Query 018156
Match_columns 360
No_of_seqs 278 out of 1655
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:36:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02890 geranyl diphosphate s 100.0 6.5E-70 1.4E-74 536.6 34.9 332 29-360 64-422 (422)
2 PLN02857 octaprenyl-diphosphat 100.0 1.9E-66 4E-71 512.3 30.8 298 44-360 92-416 (416)
3 TIGR02749 prenyl_cyano solanes 100.0 4.6E-66 9.9E-71 498.2 32.2 290 49-360 6-322 (322)
4 CHL00151 preA prenyl transfera 100.0 7.9E-66 1.7E-70 497.2 31.0 291 48-360 6-323 (323)
5 TIGR02748 GerC3_HepT heptapren 100.0 2.1E-65 4.5E-70 493.5 32.5 287 47-360 3-319 (319)
6 PRK10888 octaprenyl diphosphat 100.0 5.6E-65 1.2E-69 490.6 31.7 290 46-360 3-323 (323)
7 COG0142 IspA Geranylgeranyl py 100.0 4.7E-64 1E-68 484.2 32.2 290 49-360 3-322 (322)
8 KOG0776 Geranylgeranyl pyropho 100.0 6.5E-61 1.4E-65 458.6 28.3 285 46-358 64-384 (384)
9 PRK10581 geranyltranstransfera 100.0 2.5E-58 5.3E-63 439.8 28.5 253 51-360 5-299 (299)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 7.8E-53 1.7E-57 395.5 25.5 227 72-358 3-259 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 1.1E-53 2.4E-58 401.5 15.7 223 77-319 3-259 (260)
12 KOG0711 Polyprenyl synthetase 100.0 4.3E-39 9.2E-44 298.2 24.0 291 52-360 7-347 (347)
13 cd00867 Trans_IPPS Trans-Isopr 100.0 8.4E-39 1.8E-43 295.5 23.8 208 92-358 1-236 (236)
14 KOG0777 Geranylgeranyl pyropho 100.0 5E-37 1.1E-41 272.5 20.0 242 73-337 21-293 (322)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 1.6E-19 3.5E-24 163.7 23.1 185 129-337 13-227 (243)
16 PF07307 HEPPP_synt_1: Heptapr 96.6 0.041 8.8E-07 50.2 12.1 78 127-209 34-114 (212)
17 cd00683 Trans_IPPS_HH Trans-Is 94.0 1.8 3.8E-05 40.7 14.1 86 230-337 143-228 (265)
18 PLN02632 phytoene synthase 92.4 1.3 2.8E-05 43.3 10.8 118 195-337 161-280 (334)
19 PF00494 SQS_PSY: Squalene/phy 91.7 2 4.2E-05 40.2 10.8 117 195-337 112-229 (267)
20 PRK12884 ubiA prenyltransferas 91.4 3.7 8.1E-05 38.7 12.4 140 130-281 41-199 (279)
21 TIGR03464 HpnC squalene syntha 91.1 4.7 0.0001 37.9 12.7 113 196-337 108-220 (266)
22 TIGR03465 HpnD squalene syntha 90.8 3.3 7.2E-05 38.9 11.4 114 195-337 106-219 (266)
23 PRK12882 ubiA prenyltransferas 89.6 12 0.00026 35.3 14.1 139 131-281 43-201 (276)
24 TIGR01559 squal_synth farnesyl 84.8 9 0.0002 37.5 10.4 85 231-337 166-250 (336)
25 PRK09573 (S)-2,3-di-O-geranylg 81.6 48 0.001 31.3 14.4 54 130-183 41-97 (279)
26 TIGR01474 ubiA_proteo 4-hydrox 77.7 33 0.00072 32.5 11.4 138 130-280 44-203 (281)
27 PRK07566 bacteriochlorophyll/c 72.2 69 0.0015 30.9 12.2 50 133-182 72-124 (314)
28 COG1562 ERG9 Phytoene/squalene 71.4 97 0.0021 29.6 12.8 86 231-338 154-239 (288)
29 PRK12870 ubiA 4-hydroxybenzoat 68.6 1E+02 0.0022 29.4 12.4 54 131-184 51-109 (290)
30 PRK12883 ubiA prenyltransferas 68.5 78 0.0017 29.8 11.5 50 133-182 44-96 (277)
31 PRK12872 ubiA prenyltransferas 67.9 1.1E+02 0.0023 28.8 14.1 35 237-282 172-206 (285)
32 PF06783 UPF0239: Uncharacteri 65.9 7.5 0.00016 30.1 3.2 24 224-247 14-37 (85)
33 PRK12871 ubiA prenyltransferas 65.2 82 0.0018 30.2 11.0 46 138-184 54-113 (297)
34 TIGR02056 ChlG chlorophyll syn 64.9 1.3E+02 0.0029 28.8 12.4 50 133-182 61-113 (306)
35 PRK12878 ubiA 4-hydroxybenzoat 64.5 1.4E+02 0.003 28.8 13.1 140 130-281 76-236 (314)
36 PRK12848 ubiA 4-hydroxybenzoat 62.0 1.4E+02 0.0031 28.1 12.7 136 133-280 49-205 (282)
37 TIGR02748 GerC3_HepT heptapren 56.1 1.4E+02 0.0031 28.8 11.0 46 220-277 57-102 (319)
38 PRK10888 octaprenyl diphosphat 53.2 1.9E+02 0.0041 28.0 11.3 45 221-277 59-103 (323)
39 cd00685 Trans_IPPS_HT Trans-Is 52.4 1.9E+02 0.0041 26.8 10.9 41 226-278 39-79 (259)
40 PLN00012 chlorophyll synthetas 50.9 2.6E+02 0.0057 27.8 13.0 43 131-173 128-173 (375)
41 TIGR01475 ubiA_other putative 49.2 2.3E+02 0.005 26.6 11.8 48 130-177 40-92 (282)
42 PF01040 UbiA: UbiA prenyltran 46.3 2.3E+02 0.0049 25.6 15.0 132 136-279 33-188 (257)
43 TIGR01476 chlor_syn_BchG bacte 46.2 1.7E+02 0.0036 27.6 9.6 49 133-181 45-96 (283)
44 PF00348 polyprenyl_synt: Poly 43.3 2.7E+02 0.0059 25.7 11.0 49 217-277 24-72 (260)
45 PRK12847 ubiA 4-hydroxybenzoat 40.7 3.2E+02 0.0069 25.8 11.3 55 131-185 50-109 (285)
46 COG0382 UbiA 4-hydroxybenzoate 39.8 3.3E+02 0.0071 25.7 15.0 141 128-282 49-212 (289)
47 PRK13362 protoheme IX farnesyl 38.8 3.6E+02 0.0079 25.9 12.1 54 133-186 54-112 (306)
48 TIGR02749 prenyl_cyano solanes 35.3 3.4E+02 0.0074 26.2 10.0 35 231-277 72-106 (322)
49 PRK13595 ubiA prenyltransferas 35.2 4.1E+02 0.009 25.5 10.7 59 210-281 155-213 (292)
50 PRK12888 ubiA prenyltransferas 33.2 4.3E+02 0.0093 25.1 11.9 51 129-179 42-97 (284)
51 PRK13105 ubiA prenyltransferas 29.2 1.1E+02 0.0024 29.2 5.3 34 238-282 172-205 (282)
52 KOG2802 Membrane protein HUEL 28.8 1.2E+02 0.0026 30.2 5.5 49 203-255 368-417 (503)
53 PRK10581 geranyltranstransfera 27.2 1.4E+02 0.0031 28.5 5.8 60 129-188 206-277 (299)
54 PRK07566 bacteriochlorophyll/c 26.7 1.1E+02 0.0024 29.4 5.0 54 129-182 192-246 (314)
55 PRK13105 ubiA prenyltransferas 26.7 1.3E+02 0.0029 28.6 5.4 58 128-185 162-220 (282)
56 TIGR01476 chlor_syn_BchG bacte 25.5 1.7E+02 0.0038 27.5 6.0 50 130-179 165-215 (283)
57 PLN02809 4-hydroxybenzoate non 25.3 6E+02 0.013 24.2 11.4 59 129-187 48-111 (289)
58 PRK13591 ubiA prenyltransferas 23.8 6.7E+02 0.015 24.3 12.8 31 240-281 193-223 (307)
59 CHL00151 preA prenyl transfera 23.7 5.4E+02 0.012 24.8 9.1 35 231-277 73-107 (323)
60 PRK06080 1,4-dihydroxy-2-napht 22.3 3.7E+02 0.0079 25.3 7.6 56 127-182 169-225 (293)
61 PF10776 DUF2600: Protein of u 21.5 1.7E+02 0.0037 28.6 5.0 52 197-257 25-76 (330)
62 PRK12878 ubiA 4-hydroxybenzoat 21.0 3.1E+02 0.0068 26.4 6.9 75 195-273 30-118 (314)
63 TIGR02056 ChlG chlorophyll syn 20.8 2.2E+02 0.0047 27.3 5.7 53 130-182 187-240 (306)
No 1
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=6.5e-70 Score=536.58 Aligned_cols=332 Identities=69% Similarity=0.993 Sum_probs=292.5
Q ss_pred cccCCCCCCCCcccccccCCCchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCC
Q 018156 29 RRYGHQPTFRNSNENKKHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCT 108 (360)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~ 108 (360)
+++++++..+..+.++...++|+++.++++.|++.|++.+.+..|.+.+++.|++..|.+|||+||+|++++++++|.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~ 143 (422)
T PLN02890 64 HGFQYQVRHQSSSLVEEQLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPL 143 (422)
T ss_pred hhhhhhchhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCc
Confidence 34455555555666788899999999999999999999999999999999999998777799999999999999998642
Q ss_pred CCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcC
Q 018156 109 PELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL 188 (360)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~ 188 (360)
++..+.+..+....++.++++.+|+++||||+||||||||||+|++|||+||+|.+||++.||++||||+++|+..++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~ 223 (422)
T PLN02890 144 PESTEGGVLDIVASELRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAAL 223 (422)
T ss_pred ccccccccchhhccchhhhHHHHHHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcC
Confidence 21000000000112345678899999999999999999999999999999999999999999999999999999999887
Q ss_pred CChHHH---------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 018156 189 KHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLA 241 (360)
Q Consensus 189 ~~~~~~---------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~a 241 (360)
.+.+++ +++|++++++|||+||+++|++|++++|++++..+.+++||+++|+|
T Consensus 224 ~~~~~~~~~s~a~~~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlA 303 (422)
T PLN02890 224 KNTEVVSLLATAVEHLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLA 303 (422)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence 765443 67899999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHH
Q 018156 242 YQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALK 321 (360)
Q Consensus 242 fQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~ 321 (360)
|||+||++||+++++.+||+.|+||++||+|+|+++|++..+++..++.+...++++++++.+++.++|++++|+.++++
T Consensus 304 FQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~ 383 (422)
T PLN02890 304 FQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELARE 383 (422)
T ss_pred HHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888899988888889999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 322 HASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 322 ~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
|.++|.+.|+.||+++..++..+|+.|..|++++++|+|
T Consensus 384 ~~~~A~~~L~~lp~s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 384 HANLAAAAIESLPETDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred HHHHHHHHHHhCCCCccccchHHHHHHHHHHHHHHhccC
Confidence 999999999999998743334478999999999999986
No 2
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=1.9e-66 Score=512.34 Aligned_cols=298 Identities=40% Similarity=0.616 Sum_probs=273.4
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhh
Q 018156 44 KKHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILD 123 (360)
Q Consensus 44 ~~~~~~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~ 123 (360)
+.+.+.+..+.++++.+++.|++.+....|.+.+++.|++..| |||+||+|+++++++++..... ..
