Query 018156
Match_columns 360
No_of_seqs 278 out of 1655
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 1.7E-68 6E-73 517.3 29.5 291 44-359 22-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 4.9E-68 1.7E-72 514.0 30.2 292 44-360 9-333 (341)
3 3pko_A Geranylgeranyl pyrophos 100.0 1.4E-67 4.8E-72 509.7 27.2 293 44-360 12-334 (334)
4 3apz_A Geranyl diphosphate syn 100.0 1.5E-67 5.1E-72 513.2 27.2 316 45-360 6-348 (348)
5 3rmg_A Octaprenyl-diphosphate 100.0 2.6E-67 9E-72 507.8 26.9 289 46-360 6-326 (334)
6 3lmd_A Geranylgeranyl pyrophos 100.0 2.1E-66 7.1E-71 504.6 27.8 288 48-360 35-352 (360)
7 1wy0_A Geranylgeranyl pyrophos 100.0 3E-66 1E-70 503.0 23.6 289 47-360 5-342 (342)
8 3nf2_A Putative polyprenyl syn 100.0 1.4E-65 4.9E-70 498.4 26.1 285 51-360 7-344 (352)
9 3aqb_B Component B of hexapren 100.0 2.8E-65 9.6E-70 492.8 26.1 285 49-360 6-325 (325)
10 4dhd_A Polyprenyl synthetase; 100.0 1.3E-63 4.4E-68 486.0 26.0 283 50-360 7-336 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 3.9E-63 1.3E-67 478.8 25.4 280 53-360 5-330 (330)
12 3lk5_A Geranylgeranyl pyrophos 100.0 9.9E-62 3.4E-66 475.5 29.2 296 46-359 18-372 (380)
13 1v4e_A Octoprenyl-diphosphate 100.0 1.8E-62 6.2E-67 467.3 23.2 255 53-337 9-289 (299)
14 3tc1_A Octaprenyl pyrophosphat 100.0 2.1E-61 7E-66 462.7 25.4 271 57-356 6-307 (315)
15 2q80_A Geranylgeranyl pyrophos 100.0 7.2E-62 2.5E-66 463.8 21.3 265 64-360 2-297 (301)
16 2e8v_A Geranylgeranyl pyrophos 100.0 9.8E-62 3.3E-66 470.4 21.2 277 60-357 10-339 (340)
17 3uca_A Geranyltranstransferase 100.0 1.3E-60 4.3E-65 457.6 24.9 257 44-360 28-324 (324)
18 4f62_A Geranyltranstransferase 100.0 1.2E-59 4E-64 449.7 27.2 251 50-360 6-295 (317)
19 3ts7_A Geranyltranstransferase 100.0 9.5E-60 3.3E-64 451.6 24.6 251 50-360 10-302 (324)
20 2qis_A Farnesyl pyrophosphate 100.0 2.7E-59 9.1E-64 458.3 26.9 268 73-360 64-374 (374)
21 3p8r_A Geranyltranstransferase 100.0 1.4E-59 4.9E-64 447.5 24.0 250 51-360 11-302 (302)
22 3lsn_A Geranyltranstransferase 100.0 1.8E-59 6.2E-64 446.9 24.7 250 51-360 5-296 (304)
23 3p8l_A Geranyltranstransferase 100.0 1.9E-59 6.6E-64 446.0 23.0 250 52-358 13-302 (302)
24 1rqj_A Geranyltranstransferase 100.0 1.6E-59 5.4E-64 447.4 22.2 253 51-360 5-299 (299)
25 2h8o_A Geranyltranstransferase 100.0 5.3E-59 1.8E-63 448.9 25.9 251 50-360 40-335 (335)
26 1rtr_A Geranyltranstransferase 100.0 1.5E-59 5.2E-64 447.6 21.5 247 56-360 9-293 (301)
27 3dyh_A Farnesyl pyrophosphate 100.0 1.5E-59 5.1E-64 461.9 22.1 302 48-360 24-390 (390)
28 1yhl_A Farnesyl pyrophosphate 100.0 6.2E-59 2.1E-63 454.8 25.5 272 73-360 34-362 (362)
29 1uby_A FPS, farnesyl diphospha 100.0 9.3E-59 3.2E-63 453.4 25.8 268 73-360 57-367 (367)
30 2ihi_A Pyrophosphate synthase; 100.0 7.8E-59 2.7E-63 456.8 23.0 292 44-359 34-395 (395)
31 3mav_A Farnesyl pyrophosphate 100.0 2.6E-58 8.9E-63 454.9 25.9 264 74-358 67-394 (395)
32 3pde_A Farnesyl-diphosphate sy 100.0 1.3E-58 4.6E-63 440.9 21.3 252 51-360 10-300 (309)
33 2her_A Fragment, farnesyl pyro 100.0 1.2E-59 4E-64 457.7 14.1 257 73-358 58-354 (368)
34 3lom_A Geranyltranstransferase 100.0 3.2E-58 1.1E-62 439.7 23.6 249 51-360 11-303 (313)
35 3m0g_A Farnesyl diphosphate sy 100.0 2.3E-58 7.9E-63 438.0 22.4 246 51-360 5-289 (297)
36 3ipi_A Geranyltranstransferase 100.0 1.6E-57 5.4E-62 431.9 22.7 246 57-359 11-283 (295)
37 2ftz_A Geranyltranstransferase 100.0 6.1E-57 2.1E-61 425.7 24.6 238 57-358 15-284 (284)
38 3llw_A Geranyltranstransferase 100.0 1.8E-55 6.1E-60 420.4 25.3 247 60-359 18-304 (311)
39 2q58_A Fragment, farnesyl pyro 100.0 5.3E-56 1.8E-60 434.3 17.4 257 74-359 59-359 (368)
40 3npk_A Geranyltranstransferase 100.0 1.9E-54 6.6E-59 409.6 22.9 240 58-357 7-284 (291)
41 2azj_A Geranylgeranyl pyrophos 100.0 1.9E-54 6.3E-59 409.9 20.7 243 52-359 14-280 (289)
42 2j1p_A Geranylgeranyl pyrophos 100.0 2.6E-53 9E-58 403.3 26.8 241 47-360 11-293 (293)
43 4fp4_A Polyprenyl synthetase; 100.0 2.4E-50 8.1E-55 379.2 14.7 207 44-269 1-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 1.2E-44 4E-49 340.5 23.8 173 57-248 9-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 6.8E-44 2.3E-48 335.3 22.2 172 58-249 15-223 (273)
46 4hd1_A Squalene synthase HPNC; 93.9 1.5 5.2E-05 40.5 15.0 92 219-336 146-237 (294)
47 3vj8_A Squalene synthase; farn 88.3 1.5 5.2E-05 41.6 8.5 119 195-336 138-256 (343)
48 3acx_A Dehydrosqualene synthas 86.9 7.8 0.00027 35.6 12.4 85 231-337 159-243 (293)
49 3rmg_A Octaprenyl-diphosphate 57.2 68 0.0023 29.9 10.4 45 222-278 63-107 (334)
50 2q80_A Geranylgeranyl pyrophos 56.7 1.2E+02 0.004 27.7 12.0 45 222-278 41-85 (301)
51 3nf2_A Putative polyprenyl syn 53.8 57 0.0019 30.7 9.2 49 217-277 65-113 (352)
52 4fp4_A Polyprenyl synthetase; 53.0 87 0.003 28.6 10.1 38 228-277 70-107 (285)
53 3mzv_A Decaprenyl diphosphate 52.6 72 0.0025 29.8 9.7 44 222-277 69-112 (341)
54 4f62_A Geranyltranstransferase 47.0 40 0.0014 31.4 6.9 62 129-190 205-278 (317)
55 2ftz_A Geranyltranstransferase 44.4 1.7E+02 0.0058 26.5 10.7 44 222-277 62-107 (284)
56 3uca_A Geranyltranstransferase 43.5 43 0.0015 31.2 6.5 62 129-190 234-307 (324)
57 3pko_A Geranylgeranyl pyrophos 43.0 1.2E+02 0.0041 28.2 9.6 47 220-278 69-116 (334)
58 3lsn_A Geranyltranstransferase 42.3 36 0.0012 31.5 5.7 62 129-190 206-279 (304)
59 1rtr_A Geranyltranstransferase 41.7 44 0.0015 30.7 6.3 61 129-189 201-273 (301)
60 3aqb_B Component B of hexapren 38.9 1.5E+02 0.0052 27.3 9.6 46 220-277 58-103 (325)
61 1v4e_A Octoprenyl-diphosphate 38.4 1.3E+02 0.0045 27.4 9.0 37 230-278 65-101 (299)
62 4dhd_A Polyprenyl synthetase; 36.6 1.3E+02 0.0045 28.2 8.8 36 230-277 69-104 (358)
63 2e8v_A Geranylgeranyl pyrophos 36.0 2.4E+02 0.0083 26.1 10.5 44 222-277 56-99 (340)
64 2h8o_A Geranyltranstransferase 35.8 51 0.0017 30.9 5.7 61 128-188 244-316 (335)
65 3p8l_A Geranyltranstransferase 35.5 53 0.0018 30.2 5.7 60 129-188 209-280 (302)
66 1wmw_A Geranylgeranyl diphosph 33.2 2.1E+02 0.0073 26.3 9.6 46 220-277 53-98 (330)
67 1di1_A Aristolochene synthase; 32.1 2.6E+02 0.0091 24.6 11.1 60 195-254 154-213 (300)
68 3ts7_A Geranyltranstransferase 32.0 42 0.0014 31.3 4.4 62 129-190 212-285 (324)
69 3aqb_A Component A of hexapren 31.6 71 0.0024 26.0 5.0 39 170-208 72-113 (147)
70 3lmd_A Geranylgeranyl pyrophos 31.5 1.3E+02 0.0046 28.2 7.9 48 218-277 86-134 (360)
71 2azj_A Geranylgeranyl pyrophos 31.1 2.1E+02 0.0071 25.9 9.0 37 230-278 73-109 (289)
72 3pde_A Farnesyl-diphosphate sy 30.9 2.9E+02 0.01 25.2 10.0 38 229-278 73-112 (309)
73 1wy0_A Geranylgeranyl pyrophos 30.6 1.7E+02 0.0058 27.1 8.5 45 222-278 62-106 (342)
74 3bny_A Aristolochene synthase; 29.8 3E+02 0.01 24.5 10.4 60 195-254 168-227 (320)
75 3lom_A Geranyltranstransferase 28.7 1E+02 0.0036 28.4 6.5 61 129-189 213-285 (313)
76 3p8r_A Geranyltranstransferase 28.0 40 0.0014 31.1 3.5 61 130-190 213-285 (302)
77 3oyr_A Trans-isoprenyl diphosp 25.9 85 0.0029 29.4 5.4 52 197-250 58-109 (345)
78 3llw_A Geranyltranstransferase 25.2 2.3E+02 0.0077 26.0 8.1 37 229-277 77-115 (311)
79 1rqj_A Geranyltranstransferase 25.1 3.7E+02 0.013 24.3 9.6 46 220-277 58-105 (299)
80 3m0g_A Farnesyl diphosphate sy 24.7 3.9E+02 0.013 24.2 10.1 66 197-277 35-102 (297)
81 3n0f_A Isoprene synthase; terp 20.8 6.3E+02 0.022 25.1 11.5 57 195-253 395-456 (555)
82 3ipi_A Geranyltranstransferase 20.8 1.9E+02 0.0064 26.4 6.5 38 129-166 190-233 (295)
83 3kb9_A EPI-isozizaene synthase 20.3 5.2E+02 0.018 24.0 10.8 59 195-254 208-269 (382)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=1.7e-68 Score=517.25 Aligned_cols=291 Identities=27% Similarity=0.390 Sum_probs=238.9
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhh
Q 018156 44 KKHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILD 123 (360)
Q Consensus 44 ~~~~~~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~ 123 (360)
+.+.+++..+.+|++.|++.|++.+.+.+|.+.+++.|++..| |||+||+|++++++++|++.
T Consensus 22 ~~~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~--------------- 84 (345)
T 3oyr_A 22 GSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADN--------------- 84 (345)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCS---------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH---------------
Confidence 4466778889999999999999999999999999999999988 99999999999999998752
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---------
Q 018156 124 LRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI--------- 194 (360)
Q Consensus 124 ~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~--------- 194 (360)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||+.+++..+.+++
T Consensus 85 --~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~ 162 (345)
T 3oyr_A 85 --DHFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRV 162 (345)
T ss_dssp --STHHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 257789999999999999999999999999999999999999999999999999999999988775543
Q ss_pred ------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcc
Q 018156 195 ------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSA 256 (360)
Q Consensus 195 ------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~ 256 (360)
+++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 163 ~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~ 242 (345)
T 3oyr_A 163 IAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATE 242 (345)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Confidence 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchhccCcccHHHHHHhhhC-hHHH----HHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 018156 257 SLGKASLTDLRNGIITAPILFAMEEF-PQLR----AFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAID 331 (360)
Q Consensus 257 ~~GK~~g~Dl~egk~Tlp~l~al~~~-~~~~----~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 331 (360)
.+|||.|+||++||+|||++++++.. ++.+ +.+.+...++++++++++++.++|++++++..+++|.++|++.|+
T Consensus 243 ~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~ 322 (345)
T 3oyr_A 243 TLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALA 322 (345)
T ss_dssp --------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999874 3433 444444456788999999999999999999999999999999999
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHHhcc
Q 018156 332 SLPETHDVDATNARTALVHITQKIITRN 359 (360)
Q Consensus 332 ~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 359 (360)
.||+++ +|+.|..|++++++|+
T Consensus 323 ~lp~~~------~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 323 MFPAND------WREALEELADFAVSRR 344 (345)
T ss_dssp TSCSSH------HHHHHHHHHHHHHHC-
T ss_pred hCCCcH------HHHHHHHHHHHHHhcc
Confidence 999988 9999999999999996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=4.9e-68 Score=514.00 Aligned_cols=292 Identities=26% Similarity=0.448 Sum_probs=254.4
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhh
Q 018156 44 KKHLDPFSLVGDELSLISMRLRSMVVAE-VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLIL 122 (360)
Q Consensus 44 ~~~~~~~~~~~~dl~~v~~~l~~~~~~~-~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~ 122 (360)
+.+.+.+..+.++++.|++.|++.+.+. +|.+.+++.|++..| |||+||.|++++++++|++.
T Consensus 9 ~~~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-------------- 72 (341)
T 3mzv_A 9 KPHDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGG-------------- 72 (341)
T ss_dssp CHHHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSC--CCCHHHHHHHHHHHHTTCCC--------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH--------------
Confidence 4566677889999999999999999988 899999999999988 99999999999999998751
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH--------
Q 018156 123 DLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI-------- 194 (360)
Q Consensus 123 ~~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~-------- 194 (360)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.+++..+.+++
T Consensus 73 ---~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~ 149 (341)
T 3mzv_A 73 ---PFHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASA 149 (341)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 267889999999999999999999999999999999999999999999999999999999987765433
Q ss_pred -------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCc
Q 018156 195 -------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 255 (360)
Q Consensus 195 -------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~ 255 (360)
+++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++++
T Consensus 150 ~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~ 229 (341)
T 3mzv_A 150 VIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKS 229 (341)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccchhccCcccHHHHHHhhhCh-H----HHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 018156 256 ASLGKASLTDLRNGIITAPILFAMEEFP-Q----LRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAI 330 (360)
Q Consensus 256 ~~~GK~~g~Dl~egk~Tlp~l~al~~~~-~----~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L 330 (360)
+.+||+.|+||++||+|||+++|++..+ . +++++.+...+++++++++++++++|++++++.++++|.++|++.|
T Consensus 230 ~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L 309 (341)
T 3mzv_A 230 AEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKAL 309 (341)
T ss_dssp ------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999854 2 4455555545678899999999999999999999999999999999
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 331 DSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 331 ~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+.||+++ +|+.|..|++++++|++
T Consensus 310 ~~lp~~~------~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 310 AKLPDHP------LRQMLDDLADYVVERVR 333 (341)
T ss_dssp TTSCCCH------HHHHHHHHHHHHTGGGC
T ss_pred HhCCCCH------HHHHHHHHHHHHHhccc
Confidence 9999988 99999999999999974
No 3
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1.4e-67 Score=509.74 Aligned_cols=293 Identities=27% Similarity=0.451 Sum_probs=270.1
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhh
Q 018156 44 KKHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILD 123 (360)
Q Consensus 44 ~~~~~~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~ 123 (360)
-.++++|+.+.+|++.|++.|++.+.+.+|.+.+++.|++..| |||+||.|++++++ +|+..+
T Consensus 12 ~~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~-~g~~~~-------------- 74 (334)
T 3pko_A 12 RQLWRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSG--GKLLRPGYFYLFST-FGNAAT-------------- 74 (334)
T ss_dssp CGGGGGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHT-TCSCCC--------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHH-HcCCCC--------------
Confidence 3477889999999999999999999999999999999999989 99999999999999 664111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC-hHHH--------
Q 018156 124 LRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH-TEVI-------- 194 (360)
Q Consensus 124 ~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~-~~~~-------- 194 (360)
.+.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||+.+++..+ ++++
T Consensus 75 -~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~ 153 (334)
T 3pko_A 75 -PAQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMH 153 (334)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999999999999999999999999999988655 4322
Q ss_pred -------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCc
Q 018156 195 -------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 255 (360)
Q Consensus 195 -------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~ 255 (360)
+++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++++
T Consensus 154 ~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~ 233 (334)
T 3pko_A 154 RILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDP 233 (334)
T ss_dssp HHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCT
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccchhccCcccHHHHHHhhhCh-HHHHHHh-cCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 018156 256 ASLGKASLTDLRNGIITAPILFAMEEFP-QLRAFIN-SSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSL 333 (360)
Q Consensus 256 ~~~GK~~g~Dl~egk~Tlp~l~al~~~~-~~~~~l~-~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~l 333 (360)
+.+|||.|+||++||+|||++++++..+ ++++++. ....+++++++++++++++|++++++.++++|.++|++.|+.|
T Consensus 234 ~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~l 313 (334)
T 3pko_A 234 KRTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQL 313 (334)
T ss_dssp TSCCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhcCCCCCCccccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999866 6777774 3345778899999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 334 PETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 334 p~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
|.++ +++.|..|++++++|++
T Consensus 314 p~~~------~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 314 PVGS------AQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp CSSH------HHHHHHHHHHHHTTCC-
T ss_pred CCcH------HHHHHHHHHHHHHhccC
Confidence 9988 99999999999999975
No 4
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=1.5e-67 Score=513.23 Aligned_cols=316 Identities=68% Similarity=1.004 Sum_probs=247.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhh
Q 018156 45 KHLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDL 124 (360)
Q Consensus 45 ~~~~~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (360)
...+++..+.+|++.|++.|++.+.+.+|.+.+++.|++..|.+|||+||.|++++++++|++.+.+...+..+....++
T Consensus 6 ~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (348)
T 3apz_A 6 EELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSEL 85 (348)
T ss_dssp --CCTTTTTHHHHHHHHHGGGGCCCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccch
Confidence 34557788999999999999999999999999999999985455999999999999999986421110000000011233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH----------
Q 018156 125 RRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---------- 194 (360)
Q Consensus 125 ~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~---------- 194 (360)
.+.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|++.+++..+.+++
T Consensus 86 ~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 165 (348)
T 3apz_A 86 RVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHL 165 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999887765443
Q ss_pred -----------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccc
Q 018156 195 -----------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 257 (360)
Q Consensus 195 -----------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~ 257 (360)
+++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.
