Query 018157
Match_columns 360
No_of_seqs 209 out of 1186
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14143 heat shock protein Gr 100.0 1.1E-46 2.3E-51 354.9 21.1 164 178-354 66-229 (238)
2 PRK14153 heat shock protein Gr 100.0 1.3E-46 2.8E-51 345.1 19.5 157 181-351 35-191 (194)
3 PRK14148 heat shock protein Gr 100.0 2.3E-46 5.1E-51 343.7 20.3 156 179-348 40-195 (195)
4 PRK14161 heat shock protein Gr 100.0 2.3E-46 5E-51 339.5 19.8 160 178-349 18-178 (178)
5 PRK14141 heat shock protein Gr 100.0 4.2E-46 9.2E-51 345.1 20.1 157 187-351 39-195 (209)
6 PRK14147 heat shock protein Gr 100.0 4.8E-46 1E-50 335.7 19.1 146 187-348 26-171 (172)
7 PRK14151 heat shock protein Gr 100.0 7E-46 1.5E-50 335.8 19.4 149 186-347 27-175 (176)
8 PRK14155 heat shock protein Gr 100.0 9.1E-46 2E-50 342.7 19.9 154 187-351 21-175 (208)
9 PRK14140 heat shock protein Gr 100.0 1.1E-45 2.4E-50 338.3 20.0 154 180-347 38-191 (191)
10 PRK14158 heat shock protein Gr 100.0 1.2E-45 2.7E-50 338.7 19.1 152 181-347 42-194 (194)
11 PRK14145 heat shock protein Gr 100.0 1.6E-45 3.4E-50 338.3 19.8 150 181-347 47-196 (196)
12 PRK14163 heat shock protein Gr 100.0 1.6E-45 3.4E-50 342.1 19.7 150 184-354 45-194 (214)
13 PRK14162 heat shock protein Gr 100.0 2.3E-45 5E-50 336.9 19.7 149 185-347 45-194 (194)
14 PRK14160 heat shock protein Gr 100.0 2.7E-45 6E-50 340.0 20.3 158 172-347 54-211 (211)
15 PRK14139 heat shock protein Gr 100.0 2.5E-45 5.5E-50 334.5 19.5 146 186-348 39-184 (185)
16 PRK14150 heat shock protein Gr 100.0 3.3E-45 7.2E-50 335.4 19.7 151 181-347 43-193 (193)
17 PRK14146 heat shock protein Gr 100.0 3.8E-45 8.3E-50 340.0 19.6 152 184-349 59-214 (215)
18 PRK14144 heat shock protein Gr 100.0 5.8E-45 1.3E-49 335.3 20.1 162 168-348 38-199 (199)
19 COG0576 GrpE Molecular chapero 100.0 4.2E-45 9.1E-50 334.5 19.1 151 186-349 43-193 (193)
20 PRK14159 heat shock protein Gr 100.0 5.1E-45 1.1E-49 330.3 18.3 145 188-347 32-176 (176)
21 PRK14154 heat shock protein Gr 100.0 1.3E-44 2.8E-49 334.8 19.8 148 186-346 59-207 (208)
22 PRK10325 heat shock protein Gr 100.0 1.5E-44 3.2E-49 332.0 19.0 139 198-349 58-196 (197)
23 PRK14149 heat shock protein Gr 100.0 1.9E-44 4.2E-49 330.1 19.2 146 188-348 45-190 (191)
24 PRK14157 heat shock protein Gr 100.0 2.1E-43 4.5E-48 330.2 18.2 142 186-348 84-225 (227)
25 PRK14156 heat shock protein Gr 100.0 6.3E-43 1.4E-47 316.9 18.4 157 171-347 20-177 (177)
26 KOG3003 Molecular chaperone of 100.0 1.6E-42 3.4E-47 323.8 19.1 163 181-351 73-235 (236)
27 PRK14142 heat shock protein Gr 100.0 1.4E-41 3E-46 316.9 17.9 144 192-355 46-190 (223)
28 PRK14164 heat shock protein Gr 100.0 8.9E-41 1.9E-45 311.2 16.8 139 187-348 78-217 (218)
29 cd00446 GrpE GrpE is the adeni 100.0 1.6E-39 3.5E-44 281.0 16.6 136 196-345 2-137 (137)
30 PF01025 GrpE: GrpE; InterPro 100.0 1.5E-39 3.2E-44 285.9 12.4 152 182-347 14-165 (165)
31 PF06156 DUF972: Protein of un 82.9 4.1 8.9E-05 34.9 6.3 72 175-246 11-82 (107)
32 COG4467 Regulator of replicati 68.1 13 0.00028 32.4 5.4 71 175-247 11-84 (114)
33 PF14357 DUF4404: Domain of un 66.5 8.1 0.00017 31.7 3.7 17 276-292 69-85 (85)
34 PF06120 Phage_HK97_TLTM: Tail 66.5 1E+02 0.0022 31.1 12.0 79 169-247 64-148 (301)
35 KOG0742 AAA+-type ATPase [Post 64.5 96 0.0021 33.4 11.8 21 194-214 151-171 (630)
36 COG4026 Uncharacterized protei 63.9 1.1E+02 0.0024 30.2 11.3 69 176-246 132-200 (290)
37 cd07627 BAR_Vps5p The Bin/Amph 63.7 60 0.0013 30.3 9.4 54 186-239 143-196 (216)
38 KOG0250 DNA repair protein RAD 63.7 83 0.0018 36.8 11.9 122 177-313 392-517 (1074)
39 PTZ00464 SNF-7-like protein; P 63.0 1.4E+02 0.0031 28.4 12.2 25 272-296 103-127 (211)
40 PF03938 OmpH: Outer membrane 63.0 1E+02 0.0022 26.7 11.9 48 198-245 81-128 (158)
41 PRK13169 DNA replication intia 62.9 41 0.00089 29.1 7.5 45 175-219 11-55 (110)
42 PF12761 End3: Actin cytoskele 60.9 59 0.0013 30.9 8.7 28 170-197 94-121 (195)
43 COG0711 AtpF F0F1-type ATP syn 60.8 1.3E+02 0.0028 27.1 11.1 79 168-246 47-126 (161)
44 PF07795 DUF1635: Protein of u 59.4 1.1E+02 0.0023 29.7 10.2 60 173-232 2-61 (214)
45 cd07664 BAR_SNX2 The Bin/Amphi 58.2 74 0.0016 30.6 9.1 54 186-239 159-212 (234)
46 COG2433 Uncharacterized conser 57.8 2.4E+02 0.0052 31.4 13.6 129 178-330 421-554 (652)
47 PRK00409 recombination and DNA 57.0 1.2E+02 0.0025 34.2 11.6 24 304-329 637-660 (782)
48 cd07623 BAR_SNX1_2 The Bin/Amp 54.6 1.9E+02 0.0041 27.2 11.2 50 188-237 151-200 (224)
49 PRK07352 F0F1 ATP synthase sub 53.3 1.5E+02 0.0033 26.6 9.9 56 178-233 70-126 (174)
50 KOG2856 Adaptor protein PACSIN 52.6 2.1E+02 0.0046 30.2 11.7 57 168-228 170-226 (472)
51 PRK05759 F0F1 ATP synthase sub 52.4 1.6E+02 0.0034 25.6 10.0 119 177-310 29-148 (156)
52 PF13805 Pil1: Eisosome compon 52.0 2.6E+02 0.0056 27.9 12.1 60 191-250 170-229 (271)
53 PRK14472 F0F1 ATP synthase sub 51.4 1.7E+02 0.0038 26.2 10.0 19 179-197 70-88 (175)
54 PF10146 zf-C4H2: Zinc finger- 50.2 2.5E+02 0.0053 27.2 11.3 69 179-248 32-103 (230)
55 PLN03217 transcription factor 50.0 1E+02 0.0022 26.1 7.4 56 171-226 16-71 (93)
56 PF09457 RBD-FIP: FIP domain ; 49.6 69 0.0015 24.0 5.8 31 173-203 1-31 (48)
57 PRK04406 hypothetical protein; 48.7 1.4E+02 0.0031 24.0 8.4 47 173-219 5-51 (75)
58 TIGR03185 DNA_S_dndD DNA sulfu 48.0 4E+02 0.0086 29.0 14.0 36 181-216 430-465 (650)
59 PF09325 Vps5: Vps5 C terminal 47.7 1.5E+02 0.0032 27.2 9.1 54 187-240 164-217 (236)
60 TIGR01069 mutS2 MutS2 family p 46.7 2.1E+02 0.0045 32.2 11.5 9 319-327 638-646 (771)
61 PF09006 Surfac_D-trimer: Lung 46.7 51 0.0011 24.7 4.7 27 189-215 2-28 (46)
62 KOG1962 B-cell receptor-associ 46.2 52 0.0011 31.7 5.9 38 181-218 174-211 (216)
63 PRK02793 phi X174 lysis protei 45.3 1.5E+02 0.0034 23.5 8.6 45 175-219 4-48 (72)
64 CHL00019 atpF ATP synthase CF0 45.2 2.4E+02 0.0052 25.6 10.0 119 177-310 49-168 (184)
65 TIGR03321 alt_F1F0_F0_B altern 45.2 2.8E+02 0.0061 26.4 13.2 102 201-311 91-196 (246)
66 PF06810 Phage_GP20: Phage min 45.0 2.2E+02 0.0047 25.7 9.5 61 174-234 29-93 (155)
67 TIGR02894 DNA_bind_RsfA transc 44.3 2.3E+02 0.0049 26.4 9.5 49 170-218 78-136 (161)
68 KOG2911 Uncharacterized conser 42.9 4.5E+02 0.0097 28.1 13.5 40 167-206 228-267 (439)
69 PRK14150 heat shock protein Gr 42.7 1.8E+02 0.004 27.2 8.9 35 198-232 46-80 (193)
70 KOG0971 Microtubule-associated 42.6 4.7E+02 0.01 30.8 13.2 73 173-246 225-317 (1243)
71 KOG3990 Uncharacterized conser 41.9 1.8E+02 0.0039 29.1 8.9 59 176-239 229-287 (305)
72 COG1579 Zn-ribbon protein, pos 41.9 1.8E+02 0.004 28.4 9.0 47 180-226 111-157 (239)
73 PF15290 Syntaphilin: Golgi-lo 41.7 3.9E+02 0.0085 27.1 12.8 68 176-246 72-140 (305)
74 cd07622 BAR_SNX4 The Bin/Amphi 41.6 3E+02 0.0066 25.8 10.6 66 173-238 127-192 (201)
75 PF12329 TMF_DNA_bd: TATA elem 41.4 1.2E+02 0.0027 24.1 6.6 23 178-200 4-26 (74)
76 PRK00409 recombination and DNA 41.1 2.6E+02 0.0057 31.5 11.3 49 174-222 518-566 (782)
77 PF11559 ADIP: Afadin- and alp 41.1 1.9E+02 0.0041 25.3 8.4 49 176-224 70-118 (151)
78 PF03194 LUC7: LUC7 N_terminus 41.0 1.4E+02 0.003 29.1 8.1 45 227-290 191-235 (254)
79 PRK11637 AmiB activator; Provi 40.7 1.3E+02 0.0028 30.9 8.2 47 179-225 89-135 (428)
80 PRK14127 cell division protein 40.4 1.4E+02 0.003 25.9 7.2 44 174-217 25-68 (109)
81 PRK14143 heat shock protein Gr 39.4 3.2E+02 0.007 26.6 10.3 49 176-224 71-123 (238)
82 cd07665 BAR_SNX1 The Bin/Amphi 39.0 2.7E+02 0.0057 27.0 9.6 47 187-233 160-206 (234)
83 PF10481 CENP-F_N: Cenp-F N-te 37.9 4.5E+02 0.0097 26.7 12.0 77 171-250 11-87 (307)
84 PRK06569 F0F1 ATP synthase sub 37.8 2.7E+02 0.0058 25.5 8.9 68 173-244 56-124 (155)
85 PRK08475 F0F1 ATP synthase sub 37.6 3.1E+02 0.0067 24.7 9.6 73 165-237 60-144 (167)
86 PRK08476 F0F1 ATP synthase sub 37.4 2.9E+02 0.0062 24.3 11.1 69 175-243 55-124 (141)
87 TIGR01069 mutS2 MutS2 family p 37.3 3.4E+02 0.0073 30.6 11.4 26 195-220 527-552 (771)
88 PRK04325 hypothetical protein; 37.2 2.2E+02 0.0047 22.8 8.4 44 175-218 5-48 (74)
89 TIGR03752 conj_TIGR03752 integ 36.8 3.4E+02 0.0074 29.2 10.7 48 173-220 60-107 (472)
90 PF06409 NPIP: Nuclear pore co 36.2 1E+02 0.0022 30.4 6.2 45 179-223 127-171 (265)
91 PRK02119 hypothetical protein; 36.1 2.2E+02 0.0049 22.7 8.6 47 175-221 5-51 (73)
92 PRK14160 heat shock protein Gr 36.0 4E+02 0.0087 25.6 10.8 45 189-233 57-104 (211)
93 PF04740 LXG: LXG domain of WX 35.7 3.3E+02 0.0072 24.5 13.6 79 172-251 3-82 (204)
94 PRK13453 F0F1 ATP synthase sub 35.2 3.4E+02 0.0074 24.5 10.2 119 177-310 43-162 (173)
95 COG2433 Uncharacterized conser 35.1 4.2E+02 0.009 29.6 11.2 75 174-249 431-507 (652)
96 PRK11637 AmiB activator; Provi 34.8 2.6E+02 0.0056 28.7 9.4 39 181-219 84-122 (428)
97 KOG0995 Centromere-associated 34.7 4.6E+02 0.01 28.9 11.4 36 270-305 370-406 (581)
98 KOG0796 Spliceosome subunit [R 34.0 5.4E+02 0.012 26.4 11.9 95 180-293 123-234 (319)
99 PF05218 DUF713: Protein of un 33.8 2.9E+02 0.0062 25.7 8.7 107 203-319 49-157 (182)
100 PF13870 DUF4201: Domain of un 33.7 3.5E+02 0.0077 24.3 9.2 11 179-189 56-66 (177)
101 PF07795 DUF1635: Protein of u 33.0 1.7E+02 0.0037 28.3 7.1 45 176-220 16-60 (214)
102 PF04977 DivIC: Septum formati 32.9 1.7E+02 0.0038 22.1 6.1 25 188-212 26-50 (80)
103 PF12240 Angiomotin_C: Angiomo 32.7 98 0.0021 29.7 5.4 33 172-204 57-89 (205)
104 PRK14473 F0F1 ATP synthase sub 32.7 3.5E+02 0.0076 23.9 10.1 119 177-310 33-152 (164)
105 PRK09039 hypothetical protein; 32.7 3.3E+02 0.0071 27.6 9.5 11 280-290 243-253 (343)
106 PRK00846 hypothetical protein; 32.5 2.8E+02 0.0061 22.7 8.5 51 174-224 8-58 (77)
107 KOG1853 LIS1-interacting prote 32.3 5.2E+02 0.011 26.1 10.5 66 182-247 48-129 (333)
108 PF06698 DUF1192: Protein of u 32.0 1.9E+02 0.0041 22.6 6.0 27 169-195 18-44 (59)
109 TIGR02169 SMC_prok_A chromosom 31.8 6.9E+02 0.015 28.2 12.8 21 270-290 1018-1038(1164)
110 KOG4348 Adaptor protein CMS/SE 31.7 2E+02 0.0043 31.0 7.9 57 170-226 567-623 (627)
111 KOG4196 bZIP transcription fac 31.6 2E+02 0.0043 26.0 6.8 22 194-215 89-110 (135)
112 PRK07352 F0F1 ATP synthase sub 31.6 3.8E+02 0.0083 24.0 10.7 38 202-239 106-143 (174)
113 PRK14162 heat shock protein Gr 31.5 4.5E+02 0.0098 24.8 9.9 26 195-220 66-91 (194)
114 cd07596 BAR_SNX The Bin/Amphip 31.3 3.7E+02 0.008 23.8 8.9 41 188-228 147-187 (218)
115 PRK13455 F0F1 ATP synthase sub 31.3 4E+02 0.0086 24.1 10.5 119 177-310 52-171 (184)
116 COG1322 Predicted nuclease of 31.0 6.8E+02 0.015 26.7 13.6 68 178-245 76-143 (448)
117 COG3883 Uncharacterized protei 30.7 3.6E+02 0.0077 26.9 9.1 52 175-226 55-106 (265)
118 PF07798 DUF1640: Protein of u 30.6 4.1E+02 0.0089 24.1 9.3 34 193-226 73-106 (177)
119 COG1196 Smc Chromosome segrega 30.4 7.3E+02 0.016 29.1 13.0 83 184-290 947-1029(1163)
120 PF04012 PspA_IM30: PspA/IM30 30.2 4.1E+02 0.0088 24.5 9.1 35 181-215 100-134 (221)
121 PRK00888 ftsB cell division pr 30.1 1.8E+02 0.0039 24.6 6.2 31 184-214 32-62 (105)
122 PF04102 SlyX: SlyX; InterPro 30.0 2.7E+02 0.0058 21.7 7.6 44 179-222 4-47 (69)
123 PRK10361 DNA recombination pro 30.0 5E+02 0.011 27.9 10.7 55 190-244 96-151 (475)
124 PF06890 Phage_Mu_Gp45: Bacter 29.9 27 0.00057 32.1 1.2 30 46-75 14-44 (162)
125 PRK14155 heat shock protein Gr 29.9 5E+02 0.011 24.8 9.9 27 195-221 40-66 (208)
126 PF04102 SlyX: SlyX; InterPro 29.6 2.7E+02 0.0059 21.7 6.7 44 175-218 7-50 (69)
127 PRK00295 hypothetical protein; 29.6 2.8E+02 0.006 21.8 7.3 40 180-219 6-45 (68)
128 PF10211 Ax_dynein_light: Axon 29.4 4.4E+02 0.0095 24.5 9.1 33 186-218 127-159 (189)
129 PHA02109 hypothetical protein 29.2 1.6E+02 0.0035 28.1 6.1 41 169-209 177-223 (233)
130 PF03357 Snf7: Snf7; InterPro 28.9 3.2E+02 0.007 23.5 7.8 14 278-291 108-121 (171)
131 PRK10780 periplasmic chaperone 28.3 4.3E+02 0.0093 23.6 11.2 16 280-295 126-141 (165)
132 PF04977 DivIC: Septum formati 28.2 2.2E+02 0.0048 21.5 5.9 22 191-212 22-43 (80)
133 PF05470 eIF-3c_N: Eukaryotic 28.0 3E+02 0.0066 30.2 8.9 86 200-290 46-131 (595)
134 PRK10869 recombination and rep 27.5 3.8E+02 0.0082 28.9 9.4 27 218-244 362-388 (553)
135 PRK04325 hypothetical protein; 27.2 3.2E+02 0.007 21.8 7.3 44 174-217 11-54 (74)
136 PF12777 MT: Microtubule-bindi 27.2 6.4E+02 0.014 25.2 11.1 82 169-250 12-102 (344)
137 cd00632 Prefoldin_beta Prefold 27.1 2.9E+02 0.0062 22.9 6.8 37 182-218 66-102 (105)
138 PRK07353 F0F1 ATP synthase sub 26.8 4E+02 0.0087 22.7 10.6 57 179-235 57-114 (140)
139 PRK14159 heat shock protein Gr 26.8 5.2E+02 0.011 24.0 11.7 56 169-224 24-79 (176)
140 PRK13460 F0F1 ATP synthase sub 26.6 4.7E+02 0.01 23.5 10.8 80 165-244 54-134 (173)
141 PRK13410 molecular chaperone D 26.6 5.1E+02 0.011 28.6 10.4 16 170-185 500-515 (668)
142 PRK14474 F0F1 ATP synthase sub 26.4 6E+02 0.013 24.5 10.5 119 177-310 30-149 (250)
143 PF07106 TBPIP: Tat binding pr 26.3 3.4E+02 0.0074 24.2 7.6 49 170-218 107-163 (169)
144 PRK04406 hypothetical protein; 26.1 3.5E+02 0.0075 21.7 7.3 43 174-216 13-55 (75)
145 cd07679 F-BAR_PACSIN2 The F-BA 25.4 6.7E+02 0.015 24.8 10.0 67 170-240 163-235 (258)
146 smart00338 BRLZ basic region l 25.2 2.9E+02 0.0063 20.8 6.0 36 179-214 26-61 (65)
147 PRK14154 heat shock protein Gr 25.2 6.1E+02 0.013 24.3 10.0 26 195-220 79-104 (208)
148 PRK14158 heat shock protein Gr 25.2 5.9E+02 0.013 24.1 10.2 27 195-221 67-93 (194)
149 PF00170 bZIP_1: bZIP transcri 25.1 3E+02 0.0065 20.7 6.4 31 181-211 28-58 (64)
150 PF08172 CASP_C: CASP C termin 25.1 2.8E+02 0.006 27.1 7.2 42 175-216 89-130 (248)
151 PRK14157 heat shock protein Gr 25.0 6.5E+02 0.014 24.5 11.4 34 190-223 99-132 (227)
152 PF10779 XhlA: Haemolysin XhlA 24.9 3.3E+02 0.0073 21.2 7.8 41 177-217 4-44 (71)
153 PF05529 Bap31: B-cell recepto 24.9 1.2E+02 0.0026 27.6 4.6 30 189-218 157-186 (192)
154 PF01025 GrpE: GrpE; InterPro 24.8 4.7E+02 0.01 22.8 8.6 44 173-219 19-62 (165)
155 PRK00736 hypothetical protein; 24.8 3.4E+02 0.0075 21.3 8.1 42 181-222 7-48 (68)
156 PF05276 SH3BP5: SH3 domain-bi 24.6 6.7E+02 0.014 24.5 10.8 57 191-248 19-75 (239)
157 PF05667 DUF812: Protein of un 24.4 4.3E+02 0.0094 29.0 9.3 38 174-211 330-367 (594)
158 cd00632 Prefoldin_beta Prefold 23.8 2.8E+02 0.006 23.0 6.1 37 176-212 67-103 (105)
159 PRK13729 conjugal transfer pil 23.7 1.8E+02 0.0039 31.2 6.1 12 187-198 77-88 (475)
160 PRK14163 heat shock protein Gr 23.6 6.7E+02 0.015 24.2 11.1 31 194-224 66-96 (214)
161 COG4026 Uncharacterized protei 23.4 4E+02 0.0088 26.4 7.9 18 189-206 159-176 (290)
162 PF13851 GAS: Growth-arrest sp 23.3 6.2E+02 0.013 23.7 12.9 26 269-294 152-177 (201)
163 PRK09039 hypothetical protein; 23.3 7.9E+02 0.017 24.9 10.8 39 178-216 115-153 (343)
164 COG1579 Zn-ribbon protein, pos 23.2 7.2E+02 0.016 24.4 12.9 65 175-239 31-98 (239)
165 PF03938 OmpH: Outer membrane 23.2 4.9E+02 0.011 22.4 11.5 20 277-296 116-135 (158)
166 PF13094 CENP-Q: CENP-Q, a CEN 23.2 5.1E+02 0.011 22.9 8.1 49 177-225 32-80 (160)
167 PRK14142 heat shock protein Gr 23.1 7.1E+02 0.015 24.3 10.1 28 193-220 58-85 (223)