T Consensus 92 ~~~~~~~~~v~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKriRP~Lvll~a~a~g~~~g~-----------~~ 158 (416)
T PLN02857 92 ISLSELFEPVADDLQQLNDNLQSIVGAENPVLMSAAEQIFGAG--GKRMRPALVFLVSRATAELAGL-----------KE 158 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhCC--CccHhHHHHHHHHHHhccccCC-----------Cc
Confidence 3344556778999999999999999999999999999999988 9999999999999998632110 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---------
Q 018156 124 LRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI--------- 194 (360)
Q Consensus 124 ~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~--------- 194 (360)
..+..+.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|++.++...+.+++
T Consensus 159 ~~~~~~~lAaaiEliH~ASLIHDDI~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~~~ 238 (416)
T PLN02857 159 LTTEHRRLAEITEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKD 238 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHCccccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 12467899999999999999999999999999999999999999999999999999999999877654433
Q ss_pred ------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcc
Q 018156 195 ------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSA 256 (360)
Q Consensus 195 ------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~ 256 (360)
+++|++++++|||+||+++|++|++++|++++..+.+++||+++|+||||+||++||+++++
T Consensus 239 l~~Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~ 318 (416)
T PLN02857 239 FASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTE 318 (416)
T ss_pred HHhhHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 018156 257 SLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPET 336 (360)
Q Consensus 257 ~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~ 336 (360)
.+||+.|+||++||+|+|+++|++..+++++++...+.+++++++++++|+++|++++|++++++|.++|++.|+.||.+
T Consensus 319 ~~GK~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~ 398 (416)
T PLN02857 319 QLGKPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPRG 398 (416)
T ss_pred HhCCCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999998899999988888889999999999999999999999999999999999999998
Q ss_pred CCccchHHHHHHHHHHHHHHhccC
Q 018156 337 HDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 337 ~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+ .++.|..|++++++|.+
T Consensus 399 ~------~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 399 A------FRSSLEDMVDYNLERIY 416 (416)
T ss_pred H------HHHHHHHHHHHHHhccC
Confidence 8 89999999999999975
No 3
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=4.6e-66 Score=498.24 Aligned_cols=290 Identities=44% Similarity=0.676 Sum_probs=270.1
Q ss_pred CchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHH
Q 018156 49 PFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQ 128 (360)
Q Consensus 49 ~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (360)
.+..+.+++..|++.+++.+.+..|.+.++..|++..| |||+||.|++++++++|.... ..+..
T Consensus 6 ~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~ll~~~~~~~~~~--------------~~~~~ 69 (322)
T TIGR02749 6 LFAPVEDDLYLLTDNLKSLVGARHPILYAAAEHLFSAG--GKRLRPAIVLLVSRATAEQQE--------------LTPRH 69 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHCC--CchHHHHHHHHHHHHcCCCcc--------------ccHHH
Confidence 46678999999999999999999999999999999988 999999999999999875311 12467
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH--------------
Q 018156 129 QCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI-------------- 194 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~-------------- 194 (360)
+.+|+++||||+||||||||||+|++|||+||+|.+||++.||++||||+++|++.++...+.+++
T Consensus 70 ~~~A~avEliH~asLiHDDiiD~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq 149 (322)
T TIGR02749 70 RRLAEITEMIHTASLVHDDVIDESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGE 149 (322)
T ss_pred HHHHHHHHHHHHHHHHHcccccCccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999887654433
Q ss_pred -------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCC
Q 018156 195 -------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKA 261 (360)
Q Consensus 195 -------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~ 261 (360)
+++|++++.+|||+||++||++|++++|.+++..+.+++||.++|+||||+||++||+++++.+|||
T Consensus 150 ~~~~~~~~~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~ 229 (322)
T TIGR02749 150 IKQGLNQFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKP 229 (322)
T ss_pred HHHHHcccCCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 018156 262 SLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDA 341 (360)
Q Consensus 262 ~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 341 (360)
.|+||++||+|+|++++++..+.+.+++.+...++++++++.+++.++|+++++++++++|.++|++.|+.+|+++
T Consensus 230 ~g~Dl~~Gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~---- 305 (322)
T TIGR02749 230 AGSDLMKGNLTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSP---- 305 (322)
T ss_pred hhHHHhCCCchHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCH----
Confidence 9999999999999999999888888888888788889999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 018156 342 TNARTALVHITQKIITRNK 360 (360)
Q Consensus 342 ~~~~~~L~~l~~~~~~R~~ 360 (360)
.++.|..|++++++|+.
T Consensus 306 --~~~~L~~l~~~~~~R~~ 322 (322)
T TIGR02749 306 --PREALKELVHFVLSRLY 322 (322)
T ss_pred --HHHHHHHHHHHHHhcCC
Confidence 89999999999999974
No 4
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=7.9e-66 Score=497.23 Aligned_cols=291 Identities=38% Similarity=0.625 Sum_probs=269.2
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHH
Q 018156 48 DPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRR 127 (360)
Q Consensus 48 ~~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
+.+..+.+++..|++.|++.+....|.+.+++.|++..| |||+||.|++++++++|++... ...
T Consensus 6 ~~~~~~~~~l~~i~~~l~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~L~ll~~~~~~~~~~~--------------~~~ 69 (323)
T CHL00151 6 NLLTPIEEELLILEDNLKKLIGSGHPILYAAAKHLFSAG--GKRIRPAIVLLVAKATGGNMEI--------------KTS 69 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCccc--------------cHH
Confidence 346778999999999999999988999999999999988 9999999999999999864211 235
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH-------------
Q 018156 128 QQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI------------- 194 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~------------- 194 (360)
+..+|+++|++|+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..++...+.+++
T Consensus 70 ~~~~A~aiEllH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~G 149 (323)
T CHL00151 70 QQRLAEITEIIHTASLVHDDVIDECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDFAEG 149 (323)
T ss_pred HHHHHHHHHHHHHHHHHHcccccCccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999876654322
Q ss_pred --------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCC
Q 018156 195 --------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 260 (360)
Q Consensus 195 --------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK 260 (360)
.++|++++.+|||+||++||.+|++++|.+++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 150 ~~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK 229 (323)
T CHL00151 150 EIRQGLVQFDTTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGK 229 (323)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 018156 261 ASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVD 340 (360)
Q Consensus 261 ~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~ 340 (360)
|.|+||++||+|||++++++..+++.+.+.+...++++++++.+++.++|++++|+.++++|.++|.+.|+.||.++
T Consensus 230 ~~g~Dl~eGk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~--- 306 (323)
T CHL00151 230 PIGSDLKNGNLTAPVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSS--- 306 (323)
T ss_pred CchhhHhcCchHHHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCH---
Confidence 99999999999999999999888888888777778889999999999999999999999999999999999999988
Q ss_pred chHHHHHHHHHHHHHHhccC
Q 018156 341 ATNARTALVHITQKIITRNK 360 (360)
Q Consensus 341 ~~~~~~~L~~l~~~~~~R~~ 360 (360)
.++.|..+++++++|++
T Consensus 307 ---~~~~L~~l~~~~~~R~~ 323 (323)
T CHL00151 307 ---AKDSLIEIANFIINRLN 323 (323)
T ss_pred ---HHHHHHHHHHHHHhccC
Confidence 89999999999999974
No 5
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=2.1e-65 Score=493.54 Aligned_cols=287 Identities=32% Similarity=0.516 Sum_probs=262.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHH
Q 018156 47 LDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRR 126 (360)
Q Consensus 47 ~~~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (360)
.+.++.+.++++.|++.|++.+.+..|.+.+++.|++..| |||+||.|++++++++|.+ .+
T Consensus 3 ~~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKriRp~L~ll~~~~~~~~-----------------~~ 63 (319)
T TIGR02748 3 ADIYSFLQKDIDSIEKELEKAVQAEHPVLSEASLHLLEAG--GKRIRPVFVLLAGKFGDYD-----------------LD 63 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCC-----------------HH
Confidence 3457789999999999999999888899999999999988 9999999999999987653 24
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH------------
Q 018156 127 RQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI------------ 194 (360)
Q Consensus 127 ~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~------------ 194 (360)
....+|+++||||+||||||||+|+|++|||+||+|.+||++.|||+||||+++|++.+++.++++++
T Consensus 64 ~~~~~A~aiEliH~asLiHDDI~D~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 143 (319)
T TIGR02748 64 AIKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEVCR 143 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999887654332
Q ss_pred ---------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccC
Q 018156 195 ---------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 259 (360)
Q Consensus 195 ---------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~G 259 (360)
+++|++++++|||+||++||.+|++++|.+++..+.+++||.++|+||||+||++||+++++.+|
T Consensus 144 Gq~~~~~~~~~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~G 223 (319)
T TIGR02748 144 GEIEQIKDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELG 223 (319)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhC
Confidence 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhccCcccHHHHHHhhhCh---HHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 018156 260 KASLTDLRNGIITAPILFAMEEFP---QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPET 336 (360)
Q Consensus 260 K~~g~Dl~egk~Tlp~l~al~~~~---~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~ 336 (360)
||.++||++||+|+|++++++..+ .+..++... ++++++++++++.++|++++|+.++++|.++|.+.|+.||++
T Consensus 224 K~~~~Dl~~gk~Tlp~l~al~~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~ 301 (319)
T TIGR02748 224 KPAGGDLLQGNVTLPVLYAMEDPFLKKRIEQVLEET--TAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDG 301 (319)
T ss_pred CChhhHHhCCCchHHHHHHhcCcchhHHHHHHHcCC--CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999998643 233344322 567899999999999999999999999999999999999998
Q ss_pred CCccchHHHHHHHHHHHHHHhccC
Q 018156 337 HDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 337 ~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+ .++.|..+++++++|++
T Consensus 302 ~------~~~~L~~l~~~~~~R~~ 319 (319)
T TIGR02748 302 R------AKKPLQEIAKYIGKRKY 319 (319)
T ss_pred H------HHHHHHHHHHHHHhccC
Confidence 8 89999999999999975
No 6
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=5.6e-65 Score=490.62 Aligned_cols=290 Identities=30% Similarity=0.484 Sum_probs=262.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhH
Q 018156 46 HLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLR 125 (360)
Q Consensus 46 ~~~~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (360)
+.+.+..+..+++.|++.|.+.+.+..|.+.++..|.+..| |||+||.|++++++++|++ .
T Consensus 3 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~~--GKrlRp~l~ll~~~~~g~~-----------------~ 63 (323)
T PRK10888 3 LEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIISGG--GKRIRPMIAVLAARAVGYQ-----------------G 63 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCC-----------------h
Confidence 34456788999999999999999988899999999999988 9999999999999998764 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH-----------
Q 018156 126 RRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI----------- 194 (360)
Q Consensus 126 ~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~----------- 194 (360)
+..+.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||++.|++.++...+.+++
T Consensus 64 ~~~~~~A~avEllH~asLiHDDI~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 143 (323)
T PRK10888 64 NAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIA 143 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccCCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999999999877654322
Q ss_pred ----------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcccc
Q 018156 195 ----------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASL 258 (360)
Q Consensus 195 ----------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~ 258 (360)
+++|++++.+|||+||++||.+|++++|.+++..+.+++||+++|+||||+||++||+++++.+
T Consensus 144 ~Gq~~d~~~~~~~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~ 223 (323)
T PRK10888 144 EGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETL 223 (323)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhh
Confidence 5789999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCccchhccCcccHHHHHHhhhC-hHHHHHHhcCC---CCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 018156 259 GKASLTDLRNGIITAPILFAMEEF-PQLRAFINSSS---DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLP 334 (360)
Q Consensus 259 GK~~g~Dl~egk~Tlp~l~al~~~-~~~~~~l~~~~---~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 334 (360)
|||.|+||++||+|||++++++.. ++.++.+.... ..+++++++.+++.++|++++++.++++|.++|++.|+.+|
T Consensus 224 GK~~g~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp 303 (323)
T PRK10888 224 GKNVGDDLNEGKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLP 303 (323)
T ss_pred CCCchhhhhcCCchHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999864 34444443222 23467899999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHhccC
Q 018156 335 ETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 335 ~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+++ .++.|..+++++++|++
T Consensus 304 ~~~------~~~~L~~l~~~~~~R~~ 323 (323)
T PRK10888 304 DTP------WREALIGLAHIAVQRDR 323 (323)
T ss_pred CCH------HHHHHHHHHHHHHhCcC
Confidence 998 89999999999999974
No 7
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.7e-64 Score=484.23 Aligned_cols=290 Identities=36% Similarity=0.512 Sum_probs=262.1
Q ss_pred CchhHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHH
Q 018156 49 PFSLVGDELSLISMRLRSMVV-AEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRR 127 (360)
Q Consensus 49 ~~~~~~~dl~~v~~~l~~~~~-~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
.+..+.++++.|++.|.+.+. +.++.+.+++.|.+.+| |||+||++++++++++|.+... . .+.