T Consensus 166 ~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~ 245 (348)
T 3apz_A 166 VTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSAS 245 (348)
T ss_dssp HHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhh
Confidence 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 258 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 258 ~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
+|||.|+||++||+|||+++|++..+++++++.+.+.++++++++++++.++|++++++.++++|.++|++.|+.||.++
T Consensus 246 ~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~ 325 (348)
T 3apz_A 246 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETD 325 (348)
T ss_dssp TTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred cCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999988899999888888889999999999999999999999999999999999999875
Q ss_pred CccchHHHHHHHHHHHHHHhccC
Q 018156 338 DVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 338 ~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
......+++.|..|++++++|++
T Consensus 326 ~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 326 NEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccHHHHHHHHHHHHHHHhCcC
Confidence 11111268999999999999985
No 5
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.6e-67 Score=507.81 Aligned_cols=289 Identities=27% Similarity=0.380 Sum_probs=245.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhH
Q 018156 46 HLDPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLR 125 (360)
Q Consensus 46 ~~~~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (360)
+.+.++.+.+|++.|+..|++.+.+.+|.+.+++.|++..| |||+||.|++++++++|++ .
T Consensus 6 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~-----------------~ 66 (334)
T 3rmg_A 6 ISLIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAV-----------------T 66 (334)
T ss_dssp HHHHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCC-----------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------h
Confidence 34567889999999999999999999999999999999888 9999999999999999864 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH-----------
Q 018156 126 RRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI----------- 194 (360)
Q Consensus 126 ~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~----------- 194 (360)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|++.++...+.+++
T Consensus 67 ~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 146 (334)
T 3rmg_A 67 PATLHAAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLA 146 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999887665443
Q ss_pred ----------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcccc
Q 018156 195 ----------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASL 258 (360)
Q Consensus 195 ----------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~ 258 (360)
+++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++ +++.+
T Consensus 147 ~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~ 225 (334)
T 3rmg_A 147 EGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKI 225 (334)
T ss_dssp HHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC---
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-Chhhc
Confidence 6889999999999999999999999999999999999999999999999999999999 58899
Q ss_pred CCCccchhccCcccHHHHHHhhhC-h----HHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 018156 259 GKASLTDLRNGIITAPILFAMEEF-P----QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSL 333 (360)
Q Consensus 259 GK~~g~Dl~egk~Tlp~l~al~~~-~----~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~l 333 (360)
|||.|+||++||+|||+++|++.. + .+.+++.+...+++++++++++++++|++++++.++++|.++|++.|+.|
T Consensus 226 GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~l 305 (334)
T 3rmg_A 226 GKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAAL 305 (334)
T ss_dssp ---CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999874 2 46667777667888999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 334 PETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 334 p~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
|+++ +|+.|..|++++++|.+
T Consensus 306 p~~~------~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 306 PDSN------ICLALRTYLDYVVAREK 326 (334)
T ss_dssp CCCH------HHHHHHHHHHHHHHCC-
T ss_pred CCcH------HHHHHHHHHHHHHhccc
Confidence 9888 99999999999999974
No 6
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.1e-66 Score=504.65 Aligned_cols=288 Identities=27% Similarity=0.421 Sum_probs=246.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHH
Q 018156 48 DPFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRR 127 (360)
Q Consensus 48 ~~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
+.+..+.++++.|++.|++.+.+.+|.+.+++.|++..| |||+||+|++++++++|... .+.
T Consensus 35 ~~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~ll~~~~~~~~~----------------~~~ 96 (360)
T 3lmd_A 35 ELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPL----------------SEN 96 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCC--SCCHHHHHHHHHHTTSSSTT----------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHhCCCC----------------hHH
Confidence 345788999999999999999999999999999999988 99999999999999887221 246
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH-------------
Q 018156 128 QQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI------------- 194 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~------------- 194 (360)
+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.++++++ +++
T Consensus 97 ~~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~~~~~~~~~~~G 175 (360)
T 3lmd_A 97 VIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGT-DTVAHFAETFGELVTG 175 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999987643 322
Q ss_pred -------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCC
Q 018156 195 -------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKA 261 (360)
Q Consensus 195 -------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~ 261 (360)
+++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+
T Consensus 176 Q~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~ 255 (360)
T 3lmd_A 176 QMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKT 255 (360)
T ss_dssp HHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhccCcccHHHHHHhhhC----hHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 262 SLTDLRNGIITAPILFAMEEF----PQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 262 ~g~Dl~egk~Tlp~l~al~~~----~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
.|+||++||+|||+++|++.. +++++++.+...+++++++++++++++|++++++.++++|.++|++.|+.||+++
T Consensus 256 ~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~ 335 (360)
T 3lmd_A 256 PGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDST 335 (360)
T ss_dssp CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSH
T ss_pred chhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999874 2466777766667889999999999999999999999999999999999999988
Q ss_pred CccchHHHHHHHHHHHHHHhccC
Q 018156 338 DVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 338 ~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+++.|..|++++++|+.
T Consensus 336 ------~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 336 ------VKEALRNLATFTVKRVG 352 (360)
T ss_dssp ------HHHHHHHHHHHHHHTTS
T ss_pred ------HHHHHHHHHHHHHHhcc
Confidence 99999999999999974
No 7
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=3e-66 Score=502.98 Aligned_cols=289 Identities=29% Similarity=0.398 Sum_probs=262.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhH
Q 018156 47 LDPFSLVGDELSLISMRLRSMVVAE-VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLR 125 (360)
Q Consensus 47 ~~~~~~~~~dl~~v~~~l~~~~~~~-~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (360)
.+.+..+.++++.|++.|++.+.+. +|.+.+++.|++..| |||+||.|++++++++|++ .
T Consensus 5 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~-----------------~ 65 (342)
T 1wy0_A 5 EELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGD-----------------P 65 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGT--CCCHHHHHHHHHTTTTTSC-----------------G
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCC-----------------H
Confidence 3456778899999999999999887 889999999999988 9999999999999999764 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCC-----ChHHH------
Q 018156 126 RRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK-----HTEVI------ 194 (360)
Q Consensus 126 ~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~-----~~~~~------ 194 (360)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||+.+++.. +.+++
T Consensus 66 ~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 145 (342)
T 1wy0_A 66 LRAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKA 145 (342)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHH
Confidence 2467899999999999999999999999999999999999999999999999999999999862 22222
Q ss_pred ---------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccC
Q 018156 195 ---------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTG 253 (360)
Q Consensus 195 ---------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~ 253 (360)
+++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++
T Consensus 146 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 146 SNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 68899999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccchhccCcccHHHHHHhhhC-hHHHHHHhcCCCC---------------chhHHHHHHHHHhcchHHHHHH
Q 018156 254 TSASLGKASLTDLRNGIITAPILFAMEEF-PQLRAFINSSSDN---------------PANVDVILEYLGKSHGIQRTTE 317 (360)
Q Consensus 254 ~~~~~GK~~g~Dl~egk~Tlp~l~al~~~-~~~~~~l~~~~~~---------------~~~~~~i~~li~~~g~i~~a~~ 317 (360)
+++.+|||.|+||++||+|||++++++.. ++.++.+.+.+.. +++++++++++.++|++++++.
T Consensus 226 d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~ 305 (342)
T 1wy0_A 226 DEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAE 305 (342)
T ss_dssp CHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHH
Confidence 99999999999999999999999999875 3555556554432 5678999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 318 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 318 ~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
.+++|.++|++.|+.+|+++ .++.|..|++++++|++
T Consensus 306 ~~~~~~~~A~~~L~~l~~~~------~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 306 IAKDMIKKANEALRILPKSK------ARMDLELLAKFIVEREY 342 (342)
T ss_dssp HHHHHHHHHHTTGGGSCCCH------HHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhccC
Confidence 99999999999999999887 89999999999999974
No 8
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=1.4e-65 Score=498.42 Aligned_cols=285 Identities=26% Similarity=0.378 Sum_probs=257.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHh-----------hCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccch
Q 018156 51 SLVGDELSLISMRLRSMVVAEVPELASAAGYFF-----------KEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNT 119 (360)
Q Consensus 51 ~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~-----------~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~ 119 (360)
..+..-.+.|+..|++.+.+.+|.+.+++.|.+ ..| |||+||+|++++++++|++
T Consensus 7 ~~l~~~~~~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~g--GKrlRp~l~ll~~~~~g~~------------ 72 (352)
T 3nf2_A 7 ALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSAEVTGAA------------ 72 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCC--CCCHHHHHHHHHHHTTTCC------------
T ss_pred HHHHHHHHHHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCC--cccHHHHHHHHHHHHcCCC------------
Confidence 456667778999999999999999999999998 456 9999999999999999874
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCCh---HHH--
Q 018156 120 LILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT---EVI-- 194 (360)
Q Consensus 120 ~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~---~~~-- 194 (360)
.+.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++|++.+++..++ +++
T Consensus 73 -----~~~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~ 147 (352)
T 3nf2_A 73 -----PEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRR 147 (352)
T ss_dssp -----GGGGHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 1357889999999999999999999999999999999999999999999999999999999998765 222
Q ss_pred -------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018156 195 -------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDIL 249 (360)
Q Consensus 195 -------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDil 249 (360)
+++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++
T Consensus 148 ~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~l 227 (352)
T 3nf2_A 148 LTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLL 227 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCccchhccCcccHHHHHHhhhC-h---HHHHHHhcC-------CCCchhHHHHHHHHHhcchHHHHHHH
Q 018156 250 DFTGTSASLGKASLTDLRNGIITAPILFAMEEF-P---QLRAFINSS-------SDNPANVDVILEYLGKSHGIQRTTEL 318 (360)
Q Consensus 250 D~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~-~---~~~~~l~~~-------~~~~~~~~~i~~li~~~g~i~~a~~~ 318 (360)
|++++++.+|||.|+||++||+|||+++|++.. + ++.+++.+. ..+++++++++++++++|++++++.+
T Consensus 228 d~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~ 307 (352)
T 3nf2_A 228 GIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADE 307 (352)
T ss_dssp HHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHH
Confidence 999999999999999999999999999999974 3 355566543 23567899999999999999999999
Q ss_pred HHHHHHHHHHHhccCCC-CCCccchHHHHHHHHHHHHHHhccC
Q 018156 319 ALKHASLAAAAIDSLPE-THDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 319 a~~~~~~A~~~L~~lp~-~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+++|.++|++.|+.+|+ ++ +|+.|..|++++++|+.
T Consensus 308 a~~~~~~A~~~L~~lp~~~~------~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 308 ARRQHTIAIEALDAVDMPDR------VRDRFTALADFVVVRKR 344 (352)
T ss_dssp HHHHHHHHHHHHTTSCCCHH------HHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhccc
Confidence 99999999999999998 45 99999999999999963
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=2.8e-65 Score=492.77 Aligned_cols=285 Identities=28% Similarity=0.440 Sum_probs=260.9
Q ss_pred CchhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHH
Q 018156 49 PFSLVGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQ 128 (360)
Q Consensus 49 ~~~~~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (360)
.+..+.+|++.|++.|++.+...+|.+.+++.|++..| |||+||.+++++++++|++ .+.+
T Consensus 6 ~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~l~l~~~~~~g~~-----------------~~~~ 66 (325)
T 3aqb_B 6 YKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDTQ-----------------KDDL 66 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHTTSSCC-----------------CHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------hHHH
Confidence 35678899999999999999888999999999999988 9999999999999999764 1357
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH--------------
Q 018156 129 QCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI-------------- 194 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~-------------- 194 (360)
..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|++.+++..+.+++
T Consensus 67 ~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ 146 (325)
T 3aqb_B 67 IRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGE 146 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999987665443
Q ss_pred -------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCC
Q 018156 195 -------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKA 261 (360)
Q Consensus 195 -------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~ 261 (360)
+++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||
T Consensus 147 ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~ 226 (325)
T 3aqb_B 147 FDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKP 226 (325)
T ss_dssp HHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSC
T ss_pred HHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCc
Confidence 6889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhccCcccHHHHHHhhhChH-----HH---HHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 018156 262 SLTDLRNGIITAPILFAMEEFPQ-----LR---AFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSL 333 (360)
Q Consensus 262 ~g~Dl~egk~Tlp~l~al~~~~~-----~~---~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~l 333 (360)
.|+||++||+|||++++++..+. +. +.+.+.. .+++++++++++.++ ++++++..+++|.++|++.|+.+
T Consensus 227 ~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~l 304 (325)
T 3aqb_B 227 VGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTS-DDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQL 304 (325)
T ss_dssp TTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTC-CHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999987542 33 3333222 257889999999999 99999999999999999999999
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 334 PETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 334 p~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
|+++ .|+.|..|++++++|++
T Consensus 305 p~~~------~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 305 QDSN------IKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp CCCH------HHHHHHHHHHHHTTTTC
T ss_pred CCcH------HHHHHHHHHHHHHhCcC
Confidence 9988 99999999999999975
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=1.3e-63 Score=485.96 Aligned_cols=283 Identities=24% Similarity=0.317 Sum_probs=248.7
Q ss_pred chhHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHH
Q 018156 50 FSLVGDELSLISMRLRSMVVAE-VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQ 128 (360)
Q Consensus 50 ~~~~~~dl~~v~~~l~~~~~~~-~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (360)
...+...++.|++.|++.+... +|.+.+++.|++..| |||+||.|++++++++|++. +.+
T Consensus 7 ~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~ 67 (358)
T 4dhd_A 7 SRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQW-----------------RPA 67 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSC--CCCHHHHHHHHHHHHHHSCC-----------------GGG
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHH
Confidence 3456678889999999999887 789999999999988 99999999999999998751 257
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCCh-HHH-------------
Q 018156 129 QCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT-EVI------------- 194 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~-~~~------------- 194 (360)
..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++|++.+...... +++
T Consensus 68 ~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~G 147 (358)
T 4dhd_A 68 LPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEG 147 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999988654321 111
Q ss_pred --------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q 018156 195 --------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 248 (360)
Q Consensus 195 --------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDi 248 (360)
+++|++++.+|||+||++||++|++++|++++..+.+++||.++|+||||+||+
T Consensus 148 Q~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ 227 (358)
T 4dhd_A 148 ERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDV 227 (358)
T ss_dssp HHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCccccCCCccchhccCcc-cHHHHHHhhhC-h----HHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHH
Q 018156 249 LDFTGTSASLGKASLTDLRNGII-TAPILFAMEEF-P----QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKH 322 (360)
Q Consensus 249 lD~~~~~~~~GK~~g~Dl~egk~-Tlp~l~al~~~-~----~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~ 322 (360)
+|++++++.+|||.|+||++||+ |||+++|++.. + .+.+++.+...+++++++++++++++|++++|+.++++|
T Consensus 228 lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~ 307 (358)
T 4dhd_A 228 LDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARY 307 (358)
T ss_dssp HHHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 99999999999999999999999 99999999974 3 356667666667889999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 323 ASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 323 ~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
.++|++.|+.||+++ .|..|++++++|++
T Consensus 308 ~~~A~~~L~~lp~~~---------~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 308 REEAERHLAKIPNNG---------TLKELLDFIVAREY 336 (358)
T ss_dssp HHHHHHHHTTSSSCH---------HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHcCCCCH---------HHHHHHHHHHhccc
Confidence 999999999999432 89999999999974
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=3.9e-63 Score=478.78 Aligned_cols=280 Identities=26% Similarity=0.264 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHH
Q 018156 53 VGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIA 132 (360)
Q Consensus 53 ~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA 132 (360)
.......|++.|.+.+...+|.+.+++.|++..| |||+||.|++++++++|++ .+.+..+|
T Consensus 5 ~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~~~~-----------------~~~~~~~A 65 (330)
T 1wmw_A 5 PEAIRQALQERLLARLDHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHGAP-----------------LEAGLEAA 65 (330)
T ss_dssp HHHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCC-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCC-----------------HHHHHHHH
Confidence 3456677888999988888899999999999988 9999999999999999864 24678999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC-----hHHH-------------
Q 018156 133 EITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH-----TEVI------------- 194 (360)
Q Consensus 133 ~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~-----~~~~------------- 194 (360)
+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|++.+++..+ .+++
T Consensus 66 ~avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G 145 (330)
T 1wmw_A 66 TALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYG 145 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887432 2222
Q ss_pred ----------------HHHHHhhhhhhhHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccc
Q 018156 195 ----------------MECYMQKTYNKTAAL-VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 257 (360)
Q Consensus 195 ----------------~~~Y~~~~~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~ 257 (360)
+++|++++++|||+| |++||++|++++|++++.. +++||.++|+||||+||++|++++++
T Consensus 146 Q~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~- 222 (330)
T 1wmw_A 146 QHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA- 222 (330)
T ss_dssp HHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-
Confidence 367999999999999 9999999999999988766 99999999999999999999999999
Q ss_pred cCCCccchhccCcccHHHHHHhhhCh-HHHHHHhcCC----CC--chhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 018156 258 LGKASLTDLRNGIITAPILFAMEEFP-QLRAFINSSS----DN--PANVDVILEYLGKSHGIQRTTELALKHASLAAAAI 330 (360)
Q Consensus 258 ~GK~~g~Dl~egk~Tlp~l~al~~~~-~~~~~l~~~~----~~--~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L 330 (360)
+||+.|+||++||+|||++++++..+ +.++.+.+.+ .+ +++++++++++.++|++++++.++++|.++|.+.|
T Consensus 223 ~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L 302 (330)
T 1wmw_A 223 YGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALL 302 (330)
T ss_dssp CSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754 3444443322 22 57889999999999999999999999999999999
Q ss_pred c----cCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 331 D----SLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 331 ~----~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+ .+|.++ .++.|..|++++++|++
T Consensus 303 ~~~i~~lp~~~------~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 303 EAAFQDLPGKE------ALDHLRGLLAALVERRA 330 (330)
T ss_dssp HTGGGGCSCHH------HHHHHHHHHHHHHHC--
T ss_pred HHHhhcCCCcH------HHHHHHHHHHHHHhccC
Confidence 9 999877 89999999999999975
No 12
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=9.9e-62 Score=475.54 Aligned_cols=296 Identities=23% Similarity=0.284 Sum_probs=238.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhhcCChh---HHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhh
Q 018156 46 HLDPFSLVGDELSLISMRLRSMVVAEVPE---LASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLIL 122 (360)
Q Consensus 46 ~~~~~~~~~~dl~~v~~~l~~~~~~~~~~---l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~ 122 (360)
+.+....+.++|+.+.......+....|. +.+.+.|++..| |||+||+|++++++++|+..+..