168 PRK00736 hypothetical protein; 23.1 3.7E+02 0.0081 21.1 7.3 45 174-218 7-51 (68)
169 PF06005 DUF904: Protein of un 23.0 4E+02 0.0086 21.3 8.2 53 173-225 19-71 (72)
170 KOG4005 Transcription factor X 23.0 4.2E+02 0.009 26.5 7.9 34 185-218 89-122 (292)
171 PRK02793 phi X174 lysis protei 22.9 3.9E+02 0.0084 21.2 7.4 45 174-218 10-54 (72)
172 PF11932 DUF3450: Protein of u 22.8 6.6E+02 0.014 23.8 11.4 7 238-244 110-116 (251)
173 PF03670 UPF0184: Uncharacteri 22.7 4.5E+02 0.0099 21.9 7.6 46 175-220 29-74 (83)
174 PF05335 DUF745: Protein of un 22.3 3.8E+02 0.0083 25.2 7.3 41 178-218 136-176 (188)
175 PRK02119 hypothetical protein; 22.3 4.1E+02 0.0088 21.2 7.3 44 174-217 11-54 (73)
176 PF08317 Spc7: Spc7 kinetochor 21.9 2.9E+02 0.0062 27.5 6.9 14 234-247 255-268 (325)
177 PF09304 Cortex-I_coil: Cortex 21.8 4.8E+02 0.01 22.7 7.3 47 171-217 29-75 (107)
178 PF10883 DUF2681: Protein of u 21.7 4.1E+02 0.0088 22.3 6.6 35 185-219 29-63 (87)
179 PF05529 Bap31: B-cell recepto 21.7 2E+02 0.0044 26.1 5.4 28 182-209 164-191 (192)
180 PF02388 FemAB: FemAB family; 21.5 5.2E+02 0.011 26.5 8.8 47 179-225 242-294 (406)
181 KOG0288 WD40 repeat protein Ti 21.5 4.7E+02 0.01 27.9 8.4 33 176-208 45-77 (459)
182 PF06156 DUF972: Protein of un 21.5 5.2E+02 0.011 22.1 8.8 41 173-213 2-42 (107)
183 PF07926 TPR_MLP1_2: TPR/MLP1/ 21.4 5.3E+02 0.012 22.2 8.4 23 202-224 89-111 (132)
184 TIGR02894 DNA_bind_RsfA transc 21.4 5.8E+02 0.013 23.7 8.1 38 179-216 111-148 (161)
185 PF00430 ATP-synt_B: ATP synth 21.3 4.8E+02 0.01 21.6 8.9 78 165-242 37-115 (132)
186 PRK00295 hypothetical protein; 21.2 4.1E+02 0.0089 20.8 8.1 45 174-218 7-51 (68)
187 PF11629 Mst1_SARAH: C termina 20.8 3.4E+02 0.0074 20.6 5.4 31 170-203 6-36 (49)
188 KOG0250 DNA repair protein RAD 20.7 1.5E+03 0.032 27.1 13.2 55 170-224 666-720 (1074)
189 PF14662 CCDC155: Coiled-coil 20.7 7.5E+02 0.016 23.7 9.8 36 186-221 95-130 (193)
190 cd04766 HTH_HspR Helix-Turn-He 20.5 2.1E+02 0.0045 22.9 4.6 20 198-217 70-89 (91)
191 TIGR02338 gimC_beta prefoldin, 20.5 4.6E+02 0.0099 21.9 6.9 35 184-218 72-106 (110)
192 PF14584 DUF4446: Protein of u 20.5 3E+02 0.0064 25.0 6.0 54 271-327 64-117 (151)
193 PF05278 PEARLI-4: Arabidopsis 20.4 3.8E+02 0.0083 26.8 7.2 35 187-221 201-235 (269)
194 PF07989 Microtub_assoc: Micro 20.2 3.8E+02 0.0083 21.5 6.0 37 173-209 37-73 (75)
195 PF08317 Spc7: Spc7 kinetochor 20.0 5.7E+02 0.012 25.4 8.5 11 289-299 291-301 (325)
No 1
>PRK14143 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.1e-46 Score=354.89 Aligned_cols=164 Identities=28% Similarity=0.403 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCC
Q 018157 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 257 (360)
Q Consensus 178 ~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~ 257 (360)
.+.+..+++.|+.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.++...
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~----- 140 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPE----- 140 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccc-----
Confidence 344555666788889999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEE
Q 018157 258 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERV 337 (360)
Q Consensus 258 ~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRV 337 (360)
. .....|.+||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|+|++|+|+||+|||||
T Consensus 141 --~------~~~~~l~~Gve~i~k~l~~~L~k~GV~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RV 212 (238)
T PRK14143 141 --G------EEAQALHRSYQGLYKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRV 212 (238)
T ss_pred --c------hhHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCEe
Confidence 1 12367999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEecCCCCccc
Q 018157 338 IRPAEVGVTQAVENDRA 354 (360)
Q Consensus 338 LRPA~VvVsK~~~~~e~ 354 (360)
||||+|+|++++.....
T Consensus 213 LRpA~V~Vsk~~~~~~~ 229 (238)
T PRK14143 213 LRHAMVKVSMGPGPSSP 229 (238)
T ss_pred cccceEEECCCCCCCCC
Confidence 99999999998765544
No 2
>PRK14153 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.3e-46 Score=345.07 Aligned_cols=157 Identities=34% Similarity=0.582 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCC
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 260 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~ 260 (360)
+......|+.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.+.+
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~-------- 106 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESARTA-------- 106 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc--------
Confidence 344556677888999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeee
Q 018157 261 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 340 (360)
Q Consensus 261 d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRP 340 (360)
..+.+|++||+||+++|.++|+++||++|+|+|++|||++|+||+++++++.++|||++|+|+||+|+||||||
T Consensus 107 ------~~~~~l~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRP 180 (194)
T PRK14153 107 ------EDMNSIVEGIEMVSKQFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRP 180 (194)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcEeCCEEeeC
Confidence 12578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCC
Q 018157 341 AEVGVTQAVEN 351 (360)
Q Consensus 341 A~VvVsK~~~~ 351 (360)
|+|+|+++++.
T Consensus 181 A~V~Vak~~~e 191 (194)
T PRK14153 181 AMVSVARNPDE 191 (194)
T ss_pred cEEEECCCCcc
Confidence 99999997654
No 3
>PRK14148 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.3e-46 Score=343.66 Aligned_cols=156 Identities=35% Similarity=0.557 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCC
Q 018157 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDP 258 (360)
Q Consensus 179 k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~ 258 (360)
+.+..+++.++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+....
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~------ 113 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKL------ 113 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc------
Confidence 33555666788899999999999999999999999999999999999999999999999999999999864320
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEe
Q 018157 259 SNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVI 338 (360)
Q Consensus 259 s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVL 338 (360)
....+|++||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|+|++|+|+||+||||||
T Consensus 114 --------~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVL 185 (195)
T PRK14148 114 --------EEAIAMKEGIELTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIV 185 (195)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEee
Confidence 124689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEecC
Q 018157 339 RPAEVGVTQA 348 (360)
Q Consensus 339 RPA~VvVsK~ 348 (360)
|||+|+|++.
T Consensus 186 RpA~V~Vak~ 195 (195)
T PRK14148 186 RAAKVVIVKN 195 (195)
T ss_pred eccEEEeCCC
Confidence 9999999973
No 4
>PRK14161 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.3e-46 Score=339.48 Aligned_cols=160 Identities=32% Similarity=0.574 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCC
Q 018157 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 257 (360)
Q Consensus 178 ~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~ 257 (360)
.+.++...++++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.+.+
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~----- 92 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPAN----- 92 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccc-----
Confidence 345666777888999999999999999999999999999999999999999999999999999999999875421
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCE
Q 018157 258 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYER 336 (360)
Q Consensus 258 ~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~-vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dR 336 (360)
. ...+.++++||+||+++|.++|+++||++|++ +|++|||++||||+++++++.++|+|++|+|+||+||||
T Consensus 93 --~-----~~~~~~~~~Gv~mi~k~l~~vL~~~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~l~dR 165 (178)
T PRK14161 93 --S-----DVEVTNIIAGVQMTKDELDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDR 165 (178)
T ss_pred --c-----chhHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcEeCCE
Confidence 0 12246899999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred EeeeeEEEEecCC
Q 018157 337 VIRPAEVGVTQAV 349 (360)
Q Consensus 337 VLRPA~VvVsK~~ 349 (360)
|||||+|+|++++
T Consensus 166 VLRpA~V~Vak~~ 178 (178)
T PRK14161 166 LLRPATVQVVKKP 178 (178)
T ss_pred eecCceEEeCCCC
Confidence 9999999999864
No 5
>PRK14141 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.2e-46 Score=345.06 Aligned_cols=157 Identities=41% Similarity=0.677 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCch
Q 018157 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 266 (360)
Q Consensus 187 ~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~ 266 (360)
.|+.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|+|+||+++.+.. .+ ...+
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~-------~~-~~~~ 110 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAE-------AR-AAAD 110 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccc-------cc-cccc
Confidence 345567888999999999999999999999999999999999999999999999999999976421 00 0112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEEe
Q 018157 267 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 346 (360)
Q Consensus 267 ~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvVs 346 (360)
+.+++|++||+||+++|.++|+++||++|+++|++|||++||||++++++++++|+|++|+|+||+|||||||||+|+|+
T Consensus 111 ~~~~~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vs 190 (209)
T PRK14141 111 AGLKALIEGVEMTERAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVGVA 190 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeecccEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 018157 347 QAVEN 351 (360)
Q Consensus 347 K~~~~ 351 (360)
++++.
T Consensus 191 k~~~~ 195 (209)
T PRK14141 191 KGGPK 195 (209)
T ss_pred CCCCC
Confidence 96643
No 6
>PRK14147 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.8e-46 Score=335.69 Aligned_cols=146 Identities=33% Similarity=0.508 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCch
Q 018157 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 266 (360)
Q Consensus 187 ~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~ 266 (360)
.|+.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+...
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~--------------- 90 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGT--------------- 90 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc---------------
Confidence 35667788999999999999999999999999999999999999999999999999999975421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEEe
Q 018157 267 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 346 (360)
Q Consensus 267 ~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvVs 346 (360)
...+|++||+||+++|.++|+++||++|+++|++|||++||||+++++++.++|+|++|+|+||+|+|||||||+|+|+
T Consensus 91 -~~~~l~~Gv~mi~k~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~RvLRpA~V~Va 169 (172)
T PRK14147 91 -EPSPLRDGLELTYKQLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRPALVVVA 169 (172)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeccCceEEeC
Confidence 1357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 018157 347 QA 348 (360)
Q Consensus 347 K~ 348 (360)
+.
T Consensus 170 k~ 171 (172)
T PRK14147 170 KQ 171 (172)
T ss_pred CC
Confidence 75
No 7
>PRK14151 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7e-46 Score=335.77 Aligned_cols=149 Identities=34% Similarity=0.574 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCc
Q 018157 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 265 (360)
Q Consensus 186 e~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a 265 (360)
+.++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+++... .
T Consensus 27 ~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~--------~----- 93 (176)
T PRK14151 27 ARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSA--------D----- 93 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--------c-----
Confidence 345667788999999999999999999999999999999999999999999999999999986431 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEE
Q 018157 266 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 345 (360)
Q Consensus 266 ~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvV 345 (360)
+..+++|++||+||+++|.++|+++||++|+++|++|||++||||+++++++.++|+|++|+|+||+|||||||||+|+|
T Consensus 94 ~~~~~~~~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~l~dRvLRpA~V~V 173 (176)
T PRK14151 94 DEAIKPMREGVELTLKMFQDTLKRYQLEAVDPHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVV 173 (176)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcEECCEEecCcEEEe
Confidence 12357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 018157 346 TQ 347 (360)
Q Consensus 346 sK 347 (360)
++
T Consensus 174 ak 175 (176)
T PRK14151 174 SK 175 (176)
T ss_pred cC
Confidence 97
No 8
>PRK14155 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.1e-46 Score=342.67 Aligned_cols=154 Identities=42% Similarity=0.661 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCch
Q 018157 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 266 (360)
Q Consensus 187 ~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~ 266 (360)
.|+.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.... + .+
T Consensus 21 ~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~------~-----~~ 89 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKD------S-----AD 89 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhccccc------c-----cc
Confidence 456677889999999999999999999999999999999999999999999999999999876421 0 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEE
Q 018157 267 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 345 (360)
Q Consensus 267 ~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~-vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvV 345 (360)
+.+++|++||+||+++|.++|+++||++|+| +|++|||++||||+++++++.++|+|++|+|+||+|+|||||||+|+|
T Consensus 90 ~~~~~i~~Gvemi~k~~~~~L~k~GV~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~V 169 (208)
T PRK14155 90 PAVKNFIIGVEMTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAV 169 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCceecCCCCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeEeCCEeeccceEEE
Confidence 3467899999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 018157 346 TQAVEN 351 (360)
Q Consensus 346 sK~~~~ 351 (360)
++++..