T Consensus 3 ~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~aG--GKrlRP~l~l~~~~~~~~~~~~------------~-~~~ 67 (322)
T COG0142 3 LLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAG--GKRLRPLLVLLAAEALGIDLET------------G-GND 67 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcC--CccHhHHHHHHHHHHcCCCccc------------c-hhh
Confidence 346788999999999999998 78889999999999999 9999999999999999832110 0 246
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC--hHHH-----------
Q 018156 128 QQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH--TEVI----------- 194 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~--~~~~----------- 194 (360)
+..+|++|||+|++|||||||||+|++|||+||+|.+||+..||++||+|++.||+++++.++ .+++
T Consensus 68 ~~~~aaavEliH~~SLiHDDvmD~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~ 147 (322)
T COG0142 68 ALDLAAAIELIHTASLIHDDLMDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLC 147 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999876 4332
Q ss_pred ---------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccC
Q 018156 195 ---------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 259 (360)
Q Consensus 195 ---------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~G 259 (360)
+++|++++++|||+||+++|.+|+++++++++..+.+++||+++|+||||+||++|+++|+.++|
T Consensus 148 ~GQ~lDl~~~~~~~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lG 227 (322)
T COG0142 148 GGQALDLAFENKPVTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELG 227 (322)
T ss_pred HhHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhC
Confidence 68899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhccCcccHHHHHHhhhChH-HHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 018156 260 KASLTDLRNGIITAPILFAMEEFPQ-LRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHD 338 (360)
Q Consensus 260 K~~g~Dl~egk~Tlp~l~al~~~~~-~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 338 (360)
|++|+|+++||+|||++++++..++ .. .+.......++++++++++.++|+++++..+++.|.++|++.|+.+|.++
T Consensus 228 K~~g~Dl~~gK~T~p~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~- 305 (322)
T COG0142 228 KPVGSDLKEGKPTLPVLLALEKANEDQK-LLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSE- 305 (322)
T ss_pred CCcchHHHcCCchHHHHHHHHcCchhhH-HHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCch-
Confidence 9999999999999999999998653 33 33333333339999999999999999999999999999999999999777
Q ss_pred ccchHHHHHHHHHHHHHHhccC
Q 018156 339 VDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 339 ~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
.++.|..+++++++|++
T Consensus 306 -----~~~~L~~la~~i~~R~~ 322 (322)
T COG0142 306 -----AKEALLELADFIIKRKY 322 (322)
T ss_pred -----HHHHHHHHHHHHHhccC
Confidence 99999999999999974
No 8
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.5e-61 Score=458.58 Aligned_cols=285 Identities=41% Similarity=0.574 Sum_probs=266.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhhcC-C-hhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhc-CCCCCCCCCcccchhhh
Q 018156 46 HLDPFSLVGDELSLISMRLRSMVVAE-V-PELASAAGYFFKEGVEGKKLCPTVILLMATALN-VCTPELSPNVLGNTLIL 122 (360)
Q Consensus 46 ~~~~~~~~~~dl~~v~~~l~~~~~~~-~-~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~-~~~~~~~~~~~~~~~~~ 122 (360)
..|..+.+..+++.+++.+...+... + +.+...++|.+..+ ||++||.+|+++|++++ +.
T Consensus 64 ~~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la~--gKr~rP~l~~~~~e~~~~g~--------------- 126 (384)
T KOG0776|consen 64 LFDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLAG--GKRVRPLLCLAACELVGSGD--------------- 126 (384)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHhc--ccccCchhhhhHHHhccccc---------------
Confidence 44666778899999999999988766 4 46778888999989 99999999999999998 43
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH------
Q 018156 123 DLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI------ 194 (360)
Q Consensus 123 ~~~~~~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~------ 194 (360)
...++.+|+++||||++||||||| ||++++|||+||.|..||+++|||+||||+++|++.|+.+.|+.++
T Consensus 127 --~~~q~~~A~i~EMIHtaSLIHDDv~~mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~a 204 (384)
T KOG0776|consen 127 --ESSQRSLAEIVEMIHTASLIHDDVPCMDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENPVVVELMASA 204 (384)
T ss_pred --cHHHHHHHHHHHHHHHHHHHhcCcccccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 236899999999999999999999 9999999999999999999999999999999999999999886443
Q ss_pred -------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018156 195 -------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDIL 249 (360)
Q Consensus 195 -------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDil 249 (360)
+++|..++.+|||+|++.+|++|++++|.++++++.+++||+++|++||+.||++
T Consensus 205 I~dLv~ge~~~~~~~~~~~d~~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDil 284 (384)
T KOG0776|consen 205 IADLVRGEFTQGLVAGEGLDLDDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDIL 284 (384)
T ss_pred HHHHHHhhhhcccccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7889999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 018156 250 DFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAA 329 (360)
Q Consensus 250 D~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~ 329 (360)
|++...+.+||+.|.|+..|+.|+|+++++++.|++++.+.+.+.++.+.+...+.+. ++..|..++++|.++|++.
T Consensus 285 dftkss~elGK~ag~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~---~v~~a~~la~~~~~~Al~~ 361 (384)
T KOG0776|consen 285 DFTKSSEELGKTAGKDLKAGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVP---GVALAKYLARRHNNKALEA 361 (384)
T ss_pred CcccchhhcCcchhhhhhhccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888888887 8999999999999999999
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHHhc
Q 018156 330 IDSLPETHDVDATNARTALVHITQKIITR 358 (360)
Q Consensus 330 L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 358 (360)
|+.||+++ +|++|+.|+..+++|
T Consensus 362 l~~~p~s~------ar~aL~~l~~~~~~r 384 (384)
T KOG0776|consen 362 LQSLPRSE------ARSALENLVLAVLTR 384 (384)
T ss_pred HhCCCCch------HHHHHHHHHHHHhcC
Confidence 99999999 999999999999887
No 9
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=2.5e-58 Score=439.77 Aligned_cols=253 Identities=28% Similarity=0.388 Sum_probs=225.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcC---ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHH
Q 018156 51 SLVGDELSLISMRLRSMVVAE---VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRR 127 (360)
Q Consensus 51 ~~~~~dl~~v~~~l~~~~~~~---~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
..+...++.|++.|.+.+... ++.+.+++.|++..| |||+||.|++++++++|.+ .+.
T Consensus 5 ~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~L~l~~~~~~g~~-----------------~~~ 65 (299)
T PRK10581 5 QQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLG--GKRLRPFLVYATGQMFGVS-----------------TNT 65 (299)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcC--cccHHHHHHHHHHHHhCCC-----------------HHH
Confidence 346678888999998887642 467899999999988 9999999999999999864 235
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCCh--------HHH---
Q 018156 128 QQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT--------EVI--- 194 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~--------~~~--- 194 (360)
...+|+++||+|+|||||||| ||+|++|||+||+|.+||++.|||+||+|++.|++.++....+ +.+
T Consensus 66 ~~~~A~avEliH~aSLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 145 (299)
T PRK10581 66 LDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISEL 145 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHH
Confidence 678999999999999999999 9999999999999999999999999999999999988764321 000
Q ss_pred -------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhhhhhh
Q 018156 195 -------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQRE-EVATLAFEYGKNLGLAYQLIDDI 248 (360)
Q Consensus 195 -------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~-~~~~~l~~~G~~lG~afQI~DDi 248 (360)
.++|++++.+|||+||++||.+|++++|.++ +..+.+++||.++|+||||+||+
T Consensus 146 ~~~~~~~~l~~GQ~ld~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDi 225 (299)
T PRK10581 146 ASASGIAGMCGGQALDLEAEGKQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDI 225 (299)
T ss_pred HHhcccchhhHhhHHHHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999864 57889999999999999999999
Q ss_pred hcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 018156 249 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAA 328 (360)
Q Consensus 249 lD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~ 328 (360)
+|++++++.+||+.|+|+++||+|||++++ +++++..+++|.++|.+
T Consensus 226 lD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~---------------------------------~e~a~~~a~~~~~~A~~ 272 (299)
T PRK10581 226 LDVVGDTATLGKRQGADQQLGKSTYPALLG---------------------------------LEQARKKARDLIDDARQ 272 (299)
T ss_pred ccccCChHHHCCCcchhhhcCCCCHHHHHH---------------------------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 36788999999999999
Q ss_pred HhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 329 AIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 329 ~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
.|+.+|.++. .++.|..|++++++|+|
T Consensus 273 ~l~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 273 SLDQLAAQSL-----DTSALEALANYIIQRDK 299 (299)
T ss_pred HHHhCcCCch-----hHHHHHHHHHHHHhccC
Confidence 9999998771 37899999999999986
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=7.8e-53 Score=395.54 Aligned_cols=227 Identities=42% Similarity=0.582 Sum_probs=210.3
Q ss_pred ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 018156 72 VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDD 151 (360)
Q Consensus 72 ~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~ 151 (360)
.+.+.+++.|++..| ||++||.+++++++++|++. .+.+..+|+++|++|+||||||||||+
T Consensus 3 ~~~l~~~~~~~~~~~--GK~~Rp~l~~~~~~~~g~~~----------------~~~~~~la~aiEllh~asLIhDDI~D~ 64 (259)
T cd00685 3 VELLREALRYLLLAG--GKRLRPLLVLLAARALGGPE----------------LEAALRLAAAIELLHTASLVHDDVMDN 64 (259)
T ss_pred chHHHHHHHHHHHcC--CccHhHHHHHHHHHHhCCCc----------------hHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 456889999998878 99999999999999998741 146789999999999999999999999
Q ss_pred CCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC---hHHH---------------------------HHHHHhh
Q 018156 152 ADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH---TEVI---------------------------MECYMQK 201 (360)
Q Consensus 152 s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~---~~~~---------------------------~~~Y~~~ 201 (360)
|.+|||+||+|.+||+..|||+||+|++.+++.++...+ .+++ +++|+++
T Consensus 65 s~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~ 144 (259)
T cd00685 65 SDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDTDVTEEEYLRI 144 (259)
T ss_pred CcccCCCCcHHHHhCcccHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999988765 3333 5789999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhh
Q 018156 202 TYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 281 (360)
Q Consensus 202 ~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~ 281 (360)
+.+|||+||+++|.+|+++++++++..+.+++||.++|++|||+||++|++++++.+||+.++||++||+|||+++++
T Consensus 145 ~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l-- 222 (259)
T cd00685 145 IRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL-- 222 (259)
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHHHhc
Q 018156 282 FPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 358 (360)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 358 (360)
++.++.|.++|+..|+.+|.+. .++.|..+++++.+|
T Consensus 223 ----------------------------------~~~~~~~~~~a~~~l~~~~~~~------~~~~l~~~~~~~~~r 259 (259)
T cd00685 223 ----------------------------------RELAREYEEKALEALKALPESP------AREALRALADFILER 259 (259)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHcC
Confidence 6889999999999999999887 788999999999887
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=1.1e-53 Score=401.54 Aligned_cols=223 Identities=36% Similarity=0.578 Sum_probs=196.9
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 018156 77 SAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRR 156 (360)
Q Consensus 77 ~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s~~RR 156 (360)
+++.|++..| ||++||.|++++++++|.+ .+.+..+|+++||||+||||||||+|+|++||
T Consensus 3 ~~~~~~~~~~--GK~~Rp~l~~~~~~~~~~~-----------------~~~~~~~a~avEliH~asLIhDDI~D~s~~RR 63 (260)
T PF00348_consen 3 EPARYYILRG--GKRIRPLLVLLAAEALGGD-----------------PEKAIPLAAAVELIHAASLIHDDIIDNSDLRR 63 (260)
T ss_dssp HHHHHHHHSS--SCHHHHHHHHHHHHHTTCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEET
T ss_pred HHHHHHhhCC--CccHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Confidence 3566777778 9999999999999999853 45789999999999999999999999999999
Q ss_pred CCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC--h--HHH-----------------------------HHHHHhhhh
Q 018156 157 GIGSLSSVMGNKLAILAGDLLISRALVALASLKH--T--EVI-----------------------------MECYMQKTY 203 (360)
Q Consensus 157 G~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~--~--~~~-----------------------------~~~Y~~~~~ 203 (360)
|+||+|.+||++.|||+||+|++.|++.++...+ + ... +++|+++++
T Consensus 64 G~pt~~~~~G~~~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~y~~i~~ 143 (260)
T PF00348_consen 64 GKPTVHKKFGNAIAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDKDPTEEEYLEIIR 143 (260)
T ss_dssp TEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTSHHHHHHHHH
T ss_pred CCccccccccccchhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccccccHHHHHHHHh
Confidence 9999999999999999999999999999988761 1 100 589999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhCh
Q 018156 204 NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP 283 (360)
Q Consensus 204 ~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~ 283 (360)
+|||+||++||++|++++|.+++..+.+++||.++|+||||+||++|++++++.+||+.|+||++||+|||+++++++.+
T Consensus 144 ~KTg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~ 223 (260)
T PF00348_consen 144 LKTGSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAR 223 (260)
T ss_dssp HHTHHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -HHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHH
Q 018156 284 -QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELA 319 (360)
Q Consensus 284 -~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a 319 (360)
+.++++... ....+.+.+.+.+..++.+++++.++
T Consensus 224 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 224 EELRELLQEA-YGKEDSEEALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HHHHHHHHHH-HHHSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHHhhc
Confidence 455555543 33446677788888888888887765
No 12
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.3e-39 Score=298.16 Aligned_cols=291 Identities=19% Similarity=0.107 Sum_probs=241.2
Q ss_pred hHHHHHHHHHHHHHHHhhc----------CChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhh
Q 018156 52 LVGDELSLISMRLRSMVVA----------EVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLI 121 (360)
Q Consensus 52 ~~~~dl~~v~~~l~~~~~~----------~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~ 121 (360)
....++.++...+-+.+.. ..+.+.....|... | ||..|+..++.+.+++.++.. ..
