Your job contains 1 sequence.
>018159
MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS
EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE
EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC
SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN
ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK
ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFVL
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018159
(360 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 1203 2.4e-122 1
TAIR|locus:2083248 - symbol:AT3G52660 species:3702 "Arabi... 870 4.7e-87 1
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein... 415 5.3e-41 2
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 417 4.8e-39 1
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 421 7.6e-39 1
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 415 7.8e-39 1
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein... 415 8.4e-39 1
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 414 9.9e-39 1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 413 1.3e-38 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 413 1.3e-38 1
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc... 415 1.6e-38 1
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r... 415 1.6e-38 1
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein... 415 1.6e-38 1
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r... 415 1.6e-38 1
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 414 1.8e-38 1
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 414 1.9e-38 1
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 414 2.3e-38 1
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 413 2.4e-38 1
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ... 413 2.4e-38 1
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 414 2.9e-38 1
DICTYBASE|DDB_G0282293 - symbol:rnpA "putative RNA bindin... 379 3.4e-38 2
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r... 402 2.8e-37 1
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei... 400 7.2e-37 1
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 402 8.3e-37 1
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 393 3.1e-36 1
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 388 5.7e-36 1
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ... 386 1.8e-35 1
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 386 2.0e-35 1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 384 3.0e-35 1
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 384 3.0e-35 1
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 384 3.3e-35 1
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 384 3.3e-35 1
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 384 3.3e-35 1
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ... 378 6.5e-35 1
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"... 374 1.7e-34 1
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 377 1.9e-34 1
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"... 373 2.2e-34 1
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"... 373 2.2e-34 1
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized... 373 2.2e-34 1
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro... 373 2.2e-34 1
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro... 373 2.2e-34 1
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"... 373 2.2e-34 1
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein... 373 2.2e-34 1
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"... 373 2.2e-34 1
ZFIN|ZDB-GENE-061013-298 - symbol:rbm46 "RNA binding moti... 365 1.5e-33 1
TAIR|locus:2042366 - symbol:AT2G44710 species:3702 "Arabi... 357 2.8e-33 2
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"... 367 2.8e-33 1
ZFIN|ZDB-GENE-030131-9612 - symbol:si:ch211-241e15.2 "si:... 367 2.9e-33 1
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"... 362 3.2e-33 1
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd... 359 2.5e-32 1
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ... 352 3.7e-32 1
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"... 356 4.5e-32 1
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"... 356 4.5e-32 1
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 355 5.9e-32 1
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 355 5.9e-32 1
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 352 8.5e-32 1
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 353 9.6e-32 1
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 352 1.2e-31 1
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 352 1.3e-31 1
TAIR|locus:2146564 - symbol:AT5G28390 species:3702 "Arabi... 316 2.4e-28 1
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"... 312 6.4e-28 1
UNIPROTKB|F1LM17 - symbol:F1LM17 "Uncharacterized protein... 279 3.7e-24 1
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 276 1.2e-23 1
UNIPROTKB|Q5T0W7 - symbol:A1CF "APOBEC1 complementation f... 270 1.8e-23 1
UNIPROTKB|D6RBS9 - symbol:RBM47 "RNA-binding protein 47" ... 247 4.9e-21 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 252 1.3e-20 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 252 1.3e-20 1