T Consensus 170 ak~~~~ 175 (208)
T PRK14155 170 AAKGST 175 (208)
T ss_pred CCCCCc
Confidence 996543
No 9
>PRK14140 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.1e-45 Score=338.25 Aligned_cols=154 Identities=38% Similarity=0.552 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCC
Q 018157 180 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPS 259 (360)
Q Consensus 180 ~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s 259 (360)
++.+++..++.+++++++++++|+|++|||+|||||+++|++.+++||+++|+++||||+|||+||+.+.+.
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~-------- 109 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEAD-------- 109 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------
Confidence 345555667788899999999999999999999999999999999999999999999999999999986431
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEee
Q 018157 260 NDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIR 339 (360)
Q Consensus 260 ~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLR 339 (360)
++.+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++|+|+||+|||||||
T Consensus 110 ------~~~~~~i~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLR 183 (191)
T PRK14140 110 ------DEQTKSLLKGVEMVHRQLLEALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIR 183 (191)
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeEeCCEEec
Confidence 12357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEec
Q 018157 340 PAEVGVTQ 347 (360)
Q Consensus 340 PA~VvVsK 347 (360)
||+|+|++
T Consensus 184 pA~V~Vak 191 (191)
T PRK14140 184 PSMVKVNQ 191 (191)
T ss_pred CcEEEeCC
Confidence 99999985
No 10
>PRK14158 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.2e-45 Score=338.67 Aligned_cols=152 Identities=38% Similarity=0.555 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCC
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 260 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~ 260 (360)
+..+++.++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+...
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~--------- 112 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADE--------- 112 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCc---------
Confidence 45556667888899999999999999999999999999999999999999999999999999999986421
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEee
Q 018157 261 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIR 339 (360)
Q Consensus 261 d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~-vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLR 339 (360)
..+.+|++||+||+++|.++|+++||++|++ +|++|||++||||+++++++.++|+|++|+|+||+|+|||||
T Consensus 113 ------~~~~~i~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLR 186 (194)
T PRK14158 113 ------ESMSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNERLLR 186 (194)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcEeCCEEee
Confidence 1247899999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred eeEEEEec
Q 018157 340 PAEVGVTQ 347 (360)
Q Consensus 340 PA~VvVsK 347 (360)
||+|+|+|
T Consensus 187 pA~V~VsK 194 (194)
T PRK14158 187 PAMVSVAT 194 (194)
T ss_pred cceeEeCC
Confidence 99999986
No 11
>PRK14145 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.6e-45 Score=338.34 Aligned_cols=150 Identities=32% Similarity=0.487 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCC
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 260 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~ 260 (360)
+..+.+.+..+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+..
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~~---------- 116 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASSG---------- 116 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccc----------
Confidence 3445556778889999999999999999999999999999999999999999999999999999997521
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeee
Q 018157 261 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 340 (360)
Q Consensus 261 d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRP 340 (360)
....|++||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|||++|+|+||+|+||||||
T Consensus 117 -------~~~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRP 189 (196)
T PRK14145 117 -------DYNSLKEGIELIYRQFKKILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRP 189 (196)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCchhhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeecc
Confidence 1357999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEec
Q 018157 341 AEVGVTQ 347 (360)
Q Consensus 341 A~VvVsK 347 (360)
|+|+|++
T Consensus 190 A~V~Vak 196 (196)
T PRK14145 190 SLVKVAK 196 (196)
T ss_pred ceEEeCC
Confidence 9999985
No 12
>PRK14163 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.6e-45 Score=342.11 Aligned_cols=150 Identities=28% Similarity=0.424 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCC
Q 018157 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 263 (360)
Q Consensus 184 ~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~ 263 (360)
+.+.|..+++++++++|+|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.
T Consensus 45 l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~-------------- 110 (214)
T PRK14163 45 LTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHG-------------- 110 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhch--------------
Confidence 344567788899999999999999999999999999999999999999999999999999998731
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEE
Q 018157 264 GAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEV 343 (360)
Q Consensus 264 ~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~V 343 (360)
.|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||
T Consensus 111 -------~l~~Gv~mi~k~l~~~L~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRPA~V 183 (214)
T PRK14163 111 -------ELVGGFKSVAESLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPARV 183 (214)
T ss_pred -------hHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcCcCCEeccCceE
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccc
Q 018157 344 GVTQAVENDRA 354 (360)
Q Consensus 344 vVsK~~~~~e~ 354 (360)
+|+++++..++
T Consensus 184 ~Vsk~~~~~~~ 194 (214)
T PRK14163 184 AVAEPQPGAQT 194 (214)
T ss_pred EECCCCCCCCC
Confidence 99997554443
No 13
>PRK14162 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.3e-45 Score=336.90 Aligned_cols=149 Identities=34% Similarity=0.479 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCC
Q 018157 185 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 264 (360)
Q Consensus 185 Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~ 264 (360)
+..++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+...
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~------------- 111 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKAD------------- 111 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------
Confidence 3446667889999999999999999999999999999999999999999999999999999986432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCC-CCCCCceEEEeeccceeCCEEeeeeEE
Q 018157 265 AVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDN-SKPPGTVAHVLKSGYTLYERVIRPAEV 343 (360)
Q Consensus 265 a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~-e~~~gtVveVvQkGY~L~dRVLRPA~V 343 (360)
+..+.+|++||+||+++|.++|.++||++|+++|++|||++|+||++++++ +.++|+|++|+|+||+|||||||||+|
T Consensus 112 -~~~~~~l~~Gvemi~k~l~~vL~~~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V 190 (194)
T PRK14162 112 -DEAAKQLKKGVQMTLDHLVKALKDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMV 190 (194)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCCEeeecceE
Confidence 123478999999999999999999999999999999999999999999974 689999999999999999999999999
Q ss_pred EEec
Q 018157 344 GVTQ 347 (360)
Q Consensus 344 vVsK 347 (360)
+|++
T Consensus 191 ~Vak 194 (194)
T PRK14162 191 VVAQ 194 (194)
T ss_pred EeCC
Confidence 9985
No 14
>PRK14160 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.7e-45 Score=340.01 Aligned_cols=158 Identities=32% Similarity=0.463 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhh
Q 018157 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE 251 (360)
Q Consensus 172 ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e 251 (360)
....++.+.+..+++.++.+++++++++++|+|++|||+|||||+.||++.+++||+++|+++||||+|||+||+.+..
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~~- 132 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVEG- 132 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc-
Confidence 3445667778888888999999999999999999999999999999999999999999999999999999999997521
Q ss_pred hcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccc
Q 018157 252 NFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGY 331 (360)
Q Consensus 252 ~~ski~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY 331 (360)
....|++||+||+++|.++|+++||++|++.| +|||++|+||++++++++++|+|++|+|+||
T Consensus 133 ----------------~~~~l~~Gv~mi~kql~~vL~k~GVe~I~~~G-~FDP~~HEAv~~~~~~e~~~gtVveV~qkGY 195 (211)
T PRK14160 133 ----------------SVEDLKKGIEMTVKQFKTSLEKLGVEEISTEG-EFDPNLHNAVMHVEDENYGENEIVEVFQKGY 195 (211)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhceeeeeCCCCCCcCeEEEEeeCCc
Confidence 12579999999999999999999999999999 8999999999999999999999999999999
Q ss_pred eeCCEEeeeeEEEEec
Q 018157 332 TLYERVIRPAEVGVTQ 347 (360)
Q Consensus 332 ~L~dRVLRPA~VvVsK 347 (360)
+|||||||||+|+|++
T Consensus 196 ~l~dRVLRpA~V~Va~ 211 (211)
T PRK14160 196 KRGDKVIRYSMVKVAN 211 (211)
T ss_pred EeCCEeeecceEEeCC
Confidence 9999999999999984
No 15
>PRK14139 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.5e-45 Score=334.48 Aligned_cols=146 Identities=41% Similarity=0.607 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCc
Q 018157 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 265 (360)
Q Consensus 186 e~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a 265 (360)
+.|+.+++++++++|+|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+..
T Consensus 39 ~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~--------------- 103 (185)
T PRK14139 39 AELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADES--------------- 103 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc---------------
Confidence 34566788999999999999999999999999999999999999999999999999999996431
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEE
Q 018157 266 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 345 (360)
Q Consensus 266 ~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvV 345 (360)
..+.+|++||+||+++|.++|+++||++|+++|++|||++||||+++++ +.++|+|++|+|+||+|||||||||+|+|
T Consensus 104 -~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~-~~~~gtVi~V~qkGY~l~dRVLRPA~V~V 181 (185)
T PRK14139 104 -GDLEKLREGVELTLKQLTSAFEKGRVVEINPVGEKFDPHQHQAISMVPA-EQEPNTVVAVLQKGYTIADRVLRPALVTV 181 (185)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHCCCceeCCCCCCCChHHhheeeeecC-CCCcCEEEEEeeCCcEeCCEeccCceEEe
Confidence 1246799999999999999999999999999999999999999999998 67899999999999999999999999999
Q ss_pred ecC
Q 018157 346 TQA 348 (360)
Q Consensus 346 sK~ 348 (360)
+++
T Consensus 182 ak~ 184 (185)
T PRK14139 182 AAP 184 (185)
T ss_pred CCC
Confidence 984
No 16
>PRK14150 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.3e-45 Score=335.38 Aligned_cols=151 Identities=41% Similarity=0.634 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCC
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 260 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~ 260 (360)
+.++++.+..+++ +++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+... .
T Consensus 43 i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~--------~ 111 (193)
T PRK14150 43 IAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADK--------E 111 (193)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccc--------c
Confidence 3444444444333 6799999999999999999999999999999999999999999999999975421 0
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeee
Q 018157 261 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 340 (360)
Q Consensus 261 d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRP 340 (360)
+..+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+|+||+||||||||
T Consensus 112 -----~~~~~~~~~Gv~mi~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~l~drvLRp 186 (193)
T PRK14150 112 -----NEALKALIEGVELTLKSLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLLRP 186 (193)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeEeCCEEecc
Confidence 123578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEec
Q 018157 341 AEVGVTQ 347 (360)
Q Consensus 341 A~VvVsK 347 (360)
|+|+|++
T Consensus 187 A~V~Vsk 193 (193)
T PRK14150 187 AMVMVSK 193 (193)
T ss_pred eEEEeCC
Confidence 9999985
No 17
>PRK14146 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.8e-45 Score=339.98 Aligned_cols=152 Identities=30% Similarity=0.439 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCC
Q 018157 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 263 (360)
Q Consensus 184 ~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~ 263 (360)
++..+..+++++++++++|+|++|||+|||||+.+|++.+++||+++|+++||||+|||+||+.+...
T Consensus 59 l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~------------ 126 (215)
T PRK14146 59 LQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQ------------ 126 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc------------
Confidence 34456778889999999999999999999999999999999999999999999999999999986431
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCC----EEee
Q 018157 264 GAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYE----RVIR 339 (360)
Q Consensus 264 ~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~d----RVLR 339 (360)
++...+|++||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|+|++|+|+||+|+| ||||
T Consensus 127 --~~~~~~l~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~r~~~RvLR 204 (215)
T PRK14146 127 --SEELKPFVEGVKMILKEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYYKENEDKFTLR 204 (215)
T ss_pred --cchhhHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeEeCCccCCeecc
Confidence 1234789999999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred eeEEEEecCC
Q 018157 340 PAEVGVTQAV 349 (360)
Q Consensus 340 PA~VvVsK~~ 349 (360)
||+|+|++++
T Consensus 205 pA~V~Vak~~ 214 (215)
T PRK14146 205 PARVRIGKPK 214 (215)
T ss_pred CceEEeCCCC
Confidence 9999999854
No 18
>PRK14144 heat shock protein GrpE; Provisional
Probab=100.00 E-value=5.8e-45 Score=335.25 Aligned_cols=162 Identities=36% Similarity=0.585 Sum_probs=144.7
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhc
Q 018157 168 SEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 247 (360)
Q Consensus 168 ~e~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~ 247 (360)
.+..+...++. .+++.++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.
T Consensus 38 ~~~~~~~~~~~----~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~ 113 (199)
T PRK14144 38 QEPALGHPSYT----ALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQ 113 (199)
T ss_pred ccCCCCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Confidence 34555555543 33445677889999999999999999999999999999999999999999999999999999998
Q ss_pred chhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEe
Q 018157 248 VVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVL 327 (360)
Q Consensus 248 ~~~e~~ski~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVv 327 (360)
+... .+ ..+|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+
T Consensus 114 ~~~~--------~~-------~~~i~~Gv~mi~k~l~~~L~k~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~ 178 (199)
T PRK14144 114 LADK--------NS-------DPSMHEGLELTMKLFLDALQKFDVEQIDPLGQTFDPQQHEAMSMQPAPGAPPNSVITVF 178 (199)
T ss_pred cccc--------cc-------hhHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEe
Confidence 6532 00 14699999999999999999999999999999999999999999999999999999999
Q ss_pred eccceeCCEEeeeeEEEEecC
Q 018157 328 KSGYTLYERVIRPAEVGVTQA 348 (360)
Q Consensus 328 QkGY~L~dRVLRPA~VvVsK~ 348 (360)
|+||+|+|||||||+|+|+++
T Consensus 179 qkGY~l~dRVLRpA~V~Vskk 199 (199)
T PRK14144 179 QKGYKLSDRVIRPARVIVSTK 199 (199)
T ss_pred eCCcEECCEEecccEEEecCC
Confidence 999999999999999999874
No 19
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-45 Score=334.50 Aligned_cols=151 Identities=44% Similarity=0.690 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCc
Q 018157 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 265 (360)
Q Consensus 186 e~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a 265 (360)
.++..++.++++++++|+|++|||+|||||+++|++.+++||+++|+.+||||+|||+||+...... .+
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~-------~d---- 111 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDD-------KD---- 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cc----
Confidence 4466778888899999999999999999999999999999999999999999999999999875431 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEE
Q 018157 266 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 345 (360)
Q Consensus 266 ~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvV 345 (360)
+. ++|++||+||+++|.++|.++||++|++.|++|||++|+||++++++++++|||++|+|+||+|||||||||||+|
T Consensus 112 -~~-~~l~~Gvem~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRVLRpA~V~V 189 (193)
T COG0576 112 -PE-KALLEGVEMTLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLRPAMVKV 189 (193)
T ss_pred -hH-HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhheeeecCCCCCCCeEEEEeecCeeeCCEeccceEEEE
Confidence 12 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 018157 346 TQAV 349 (360)
Q Consensus 346 sK~~ 349 (360)
++++
T Consensus 190 ak~~ 193 (193)
T COG0576 190 AKKE 193 (193)
T ss_pred ecCC
Confidence 9864
No 20
>PRK14159 heat shock protein GrpE; Provisional
Probab=100.00 E-value=5.1e-45 Score=330.26 Aligned_cols=145 Identities=34% Similarity=0.522 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCchh
Q 018157 188 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 267 (360)
Q Consensus 188 Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~~ 267 (360)
++.+++++++++++|+|++|||+|||||+.+|++++++||+++|+++||||+|||+||+.+...+ .
T Consensus 32 i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~--------------~ 97 (176)
T PRK14159 32 QNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECHD--------------E 97 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc--------------c
Confidence 55677888999999999999999999999999999999999999999999999999999864321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEEec
Q 018157 268 LLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQ 347 (360)
Q Consensus 268 ~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvVsK 347 (360)
...+|++||+||+++|.++|+++||++|++.| +|||++|+||+++++++.++|+|++|+|+||+|||||||||+|+|++
T Consensus 98 ~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G-~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~Vak 176 (176)
T PRK14159 98 ISLKIKEGVQNTLDLFLKKLEKHGVALIKEEK-EFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVSVAK 176 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCcCEecCCCC-CCChHHhhhhheeCCCCCCcCeEEEEeeCCcEeCCEeeecceeEeCC
Confidence 24679999999999999999999999999999 69999999999999999999999999999999999999999999985
No 21
>PRK14154 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.3e-44 Score=334.80 Aligned_cols=148 Identities=32% Similarity=0.476 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCc
Q 018157 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 265 (360)
Q Consensus 186 e~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a 265 (360)
+.|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... .
