RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018156
(360 letters)
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 86.7 bits (213), Expect = 5e-20
Identities = 61/312 (19%), Positives = 99/312 (31%), Gaps = 60/312 (19%)
Query: 75 LASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEI 134
L Y + GK++ + L V +L Q I E+
Sbjct: 7 LLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPEDKL-----------------QIIIEV 47
Query: 135 TEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNK-------------------------- 168
TEM+H ASL+ DD+ D++ RRG S+ G
Sbjct: 48 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAV 107
Query: 169 --LAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREE 226
+L + L +T E Y KT L + + S +E+
Sbjct: 108 KLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKED 167
Query: 227 VATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME---EFP 283
+ LGL +Q+ DD + S K+ DL G + P + A+ E
Sbjct: 168 L----KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPEST 223
Query: 284 QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATN 343
Q++ + ++N + YL + T + + A ID+
Sbjct: 224 QVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGG------NP 277
Query: 344 ARTALVHITQKI 355
ALV K+
Sbjct: 278 ELVALVKHLSKM 289
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 72.8 bits (177), Expect = 7e-15
Identities = 44/315 (13%), Positives = 92/315 (29%), Gaps = 60/315 (19%)
Query: 89 GKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV 148
GK ++ L+ + + ++ R + E+ L+ DD+
Sbjct: 51 GKCNRGLTVVAAYRELSGPGQKDAESL----------RCALAVGWCIELFQAFFLVADDI 100
Query: 149 LDDADTRRGIGSLSSVMGNKLAILAGDLLISRA--------------------------- 181
+D + TRRG G L + L+ +
Sbjct: 101 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAY 160
Query: 182 ------LVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQ-------REEVA 228
++ L + ++V + + ++ Y + ++ +E
Sbjct: 161 QTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEH 220
Query: 229 TLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-PQLRA 287
A +G +Q+ DD LD G A GK TD+++ + ++ ++ P+ R
Sbjct: 221 ENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVG-TDIQDNKCSWLVVQCLQRVTPEQRQ 279
Query: 288 FINS--SSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNAR 345
+ P V + E + I+ +
Sbjct: 280 LLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSN------RLPK 333
Query: 346 TALVHITQKIITRNK 360
+ + QKI R K
Sbjct: 334 EIFLGLAQKIYKRQK 348
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 71.6 bits (174), Expect = 8e-15
Identities = 64/306 (20%), Positives = 115/306 (37%), Gaps = 56/306 (18%)
Query: 56 ELSLISMRLRSMVVAEVPELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNV 115
EL + R+ ++ PE GK L + +L V E
Sbjct: 4 ELEKVKERIEQILSQFFPE---QIMKDLPLY--GKMLRVRLSILSFKNRGVEIGE----- 53
Query: 116 LGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGD 175
E++H+ASL+HDDV+D A RRG +++ + G+K A+ AGD
Sbjct: 54 -----------DAISSLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGD 102
Query: 176 LLISRALVALASLKHTEVIMEC--------------------------YMQKTYNKTAAL 209
L++ A + + + ++ Y++ K+ AL
Sbjct: 103 LVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGAL 162
Query: 210 VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNG 269
+ + A L G+ E + G +G YQ+ DDI+DF G DL+NG
Sbjct: 163 FGLALQLPALLEGELGEDL---YNLGVTIGTIYQMFDDIMDFAGMEKIGKDGF-LDLKNG 218
Query: 270 IITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAA 329
+ + P++ AME+FP+ R + + ++ ++ + ++ E