T Consensus 18 ~~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~~~----------- 84 (380)
T 3lk5_A 18 LDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNG--GKRIRPLYAWAGFLAAQGHKNSS----------- 84 (380)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHTTSCCS-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHcCCCcccc-----------
Confidence 44455667888887776666655555554 566677777778 99999999999999998631110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccc----------------cchHHHHHHHHHHHHHHHHHHH
Q 018156 123 DLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSV----------------MGNKLAILAGDLLISRALVALA 186 (360)
Q Consensus 123 ~~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~----------------~G~~~Ail~Gd~L~~~a~~~l~ 186 (360)
...+.+..+|+++||||+||||||||||+|++|||+||+|++ ||++.|||+||||+++|+++++
T Consensus 85 ~~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~ 164 (380)
T 3lk5_A 85 EKLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQ 164 (380)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 013578899999999999999999999999999999999997 6999999999999999999999
Q ss_pred cCCCh-H----HH---------------------------HHHHHhhhhhhhHHH-HHHHHHHHHHhcCCCHHHHHHHHH
Q 018156 187 SLKHT-E----VI---------------------------MECYMQKTYNKTAAL-VSNSCKAVAYLSGQREEVATLAFE 233 (360)
Q Consensus 187 ~~~~~-~----~~---------------------------~~~Y~~~~~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~ 233 (360)
+...+ + ++ +++|++++++|||+| |++||++|++++|++++..+.+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~ 244 (380)
T 3lk5_A 165 DSGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLH 244 (380)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 86432 1 11 678999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhC----hHHHHHHhcCC---CCchhHHHHHHHH
Q 018156 234 YGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF----PQLRAFINSSS---DNPANVDVILEYL 306 (360)
Q Consensus 234 ~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~----~~~~~~l~~~~---~~~~~~~~i~~li 306 (360)
||.++|+||||+||++|+++|++.+|||.|+||++||+|||++++++.. |+.++.+.+.+ .++++++++++++
T Consensus 245 ~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li 324 (380)
T 3lk5_A 245 YGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHI 324 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999874 34444443322 3567899999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHHHhcc
Q 018156 307 GKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 359 (360)
Q Consensus 307 ~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 359 (360)
+++|++++++.++++|.++|++.|+.+|.++. +|+.|..|++++..|.
T Consensus 325 ~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~-----~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 325 RATGAEEEVEQRISQLTESGLAHLDDVDIPDE-----VRAQLRALAIRSTERR 372 (380)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHH-----HHHHHHHHHHHHHC--
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999996431 9999999999999885
No 13
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1.8e-62 Score=467.35 Aligned_cols=255 Identities=25% Similarity=0.374 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHH
Q 018156 53 VGDELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIA 132 (360)
Q Consensus 53 ~~~dl~~v~~~l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA 132 (360)
+.+|++.|++.|++.+.+..| +++.|++..| |||+||.+++++++++|++. .+.+..+|
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~---~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~----------------~~~~~~~A 67 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP---EQIMKDLPLY--GKMLRVRLSILSFKNRGVEI----------------GEDAISSL 67 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC---HHHHTTSCCC--CCCHHHHHHHHHHHHHTCCC----------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH---HHHHHHHhCC--CCcHHHHHHHHHHHHcCCCC----------------hhHHHHHH
Confidence 678999999999999877766 8999999888 99999999999999998621 13578899
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH------------------
Q 018156 133 EITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI------------------ 194 (360)
Q Consensus 133 ~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~------------------ 194 (360)
+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.+++..+.+++
T Consensus 68 ~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl 147 (299)
T 1v4e_A 68 AALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQ 147 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887665433
Q ss_pred --------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchh
Q 018156 195 --------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDL 266 (360)
Q Consensus 195 --------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl 266 (360)
+++|++++.+|||+||++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|||.|+||
T Consensus 148 ~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl 223 (299)
T 1v4e_A 148 LSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDL 223 (299)
T ss_dssp HHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCC
T ss_pred HccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHh
Confidence 5789999999999999999999999999877 78999999999999999999999999 99999999999
Q ss_pred ccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 267 RNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 267 ~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
++||+|||++++++..+.+++++.+ ++++++++++.++|++++++..+++|.++|.+.|+.||+..
T Consensus 224 ~egK~T~p~l~al~~~~~l~~~l~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 224 KNGVASFPLVTAMEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp TTTTCCHHHHHHHHHCHHHHHHHHT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred hCCCchHHHHHHHHhChHHHHHHhH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999987667777754 57889999999999999999999999999999999999877
No 14
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=2.1e-61 Score=462.69 Aligned_cols=271 Identities=25% Similarity=0.342 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHhhc-CChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHH
Q 018156 57 LSLISMRLRSMVVA-EVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEIT 135 (360)
Q Consensus 57 l~~v~~~l~~~~~~-~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~v 135 (360)
++.|++.|.+.+.. ..|.+.+ .|.+..| |||+||.|++++++.. .. .-..+.+..+|+++
T Consensus 6 ~~~i~~~l~~~~~~~~~~~~~~--~y~~~~g--GKrlRp~l~l~~~~~~-~~--------------~~~~~~~~~~A~ai 66 (315)
T 3tc1_A 6 LKAIQNKIASWIKEIESGFIDE--LFSKIGP--SKMLRSKLMLALLNEK-TD--------------AILLDKALNLCTIV 66 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHH--HHTTCCC--CCCHHHHHHHTTCCTT-CC--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHHHHH--HHHhcCC--cccHHHHHHHHHhccC-cc--------------ccchhhHHHHHHHH
Confidence 56777788887763 3344433 5777778 9999999999987721 11 01125678999999
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---------------------
Q 018156 136 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI--------------------- 194 (360)
Q Consensus 136 EllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~--------------------- 194 (360)
||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||+.+++.+ ++++
T Consensus 67 EliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~ 145 (315)
T 3tc1_A 67 EMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVG 145 (315)
T ss_dssp HHHHHHHHHHHHTC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999998865 4333
Q ss_pred ------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhcc
Q 018156 195 ------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRN 268 (360)
Q Consensus 195 ------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~e 268 (360)
+++|++++++|||+||++||++|++++|++ .+.+++||.++|+||||+||++|++++++.+|||.|+||++
T Consensus 146 ~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~e 222 (315)
T 3tc1_A 146 ECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKE 222 (315)
T ss_dssp TSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGG
T ss_pred CCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHc
Confidence 678999999999999999999999999998 57899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHhhhC-hHHHHHHhcCCC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHH
Q 018156 269 GIITAPILFAMEEF-PQLRAFINSSSD--NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNAR 345 (360)
Q Consensus 269 gk~Tlp~l~al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~ 345 (360)
||+|||+++|++.. ++.++.+.+.+. ++++++++++++.++|++++++.++++|.++|++.|+.||+++ +|
T Consensus 223 gK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~------~r 296 (315)
T 3tc1_A 223 GKTTLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLI------LE 296 (315)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHH------HH
T ss_pred CChhHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HH
Confidence 99999999999984 555555544333 6778999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHH
Q 018156 346 TALVHITQKII 356 (360)
Q Consensus 346 ~~L~~l~~~~~ 356 (360)
+.|..|++++.
T Consensus 297 ~~L~~l~~~~~ 307 (315)
T 3tc1_A 297 KLAQDVISRTF 307 (315)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 15
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=7.2e-62 Score=463.83 Aligned_cols=265 Identities=23% Similarity=0.267 Sum_probs=227.4
Q ss_pred HHHHhhcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 018156 64 LRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASL 143 (360)
Q Consensus 64 l~~~~~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asL 143 (360)
+++.+.+.+|.+.+++.|++..| |||+||.|++++++++|.+ .+.+..+|+++||||+|||
T Consensus 2 ~~k~~~~~~~~l~~~~~y~~~~g--GKr~Rp~l~l~~~~~~~~~-----------------~~~~~~~A~avEliH~asL 62 (301)
T 2q80_A 2 MEKTQETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVP-----------------EDKLQIIIEVTEMLHNASL 62 (301)
T ss_dssp -----CCHHHHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHH
Confidence 45667778889999999999988 9999999999999999864 2467889999999999999
Q ss_pred hhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH----------------------------H
Q 018156 144 IHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI----------------------------M 195 (360)
Q Consensus 144 ihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~----------------------------~ 195 (360)
|||||||+|++|||+||+|.+||++.|||+||||+++|++.+++..+++++ +
T Consensus 63 iHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~ 142 (301)
T 2q80_A 63 LIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTE 142 (301)
T ss_dssp HHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHccccCCCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Confidence 999999999999999999999999999999999999999999987654322 6
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHH
Q 018156 196 ECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPI 275 (360)
Q Consensus 196 ~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~ 275 (360)
++|++++++|||+||+++|++|++++|.++ .+.+||.++|+||||+||++|++++++.+|||.|+||++||+|||+
T Consensus 143 ~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~ 218 (301)
T 2q80_A 143 EEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 218 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHH
Confidence 789999999999999999999999999873 4899999999999999999999999999999999999999999999
Q ss_pred HHHhhhCh---HHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHH
Q 018156 276 LFAMEEFP---QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHIT 352 (360)
Q Consensus 276 l~al~~~~---~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~ 352 (360)
+++++..+ ++.+.+.+...+.+..+.++++++++|++++++..+++|.++|++.|+.+|.++ . |..++
T Consensus 219 i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~------~---L~~l~ 289 (301)
T 2q80_A 219 IHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP------E---LVALV 289 (301)
T ss_dssp HHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH------H---HHHHH
T ss_pred HHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH------H---HHHHH
Confidence 99998754 466666655443334445999999999999999999999999999999999776 3 88999
Q ss_pred HHHHhccC
Q 018156 353 QKIITRNK 360 (360)
Q Consensus 353 ~~~~~R~~ 360 (360)
+++..|.|
T Consensus 290 ~~l~~~~~ 297 (301)
T 2q80_A 290 KHLSKMFK 297 (301)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhc
Confidence 99988864
No 16
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=9.8e-62 Score=470.41 Aligned_cols=277 Identities=20% Similarity=0.284 Sum_probs=212.1
Q ss_pred HHHHHHHHh---hcCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHH
Q 018156 60 ISMRLRSMV---VAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITE 136 (360)
Q Consensus 60 v~~~l~~~~---~~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vE 136 (360)
|+..+.+.. ...++.+.+++.|++..| |||+||.|++++++++|.+ .+.+..+|+++|
T Consensus 10 v~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~~~~-----------------~~~~~~~A~avE 70 (340)
T 2e8v_A 10 IDELINNDPVWSSQNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLP-----------------KDQLAIVSQIVE 70 (340)
T ss_dssp HHHHHTSCCCCCHHHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHH
T ss_pred HHHHHHhcccccccChHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHH
Confidence 555565554 456678999999999988 9999999999999999864 246788999999
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChH-----HH-----------------
Q 018156 137 MIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTE-----VI----------------- 194 (360)
Q Consensus 137 llH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~-----~~----------------- 194 (360)
|||+||||||||||+|++|||+||+|.+||++.|||+||||+++|++.+++..+++ ++
T Consensus 71 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ld 150 (340)
T 2e8v_A 71 LLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLD 150 (340)
T ss_dssp HHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876644 22
Q ss_pred -------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCC
Q 018156 195 -------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKA 261 (360)
Q Consensus 195 -------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~ 261 (360)
+++|++++++|||+||+++|++|++++|+++ ..+.+++||.++|+||||+||++|++++++.+|||
T Consensus 151 l~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~ 229 (340)
T 2e8v_A 151 IYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKG 229 (340)
T ss_dssp HHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCC
T ss_pred HHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCC
Confidence 4679999999999999999999999999987 47889999999999999999999999999999999
Q ss_pred ccchhccCcccHHHHHHhhhChH---------HHHHHhcCCCCchhHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH--
Q 018156 262 SLTDLRNGIITAPILFAMEEFPQ---------LRAFINSSSDNPANVDVILEYLG-KSHGIQRTTELALKHASLAAAA-- 329 (360)
Q Consensus 262 ~g~Dl~egk~Tlp~l~al~~~~~---------~~~~l~~~~~~~~~~~~i~~li~-~~g~i~~a~~~a~~~~~~A~~~-- 329 (360)
.|+||++||+|||+++|++..+. +.+++.+...+.+..+++++++. ++|++++++.++++|.++|++.
T Consensus 230 ~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~ 309 (340)
T 2e8v_A 230 FAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNE 309 (340)
T ss_dssp TTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--
T ss_pred chhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999987432 55566555444444458999999 9999999999999999999999
Q ss_pred ---hccCCCCCCccchHHHHHHHHHHHHHHh
Q 018156 330 ---IDSLPETHDVDATNARTALVHITQKIIT 357 (360)
Q Consensus 330 ---L~~lp~~~~~~~~~~~~~L~~l~~~~~~ 357 (360)
|+.||+++.. ...+|+.|..|++++.+
T Consensus 310 ~~~L~~lp~~~~~-~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 310 NKYLPDLASHSDT-ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp -------------------------------
T ss_pred cccHhhCCCCccc-cHHHHHHHHHHHHHHHh
Confidence 9999987510 11278999999998865
No 17
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1.3e-60 Score=457.65 Aligned_cols=257 Identities=26% Similarity=0.338 Sum_probs=214.5
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHhhcC---ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchh
Q 018156 44 KKHLDPFSLVGDELSLISMRLRSMVVAE---VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTL 120 (360)
Q Consensus 44 ~~~~~~~~~~~~dl~~v~~~l~~~~~~~---~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~ 120 (360)
.++.+++..++++++.|++.|.+.+... ++.+.+++.|.+..| |||+||.|++++++++|++
T Consensus 28 ~~~~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~------------- 92 (324)
T 3uca_A 28 KTLEDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVG--GKRIRPILMLLSYYIYKSD------------- 92 (324)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHTTCSC-------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-------------
Confidence 3456677889999999999999999865 778999999999889 9999999999999999875
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCC--C----hH
Q 018156 121 ILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK--H----TE 192 (360)
Q Consensus 121 ~~~~~~~~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~--~----~~ 192 (360)
.+.+..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||+|+++||+.+++.. + .+
T Consensus 93 ----~~~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~ 168 (324)
T 3uca_A 93 ----YKKILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALK 168 (324)
T ss_dssp ----GGGGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Confidence 125678999999999999999999 99999999999999999999999999999999998887632 1 11
Q ss_pred HH-----------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Q 018156 193 VI-----------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQ 243 (360)
Q Consensus 193 ~~-----------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQ 243 (360)
++ +++|.+++++|||+||++||++|++++|++++..+.+++||.++|+|||
T Consensus 169 ~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQ 248 (324)
T 3uca_A 169 ATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQ 248 (324)
T ss_dssp HHHHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 5789999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHH
Q 018156 244 LIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHA 323 (360)
Q Consensus 244 I~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~ 323 (360)
|+||++|++++++.+||+.|+|+++||+|||++++ +++++..++++.
T Consensus 249 I~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~a---------------------------------l~~a~~~a~~~~ 295 (324)
T 3uca_A 249 IKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFG---------------------------------LEECKKKCVNIT 295 (324)
T ss_dssp HHHHHHHHCCC-----------------CHHHHHC---------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHH---------------------------------HHHHHHHHHHHH
Confidence 99999999999999999999999999999999994 578999999999
Q ss_pred HHHHHHhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 324 SLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 324 ~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
++|++.|+.||.+. +.|..|++++++|++
T Consensus 296 ~~A~~~L~~l~~~~--------~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 296 EECIEILSSIKGNT--------EPLKVLTMKLLERKF 324 (324)
T ss_dssp HHHHHHHHTSSSCC--------HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCcH--------HHHHHHHHHHHhccC
Confidence 99999999999755 789999999999985
No 18
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=1.2e-59 Score=449.69 Aligned_cols=251 Identities=28% Similarity=0.372 Sum_probs=203.6
Q ss_pred chhHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHH
Q 018156 50 FSLVGDELSLISMRLRSMVVAE--VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRR 127 (360)
Q Consensus 50 ~~~~~~dl~~v~~~l~~~~~~~--~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
...+......|++.|.+.+... ++.+.+++.|.+..| |||+||.|++++++++|++ .+.
T Consensus 6 ~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~-----------------~~~ 66 (317)
T 4f62_A 6 KQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNG--GKRIRPMLTYASAQLVGDI-----------------SSL 66 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-C--CCCHHHHHHHHHHHHHSCC-----------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCC-----------------HHH
Confidence 3457778888999999988764 678999999999888 9999999999999999875 246
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC--h----HHH-----
Q 018156 128 QQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH--T----EVI----- 194 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~--~----~~~----- 194 (360)
+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+.+++..+ + +++
T Consensus 67 ~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~ 146 (317)
T 4f62_A 67 TDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVV 146 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 889999999999999999999 999999999999999999999999999999999999988632 1 111
Q ss_pred -----------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 018156 195 -----------------------MECYMQKTYNKTAALVSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILD 250 (360)
Q Consensus 195 -----------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DDilD 250 (360)
+++|.+++.+|||+||+++|++|++++| ++++..+.+++||.++|+||||+||++|
T Consensus 147 a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD 226 (317)
T 4f62_A 147 ASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIID 226 (317)
T ss_dssp HHSTTTHHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999 8999999999999999999999999999
Q ss_pred ccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 018156 251 FTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAI 330 (360)
Q Consensus 251 ~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L 330 (360)
++++++.+||+.|+|+++||+|||+++ ++++++..++++.++|++.|
T Consensus 227 ~~gd~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~~A~~~L 273 (317)
T 4f62_A 227 LTSDTETLGKTQFSDAEANKATYPKLL---------------------------------GLDGAKALVVRLHEQAIAQI 273 (317)
T ss_dssp TC----------------CCCCHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChHhhCCCcchHHhcCCCcHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 56889999999999999999
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 331 DSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 331 ~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+.||+ .++.|..|++++++|++
T Consensus 274 ~~l~~--------~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 274 SEFGD--------KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp GGGGG--------GGHHHHHHHHHHHC---
T ss_pred HhCch--------hHHHHHHHHHHHHHhcc
Confidence 99985 34899999999999974
No 19
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=9.5e-60 Score=451.56 Aligned_cols=251 Identities=27% Similarity=0.321 Sum_probs=214.6
Q ss_pred chhHHHHHHHHHHHHHHHhhcC---ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHH
Q 018156 50 FSLVGDELSLISMRLRSMVVAE---VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRR 126 (360)
Q Consensus 50 ~~~~~~dl~~v~~~l~~~~~~~---~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (360)
...+.+....|++.|.+.+... ++.+.+++.|.+..| |||+||.|++++++++|++ .+
T Consensus 10 ~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~g--GKrlRP~L~l~~~~~~g~~-----------------~~ 70 (324)
T 3ts7_A 10 SDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGG--GKRMRPLLTYATGQTIGVA-----------------AD 70 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCC-----------------GG
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------HH
Confidence 3467788889999999988753 578999999999989 9999999999999999875 13
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCC--C--h----HHH--
Q 018156 127 RQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK--H--T----EVI-- 194 (360)
Q Consensus 127 ~~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~--~--~----~~~-- 194 (360)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+.+++.. + + +++
T Consensus 71 ~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~ 150 (324)
T 3ts7_A 71 LLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIET 150 (324)
T ss_dssp GTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHH
Confidence 5788999999999999999999 99999999999999999999999999999999999998864 2 1 111
Q ss_pred --------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhhhh
Q 018156 195 --------------------------MECYMQKTYNKTAALVSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDD 247 (360)
Q Consensus 195 --------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DD 247 (360)
+++|++++++|||+||+++|++|++++| ++++..+.+++||.++|+||||+||
T Consensus 151 la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DD 230 (324)
T 3ts7_A 151 LAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDD 230 (324)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999 8999999999999999999999999
Q ss_pred hhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 018156 248 ILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAA 327 (360)
Q Consensus 248 ilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~ 327 (360)
++|++++++.+||+.|+|+++||+|||+++ ++++++..++++.++|+
T Consensus 231 iLD~~~d~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~~A~ 277 (324)
T 3ts7_A 231 ILDEESDTQTLGKTRGKDRDHNKPNYPALL---------------------------------GLSGAKEKAEEMHEAAL 277 (324)
T ss_dssp HHHHTCC---------------CCCHHHHH---------------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCCccchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 46889999999999999
Q ss_pred HHhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 328 AAIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 328 ~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+.|+.||++. +.|..|++++++|++
T Consensus 278 ~~L~~l~~~~--------~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 278 ESLAGFGPEA--------DLLRELARFIIQRQS 302 (324)
T ss_dssp HTTTTCCGGG--------HHHHHHHHHHHHTSS
T ss_pred HHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 9999998754 789999999999974
No 20
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=2.7e-59 Score=458.30 Aligned_cols=268 Identities=19% Similarity=0.170 Sum_probs=233.3
Q ss_pred hhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 018156 73 PELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDA 152 (360)
Q Consensus 73 ~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s 152 (360)
+.+.++++|.. .| |||+||++++++++++|++... .++..+.+..+|+++||||+||||||||||+|
T Consensus 64 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~a~~~A~avEliH~asLIHDDImD~s 130 (374)
T 2qis_A 64 ARLKEVLEYNA-IG--GKYNRGLTVVVAFRELVEPRKQ----------DADSLQRAWTVGWCVELLQAFFLVADDIMDSS 130 (374)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHSCGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhc-CC--CcchHHHHHHHHHHHhCCCCcc----------chHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Confidence 46889999887 48 9999999999999999863100 01223357889999999999999999999999
Q ss_pred CCCCCCCCcccccchH-HHHHHHHHHHHHHHHHHHcC-----CChHHH--------------------------------
Q 018156 153 DTRRGIGSLSSVMGNK-LAILAGDLLISRALVALASL-----KHTEVI-------------------------------- 194 (360)
Q Consensus 153 ~~RRG~pt~~~~~G~~-~Ail~Gd~L~~~a~~~l~~~-----~~~~~~-------------------------------- 194 (360)
++|||+||+|++||++ +||++||++++.+|.++++. .+.+++
T Consensus 131 ~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 210 (374)
T 2qis_A 131 LTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFT 210 (374)
T ss_dssp CEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCC
T ss_pred CCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCC
Confidence 9999999999999999 99999999999999888753 111111
Q ss_pred HHHHHhhhhhhhHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCccc
Q 018156 195 MECYMQKTYNKTAAL-VSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIIT 272 (360)
Q Consensus 195 ~~~Y~~~~~~KTa~L-~~~~~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~T 272 (360)
+++|++++.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+||++||+|
T Consensus 211 ~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T 289 (374)
T 2qis_A 211 EKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCS 289 (374)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCC
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCcc
Confidence 468999999999999 9999999999999 99999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhhC-hHHHHHHhcCCC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHH
Q 018156 273 APILFAMEEF-PQLRAFINSSSD--NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALV 349 (360)
Q Consensus 273 lp~l~al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~ 349 (360)
||++++++.. ++.++.+.+.+. ++++++++++++.++|+.++++.++++|.++|++.|+.||.++ .++.|.