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~-------------~ 125 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPAS-------------E 125 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------c
Confidence 345667788999999999999999999999999999999999999999999999999999986421 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEE
Q 018157 266 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVG 344 (360)
Q Consensus 266 ~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~-vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~Vv 344 (360)
++.+++|++||+||+++|.++|+++||++|++ +|++|||++||||+++++++.++|||++|+|+||+|+|||||||+|+
T Consensus 126 ~~~~~~l~eGvemi~k~l~~vL~k~GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~l~dRVLRPA~V~ 205 (208)
T PRK14154 126 DPQVKSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVI 205 (208)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEEecceEEE
Confidence 13457899999999999999999999999998 69999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 018157 345 VT 346 (360)
Q Consensus 345 Vs 346 (360)
|+
T Consensus 206 Va 207 (208)
T PRK14154 206 VA 207 (208)
T ss_pred eC
Confidence 97
No 22
>PRK10325 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.5e-44 Score=331.97 Aligned_cols=139 Identities=40% Similarity=0.619 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCchhhHHHHHHHHH
Q 018157 198 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVE 277 (360)
Q Consensus 198 lkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~~~lksl~eGVe 277 (360)
++|+|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+... . ...+++|++||+
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~--------~-----~~~~~~l~~Gv~ 124 (197)
T PRK10325 58 ERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADK--------A-----NPDMSAMVEGIE 124 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--------c-----chhHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999986431 0 013578999999
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEEecCC
Q 018157 278 MTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQAV 349 (360)
Q Consensus 278 MI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvVsK~~ 349 (360)
||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+|+||+|+|||||||+|+|++++
T Consensus 125 m~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk~~ 196 (197)
T PRK10325 125 LTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAK 196 (197)
T ss_pred HHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeccCceEEeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854
No 23
>PRK14149 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.9e-44 Score=330.05 Aligned_cols=146 Identities=34% Similarity=0.497 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCchh
Q 018157 188 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 267 (360)
Q Consensus 188 Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~~ 267 (360)
|+.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+...+ .
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~--------------~ 110 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAEV--------------D 110 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc--------------c
Confidence 55567888899999999999999999999999999999999999999999999999999865321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEEec
Q 018157 268 LLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQ 347 (360)
Q Consensus 268 ~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvVsK 347 (360)
...+|++||+||+++|.++|+++||++|++.| +|||++|+||+++++++.++|||++|+|+||+|+|||||||+|+|++
T Consensus 111 ~~~~l~~Gv~mi~k~l~~vL~k~GV~~I~~~G-~FDP~~HEAv~~v~~~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Vak 189 (191)
T PRK14149 111 KESALTKGLELTMEKLHEVLARHGIEGIECLE-EFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAK 189 (191)
T ss_pred chHHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhheeeeecCCCCCcCEEEEEeeCCcEeCCEEeeccEEEeCC
Confidence 24679999999999999999999999999999 59999999999999999999999999999999999999999999998
Q ss_pred C
Q 018157 348 A 348 (360)
Q Consensus 348 ~ 348 (360)
+
T Consensus 190 ~ 190 (191)
T PRK14149 190 N 190 (191)
T ss_pred C
Confidence 3
No 24
>PRK14157 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.1e-43 Score=330.16 Aligned_cols=142 Identities=30% Similarity=0.487 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCc
Q 018157 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 265 (360)
Q Consensus 186 e~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a 265 (360)
..|..+++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.
T Consensus 84 ~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~~---------------- 147 (227)
T PRK14157 84 TPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREHS---------------- 147 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhcc----------------
Confidence 3455677889999999999999999999999999999999999999999999999999999743
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEE
Q 018157 266 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 345 (360)
Q Consensus 266 ~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvV 345 (360)
.+.+||+||+++|.++|+++||++|+++|++|||++||||++++++++++|||++|+|+||+|||||||||+|+|
T Consensus 148 -----~~~~~~~~i~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~l~dRVLRPA~V~V 222 (227)
T PRK14157 148 -----EMDDSFKAVAAKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVVV 222 (227)
T ss_pred -----ccchHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCcCEEEEEeeCCceeCCEeccCceEEe
Confidence 134688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 018157 346 TQA 348 (360)
Q Consensus 346 sK~ 348 (360)
+++
T Consensus 223 ak~ 225 (227)
T PRK14157 223 ASP 225 (227)
T ss_pred CCC
Confidence 983
No 25
>PRK14156 heat shock protein GrpE; Provisional
Probab=100.00 E-value=6.3e-43 Score=316.86 Aligned_cols=157 Identities=34% Similarity=0.497 Sum_probs=139.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchh
Q 018157 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 250 (360)
Q Consensus 171 ~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~ 250 (360)
..+.++++...+. ...|+.+++++++++++|+|++|||+|||||+++|++++++||.++|+++||||+|||+||+.+..
T Consensus 20 ~~~~~~~~~~~~~-~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~ 98 (177)
T PRK14156 20 EETVEEVVEETPE-KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEG 98 (177)
T ss_pred HHHHHHHHhhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCcc
Confidence 3455665554433 455778899999999999999999999999999999999999999999999999999999997532
Q ss_pred hhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCC-CCCCCceEEEeec
Q 018157 251 ENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDN-SKPPGTVAHVLKS 329 (360)
Q Consensus 251 e~~ski~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~-e~~~gtVveVvQk 329 (360)
. ..+|++||+||+++|.++|+++||++|++. +|||++|+||++++++ ++++|+|++|+|+
T Consensus 99 ~-----------------~~~l~~Gv~mi~k~l~~~L~~~GV~~i~~~--~FDP~~HEAv~~~~~~~~~~~gtVv~V~qk 159 (177)
T PRK14156 99 L-----------------TDDVKKGLEMVQESLIQALKEEGVEEVAVD--SFDHNLHMAVQTLPADDEHPADSIAQVFQK 159 (177)
T ss_pred c-----------------chhHHHHHHHHHHHHHHHHHHCCCeecCCC--CCChhHhhcceeecCCCCCCcCEEEEEeeC
Confidence 1 136899999999999999999999999985 9999999999999864 5899999999999
Q ss_pred cceeCCEEeeeeEEEEec
Q 018157 330 GYTLYERVIRPAEVGVTQ 347 (360)
Q Consensus 330 GY~L~dRVLRPA~VvVsK 347 (360)
||+|||||||||+|+|++
T Consensus 160 GY~l~dRVLRpA~V~Va~ 177 (177)
T PRK14156 160 GYKLHERLLRPAMVVVYN 177 (177)
T ss_pred CcEeCCEEeecceeEeCC
Confidence 999999999999999984
No 26
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-42 Score=323.75 Aligned_cols=163 Identities=55% Similarity=0.793 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCC
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 260 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~ 260 (360)
++++++.++. ++++.+|+|+|+|..||++|+|+|++|..++++.||+++|++|||.|.|+|++|.+++++.+++.
T Consensus 73 ~~~l~~~~k~-~~e~~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~~~~---- 147 (236)
T KOG3003|consen 73 KALLEKVLKL-EKEEQELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEESEKE---- 147 (236)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccc----
Confidence 3444444444 45559999999999999999999999999999999999999999999999999999998753332
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeee
Q 018157 261 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 340 (360)
Q Consensus 261 d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRP 340 (360)
..++.++.+++|+.||+++|.++|.+||+++++|+|++||||.||||+++|+..+++|||..|.+.||+||||+|||
T Consensus 148 ---d~~~~L~~l~eGl~mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k~Gy~L~~R~IRP 224 (236)
T KOG3003|consen 148 ---DQKKDLKDLFEGLSMTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTKKGYKLNGRVIRP 224 (236)
T ss_pred ---ccchHHHHHHhHHHHHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEeccCcccCCeeech
Confidence 23467899999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred eEEEEecCCCC
Q 018157 341 AEVGVTQAVEN 351 (360)
Q Consensus 341 A~VvVsK~~~~ 351 (360)
|+|+|++++++
T Consensus 225 A~VgV~~~~~~ 235 (236)
T KOG3003|consen 225 AMVGVVKGGEN 235 (236)
T ss_pred hheeeecCCCC
Confidence 99999998765
No 27
>PRK14142 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.4e-41 Score=316.93 Aligned_cols=144 Identities=26% Similarity=0.401 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCchhhHHH
Q 018157 192 NEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKS 271 (360)
Q Consensus 192 ~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~~~lks 271 (360)
.+++++|+++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... +
T Consensus 46 ~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLERAL~~~~~---------~---------- 106 (223)
T PRK14142 46 EDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDL---------E---------- 106 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHhcccc---------c----------
Confidence 456778899999999999999999999999999999999999999999999999975321 0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCC-CCceEEEeeccceeCCEEeeeeEEEEecCCC
Q 018157 272 LLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKP-PGTVAHVLKSGYTLYERVIRPAEVGVTQAVE 350 (360)
Q Consensus 272 l~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~-~gtVveVvQkGY~L~dRVLRPA~VvVsK~~~ 350 (360)
..+|+||+++|.++|+++||++|+++|++|||++||||+++++++.+ .|+|++|+|+||+|+|||||||+|+|++.+.
T Consensus 107 -~~~v~~I~kqL~~iLek~GVe~I~~~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk~~~ 185 (223)
T PRK14142 107 -SGPLKSVADKLDSALTGLGLVAFGAEGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVDTVV 185 (223)
T ss_pred -cHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCCEeccCceEEECCCCC
Confidence 13578999999999999999999999999999999999999988764 6799999999999999999999999999876
Q ss_pred Ccccc
Q 018157 351 NDRAE 355 (360)
Q Consensus 351 ~~e~~ 355 (360)
...++
T Consensus 186 ~~~~~ 190 (223)
T PRK14142 186 VDAAE 190 (223)
T ss_pred CCccc
Confidence 54443
No 28
>PRK14164 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8.9e-41 Score=311.24 Aligned_cols=139 Identities=28% Similarity=0.385 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCch
Q 018157 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 266 (360)
Q Consensus 187 ~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~ 266 (360)
.+..+++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+..
T Consensus 78 ~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~---------------- 141 (218)
T PRK14164 78 EASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDLAEQHGD---------------- 141 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc----------------
Confidence 3555678899999999999999999999999999999999999999999999999999997531
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEE
Q 018157 267 PLLKSLLEG-VEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 345 (360)
Q Consensus 267 ~~lksl~eG-VeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvV 345 (360)
+.+| |+||+++|.++|+++||++|+++|++|||++||||+++++++ .++|++|+|+||+|||||||||+|+|
T Consensus 142 -----~~~g~l~~i~~~l~~vL~k~Gve~I~~~Ge~FDP~~HEAV~~~~~~~--~~~V~~V~qkGY~l~dRVLRPA~V~V 214 (218)
T PRK14164 142 -----LNEGPLKAFSDKLTNVLAGLKVEKFGEEGDAFDPEIHEAVQDLSSGD--EKVLGTVLRKGYRMGDRVLRTAMVII 214 (218)
T ss_pred -----ccccHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeecCCC--CCEeeEEeeCCcEECCEeccCceEEe
Confidence 1233 789999999999999999999999999999999999998764 58999999999999999999999999
Q ss_pred ecC
Q 018157 346 TQA 348 (360)
Q Consensus 346 sK~ 348 (360)
+++
T Consensus 215 ak~ 217 (218)
T PRK14164 215 ADP 217 (218)
T ss_pred CCC
Confidence 984
No 29
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=100.00 E-value=1.6e-39 Score=281.04 Aligned_cols=136 Identities=53% Similarity=0.806 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCchhhHHHHHHH
Q 018157 196 KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEG 275 (360)
Q Consensus 196 eelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~~~lksl~eG 275 (360)
++++++|+|++|||+|||+|+.+|+++++++|+++|+++||||+|+|++|+++...+ +.++.+.+|
T Consensus 2 ~~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~le~a~~~~~~~--------------~~~~~~~~g 67 (137)
T cd00446 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKKE--------------EELKNLVEG 67 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------------chHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999865320 235789999
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeeeEEEE
Q 018157 276 VEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 345 (360)
Q Consensus 276 VeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA~VvV 345 (360)
|+||+++|.++|.++||++|++.|++|||++|+||+++++++.++|+|++|+++||+++|||||||+|+|
T Consensus 68 ~~~i~~~l~~~L~~~Gv~~i~~~g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V 137 (137)
T cd00446 68 VEMTLKQLLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRVLRPAMVVV 137 (137)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCHHHheeeeeecCCCCCcCEEEEEeecCeEECCEEecccEeEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 30
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=100.00 E-value=1.5e-39 Score=285.90 Aligned_cols=152 Identities=45% Similarity=0.712 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCC
Q 018157 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 261 (360)
Q Consensus 182 ~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d 261 (360)
..++..++.+++++++++++++|+.|+|+||++|+.++.++++.++.++|+++|||++|+|++|+.+....
T Consensus 14 ~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~--------- 84 (165)
T PF01025_consen 14 EELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKSN--------- 84 (165)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------
Confidence 33344466677889999999999999999999999999999999999999999999999999999875311
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeeccceeCCEEeeee
Q 018157 262 TAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPA 341 (360)
Q Consensus 262 ~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVvQkGY~L~dRVLRPA 341 (360)
+....|.+||.||+++|.++|.++||++|++.|++|||++|+||+++++++.++|+|++|+++||+++|||||||
T Consensus 85 -----~~~~~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA 159 (165)
T PF01025_consen 85 -----EEEESLLEGLEMILKQLEDILEKNGVEEIEPVGEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGYRLGGRVLRPA 159 (165)
T ss_dssp -----CTCHHHHHHHHHHHHHHHHHHHTTTEEEE--TSSB--TTTEEEEEEECSSSS-CTBEEEECC-EEEETTEEEE-E
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHHCCCEecCCCCCCCCHHHheeheecCcCCCCcCeEEEEEecCEEECCEEeeee
Confidence 123689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 018157 342 EVGVTQ 347 (360)
Q Consensus 342 ~VvVsK 347 (360)
+|+|+|
T Consensus 160 ~V~V~K 165 (165)
T PF01025_consen 160 EVVVSK 165 (165)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999996
No 31
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.91 E-value=4.1 Score=34.89 Aligned_cols=72 Identities=21% Similarity=0.207 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHh
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 246 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl 246 (360)
.++.+.+..+-..+.+++.++.++-+...+++-|-+++|+|+.+............-...+.+-.|||.+..
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY 82 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHH
Confidence 334444555555566666667777777778888888999998776551111112222233444555555543
No 32
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=68.09 E-value=13 Score=32.40 Aligned_cols=71 Identities=20% Similarity=0.118 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHhHHHHHhc
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAI---QNFAKALLDVADNLGRASS 247 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Ai---e~flkdLLpVlDnLERAl~ 247 (360)
++|...+-++-.++..+++.+.++-+....++-|-+++|+|+.. ..+.+.+. ..-..+..+..|||.+...
T Consensus 11 ~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~--~~~e~~~~~k~~~~~~~~~~~~dnL~~lY~ 84 (114)
T COG4467 11 DNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE--PTLEKTAVKKEKPAVKKKGEGYDNLARLYQ 84 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC--ccccchhhhcccccccccCCCchhHHHHHh
Confidence 34444555555556777788888888888999999999999976 22222222 2344557888888887754
No 33
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=66.52 E-value=8.1 Score=31.66 Aligned_cols=17 Identities=6% Similarity=0.257 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 018157 276 VEMTEKQLGEVFKKFGV 292 (360)
Q Consensus 276 VeMI~kqL~kvL~k~GV 292 (360)
+.+|.+.+.++|.+.||
T Consensus 69 l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 69 LAGILRNIMDSLANMGI 85 (85)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 45678999999999997
No 34
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=66.47 E-value=1e+02 Score=31.08 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=56.4
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhHHhHH
Q 018157 169 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK------FAIQNFAKALLDVADNL 242 (360)
Q Consensus 169 e~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk------~Aie~flkdLLpVlDnL 242 (360)
-..||..+|...+.+..+.|.+.++.|++++.++..+...+.+|.+-+...-...-. ..+..+..++-...+.|
T Consensus 64 l~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L 143 (301)
T PF06120_consen 64 LKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATREL 143 (301)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999888899999999999999999999999999998887654332111111 22346666666666666
Q ss_pred HHHhc
Q 018157 243 GRASS 247 (360)
Q Consensus 243 ERAl~ 247 (360)
..+-.
T Consensus 144 ~~~~~ 148 (301)
T PF06120_consen 144 AVAQE 148 (301)
T ss_pred HHHHH
Confidence 65543
No 35
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=64.51 E-value=96 Score=33.43 Aligned_cols=21 Identities=29% Similarity=0.181 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018157 194 EMKQMQDKVLRSFAEMENVKD 214 (360)
Q Consensus 194 eleelkDk~lR~~AEfEN~RK 214 (360)
+...++|++.|.+++-+|--+
T Consensus 151 q~arYqD~larkr~~~e~e~q 171 (630)
T KOG0742|consen 151 QRARYQDKLARKRYEDELEAQ 171 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888877777665433
No 36
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.94 E-value=1.1e+02 Score=30.17 Aligned_cols=69 Identities=22% Similarity=0.195 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHh
Q 018157 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 246 (360)
Q Consensus 176 EL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl 246 (360)
+++....+..++++++.++-.+|.+.+-++.++++..+.|+++=..+. .-++..++.|+.-+-+|..-+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~--s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN--SRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhchhHHHHHHHHH
Confidence 444555566666777777888888899999999999988876532221 123445555554444454443
No 37
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=63.70 E-value=60 Score=30.31 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 018157 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 239 (360)
Q Consensus 186 e~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVl 239 (360)
+.+..++.++.+++.+...+..+|+.+.+.+.+|+..-...-+..|-..|...+
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~ 196 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYL 196 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888999999999999999999999998887666666654444433
No 38
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=63.67 E-value=83 Score=36.76 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccC
Q 018157 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (360)
Q Consensus 177 L~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski 256 (360)
+...+.+.+.+++.++.+++++.....++..+.+-+++-...+.++.- . +..-+++|.+.++........+
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~--~-------i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE--H-------IEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--H-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555444433321 1 2222333333333221000000
Q ss_pred C-CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCC---CCCccccceeeec
Q 018157 257 D-PSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINE---PFDPHRHNAMFQL 313 (360)
Q Consensus 257 ~-~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vGe---pFDP~lHEAV~~v 313 (360)
. ..+| .+..|-.-+--++..+..--..+--.|++|+|. -=||.||-||...