T Consensus 7 ~~k~~f~~~f~~~vr~i~~~~~~~~~~~da~~~~~~~L~yN~~-G--GK~nRgl~vv~s~~~L~~~~~----------l~ 73 (347)
T KOG0711|consen 7 QEKQDFLQVFPVLVRVLTEDLMAHGESGDATEWLKEVLDYNVI-G--GKLNRGLSVVDSFKALVEPRK----------LD 73 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccCc-c--cccccchhHHHHHHHhcCccC----------CC
Confidence 3455555555554444332 12467888888865 8 999999999999999976422 12
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccch-HHHHHHHHHHHHHHHHHHHcCCC-----h----
Q 018156 122 LDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGN-KLAILAGDLLISRALVALASLKH-----T---- 191 (360)
Q Consensus 122 ~~~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~-~~Ail~Gd~L~~~a~~~l~~~~~-----~---- 191 (360)
++....+..++|+||++++++||.|||||+|.+|||+||||.+-|+ -.|||.+-+|-+....+|.+... .
T Consensus 74 ~~~~~~a~~lGw~vElLQaffLiaDDIMDnS~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~e 153 (347)
T KOG0711|consen 74 EEELQLALILGWCVELLQAFFLVADDIMDNSKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVE 153 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHH
Confidence 3445678889999999999999999999999999999999999999 58999998888766666663211 0
Q ss_pred ---HHH----------------------HHHHHhhhhhhhHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhh
Q 018156 192 ---EVI----------------------MECYMQKTYNKTAAL-VSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQL 244 (360)
Q Consensus 192 ---~~~----------------------~~~Y~~~~~~KTa~L-~~~~~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI 244 (360)
++. ++.|..|+.+|||.+ |.+|.++|..++| .+.+.......+...+|..||+
T Consensus 154 lf~ev~f~T~lGdllt~~~~~~~ls~fsl~~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQv 233 (347)
T KOG0711|consen 154 LFHEVTFQTELGDLLTTPEGNKDLSKFSLEKYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQV 233 (347)
T ss_pred HHHHHHHHHhhhccccCcccchhHhhhhHHHHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhc
Confidence 011 788999999999999 9999999999998 4566777789999999999999
Q ss_pred hhhhhcccCCccccCCCccchhccCcccHHHHHHhhh-ChHHHHHHhcCCC--CchhHHHHHHHHHhcchHHHHHHHHHH
Q 018156 245 IDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE-FPQLRAFINSSSD--NPANVDVILEYLGKSHGIQRTTELALK 321 (360)
Q Consensus 245 ~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~-~~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~ 321 (360)
+||+||++||++.+|| .|+||+++||||.+++|++. ++++.+++...+. +++.++.+..+..+.+..+........
T Consensus 234 QDDYLd~fgDp~vtgk-iGtDIqDnKCsWlv~~al~~~~~eq~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~yE~~ 312 (347)
T KOG0711|consen 234 QDDYLDCFGDPEVTGK-IGTDIQDNKCSWLVVKALQRASAEQYKILFENYGKPEAEAVAKVKALYKELHLPALFIEYEEG 312 (347)
T ss_pred chHHHHhcCChhhcCC-CCCccccCceeeehHHHHhhcCHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHhhhh
Confidence 9999999999999999 79999999999999999998 5688899988776 557789999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 322 HASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 322 ~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
...+..+.|+.++.+..+ .+..+..++.++.+|++
T Consensus 313 ~~~~Ik~~I~~~~~~~~~----~~~v~t~fl~kiykr~k 347 (347)
T KOG0711|consen 313 SYKKIKKLISQVDEDTGV----KVKVGTSFLNKIYKRSK 347 (347)
T ss_pred HHHHHHHHHHHccCCCcc----hhhhHHHHHHHHHhhcC
Confidence 999999999999877642 56677789999999975
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=8.4e-39 Score=295.52 Aligned_cols=208 Identities=41% Similarity=0.580 Sum_probs=182.4
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccc-cchHHH
Q 018156 92 LCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSV-MGNKLA 170 (360)
Q Consensus 92 ~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~-~G~~~A 170 (360)
+||.+++++++++|+. .+.+..+++++|+||++++|||||+|++..|||+||+|.+ ||+..|
T Consensus 1 ~r~~~~~~~~~~~~~~-----------------~~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~~a 63 (236)
T cd00867 1 SRPLLVLLLARALGGD-----------------LEAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALA 63 (236)
T ss_pred CcHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHhHH
Confidence 5999999999999864 3468899999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHH---------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCC
Q 018156 171 ILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQ 223 (360)
Q Consensus 171 il~Gd~L~~~a~~~l~~~~~~~~~---------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~ 223 (360)
+++||++++.++..+.+....+.. +++|.+++++|||++|+.+|.+|+++++.
T Consensus 64 i~~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~ 143 (236)
T cd00867 64 ILAGDYLLARAFQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA 143 (236)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc
Confidence 999999999999988875432211 67899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHH
Q 018156 224 REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVIL 303 (360)
Q Consensus 224 ~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~ 303 (360)
+++..+.+.+||.++|+||||.||++|+++|.+.+|| .++||++||+|||++++
T Consensus 144 ~~~~~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~------------------------- 197 (236)
T cd00867 144 DDEQAEALKDYGRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA------------------------- 197 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH-------------------------
Confidence 9888999999999999999999999999999999999 99999999999999995
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHHHhc
Q 018156 304 EYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 358 (360)
Q Consensus 304 ~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 358 (360)
.+.+..+.+++.+.+..+++... ..+..+..++.++.+|
T Consensus 198 ------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r 236 (236)
T cd00867 198 ------------RERAAEYAEEAYAALEALPPSLP----RARRALIALADFLYRR 236 (236)
T ss_pred ------------HHHHHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHHHHhC
Confidence 45566666777777777665431 1457788888888776
No 14
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5e-37 Score=272.49 Aligned_cols=242 Identities=24% Similarity=0.318 Sum_probs=217.0
Q ss_pred hhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 018156 73 PELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDA 152 (360)
Q Consensus 73 ~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s 152 (360)
..+.++..|++..+ ||.+|.-|.++..+++..+ .++...+..++||+|++||+.|||.|+|
T Consensus 21 ~ill~Py~yilq~P--GKqfR~~L~~afNhwl~~P-----------------~dkLaii~~ivemLHNsSLLIDDIEDNs 81 (322)
T KOG0777|consen 21 SILLKPYNYILQKP--GKQFRLNLIVAFNHWLNLP-----------------KDKLAIISQIVEMLHNSSLLIDDIEDNS 81 (322)
T ss_pred HHHhchHHHHHhCc--hHHHHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHHhccceeeccccccc
Confidence 35778899999977 9999999999999999865 2366778999999999999999999999
Q ss_pred CCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH----------------------------HHHHHhhhhh
Q 018156 153 DTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI----------------------------MECYMQKTYN 204 (360)
Q Consensus 153 ~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~----------------------------~~~Y~~~~~~ 204 (360)
.+|||.|+.|..||++..||+++|++.+|++.+..+..++.+ .++|..|+..
T Consensus 82 ~LRRG~pvaHsIyGvpStINtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQGldIYWRD~~tcPtee~Yk~Mv~~ 161 (322)
T KOG0777|consen 82 PLRRGQPVAHSIYGVPSTINTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQGLDIYWRDFLTCPTEEMYKNMVMN 161 (322)
T ss_pred hhhcCCcchhhhccCcchhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCcceeeeccCcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999988776544 7899999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhCh-
Q 018156 205 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP- 283 (360)
Q Consensus 205 KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~- 283 (360)
|||.||.++.++.-.++...++. ..+-.-+|+.|||+|||+++..-+..-.|..+.||.|||.++|+++|+...+
T Consensus 162 KTGGLF~La~rLMqlfS~~kedl----~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~q 237 (322)
T KOG0777|consen 162 KTGGLFRLALRLMQLFSHHKEDL----VPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKGQ 237 (322)
T ss_pred hcccHHHHHHHHHHHHHhcchhH----HHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCCc
Confidence 99999999999999999766554 4455789999999999999988888888999999999999999999997643
Q ss_pred --HHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 284 --QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 284 --~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
++..++.++..+-+....++.++++.|+++|++....+...+|...|+....++
T Consensus 238 ~~Qvl~ILrqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~Np 293 (322)
T KOG0777|consen 238 TEQVLRILRQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGENP 293 (322)
T ss_pred hHHHHHHHHHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 566777777777777788999999999999999999999999999999998887
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.85 E-value=1.6e-19 Score=163.69 Aligned_cols=185 Identities=35% Similarity=0.458 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccc---cchHHHHHHHHHHHHHHHHHHHcCCChHHH-----------
Q 018156 129 QCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSV---MGNKLAILAGDLLISRALVALASLKHTEVI----------- 194 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~---~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~----------- 194 (360)
..++.++|.+|+++++||||+|++..|+|.|+++.. +|...+++.|+.++..++..+.....+...
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLDLL 92 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999988 999999999999999999888765332111
Q ss_pred ----------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcccc
Q 018156 195 ----------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASL 258 (360)
Q Consensus 195 ----------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~ 258 (360)
+++|+++.+.|||.++...|..++...+.+......+..++.++|++||+.||+.|+..+....
T Consensus 93 ~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~ 172 (243)
T cd00385 93 EGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAERG 172 (243)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 5789999999999999999999998888777778889999999999999999999998775331
Q ss_pred CCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 259 GKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 259 GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
+|++|+|.+++.+........ ..+..++.++.+...+..+.+++++.+..+....