T Consensus 290 ~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~------~k~~L~ 363 (374)
T 2qis_A 290 WLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL------PPAVFL 363 (374)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS------CHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHH
Confidence 9999999985 456666665553 3668899999999999999999999999999999999999988 899999
Q ss_pred HHHHHHHhccC
Q 018156 350 HITQKIITRNK 360 (360)
Q Consensus 350 ~l~~~~~~R~~ 360 (360)
.|++++++|+|
T Consensus 364 ~l~~~i~~R~k 374 (374)
T 2qis_A 364 GLARKIYKRRK 374 (374)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHcCcC
Confidence 99999999986
No 21
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.4e-59 Score=447.48 Aligned_cols=250 Identities=26% Similarity=0.326 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcC---ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHH
Q 018156 51 SLVGDELSLISMRLRSMVVAE---VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRR 127 (360)
Q Consensus 51 ~~~~~dl~~v~~~l~~~~~~~---~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
.-+..+++.|++.|.+.+... ++.+.+++.|.+..| |||+||.|++++++++|++ .+.
T Consensus 11 ~~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~-----------------~~~ 71 (302)
T 3p8r_A 11 EALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLG--GKRARPYLVYITGQMLGCE-----------------LSD 71 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSC--CSCHHHHHHHHHHHTTTCC-----------------GGG
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------HHH
Confidence 357889999999999998764 568999999999988 9999999999999999875 135
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCC--C--h----HHH---
Q 018156 128 QQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK--H--T----EVI--- 194 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~--~--~----~~~--- 194 (360)
+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+.+++.. + + +++
T Consensus 72 ~~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l 151 (302)
T 3p8r_A 72 LDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQAL 151 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 788999999999999999999 99999999999999999999999999999999999998864 1 1 111
Q ss_pred -------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhhhhh
Q 018156 195 -------------------------MECYMQKTYNKTAALVSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDI 248 (360)
Q Consensus 195 -------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DDi 248 (360)
+++|++|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||+
T Consensus 152 ~~a~g~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 152 AEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999 78888889999999999999999999
Q ss_pred hcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 018156 249 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAA 328 (360)
Q Consensus 249 lD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~ 328 (360)
+|++++++.+||+.|+|+++||+|||+++ ++++++..+++|.++|++
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~a~~~~~~A~~ 278 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKSTYPALL---------------------------------GLEGAQQKAHTLLQEALL 278 (302)
T ss_dssp HHHTTC---------------CCCHHHHH---------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCCcchHHhcCCchHHHHH---------------------------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 467899999999999999
Q ss_pred HhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 329 AIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 329 ~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
.|+.||.+. +.|..|++++++|++
T Consensus 279 ~L~~l~~~~--------~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 279 ALEAIPYNT--------EHLEEFARYVVERKN 302 (302)
T ss_dssp HHTTCSSCT--------HHHHHHHHHHHHCCC
T ss_pred HHHhCCccH--------HHHHHHHHHHHhccC
Confidence 999999765 789999999999975
No 22
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.8e-59 Score=446.88 Aligned_cols=250 Identities=29% Similarity=0.384 Sum_probs=214.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcC---ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHH
Q 018156 51 SLVGDELSLISMRLRSMVVAE---VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRR 127 (360)
Q Consensus 51 ~~~~~dl~~v~~~l~~~~~~~---~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
..+......|++.|.+.+... ++.+.+++.|.+..| |||+||.|++++++++|++ .+.
T Consensus 5 ~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~-----------------~~~ 65 (304)
T 3lsn_A 5 AYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNG--GKRVRPLLAYAACEALGGK-----------------PEQ 65 (304)
T ss_dssp HHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCC-----------------GGG
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCC-----------------HHH
Confidence 456777888999999998765 468999999999888 9999999999999999875 135
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCC----ChH----HH---
Q 018156 128 QQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK----HTE----VI--- 194 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~----~~~----~~--- 194 (360)
+..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||+|+++||+.+++.. +++ ++
T Consensus 66 ~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l 145 (304)
T 3lsn_A 66 ANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTL 145 (304)
T ss_dssp GHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHH
Confidence 788999999999999999999 99999999999999999999999999999999999999864 221 11
Q ss_pred -------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhhhhhh
Q 018156 195 -------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQ-REEVATLAFEYGKNLGLAYQLIDDI 248 (360)
Q Consensus 195 -------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~-~~~~~~~l~~~G~~lG~afQI~DDi 248 (360)
+++|.+|+.+|||+||++||++|++++|+ +++..+.+++||.++|+||||+||+
T Consensus 146 ~~a~~~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDi 225 (304)
T 3lsn_A 146 AQAAGPAGMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDI 225 (304)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHchhhHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999 8888999999999999999999999
Q ss_pred hcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 018156 249 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAA 328 (360)
Q Consensus 249 lD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~ 328 (360)
+|++++++.+||+.|+|+++||+|||+++ ++++++..++++.++|++
T Consensus 226 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~a~~~~~~A~~ 272 (304)
T 3lsn_A 226 LDVESDTATLGKRQGADIARDKPTYPALL---------------------------------GLAAAKEYALELRDQALH 272 (304)
T ss_dssp HHHHHHHHHC------------CCHHHHH---------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HhccCChHHhCCCcccHHhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 468899999999999999
Q ss_pred HhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 329 AIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 329 ~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
.|+.||+. ++.|..|++++++|++
T Consensus 273 ~L~~l~~~--------~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 273 ALRPFDAA--------AEPLRELARYIVERRS 296 (304)
T ss_dssp HTTTSCGG--------GHHHHHHHHHHHC---
T ss_pred HHHhCchh--------HHHHHHHHHHHHHhcc
Confidence 99999853 4799999999999974
No 23
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.9e-59 Score=446.03 Aligned_cols=250 Identities=30% Similarity=0.401 Sum_probs=210.1
Q ss_pred hHHHHHHHHHHHHHHHhhc--CChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHH
Q 018156 52 LVGDELSLISMRLRSMVVA--EVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQ 129 (360)
Q Consensus 52 ~~~~dl~~v~~~l~~~~~~--~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (360)
.-+.++..|++.|.+.+.. .++.+.+++.|.+..| |||+||.|++++++++|++.. +.+.
T Consensus 13 ~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------~~~~ 74 (302)
T 3p8l_A 13 FSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQKEME----------------TQDY 74 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC----------------HHHH
T ss_pred hhHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCcc----------------HHHH
Confidence 3467788888899988875 3678999999999988 999999999999999987521 2578
Q ss_pred HHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCCh-----HHH--------
Q 018156 130 CIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT-----EVI-------- 194 (360)
Q Consensus 130 ~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~-----~~~-------- 194 (360)
.+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||+|+++||+.+++...+ +++
T Consensus 75 ~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g 154 (302)
T 3p8l_A 75 QVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAG 154 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 8999999999999999999 9999999999999999999999999999999999999875321 111
Q ss_pred --------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCC
Q 018156 195 --------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGT 254 (360)
Q Consensus 195 --------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~ 254 (360)
+++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++
T Consensus 155 ~~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d 234 (302)
T 3p8l_A 155 NQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATST 234 (302)
T ss_dssp TTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 018156 255 SASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLP 334 (360)
Q Consensus 255 ~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 334 (360)
++.+||+.|+|+++||+|||+++ +++.++..++++.++|++.|+.||
T Consensus 235 ~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~~~~~~~~A~~~L~~~~ 281 (302)
T 3p8l_A 235 EADLGKKVGRDEALNKSTYPALL---------------------------------GIAGAKDALTHQLAEGSAVLEKIK 281 (302)
T ss_dssp ----------------CCHHHHH---------------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhhHHhcCCCcHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999 457899999999999999999997
Q ss_pred C---CCCccchHHHHHHHHHHHHHHhc
Q 018156 335 E---THDVDATNARTALVHITQKIITR 358 (360)
Q Consensus 335 ~---~~~~~~~~~~~~L~~l~~~~~~R 358 (360)
+ ++ .++.|..|++++++|
T Consensus 282 ~~~~~~------~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 282 ANVPNF------SEEHLANLLTQLQLR 302 (302)
T ss_dssp HHCSSC------CHHHHHHHHHHTSCC
T ss_pred cccCCh------hHHHHHHHHHHHhhC
Confidence 5 55 678999999999987
No 24
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=1.6e-59 Score=447.45 Aligned_cols=253 Identities=28% Similarity=0.379 Sum_probs=228.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcC---ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHH
Q 018156 51 SLVGDELSLISMRLRSMVVAE---VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRR 127 (360)
Q Consensus 51 ~~~~~dl~~v~~~l~~~~~~~---~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
..+.++++.|++.|++.+... ++.+.+++.|.+..| |||+||.|++++++++|++ .+.
T Consensus 5 ~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~-----------------~~~ 65 (299)
T 1rqj_A 5 QQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLG--GKRLRPFLVYATGHMFGVS-----------------TNT 65 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTCC-----------------HHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------HHH
Confidence 456778889999999988764 678999999999888 9999999999999999864 246
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCC----Ch----HHH---
Q 018156 128 QQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK----HT----EVI--- 194 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~----~~----~~~--- 194 (360)
+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+.+++.. ++ +++
T Consensus 66 ~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l 145 (299)
T 1rqj_A 66 LDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISEL 145 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Confidence 789999999999999999999 99999999999999999999999999999999999998741 11 111
Q ss_pred -------------------------HHHHHhhhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q 018156 195 -------------------------MECYMQKTYNKTAALVSNSCKAVAYL-SGQREEVATLAFEYGKNLGLAYQLIDDI 248 (360)
Q Consensus 195 -------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~l-ag~~~~~~~~l~~~G~~lG~afQI~DDi 248 (360)
+++|++++++|||+||++||++|+++ +|++++..+.+++||.++|+||||+||+
T Consensus 146 ~~~~g~~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 146 ASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDI 225 (299)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999 9988888999999999999999999999
Q ss_pred hcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 018156 249 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAA 328 (360)
Q Consensus 249 lD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~ 328 (360)
+|++++++.+||+.|+|+++||+|||+++++ ++++..+++|.++|++
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~A~~ 272 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDDARQ 272 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCCCHHHHHCH---------------------------------HHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCCcHHHHHHH---------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999954 5688999999999999
Q ss_pred HhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 329 AIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 329 ~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
.|+.+|.++. .++.|..|++++++|++
T Consensus 273 ~L~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 273 SLKQLAEQSL-----DTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHHTTTC-----CCHHHHHHHHHHHHCCC
T ss_pred HHHhCCCCcH-----HHHHHHHHHHHHHhccC
Confidence 9999987331 56899999999999975
No 25
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=5.3e-59 Score=448.90 Aligned_cols=251 Identities=25% Similarity=0.323 Sum_probs=209.6
Q ss_pred chhHHHHHHHHHHHHHHHhhc--------CChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhh
Q 018156 50 FSLVGDELSLISMRLRSMVVA--------EVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLI 121 (360)
Q Consensus 50 ~~~~~~dl~~v~~~l~~~~~~--------~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~ 121 (360)
...+.++++.|++.|++.+.. .++.+.+++.|.+..| |||+||.|++++++++|++
T Consensus 40 ~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~-------------- 103 (335)
T 2h8o_A 40 ETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNG--GKRLRPFLVIESVALLGGD-------------- 103 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTS--CSCHHHHHHHHHHHHTTCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC--------------
Confidence 346677889999999998866 4678999999999888 9999999999999999864
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcC--C-Ch----H
Q 018156 122 LDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL--K-HT----E 192 (360)
Q Consensus 122 ~~~~~~~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~--~-~~----~ 192 (360)
.+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+++++. . .+ +
T Consensus 104 ---~~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~ 180 (335)
T 2h8o_A 104 ---AEAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAA 180 (335)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Confidence 235788999999999999999999 9999999999999999999999999999999999999986 1 11 1
Q ss_pred HH----------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhh
Q 018156 193 VI----------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQL 244 (360)
Q Consensus 193 ~~----------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI 244 (360)
++ +++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||||
T Consensus 181 ~~~~ls~a~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI 260 (335)
T 2h8o_A 181 LVISLARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQL 260 (335)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 56899999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHH
Q 018156 245 IDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHAS 324 (360)
Q Consensus 245 ~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~ 324 (360)
+||++|++++++.+||+.|+|+++||+|||++++ +++++..+++|.+
T Consensus 261 ~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------le~a~~~a~~~~~ 307 (335)
T 2h8o_A 261 ADDLLDLTADAATMGKATGKDAARGKGTLVALRG---------------------------------EAWAREKLQEQVA 307 (335)
T ss_dssp HHHHHHHC-----------------CCCHHHHHC---------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999994 5789999999999
Q ss_pred HHHHHhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 325 LAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 325 ~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+|++.|+.||. .++.|..|++++++|++
T Consensus 308 ~A~~~L~~l~~--------~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 308 EASELLAPYGE--------KAAILIAAARFIAERKS 335 (335)
T ss_dssp HHHHHTGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHHHHHhCch--------hHHHHHHHHHHHHhccC
Confidence 99999999984 35789999999999974
No 26
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=1.5e-59 Score=447.60 Aligned_cols=247 Identities=28% Similarity=0.366 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHhhc--CChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHH
Q 018156 56 ELSLISMRLRSMVVA--EVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAE 133 (360)
Q Consensus 56 dl~~v~~~l~~~~~~--~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 133 (360)
..+.|++.|.+.+.. .++.+.+++.|.+..| |||+||.|++++++++|++ .+.+..+|+
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~-----------------~~~~~~~A~ 69 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTE-----------------YELGMKSAI 69 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTSC-----------------GGGGHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------HHHHHHHHH
Confidence 456688888888765 5678999999999888 9999999999999999864 124578999
Q ss_pred HHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcC-C-----ChHHH-----------
Q 018156 134 ITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL-K-----HTEVI----------- 194 (360)
Q Consensus 134 ~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~-~-----~~~~~----------- 194 (360)
++||||+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+.+++. . ..+++
T Consensus 70 avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~ 149 (301)
T 1rtr_A 70 ALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVG 149 (301)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhH
Confidence 999999999999999 9999999999999999999999999999999999999886 1 11111
Q ss_pred -----------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccc
Q 018156 195 -----------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 257 (360)
Q Consensus 195 -----------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~ 257 (360)
+++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.
T Consensus 150 ~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~ 229 (301)
T 1rtr_A 150 MVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAK 229 (301)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 258 LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 258 ~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
+||+.|+|+++||+|||++++ +++++..+++|.++|++.|+.||+++
T Consensus 230 ~GK~~g~Dl~~gK~T~p~l~a---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~~~ 276 (301)
T 1rtr_A 230 LGKKVGSDLENNKSTYVSLLG---------------------------------KDGAEDKLTYHRDAAVDELTQIDEQF 276 (301)
T ss_dssp -------------CCHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHTSCTTS
T ss_pred hCCCcchHHHcCCCcHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999995 46789999999999999999999777
Q ss_pred CccchHHHHHHHHHHHHHHhccC
Q 018156 338 DVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 338 ~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
.++.|..|++++++|++
T Consensus 277 ------~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 277 ------NTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp ------CCHHHHHHHHHHHCC--
T ss_pred ------HHHHHHHHHHHHHHhhc
Confidence 67899999999999974
No 27
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=1.5e-59 Score=461.87 Aligned_cols=302 Identities=16% Similarity=0.116 Sum_probs=242.5
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcC-------ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcc-cch
Q 018156 48 DPFSLVGDELSLISMRLRSMVVAE-------VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVL-GNT 119 (360)
Q Consensus 48 ~~~~~~~~dl~~v~~~l~~~~~~~-------~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~-~~~ 119 (360)
.....+.+-+..+++.|.+.+.+. .+.+.++++|.+ .| |||+||+||+++++++|+..+.. .+.. ...