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 212 2.6e-20 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 247 4.4e-20 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 245 5.9e-20 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 245 7.2e-20 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 245 7.2e-20 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 244 8.8e-20 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 244 9.6e-20 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 244 9.7e-20 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 236 2.3e-19 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 236 6.7e-19 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 236 7.4e-19 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 234 1.2e-18 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 230 3.3e-18 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 232 5.5e-18 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 231 9.5e-18 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 231 9.5e-18 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 231 9.7e-18 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 230 1.8e-17 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 229 2.7e-17 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 228 3.5e-17 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 228 4.0e-17 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 228 4.0e-17 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 228 4.0e-17 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 228 4.0e-17 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 228 4.1e-17 1
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 177 4.1e-17 2
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 223 5.2e-17 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 226 8.9e-17 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 217 9.0e-17 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 226 9.0e-17 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 220 9.8e-17 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 206 1.2e-16 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 224 1.9e-16 1
WARNING: Descriptions of 1287 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
Identities = 216/298 (72%), Positives = 269/298 (90%)
Query: 55 SKAGASE--KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIG 112
+K G E +++ AE + N D +++EKP + + +++++K++ LL+LPP+GSEVFIG
Sbjct: 62 TKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIG 121
Query: 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172
GLP+D EEDLRDLCE IG++FEVRLMKD++SG+SKG+AFV+F++K+ A+KAI+ELHSKE
Sbjct: 122 GLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKE 181
Query: 173 LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 232
KGKTIRCSLSETKNRLFIGN+PKNWTEDEFRKVIEDVGPGVE IELIKDP N +RNRGF
Sbjct: 182 FKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGF 241
Query: 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPD 292
+FVLYYNNACADYSRQKM+++NFKL+GN PT++WADPKS+P+HSAAA+QVKALYVKNIP+
Sbjct: 242 AFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPE 301
Query: 293 NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
NTSTE++KELFQRHGEVTK+V PPGK GKRDFGF+HYAERSSALKAVKDTE+YE++G+
Sbjct: 302 NTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQ 359
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 154/294 (52%), Positives = 225/294 (76%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVG---EDEKDKHAQLLALPPNGSEVFIGGLPKD 117
E+++ E ++ VEEEE+ +V E+EK +H +LLALPP+GSEV++GG+P D
Sbjct: 43 EEEEIEEIEEEIEEEVEVEEEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTD 102
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
A+E DL+ C IG+V EVR+M++K+SG+ KG+AFV+FRSK+ A +AID L++ + +GK
Sbjct: 103 ATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKR 162
Query: 178 IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
I+CS ++ K+RLF+GNVP+NW E + +K +GPGV+ +EL K+PQN RNRGF+F+ Y
Sbjct: 163 IKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222
Query: 238 YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTE 297
YN+ACA+YS+QKM N +FKLD N PT+SWA+ +S ++ASQVKALY+KN+P + + E
Sbjct: 223 YNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQE 282
Query: 298 KIKELFQRHGEVTKVVMPPGKSGKRD--FGFIHYAERSSALKAVKDTEKYEIDG 349
++K LF+ HG++ KVV+PP K GK D +GF+HYAER+S ++A+K+TE+YEIDG
Sbjct: 283 RLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDG 336
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 415 (151.1 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 85/249 (34%), Positives = 150/249 (60%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V K K D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGK 350
EI+G+
Sbjct: 394 MNGKEIEGE 402
Score = 43 (20.2 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 68 ANRNDDDTPHVEEEEKP--TASVGEDEKDKHAQLLALPPNGSE 108
AN+ + + ++EEE+P T+SV E K LP +E
Sbjct: 2 ANQVNGNAVQLKEEEEPMDTSSVNHTEHYKTLIEAGLPQKVAE 44
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 86/249 (34%), Positives = 152/249 (61%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ ++ E++ GK I +S NRLF+G++PK+ T+D+ + V G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 279 QPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V K K D+ FIH+ ER A+KA+ +
Sbjct: 338 VKVLFVRNLASTVTEELLEKTFCQFGKLERV-----KKLK-DYAFIHFEERDGAVKALAE 391
Query: 342 TEKYEIDGK 350
+++G+
Sbjct: 392 LHGKDLEGE 400
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 421 (153.3 bits), Expect = 7.6e-39, P = 7.6e-39
Identities = 89/253 (35%), Positives = 154/253 (60%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTM-S 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V K K D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV-----KKIK-DYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEIDGKSHL 353
EI G S++
Sbjct: 392 GLNGKEI-GASNI 403
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 85/249 (34%), Positives = 150/249 (60%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 308
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V K K D+ F+H+ +R +A+KA+ +
Sbjct: 309 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 362
Query: 342 TEKYEIDGK 350
EI+G+
Sbjct: 363 MNGKEIEGE 371
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 415 (151.1 bits), Expect = 8.4e-39, P = 8.4e-39
Identities = 85/249 (34%), Positives = 150/249 (60%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V K K D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGK 350