T Consensus 463 k~~k~d------kvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~ 517 (1074)
T KOG0250|consen 463 KKTKTD------KVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERC 517 (1074)
T ss_pred Hhcccc------hhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHH
Confidence 0 0011 122333333333444445445556778999985 5688999888654
No 39
>PTZ00464 SNF-7-like protein; Provisional
Probab=63.01 E-value=1.4e+02 Score=28.40 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeC
Q 018157 272 LLEGVEMTEKQLGEVFKKFGVEKFD 296 (360)
Q Consensus 272 l~eGVeMI~kqL~kvL~k~GVe~Ie 296 (360)
++.++..--+.|..+.+.++|..|+
T Consensus 103 vv~amk~g~kaLK~~~k~i~id~Vd 127 (211)
T PTZ00464 103 QVDAMKQAAKTLKKQFKKLNVDKVE 127 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4444444445555555555544443
No 40
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=63.00 E-value=1e+02 Score=26.70 Aligned_cols=48 Identities=8% Similarity=0.210 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH
Q 018157 198 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (360)
Q Consensus 198 lkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERA 245 (360)
....+.+...++..+....+++++.........+...+-++++.+...
T Consensus 81 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~ 128 (158)
T PF03938_consen 81 RQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKE 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777888888888888888888888888888888877776554
No 41
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.92 E-value=41 Score=29.12 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE 219 (360)
.++...+..+-..+..++.++.++-+...+++-|-+++|+|+.+.
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555556667777777888888889999999999999874
No 42
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=60.92 E-value=59 Score=30.92 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=18.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 170 IELSRDDLVKLLKEREELLMAKNEEMKQ 197 (360)
Q Consensus 170 ~~ls~dEL~k~l~e~Ee~Le~l~~elee 197 (360)
.+....-|.+.|++++++|...+++...
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455677788888777776666554
No 43
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=60.80 E-value=1.3e+02 Score=27.10 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=52.1
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHh
Q 018157 168 SEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKV-LRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 246 (360)
Q Consensus 168 ~e~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~-lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl 246 (360)
++..-...+...++++.+..|++.+.+..++.+.. .++....+++++..+.+.+..+..|.+.+-...=.++++|..-.
T Consensus 47 ~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~ 126 (161)
T COG0711 47 AEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEV 126 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666777777766666655443 35556777888888888888887777777766666666665443
No 44
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=59.40 E-value=1.1e+02 Score=29.66 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFA 232 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~fl 232 (360)
++|||...+.--.-+|+..+....+---+..-..+.+.|+-+++.+|+++++.....-++
T Consensus 2 s~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~ 61 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL 61 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678887554333333444322222211222233455677888888888888877554443
No 45
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=58.18 E-value=74 Score=30.64 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 018157 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 239 (360)
Q Consensus 186 e~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVl 239 (360)
.++..++.++.+++.+...+..+|+.+.+++.+|+......-+..|-..|...+
T Consensus 159 dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fl 212 (234)
T cd07664 159 DKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYL 212 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888999999999999999999999999887766666655554433
No 46
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.83 E-value=2.4e+02 Score=31.36 Aligned_cols=129 Identities=17% Similarity=0.113 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHhHHHHHhcchhhhcccC
Q 018157 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK-FAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (360)
Q Consensus 178 ~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk-~Aie~flkdLLpVlDnLERAl~~~~e~~ski 256 (360)
.+.+..++..++.++.++.+|+..+.++.++.++++.++.+=..+.+. --+..=+..+-.-++.|++.+.--
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~------- 493 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK------- 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------
Confidence 345556666667777777777777777777777776666554444432 222333445566677777776521
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC---CCCCccccceeeeccCC-CCCCCceEEEeecc
Q 018157 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPIN---EPFDPHRHNAMFQLPDN-SKPPGTVAHVLKSG 330 (360)
Q Consensus 257 ~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~vG---epFDP~lHEAV~~v~s~-e~~~gtVveVvQkG 330 (360)
..-++++.+.|..+.+-++++.-+ .| .+.+-..|+++...+.. ....|-|+-|..+|
T Consensus 494 ----------------~~~ve~L~~~l~~l~k~~~lE~sG-~g~pvk~ve~~t~~~Ie~~e~~~gik~GDvi~v~~~s 554 (652)
T COG2433 494 ----------------KKRVEELERKLAELRKMRKLELSG-KGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDPS 554 (652)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhhhhcC-CCcceehhhhhhHHHHHhHHHhhccccCcEEEEEcCC
Confidence 122334444454444433332221 12 12333456666554432 34567777777765
No 47
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.01 E-value=1.2e+02 Score=34.23 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=12.1
Q ss_pred ccccceeeeccCCCCCCCceEEEeec
Q 018157 304 PHRHNAMFQLPDNSKPPGTVAHVLKS 329 (360)
Q Consensus 304 P~lHEAV~~v~s~e~~~gtVveVvQk 329 (360)
+.....|.... -...|+|+++-..
T Consensus 637 ~~~Gd~V~v~~--~~~~g~v~~i~~~ 660 (782)
T PRK00409 637 LKVGDEVKYLS--LGQKGEVLSIPDD 660 (782)
T ss_pred CCCCCEEEEcc--CCceEEEEEEcCC
Confidence 34455555432 1245777777543
No 48
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=54.62 E-value=1.9e+02 Score=27.21 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018157 188 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLD 237 (360)
Q Consensus 188 Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLp 237 (360)
+..++.++.+++.+...+..+|+++..++.+|+......-+..|=..|..
T Consensus 151 ~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~ 200 (224)
T cd07623 151 LDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIK 200 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888888999999999999999999999998876666655554443
No 49
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=53.26 E-value=1.5e+02 Score=26.57 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 178 VKLLKEREELLMAKNEEMKQMQDKV-LRSFAEMENVKDRTIREAENSKKFAIQNFAK 233 (360)
Q Consensus 178 ~k~l~e~Ee~Le~l~~eleelkDk~-lR~~AEfEN~RKR~~rE~e~akk~Aie~flk 233 (360)
.+.+++.++.|...+++..++.+.. ..+.+..++.+....++.+..+..|...+-.
T Consensus 70 ~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~ 126 (174)
T PRK07352 70 AQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSA 126 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333221 1222333344444444444444444433333
No 50
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=52.57 E-value=2.1e+02 Score=30.18 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=43.1
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 168 SEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAI 228 (360)
Q Consensus 168 ~e~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Ai 228 (360)
.+..++++++.|+- +.+++.++++..-+++|..++|++..|.-+.-...+...+...
T Consensus 170 aDsSvspeq~kKlq----drveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ 226 (472)
T KOG2856|consen 170 ADSSVSPEQLKKLQ----DRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQ 226 (472)
T ss_pred cCccCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 35567999976653 3356677889999999999999998888777777776665544
No 51
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=52.39 E-value=1.6e+02 Score=25.62 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccC
Q 018157 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (360)
Q Consensus 177 L~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski 256 (360)
+.+.+.+....+...-.+.++.+++....++++++...-...+...++..|....-...-.+++....-.+....
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~----- 103 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA----- 103 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018157 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 310 (360)
Q Consensus 257 ~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~-vGepFDP~lHEAV 310 (360)
.....+..--+-..+++.+-...+.+.-..- +|...|+..|..+
T Consensus 104 ----------~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~l~~~~d~~~~~~~ 148 (156)
T PRK05759 104 ----------QAQAEIEQERKRAREELRKQVADLAVAGAEKILGRELDAAAQSDL 148 (156)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 52
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=52.02 E-value=2.6e+02 Score=27.95 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchh
Q 018157 191 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 250 (360)
Q Consensus 191 l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~ 250 (360)
++.|+-.+....+-+-|++.|++|..-||.-.++-.|+..++..++=+..-=.+.+..++
T Consensus 170 LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~gk~Ll~lld 229 (271)
T PF13805_consen 170 LEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEYGKRLLELLD 229 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444445555577999999999999999999999888888766654444455443
No 53
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=51.35 E-value=1.7e+02 Score=26.23 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018157 179 KLLKEREELLMAKNEEMKQ 197 (360)
Q Consensus 179 k~l~e~Ee~Le~l~~elee 197 (360)
.++++-+..|...+.+..+
T Consensus 70 ~~~~e~e~~L~~a~~ea~~ 88 (175)
T PRK14472 70 AILRKNRELLAKADAEADK 88 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 54
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.24 E-value=2.5e+02 Score=27.20 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcc
Q 018157 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAE---MENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV 248 (360)
Q Consensus 179 k~l~e~Ee~Le~l~~eleelkDk~lR~~AE---fEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~ 248 (360)
+.|.+...+.+.|..|-...-+.+.-..+| +|++-+.++.|....+..+ ..+-.++.++.|.+++.+..
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i-~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI-QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455444554 5788888888888866555 67778999999999888765
No 55
>PLN03217 transcription factor ATBS1; Provisional
Probab=49.96 E-value=1e+02 Score=26.09 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (360)
Q Consensus 171 ~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~ 226 (360)
.++.|++..++..+..+|-+...--..-+---.+.+.|.=||.|.+.+|+.++-+.
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888777766543111113335577788999999999998876543
No 56
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=49.58 E-value=69 Score=23.98 Aligned_cols=31 Identities=32% Similarity=0.557 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVL 203 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~~eleelkDk~l 203 (360)
|.+||...+.+.+..+..++.++.+|++..-
T Consensus 1 s~eeL~~~l~~~e~~~~~k~~~v~eLe~YiD 31 (48)
T PF09457_consen 1 SREELISLLKKQEEENARKDSRVRELEDYID 31 (48)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888777777777765443
No 57
>PRK04406 hypothetical protein; Provisional
Probab=48.67 E-value=1.4e+02 Score=23.99 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE 219 (360)
+.+.+...+.++|..+.-.+.-+++|.+-+.+.+.+++.+++.++.=
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888788888888888888887777776655443
No 58
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.04 E-value=4e+02 Score=28.99 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~ 216 (360)
+.+.+..+.+++.++..++.++.++..+.+.+++.+
T Consensus 430 l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 430 LGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 59
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=47.68 E-value=1.5e+02 Score=27.16 Aligned_cols=54 Identities=19% Similarity=0.317 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 018157 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVAD 240 (360)
Q Consensus 187 ~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlD 240 (360)
.+..++.++.+++.++..+..+|+.+-+.+.+|++.....-...|-.-|+..++
T Consensus 164 k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 164 KVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777778888888888888888887776666666555555443
No 60
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.70 E-value=2.1e+02 Score=32.25 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=5.7
Q ss_pred CCCceEEEe
Q 018157 319 PPGTVAHVL 327 (360)
Q Consensus 319 ~~gtVveVv 327 (360)
..|+|+++-
T Consensus 638 ~~g~v~~i~ 646 (771)
T TIGR01069 638 QKGKIVQIL 646 (771)
T ss_pred ceEEEEEEc
Confidence 457777764
No 61
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=46.66 E-value=51 Score=24.66 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 189 MAKNEEMKQMQDKVLRSFAEMENVKDR 215 (360)
Q Consensus 189 e~l~~eleelkDk~lR~~AEfEN~RKR 215 (360)
..++.++..|+.++.++++.|.-|||-
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888999999888873
No 62
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=46.20 E-value=52 Score=31.73 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
++..+....+++++.+++++.|-|+.+|..+++.+++.
T Consensus 174 Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 174 LEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 34444445567788888888899999998888877653
No 63
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.27 E-value=1.5e+02 Score=23.46 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE 219 (360)
.++...+.++|..+.=.+.-+++|.+-+.+.+.+++-+++.+..=
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566777777777777777777777777777776666554433
No 64
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=45.20 E-value=2.4e+02 Score=25.62 Aligned_cols=119 Identities=8% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccC
Q 018157 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (360)
Q Consensus 177 L~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski 256 (360)
+.+.+.++.+.+...-.+.++.+.+.....++++....-.+.+..++...|....-...-.+++....-.+....
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~----- 123 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLEN----- 123 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018157 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 310 (360)
Q Consensus 257 ~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~-vGepFDP~lHEAV 310 (360)
..-..+-.=-.-..++|.+-...+.|..-.. +++..|+..|..+
T Consensus 124 ----------~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~~ld~~~~~~l 168 (184)
T CHL00019 124 ----------YKNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRT 168 (184)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 65
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=45.19 E-value=2.8e+02 Score=26.41 Aligned_cols=102 Identities=8% Similarity=0.068 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCchhhHHHHHHHHHHH-
Q 018157 201 KVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMT- 279 (360)
Q Consensus 201 k~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~~~lksl~eGVeMI- 279 (360)
.+..++++.+.++.+...+++..+..+...+-..+..+. ++.|-..+... ++ .......+..+++++.-.
T Consensus 91 i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la--~~~A~kil~~~---~d----~~~~~~lid~~i~~l~~l~ 161 (246)
T TIGR03321 91 LLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEV--FAIARKVLTDL---AD----TDLEERMVDVFVQRLRTLD 161 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh---cC----hHHHHHHHHHHHHHhhcCC
Confidence 345666777777777777777777777777766666554 33333333321 11 111122344555555333
Q ss_pred ---HHHHHHHHHhCCCeeeCCCCCCCCccccceee
Q 018157 280 ---EKQLGEVFKKFGVEKFDPINEPFDPHRHNAMF 311 (360)
Q Consensus 280 ---~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~ 311 (360)
...|...+..-|....-...-|.+|...+.+.
T Consensus 162 ~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i~ 196 (246)
T TIGR03321 162 PDEKAALAEALADSGNPVLVRSAFELPEEQREQIR 196 (246)
T ss_pred HHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHHH
Confidence 22344445655533222235667776555443
No 66
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.99 E-value=2.2e+02 Score=25.73 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNE---EMKQMQDKVLRSFAEMENVKDRTIREAENS-KKFAIQNFAKA 234 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~---eleelkDk~lR~~AEfEN~RKR~~rE~e~a-kk~Aie~flkd 234 (360)
.+.+..+|.+....|+.++. -.++|+.++..++++++-.....+.++... +.+|+...|..
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~ 93 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKG 93 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554 345555556666666664444444444433 34555554444
No 67
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=44.31 E-value=2.3e+02 Score=26.37 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=31.0
Q ss_pred hcCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 170 IELSRDDLVKLLKEREE----------LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 170 ~~ls~dEL~k~l~e~Ee----------~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
..++.+++..-+..+.. +.+.++.++.+|+.++..+.++.+.+.++...
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899998766655443 33445566666666676776776666665543
No 68
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.94 E-value=4.5e+02 Score=28.09 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=31.7
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 167 ESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF 206 (360)
Q Consensus 167 ~~e~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~ 206 (360)
..+.+.++-+|.+-.+.+..+++.++++++..++++.++.
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~ 267 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQAL 267 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888899999998888877444
No 69
>PRK14150 heat shock protein GrpE; Provisional
Probab=42.73 E-value=1.8e+02 Score=27.21 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 198 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFA 232 (360)
Q Consensus 198 lkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~fl 232 (360)
++.++..+.+++.+...|+..|.+++++......-
T Consensus 46 l~~~l~~~~~~~kd~~lR~~AefeN~rkR~~kE~~ 80 (193)
T PRK14150 46 LEAQLAEAQAEERDSVLRARAEVENIRRRAEQDVE 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334447777778888888888777655543
No 70
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.60 E-value=4.7e+02 Score=30.83 Aligned_cols=73 Identities=19% Similarity=0.370 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 173 SRDDLVKLLKEREELLMAKN--------------------EEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFA 232 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~--------------------~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~fl 232 (360)
+..+|..++.++.++|+.++ +++.+++.++.-.+|+++.--+|...|.+++. .+.+...
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaq-e~ke~~k 303 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQ-EAKERYK 303 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33457666777777666542 23556667777777887777777777766665 3567788
Q ss_pred HHhhhHHhHHHHHh
Q 018157 233 KALLDVADNLGRAS 246 (360)
Q Consensus 233 kdLLpVlDnLERAl 246 (360)
..|-+..|++|+|.
T Consensus 304 ~emad~ad~iEmaT 317 (1243)
T KOG0971|consen 304 EEMADTADAIEMAT 317 (1243)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999999884
No 71
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.90 E-value=1.8e+02 Score=29.15 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 018157 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 239 (360)
Q Consensus 176 EL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVl 239 (360)
.|+..|+.++.+|.++.+.|-+-..++-.+.||-|+ +++++...+.-++.+.+..-.++
T Consensus 229 ~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~-----~~~~ek~Hke~v~qL~~k~~~~l 287 (305)
T KOG3990|consen 229 KLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEY-----QKELEKKHKERVQQLQKKKEESL 287 (305)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333334444454221 24555555555555555443333
No 72
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.86 E-value=1.8e+02 Score=28.40 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 180 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (360)
Q Consensus 180 ~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~ 226 (360)
.+.++...++.+++++..+++++.++..++.-++.++..++..+.+.