T Consensus 24 ~~~~~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~-~G--GKr~Rp~l~l~~~~~l~~~~~~~-~~~~~~~~ 99 (390)
T 3dyh_A 24 MPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC-LG--GKYNRGLTVIDVAESLLSLSPNN-NGEEDDGA 99 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-SS--SCCHHHHHHHHHHHHTSCC----------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc-CC--ccchhHHHHHHHHHHhCCccccc-cccccccC
Confidence 334445555555666666554432 125889999999 79 99999999999999997510000 0000 000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHH--HHHHHcC-CC-h---H
Q 018156 120 LILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA--LVALASL-KH-T---E 192 (360)
Q Consensus 120 ~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a--~~~l~~~-~~-~---~ 192 (360)
..+.....+..++|+|||||+||||||||||+|++|||+||+|+.||+++||++||+++..+ ++++++. .+ + +
T Consensus 100 ~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~ 179 (390)
T 3dyh_A 100 RRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQD 179 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHH
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence 11111122223345899999999999999999999999999999999999999999999755 5666642 11 1 1
Q ss_pred HH-------------------------------------------HHHHHhhhhhhhHHH-HHHHHHHHHHhcCCCHHH-
Q 018156 193 VI-------------------------------------------MECYMQKTYNKTAAL-VSNSCKAVAYLSGQREEV- 227 (360)
Q Consensus 193 ~~-------------------------------------------~~~Y~~~~~~KTa~L-~~~~~~~ga~lag~~~~~- 227 (360)
++ +++|++|+++|||+| |++||++|++++|++++.
T Consensus 180 ~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~ 259 (390)
T 3dyh_A 180 LLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVD 259 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 11 257999999999999 999999999999998874
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhh-ChHHHHHHhcCCC--CchhHHHHHH
Q 018156 228 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE-FPQLRAFINSSSD--NPANVDVILE 304 (360)
Q Consensus 228 ~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~-~~~~~~~l~~~~~--~~~~~~~i~~ 304 (360)
.+.+++||.++|+||||+||++|+++|++.+|| .|+||++||+|||+++|++. .++.++.|.+.+. ++++++++++
T Consensus 260 ~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~ 338 (390)
T 3dyh_A 260 MGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRR 338 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 788999999999999999999999999999999 99999999999999999998 5677777776654 5678899999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHH--HHHHHHHHHHHHhccC
Q 018156 305 YLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNA--RTALVHITQKIITRNK 360 (360)
Q Consensus 305 li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~--~~~L~~l~~~~~~R~~ 360 (360)
+++++|++++++.+++++.++|.+.|+.||.++ . ++.|..|++++++|+|
T Consensus 339 l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~------~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 339 LYEEADLQGDYVAYEAAVAEQVKELIEKLRLCS------PGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHHHTTTTCCC
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999987 5 8899999999999987
No 28
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=6.2e-59 Score=454.81 Aligned_cols=272 Identities=17% Similarity=0.129 Sum_probs=233.9
Q ss_pred hhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 018156 73 PELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDA 152 (360)
Q Consensus 73 ~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s 152 (360)
+.+.+++.|.+ .| |||+||+|++++++++|+..+.+ ....+.+.+.+..+|+++||||+||||||||||+|
T Consensus 34 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~~------~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s 104 (362)
T 1yhl_A 34 RYLRIMMDTTC-LG--GKYFRGMTVVNVAEGFLAVTQHD------EATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104 (362)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhc-CC--cccHHHHHHHHHHHHhCCCcCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 46888889988 48 99999999999999998641100 00001123344458899999999999999999999
Q ss_pred CCCCCCCCcccccch--HHHHHHHHHHHHHHHHHHHcCC-----ChHHH-------------------------------
Q 018156 153 DTRRGIGSLSSVMGN--KLAILAGDLLISRALVALASLK-----HTEVI------------------------------- 194 (360)
Q Consensus 153 ~~RRG~pt~~~~~G~--~~Ail~Gd~L~~~a~~~l~~~~-----~~~~~------------------------------- 194 (360)
++|||+||+|.+||+ ++|||+||||+++|++++++.. +.+++
T Consensus 105 ~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~ 184 (362)
T 1yhl_A 105 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEV 184 (362)
T ss_dssp CEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTS
T ss_pred CCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Confidence 999999999999999 5899999999999999887641 11111
Q ss_pred ------------HHHHHhhhhhhhHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCC
Q 018156 195 ------------MECYMQKTYNKTAAL-VSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 260 (360)
Q Consensus 195 ------------~~~Y~~~~~~KTa~L-~~~~~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK 260 (360)
+++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 185 ~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK 264 (362)
T 1yhl_A 185 AQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 264 (362)
T ss_dssp CCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred ccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC
Confidence 357999999999999 9999999999999 88888899999999999999999999999999999999
Q ss_pred CccchhccCcccHHHHHHhhhC-hHHHHHHhcCCC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 261 ASLTDLRNGIITAPILFAMEEF-PQLRAFINSSSD--NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 261 ~~g~Dl~egk~Tlp~l~al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
.|+||++||+|||+++|++.. ++.++.+.+.+. ++++++++++++.++|++++++.++++|.++|++.|+.||.++
T Consensus 265 -~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~ 343 (362)
T 1yhl_A 265 -VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKS 343 (362)
T ss_dssp -CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999985 455555554443 3578899999999999999999999999999999999999998
Q ss_pred CccchHHH--HHHHHHHHHHHhccC
Q 018156 338 DVDATNAR--TALVHITQKIITRNK 360 (360)
Q Consensus 338 ~~~~~~~~--~~L~~l~~~~~~R~~ 360 (360)
++ +.|..|++++++|+|
T Consensus 344 ------~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 344 ------PTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp ------HHHHHHHHHHHHHHHTCCC
T ss_pred ------hhHHHHHHHHHHHHHhccC
Confidence 88 999999999999986
No 29
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=9.3e-59 Score=453.39 Aligned_cols=268 Identities=21% Similarity=0.192 Sum_probs=236.3
Q ss_pred hhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 018156 73 PELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDA 152 (360)
Q Consensus 73 ~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s 152 (360)
+.+.++++|.+ .| |||+||++++++++++|+..+. ..+..+.+..+|+++||||+||||||||||+|
T Consensus 57 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s 123 (367)
T 1uby_A 57 ARLKEVLQYNA-PG--GKCNRGLTVVAAYRELSGPGQK----------DAESLRCALAVGWCIELFQAASLVADDIMDQS 123 (367)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHCCGGGC----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhc-CC--CcchhHHHHHHHHHHhCCCccC----------ChhhHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 36889999988 48 9999999999999999752100 01222357899999999999999999999999
Q ss_pred CCCCCCCCcccccchH-HHHHHHHHHHHHHHHHHHcC-----CChHHH--------------------------------
Q 018156 153 DTRRGIGSLSSVMGNK-LAILAGDLLISRALVALASL-----KHTEVI-------------------------------- 194 (360)
Q Consensus 153 ~~RRG~pt~~~~~G~~-~Ail~Gd~L~~~a~~~l~~~-----~~~~~~-------------------------------- 194 (360)
++|||+||+|++||++ ++|+.||++++.+|+++++. .+.+++
T Consensus 124 ~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 203 (367)
T 1uby_A 124 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203 (367)
T ss_dssp CEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCC
T ss_pred CCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC
Confidence 9999999999999999 99999999999999888764 111111
Q ss_pred HHHHHhhhhhhhHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCccc
Q 018156 195 MECYMQKTYNKTAAL-VSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIIT 272 (360)
Q Consensus 195 ~~~Y~~~~~~KTa~L-~~~~~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~T 272 (360)
+++|++++.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|+++|++.+|| .|+||++||+|
T Consensus 204 ~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T 282 (367)
T 1uby_A 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCS 282 (367)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCch
Confidence 468999999999999 9999999999999 89999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhh-ChHHHHHHhcCCC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHH
Q 018156 273 APILFAMEE-FPQLRAFINSSSD--NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALV 349 (360)
Q Consensus 273 lp~l~al~~-~~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~ 349 (360)
||++++++. .++.++.+.+.+. ++++++++++++.++|+.++++.++++|.++|++.|+.+|+++ .++.|.
T Consensus 283 ~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~ 356 (367)
T 1uby_A 283 WLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEIFL 356 (367)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS------CTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHH
Confidence 999999998 4566666766553 3567899999999999888888999999999999999999887 889999
Q ss_pred HHHHHHHhccC
Q 018156 350 HITQKIITRNK 360 (360)
Q Consensus 350 ~l~~~~~~R~~ 360 (360)
.|++++++|+|
T Consensus 357 ~l~~~i~~R~~ 367 (367)
T 1uby_A 357 GLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHHHHhCcC
Confidence 99999999986
No 30
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=7.8e-59 Score=456.84 Aligned_cols=292 Identities=19% Similarity=0.158 Sum_probs=228.1
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHhhc-C-C----hhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCccc
Q 018156 44 KKHLDPFSLVGDELSLISMRLRSMVVA-E-V----PELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLG 117 (360)
Q Consensus 44 ~~~~~~~~~~~~dl~~v~~~l~~~~~~-~-~----~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~ 117 (360)
..+.+.|+.+.+++.+ .+...... . . +.+.+++.|.. .| |||+||+||+++++++|++..
T Consensus 34 ~~f~~~~~~~~~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~G--GKrlRp~Lvl~~~~~~g~~~~-------- 99 (395)
T 2ihi_A 34 AFFRNMYDKYRDAFLS---HLNEYSLEEEIKEHISKYYKLLFDYNC-LG--GKNNRGILVILIYEYVKNRDI-------- 99 (395)
T ss_dssp -CTTTTHHHHHHHHHH---HHHTSSCCHHHHHHHHHHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHC---C--------
T ss_pred HHHHHHHHHHHHHHHH---HHhhCCCChhhhhhHHHHHHHHHHhhc-cC--cccHHHHHHHHHHHHhCCCCC--------
Confidence 3455556666555554 33321111 0 1 45778999998 68 999999999999999986311
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHH--HHHHHHHHHHHHHHHHHcC-C-C---
Q 018156 118 NTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKL--AILAGDLLISRALVALASL-K-H--- 190 (360)
Q Consensus 118 ~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~--Ail~Gd~L~~~a~~~l~~~-~-~--- 190 (360)
.++..+.+..+|++|||||+||||||||||+|++|||+||+|+.||++. |||+||+|++.+++++++. . .
T Consensus 100 ---~~~~~~~a~~lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~ 176 (395)
T 2ihi_A 100 ---NSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCY 176 (395)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTH
T ss_pred ---ChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhH
Confidence 1222457889999999999999999999999999999999999999998 9999999999999888753 1 1
Q ss_pred hHHH---------------------------------------------------HHHHHhhhhhhhHHH-HHHHHHHHH
Q 018156 191 TEVI---------------------------------------------------MECYMQKTYNKTAAL-VSNSCKAVA 218 (360)
Q Consensus 191 ~~~~---------------------------------------------------~~~Y~~~~~~KTa~L-~~~~~~~ga 218 (360)
.+++ +++|++|+.+|||+| |.+||++|+
T Consensus 177 ~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga 256 (395)
T 2ihi_A 177 VDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGM 256 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHH
Confidence 1111 356999999999999 999999999
Q ss_pred HhcCCCHHH--HHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhh-ChHHHHHHhcCCC-
Q 018156 219 YLSGQREEV--ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE-FPQLRAFINSSSD- 294 (360)
Q Consensus 219 ~lag~~~~~--~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~-~~~~~~~l~~~~~- 294 (360)
+++|++++. .+.+++||.++|+||||+||++|++++++.+|| .|+||++||+|||++++++. .++.++.|.+.+.
T Consensus 257 ~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~ 335 (395)
T 2ihi_A 257 LLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGK 335 (395)
T ss_dssp HHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-
T ss_pred HHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 999998887 889999999999999999999999999999999 99999999999999999998 4666666665443
Q ss_pred -CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHHHhcc
Q 018156 295 -NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 359 (360)
Q Consensus 295 -~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 359 (360)
++++++++++++.++|++++++.+++++.++|++.|+.+|+++ .|+.|..|++++++|.
T Consensus 336 ~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 336 NNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEG------IEYVLKYLLEILFTGV 395 (395)
T ss_dssp CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHH------HHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhccC
Confidence 5678899999999999999999999999999999999999988 9999999999999984
No 31
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.6e-58 Score=454.90 Aligned_cols=264 Identities=19% Similarity=0.182 Sum_probs=213.2
Q ss_pred hHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 018156 74 ELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDAD 153 (360)
Q Consensus 74 ~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s~ 153 (360)
.+..+.+|.+. | |||+||+|++++++++++.... ....+.+..+|++|||||+||||||||||+|+
T Consensus 67 ~~~~~~~Y~~~-G--GKRlRP~l~l~~~~~~~~~~~~-----------~~~~~~~~~~A~aiEliH~asLiHDDImD~s~ 132 (395)
T 3mav_A 67 YYKLLFDYNCL-G--GKNNRGILVILIYEYVKNRDIN-----------SSEWEKAACLAWCIEILQAAFLVADDIMDKGE 132 (395)
T ss_dssp HHHHHHHHHHS-S--SCCHHHHHHHHHHHHHHC-CCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhcCCC-C--chhhhHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 45566778775 8 9999999999999999864211 22246788999999999999999999999999
Q ss_pred CCCCCCCcccccchHHHHHHHHHHHH--HHHHHHHcCCC-----hHHH--------------------------------
Q 018156 154 TRRGIGSLSSVMGNKLAILAGDLLIS--RALVALASLKH-----TEVI-------------------------------- 194 (360)
Q Consensus 154 ~RRG~pt~~~~~G~~~Ail~Gd~L~~--~a~~~l~~~~~-----~~~~-------------------------------- 194 (360)
+|||+||+|++||+++||++||+|+. .++.++..... .+++
T Consensus 133 ~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~ 212 (395)
T 3mav_A 133 MRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREI 212 (395)
T ss_dssp EETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCC
T ss_pred CCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHh
Confidence 99999999999999999999998774 45555543210 1111
Q ss_pred -------------------HHHHHhhhhhhhHHH-HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 018156 195 -------------------MECYMQKTYNKTAAL-VSNSCKAVAYLSGQR--EEVATLAFEYGKNLGLAYQLIDDILDFT 252 (360)
Q Consensus 195 -------------------~~~Y~~~~~~KTa~L-~~~~~~~ga~lag~~--~~~~~~l~~~G~~lG~afQI~DDilD~~ 252 (360)
+++|++|+++|||+| |.+||.+|++++|++ +...+.+++||.++|+||||+||++|++
T Consensus 213 ~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 213 DVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp CSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367999999999999 999999999999875 3467899999999999999999999999
Q ss_pred CCccccCCCccchhccCcccHHHHHHhhhC-hHHHHHHhcCCC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 018156 253 GTSASLGKASLTDLRNGIITAPILFAMEEF-PQLRAFINSSSD--NPANVDVILEYLGKSHGIQRTTELALKHASLAAAA 329 (360)
Q Consensus 253 ~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~ 329 (360)
+|++.+|| +|+||++||+|||+++|++.. ++.+..+.+.+. +++.++.++++++++|+.++++.+++++.++|.+.
T Consensus 293 gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~ 371 (395)
T 3mav_A 293 GDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSA 371 (395)
T ss_dssp ---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999 699999999999999999974 555665555443 45678889999999999999999999999999999
Q ss_pred hccCCCCCCccchHHHHHHHHHHHHHHhc
Q 018156 330 IDSLPETHDVDATNARTALVHITQKIITR 358 (360)
Q Consensus 330 L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 358 (360)
|+.+|... .+..|..+++++.+|
T Consensus 372 l~~l~~~~------l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 372 INELHHEG------IEYVLKYLLEILFTG 394 (395)
T ss_dssp HHTSCCHH------HHHHHHHHHHHC---
T ss_pred HHhCCcHH------HHHHHHHHHHHHhcC
Confidence 99999776 778888888887765
No 32
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.3e-58 Score=440.93 Aligned_cols=252 Identities=25% Similarity=0.328 Sum_probs=215.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHH
Q 018156 51 SLVGDELSLISMRLRSMVVAE--VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQ 128 (360)
Q Consensus 51 ~~~~~dl~~v~~~l~~~~~~~--~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (360)
..+.+++..|++.|.+.+... ++.+.+++.|.+..| |||+||.|++++++++|++. +..
T Consensus 10 ~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~ 70 (309)
T 3pde_A 10 AFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTF-----------------VPE 70 (309)
T ss_dssp HHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCC-----------------CHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCH-----------------HHH
Confidence 457778888999999888765 678999999999988 99999999999999998752 134
Q ss_pred --HHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCCh-----HHH-----
Q 018156 129 --QCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT-----EVI----- 194 (360)
Q Consensus 129 --~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~-----~~~----- 194 (360)
..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||+|+++||+.+++...+ +++
T Consensus 71 ~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~ 150 (309)
T 3pde_A 71 RHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALAT 150 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 78999999999999999999 9999999999999999999999999999999999999875421 111
Q ss_pred -----------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 018156 195 -----------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 251 (360)
Q Consensus 195 -----------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~ 251 (360)
+++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+
T Consensus 151 a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~ 230 (309)
T 3pde_A 151 AAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDV 230 (309)
T ss_dssp HHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999988899999999999999999999999
Q ss_pred cCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 018156 252 TGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAID 331 (360)
Q Consensus 252 ~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 331 (360)
+++++.+||+.|+|+++||+|||++++ ++.+...++++.++|.+.|+
T Consensus 231 ~gd~~~~GK~~g~Dl~egK~T~p~l~a---------------------------------l~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 231 VSSPAEMGKATQKDADEAKNTYPGKLG---------------------------------LIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HCC-----------CTTTSSSHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHhCCCccchhhcCCccHHHHHH---------------------------------HHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999995 46688889999999999999
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 332 SLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 332 ~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
.+|.+-. .+. |..|++++++|++
T Consensus 278 ~~~~~~~-----~~~-L~~l~~~~~~r~~ 300 (309)
T 3pde_A 278 GLPTSTQ-----RDD-LAAFFSYFDTERV 300 (309)
T ss_dssp TSCCCHH-----HHH-HHGGGGGSCTTTT
T ss_pred HhhhccC-----HHH-HHHHHHHHHHhhc
Confidence 9876531 233 9999999999974
No 33
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=1.2e-59 Score=457.72 Aligned_cols=257 Identities=17% Similarity=0.164 Sum_probs=228.8
Q ss_pred hhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 018156 73 PELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDA 152 (360)
Q Consensus 73 ~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s 152 (360)
+.+.++..|.. .| |||+||++++++++++|+...+ ..+.+..+|+++||||+||||||||||+|
T Consensus 58 ~~~~~~~~y~~-~G--GKrlRp~l~l~~~~~~g~~~~~-------------~~~~~~~~A~avEllH~asLIHDDImD~s 121 (368)
T 2her_A 58 EYYLNCIDYNV-KK--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSG 121 (368)
T ss_dssp HHHHHHHHHHT-TS--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-CC--CCccchHHHHHHHHHhCCCCcc-------------cHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 56778888887 68 9999999999999999763211 13578899999999999999999999999
Q ss_pred CCCCCCCCcccccchHHHHHHHHHHH---HHHHHHHHcC-CC---hHHH----------------------------H-H
Q 018156 153 DTRRGIGSLSSVMGNKLAILAGDLLI---SRALVALASL-KH---TEVI----------------------------M-E 196 (360)
Q Consensus 153 ~~RRG~pt~~~~~G~~~Ail~Gd~L~---~~a~~~l~~~-~~---~~~~----------------------------~-~ 196 (360)
++|||+||+|++||+.+|||+||+|+ +.+++++++. .+ .+++ . +
T Consensus 122 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 201 (368)
T 2her_A 122 KFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISE 201 (368)
T ss_dssp CEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHH
T ss_pred CCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHH
Confidence 99999999999999999999999999 8888777653 11 1111 1 7
Q ss_pred HHHhhhhhhhHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccH
Q 018156 197 CYMQKTYNKTAAL-VSNSCKAVAYLSGQREEV--ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITA 273 (360)
Q Consensus 197 ~Y~~~~~~KTa~L-~~~~~~~ga~lag~~~~~--~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tl 273 (360)
+|++|+++|||+| |++||++|++++|++++. .+.+++||.++|+||||+||++|++ .+|| .|+||++||+||
T Consensus 202 ~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~ 276 (368)
T 2her_A 202 RYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTW 276 (368)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccH
Confidence 8999999999999 999999999999998887 8899999999999999999999999 7899 999999999999
Q ss_pred HHHHHhhh-ChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHH
Q 018156 274 PILFAMEE-FPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHIT 352 (360)
Q Consensus 274 p~l~al~~-~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~ 352 (360)
|+++|++. .++.++.+.+.+..++ +++++++.++|+++++++++++|.++|++.|+.+|.++ .|+.|..|+
T Consensus 277 pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l~ 348 (368)
T 2her_A 277 PLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLI 348 (368)
T ss_dssp HHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHH
Confidence 99999997 5677888877776655 89999999999999999999999999999999999988 999999999
Q ss_pred HHHHhc
Q 018156 353 QKIITR 358 (360)
Q Consensus 353 ~~~~~R 358 (360)
++++++
T Consensus 349 ~~i~~~ 354 (368)
T 2her_A 349 HQISEL 354 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 34
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=3.2e-58 Score=439.71 Aligned_cols=249 Identities=26% Similarity=0.362 Sum_probs=210.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcC---ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHH
Q 018156 51 SLVGDELSLISMRLRSMVVAE---VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRR 127 (360)
Q Consensus 51 ~~~~~dl~~v~~~l~~~~~~~---~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (360)
..+.+....|++.|.+.+... ++.+.+++.|.+..| |||+||.|++++++++|++ .+.