EI+G+
Sbjct: 394 MNGKEIEGE 402
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 88/251 (35%), Positives = 156/251 (62%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
VK L+V+N+ NT TE+I E F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 337 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 389
Query: 341 DTEKYEIDGKS 351
+ +++G++
Sbjct: 390 EMNGKDLEGEN 400
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 88/251 (35%), Positives = 156/251 (62%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246
Query: 282 VKALYVKNIPDNTSTEKIKEL-FQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
VK L+V+N+ NT TE+I E F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 247 VKVLFVRNLA-NTVTEEILEKSFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 299
Query: 341 DTEKYEIDGKS 351
+ +++G++
Sbjct: 300 EMNGKDLEGEN 310
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 88/251 (35%), Positives = 156/251 (62%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246
Query: 282 VKALYVKNIPDNTSTEKIKEL-FQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
VK L+V+N+ NT TE+I E F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 247 VKVLFVRNLA-NTVTEEILEKSFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 299
Query: 341 DTEKYEIDGKS 351
+ +++G++
Sbjct: 300 EMNGKDLEGEN 310
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 415 (151.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 85/249 (34%), Positives = 150/249 (60%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V K K D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGK 350
EI+G+
Sbjct: 394 MNGKEIEGE 402
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 415 (151.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 85/249 (34%), Positives = 150/249 (60%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V K K D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGK 350
EI+G+
Sbjct: 394 MNGKEIEGE 402
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 415 (151.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 85/249 (34%), Positives = 150/249 (60%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V K K D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGK 350
EI+G+
Sbjct: 394 MNGKEIEGE 402
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 415 (151.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 85/249 (34%), Positives = 150/249 (60%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V K K D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGK 350
EI+G+
Sbjct: 394 MNGKEIEGE 402
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 414 (150.8 bits), Expect = 1.8e-38, P = 1.8e-38
Identities = 88/251 (35%), Positives = 156/251 (62%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
VK L+V+N+ NT TE+I E F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 337 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 389
Query: 341 DTEKYEIDGKS 351
+ +++G++
Sbjct: 390 EMNGKDLEGEN 400
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 414 (150.8 bits), Expect = 1.9e-38, P = 1.9e-38
Identities = 88/251 (35%), Positives = 156/251 (62%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 162 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 221
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 222 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 281
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 282 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 340
Query: 282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
VK L+V+N+ NT TE+I E F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 341 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 393
Query: 341 DTEKYEIDGKS 351
+ +++G++
Sbjct: 394 EMNGKDLEGEN 404
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 414 (150.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 88/251 (35%), Positives = 156/251 (62%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 351
Query: 282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
VK L+V+N+ NT TE+I E F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 352 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 404
Query: 341 DTEKYEIDGKS 351
+ +++G++
Sbjct: 405 EMNGKDLEGEN 415
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 413 (150.4 bits), Expect = 2.4e-38, P = 2.4e-38
Identities = 88/251 (35%), Positives = 156/251 (62%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 157 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 216
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 217 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 276
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 277 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 335
Query: 282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
VK L+V+N+ NT TE+I E F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 336 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 388
Query: 341 DTEKYEIDGKS 351
+ +++G++
Sbjct: 389 EMNGKDLEGEN 399
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 413 (150.4 bits), Expect = 2.4e-38, P = 2.4e-38
Identities = 88/251 (35%), Positives = 156/251 (62%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKEL-FQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
VK L+V+N+ NT TE+I E F + G++ +V K K D+ FIH+ ER A+KA++
Sbjct: 337 VKVLFVRNLA-NTVTEEILEKSFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 389
Query: 341 DTEKYEIDGKS 351
+ +++G++
Sbjct: 390 EMNGKDLEGEN 400
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 414 (150.8 bits), Expect = 2.9e-38, P = 2.9e-38
Identities = 84/249 (33%), Positives = 151/249 (60%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F SK+ A+
Sbjct: 189 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 248
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 249 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGLVDVILYH 308