T Consensus 111 el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~ 157 (239)
T COG1579 111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666777777777777777777777776666644
No 73
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.73 E-value=3.9e+02 Score=27.11 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHh
Q 018157 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM-ENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 246 (360)
Q Consensus 176 EL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEf-EN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl 246 (360)
-|+..+++-+..|...+.||.+|+-++.|.+-|| |.=.-|.+.++ +.+.|. +=|+.|=.|+|.+.--|
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQL--ALKEAR-kEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQL--ALKEAR-KEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHhhh
Confidence 3557788888888888999999999999999887 34455554332 222222 23456666676665443
No 74
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=41.59 E-value=3e+02 Score=25.76 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 018157 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 238 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpV 238 (360)
..+.|.++..+++..++..+...+.+.+..++-...|+..|.+=-++.-...-.+.-.+...++.+
T Consensus 127 ~~~~L~~k~~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~ 192 (201)
T cd07622 127 AEDALANKKQQGEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQT 192 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444444444444444443333333222233333444444333
No 75
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.41 E-value=1.2e+02 Score=24.09 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018157 178 VKLLKEREELLMAKNEEMKQMQD 200 (360)
Q Consensus 178 ~k~l~e~Ee~Le~l~~eleelkD 200 (360)
.+.++++++.|.++.++-+.|-.
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444433
No 76
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.13 E-value=2.6e+02 Score=31.50 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 222 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~ 222 (360)
.++|...+.+....+++..++++.+..++.+..++++.-++.++++++.
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 566 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK 566 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333333333333333344444444444444444333333333333
No 77
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.10 E-value=1.9e+02 Score=25.26 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (360)
Q Consensus 176 EL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~ak 224 (360)
-|...+..++..++.++.++...+.+...+.+.+.........++++..
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555443
No 78
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=41.01 E-value=1.4e+02 Score=29.14 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Q 018157 227 AIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKF 290 (360)
Q Consensus 227 Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~ 290 (360)
-+-.++-.+|.+.|+-.|.-.++.. .++-|+..|...+..+.++.
T Consensus 191 ~VCeVCGA~Ls~~D~d~RladH~~G-------------------K~HlGy~~IR~~l~el~e~~ 235 (254)
T PF03194_consen 191 EVCEVCGAFLSVGDNDRRLADHFGG-------------------KQHLGYAKIREKLKELKEKR 235 (254)
T ss_pred cchhhhhhHHhccchHHHHHHHhcc-------------------chhhhHHHHHHHHHHHHHHH
Confidence 3456777999999998888777642 36778877777776665543
No 79
>PRK11637 AmiB activator; Provisional
Probab=40.73 E-value=1.3e+02 Score=30.88 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (360)
Q Consensus 179 k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk 225 (360)
+.+..++..|..++.++..++.++..+.++++..++.+.+-+..+.+
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555555444444444443333
No 80
>PRK14127 cell division protein GpsB; Provisional
Probab=40.43 E-value=1.4e+02 Score=25.85 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~ 217 (360)
.+|+-.-|.+....++.+.+++.+|++++.++.+..+.++.+..
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444445555556777778888888888888888888888766
No 81
>PRK14143 heat shock protein GrpE; Provisional
Probab=39.43 E-value=3.2e+02 Score=26.57 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 176 DLVKLLKEREELLMAKNE----EMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (360)
Q Consensus 176 EL~k~l~e~Ee~Le~l~~----eleelkDk~lR~~AEfEN~RKR~~rE~e~ak 224 (360)
+|...+..++++++.++. ..+++.+.-.|+..|.+++++......-...
T Consensus 71 ~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~l 123 (238)
T PRK14143 71 QLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEI 123 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 3456666667777777777776655544433
No 82
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=38.99 E-value=2.7e+02 Score=27.01 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAK 233 (360)
Q Consensus 187 ~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flk 233 (360)
.+...+.++.+++.+...+..+|+.+-+.+.+|+..-...-+..|=.
T Consensus 160 K~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~ 206 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKN 206 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888999999999999999999988776554444433
No 83
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=37.93 E-value=4.5e+02 Score=26.68 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchh
Q 018157 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 250 (360)
Q Consensus 171 ~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~ 250 (360)
.|+.--| ..|.++|..|+.++++-..-+=++--+.|-++.-|+..+.++.+.- ++..=...|++++|+|+++.+-+.
T Consensus 11 GL~~~aL-qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s--~LkREnq~l~e~c~~lek~rqKls 87 (307)
T PF10481_consen 11 GLPTRAL-QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYS--ALKRENQSLMESCENLEKTRQKLS 87 (307)
T ss_pred cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh--hhhhhhhhHHHHHHHHHHHHHHhh
Confidence 3444444 5578888888888777666555666777888888877777665544 556666789999999999977543
No 84
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=37.77 E-value=2.7e+02 Score=25.54 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 018157 173 SRDDLVKLLKEREELLMAKNEEMKQMQDK-VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGR 244 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~~eleelkDk-~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLER 244 (360)
..++..++.++-++.|.+.+.+...+... -.++.|+++-=|+.++.++.......+ +++.-++|+|.+
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~----~~~~~~~~~~~~ 124 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNI----EDINLAAKQFRT 124 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33444444555555555555555555444 555556666656655555555544433 444556666654
No 85
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=37.61 E-value=3.1e+02 Score=24.73 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred cchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 165 DSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL------------RSFAEMENVKDRTIREAENSKKFAIQNFA 232 (360)
Q Consensus 165 ~~~~e~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~l------------R~~AEfEN~RKR~~rE~e~akk~Aie~fl 232 (360)
.+-.+..-...+......+.++.|.+.+++..++.+... .+.++.++++.+...+++..+..++..+=
T Consensus 60 ~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk 139 (167)
T PRK08475 60 KRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVV 139 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhh
Q 018157 233 KALLD 237 (360)
Q Consensus 233 kdLLp 237 (360)
..++.
T Consensus 140 ~eii~ 144 (167)
T PRK08475 140 EEVLN 144 (167)
T ss_pred HHHHH
No 86
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=37.39 E-value=2.9e+02 Score=24.25 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDK-VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 243 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk-~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLE 243 (360)
.++....++.++.|...+.+...+.+. ...+.++.+..+....++.+..+..|...+-...-.....|.
T Consensus 55 ~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~ 124 (141)
T PRK08476 55 SDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLL 124 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433332 234445555555555555555555555555554444444333
No 87
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.34 E-value=3.4e+02 Score=30.62 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 195 MKQMQDKVLRSFAEMENVKDRTIREA 220 (360)
Q Consensus 195 leelkDk~lR~~AEfEN~RKR~~rE~ 220 (360)
+++.++.+.+.+++.+..+++++++.
T Consensus 527 ~e~~~~~~~~~~~e~~~~~~~l~~~~ 552 (771)
T TIGR01069 527 LEQKNEHLEKLLKEQEKLKKELEQEM 552 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 88
>PRK04325 hypothetical protein; Provisional
Probab=37.16 E-value=2.2e+02 Score=22.77 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
+.+...+.++|.++.-.+.-+++|.+-+.+.+.+++.+++.++.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRL 48 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777777777777777777666665555443
No 89
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.79 E-value=3.4e+02 Score=29.20 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 220 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~ 220 (360)
+.-.|+..+.+++.++..+..+-+.++.+..|+++.-.|+..|++..+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344455555666666666666666666666666655444444444433
No 90
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=36.16 E-value=1e+02 Score=30.42 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 223 (360)
Q Consensus 179 k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~a 223 (360)
+.+..+|.+-.+++.++.+..+.......|..+|++|.++-.+..
T Consensus 127 rKl~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~ 171 (265)
T PF06409_consen 127 RKLSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQ 171 (265)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 334455555666777788888888999999999999987765443
No 91
>PRK02119 hypothetical protein; Provisional
Probab=36.06 E-value=2.2e+02 Score=22.65 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 221 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e 221 (360)
..+...+.++|..+.-.+.-+++|.+-+.+.+.+++-+++.+..=.+
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777888888888887777766665554433
No 92
>PRK14160 heat shock protein GrpE; Provisional
Probab=35.99 E-value=4e+02 Score=25.56 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 189 MAKNEEMKQMQDKVLRSF---AEMENVKDRTIREAENSKKFAIQNFAK 233 (360)
Q Consensus 189 e~l~~eleelkDk~lR~~---AEfEN~RKR~~rE~e~akk~Aie~flk 233 (360)
..+++++..++.++..+. +++.+...|+..+.+++++......-.
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEG 104 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333 445555667777777777766555443
No 93
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=35.72 E-value=3.3e+02 Score=24.53 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchh
Q 018157 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN-VKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 250 (360)
Q Consensus 172 ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN-~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~ 250 (360)
+.+.+|..........++....++..++..+... ++.+. |+=..-.-+........-+++..++-+++.+..++..+.
T Consensus 3 ~d~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~-~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~ 81 (204)
T PF04740_consen 3 LDVSELHSQAESTNSSLKELKEQLESLQKAINQF-ISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIK 81 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456666665555555566666666555544433 33333 666666666666666667788888888888888775544
Q ss_pred h
Q 018157 251 E 251 (360)
Q Consensus 251 e 251 (360)
.
T Consensus 82 ~ 82 (204)
T PF04740_consen 82 D 82 (204)
T ss_pred H
Confidence 3
No 94
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=35.16 E-value=3.4e+02 Score=24.47 Aligned_cols=119 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccC
Q 018157 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (360)
Q Consensus 177 L~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski 256 (360)
+.+.+.++.+.+...-.+.++.+.+....+++++.-....+.+...+...|....-...-.+++....-.+..-.
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~----- 117 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIE----- 117 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018157 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 310 (360)
Q Consensus 257 ~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~-vGepFDP~lHEAV 310 (360)
..-..+-.-..-..+.|.+-...+-+.-... +|...|+..|..+
T Consensus 118 ----------~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~~l~~~~~~~l 162 (173)
T PRK13453 118 ----------TAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQKAL 162 (173)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 95
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.05 E-value=4.2e+02 Score=29.61 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHhHHHHHhcch
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE--NSKKFAIQNFAKALLDVADNLGRASSVV 249 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e--~akk~Aie~flkdLLpVlDnLERAl~~~ 249 (360)
.+.|...+..++..+++++++++.|++++.++..+.. ...|..+|+. +.+.+-++.=+.+==..+|.|++-+..+
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555444 3333333333 1122222333333334566666655543
No 96
>PRK11637 AmiB activator; Provisional
Probab=34.84 E-value=2.6e+02 Score=28.69 Aligned_cols=39 Identities=8% Similarity=0.208 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE 219 (360)
+......|..+++++..++.++..+.+++...++++...
T Consensus 84 i~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 84 ISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444333
No 97
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.71 E-value=4.6e+02 Score=28.93 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCe-eeCCCCCCCCcc
Q 018157 270 KSLLEGVEMTEKQLGEVFKKFGVE-KFDPINEPFDPH 305 (360)
Q Consensus 270 ksl~eGVeMI~kqL~kvL~k~GVe-~Ie~vGepFDP~ 305 (360)
....+.++-..-.+.+...+.++. .....|.+|.|.
T Consensus 370 ~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe 406 (581)
T KOG0995|consen 370 EDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPE 406 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 344555555555566666666665 334456555554
No 98
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=34.00 E-value=5.4e+02 Score=26.42 Aligned_cols=95 Identities=22% Similarity=0.273 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhHHhHH
Q 018157 180 LLKEREELLMAKNEEMKQMQ-----DKVLRSFAEMENVKDRTIREAE------------NSKKFAIQNFAKALLDVADNL 242 (360)
Q Consensus 180 ~l~e~Ee~Le~l~~eleelk-----Dk~lR~~AEfEN~RKR~~rE~e------------~akk~Aie~flkdLLpVlDnL 242 (360)
.+.++++.|..+=+++++|- +.-.-+..+.|-++.+-..+.+ ..++..+-.++-.+|.+.|+=
T Consensus 123 ~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D~d 202 (319)
T KOG0796|consen 123 KVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCGAFLSVNDAD 202 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhhHHHhccchH
Confidence 45666666666666666553 3445556666666651112221 223445667888999999999
Q ss_pred HHHhcchhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCe
Q 018157 243 GRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVE 293 (360)
Q Consensus 243 ERAl~~~~e~~ski~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe 293 (360)
.|.-.++. ..++-|+.+|...+.++.+..+..
T Consensus 203 ~RlaDHf~-------------------GKlHlGy~~iR~~l~eLk~~~~~~ 234 (319)
T KOG0796|consen 203 RRLADHFG-------------------GKLHLGYVLIREKLAELKKEKAKR 234 (319)
T ss_pred HHHHHhhc-------------------chHHHHHHHHHHHHHHHHHHHhHH
Confidence 88887763 258899999999888888877753
No 99
>PF05218 DUF713: Protein of unknown function (DUF713); InterPro: IPR007883 This family contains proteins of unknown function from Caenorhabditis species.
Probab=33.81 E-value=2.9e+02 Score=25.69 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=65.8
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCchhhHHHHHHHHHHHH
Q 018157 203 LRSFAEMENVK--DRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTE 280 (360)
Q Consensus 203 lR~~AEfEN~R--KR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~~~lksl~eGVeMI~ 280 (360)
.+...+|++.. ++...+-..-...-+..|....+..+|.|.-+...++.=..+ -...-.++-|..-+..+.
T Consensus 49 ~~~f~~Fe~~~~~~~~~~e~~~~~~~E~~~l~~~v~~a~~~l~~~f~~L~~L~~~-------~~D~iFlkvLqK~i~~va 121 (182)
T PF05218_consen 49 KNRFSDFEDEIKFKKTDEEDEEDLQSEISNLHKSVMSAYNMLENAFENLKKLSEK-------FPDKIFLKVLQKCISDVA 121 (182)
T ss_pred HHHHHHHhHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCcchHHHHHHHHHHHH
Confidence 34445665552 223333333334567788889999999999987766531111 112245777888888888
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCC
Q 018157 281 KQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKP 319 (360)
Q Consensus 281 kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~ 319 (360)
.+|..+|...+.-.++ -..|+ .+++++..+...+.|
T Consensus 122 ~~L~~il~~l~~~~~~--~~~~~-~L~~~~s~l~~~~Ip 157 (182)
T PF05218_consen 122 NKLLEILESLDELEND--KDWFQ-KLREAFSRLDPSDIP 157 (182)
T ss_pred HHHHHHHHHHHhhcCC--hHHHH-HHHHHHHcCCcccCC
Confidence 9999999887644333 23455 677777776544443
No 100
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=33.70 E-value=3.5e+02 Score=24.25 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 018157 179 KLLKEREELLM 189 (360)
Q Consensus 179 k~l~e~Ee~Le 189 (360)
+.+.++..+|.
T Consensus 56 ~kIeERn~eL~ 66 (177)
T PF13870_consen 56 EKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 101
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=33.05 E-value=1.7e+02 Score=28.28 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 220 (360)
Q Consensus 176 EL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~ 220 (360)
||.....+-.+++...+.++..|.+-+.++..|-+..|...++=+
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555667888889999999999999999999998888776
No 102
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.91 E-value=1.7e+02 Score=22.15 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 188 LMAKNEEMKQMQDKVLRSFAEMENV 212 (360)
Q Consensus 188 Le~l~~eleelkDk~lR~~AEfEN~ 212 (360)
+..+++++++++.+...+.++.+++
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444
No 103
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=32.75 E-value=98 Score=29.74 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR 204 (360)
Q Consensus 172 ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR 204 (360)
.+...|..++.|+|+.|-.++.++..|..+|+-
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqkYLE 89 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQKYLE 89 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999864
No 104
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=32.74 E-value=3.5e+02 Score=23.91 Aligned_cols=119 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccC
Q 018157 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (360)
Q Consensus 177 L~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski 256 (360)
+.+.+.+++..+...-.+.++.+.+....+++++..-.-...+...+...|....-...=.+++....-.....+
T Consensus 33 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~----- 107 (164)
T PRK14473 33 VLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKE----- 107 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018157 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 310 (360)
Q Consensus 257 ~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~-vGepFDP~lHEAV 310 (360)
.....+..--.-....|.+-...+-+.--.. +|...|+..|..+
T Consensus 108 ----------~a~~~I~~ek~~a~~~L~~~i~~la~~~a~kil~~~l~~~~~~~l 152 (164)
T PRK14473 108 ----------EARAQAEQERQRMLSELKSQIADLVTLTASRVLGAELQARGHDAL 152 (164)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 105
>PRK09039 hypothetical protein; Validated
Probab=32.65 E-value=3.3e+02 Score=27.57 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=5.7
Q ss_pred HHHHHHHHHhC
Q 018157 280 EKQLGEVFKKF 290 (360)
Q Consensus 280 ~kqL~kvL~k~ 290 (360)
...+..+|..+
T Consensus 243 L~~ia~~l~~~ 253 (343)
T PRK09039 243 IAKLAAALIEL 253 (343)
T ss_pred HHHHHHHHHHh
Confidence 44555555543
No 106
>PRK00846 hypothetical protein; Provisional
Probab=32.47 E-value=2.8e+02 Score=22.69 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~ak 224 (360)
.+++...+.++|..+.-.+.-+++|.+-+.+.+..++.+++.++.=.+..+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778777777777888888888888888877777665555444
No 107
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.28 E-value=5.2e+02 Score=26.10 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH--HHHHHHHHHHHHhhhHHhHHHHH
Q 018157 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT--------------IREAEN--SKKFAIQNFAKALLDVADNLGRA 245 (360)
Q Consensus 182 ~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~--------------~rE~e~--akk~Aie~flkdLLpVlDnLERA 245 (360)
++++.+|..++.+..++.-...|+.-|.+-.+.+. +.+... +.+....+.++.|=..-|+||||
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 34444444444444454444444444444433332 233222 22344566777777788888887
Q ss_pred hc
Q 018157 246 SS 247 (360)
Q Consensus 246 l~ 247 (360)
-.