T Consensus 11 ~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~-----------------~~~ 71 (313)
T 3lom_A 11 QVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVD-----------------QGV 71 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCS--SCCHHHHHHHHHHHHTTCC-----------------HHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------HHH
Confidence 445666778888888888753 678999999999888 9999999999999999874 346
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCC-C--h-H----HH---
Q 018156 128 QQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK-H--T-E----VI--- 194 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~-~--~-~----~~--- 194 (360)
+..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||+|+++||+.+++.. + + + ++
T Consensus 72 ~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~l 151 (313)
T 3lom_A 72 LDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVL 151 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 889999999999999999999 99999999999999999999999999999999999988652 1 1 1 11
Q ss_pred --------------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHhhhh
Q 018156 195 --------------------------MECYMQKTYNKTAALVSNSCKAVAYLSG--QREEVATLAFEYGKNLGLAYQLID 246 (360)
Q Consensus 195 --------------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag--~~~~~~~~l~~~G~~lG~afQI~D 246 (360)
+++|.+++++|||+||+++|++ ++++| ++++..+.+++||.++|+||||+|
T Consensus 152 a~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~D 230 (313)
T 3lom_A 152 VNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQD 230 (313)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999 99999 899999999999999999999999
Q ss_pred hhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 018156 247 DILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLA 326 (360)
Q Consensus 247 DilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A 326 (360)
|++|++++++.+||+.|+|+++||+|||+++ ++++++..++++.++|
T Consensus 231 DilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~---------------------------------~l~~a~~~a~~~~~~A 277 (313)
T 3lom_A 231 DYLDLYAPTQILGKGRSSDQANQKTTFATLF---------------------------------NKQQLEEEIAVHYQIA 277 (313)
T ss_dssp HHHHHHCC---------------CCCHHHHS---------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHhhCCCCcchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 4688999999999999
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 327 AAAIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 327 ~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
++.|+.||++. +.|..|++++++|++
T Consensus 278 ~~~L~~l~~~~--------~~L~~la~~~~~R~~ 303 (313)
T 3lom_A 278 MDSLRLFGSKA--------AALIELTKQLQNRSN 303 (313)
T ss_dssp HHTTTTTGGGG--------HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccH--------HHHHHHHHHHHhccc
Confidence 99999998654 789999999999963
No 35
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=2.3e-58 Score=437.96 Aligned_cols=246 Identities=26% Similarity=0.331 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHH
Q 018156 51 SLVGDELSLISMRLRSMVVAE-VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQ 129 (360)
Q Consensus 51 ~~~~~dl~~v~~~l~~~~~~~-~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (360)
..+......|++.|.+.+... ++.+.+++.|. ..| |||+||.|++++++++|++ .+.+.
T Consensus 5 ~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~g--GKrlRp~L~l~~~~~~g~~-----------------~~~~~ 64 (297)
T 3m0g_A 5 ERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQG--GKRLRAFLAIESAAIHGIS-----------------MAQAM 64 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSC--SCCHHHHHHHHHHHHTTCC-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCC--CCcHHHHHHHHHHHHhCCC-----------------HHHHH
Confidence 356677788888999888765 56899999999 878 9999999999999999864 34688
Q ss_pred HHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC--h----HHH-------
Q 018156 130 CIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH--T----EVI------- 194 (360)
Q Consensus 130 ~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~--~----~~~------- 194 (360)
.+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||+|+++||+.+++... + +++
T Consensus 65 ~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~ 144 (297)
T 3m0g_A 65 PAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQAS 144 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999887541 1 111
Q ss_pred -----------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 018156 195 -----------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDF 251 (360)
Q Consensus 195 -----------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~ 251 (360)
+++|++++.+|||+||++||++|++++|++++ .+++||.++|+||||+||++|+
T Consensus 145 g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~ 221 (297)
T 3m0g_A 145 GAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDV 221 (297)
T ss_dssp STTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC--
T ss_pred hHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999998877 7999999999999999999999
Q ss_pred cCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 018156 252 TGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAID 331 (360)
Q Consensus 252 ~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 331 (360)
+++++.+||+.|+|+++||+|||++++ +++++..++++.++|++.|+
T Consensus 222 ~~~~~~~GK~~g~Dl~~gK~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 222 EGNEEAAGKRLGKDAEAHKATFVSLLG---------------------------------LAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp -------------------CCHHHHHC---------------------------------SSHHHHHHHHHHHHHHHHTG
T ss_pred cCCHHHhCCCccchhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999994 46788999999999999999
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 332 SLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 332 ~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
.||.+. +.|..|++++++|++
T Consensus 269 ~~~~~~--------~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 269 PYGEAA--------STLRACARYVIERDK 289 (297)
T ss_dssp GGGGGG--------HHHHHHHHHHTC---
T ss_pred hCCCCH--------HHHHHHHHHHHHhcc
Confidence 998765 789999999999974
No 36
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=1.6e-57 Score=431.86 Aligned_cols=246 Identities=29% Similarity=0.435 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHhhcC-ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHH
Q 018156 57 LSLISMRLRSMVVAE-VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEIT 135 (360)
Q Consensus 57 l~~v~~~l~~~~~~~-~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~v 135 (360)
...|++.|.+.+... .|.+.+++.|.+..| |||+||.|++++++++|++. +.+..+|+++
T Consensus 11 ~~~i~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~av 71 (295)
T 3ipi_A 11 YRYVEAGIKESITLIEDPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSY-----------------SRSLNAALAV 71 (295)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHSCC-----------------GGGHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHH
Confidence 467888888877653 378999999999988 99999999999999998751 2467899999
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH---------------------
Q 018156 136 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI--------------------- 194 (360)
Q Consensus 136 EllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~--------------------- 194 (360)
||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||++++... .+++
T Consensus 72 EliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~ 150 (295)
T 3ipi_A 72 EMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-EKVIQDFGKAGMDMAEGEVLDLKLE 150 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHHHHccchHHHHcc
Confidence 999999999999999999999999999999999999999999999999988753 2222
Q ss_pred -----HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccC
Q 018156 195 -----MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNG 269 (360)
Q Consensus 195 -----~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~eg 269 (360)
+++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++++. || |+.+|
T Consensus 151 ~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~g 224 (295)
T 3ipi_A 151 DESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFT 224 (295)
T ss_dssp -----CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C----------
T ss_pred CCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccC
Confidence 47899999999999999999999999999999999999999999999999999999999763 54 67899
Q ss_pred cccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHH
Q 018156 270 IITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALV 349 (360)
Q Consensus 270 k~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~ 349 (360)
|+|||++++++..+ .+++++|++.+++|.++|++.|+.||+++ .++.|.
T Consensus 225 k~Tlp~l~al~~~~-------------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~ 273 (295)
T 3ipi_A 225 SETLPHIYMKSTSK-------------------------EEALKKSIDCVKLHVAAAKETLETFRECP------ARDKLF 273 (295)
T ss_dssp -CCHHHHHTTTSCH-------------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHHH
T ss_pred cccHHHHHHHhcCc-------------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHH
Confidence 99999999986532 24689999999999999999999999988 999999
Q ss_pred HHHHHHHhcc
Q 018156 350 HITQKIITRN 359 (360)
Q Consensus 350 ~l~~~~~~R~ 359 (360)
.|+++++.|.
T Consensus 274 ~l~~~~~~~~ 283 (295)
T 3ipi_A 274 QITDYITVDM 283 (295)
T ss_dssp HHHHHTTGGG
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 37
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=6.1e-57 Score=425.69 Aligned_cols=238 Identities=26% Similarity=0.318 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHhhc-CChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHH
Q 018156 57 LSLISMRLRSMVVA-EVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEIT 135 (360)
Q Consensus 57 l~~v~~~l~~~~~~-~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~v 135 (360)
.++|+..|.+.+.. .++.+.+++.|.+..| |||+||.|++++++++|++ .+.+..+|+++
T Consensus 15 ~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~-----------------~~~~~~~A~av 75 (284)
T 2ftz_A 15 XEXVEERIREILRPGWDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVE-----------------EEXLLDVAVAV 75 (284)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCC-----------------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCcC-----------------HHHHHHHHHHH
Confidence 45666777776643 3568999999999988 9999999999999999864 24578899999
Q ss_pred HHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH-------------------
Q 018156 136 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI------------------- 194 (360)
Q Consensus 136 EllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~------------------- 194 (360)
||||+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+.+++..+.+++
T Consensus 76 EliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~ 155 (284)
T 2ftz_A 76 ELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVE 155 (284)
T ss_dssp HHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999987553332
Q ss_pred ---------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccch
Q 018156 195 ---------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTD 265 (360)
Q Consensus 195 ---------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~D 265 (360)
+++|++++++|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+||+.|+|
T Consensus 156 ~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~D 232 (284)
T 2ftz_A 156 FERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKD 232 (284)
T ss_dssp HHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------
T ss_pred hccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchh
Confidence 46799999999999999999999999998877 899999999999999999999999999999999999
Q ss_pred hccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHH
Q 018156 266 LRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNAR 345 (360)
Q Consensus 266 l~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~ 345 (360)
++ |+|||++++ +++++..+++|.++|++.|+.||+ + .+
T Consensus 233 l~--K~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~-~------~~ 270 (284)
T 2ftz_A 233 TE--XVTLVXXVG---------------------------------IQXAREMADXYYEEVLXGIESEGL-F------RT 270 (284)
T ss_dssp ------CHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHHTTC-H------HH
T ss_pred cc--ccchHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCc-h------hH
Confidence 99 999999995 467899999999999999999987 6 78
Q ss_pred HH-HHHHHHHHHhc
Q 018156 346 TA-LVHITQKIITR 358 (360)
Q Consensus 346 ~~-L~~l~~~~~~R 358 (360)
+. |..|++++++|
T Consensus 271 ~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 271 LFLLXELXQMVEER 284 (284)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC
Confidence 88 99999999987
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1.8e-55 Score=420.36 Aligned_cols=247 Identities=25% Similarity=0.286 Sum_probs=202.5
Q ss_pred HHHHHHHHhh---cCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHH
Q 018156 60 ISMRLRSMVV---AEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITE 136 (360)
Q Consensus 60 v~~~l~~~~~---~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vE 136 (360)
|++.|.+.+. ..+|.+.+++.|.+..| |||+||.|++++++++|++. ..++..+.+..+|+++|
T Consensus 18 ve~~l~~~~~~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~-----------~~~~~~~~~~~~A~aiE 84 (311)
T 3llw_A 18 FESFLKNHHLHLESFHPYLEKAFFEMVLNG--GKRFRPKLFLAVLCALVGQK-----------DYSNQQTEYFKIALSIE 84 (311)
T ss_dssp HHHHHHTCCCCCCSSCSSHHHHHHHHHHSC--CCCHHHHHHHHHHHHHSCHH-----------HHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhCCCc-----------ccccchHHHHHHHHHHH
Confidence 7778888774 35678999999999889 99999999999999998641 01122357889999999
Q ss_pred HHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHc--CCChH---HH---------------
Q 018156 137 MIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALAS--LKHTE---VI--------------- 194 (360)
Q Consensus 137 llH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~--~~~~~---~~--------------- 194 (360)
|||+|||||||| ||+|++|||+||+|++||+..|||+||+|++.||+.+++ +.+.. ++
T Consensus 85 liH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~G 164 (311)
T 3llw_A 85 CLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILG 164 (311)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999999999999999987 32211 11
Q ss_pred -------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHhhhhhhhcccCCccccCC
Q 018156 195 -------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVA-TLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 260 (360)
Q Consensus 195 -------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~-~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK 260 (360)
+++|.+|+.+|||+||+++|++|++++|++++.. +.+++||.++|+||||+||++|+++|++.+||
T Consensus 165 Q~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK 244 (311)
T 3llw_A 165 QALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGK 244 (311)
T ss_dssp HHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCc
Confidence 5789999999999999999999999999998888 89999999999999999999999999999999
Q ss_pred CccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 018156 261 ASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVD 340 (360)
Q Consensus 261 ~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~ 340 (360)
+.|+ ++||+|||++++ ++.+...++++.++|.+.|+.++.-..
T Consensus 245 ~~g~--~~gK~T~p~l~~---------------------------------l~~a~~~~~~~~~~a~~~l~~~~~~~~-- 287 (311)
T 3llw_A 245 TTHL--DSAKNSFVNLLG---------------------------------LERANNYAQTLKTEVLNDLDALKPAYP-- 287 (311)
T ss_dssp --------CCSCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHTTSTTTCH--
T ss_pred cccc--ccCcchHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHhhhccccCc--
Confidence 9877 999999999994 567889999999999999999664220
Q ss_pred chHH-HHHHHHHHHHHHhcc
Q 018156 341 ATNA-RTALVHITQKIITRN 359 (360)
Q Consensus 341 ~~~~-~~~L~~l~~~~~~R~ 359 (360)
. .+.|..|++++++|.
T Consensus 288 ---~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 288 ---LLQENLNALLNTLFKGE 304 (311)
T ss_dssp ---HHHHHHHHHHHHHHC--
T ss_pred ---cHHHHHHHHHHHHHhcc
Confidence 2 478999999999995
No 39
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=5.3e-56 Score=434.26 Aligned_cols=257 Identities=17% Similarity=0.154 Sum_probs=213.0
Q ss_pred hHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 018156 74 ELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDAD 153 (360)
Q Consensus 74 ~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllH~asLihDDI~D~s~ 153 (360)
.+.++++|.+. | |||+||++++++++++++..... .+.+..+||||||||+||||||||||+|+
T Consensus 59 ~~~~~l~Y~~~-G--GKrlRp~l~~~~~~~~~~~~~~~-------------~e~~~~la~aiEliH~asLiHDDimD~s~ 122 (368)
T 2q58_A 59 YYLNCIDYNVK-K--GKHIRGKILVLISSLSSAYSNIK-------------RDSIYLLGWVVEAIQALILIADDIMDSGK 122 (368)
T ss_dssp HHHHHHHHHTT-C--STTTTTC-CHHHHTTTTCCCSSS-------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC-C--ccchhHHHHHHHHHHhCCCccCC-------------HHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 37789999985 8 99999999999999998642211 35678899999999999999999999999
Q ss_pred CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCCh-------HHH-----------------------------HHH
Q 018156 154 TRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT-------EVI-----------------------------MEC 197 (360)
Q Consensus 154 ~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~-------~~~-----------------------------~~~ 197 (360)
+|||+||+|++||+++|||+||+|++.|++++.+..+. +++ .++
T Consensus 123 ~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~ 202 (368)
T 2q58_A 123 FRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISER 202 (368)
T ss_dssp EETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHH
T ss_pred CCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHH
Confidence 99999999999999999999999999999988764321 111 578
Q ss_pred HHhhhhhhhHHH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHH
Q 018156 198 YMQKTYNKTAAL-VSNSCKAVAYLSG--QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 274 (360)
Q Consensus 198 Y~~~~~~KTa~L-~~~~~~~ga~lag--~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp 274 (360)
|++++.+|||+| |++||.+|++++| ++++..+.+++||.++|+||||+||++|+++ ||+.|+||++||+|||
T Consensus 203 y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p 277 (368)
T 2q58_A 203 YFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWP 277 (368)
T ss_dssp HHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHH
Confidence 999999999999 7999999999998 4666678899999999999999999999985 8999999999999999
Q ss_pred HHHHhhhC-hHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHH----HH
Q 018156 275 ILFAMEEF-PQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTA----LV 349 (360)
Q Consensus 275 ~l~al~~~-~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~----L~ 349 (360)
+++|++.. ++.+..+.+.+... ...+.+++...+..+.+.+.++++.+++.+.|+.+|... .++. |.