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 309 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 367
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V K K D+ F+H+ +R +A+KA+ +
Sbjct: 368 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMNE 421
Query: 342 TEKYEIDGK 350
EI+G+
Sbjct: 422 MNGKEIEGE 430
>DICTYBASE|DDB_G0282293 [details] [associations]
symbol:rnpA "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0282293 GO:GO:0000166
EMBL:AAFI02000047 GenomeReviews:CM000152_GR Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AY392444 RefSeq:XP_640243.1
ProteinModelPortal:Q6TMI9 EnsemblProtists:DDB0214833 GeneID:8623503
KEGG:ddi:DDB_G0282293 InParanoid:Q6TMI9 OMA:LTVNWSD Uniprot:Q6TMI9
Length = 551
Score = 379 (138.5 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 74/195 (37%), Positives = 122/195 (62%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+E+F GG+ K +EE+L ++ D V E+RLMKDK +GESKGF FV F + +
Sbjct: 92 NEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRNV 151
Query: 165 IDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
ID+L+ K +KGK I SE K +LFIGN+PK+ ++++F + + G+E+I+ + P
Sbjct: 152 IDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSPD 211
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPKST---PDHSAAA 279
P++NRGF+F+ Y ++ AD +R+ + + KL T T++W+DP T P +
Sbjct: 212 QPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPLE 271
Query: 280 S-QVKALYVKNIPDN 293
+ ++KA+Y++N+P N
Sbjct: 272 NKEIKAIYIRNLPLN 286
Score = 47 (21.6 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 319 SGKRDFGFIHYAERSSA--LKAVKDTEKYEIDGK 350
+ KRD+ F+H R A + + + + I+GK
Sbjct: 356 NSKRDYAFVHLKTRELAEEILRIHEEKPININGK 389
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 402 (146.6 bits), Expect = 2.8e-37, P = 2.8e-37
Identities = 82/244 (33%), Positives = 147/244 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + E +++ F G++ +V K K D+ F+H+ +R +A+KA+ + E
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDEMNGKE 360
Query: 347 IDGK 350
I+G+
Sbjct: 361 IEGE 364
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 74/287 (25%), Positives = 127/287 (44%)
Query: 68 ANRNDDDTPHVEEEEKP--TASVGEDEKDKHAQLLALPPNGSE----VFIGGLPK--DAS 119
AN+ + + ++EEE+P T+SV E K LP +E +F GL D
Sbjct: 2 ANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLD 61
Query: 120 EEDLRDLCEPIGDVFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
E + D + + +++ KES S V +S F + +E +G +
Sbjct: 62 ERAI-DALREFNEEGALSVLQQFKESDLSH----VQNKSA-FLCGVMKTYRQREKQGSKV 115
Query: 179 RCSLS---ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFV 235
+ S E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+
Sbjct: 116 QESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFI 173
Query: 236 LYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
+ C + Q+ + KL + K + A+ L+V +IP N +
Sbjct: 174 TF----CGKEAAQEAV----KL---CDSYEIRPGKHLGVCISVANN--RLFVGSIPKNKT 220
Query: 296 TEKIKELFQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKA 338
E I E F + E + V++ P K R F F+ Y + SA +A
Sbjct: 221 KENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 267
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 400 (145.9 bits), Expect = 7.2e-37, P = 7.2e-37
Identities = 86/239 (35%), Positives = 147/239 (61%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK L+V+N+ NT TE+I E F + G++ +V K K D+ FIH+ ER A+K +
Sbjct: 337 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKVI 388
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 402 (146.6 bits), Expect = 8.3e-37, P = 8.3e-37
Identities = 85/259 (32%), Positives = 157/259 (60%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L E G ++++RLM D SG ++G+AF++F +KE
Sbjct: 220 AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEA 279
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 280 AQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 339
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 340 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 399
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ ++ + E +++ F + G + +V K K D+ F+H+ +R A+KA+
Sbjct: 400 -KVKVLFVRNLANSVTEEILEKAFGQFGNLERV-----KKLK-DYAFVHFNDRDGAVKAL 452
Query: 340 KDTEKYEIDGKSHLHFPVF 358
+ E++G+ H+ VF
Sbjct: 453 TEMNGKELEGE-HIEI-VF 469
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 393 (143.4 bits), Expect = 3.1e-36, P = 3.1e-36
Identities = 90/253 (35%), Positives = 147/253 (58%)
Query: 101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 89/253 (35%), Positives = 147/253 (58%)
Query: 101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 386 (140.9 bits), Expect = 1.8e-35, P = 1.8e-35
Identities = 89/253 (35%), Positives = 148/253 (58%)
Query: 101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +++
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNRQ 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + +RNRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKMLDG 293
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 386 (140.9 bits), Expect = 2.0e-35, P = 2.0e-35
Identities = 87/250 (34%), Positives = 146/250 (58%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 384 (140.2 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 89/253 (35%), Positives = 147/253 (58%)
Query: 101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 42 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKV 100
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 101 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 160
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 161 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 220
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 221 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 273
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 274 EAMKALNGKVLDG 286
