
E++H SL+HDD++D + RR ++ ++ G+ +A+LAGD ++S A L A
Sbjct: 102 ELVHNFSLVHDDLMDRDEHRRHRPTVWALWGDAMALLAGDAMLSLAHEVLLDCDSPHVGA 161
Query: 187 SLK---------------------HTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQRE 225
+L+ T+V ++ ++ KTAAL++ S + A L+G
Sbjct: 162 ALRAISEATRELIRGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPR 221
Query: 226 EVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277
V YG+++GLA+QL+DD+L G GK +DLR+ T P+ +
Sbjct: 222 SVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 30/172 (17%)
Query: 136 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVAL---------A 186
E++H SL+HDD++D + RR ++ ++ G+ +A+LAGD ++S A L A
Sbjct: 102 ELVHNFSLVHDDLMDRDEHRRHRPTVWALWGDAMALLAGDAMLSLAHEVLLDCDSPHVGA 161
Query: 187 SLK---------------------HTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQRE 225
+L+ T+V ++ ++ KTAAL++ S + A L+G
Sbjct: 162 ALRAISEATRELIRGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPR 221
Query: 226 EVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277
V YG+++GLA+QL+DD+L G GK +DLR+ T P+ +
Sbjct: 222 SVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 44/189 (23%)
Query: 89 GKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV 148
GK++ P ++LL++ +C+ S R A EM+H ASLIHDD+
Sbjct: 50 GKRIRPIILLLVS---EICSGSYS--------------RSLNAALAVEMMHSASLIHDDL 92
Query: 149 LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVIMEC----------- 197
LD RR + S G A+L GD LI+++ +A S +VI +
Sbjct: 93 LDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKS-IAFISPYGEKVIQDFGKAGMDMAEGE 151
Query: 198 ---------------YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAY 242
Y + Y KTA+L + S AY G EE+A +G LG AY
Sbjct: 152 VLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAY 211
Query: 243 QLIDDILDF 251
Q++DDIL+F
Sbjct: 212 QIVDDILEF 220
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 145/328 (44%), Gaps = 59/328 (17%)
Query: 73 PE-LASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELS------PNVLGNTLILDLR 125
PE L SA+ Y G GK+L PT++LL A +L P LS P++ G+ + D+
Sbjct: 31 PERLYSASRYLLDAG--GKRLRPTILLLAAESLADVEP-LSADYRQFPSLPGDEV--DVL 85
Query: 126 RRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLIS------ 179
I E+I +LIHDD++DD D RRG+ ++ + AILAGD L S
Sbjct: 86 SAAVSI----EVIQSFTLIHDDIMDDDDLRRGVPAVHREYDLETAILAGDTLYSKAFEYM 141
Query: 180 --------RALVALASLKHT------------------EVIMECYMQKTYNKTAALVSNS 213
R++ AL L T +V E Y++ KTA L + +
Sbjct: 142 LDTGAPAERSVEALDELATTCTEICEGQALDVDFENRSDVTTEEYLEMVEFKTAVLYAAA 201
Query: 214 CKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITA 273
A L G +E YG ++G A+Q+ DD+LD T S LGK +DL T
Sbjct: 202 ASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRGSDLVENKRTV 261
Query: 274 PILFAMEEFPQLRAFINSSSDNP--ANVDVILEYLGKSHGIQRTTELALKHASLAAAAID 331
L A ++ + + SD+P A ++ ++ L + I E+AL + +D
Sbjct: 262 ITLHARDQGIDVEGLV---SDDPSDAEIEAAVQTLEDAGSIDFAREMALDLVTSGKERLD 318
Query: 332 SLPETHDVDATNARTALVHITQKIITRN 359
LPE AR L I ++ R+
Sbjct: 319 VLPENE------ARQLLEDIADFLVERS 340
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 38/197 (19%)
Query: 135 TEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRAL--VALASLK- 189
EMIH SLIHDD+ +D+ D RRG + V G +A+LAGD L++ A +A+++L
Sbjct: 147 VEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNV 206
Query: 190 ---------------------------------HTEVIMECYMQKTYNKTAALVSNSCKA 216
+EV +E +KTA L+ +
Sbjct: 207 SSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVL 266
Query: 217 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 276
A L G +E +Y +++GL +Q++DDILD T +S LGK + DL +T P L
Sbjct: 267 GAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKL 326
Query: 277 FAMEEFPQLRAFINSSS 293
+E+ + +N +
Sbjct: 327 LGIEKSREFAEKLNKEA 343
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 52/242 (21%)
Query: 75 LASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEI 134
L+ A+ + K G GK+L P + LL A L E R +A
Sbjct: 18 LSGASLHLIKAG--GKRLRPLITLLTARMLGGLEAEA---------------RAIPLAAS 60
Query: 135 TEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALA-----SLK 189