T Consensus 173 ---------~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
T cd00385 173 ---------EGKCTLPVLYALEYGVPAEDL---------------LLVEKSGSLEEALEELAKLAEEALKELNELILSL 227 (243)
T ss_pred ---------CCchHHHHHHHHHhCChhhHH---------------HHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 589999999988764321111 1677888999999999999999999998887654
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=96.58 E-value=0.041 Score=50.16 Aligned_cols=78 Identities=23% Similarity=0.188 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---HHHHHhhhh
Q 018156 127 RQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---MECYMQKTY 203 (360)
Q Consensus 127 ~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~---~~~Y~~~~~ 203 (360)
.....+.++-++|+|...||.|-+ +..+.+...- .....||+|||.-++-+.+|+..++...+ -+...++..
T Consensus 34 ~~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~~k----~RQLtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~eiNE 108 (212)
T PF07307_consen 34 EAERYALATMLVQIALDTHDEVDN-AGDESEESSK----ERQLTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKEINE 108 (212)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc-ccccccHHHH----hhhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 566788889999999999999966 3332222211 11479999999999999999999887655 233445556
Q ss_pred hhhHHH
Q 018156 204 NKTAAL 209 (360)
Q Consensus 204 ~KTa~L 209 (360)
.|+..+
T Consensus 109 ~K~~ly 114 (212)
T PF07307_consen 109 LKMSLY 114 (212)
T ss_pred HHHHHH
Confidence 666554
No 17
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=94.03 E-value=1.8 Score=40.66 Aligned_cols=86 Identities=27% Similarity=0.249 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhc
Q 018156 230 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKS 309 (360)
Q Consensus 230 ~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~ 309 (360)
....++.++|+|+|+.|=+.|+ +.|+..|++.+|.=..-+..-...+++. .. ..+.+..
T Consensus 143 ~~~~~A~~lG~AlqltnilRdv-----------~eD~~~gR~YlP~d~l~~~gv~~~~l~~-~~-~~~~~~~-------- 201 (265)
T cd00683 143 AALERARALGLALQLTNILRDV-----------GEDARRGRIYLPREELARFGVTLEDLLA-PE-NSPAFRA-------- 201 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHccCCCcCCHHHHHHcCCCHHHHcC-CC-CCHHHHH--------
Confidence 3567889999999999988886 5788889999987654433212222222 11 1122222
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 310 HGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 310 g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
.+.+....++.+...|...+..+|...
T Consensus 202 -~~~~~~~~A~~~~~~a~~~~~~lp~~~ 228 (265)
T cd00683 202 -LLRRLIARARAHYREALAGLAALPRRS 228 (265)
T ss_pred -HHHHHHHHHHHHHHHHHHhHHhCCHhh
Confidence 245566779999999999999999543
No 18
>PLN02632 phytoene synthase
Probab=92.42 E-value=1.3 Score=43.27 Aligned_cols=118 Identities=13% Similarity=0.019 Sum_probs=68.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCccc
Q 018156 195 MECYMQKTYNKTAALVSNSCKAVAYLSGQR--EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIIT 272 (360)
Q Consensus 195 ~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~--~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~T 272 (360)
++++..-+++-.|.+..+.+.+ ++..+ ....+.+...+.++|+|+|+.|=+.|+ +.|+..|++-
T Consensus 161 ~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILRDv-----------~eD~~~GRvY 226 (334)
T PLN02632 161 FDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILRDV-----------GEDARRGRVY 226 (334)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCcee
Confidence 3444443444445554444443 33222 122244677899999999999988886 5788999999
Q ss_pred HHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 273 APILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 273 lp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
+|.=..-+..=...+++... .++ .+. . .+.+....++.|+++|...+..+|...
T Consensus 227 LP~e~L~~~Gv~~edl~~~~-~~~-~~~---~------l~~~~~~~Ar~~~~~a~~~l~~lp~~~ 280 (334)
T PLN02632 227 LPQDELAQFGLTDEDIFAGK-VTD-KWR---A------FMKFQIKRARMYFAEAEEGVSELDPAS 280 (334)
T ss_pred CCHHHHHHcCCCHHHHhcCC-CCH-HHH---H------HHHHHHHHHHHHHHHHHHhHhhCCHHh
Confidence 98755333221112222221 121 111 1 133444678899999999999998654
No 19
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=91.68 E-value=2 Score=40.20 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=67.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccch-hccCcccH
Q 018156 195 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTD-LRNGIITA 273 (360)
Q Consensus 195 ~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~D-l~egk~Tl 273 (360)
++++..-+++-+|++..+.+.+...- .+. .....++.++|.|+|+.|=+.|+ +.| +..|++-+
T Consensus 112 ~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nilRd~-----------~~D~~~~gR~yl 175 (267)
T PF00494_consen 112 FADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNILRDI-----------PEDALRRGRIYL 175 (267)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHHHTH-----------HHH-HHTT---S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHHHHh-----------HHHHHhcccccC
Confidence 44555555566676665555433221 222 34677889999999999977775 578 78999999
Q ss_pred HHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 274 PILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 274 p~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
|.=..-+..=...+++... .....+.. .+......++.+.++|...+..+|+..
T Consensus 176 P~d~l~~~gv~~~dl~~~~-~~~~~~~~---------~~~~~~~~A~~~l~~a~~~~~~l~~~~ 229 (267)
T PF00494_consen 176 PLDDLRRFGVTPEDLLAGR-PRSERLRA---------LIRELAARARAHLDEARAGLSALPPPR 229 (267)
T ss_dssp -HHHHHHTTSSHHHHHHHG--GGHHHHH---------HHHHHHHHHHHHHHHHHHGGGGS--TT
T ss_pred CchhHHHcCCCHHHHHhcc-cCCHHHHH---------HHHHHHHHHHHHHHHHHHHHHHcCCHh
Confidence 9866543321111222111 01111222 235667889999999999999996554
No 20
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=91.36 E-value=3.7 Score=38.75 Aligned_cols=140 Identities=18% Similarity=0.070 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCC---CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---------HHH
Q 018156 130 CIAEITEMIHVASLIHDDVLDDAD---TRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---------MEC 197 (360)
Q Consensus 130 ~lA~~vEllH~asLihDDI~D~s~---~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~---------~~~ 197 (360)
-...++=++|.+.-+.+|+.|-+. .|..+|-+.-+...+.+...+-.+...+.-...-+ +.... .=-
T Consensus 41 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~ 119 (279)
T PRK12884 41 LGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLI-SPLAFLVVILVSVLGIL 119 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 344566799999999999977443 36667766666666777666655554444322222 22211 112
Q ss_pred HHhhhhhhh--HH-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCc
Q 018156 198 YMQKTYNKT--AA-----LVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGI 270 (360)
Q Consensus 198 Y~~~~~~KT--a~-----L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk 270 (360)
|--..++.| +. .+..+...|....+......=.+.-+.--..+.+++..|+.|.. +|-+.|+
T Consensus 120 Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e-----------~D~~~G~ 188 (279)
T PRK12884 120 YNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVE-----------GDRLRGA 188 (279)
T ss_pred HHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hHHHcCC
Confidence 321112222 11 12333344444333322212223333445556778888888874 5667899
Q ss_pred ccHHHHHHhhh
Q 018156 271 ITAPILFAMEE 281 (360)
Q Consensus 271 ~Tlp~l~al~~ 281 (360)
.|+|+.+--+.
T Consensus 189 ~Tl~v~~G~~~ 199 (279)
T PRK12884 189 RTLAILYGEKI 199 (279)
T ss_pred eeechHhcHHH
Confidence 99999886543
No 21
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=91.08 E-value=4.7 Score=37.89 Aligned_cols=113 Identities=10% Similarity=-0.050 Sum_probs=66.4
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHH
Q 018156 196 ECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPI 275 (360)
Q Consensus 196 ~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~ 275 (360)
+++..-+++-.|.+..+.+. +++..+++ ...++.++|+|+|+.|=+.|+ +.|+..|++-+|.
T Consensus 108 ~eL~~Y~~~vAg~vg~l~~~---i~g~~~~~----~~~~A~~lG~AlQltniLRDl-----------~eD~~~gR~YLP~ 169 (266)
T TIGR03464 108 AELLDYCRYSANPVGRLVLD---LYGASDPE----NVALSDAICTALQLINFWQDV-----------GVDYRKGRVYLPR 169 (266)
T ss_pred HHHHHHHHHhHHHHHHHHHH---HcCCCChh----HHHHHHHHHHHHHHHHHHHhh-----------HHHHhcCCccCCH
Confidence 33333334444444444433 33333333 246788999999999977775 5788889999986
Q ss_pred HHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 276 LFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 276 l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
=..-+.+=...+++... .+ ..+.. .+......++.++.+|...+..+|...
T Consensus 170 ~~l~~~Gv~~edl~~~~-~~-~~~~~---------~~~~~~~~A~~~~~~a~~~~~~lp~~~ 220 (266)
T TIGR03464 170 DDLARFGVSEEDLAAGR-AT-PALRE---------LMAFEVSRTRALLDRGAPLAARVDGRL 220 (266)
T ss_pred HHHHHcCCCHHHHhcCC-CC-HHHHH---------HHHHHHHHHHHHHHHHHHhHHhCCHhh
Confidence 55433221122222221 11 22222 245556778999999999999998653
No 22
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=90.80 E-value=3.3 Score=38.88 Aligned_cols=114 Identities=18% Similarity=0.082 Sum_probs=68.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHH
Q 018156 195 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 274 (360)
Q Consensus 195 ~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp 274 (360)
++++..-++.-.|.+..+.+.+ ++..++ .....+.++|+|+|+.|=+.|+ +.|+..|++.+|
T Consensus 106 ~~dL~~Y~~~vAg~vg~l~~~l---lg~~~~----~~~~~a~~lG~AlqltnilRdv-----------~eD~~~gR~ylP 167 (266)
T TIGR03465 106 FAELDLYCDRVAGAVGRLSARI---FGATDA----RTLEYAHHLGRALQLTNILRDV-----------GEDARRGRIYLP 167 (266)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH---hCCCCh----hHHHHHHHHHHHHHHHHHHHHh-----------HHHHhCCCeecC
Confidence 4444444444455555554443 333332 3467789999999999977776 578889999998
Q ss_pred HHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 275 ILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 275 ~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
.=..-+.+-...+++. ...+ +.+.. .+.+-...++.|+++|...+..+|...
T Consensus 168 ~~~l~~~gv~~~~l~~-~~~~-~~~~~---------~~~~l~~~A~~~l~~a~~~~~~~p~~~ 219 (266)
T TIGR03465 168 AEELQRFGVPAADILE-GRYS-PALAA---------LCRFQAERARAHYAEADALLPACDRRA 219 (266)
T ss_pred HHHHHHcCCCHHHhcC-CCCC-HHHHH---------HHHHHHHHHHHHHHHHHHhhhhCCHhh
Confidence 7554333211122222 1112 12222 234555678888899999888888643
No 23
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=89.59 E-value=12 Score=35.35 Aligned_cols=139 Identities=17% Similarity=0.117 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCC---CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---------HHHH
Q 018156 131 IAEITEMIHVASLIHDDVLDDAD---TRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---------MECY 198 (360)
Q Consensus 131 lA~~vEllH~asLihDDI~D~s~---~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~---------~~~Y 198 (360)
+..+.=++|.++.+.+|+.|-+. .|+.+|-..-....+.|...+-.+...++-..... +.... .--|
T Consensus 43 ~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~~l-~~~~~~~~~~~~~~~~~Y 121 (276)
T PRK12882 43 AFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLL-PPLCLAIALFNSLLLVLY 121 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence 34456688999999999977443 46888888878888888888877776665433322 22111 1234
Q ss_pred HhhhhhhhH--HH-----HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCc
Q 018156 199 MQKTYNKTA--AL-----VSNSCKAVAYLSGQR-EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGI 270 (360)
Q Consensus 199 ~~~~~~KTa--~L-----~~~~~~~ga~lag~~-~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk 270 (360)
-...+.++. .+ .......|+...+.+ ....-.+.-+.-..-+++-+.+|+.|.. +|.+.|.