T Consensus 128 kR 129 (333)
T KOG1853|consen 128 KR 129 (333)
T ss_pred hh
Confidence 54
No 108
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=31.97 E-value=1.9e+02 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=18.1
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 018157 169 EIELSRDDLVKLLKEREELLMAKNEEM 195 (360)
Q Consensus 169 e~~ls~dEL~k~l~e~Ee~Le~l~~el 195 (360)
=..+|.+||...++.++.+|..++.++
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred chhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888777777666665554444
No 109
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=31.81 E-value=6.9e+02 Score=28.18 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 018157 270 KSLLEGVEMTEKQLGEVFKKF 290 (360)
Q Consensus 270 ksl~eGVeMI~kqL~kvL~k~ 290 (360)
..|..+|+.|...|..+|..+
T Consensus 1018 ~~f~~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 1018 EVFMEAFEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888886655
No 110
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=31.68 E-value=2e+02 Score=31.02 Aligned_cols=57 Identities=19% Similarity=0.151 Sum_probs=41.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (360)
Q Consensus 170 ~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~ 226 (360)
...+.|||..++-++...++.++++...--++++.-+-|-..+|-|++-|++.+++.
T Consensus 567 ~k~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka 623 (627)
T KOG4348|consen 567 KKNSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKA 623 (627)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 344778888888888777777777665555566666666667888888888887764
No 111
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=31.61 E-value=2e+02 Score=25.99 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018157 194 EMKQMQDKVLRSFAEMENVKDR 215 (360)
Q Consensus 194 eleelkDk~lR~~AEfEN~RKR 215 (360)
|++.|+..+-|+.-|.++|+-+
T Consensus 89 qv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 89 QVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333
No 112
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=31.57 E-value=3.8e+02 Score=24.00 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 018157 202 VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 239 (360)
Q Consensus 202 ~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVl 239 (360)
...+.++.+.++.....+++..+..+...+-..+..+.
T Consensus 106 ~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la 143 (174)
T PRK07352 106 EKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELA 143 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666655555544
No 113
>PRK14162 heat shock protein GrpE; Provisional
Probab=31.50 E-value=4.5e+02 Score=24.83 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 195 MKQMQDKVLRSFAEMENVKDRTIREA 220 (360)
Q Consensus 195 leelkDk~lR~~AEfEN~RKR~~rE~ 220 (360)
.+++.+.-.|+..|.++.++......
T Consensus 66 ~AEfeN~rkR~~kE~e~~~~~a~~~~ 91 (194)
T PRK14162 66 QAEIQNMQNRYAKERAQLIKYESQSL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777654443
No 114
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.32 E-value=3.7e+02 Score=23.75 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 188 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAI 228 (360)
Q Consensus 188 Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Ai 228 (360)
+..++.++.++++.+..+..+++-+..++..|+......-.
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~ 187 (218)
T cd07596 147 VEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERA 187 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666667777777777777777766654443
No 115
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=31.31 E-value=4e+02 Score=24.12 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccC
Q 018157 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (360)
Q Consensus 177 L~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski 256 (360)
+.+.+.++.+.+...-.+.++.+.+-...+++++.-....+.+..++...|....-...-.+++....-.+...+
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~----- 126 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLA----- 126 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018157 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 310 (360)
Q Consensus 257 ~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~-vGepFDP~lHEAV 310 (360)
..-..+..--.-..+++......+-+..... +|...|+..|..+
T Consensus 127 ----------~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~l 171 (184)
T PRK13455 127 ----------AAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAKQMTAADANAL 171 (184)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
No 116
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=31.04 E-value=6.8e+02 Score=26.69 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH
Q 018157 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (360)
Q Consensus 178 ~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERA 245 (360)
..+.+.+.+.+....+++..+.+...++..+|++...++..+.......-.+..++.|+.+.-...-.
T Consensus 76 ~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~ 143 (448)
T COG1322 76 NELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEK 143 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566677788888999999999999999999999888888888888888766544433
No 117
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.74 E-value=3.6e+02 Score=26.90 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~ 226 (360)
+.|...+.+....+..+++++.+.+..+..+..+++-++.|+....+-..+.
T Consensus 55 ~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 55 ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555566666666666666666666666555544444433
No 118
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=30.59 E-value=4.1e+02 Score=24.06 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 193 EEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (360)
Q Consensus 193 ~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~ 226 (360)
.+...++....++++|++.++.++..|+...+.-
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~ 106 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAE 106 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788888888888888887776653
No 119
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=30.43 E-value=7.3e+02 Score=29.12 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCC
Q 018157 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 263 (360)
Q Consensus 184 ~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~ 263 (360)
.+..+..++++++.+..=-+++..+|+.+.+|...-..+..+ +..-...|+.++..|+.-.
T Consensus 947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~d--l~~a~~~l~~~i~~~d~~~----------------- 1007 (1163)
T COG1196 947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRED--LEEAKEKLLEVIEELDKEK----------------- 1007 (1163)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-----------------
Confidence 334445555555555555678888888888887655444432 2334445555555444322
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhC
Q 018157 264 GAVPLLKSLLEGVEMTEKQLGEVFKKF 290 (360)
Q Consensus 264 ~a~~~lksl~eGVeMI~kqL~kvL~k~ 290 (360)
...|.++|.-|...|..+|..+
T Consensus 1008 -----~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 1008 -----RERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHh
Confidence 2458888999999999999887
No 120
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=30.18 E-value=4.1e+02 Score=24.50 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 215 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR 215 (360)
+..++..+.....++..|+..+..+...+..++.+
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555444444443
No 121
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.12 E-value=1.8e+02 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKD 214 (360)
Q Consensus 184 ~Ee~Le~l~~eleelkDk~lR~~AEfEN~RK 214 (360)
+.+++..+++++++++.+..++.++.+.++.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344555555666666666666666655553
No 122
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.05 E-value=2.7e+02 Score=21.72 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 222 (360)
Q Consensus 179 k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~ 222 (360)
..+.++|..+.-.+.-+++|.+-+.+...+++-+++.++.=.+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666555544333
No 123
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=30.02 E-value=5e+02 Score=27.92 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHhHHHH
Q 018157 190 AKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALL-DVADNLGR 244 (360)
Q Consensus 190 ~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLL-pVlDnLER 244 (360)
..+++++.+.+.-.++..+|+|+-.++-.+.........+.-+..|| |+-+.|+.
T Consensus 96 ~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~ 151 (475)
T PRK10361 96 HADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDG 151 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34445555666666777888888877766666554443333333333 44444443
No 124
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=29.89 E-value=27 Score=32.10 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=22.2
Q ss_pred Ccccccccccccccc-cccccccccccCCCC
Q 018157 46 NKLTQVSLFHQTTLN-SSIFQRFGFSSASPE 75 (360)
Q Consensus 46 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (360)
-+..|+.++..-.++ -..||.|||+|.-|.
T Consensus 14 ~Q~vQv~~~agE~~~~ve~~q~yGftS~Pp~ 44 (162)
T PF06890_consen 14 VQTVQVQGLAGETRDDVERFQQYGFTSVPPP 44 (162)
T ss_pred eEEEEEEecCCchhcCcchhhcCccccCCCC
Confidence 344899888765553 578999999997554
No 125
>PRK14155 heat shock protein GrpE; Provisional
Probab=29.86 E-value=5e+02 Score=24.79 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 195 MKQMQDKVLRSFAEMENVKDRTIREAE 221 (360)
Q Consensus 195 leelkDk~lR~~AEfEN~RKR~~rE~e 221 (360)
.+++.+--.|+..|.+++++......-
T Consensus 40 ~AefeN~RKR~~kE~e~~~~~a~~~~~ 66 (208)
T PRK14155 40 AAEAENTKRRAEREMNDARAYAIQKFA 66 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777776655544
No 126
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.60 E-value=2.7e+02 Score=21.68 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
++|...++=.+..++++.+.+.+....+.++...+..++.|+..
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666654
No 127
>PRK00295 hypothetical protein; Provisional
Probab=29.57 E-value=2.8e+02 Score=21.77 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 180 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (360)
Q Consensus 180 ~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE 219 (360)
.+.++|..+.-.+.-+++|.+-+.+.+.+++.+++.+..=
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666677776666666666655554433
No 128
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=29.45 E-value=4.4e+02 Score=24.46 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 186 e~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
..+..++.+..+|..+...+.+..+...++...
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555544443
No 129
>PHA02109 hypothetical protein
Probab=29.24 E-value=1.6e+02 Score=28.07 Aligned_cols=41 Identities=29% Similarity=0.301 Sum_probs=29.8
Q ss_pred hhcCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 169 EIELSRDDL------VKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 209 (360)
Q Consensus 169 e~~ls~dEL------~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEf 209 (360)
+...+.|.| .+++.+++..|+.+-.|+..++++++..+|+.
T Consensus 177 ~~~~t~~~L~~~~~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 177 ERSHTGENLEGLTDKLKQISELTIKLEALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred HhccchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666 56777788888888888888888887776654
No 130
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=28.87 E-value=3.2e+02 Score=23.52 Aligned_cols=14 Identities=7% Similarity=0.007 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhCC
Q 018157 278 MTEKQLGEVFKKFG 291 (360)
Q Consensus 278 MI~kqL~kvL~k~G 291 (360)
-+...|...+...+
T Consensus 108 ~~~d~~~e~~e~~~ 121 (171)
T PF03357_consen 108 KLMDDFQEEMEDQD 121 (171)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666666665
No 131
>PRK10780 periplasmic chaperone; Provisional
Probab=28.31 E-value=4.3e+02 Score=23.56 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=10.1
Q ss_pred HHHHHHHHHhCCCeee
Q 018157 280 EKQLGEVFKKFGVEKF 295 (360)
Q Consensus 280 ~kqL~kvL~k~GVe~I 295 (360)
.+-+..+=+..|+.-|
T Consensus 126 ~~ai~~vak~~gy~~V 141 (165)
T PRK10780 126 QTAVKSVANKQGYDLV 141 (165)
T ss_pred HHHHHHHHHHcCCeEE
Confidence 4455666677776655
No 132
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.18 E-value=2.2e+02 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018157 191 KNEEMKQMQDKVLRSFAEMENV 212 (360)
Q Consensus 191 l~~eleelkDk~lR~~AEfEN~ 212 (360)
++.++.+++.++..+.++.+.+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L 43 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEEL 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 133
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=27.98 E-value=3e+02 Score=30.20 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccCCCCCCCCCchhhHHHHHHHHHHH
Q 018157 200 DKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMT 279 (360)
Q Consensus 200 Dk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski~~s~d~~~a~~~lksl~eGVeMI 279 (360)
..|.-...+|+++-|-+.|-+......++-+|.-..|--++++=...-.-++...+++.. ..+.+..+.+-|+=.
T Consensus 46 ~Dw~~i~~eFd~L~k~~~K~~~~~~~~~~P~~yir~l~~Led~v~e~~~~ke~~Kkms~~-----nakaln~lkQklkK~ 120 (595)
T PF05470_consen 46 NDWSSILTEFDKLNKQLEKSKKIQQNEGIPRFYIRALVELEDFVNETWADKEAKKKMSKN-----NAKALNTLKQKLKKY 120 (595)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHhhhHhhhhcCHH-----hHHHHHHHHHHHHhh
Confidence 468899999999999999987766667777777777666666544421111111122211 123445555555555
Q ss_pred HHHHHHHHHhC
Q 018157 280 EKQLGEVFKKF 290 (360)
Q Consensus 280 ~kqL~kvL~k~ 290 (360)
.+.+...+.+|
T Consensus 121 ~k~~e~~i~~y 131 (595)
T PF05470_consen 121 NKEYEAQIAKY 131 (595)
T ss_pred hhhHHHHHHHH
Confidence 55556555554
No 134
>PRK10869 recombination and repair protein; Provisional
Probab=27.51 E-value=3.8e+02 Score=28.87 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 018157 218 REAENSKKFAIQNFAKALLDVADNLGR 244 (360)
Q Consensus 218 rE~e~akk~Aie~flkdLLpVlDnLER 244 (360)
.++...++.+...|...+...+.+|..
T Consensus 362 ~~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 362 QKLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455566666777777777777777665
No 135
>PRK04325 hypothetical protein; Provisional
Probab=27.24 E-value=3.2e+02 Score=21.76 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~ 217 (360)
.++|...++=.+..++.+.+.+.+....+.++...+..+..|+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777778888888887777777777788888877764
No 136
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.20 E-value=6.4e+02 Score=25.22 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=45.3
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhHH
Q 018157 169 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS---------KKFAIQNFAKALLDVA 239 (360)
Q Consensus 169 e~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~a---------kk~Aie~flkdLLpVl 239 (360)
++...++++...+..+...|++..++.+++-+.+....++.+.-+.-...+...+ .+...+.=+....|.+
T Consensus 12 et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L 91 (344)
T PF12777_consen 12 ETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPAL 91 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777777777777766666555443333333333222221111 1222345556778888
Q ss_pred hHHHHHhcchh
Q 018157 240 DNLGRASSVVK 250 (360)
Q Consensus 240 DnLERAl~~~~ 250 (360)
+.-..|+..++
T Consensus 92 ~~A~~al~~l~ 102 (344)
T PF12777_consen 92 EEAQEALKSLD 102 (344)
T ss_dssp HHHHHHHHCS-
T ss_pred HHHHHHHHhCC
Confidence 88888877664
No 137
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.09 E-value=2.9e+02 Score=22.87 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 182 ~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
..++..++.++.+++.+..++.....++.+++.++..
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666666777777777777666543
No 138
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=26.80 E-value=4e+02 Score=22.69 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018157 179 KLLKEREELLMAKNEEMKQMQDKV-LRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (360)
Q Consensus 179 k~l~e~Ee~Le~l~~eleelkDk~-lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdL 235 (360)
..+.+-++.|...+.+..++.+.. ..+.++.++.+....++.+.....+...+-..-
T Consensus 57 ~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~ 114 (140)
T PRK07353 57 KLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQK 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333322 233344455555555555555555554444433
No 139
>PRK14159 heat shock protein GrpE; Provisional
Probab=26.78 E-value=5.2e+02 Score=24.03 Aligned_cols=56 Identities=13% Similarity=-0.025 Sum_probs=31.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 169 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (360)
Q Consensus 169 e~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~ak 224 (360)
+..+..+++.++.++..+....+..-.+++.+.-.|+..|.+.+++......-...
T Consensus 24 ~~~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~L 79 (176)
T PRK14159 24 LQNIEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDL 79 (176)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544433433333333444566667777777777777777665544433
No 140
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.64 E-value=4.7e+02 Score=23.45 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred cchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH
Q 018157 165 DSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL-RSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 243 (360)
Q Consensus 165 ~~~~e~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~l-R~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLE 243 (360)
++-.+..-...+....+.+-++.|...+.+..++.+... .+.+..++++....++.+..+..+...+-..---++..|.
T Consensus 54 ~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~ 133 (173)
T PRK13460 54 NDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQ 133 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 018157 244 R 244 (360)
Q Consensus 244 R 244 (360)
.
T Consensus 134 ~ 134 (173)
T PRK13460 134 N 134 (173)
T ss_pred H
No 141
>PRK13410 molecular chaperone DnaK; Provisional
Probab=26.64 E-value=5.1e+02 Score=28.60 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=10.4
Q ss_pred hcCCHHHHHHHHHHHH
Q 018157 170 IELSRDDLVKLLKERE 185 (360)
Q Consensus 170 ~~ls~dEL~k~l~e~E 185 (360)
..++.+++.+.+++.+
T Consensus 500 ~~ls~~ei~~~~~~~~ 515 (668)
T PRK13410 500 STLSEQEVNRMIQEAE 515 (668)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4578788776655543
No 142
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=26.35 E-value=6e+02 Score=24.55 Aligned_cols=119 Identities=8% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcchhhhcccC
Q 018157 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (360)
Q Consensus 177 L~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~~~e~~ski 256 (360)
+.+.+.+.++.+...-.+.++.+.+....+++++.-.....++...+...|....-..-=.+++.-..-.+....
T Consensus 30 i~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~----- 104 (250)
T PRK14474 30 IIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARD----- 104 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 018157 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 310 (360)
Q Consensus 257 ~~s~d~~~a~~~lksl~eGVeMI~kqL~kvL~k~GVe~Ie~-vGepFDP~lHEAV 310 (360)
.....+-.--+-..+.|.+-...+.+.--.. +++..|+..|..+
T Consensus 105 ----------~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~~~d~~~~~~l 149 (250)
T PRK14474 105 ----------EWLEQLEREKQEFFKALQQQTGQQMVKIIRAALADLANATLEQQI 149 (250)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
No 143
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.33 E-value=3.4e+02 Score=24.16 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 018157 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQD--------KVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 170 ~~ls~dEL~k~l~e~Ee~Le~l~~eleelkD--------k~lR~~AEfEN~RKR~~r 218 (360)
..++.+||...+.+++++++.++..++.++. ...++..++..+++...+
T Consensus 107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 107 SEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKK 163 (169)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
No 144
>PRK04406 hypothetical protein; Provisional
Probab=26.11 E-value=3.5e+02 Score=21.75 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~ 216 (360)
.++|...++=.+..++.+.+.+.+.+..+.++.+.+..++.|+
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566665555555555555556666665555
No 145
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=25.41 E-value=6.7e+02 Score=24.83 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=49.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhHHh
Q 018157 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFA------IQNFAKALLDVAD 240 (360)
Q Consensus 170 ~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~A------ie~flkdLLpVlD 240 (360)
..++.+++.|+ ...++..+.++..-+++|.....++..|+.+..++....-+.. .-.|++++|-.+-
T Consensus 163 ~~~~~~q~~K~----~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~ 235 (258)
T cd07679 163 PALNPEQLKKL----QDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQ 235 (258)
T ss_pred CcCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677776554 3346677888899999999999999999999999887665443 3467777766553
No 146
>smart00338 BRLZ basic region leucin zipper.