E H SLIHDD++D + RRG+ + V G+ AILAGD L + A +A +
Sbjct: 61 IETAHTFSLIHDDIMDRDEVRRGVPTTHVVYGDDWAILAGDTLHAAAFKMIADSREWGMS 120
Query: 190 HTE------VIMECYMQ------------KTYN------------KTAALVSNSCKAVAY 219
H + V+ E +Q +T++ KT AL+ + + A
Sbjct: 121 HEQAYRAFKVLSEAAIQISRGQAYDMLFEETWDVDVADYLNMVRLKTGALIEAAARIGAV 180
Query: 220 LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM 279
+G E+ + E G N G+A+Q+ DDIL G GK DLR G T +++A+
Sbjct: 181 AAGAGSEIEKMMGEVGMNAGIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYAV 240
Query: 280 EE 281
++
Sbjct: 241 KK 242
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 41/199 (20%)
Query: 136 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEV 193
EMIH SLIHDD+ +D+ D RRG + V G +A+LAGD L+S A LAS +EV
Sbjct: 141 EMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEV 200
Query: 194 I---------------------------------------MECYMQKTYNKTAALVSNSC 214
+E +KTAAL+ S
Sbjct: 201 SPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASA 260
Query: 215 KAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 274
+ G +E ++ + +GL +Q++DDILD T +S LGK + DL +T P
Sbjct: 261 VLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYP 320
Query: 275 ILFAMEEFPQLRAFINSSS 293
L +E+ + +N+ +
Sbjct: 321 KLMGLEKSREFAEKLNTEA 339
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 42/197 (21%)
Query: 136 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEV 193
EMIH SLIHDD+ +D+ D RRG + V G +A+LAGD L+S A LAS ++V
Sbjct: 145 EMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDV 204
Query: 194 IMECYMQKTY----------------------------------------NKTAALVSNS 213
+ + + +KTAAL+ S
Sbjct: 205 VSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEAS 264
Query: 214 CKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITA 273
A + G ++ ++ + +GL +Q++DDILD T +S LGK + DL +T
Sbjct: 265 AVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTY 324
Query: 274 PILFAMEEFPQLRAFIN 290
P + +E+ + +N
Sbjct: 325 PKIMGLEKSREFAEKLN 341
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 135 TEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALAS----- 187
EMIH SLIHDD+ +D+ D RRG + V G +A+LAGD LIS A LA+
Sbjct: 123 VEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFEHLATSTAVS 182
Query: 188 --------------------------------LKHTEVIMECYMQKTYNKTAALVSNSCK 215
+ +V +E +KTA L+ +
Sbjct: 183 PARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLLEAATV 242
Query: 216 AVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPI 275
A + G +E + + +GL +Q++DDILD T +S LGK + DL +T P
Sbjct: 243 LGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADKLTYPK 302
Query: 276 LFAMEE 281
L +E+
Sbjct: 303 LMGLEK 308
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 38/185 (20%)
Query: 135 TEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALAS----- 187
EMIH SL+HDD+ +D+ D RRG + V G +A+LAGD L++ A +A+
Sbjct: 134 VEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGV 193
Query: 188 --------------------LKHTEVIMEC----------YMQKTY-NKTAALVSNSCKA 216
L +V+ C +++ + +KTAAL+ S
Sbjct: 194 SSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVL 253
Query: 217 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 276
A + G +E + ++ + +GL +Q++DDILD T +S LGK + DL +T P L
Sbjct: 254 GAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKL 313
Query: 277 FAMEE 281
+++
Sbjct: 314 LGIDK 318
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 136 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLI--------------- 178
EMIH SLIHDD+ +D+ D RRG + + G +A+LAGD L+
Sbjct: 147 EMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAGVT 206
Query: 179 -SRALVALASLKHT--------------------EVIMECYMQKTYNKTAALVSNSCKAV 217
SR + A+A L + V +E +KTAAL+ +S
Sbjct: 207 PSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLG 266
Query: 218 AYLSGQRE-EVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 276
A L G EV L + + +GL +Q++DDILD T +S LGK + DL T P L
Sbjct: 267 AILGGGTNVEVEKLR-RFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKL 325
Query: 277 FAMEEFPQLRAFIN 290
+E+ + A +N
Sbjct: 326 LGLEKAKEFAAELN 339