T Consensus 122 t~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e-----------~D~~~G~ 190 (276)
T PRK12882 122 AETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLLALLVLFALAALATLAREIIKDVEDIE-----------GDRAEGA 190 (276)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------hHHHcCC
Confidence 332222222 11 111112233333322 2111122222223345667777887764 4667899
Q ss_pred ccHHHHHHhhh
Q 018156 271 ITAPILFAMEE 281 (360)
Q Consensus 271 ~Tlp~l~al~~ 281 (360)
.|+|+.+-.+.
T Consensus 191 ~tlpv~~G~~~ 201 (276)
T PRK12882 191 RTLPILIGVRK 201 (276)
T ss_pred ccccHHhhHHH
Confidence 99999986654
No 24
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=84.75 E-value=9 Score=37.53 Aligned_cols=85 Identities=24% Similarity=0.287 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcc
Q 018156 231 AFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSH 310 (360)
Q Consensus 231 l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g 310 (360)
..+++..+|+|+|+.|=+.|+ ++|+.+|++=||.=..-+......++. .++.-+...+
T Consensus 166 ~~~~A~~lG~aLQlTNIlRDv-----------~ED~~~GR~YlP~e~l~~~g~~~~dl~-----~~~~~~~~~~------ 223 (336)
T TIGR01559 166 SEALSNSMGLFLQKTNIIRDY-----------LEDINEGRMFWPREIWSKYAKKLGDFK-----KPENSDKALQ------ 223 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----------HhHHhCCCCCCCHHHHHHcCCCHHHhc-----CccccHHHHH------
Confidence 367899999999999988886 578888999998653322222222221 1222222222
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 311 GIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 311 ~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
.+..-...|..|++.|...+..+++..
T Consensus 224 ~l~~lv~~A~~~~~~al~yl~~l~~~~ 250 (336)
T TIGR01559 224 CLNELVTNALHHATDCLTYLSRLRDQS 250 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 345566788889999999999996654
No 25
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=81.58 E-value=48 Score=31.27 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCC---CCCCCCcccccchHHHHHHHHHHHHHHHH
Q 018156 130 CIAEITEMIHVASLIHDDVLDDADT---RRGIGSLSSVMGNKLAILAGDLLISRALV 183 (360)
Q Consensus 130 ~lA~~vEllH~asLihDDI~D~s~~---RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~ 183 (360)
....++=++|.+.-+..|+.|-+.- ++.+|-+.-+...+.|...+-.+...++-
T Consensus 41 l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 97 (279)
T PRK09573 41 LAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLI 97 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHH
Confidence 3444566899999999999885543 36788888788888888888777766663
No 26
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=77.68 E-value=33 Score=32.51 Aligned_cols=138 Identities=17% Similarity=0.085 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCC----CC-CCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---------H
Q 018156 130 CIAEITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---------M 195 (360)
Q Consensus 130 ~lA~~vEllH~asLihDDI~D~s~----~R-RG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~---------~ 195 (360)
.+..++=++|.+..+..|+.|.+. .| +.+|-..-+...+.|...+-.+...++-..... ++... .
T Consensus 44 ~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l-~~~~~~l~~~~~~~~ 122 (281)
T TIGR01474 44 LFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQL-NPLTILLGVASLALV 122 (281)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 344455688999999999977432 23 367877777788888887777666555433322 22211 1
Q ss_pred HHHHhhhhhhh-------HHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhc
Q 018156 196 ECYMQKTYNKT-------AALVSNSCKAVAYLSGQREEVAT-LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLR 267 (360)
Q Consensus 196 ~~Y~~~~~~KT-------a~L~~~~~~~ga~lag~~~~~~~-~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~ 267 (360)
=-|- ..++.| |..++.+..+|......+....- .+.-..--....|.+..++.|.. +|.+
T Consensus 123 ~~Y~-~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e-----------~D~~ 190 (281)
T TIGR01474 123 ATYP-FMKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKE-----------DDIK 190 (281)
T ss_pred HHhc-hhcccccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------hHHH
Confidence 1221 111112 22233444444433222221111 12212222233445556666653 5778
Q ss_pred cCcccHHHHHHhh
Q 018156 268 NGIITAPILFAME 280 (360)
Q Consensus 268 egk~Tlp~l~al~ 280 (360)
.|+.|+|+.+-.+
T Consensus 191 ~G~~tlpv~~G~~ 203 (281)
T TIGR01474 191 IGVKSTALRFGDN 203 (281)
T ss_pred cCCCcccHHhhhh
Confidence 8999999998644
No 27
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=72.19 E-value=69 Score=30.91 Aligned_cols=50 Identities=12% Similarity=-0.009 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhccCCCCCCC---CCCCCcccccchHHHHHHHHHHHHHHH
Q 018156 133 EITEMIHVASLIHDDVLDDADTR---RGIGSLSSVMGNKLAILAGDLLISRAL 182 (360)
Q Consensus 133 ~~vEllH~asLihDDI~D~s~~R---RG~pt~~~~~G~~~Ail~Gd~L~~~a~ 182 (360)
.+.=++|.++-+..|+.|.+.-| +.+|...-+...+.+...+-.++..++
T Consensus 72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 33457899999999999965534 556777777778888777766665555
No 28
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=71.44 E-value=97 Score=29.65 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcc
Q 018156 231 AFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSH 310 (360)
Q Consensus 231 l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g 310 (360)
.......+|.|+|+.|=+.|+ +.|...|+.=+|.=...+..-...++...... +.+ .+
T Consensus 154 ~~~~a~~lG~A~QlvNilRdv-----------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~--~~~---~~------ 211 (288)
T COG1562 154 TRAYARGLGLALQLVNILRDV-----------GEDRRRGRVYLPAEELARFGVSEADLLAGRVD--DAF---RE------ 211 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-----------HHHHhCCcccCCHHHHHHhCCCHHHHHcccch--hHH---HH------
Confidence 444555699999999988876 68888999988854332222222222221111 122 22
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 018156 311 GIQRTTELALKHASLAAAAIDSLPETHD 338 (360)
Q Consensus 311 ~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 338 (360)
.+++-...++.+...|...|..||....
T Consensus 212 ~~~~~~~~ar~~~~~a~~~~~~lp~~~~ 239 (288)
T COG1562 212 LMRFEADRARDHLAEARRGLPALPGRAQ 239 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhCCcccc
Confidence 3466678899999999999999998763
No 29
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=68.59 E-value=1e+02 Score=29.37 Aligned_cols=54 Identities=19% Similarity=0.026 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCC----CC-CCCCCcccccchHHHHHHHHHHHHHHHHH
Q 018156 131 IAEITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLISRALVA 184 (360)
Q Consensus 131 lA~~vEllH~asLihDDI~D~s~----~R-RG~pt~~~~~G~~~Ail~Gd~L~~~a~~~ 184 (360)
...++=++|++..+..|+.|.+. .| |.+|-+.-+-..+.|++.+-.+...++-.
T Consensus 51 ~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l 109 (290)
T PRK12870 51 IILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGL 109 (290)
T ss_pred HHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 34455688999999999977543 23 36777777778888888777776655533
No 30
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=68.51 E-value=78 Score=29.76 Aligned_cols=50 Identities=18% Similarity=0.070 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhccCCCCC---CCCCCCCcccccchHHHHHHHHHHHHHHH
Q 018156 133 EITEMIHVASLIHDDVLDDAD---TRRGIGSLSSVMGNKLAILAGDLLISRAL 182 (360)
Q Consensus 133 ~~vEllH~asLihDDI~D~s~---~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~ 182 (360)
.++=+.|.+.-+..|+.|-.. .|+.+|-+.-+...+.|...+-.+...+.
T Consensus 44 ~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~ 96 (277)
T PRK12883 44 LVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGL 96 (277)
T ss_pred HHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 345566788999999977433 45667777666777777776666655554
No 31
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=67.88 E-value=1.1e+02 Score=28.75 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=26.9
Q ss_pred HHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhC
Q 018156 237 NLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF 282 (360)
Q Consensus 237 ~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~ 282 (360)
-+-.+.++..|+.|..+ |-+.|+.|+|+.+-.++.
T Consensus 172 l~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~lG~~~t 206 (285)
T PRK12872 172 LKSFIREIVFDIKDIEG-----------DRKSGLKTLPIVLGKERT 206 (285)
T ss_pred HHHHHHHHHHhcccchh-----------HHHcCCcccchhcchHHH
Confidence 34567889999998854 557899999999976543
No 32
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=65.93 E-value=7.5 Score=30.05 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhh
Q 018156 224 REEVATLAFEYGKNLGLAYQLIDD 247 (360)
Q Consensus 224 ~~~~~~~l~~~G~~lG~afQI~DD 247 (360)
.++..+.+-+||..+|-.||++==
T Consensus 14 Eet~~e~llRYGLf~GAIFQliCi 37 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLICI 37 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888999999999998753
No 33
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=65.19 E-value=82 Score=30.21 Aligned_cols=46 Identities=15% Similarity=0.085 Sum_probs=28.5
Q ss_pred HHHHHHhhhccCCCCC-----CC---------CCCCCcccccchHHHHHHHHHHHHHHHHH
Q 018156 138 IHVASLIHDDVLDDAD-----TR---------RGIGSLSSVMGNKLAILAGDLLISRALVA 184 (360)
Q Consensus 138 lH~asLihDDI~D~s~-----~R---------RG~pt~~~~~G~~~Ail~Gd~L~~~a~~~ 184 (360)
.|.+ -+..|+.|... .| +.+|....+...+.|...+-.+...++-.
T Consensus 54 ~~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 54 FEAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL 113 (297)
T ss_pred HHHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4555 48888865321 12 46777776777777777776666555443
No 34
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=64.90 E-value=1.3e+02 Score=28.83 Aligned_cols=50 Identities=12% Similarity=-0.065 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhccCCCCCC---CCCCCCcccccchHHHHHHHHHHHHHHH
Q 018156 133 EITEMIHVASLIHDDVLDDADT---RRGIGSLSSVMGNKLAILAGDLLISRAL 182 (360)
Q Consensus 133 ~~vEllH~asLihDDI~D~s~~---RRG~pt~~~~~G~~~Ail~Gd~L~~~a~ 182 (360)
.+.=++|.++-++.|+.|.+.- .|.+|...-+...+.+...+-.++..++
T Consensus 61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 4556899999999999886532 3456666666677777776655554443
No 35
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=64.51 E-value=1.4e+02 Score=28.84 Aligned_cols=140 Identities=14% Similarity=-0.036 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC---CCCC--CCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---------H
Q 018156 130 CIAEITEMIHVASLIHDDVLDDA---DTRR--GIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---------M 195 (360)
Q Consensus 130 ~lA~~vEllH~asLihDDI~D~s---~~RR--G~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~---------~ 195 (360)
-...+.=++|.++-+..|+.|.+ ..+| .+|...-+...+.|+..+-.+...++-.+... +.... .
T Consensus 76 l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~-~~~~~~l~~~~~~~~ 154 (314)
T PRK12878 76 LFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQF-NWFAIALGIASLAIV 154 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence 34455668999999999997743 2344 57888888888888777766655554443322 22111 1
Q ss_pred HHHHhhhhhhhH-------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhcc
Q 018156 196 ECYMQKTYNKTA-------ALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRN 268 (360)
Q Consensus 196 ~~Y~~~~~~KTa-------~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~e 268 (360)
--|- ..++.|. .-+..+..+|......+-.. ..+ +-.-.++.+|+--|..--..| .-.|-+.
T Consensus 155 ~~Y~-~~KR~t~~~~~~~Gl~~~~~~l~g~~a~~g~~~~-~~~--~l~~~~~~w~~~~~~~~a~~D-------~e~D~~a 223 (314)
T PRK12878 155 AAYP-FMKRITWWPQFFLGLAFSWGALMGWAAHFGSLSL-AAV--LLYAGSIAWTIGYDTIYAHQD-------KEDDALI 223 (314)
T ss_pred HHHH-HHHhcCCcchHHHHHHHHHHHHHHHHHHhCCCch-HHH--HHHHHHHHHHHHHHHHHHhhh-------HhhHHHc
Confidence 1231 1111121 11333333333222222111 111 112235556665555432222 3468889
Q ss_pred CcccHHHHHHhhh
Q 018156 269 GIITAPILFAMEE 281 (360)
Q Consensus 269 gk~Tlp~l~al~~ 281 (360)
|++|+|+.+-.+.