T Consensus 278 ~i~al~~~~~~~r~~L~~~~~~~--~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~------~k~~l~~ll~ 349 (368)
T 2q58_A 278 LQKSFEIADEEMKLKISENYGKN--SSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLIH 349 (368)
T ss_dssp HHSSTTTCCHHHHHHHHHHTTTC--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhCCC--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHHH
Confidence 99999985 56777777666533 234555666666777788888999999999999999876 5544 45
Q ss_pred HHHHHHHhcc
Q 018156 350 HITQKIITRN 359 (360)
Q Consensus 350 ~l~~~~~~R~ 359 (360)
++++++++|+
T Consensus 350 kI~~~~~~rk 359 (368)
T 2q58_A 350 QISELITNSR 359 (368)
T ss_dssp HHHHHHCC--
T ss_pred HHHHHHHHhh
Confidence 5666666664
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.9e-54 Score=409.65 Aligned_cols=240 Identities=25% Similarity=0.321 Sum_probs=195.1
Q ss_pred HHHHHHHHHHhh---cCChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHH
Q 018156 58 SLISMRLRSMVV---AEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEI 134 (360)
Q Consensus 58 ~~v~~~l~~~~~---~~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~ 134 (360)
+.+++.|.+.+. +.+|.+.+++.|.+..| |||+||.|++++++++|++. .+.+..+|++
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~~~~~----------------~~~~~~~A~a 68 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAG--GKHFRAQLLLSVVQSNKPEL----------------LNQALDVALA 68 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCGGG----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCc----------------HHHHHHHHHH
Confidence 456667776653 35678999999999889 99999999999999997530 2468899999
Q ss_pred HHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC-hH----HH-------------
Q 018156 135 TEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH-TE----VI------------- 194 (360)
Q Consensus 135 vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~-~~----~~------------- 194 (360)
+||||+|||||||| ||+|++|||+||+|++||+++|||+||+|+++||+.+++... .+ ++
T Consensus 69 iEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~ 148 (291)
T 3npk_A 69 LEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMV 148 (291)
T ss_dssp HHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999 999999999999999999999999999999999999987531 11 11
Q ss_pred ---------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccC
Q 018156 195 ---------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLG 259 (360)
Q Consensus 195 ---------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~G 259 (360)
+++|.+|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|
T Consensus 149 ~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~G 228 (291)
T 3npk_A 149 IGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSG 228 (291)
T ss_dssp HHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHC
Confidence 57899999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 018156 260 KASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDV 339 (360)
Q Consensus 260 K~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~ 339 (360)
|+.+.| +||+|||+++++ +.+...++++.++|.+.|+.|+..
T Consensus 229 K~~~~d--~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~a~~~l~~~~~~--- 270 (291)
T 3npk_A 229 KPTNND--IHKNSFVNLLGL---------------------------------EQAIKTKENLLNECEQDLEKLNEK--- 270 (291)
T ss_dssp -----------CCHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHHTSCHH---
T ss_pred Cccchh--cCcchHHHHHHH---------------------------------HHhHHHHHHHHHHHHHHHHHhchh---
Confidence 999877 999999999954 567788889999999999998642
Q ss_pred cchHHHHHHHHHHHHHHh
Q 018156 340 DATNARTALVHITQKIIT 357 (360)
Q Consensus 340 ~~~~~~~~L~~l~~~~~~ 357 (360)
..+.|.+|+++.++
T Consensus 271 ----~~~~l~~la~~~~~ 284 (291)
T 3npk_A 271 ----LAQMIQNLIIQYLE 284 (291)
T ss_dssp ----HHHHHHHHHHHHC-
T ss_pred ----HHHHHHHHHHHHHh
Confidence 35789999988654
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=1.9e-54 Score=409.89 Aligned_cols=243 Identities=21% Similarity=0.262 Sum_probs=210.5
Q ss_pred hHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHH
Q 018156 52 LVGDELSLISMRLRSMVVA-EVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQC 130 (360)
Q Consensus 52 ~~~~dl~~v~~~l~~~~~~-~~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (360)
.+..-.+.|++.|.+.+.. ..+.+.+++.|++. | |||+||.|++++++++|++ .+.+..
T Consensus 14 ~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-g--GKrlRp~L~l~~~~~~g~~-----------------~~~~~~ 73 (289)
T 2azj_A 14 FWLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-D--GKRFRGTLNMFFTVALGGD-----------------IKDSYG 73 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-C--CCCHHHHHHHHHHHHTTCC-----------------GGGGHH
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHhCCC-----------------HHHHHH
Confidence 3444455677788888765 46779999999998 9 9999999999999999864 124678
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHH-HcCCChHHH---------------
Q 018156 131 IAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVAL-ASLKHTEVI--------------- 194 (360)
Q Consensus 131 lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l-~~~~~~~~~--------------- 194 (360)
+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||+|+++||+.+ ++.++ +++
T Consensus 74 ~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~-~~~~~~~~~~~~~~~GQ~ 152 (289)
T 2azj_A 74 GALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGD-DALNTSIELWKDTSVGAL 152 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 77542 322
Q ss_pred -----HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccC
Q 018156 195 -----MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNG 269 (360)
Q Consensus 195 -----~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~eg 269 (360)
+++|++++++|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++++ ||+ |+++|
T Consensus 153 ~dl~~~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~g 224 (289)
T 2azj_A 153 RDMYDNSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGS 224 (289)
T ss_dssp HTTTTTSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTT
T ss_pred HHHhhHHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcC
Confidence 357999999999999999999999999 88888999999999999999999999999996 564 89999
Q ss_pred cccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHhccCCC-CCCccchHHHHH
Q 018156 270 IITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRT-TELALKHASLAAAAIDSLPE-THDVDATNARTA 347 (360)
Q Consensus 270 k~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a-~~~a~~~~~~A~~~L~~lp~-~~~~~~~~~~~~ 347 (360)
|+|||+++ +... .+.+ +..+++|.++|++.|+.+|. ++ .++.
T Consensus 225 k~Tlp~l~--~~~g----------------------------~~~a~~~~a~~~~~~A~~~L~~lp~~~~------~~~~ 268 (289)
T 2azj_A 225 AKQLFKYY--REGK----------------------------LEEYVRSVYLEYKQKYDELISNIPFQSK------YLSE 268 (289)
T ss_dssp GGGGHHHH--TTTC----------------------------HHHHHHHHHHHHHHHHHHHHHTSCCCGG------GHHH
T ss_pred cccHHHHH--HcCC----------------------------HHHHHHHHHHHHHHHHHHHHHhCCCCcH------HHHH
Confidence 99999999 2211 0112 45899999999999999998 66 8899
Q ss_pred HHHHHHHHHhcc
Q 018156 348 LVHITQKIITRN 359 (360)
Q Consensus 348 L~~l~~~~~~R~ 359 (360)
|..|++++++|.
T Consensus 269 L~~l~~~~~~R~ 280 (289)
T 2azj_A 269 IRSLPEFLANGL 280 (289)
T ss_dssp HHTHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999999985
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=2.6e-53 Score=403.33 Aligned_cols=241 Identities=30% Similarity=0.405 Sum_probs=212.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhH
Q 018156 47 LDPFSLVGDELSLISMRLRSMVVAEV-PELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLR 125 (360)
Q Consensus 47 ~~~~~~~~~dl~~v~~~l~~~~~~~~-~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (360)
.++-..+.++++.|++.|++.+.... +.+.+++.|.+..| |||+||.|++++++++|++ .
T Consensus 11 ~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~-----------------~ 71 (293)
T 2j1p_A 11 TDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGE-----------------E 71 (293)
T ss_dssp --CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTCC-----------------H
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------H
Confidence 34456788889999999999987654 56999999999888 9999999999999999763 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC----h-HH-----
Q 018156 126 RRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH----T-EV----- 193 (360)
Q Consensus 126 ~~~~~lA~~vEllH~asLihDDI--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~----~-~~----- 193 (360)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||+|+++||+.+++..+ + .+
T Consensus 72 ~~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ 151 (293)
T 2j1p_A 72 SLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVG 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHH
Confidence 45788999999999999999998 999999999999999999999999999999999998876421 1 00
Q ss_pred -----------H------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhh
Q 018156 194 -----------I------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQL 244 (360)
Q Consensus 194 -----------~------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI 244 (360)
+ +++|..++++|||+||++||++|++++|++++..+.+++||.++|+||||
T Consensus 152 ~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI 231 (293)
T 2j1p_A 152 ELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQV 231 (293)
T ss_dssp HHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 45799999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHH
Q 018156 245 IDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHAS 324 (360)
Q Consensus 245 ~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~ 324 (360)
+||++|+++++ |.|+|+++ +++++++.+++|.+
T Consensus 232 ~DDiLD~~~~~--------------K~T~p~l~---------------------------------gle~a~~~a~~~~~ 264 (293)
T 2j1p_A 232 VDDILDVTKSS--------------KLTYPKLM---------------------------------GLEKSREFAEKLNT 264 (293)
T ss_dssp HHHHHHHHC----------------CCCHHHHH---------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHccCCc--------------cccHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 99999999875 89999998 56889999999999
Q ss_pred HHHHHhccCCCCCCccchHHHHHHHHHHHHHHhccC
Q 018156 325 LAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 360 (360)
Q Consensus 325 ~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 360 (360)
+|++.|+.+| ++ .++.|..|++++++|++
T Consensus 265 ~A~~~L~~l~-~~------~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 265 EARDQLLGFD-SD------KVAPLLALANYIANRQN 293 (293)
T ss_dssp HHHHHTTTSC-TT------TTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCC-cH------HHHHHHHHHHHHHhhcC
Confidence 9999999997 44 56899999999999975
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=2.4e-50 Score=379.23 Aligned_cols=207 Identities=26% Similarity=0.315 Sum_probs=175.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhh
Q 018156 44 KKHLDPFSLVGDELSLISMRLRSMVVAE-VPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLIL 122 (360)
Q Consensus 44 ~~~~~~~~~~~~dl~~v~~~l~~~~~~~-~~~l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~ 122 (360)
|.|......+.++++.|++.|++.+.+. +|.+.+++.|++..| |||+||.|++++++++|+..
T Consensus 1 ~~~~~l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~Lvll~~~~~g~~~-------------- 64 (285)
T 4fp4_A 1 MVMYSLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSIDRRS-------------- 64 (285)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHCGGG--------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCC--------------
Confidence 4466777899999999999999999987 889999999999988 99999999999999998620
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCChHHH--------
Q 018156 123 DLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI-------- 194 (360)
Q Consensus 123 ~~~~~~~~lA~~vEllH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~-------- 194 (360)
...+.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||+|+++|++.+++.++ +++
T Consensus 65 ~~~~~~~~~A~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~ 143 (285)
T 4fp4_A 65 IMDPRILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQ 143 (285)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 00246889999999999999999999999999999999999999999999999999999999998754 433
Q ss_pred ---HHHHHh-------hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccc
Q 018156 195 ---MECYMQ-------KTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLT 264 (360)
Q Consensus 195 ---~~~Y~~-------~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~ 264 (360)
..++++ ++++|||+||++||++|++++|++ +..+.+++||.++|+||||+||++|++++++ .||+.|+
T Consensus 144 ~~~~GQ~lDl~~~~~~~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~ 221 (285)
T 4fp4_A 144 RLSVGQALDLEGERDKAAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIAN 221 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHH
T ss_pred HHHHhHHHHHhccccchhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHH
Confidence 122222 789999999999999999999999 8888999999999999999999999999876 5788999
Q ss_pred hhccC
Q 018156 265 DLRNG 269 (360)
Q Consensus 265 Dl~eg 269 (360)
||+++
T Consensus 222 DI~e~ 226 (285)
T 4fp4_A 222 EIGRY 226 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99997
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=1.2e-44 Score=340.53 Aligned_cols=173 Identities=15% Similarity=0.177 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHhhcCChh-HHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHH
Q 018156 57 LSLISMRLRSMVVAEVPE-LASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEIT 135 (360)
Q Consensus 57 l~~v~~~l~~~~~~~~~~-l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~v 135 (360)
-..|++.|.+.+....|. +.+++.|++..| |||+||.|++++++++|++ .+.+..+|+++
T Consensus 9 ~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~-----------------~~~~~~~A~ai 69 (274)
T 3kra_B 9 EADIERYLKKSITIRPPETVFGPMHHLTFAA--PATAASTLCLAACELVGGD-----------------RSQAMAAAAAI 69 (274)
T ss_dssp HHHHHHHHHHHCCCCSSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCC-----------------GGGGHHHHHHH
T ss_pred HHHHHHHHHHHcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHH
Confidence 345677888888877775 999999999889 9999999999999999874 13567899999
Q ss_pred HHHHHHHHhhhccC-CCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCCh-------HHH-------------
Q 018156 136 EMIHVASLIHDDVL-DDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT-------EVI------------- 194 (360)
Q Consensus 136 EllH~asLihDDI~-D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~-------~~~------------- 194 (360)
||||+||||||||+ |++++|||+||+|.+||+++|||+||+|+++||+.+++..++ .++
T Consensus 70 EliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~ 149 (274)
T 3kra_B 70 HLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPE 149 (274)
T ss_dssp HHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHH
Confidence 99999999999998 666789999999999999999999999999999999876542 111
Q ss_pred ------------------HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q 018156 195 ------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 248 (360)
Q Consensus 195 ------------------~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDi 248 (360)
+++|.+++++|||+||++||++|++++|++++..+.+++||.++|+||||+||.
T Consensus 150 ~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 150 GMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp THHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=6.8e-44 Score=335.30 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=152.1
Q ss_pred HHHHHHHHHHhhcCChh-HHHHHHHHhhCCCCCcccHHHHHHHHHHHhcCCCCCCCCCcccchhhhhhHHHHHHHHHHHH
Q 018156 58 SLISMRLRSMVVAEVPE-LASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITE 136 (360)
Q Consensus 58 ~~v~~~l~~~~~~~~~~-l~~~~~~~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vE 136 (360)
..|++.|++.+....|. +.+++.|++..| |||+||.|++++++++|++ .+.+..+|+++|
T Consensus 15 ~~i~~~L~~~~~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~-----------------~~~~~~~A~aiE 75 (273)
T 3qkc_B 15 SDIESYLKKAIPIRAPESVFEPMHHLTFAA--PRTSASALCVAACELVGGD-----------------RSDAMAAAAAVH 75 (273)
T ss_dssp HHHHHHHHHHSCCCCSSTTHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCC-----------------GGGTHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHH
Confidence 44667888888776664 999999999889 9999999999999999874 135788999999
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCCh------HHH----------------
Q 018156 137 MIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT------EVI---------------- 194 (360)
Q Consensus 137 llH~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~------~~~---------------- 194 (360)
|||+||||||||+|+|. |||+||+|++||+++|||+||+|+++||+.+++..++ .++
T Consensus 76 liH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~ 154 (273)
T 3qkc_B 76 LMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIV 154 (273)
T ss_dssp HHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHH
Confidence 99999999999999998 9999999999999999999999999999999875431 111
Q ss_pred -------------HHHHHhh-hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018156 195 -------------MECYMQK-TYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDIL 249 (360)
Q Consensus 195 -------------~~~Y~~~-~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDil 249 (360)
.++|+++ +++|||+||++||++|++++|++++..+.+++||.++|+||||+||++
T Consensus 155 ~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 155 EGQYHELGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp HHHHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1467764 599999999999999999999999999999999999999999999996
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=93.92 E-value=1.5 Score=40.53 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=56.4
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchh
Q 018156 219 YLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPAN 298 (360)
Q Consensus 219 ~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~ 298 (360)
+++..+++ ...++.++|+|||+.|=+.|+ +.|+..|++-+|.-..-+.+-...++.. ...++ .
T Consensus 146 i~g~~~~~----~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YlP~~~l~~~gv~~~dl~~-~~~~~-~ 208 (294)
T 4hd1_A 146 IFGCLDDE----RARLSDATCTALQVANHMQDI-----------DRDLALGRIYVPRADLEQFGATLDDIRA-RRATD-G 208 (294)
T ss_dssp HTTCCSHH----HHHHHHHHHHHHHHHHHHHTH-----------HHHHHTTCBCSCHHHHHTTTCCHHHHHT-TCCCH-H
T ss_pred HhCCCCHH----HHHHHHHHHHHHHHHHHHHhc-----------hhhhccCceeCCHHHHHHcCCCHHHHhc-CCCCH-H
Confidence 34444544 345678999999999988776 5788899999987654433211122222 21222 2
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 018156 299 VDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPET 336 (360)
Q Consensus 299 ~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~ 336 (360)
+.. .+..-...++.++++|...+..+|..
T Consensus 209 ~~~---------~~~~~~~~A~~~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 209 VRR---------CIALEVDRAQALFDEGRRLESLVPPR 237 (294)
T ss_dssp HHH---------HHHHHHHHHHHHHHHHGGGGGSSCHH
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 222 12344566778888888888888753
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=88.26 E-value=1.5 Score=41.60 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=66.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHH
Q 018156 195 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 274 (360)
Q Consensus 195 ~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp 274 (360)
++++..-+++-.|....+.+.+-..-...++. .......+.++|.|||+.|=+.|+ +.|+..|++=||
T Consensus 138 ~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YlP 205 (343)
T 3vj8_A 138 EQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKTNIIRDY-----------LEDQQGGREFWP 205 (343)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHHHHHHTH-----------HHHHHTTCCCSC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHHHHHHHh-----------HHHHhCCCeeCC
Confidence 33433333344444444444443332222232 234567889999999999977776 678888999888
Q ss_pred HHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 018156 275 ILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPET 336 (360)
Q Consensus 275 ~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~ 336 (360)
.=..-+..-...+++ .+..-..+.. .+..-...++.+.++|...+..+|+.
T Consensus 206 ~e~l~~~g~~~~dl~-----~~~~~~~~~~------~l~~l~~~A~~~~~~a~~~~~~L~~~ 256 (343)
T 3vj8_A 206 QEVWSRYVKKLGDFA-----KPENIDLAVQ------CLNELITNALHHIPDVITYLSRLRNQ 256 (343)
T ss_dssp HHHHTTTCSSGGGGG-----SGGGHHHHHH------HHHHHHHHHHTTHHHHHHHHHTCCCH
T ss_pred HHHHHHcCCCHHHHh-----cccCCHHHHH------HHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 754322210000111 1111122222 24556677888888888888888764
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=86.93 E-value=7.8 Score=35.56 Aligned_cols=85 Identities=15% Similarity=0.051 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHHhhhChHHHHHHhcCCCCchhHHHHHHHHHhcc
Q 018156 231 AFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSH 310 (360)
Q Consensus 231 l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g 310 (360)
....+.++|.|+|+.|=+.|+ +.|+..|++-||.=..-+..-...++.... .++ .+..
T Consensus 159 ~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~-~~~-~~~~--------- 216 (293)
T 3acx_A 159 TYDVARRLGESLQLINILRDV-----------GEDFENERIYFSKQRLKQYEVDIAEVYQNG-VNN-HYID--------- 216 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHCH-----------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHC-CCH-HHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCcEEeCHHHHHHcCCCHHHhcccC-CCH-HHHH---------
Confidence 457889999999999977775 578889999999855433321112222211 222 2222
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018156 311 GIQRTTELALKHASLAAAAIDSLPETH 337 (360)
Q Consensus 311 ~i~~a~~~a~~~~~~A~~~L~~lp~~~ 337 (360)
.+..-...++.++.+|...+..+|...
T Consensus 217 ~~~~l~~~A~~~~~~a~~~~~~lp~~~ 243 (293)
T 3acx_A 217 LWEYYAAIAEKDFRDVMDQIKVFSIEA 243 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHhHHhCCHHH
Confidence 234556778888899999998888753
No 49
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=57.19 E-value=68 Score=29.90 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHH
Q 018156 222 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 278 (360)
Q Consensus 222 g~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~a 278 (360)
|.+.+....+...-+.+=.++-|-||+.|= +|+|.|++|+-..|.