Sbjct: 219 VASFPLVTAMEKFPEARQMFENR-----DWSGLMSFMREKGILKECEETLKVLVKNVIIE 273
Query: 330 IDSLPE 335
L +
Sbjct: 274 NSWLRD 279
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 63.5 bits (153), Expect = 5e-12
Identities = 72/327 (22%), Positives = 107/327 (32%), Gaps = 96/327 (29%)
Query: 73 PELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIA 132
+ Y G GK+L P ++ V T L A
Sbjct: 30 TPVVETMQYGALLG--GKRLRPFLVYATGHMFGVSTNTLDA-----------------PA 70
Query: 133 EITEMIHVASLIHDDVLDDADTRR--GIGSLSSVMGNKLAILAGDLLISRALVALASLKH 190
E IH SLIHDD+ D G+ + G AILAGD L + A L+
Sbjct: 71 AAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADM 130
Query: 191 TEV------------------------------------IMECYMQKTYNKTAALVSNSC 214
EV ++ + +KT AL+ +
Sbjct: 131 PEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAV 190
Query: 215 KAVAYLSGQREEVATLAF-EYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITA 273
+ A +G + A +Y +++GLA+Q+ DDILD G +A+LGK D + G T
Sbjct: 191 RLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTY 250
Query: 274 PILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSL 333
P L +E+ + A A ++ L
Sbjct: 251 PALLGLEQ---------------------------------ARKKARDLIDDARQSLKQL 277
Query: 334 PETHDVDATNARTALVHITQKIITRNK 360
E + +AL + II RNK
Sbjct: 278 AEQ-----SLDTSALEALADYIIQRNK 299
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 51.2 bits (121), Expect = 5e-08
Identities = 56/245 (22%), Positives = 86/245 (35%), Gaps = 55/245 (22%)
Query: 73 PELASAAGYFFKEGVEGKKLCPTVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIA 132
+L + Y G GK++ P ++LL +LN A
Sbjct: 27 TQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTEYE-----------------LGMKSA 67
Query: 133 EITEMIHVASLIHDDVLDDADTRRG--IGSLSSVMGNKLAILAGDLLISRALVALASLKH 190
EMIH SLIHDD+ + + V G AILAGD L+++A ++S
Sbjct: 68 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR 127
Query: 191 TEVI----------------------------------MECYMQKTYNKTAALVSNSCKA 216
+E KT AL++ + +
Sbjct: 128 LTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMS 187
Query: 217 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 276
A ++ + Y +LG+ +Q+ DD+LD G A LGK +DL N T L
Sbjct: 188 AADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSL 247
Query: 277 FAMEE 281
+
Sbjct: 248 LGKDG 252
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 120
Score = 29.9 bits (67), Expect = 0.16
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 15 PRNSLPSCRWILSHRRYGHQPTFRNSNENKKHLDPFSLVGDELSLISMR-----LRSMVV 69
+LP+CR +L + G Q + +L+ IS L SM+
Sbjct: 9 QVPALPACRPLLRLQCNGSQVPEAVLRD----------CCQQLAHISEWCRCGALYSMLD 58
Query: 70 AEVPELASAAGYFFKEGVEGKKLCPTVILLM--ATALNVC 107
+ E + G C ++ + A+ VC
Sbjct: 59 SMYKEHGAQEGQAGTGAFPR---CRREVVKLTAASITAVC 95
>d1beaa_ a.52.1.2 (A:) Hageman factor/amylase inhibitor {Maize (Zea
mays) [TaxId: 4577]}
Length = 116
Score = 26.7 bits (59), Expect = 1.9
Identities = 26/99 (26%), Positives = 33/99 (33%), Gaps = 22/99 (22%)
Query: 15 PRNSLPSCRWILSHRRYGHQPTFRNSNENKKHLDPFSLVGD---ELSLISMR-----LRS 66
P N LPSCRW ++ R G P L L EL+ I L
Sbjct: 9 PHNPLPSCRWYVTSRTCGIGP----------RLPWPELKRRCCRELADIPAYCRCTALSI 58
Query: 67 MVVAEVPELASAAGYFFKEGVEGKKLCPT-VILLMATAL 104
++ +P A E + G CP V A L
Sbjct: 59 LMDGAIPPGPDAQLEGRLEDLPG---CPREVQRGFAATL 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.375
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,233,195
Number of extensions: 54399
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 10
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)