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 51/247 (20%)
Query: 74 ELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAE 133
EL A+ Y G GK+L P V++L A A+ + P +
Sbjct: 32 ELYKASRYLVDAG--GKRLRPAVLILAAEAVGSNLRSVLPAAVA---------------- 73
Query: 134 ITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEV 193
E++H +LIHDD++D D RRG+ ++ G AILAGD L S+A L+ +++ V
Sbjct: 74 -VELVHNFTLIHDDIMDRDDIRRGMPAVHVKWGEAGAILAGDTLYSKAFEILSKVENEPV 132
Query: 194 -IMEC-------------------------------YMQKTYNKTAALVSNSCKAVAYLS 221
+++C Y++ KT+ L + + K A L
Sbjct: 133 RVLKCMDVLSKTCTEICEGQWLDMDFETRKKVTESEYLEMVEKKTSVLYAAAAKIGALLG 192
Query: 222 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 281
G +EVA EYG+ +G+ +Q+ DD+LD T LGK +DL G T ++ A E+
Sbjct: 193 GASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYTLIVINAFEK 252
Query: 282 FPQLRAF 288
+L F
Sbjct: 253 GVKLDIF 259
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 86/205 (41%), Gaps = 39/205 (19%)
Query: 136 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEV 193
EMIH SLIHDD+ +D+ D RRG + V G +AILAGD L++ A + + +
Sbjct: 76 EMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLITEIDDERI 135
Query: 194 IMECYMQ--------------------------KTY----------NKTAALVSNSCKAV 217
++ KT +KT ++ S A
Sbjct: 136 PPSVRLRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHRHKTGKMLQYSVHAG 195
Query: 218 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277
A + G E+ +LGLA+Q+ DDILD G +GK +D N T P L
Sbjct: 196 ALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATYPALL 255
Query: 278 AMEEFPQLRAF-INSSSDNPANVDV 301
++ + AF I ++ + N DV
Sbjct: 256 SLAGAKEKLAFHIEAAQRHLRNADV 280
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 43/187 (22%)
Query: 136 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKL---------------------AIL 172
EMIH +SLIHDD+ +D+AD RRG + V G + ++
Sbjct: 136 EMIHTSSLIHDDLPCMDNADLRRGKPTNHKVFGEDMAVLAGDALLALAFEHMTVVSSGLV 195
Query: 173 AGDLLISRALVALAS-------------------LKHTEVIMECYMQKTYNKTAALVSNS 213
A + +I RA+V LA L +V +E +KTAAL+ +
Sbjct: 196 ASERMI-RAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAALLEAA 254
Query: 214 CKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITA 273
A + G EE +Y + +GL +Q++DDILD T ++ LGK + D+ G +T
Sbjct: 255 AVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTY 314
Query: 274 PILFAME 280
P L +E
Sbjct: 315 PRLIGLE 321
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 38/185 (20%)
Query: 135 TEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLIS------------- 179
EMIH SLI DD+ +D+ D RRG + V G +AIL+G L+S
Sbjct: 153 VEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMTTAEISS 212
Query: 180 ----------------RALVALAS-------LKHTEVIMECYMQKTYNKTAALVSNSCKA 216
R LVA + L EV +E +KTA L+ +
Sbjct: 213 ERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVL 272
Query: 217 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 276
A + G +E ++ + +GL +Q++DDILD T +S LGK + D G +T P L
Sbjct: 273 GAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKL 332
Query: 277 FAMEE 281
+E+
Sbjct: 333 IGLEK 337
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 38/185 (20%)
Query: 135 TEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLIS------------- 179
EMIH SLI DD+ +D+ D RRG + V G +AIL+G L++
Sbjct: 149 VEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLTEADVSS 208
Query: 180 ----RALVALA-------------------SLKHTEVIMECYMQKTYNKTAALVSNSCKA 216
RA+ LA L+ +V +E +KT +L+ S
Sbjct: 209 KKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVI 268
Query: 217 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 276
A + G E+ + + +GL +Q++DDILD T +S LGK + D G +T P +
Sbjct: 269 GAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKV 328
Query: 277 FAMEE 281
+E+
Sbjct: 329 IGVEK 333
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,319,817
Number of Sequences: 539616
Number of extensions: 4879747
Number of successful extensions: 12591
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 12374
Number of HSP's gapped (non-prelim): 138
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)