T Consensus 63 g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 63 GAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFN 107 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcC
Confidence 333333344555667888899999999773 577889999877764
No 50
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=56.74 E-value=1.2e+02 Score=27.74 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHH
Q 018156 222 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 278 (360)
Q Consensus 222 g~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~a 278 (360)
+.+++....+...-+.+=.+.-|-||+.|= +|+|.|++|+-..|-
T Consensus 41 ~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G 85 (301)
T 2q80_A 41 KVPEDKLQIIIEVTEMLHNASLLIDDIEDN------------SKLRRGFPVAHSIYG 85 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccCC------------CCCCCCCcchhhccC
Confidence 445444445566667778888999999772 567888888766653
No 51
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=53.76 E-value=57 Score=30.73 Aligned_cols=49 Identities=20% Similarity=0.037 Sum_probs=32.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 217 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 217 ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
++.+.|.+.+....+...-+.+=.++-|-||+.|= +|+|.|++|+-..|
T Consensus 65 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 65 SAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhc
Confidence 33444444443444555567777889999999873 56788888876665
No 52
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=52.98 E-value=87 Score=28.57 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 228 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 228 ~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
...+...-+.+=.+.-|-||+.|= +|+|.|++|+-..|
T Consensus 70 ~~~~A~aiEliH~aSLIHDDImD~------------s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 70 ILEAAAIVELLHVVSLLQDDVMDQ------------HDQRRGIKTPRAMY 107 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT------------CSBSSSSBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC------------CCCCCCCCcHHHhc
Confidence 344555667788899999999762 56788888877666
No 53
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=52.65 E-value=72 Score=29.83 Aligned_cols=44 Identities=25% Similarity=0.198 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 222 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 222 g~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
|.+.+....+...-+.+=.++-|-||+.|= +|+|.|++|+-..|
T Consensus 69 g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 69 GYGGPFHVHLAATVEFIHTATLLHDDVVDE------------SRQRRGRPTANLLW 112 (341)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhc
Confidence 333333344555667788899999999773 56788888876655
No 54
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=46.99 E-value=40 Score=31.37 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCC------------CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC
Q 018156 129 QCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 190 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~ 190 (360)
..+...-+.+=.|+=|.|||.| .++.|.||+|+=..+|...|--...-+..+|...|..++.
T Consensus 205 ~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 278 (317)
T 4f62_A 205 AKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD 278 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3455566677789999999977 3567888889888888888888888888888888877653
No 55
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=44.42 E-value=1.7e+02 Score=26.48 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhh--hcccCCccccCCCccchhccCcccHHHHH
Q 018156 222 GQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 222 g~~~~~~~~l~~~G~~lG~afQI~DDi--lD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
|.+++..-.+...-+.+=.+.-|-||+ .|= +|+|.|++|+-..|
T Consensus 62 g~~~~~~~~~A~avEliH~asLIHDDIP~~D~------------s~~RRG~pt~h~~~ 107 (284)
T 2ftz_A 62 GVEEEXLLDVAVAVELFHTASLIHDDLPPIDN------------ADFRRGXPSCHRTY 107 (284)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC------------CCCCCCCccHHhhc
Confidence 445443344555666777888899999 873 56788888887766
No 56
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=43.45 E-value=43 Score=31.21 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCC------------CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC
Q 018156 129 QCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 190 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~ 190 (360)
..+...-+.+=.|+=|.|||.| .++.|.||+|+=..+|...|--...-+...|...|..++.
T Consensus 234 ~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~ 307 (324)
T 3uca_A 234 KKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKG 307 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455556677789999999966 3457778888888888887877777777888888877653
No 57
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=43.01 E-value=1.2e+02 Score=28.21 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=33.6
Q ss_pred hcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHH
Q 018156 220 LSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 278 (360)
Q Consensus 220 lag-~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~a 278 (360)
+++ .+.+....+...-+.+=.++=|-||+.| .+|+|.|++|+-..|.
T Consensus 69 ~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G 116 (334)
T 3pko_A 69 FGNAATPAQLQAGAAAIEILHVGTLIHDDVID------------DSPTRRGVRTIQMTYG 116 (334)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC------------CCCCcCCCccHHHHcC
Confidence 444 3555555566666788889999999977 2567888888766653
No 58
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=42.35 E-value=36 Score=31.45 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCC------------CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC
Q 018156 129 QCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 190 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~ 190 (360)
..+...-+.|=.|+=|.|||.| .++.|.||+|+=..+|...|--...-+...|...|..++.
T Consensus 206 ~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 279 (304)
T 3lsn_A 206 KALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDA 279 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3455556677789999999987 5688999999988899888888888888888888777653
No 59
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=41.75 E-value=44 Score=30.71 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCC------------CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCC
Q 018156 129 QCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK 189 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~ 189 (360)
..+...-+.+=.|+=|.|||.| .++.+.||+|+=..+|...|--...-+..+|...|..++
T Consensus 201 ~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 201 EHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455555667788999999987 467788888887777777777777777777777777664
No 60
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=38.88 E-value=1.5e+02 Score=27.27 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=29.5
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 220 LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 220 lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
+.|.+.+....+...-+.+=.+.-|-||+.|= +|+|.|++|+-..|
T Consensus 58 ~~g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 58 LNDTQKDDLIRTAVSLELVHMASLVHDDYIDN------------SDMRRGNTSVHIAF 103 (325)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHT
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCCCccccc
Confidence 33433333334555566777788999999872 56778888876554
No 61
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=38.40 E-value=1.3e+02 Score=27.41 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHH
Q 018156 230 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 278 (360)
Q Consensus 230 ~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~a 278 (360)
.+...-+.+=.+.=|-||+.| .+|+|.|++|+-..|-
T Consensus 65 ~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G 101 (299)
T 1v4e_A 65 SSLAALELVHLASLLHDDVID------------GARFRRGKETINFMYG 101 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHC
T ss_pred HHHHHHHHHHHHHHhhCCCCC------------CCCCCCCCCchhhhcC
Confidence 344555667778889999977 2567888888776653
No 62
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=36.60 E-value=1.3e+02 Score=28.22 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 230 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 230 ~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
.+...-+.+=.++-|-||+.|= +|+|.|++|+-..|
T Consensus 69 ~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 104 (358)
T 4dhd_A 69 PAAAIVELIHNYSLIYDDIIDR------------GDVRRGLPTVRKAF 104 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT------------CCEETTEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHCccccC------------CCCcCCCccHHHhc
Confidence 4455557778889999999772 56788888877666
No 63
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=35.99 E-value=2.4e+02 Score=26.07 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 222 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 222 g~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
|.+.+....+...-..+=.+.=|-||+.|= +|+|.|++|+-..|
T Consensus 56 ~~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 99 (340)
T 2e8v_A 56 NLPKDQLAIVSQIVELLHNSSLLIDDIEDN------------APLRRGQTTSHLIF 99 (340)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCcchhhcc
Confidence 445444444555566777788899999762 56788888876554
No 64
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=35.78 E-value=51 Score=30.87 Aligned_cols=61 Identities=28% Similarity=0.309 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC------------CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcC
Q 018156 128 QQCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL 188 (360)
Q Consensus 128 ~~~lA~~vEllH~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~ 188 (360)
...+...-+.+=.|+=|.|||.| .++.+.||+|+=..+|...+--..+-+..+|...|..+
T Consensus 244 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l 316 (335)
T 2h8o_A 244 RQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPY 316 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33455556677788999999976 24567777787777776666666666666666666554
No 65
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=35.49 E-value=53 Score=30.23 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCC------------CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcC
Q 018156 129 QCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL 188 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~ 188 (360)
..+...-+.|=.|+=|.|||.| .++.+.||+|+=..+|...|--...-+...|...|..+
T Consensus 209 ~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 209 GLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556677788999999976 24567777777777777766666666666666666554
No 66
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=33.19 E-value=2.1e+02 Score=26.28 Aligned_cols=46 Identities=22% Similarity=0.018 Sum_probs=30.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 220 LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 220 lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
+.|.+.+..-.+...-+.+=.++=|.||+.|= +|+|.|++|+-..|
T Consensus 53 ~~~~~~~~~~~~A~avEliH~asLihDDi~D~------------s~~RRG~pt~h~~~ 98 (330)
T 1wmw_A 53 AHGAPLEAGLEAATALELFQNWVLVHDDIEDG------------SEERRGRPALHRLH 98 (330)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHS
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHcccccC------------CCCCCCCCcccccc
Confidence 33445444445555666777889999999772 56778888865544
No 67
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=32.11 E-value=2.6e+02 Score=24.60 Aligned_cols=60 Identities=7% Similarity=0.055 Sum_probs=38.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCC
Q 018156 195 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGT 254 (360)
Q Consensus 195 ~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~ 254 (360)
+++|+++-..-+|..+...+..-+.=-..+++..+.+.++-...+...-+.||+..|..+
T Consensus 154 ~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE 213 (300)
T 1di1_A 154 LGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKE 213 (300)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 789998654444433322222111112245666667788889999999999999999654
No 68
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=31.98 E-value=42 Score=31.34 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCC------------CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC
Q 018156 129 QCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 190 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~ 190 (360)
..+...-+.|=.|+=|.|||.| .++.+.||+|+=..+|...|--...-+...|...|..++.
T Consensus 212 ~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 212 DRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3455556677789999999966 3467788888888888877777777777777777766543
No 69
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=31.59 E-value=71 Score=26.01 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHH---HHHHHhhhhhhhHH
Q 018156 170 AILAGDLLISRALVALASLKHTEVI---MECYMQKTYNKTAA 208 (360)
Q Consensus 170 Ail~Gd~L~~~a~~~l~~~~~~~~~---~~~Y~~~~~~KTa~ 208 (360)
-||+||++-+..+.+|+..+....+ -+...++.+.|+..
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl 113 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIR 113 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999987765543 44455666777643
No 70
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=31.54 E-value=1.3e+02 Score=28.23 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=23.6
Q ss_pred HHhcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHH
Q 018156 218 AYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 218 a~lag-~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
+.+.+ .+.+....+...-+.+=.+.-|-||+.|= +|+|.|++|+-..|
T Consensus 86 ~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~ 134 (360)
T 3lmd_A 86 SEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE------------ASMRRGVPSANARW 134 (360)
T ss_dssp HTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC------------CCCCCCCCcHHhhc
Confidence 33444 34333344555667778889999999772 56778888876665
No 71
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=31.09 E-value=2.1e+02 Score=25.93 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHH
Q 018156 230 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 278 (360)
Q Consensus 230 ~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~a 278 (360)
.+...-+.+=.+.=|-||+.|= +|+|.|++|+-..|.
T Consensus 73 ~~A~avEliH~asLIHDDi~D~------------s~~RRG~pt~h~~~G 109 (289)
T 2azj_A 73 GGALAIEILHSASLALCDIVDL------------DATRRGDKAAWVVYG 109 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT------------CCBSSSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCC------------CCCCCCCccHHHhcC
Confidence 3445556677788899999762 567888888766653
No 72
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=30.93 E-value=2.9e+02 Score=25.24 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhhhhh--hcccCCccccCCCccchhccCcccHHHHHH
Q 018156 229 TLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILFA 278 (360)
Q Consensus 229 ~~l~~~G~~lG~afQI~DDi--lD~~~~~~~~GK~~g~Dl~egk~Tlp~l~a 278 (360)
..+...-+.+=.+.-|-||+ .|= +|+|.|++|+-..|-
T Consensus 73 ~~~A~aiEliH~aSLIHDDiP~mD~------------s~~RRG~pt~h~~~G 112 (309)
T 3pde_A 73 WRPVMALELLHTYSLIHDDLPAMDN------------DALRRGEPTNHVKFG 112 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHCCchhccC------------CCCCCCCcchhhhcC
Confidence 34455567777889999999 873 578888999877663
No 73
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=30.58 E-value=1.7e+02 Score=27.10 Aligned_cols=45 Identities=20% Similarity=0.148 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCCccccCCCccchhccCcccHHHHHH
Q 018156 222 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 278 (360)
Q Consensus 222 g~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~~~~~GK~~g~Dl~egk~Tlp~l~a 278 (360)
|.+++....+...-..+=.++-|-||+.| .+|+|.|++|+-..|-
T Consensus 62 g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G 106 (342)
T 1wy0_A 62 GGDPLRAIYPAVAIELIHNYSLVHDDIMD------------MDETRRGKPTVHRIWG 106 (342)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCCSTTSCCHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCccc------------CCCCCCCCCccccccC
Confidence 33333233445555677778899999987 2567888888776653
No 74
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=29.78 E-value=3e+02 Score=24.54 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=38.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccCC
Q 018156 195 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGT 254 (360)
Q Consensus 195 ~~~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD~~~~ 254 (360)
+++|+++-..-+|..+......-+.=-..+++..+...++-...+...-+.||+..|..+
T Consensus 168 ~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 168 LGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 789998755555543322222111111245666667788889999999999999999643
No 75
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=28.72 E-value=1e+02 Score=28.38 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCC------------CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCC
Q 018156 129 QCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK 189 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~ 189 (360)
..+...-+.|=.|+=|.|||.| .++.|.||+|+=..+|...|--...-+...|...|..++
T Consensus 213 ~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 285 (313)
T 3lom_A 213 SALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFG 285 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455556677789999999976 346788899988888888887777777777777776654
No 76
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=28.04 E-value=40 Score=31.05 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhccCC------------CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHcCCC
Q 018156 130 CIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 190 (360)
Q Consensus 130 ~lA~~vEllH~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~ 190 (360)
.+...-+.+=.|+=|.|||.| .++.+.||+|+=..+|...|--...-+..+|...|..++.
T Consensus 213 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 285 (302)
T 3p8r_A 213 HLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPY 285 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 445555677788999999966 3456778888877788877777777777778777776653
No 77
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=25.93 E-value=85 Score=29.40 Aligned_cols=52 Identities=21% Similarity=0.076 Sum_probs=27.4
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 018156 197 CYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILD 250 (360)
Q Consensus 197 ~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDilD 250 (360)
.|+-...+|- +-..-+.+++.+.|.+.+....+...-+.+=.++-|-||+.|
T Consensus 58 ~y~~~~gGKr--lRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 58 EHLIAAGGKR--LRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHTTTCCC--HHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHhCCCCc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 4554445553 111222233333343333334455566778889999999977
No 78
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=25.18 E-value=2.3e+02 Score=26.02 Aligned_cols=37 Identities=19% Similarity=0.029 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhhhhh--hcccCCccccCCCccchhccCcccHHHHH
Q 018156 229 TLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 229 ~~l~~~G~~lG~afQI~DDi--lD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
..+...-+.+=.++=|-||+ .|= +|+|.|++|+-..|
T Consensus 77 ~~~A~aiEliH~aSLIHDDIp~mD~------------s~~RRG~pt~h~~~ 115 (311)
T 3llw_A 77 FKIALSIECLHTYSLIHDDLPCMDN------------AALRRNHPTLHAKY 115 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCccccCC------------CcccCCCCchhhhc
Confidence 33444455667788899999 772 57788888876655
No 79
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=25.12 E-value=3.7e+02 Score=24.26 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=30.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhhhhhh--hcccCCccccCCCccchhccCcccHHHHH
Q 018156 220 LSGQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 277 (360)
Q Consensus 220 lag~~~~~~~~l~~~G~~lG~afQI~DDi--lD~~~~~~~~GK~~g~Dl~egk~Tlp~l~ 277 (360)
+.|.+.+....+...-+.+=.+.=|-||+ .|= +|+|.|++|+-..|
T Consensus 58 ~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~------------s~~RRG~pt~h~~~ 105 (299)
T 1rqj_A 58 MFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDD------------DDLRRGLPTCHVKF 105 (299)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CCEETTEECHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhcC------------CCCCCCCCChhhhc
Confidence 33445443344555556677788899999 873 57788888876665
No 80
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=24.71 E-value=3.9e+02 Score=24.17 Aligned_cols=66 Identities=23% Similarity=0.128 Sum_probs=40.1
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhhhh--hcccCCccccCCCccchhccCcccHH
Q 018156 197 CYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAP 274 (360)
Q Consensus 197 ~Y~~~~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DDi--lD~~~~~~~~GK~~g~Dl~egk~Tlp 274 (360)
.|. ...+|-=.- .-+.+++.+.|.+.+....+...-+.+=.++=|-||+ .| .+|+|.|++|+-
T Consensus 35 ~y~-~~gGKrlRp--~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD------------~s~~RRG~pt~h 99 (297)
T 3m0g_A 35 AYA-AQGGKRLRA--FLAIESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMD------------NDDLRRGLPTVH 99 (297)
T ss_dssp HHH-HSCSCCHHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHH
T ss_pred HHH-cCCCCcHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccC------------CCCccCCCCCch
Confidence 466 555563211 1122233344556655555666667788899999998 66 256788888876
Q ss_pred HHH
Q 018156 275 ILF 277 (360)
Q Consensus 275 ~l~ 277 (360)
..|
T Consensus 100 ~~~ 102 (297)
T 3m0g_A 100 KKW 102 (297)
T ss_dssp HHS
T ss_pred hhc
Confidence 655
No 81
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=20.82 E-value=6.3e+02 Score=25.12 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=32.2
Q ss_pred HHHHHhhhhhhhHHHH-HHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHhhhhhhhcccC
Q 018156 195 MECYMQKTYNKTAALV-SNSCKAVAYLSG-QREEVATLA---FEYGKNLGLAYQLIDDILDFTG 253 (360)
Q Consensus 195 ~~~Y~~~~~~KTa~L~-~~~~~~ga~lag-~~~~~~~~l---~~~G~~lG~afQI~DDilD~~~ 253 (360)
+++|++...--+|..+ ...+.+|+ +. .+.+..+.+ -++-+..++..-+.||+..+..
T Consensus 395 ~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~ 456 (555)
T 3n0f_A 395 FDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASA 456 (555)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhh
Confidence 6777776444334322 11222221 22 355554433 3567788888999999999853
No 82
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=20.81 E-value=1.9e+02 Score=26.38 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCC------CCCCCCCCCCcccccc
Q 018156 129 QCIAEITEMIHVASLIHDDVLD------DADTRRGIGSLSSVMG 166 (360)
Q Consensus 129 ~~lA~~vEllH~asLihDDI~D------~s~~RRG~pt~~~~~G 166 (360)
..+...-+.+=.|+=|.|||.| +.+.+.|++|+=..|+
T Consensus 190 ~~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~a 233 (295)
T 3ipi_A 190 ERFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYM 233 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHH
Confidence 3445555667788999999987 2334555555444333
No 83
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=20.29 E-value=5.2e+02 Score=23.95 Aligned_cols=59 Identities=8% Similarity=-0.053 Sum_probs=33.4
Q ss_pred HHHHHhhhhhhhHHHHHHH-HHHHHHhcCCCHHHHH--HHHHHHHHHHHHHhhhhhhhcccCC
Q 018156 195 MECYMQKTYNKTAALVSNS-CKAVAYLSGQREEVAT--LAFEYGKNLGLAYQLIDDILDFTGT 254 (360)
Q Consensus 195 ~~~Y~~~~~~KTa~L~~~~-~~~ga~lag~~~~~~~--~l~~~G~~lG~afQI~DDilD~~~~ 254 (360)
+++|+++-..-+|..+.++ +..+.- -..+++..+ .+.++-+..+...-+.||+..|..+
T Consensus 208 ~eEYl~~r~~s~g~~~~~~l~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S~~kE 269 (382)
T 3kb9_A 208 VEEYLELRRLTFAHWIWTDLLEPSSG-CELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKE 269 (382)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCHHHHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788877444344332221 222210 122343322 4566778889999999999998643
Done!