Probab=25.20 E-value=2.9e+02 Score=20.77 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 214 (360)
Q Consensus 179 k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RK 214 (360)
..+.+++..+..++.+..+|..++..+..++..++.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555556666666666555555555543
No 147
>PRK14154 heat shock protein GrpE; Provisional
Probab=25.19 E-value=6.1e+02 Score=24.30 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 195 MKQMQDKVLRSFAEMENVKDRTIREA 220 (360)
Q Consensus 195 leelkDk~lR~~AEfEN~RKR~~rE~ 220 (360)
.+++.+.-.|+..|.+++++......
T Consensus 79 ~ADfeNyRKR~~kE~e~~~~~a~e~~ 104 (208)
T PRK14154 79 QAEMDNLRKRIEREKADIIKFGSKQL 104 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666677766666665443
No 148
>PRK14158 heat shock protein GrpE; Provisional
Probab=25.16 E-value=5.9e+02 Score=24.08 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 195 MKQMQDKVLRSFAEMENVKDRTIREAE 221 (360)
Q Consensus 195 leelkDk~lR~~AEfEN~RKR~~rE~e 221 (360)
.+++.+--.|+..|.+++++......-
T Consensus 67 ~AefeN~RkR~~kE~e~~~~~a~~~~~ 93 (194)
T PRK14158 67 RADLENYRKRVQKEKEELLKYGNESLI 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777777666555443
No 149
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.08 E-value=3e+02 Score=20.68 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMEN 211 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN 211 (360)
+.+++..+..+..+...|...+..+..++..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333
No 150
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.06 E-value=2.8e+02 Score=27.09 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~ 216 (360)
|=..+.+.|+|+++.....++..++.++..++||-..+-.++
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466777777777777777777777777777755554443
No 151
>PRK14157 heat shock protein GrpE; Provisional
Probab=25.02 E-value=6.5e+02 Score=24.52 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 190 AKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 223 (360)
Q Consensus 190 ~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~a 223 (360)
.+....+++.+.-.|+..|.+.++++....+-..
T Consensus 99 ~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~d 132 (227)
T PRK14157 99 ALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTA 132 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456677777788888888888776554433
No 152
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.95 E-value=3.3e+02 Score=21.16 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (360)
Q Consensus 177 L~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~ 217 (360)
+.+.+...+..++..++.+..++....+...+..|+.+++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~ 44 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLE 44 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 153
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.93 E-value=1.2e+02 Score=27.56 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 189 MAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 189 e~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
+..+++++++++++....+|++.+|+..+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666544
No 154
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.84 E-value=4.7e+02 Score=22.85 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE 219 (360)
..++|.+.+.++...+..+. +++.+...|+..+.+++++.....
T Consensus 19 ~l~~l~~~~~~l~~~~~r~~---ae~en~~~r~~~e~~~~~~~~~~~ 62 (165)
T PF01025_consen 19 ELEELEKEIEELKERLLRLQ---AEFENYRKRLEKEKEEAKKYALEK 62 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544444444 444444555556666655544333
No 155
>PRK00736 hypothetical protein; Provisional
Probab=24.83 E-value=3.4e+02 Score=21.26 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 222 (360)
Q Consensus 181 l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~ 222 (360)
+.++|..+.-.+.-+++|.+-+.+.+.+++-++++++.=.++
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666667777777777777776666655544333
No 156
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=24.57 E-value=6.7e+02 Score=24.49 Aligned_cols=57 Identities=7% Similarity=0.089 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHhcc
Q 018157 191 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV 248 (360)
Q Consensus 191 l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnLERAl~~ 248 (360)
...+|..|.-++.-+.+.|..+..-....+..+.+.-. +.+..-=|.+|-..+|-..
T Consensus 19 atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg-~~I~karPYyea~~~a~~a 75 (239)
T PF05276_consen 19 ATDEINRLENELDEARATFRRLLSESTKKLNELAKKLG-SCIEKARPYYEARRKAKEA 75 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhchHHHHHHHHHHH
Confidence 33444445555555555555555555555544443322 5667777888888777554
No 157
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.37 E-value=4.3e+02 Score=29.04 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN 211 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN 211 (360)
.++|.+.+.++...++.++.+++.++..+..+..+.+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~ 367 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEE 367 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555544444444444443
No 158
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.82 E-value=2.8e+02 Score=22.96 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENV 212 (360)
Q Consensus 176 EL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~ 212 (360)
.|.+.++.++..++.++++++++..++..+.+++..+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666666666655544
No 159
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.67 E-value=1.8e+02 Score=31.20 Aligned_cols=12 Identities=0% Similarity=0.113 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 018157 187 LLMAKNEEMKQM 198 (360)
Q Consensus 187 ~Le~l~~eleel 198 (360)
.+++++++++.+
T Consensus 77 kasELEKqLaaL 88 (475)
T PRK13729 77 TAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 160
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.62 E-value=6.7e+02 Score=24.17 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 194 EMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (360)
Q Consensus 194 eleelkDk~lR~~AEfEN~RKR~~rE~e~ak 224 (360)
..+++.+.-.|+..|.+++++.....+-...
T Consensus 66 ~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~L 96 (214)
T PRK14163 66 LQAEYQNYRRRVERDRVTVKEIAVANLLSEL 96 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888888888877766554433
No 161
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.44 E-value=4e+02 Score=26.40 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018157 189 MAKNEEMKQMQDKVLRSF 206 (360)
Q Consensus 189 e~l~~eleelkDk~lR~~ 206 (360)
+.++.++++.++++.|+.
T Consensus 159 eele~e~ee~~erlk~le 176 (290)
T COG4026 159 EELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555544443
No 162
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=23.33 E-value=6.2e+02 Score=23.69 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCee
Q 018157 269 LKSLLEGVEMTEKQLGEVFKKFGVEK 294 (360)
Q Consensus 269 lksl~eGVeMI~kqL~kvL~k~GVe~ 294 (360)
+..+.+.++-...+|..+|...++.+
T Consensus 152 l~~l~~~lE~keaqL~evl~~~nldp 177 (201)
T PF13851_consen 152 LQALSEQLEKKEAQLNEVLAAANLDP 177 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 44566666666777777777766554
No 163
>PRK09039 hypothetical protein; Validated
Probab=23.26 E-value=7.9e+02 Score=24.87 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (360)
Q Consensus 178 ~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~ 216 (360)
...+..+...|...+..+.+..-++.++.++++.+|+.+
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666667777777776663
No 164
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.25 E-value=7.2e+02 Score=24.38 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 018157 175 DDLVKLLKEREE---LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 239 (360)
Q Consensus 175 dEL~k~l~e~Ee---~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVl 239 (360)
++|.+..++++. .+..++.++++++.++.+...+..-+++|..+-......--.+.-+.+|-.=+
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~ 98 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEI 98 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 444444444333 34556777888888999999999999888877666554333333333443333
No 165
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=23.23 E-value=4.9e+02 Score=22.43 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhCCCeeeC
Q 018157 277 EMTEKQLGEVFKKFGVEKFD 296 (360)
Q Consensus 277 eMI~kqL~kvL~k~GVe~Ie 296 (360)
..|..-+..+-++.|+.-|=
T Consensus 116 ~~i~~~v~~~a~~~g~~~Vl 135 (158)
T PF03938_consen 116 KKINKAVEEYAKENGYDLVL 135 (158)
T ss_dssp HHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 34566677777888887763
No 166
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.20 E-value=5.1e+02 Score=22.88 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (360)
Q Consensus 177 L~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk 225 (360)
|...++.....|..+++++......|.+-.+.++.+++.++......+.
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 167
>PRK14142 heat shock protein GrpE; Provisional
Probab=23.09 E-value=7.1e+02 Score=24.25 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 193 EEMKQMQDKVLRSFAEMENVKDRTIREA 220 (360)
Q Consensus 193 ~eleelkDk~lR~~AEfEN~RKR~~rE~ 220 (360)
...+++.+.-.|+..|.+++++.....+
T Consensus 58 R~~AEfEN~RKR~erE~e~~~~~A~e~~ 85 (223)
T PRK14142 58 RVQADFANYRKRALRDQQAAADRAKASV 85 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666665554443
No 168
>PRK00736 hypothetical protein; Provisional
Probab=23.08 E-value=3.7e+02 Score=21.05 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
.++|...++-.+..++.+.+.+......+.++...+..+..|+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777777777777777777777777777743
No 169
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.01 E-value=4e+02 Score=21.32 Aligned_cols=53 Identities=13% Similarity=-0.016 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~akk 225 (360)
+..-|...+.++.++-..+..+..+|+....+++.+..+...|+..=+..+..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 170
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=23.00 E-value=4.2e+02 Score=26.47 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 185 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 185 Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
.+..++++.++.+|.++..+++++.+-+|+..+-
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINES 122 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777888888888887777766543
No 171
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.93 E-value=3.9e+02 Score=21.19 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
..+|...++=.+..++.+.+.+.+....+.++.+.+..++.|+..
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666667777777777777777777777777777777777643
No 172
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.82 E-value=6.6e+02 Score=23.82 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=3.0
Q ss_pred HHhHHHH
Q 018157 238 VADNLGR 244 (360)
Q Consensus 238 VlDnLER 244 (360)
.+|.|+.
T Consensus 110 m~~~L~~ 116 (251)
T PF11932_consen 110 MIDELEQ 116 (251)
T ss_pred HHHHHHH
Confidence 3444444
No 173
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=22.73 E-value=4.5e+02 Score=21.91 Aligned_cols=46 Identities=4% Similarity=0.081 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 220 (360)
Q Consensus 175 dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~ 220 (360)
+.|-..+..+..-|..+++....+..++.+++.-..-.|+-++.+.
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444555555555666666665555555555554443
No 174
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.30 E-value=3.8e+02 Score=25.20 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 178 ~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
...+.++..+|+..+..++.|...+.-++.||++.|+-..+
T Consensus 136 Q~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~k 176 (188)
T PF05335_consen 136 QQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYK 176 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777777777777765443
No 175
>PRK02119 hypothetical protein; Provisional
Probab=22.30 E-value=4.1e+02 Score=21.18 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~ 217 (360)
.++|...++=.+..|+.+.+.+.+....+.++.+.+..++.|+.
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666666666666666664
No 176
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.95 E-value=2.9e+02 Score=27.52 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=7.6
Q ss_pred HhhhHHhHHHHHhc
Q 018157 234 ALLDVADNLGRASS 247 (360)
Q Consensus 234 dLLpVlDnLERAl~ 247 (360)
.++.-+..+++.+.
T Consensus 255 ~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 255 ELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444556666655
No 177
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=21.81 E-value=4.8e+02 Score=22.75 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (360)
Q Consensus 171 ~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~ 217 (360)
..|.++|.+.-.+++..+..++.+......+..-++|.+...++-+.
T Consensus 29 K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 29 KTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444333
No 178
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.72 E-value=4.1e+02 Score=22.25 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 185 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (360)
Q Consensus 185 Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE 219 (360)
..++..+.++.+.++-+-.-+.++..||+-|-+-|
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkne 63 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33456666777777777778888999998776655
No 179
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.70 E-value=2e+02 Score=26.08 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 182 KEREELLMAKNEEMKQMQDKVLRSFAEM 209 (360)
Q Consensus 182 ~e~Ee~Le~l~~eleelkDk~lR~~AEf 209 (360)
++++++|++.+.+++.++.+...+..||
T Consensus 164 ~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 164 EKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333334444444444444444444443
No 180
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.53 E-value=5.2e+02 Score=26.53 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 179 KLLKEREELLMAKNEEMKQMQDK------VLRSFAEMENVKDRTIREAENSKK 225 (360)
Q Consensus 179 k~l~e~Ee~Le~l~~eleelkDk------~lR~~AEfEN~RKR~~rE~e~akk 225 (360)
+.++.+++++.+++++++++.++ ..+...+.++-....+++++++..
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666677777777664 445555666655666666555443
No 181
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=21.51 E-value=4.7e+02 Score=27.93 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAE 208 (360)
Q Consensus 176 EL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AE 208 (360)
-+.+.+.++|.+|..++++...+.+...+..|.
T Consensus 45 ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 45 AIKAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666777777777776666664443
No 182
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.46 E-value=5.2e+02 Score=22.12 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 213 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~R 213 (360)
...+|-..+.++++.+..+-+++.+|+..+..+..|-..++
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888887777655444
No 183
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=21.43 E-value=5.3e+02 Score=22.23 Aligned_cols=23 Identities=22% Similarity=0.162 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018157 202 VLRSFAEMENVKDRTIREAENSK 224 (360)
Q Consensus 202 ~lR~~AEfEN~RKR~~rE~e~ak 224 (360)
+....+.++.-+..+++++..+.
T Consensus 89 l~~~e~sw~~qk~~le~e~~~~~ 111 (132)
T PF07926_consen 89 LEESEASWEEQKEQLEKELSELE 111 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433
No 184
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.36 E-value=5.8e+02 Score=23.73 Aligned_cols=38 Identities=5% Similarity=0.073 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (360)
Q Consensus 179 k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~ 216 (360)
..++++...++.+++++..+..++.-..-||+-+...+
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555444444444444443333
No 185
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=21.26 E-value=4.8e+02 Score=21.59 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=0.0
Q ss_pred cchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 018157 165 DSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL-RSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNL 242 (360)
Q Consensus 165 ~~~~e~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~l-R~~AEfEN~RKR~~rE~e~akk~Aie~flkdLLpVlDnL 242 (360)
+...+......+...+..+.+..+...+.+..++.+... .+.+..+..+...+++.+.....+...+-..--.+...|
T Consensus 37 ~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l 115 (132)
T PF00430_consen 37 SELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKEL 115 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 186
>PRK00295 hypothetical protein; Provisional
Probab=21.17 E-value=4.1e+02 Score=20.82 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 174 ~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
.++|...++-.+..++.+.+.+......+.++...+..++.|+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466767777777778888777777777777777888888777654
No 187
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.79 E-value=3.4e+02 Score=20.61 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=16.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL 203 (360)
Q Consensus 170 ~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~l 203 (360)
..+|.+||...++-+... .+.||+++..+|.
T Consensus 6 k~ls~~eL~~rl~~LD~~---ME~Eieelr~RY~ 36 (49)
T PF11629_consen 6 KFLSYEELQQRLASLDPE---MEQEIEELRQRYQ 36 (49)
T ss_dssp GGS-HHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhCCHH---HHHHHHHHHHHHH
Confidence 356778877666665432 3345555544443
No 188
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.74 E-value=1.5e+03 Score=27.10 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=29.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (360)
Q Consensus 170 ~~ls~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e~ak 224 (360)
.....+++.+.+.+++....+.++.+++++.++.++.-...-..+++.+-..+..
T Consensus 666 le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~ 720 (1074)
T KOG0250|consen 666 LEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMT 720 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555666666666666666665555555544444333
No 189
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.68 E-value=7.5e+02 Score=23.65 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 221 (360)
Q Consensus 186 e~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e 221 (360)
.+...+..++..|++..-++.++++.+++|+..=..
T Consensus 95 kE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 95 KEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 333445667788888888999999999888865433
No 190
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.53 E-value=2.1e+02 Score=22.90 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018157 198 MQDKVLRSFAEMENVKDRTI 217 (360)
Q Consensus 198 lkDk~lR~~AEfEN~RKR~~ 217 (360)
+.+++..++++++.+++.+.
T Consensus 70 l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 70 LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44444444555555544443
No 191
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.52 E-value=4.6e+02 Score=21.94 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (360)
Q Consensus 184 ~Ee~Le~l~~eleelkDk~lR~~AEfEN~RKR~~r 218 (360)
++..++.++..++.+..+..++...+.+..+.++.
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666666666666666666665543
No 192
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.49 E-value=3e+02 Score=24.96 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEe
Q 018157 271 SLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVL 327 (360)
Q Consensus 271 sl~eGVeMI~kqL~kvL~k~GVe~Ie~vGepFDP~lHEAV~~v~s~e~~~gtVveVv 327 (360)
.+.+-++.+...+...+.+.||.++++-++ -=-.+-=++... ++..+|.|+.-+
T Consensus 64 ~~~~~~~~l~~~~~~~~~kvgvvRYnAF~d-mGg~LSFslAlL--D~~~nGvVltsI 117 (151)
T PF14584_consen 64 ELEKRIEELEEKLRNCVQKVGVVRYNAFED-MGGDLSFSLALL--DDNNNGVVLTSI 117 (151)
T ss_pred HHHHHHHHHHHHHHhccceEEEEEccCccc-ccccceeeeEEE--eCCCCEEEEEee
Confidence 355666777888999999999999998332 111233344444 345677777654
No 193
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.44 E-value=3.8e+02 Score=26.78 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 221 (360)
Q Consensus 187 ~Le~l~~eleelkDk~lR~~AEfEN~RKR~~rE~e 221 (360)
.++..+.+++.+.+.+.+..+++..++.|+..-+.
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~ 235 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEVKEIKERITEMKG 235 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777777777777654333
No 194
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.22 E-value=3.8e+02 Score=21.50 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018157 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 209 (360)
Q Consensus 173 s~dEL~k~l~e~Ee~Le~l~~eleelkDk~lR~~AEf 209 (360)
+.+++.+...++...+..++.++.+++..+..+..++
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555566666666666666666665555443
No 195
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.03 E-value=5.7e+02 Score=25.40 Aligned_cols=11 Identities=9% Similarity=-0.136 Sum_probs=5.1
Q ss_pred hCCCeeeCCCC
Q 018157 289 KFGVEKFDPIN 299 (360)
Q Consensus 289 k~GVe~Ie~vG 299 (360)
-+|+.-+...|
T Consensus 291 ~~gw~~~~~~~ 301 (325)
T PF08317_consen 291 LTGWKIVSISG 301 (325)
T ss_pred HHCcEEEEEeC
Confidence 34555544444
Done!