T Consensus 224 Gi~slpv~~G~~~ 236 (314)
T PRK12878 224 GVKSTARLFGDHT 236 (314)
T ss_pred CCcccchHhchhh
Confidence 9999999986544
No 36
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=62.02 E-value=1.4e+02 Score=28.12 Aligned_cols=136 Identities=17% Similarity=0.032 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhhccCCCCC----CC-CCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---------HHHH
Q 018156 133 EITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---------MECY 198 (360)
Q Consensus 133 ~~vEllH~asLihDDI~D~s~----~R-RG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~---------~~~Y 198 (360)
.+.=++|.+..+..|+.|.+. .| |.+|.+--+-..+.|...|-.++..+.-..... |.... .--|
T Consensus 49 ~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l-~~~~~~l~~~~~~~~~~Y 127 (282)
T PRK12848 49 LGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTL-NTLTIWLSVAALALAWIY 127 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence 344488999999999977443 33 467888778888888888877776665433222 22111 1234
Q ss_pred Hhhhhhhh-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcc
Q 018156 199 MQKTYNKT-------AALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGII 271 (360)
Q Consensus 199 ~~~~~~KT-------a~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~ 271 (360)
- ..++.| |..++.+..+|......+-.. ..+ +---.-..+|+.-|+..-..| ..+|.+.|.+
T Consensus 128 ~-~~Kr~~~~~~~~~g~~~g~~~~~g~~a~~~~~~~-~~~--~l~~~~~~w~~~~~~~~a~~D-------~e~D~~~G~~ 196 (282)
T PRK12848 128 P-FMKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVPL-EAW--LLFLANILWTVAYDTQYAMVD-------RDDDLKIGIK 196 (282)
T ss_pred H-hHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCcH-HHH--HHHHHHHHHHHHHHHHHHhcc-------HhhHHHcCCc
Confidence 1 122222 222344444444333222111 111 111223455666665533332 2468889999
Q ss_pred cHHHHHHhh
Q 018156 272 TAPILFAME 280 (360)
Q Consensus 272 Tlp~l~al~ 280 (360)
|+|+.+-.+
T Consensus 197 tlpv~~G~~ 205 (282)
T PRK12848 197 STAILFGRY 205 (282)
T ss_pred cccHHhccc
Confidence 999998654
No 37
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=56.05 E-value=1.4e+02 Score=28.79 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=29.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 220 LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 220 lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
+.|.+.+....+...-+.+=.|.-|-||+.|= +++|.|++|.-..|
T Consensus 57 ~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRg~pt~~~~~ 102 (319)
T TIGR02748 57 FGDYDLDAIKHVAVALELIHMASLVHDDVIDD------------ADLRRGRPTIKSKW 102 (319)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhccccCC------------CCCCCCCcCHHHHh
Confidence 34444443334455556777888999999773 46677777765554
No 38
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=53.20 E-value=1.9e+02 Score=28.04 Aligned_cols=45 Identities=27% Similarity=0.273 Sum_probs=30.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 221 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 221 ag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
.|.+.+....+...-+.+=.+..|-||+.|= +++|.|++|+-..|
T Consensus 59 ~g~~~~~~~~~A~avEllH~asLiHDDI~D~------------s~~RRG~pt~~~~~ 103 (323)
T PRK10888 59 VGYQGNAHVTIAALIEFIHTATLLHDDVVDE------------SDMRRGKATANAAF 103 (323)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHcccccC------------CcccCCCCCHHHHh
Confidence 3444443334555556777889999999773 56788888876655
No 39
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=52.43 E-value=1.9e+02 Score=26.81 Aligned_cols=41 Identities=32% Similarity=0.271 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHH
Q 018156 226 EVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 278 (360)
Q Consensus 226 ~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~a 278 (360)
+....+...-+-+=.++-|.||+.|= +++|.|++|+-..|.
T Consensus 39 ~~~~~la~aiEllh~asLIhDDI~D~------------s~~RRG~p~~~~~~G 79 (259)
T cd00685 39 EAALRLAAAIELLHTASLVHDDVMDN------------SDLRRGKPTVHKVFG 79 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC------------CcccCCCCcHHHHhC
Confidence 43445556667788899999999762 345677777655553
No 40
>PLN00012 chlorophyll synthetase; Provisional
Probab=50.94 E-value=2.6e+02 Score=27.78 Aligned_cols=43 Identities=9% Similarity=-0.075 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCC---CCCCCcccccchHHHHHH
Q 018156 131 IAEITEMIHVASLIHDDVLDDADTR---RGIGSLSSVMGNKLAILA 173 (360)
Q Consensus 131 lA~~vEllH~asLihDDI~D~s~~R---RG~pt~~~~~G~~~Ail~ 173 (360)
...+.=+++.++-+..|+.|.+.-| +.+|...-....+.++..
T Consensus 128 ~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~ 173 (375)
T PLN00012 128 MLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQ 173 (375)
T ss_pred HHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHH
Confidence 3344667888899999998854323 556666666666776663
No 41
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=49.15 E-value=2.3e+02 Score=26.61 Aligned_cols=48 Identities=17% Similarity=0.071 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCC----C-CCCCCCcccccchHHHHHHHHHH
Q 018156 130 CIAEITEMIHVASLIHDDVLDDAD----T-RRGIGSLSSVMGNKLAILAGDLL 177 (360)
Q Consensus 130 ~lA~~vEllH~asLihDDI~D~s~----~-RRG~pt~~~~~G~~~Ail~Gd~L 177 (360)
-+..+.=+++.+..+..|+.|.+. . .+.+|-...+...+.|...+-.+
T Consensus 40 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~ 92 (282)
T TIGR01475 40 LILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILS 92 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHH
Confidence 344455688999999999977433 2 24567766667777777666544
No 42
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=46.30 E-value=2.3e+02 Score=25.63 Aligned_cols=132 Identities=19% Similarity=0.159 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhccCCCCCCCC--CC---CCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---------HHHHH--
Q 018156 136 EMIHVASLIHDDVLDDADTRR--GI---GSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---------MECYM-- 199 (360)
Q Consensus 136 EllH~asLihDDI~D~s~~RR--G~---pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~---------~~~Y~-- 199 (360)
=++|.+.-+.||+.|-..-|. ++ |-...+...+.+...+-.++..+.-... ..++... .=-|-
T Consensus 33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~-~~~~~~~~~~~~~~~~~~~Ys~~ 111 (257)
T PF01040_consen 33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLAL-LLGPWFLLILLLGFLLGLLYSPP 111 (257)
T ss_pred HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHhhh
Confidence 389999999999988666555 43 3334455555555555555444432221 1122211 11222
Q ss_pred ---hhhhh-hhHHH---HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcc
Q 018156 200 ---QKTYN-KTAAL---VSNSCKAVAYLSGQR-EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGII 271 (360)
Q Consensus 200 ---~~~~~-KTa~L---~~~~~~~ga~lag~~-~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~ 271 (360)
+.... |.-.. +.....+|+...+.+ ....-.+.-+.--++......+|+.|+.+ |.+.|+.
T Consensus 112 ~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-----------D~~~g~~ 180 (257)
T PF01040_consen 112 LRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEG-----------DRKAGRR 180 (257)
T ss_pred hhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHcCCc
Confidence 11111 22111 223333444444433 22222333344577788888889999864 5577889
Q ss_pred cHHHHHHh
Q 018156 272 TAPILFAM 279 (360)
Q Consensus 272 Tlp~l~al 279 (360)
|+|+.+..
T Consensus 181 Tl~v~~G~ 188 (257)
T PF01040_consen 181 TLPVLLGE 188 (257)
T ss_pred chHHHHHH
Confidence 99998843
No 43
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=46.25 E-value=1.7e+02 Score=27.59 Aligned_cols=49 Identities=10% Similarity=-0.127 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCC---CCcccccchHHHHHHHHHHHHHH
Q 018156 133 EITEMIHVASLIHDDVLDDADTRRGI---GSLSSVMGNKLAILAGDLLISRA 181 (360)
Q Consensus 133 ~~vEllH~asLihDDI~D~s~~RRG~---pt~~~~~G~~~Ail~Gd~L~~~a 181 (360)
.+.=++|.++-+..|+.|.+.-|+.+ |........+.+...+-.+...+
T Consensus 45 ~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 45 MAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 35568899999999999987656554 44444445555555554444333
No 44
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=43.29 E-value=2.7e+02 Score=25.74 Aligned_cols=49 Identities=31% Similarity=0.211 Sum_probs=34.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 217 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 217 ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
.+.+.+.+.+....+...-..+=.++-|.||+.|= +++|.|++|.-..|
T Consensus 24 ~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D~------------s~~RRG~pt~~~~~ 72 (260)
T PF00348_consen 24 AAEALGGDPEKAIPLAAAVELIHAASLIHDDIIDN------------SDLRRGKPTVHKKF 72 (260)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc------------cccCCCCccccccc
Confidence 33444455555566667778888899999999773 46778888765555
No 45
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=40.74 E-value=3.2e+02 Score=25.76 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCC----CC-CCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 018156 131 IAEITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLISRALVAL 185 (360)
Q Consensus 131 lA~~vEllH~asLihDDI~D~s~----~R-RG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l 185 (360)
...++=++|.+..+..|+.|.+. .| +.+|-+--+-..+.|...+-.++..+.-.+
T Consensus 50 ~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~ 109 (285)
T PRK12847 50 FIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVIL 109 (285)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 33445689999999999977432 33 467766666677777777766666555443
No 46
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=39.80 E-value=3.3e+02 Score=25.68 Aligned_cols=141 Identities=21% Similarity=0.156 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCC-----CCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH--------
Q 018156 128 QQCIAEITEMIHVASLIHDDVLDDADTRR-----GIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI-------- 194 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI~D~s~~RR-----G~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~-------- 194 (360)
..-+..+.=+.-++..+.+|+.|-+.-|. .+|-..-+-..+.|....-.++..++-....+......
T Consensus 49 ~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l 128 (289)
T COG0382 49 LLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVL 128 (289)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444555677889999999988665554 44545555566666655555554444332222111111
Q ss_pred HHHHHhhhhhh---------hHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccc
Q 018156 195 MECYMQKTYNK---------TAALVSNSCKAVAYLSGQ-REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLT 264 (360)
Q Consensus 195 ~~~Y~~~~~~K---------Ta~L~~~~~~~ga~lag~-~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~ 264 (360)
.--| -+.| -|..+..+.-.|+...+. .....-.+.-+..-..++|.+..|+.|..+|
T Consensus 129 ~~~Y---~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D---------- 195 (289)
T COG0382 129 ALAY---PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGD---------- 195 (289)
T ss_pred HHHH---HHhhcCCchHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccch----------
Confidence 2234 1111 144456666666655553 2233345666677788899999999998654
Q ss_pred hhccCcccHHHHHHhhhC
Q 018156 265 DLRNGIITAPILFAMEEF 282 (360)
Q Consensus 265 Dl~egk~Tlp~l~al~~~ 282 (360)
-+.|..|.|+.+..+..
T Consensus 196 -~~~G~~s~~~~~G~~~a 212 (289)
T COG0382 196 -RKAGLKSLPVLFGIKKA 212 (289)
T ss_pred -HhcCCcchHHHhCchhH
Confidence 46788888888865543
No 47
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=38.75 E-value=3.6e+02 Score=25.88 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhhccCCCCC----CC-CCCCCcccccchHHHHHHHHHHHHHHHHHHH
Q 018156 133 EITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLISRALVALA 186 (360)
Q Consensus 133 ~~vEllH~asLihDDI~D~s~----~R-RG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~ 186 (360)
.++=++|.+..+..|+.|.+. .| |.+|-..-+-..+.|+..|-.+...++..+.
T Consensus 54 lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~ 112 (306)
T PRK13362 54 IGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLA 112 (306)
T ss_pred HHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999977443 33 5788888888889998888877766665443
No 48
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=35.29 E-value=3.4e+02 Score=26.24 Aligned_cols=35 Identities=34% Similarity=0.387 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 231 AFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 231 l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
+...-+.+=.|.-|-||++|- +|+|.|++|+-..|
T Consensus 72 ~A~avEliH~asLiHDDiiD~------------s~~RRG~pt~h~~~ 106 (322)
T TIGR02749 72 LAEITEMIHTASLVHDDVIDE------------SDTRRGIETVHSLF 106 (322)
T ss_pred HHHHHHHHHHHHHHHcccccC------------ccccCCCccHHHHh
Confidence 444556777788999999773 57788888876655
No 49
>PRK13595 ubiA prenyltransferase; Provisional
Probab=35.18 E-value=4.1e+02 Score=25.49 Aligned_cols=59 Identities=12% Similarity=-0.001 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhh
Q 018156 210 VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 281 (360)
Q Consensus 210 ~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~ 281 (360)
+..+...|+...|......- + -...-.+++|.+.-|+.|.. .|-+.|..|.|+.+.-+.
T Consensus 155 ~g~p~~~~~~~~g~~~~~~~-l-~a~~~w~~g~dii~ai~Die-----------gDr~~Gi~Slpv~lG~r~ 213 (292)
T PRK13595 155 YALPLALPALALGAPVPWPP-L-LALMAWSVGKHAFDAAQDIP-----------ADRAAGTRTVATTLGVRG 213 (292)
T ss_pred HHHHHHHHHHHcCCcchHHH-H-HHHHHHHHHHHHHHhccChH-----------hHHHcCCeechHHhCcHh
Confidence 45666677766665432211 1 22345568999999999964 466789999999986543
No 50
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=33.22 E-value=4.3e+02 Score=25.05 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCC----CC-CCCCCcccccchHHHHHHHHHHHH
Q 018156 129 QCIAEITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLIS 179 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D~s~----~R-RG~pt~~~~~G~~~Ail~Gd~L~~ 179 (360)
.-...++=+++++..+..|+.|.+- .| +++|-+--+-..+.|+..+-.++.
T Consensus 42 ~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~~~ 97 (284)
T PRK12888 42 LLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALA 97 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3345566689999999999977442 33 467877777777777766654443
No 51
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=29.16 E-value=1.1e+02 Score=29.19 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhC
Q 018156 238 LGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF 282 (360)
Q Consensus 238 lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~ 282 (360)
...++.+.+|+.|+.+ |-++|+.|+|+.+-.+..
T Consensus 172 ~~~a~~ii~~irDie~-----------Dr~~G~~Tlpv~lG~~~a 205 (282)
T PRK13105 172 WGMASHAFGAVQDVVA-----------DREAGIASIATVLGARRT 205 (282)
T ss_pred HHHHHHHHHhCcchHh-----------HHHcCCccchHHhcHHHH
Confidence 4678999999999864 557899999999976653
No 52
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=28.82 E-value=1.2e+02 Score=30.18 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhhhhhhhcccCCc
Q 018156 203 YNKTAALVSNSCKAVAYLSGQRE-EVATLAFEYGKNLGLAYQLIDDILDFTGTS 255 (360)
Q Consensus 203 ~~KTa~L~~~~~~~ga~lag~~~-~~~~~l~~~G~~lG~afQI~DDilD~~~~~ 255 (360)
.--||..++++|.....+.|.+- +-.-. --+|..||+. .||+-|+.+..
T Consensus 368 AAVtGv~IAaa~m~lss~tgnPIyD~~GS-ivvGaLLGmV---e~diyDvK~~d 417 (503)
T KOG2802|consen 368 AAVTGVIIAAACMGLSSITGNPIYDSLGS-IVVGALLGMV---ENDIYDVKATD 417 (503)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccch-HHHHHHHHHH---HHhhhhcccee
Confidence 34466677776665555555432 21111 2468889987 89999986543
No 53
>PRK10581 geranyltranstransferase; Provisional
Probab=27.22 E-value=1.4e+02 Score=28.53 Aligned_cols=60 Identities=27% Similarity=0.328 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCC--C----------CCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcC
Q 018156 129 QCIAEITEMIHVASLIHDDVLDD--A----------DTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL 188 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D~--s----------~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~ 188 (360)
..+...-+.+=.|+=|.|||.|- + +.+.|++|+=..+|...|-...+-+...|...|..+
T Consensus 206 ~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l 277 (299)
T PRK10581 206 PVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQL 277 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555567788899999999982 2 345555555444554444444444444444444444
No 54
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=26.72 E-value=1.1e+02 Score=29.43 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCC-CCCCCCCCCCcccccchHHHHHHHHHHHHHHH
Q 018156 129 QCIAEITEMIHVASLIHDDVLD-DADTRRGIGSLSSVMGNKLAILAGDLLISRAL 182 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D-~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~ 182 (360)
.-++...-+...+.++.+|+.| +.+.|.|++|.=..+|.+.+....-+++..++
T Consensus 192 ~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~ 246 (314)
T PRK07566 192 VILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQ 246 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHH
Confidence 3344444555666688888888 44578899999999999988776665555554
No 55
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=26.69 E-value=1.3e+02 Score=28.58 Aligned_cols=58 Identities=24% Similarity=0.229 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCC-CCCCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 018156 128 QQCIAEITEMIHVASLIHDDVLDD-ADTRRGIGSLSSVMGNKLAILAGDLLISRALVAL 185 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI~D~-s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l 185 (360)
...++.++=++-.+.++..++.|- .+.+.|+.|+=.++|.+.|....-.++..++-.+
T Consensus 162 ~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~ 220 (282)
T PRK13105 162 LWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLM 220 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence 445566676778889999999994 4567899999999999999988887777666444
No 56
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=25.54 E-value=1.7e+02 Score=27.45 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhhccCC-CCCCCCCCCCcccccchHHHHHHHHHHHH
Q 018156 130 CIAEITEMIHVASLIHDDVLD-DADTRRGIGSLSSVMGNKLAILAGDLLIS 179 (360)
Q Consensus 130 ~lA~~vEllH~asLihDDI~D-~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~ 179 (360)
-++..+-+.-.+.+..+|+.| +.|.+.|++|.=..+|.+.+...--.++.
T Consensus 165 ~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~ 215 (283)
T TIGR01476 165 VVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTIN 215 (283)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHH
Confidence 345555566667789999999 66678899999999999988765544443
No 57
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=25.26 E-value=6e+02 Score=24.17 Aligned_cols=59 Identities=14% Similarity=-0.050 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCC----CC-CCCCCcccccchHHHHHHHHHHHHHHHHHHHc
Q 018156 129 QCIAEITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLISRALVALAS 187 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D~s~----~R-RG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~ 187 (360)
.-...++=+++++..+..|+.|.+. .| |.+|-+--+...+.|+..+-.+...++-.+..
T Consensus 48 ~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~ 111 (289)
T PLN02809 48 ALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQ 111 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566789999999999977542 45 68888877778888887777666655544443
No 58
>PRK13591 ubiA prenyltransferase; Provisional
Probab=23.79 E-value=6.7e+02 Score=24.26 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=23.3
Q ss_pred HHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhh
Q 018156 240 LAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 281 (360)
Q Consensus 240 ~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~ 281 (360)
.+..+.+|+.|..+ |.++|+.|+|+.+-.+.
T Consensus 193 ~~~~iindirDiEG-----------Dr~~G~kTLPV~lG~~~ 223 (307)
T PRK13591 193 FINSCVYDFKDVKG-----------DTLAGIKTLPVSLGEQK 223 (307)
T ss_pred HHHHHHHHhhhhHh-----------HHHcCCeeEEEEECHHH
Confidence 34457899999854 56789999999886554
No 59
>CHL00151 preA prenyl transferase; Reviewed
Probab=23.66 E-value=5.4e+02 Score=24.80 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 231 AFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 231 l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
+...-+.+=.+.-|-||+.| .+|+|.|++|+-..|
T Consensus 73 ~A~aiEllH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 107 (323)
T CHL00151 73 LAEITEIIHTASLVHDDVID------------ECSIRRGIPTVHKIF 107 (323)
T ss_pred HHHHHHHHHHHHHHHccccc------------CccccCCCccHHHHh
Confidence 34445566678889999976 256788888876655
No 60
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=22.27 E-value=3.7e+02 Score=25.33 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC-CCCCCCCCCCcccccchHHHHHHHHHHHHHHH
Q 018156 127 RQQCIAEITEMIHVASLIHDDVLD-DADTRRGIGSLSSVMGNKLAILAGDLLISRAL 182 (360)
Q Consensus 127 ~~~~lA~~vEllH~asLihDDI~D-~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~ 182 (360)
...-++...-++-.+.++..|+.| +.+.+.|+.|.=.++|.+.+...--.++..++
T Consensus 169 ~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 169 AVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAY 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHH
Confidence 345566667777788888899999 44577899999999999987665555555454
No 61
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=21.53 E-value=1.7e+02 Score=28.63 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=34.2
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccc
Q 018156 197 CYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 257 (360)
Q Consensus 197 ~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~ 257 (360)
+-+..+..|+ .-|+.|++++-.+.+..+.+ ..+=+|||-+.|+||=..|...
T Consensus 25 qAl~Si~~K~-----FHceGgsi~al~~~~~~~~~----i~fIVAyQTIsDYLDNLcDrs~ 76 (330)
T PF10776_consen 25 QALASIRSKK-----FHCEGGSIYALLPGENRDEL----IRFIVAYQTISDYLDNLCDRST 76 (330)
T ss_pred HHHHHHhhCc-----cCCcchhhhhhcCCccHhhH----HHHHHHHHHHHHHHHhhhhccC
Confidence 3344455555 46888888775444333333 3566899999999998877543
No 62
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=21.04 E-value=3.1e+02 Score=26.41 Aligned_cols=75 Identities=16% Similarity=0.059 Sum_probs=47.7
Q ss_pred HHHHHhhh---hhhhHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHH-----hhhhhhhcccCCccccCC
Q 018156 195 MECYMQKT---YNKTAALVSNSCKAVAYLSGQR------EEVATLAFEYGKNLGLAY-----QLIDDILDFTGTSASLGK 260 (360)
Q Consensus 195 ~~~Y~~~~---~~KTa~L~~~~~~~ga~lag~~------~~~~~~l~~~G~~lG~af-----QI~DDilD~~~~~~~~GK 260 (360)
+..|++.+ +-+|-.+.-.++..|..++... .... .-+---+|..+ .+.||+.|.--|.. ..+
T Consensus 30 ~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~-~~R 105 (314)
T PRK12878 30 LRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDAK-VAR 105 (314)
T ss_pred HHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCC
Confidence 56799888 7788888889999999987542 1111 11122233333 88999999655542 222
Q ss_pred CccchhccCcccH
Q 018156 261 ASLTDLRNGIITA 273 (360)
Q Consensus 261 ~~g~Dl~egk~Tl 273 (360)
+...=+..|+.|.
T Consensus 106 t~~RPl~sG~is~ 118 (314)
T PRK12878 106 TRSRPLPSGQVSR 118 (314)
T ss_pred CCCCCCCCCCcCH
Confidence 3345577788773
No 63
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=20.82 E-value=2.2e+02 Score=27.31 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhhccCC-CCCCCCCCCCcccccchHHHHHHHHHHHHHHH
Q 018156 130 CIAEITEMIHVASLIHDDVLD-DADTRRGIGSLSSVMGNKLAILAGDLLISRAL 182 (360)
Q Consensus 130 ~lA~~vEllH~asLihDDI~D-~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~ 182 (360)
-++..+=++-.+.++.+|+.| +.+.|-|++|.=..+|.+.+...-..++..++
T Consensus 187 l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~ 240 (306)
T TIGR02056 187 VLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQ 240 (306)
T ss_pred HHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHH
Confidence 344444456667788899999 55578899999999999988877765554433
Done!