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 384 (140.2 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 89/253 (35%), Positives = 147/253 (58%)
Query: 101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKL 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 384 (140.2 bits), Expect = 3.3e-35, P = 3.3e-35
Identities = 89/253 (35%), Positives = 147/253 (58%)
Query: 101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKV 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+
Sbjct: 228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280
Query: 337 KAVKDTEKYEIDG 349
+A+K +DG
Sbjct: 281 EAMKALNGKVLDG 293
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 384 (140.2 bits), Expect = 3.3e-35, P = 3.3e-35
Identities = 86/250 (34%), Positives = 146/250 (58%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 384 (140.2 bits), Expect = 3.3e-35, P = 3.3e-35
Identities = 86/250 (34%), Positives = 146/250 (58%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 85/250 (34%), Positives = 145/250 (58%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ A+
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAR 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A+ A+
Sbjct: 230 VKILYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVHAM 283
Query: 340 KDTEKYEIDG 349
K +DG
Sbjct: 284 KALNGKVLDG 293
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 90/252 (35%), Positives = 143/252 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGSVERV------KKLRDYAFVHFFNREDAVAAM 288
Query: 340 KDTEKYEIDGKS 351
IDG S
Sbjct: 289 SVMNGKCIDGAS 300
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 377 (137.8 bits), Expect = 1.9e-34, P = 1.9e-34
Identities = 85/250 (34%), Positives = 143/250 (57%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDF-NGNNRGYAFVTFSTKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y + A +R+K+L +L G+ + WA+P+ D A+
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMAT- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E I++ F + G V +V RD+ F+H+++R A+ A+
Sbjct: 230 VKILYVRNLMLPTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFSQREDAINAM 283
Query: 340 KDTEKYEIDG 349
IDG
Sbjct: 284 NALNGKVIDG 293
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 90/252 (35%), Positives = 143/252 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288
Query: 340 KDTEKYEIDGKS 351
IDG S
Sbjct: 289 SVMNGKCIDGAS 300
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 90/252 (35%), Positives = 143/252 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288
Query: 340 KDTEKYEIDGKS 351
IDG S
Sbjct: 289 SVMNGKCIDGAS 300
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 90/252 (35%), Positives = 143/252 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288
Query: 340 KDTEKYEIDGKS 351
IDG S
Sbjct: 289 SVMNGKCIDGAS 300
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 90/252 (35%), Positives = 143/252 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288
Query: 340 KDTEKYEIDGKS 351
IDG S
Sbjct: 289 SVMNGKCIDGAS 300
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 90/252 (35%), Positives = 143/252 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288
Query: 340 KDTEKYEIDGKS 351
IDG S
Sbjct: 289 SVMNGKCIDGAS 300
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 90/252 (35%), Positives = 143/252 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288
Query: 340 KDTEKYEIDGKS 351
IDG S
Sbjct: 289 SVMNGKCIDGAS 300
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 90/252 (35%), Positives = 143/252 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAM 288
Query: 340 KDTEKYEIDGKS 351
IDG S
Sbjct: 289 SVMNGKCIDGAS 300
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 90/252 (35%), Positives = 143/252 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288
Query: 340 KDTEKYEIDGKS 351
IDG S
Sbjct: 289 SVMNGKCIDGAS 300
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 85/250 (34%), Positives = 144/250 (57%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + ++E A+
Sbjct: 41 PPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQ 99
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+AI L + E++ GK I +S RLFIG++PK+ ++E ++ + V GV + +
Sbjct: 100 RAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYP 159
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ F+L G+T + WA+P+ D +
Sbjct: 160 SAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETM-QR 218
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
V+ LYV+N+ +T+ E ++ F + G V +V D+ FIH+ R AL A+
Sbjct: 219 VRVLYVRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTAL 272
Query: 340 KDTEKYEIDG 349
+ IDG
Sbjct: 273 ESMNGKVIDG 282
>TAIR|locus:2042366 [details] [associations]
symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
Uniprot:Q8RWQ1
Length = 809
Score = 357 (130.7 bits), Expect = 2.8e-33, Sum P(2) = 2.8e-33
Identities = 84/290 (28%), Positives = 158/290 (54%)
Query: 63 DQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGS-EVFIGGLPKDASEE 121
D + + + DDD H EE K +V +E++ H L E+F+G L K ASEE
Sbjct: 169 DGAEDLDSEDDDDDHAIEEVKHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEE 228
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181
DL+ + +G+V EVR++K+ ++ +SKG AF+ F + E AK+A+ EL S + GK +
Sbjct: 229 DLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVT 288
Query: 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNN 240
S+ + LF+GN+ K WT + R+ ++ G ++ I L++D N + NRG++F+ + +
Sbjct: 289 ASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSR 348
Query: 241 ACADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKI 299
+ A + ++++ + P +S+ D + A QVK +++ + + + E++
Sbjct: 349 SDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMA-QVKTIFIDGLLPSWNEERV 407
Query: 300 KELFQRHGEVTKVVMPPGK-SGKR-DFGFIHYAERSSALKAVKDTEKYEI 347
++L + +G++ KV + S +R DFGF+ + +A+ K E+
Sbjct: 408 RDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSEL 457
Score = 40 (19.1 bits), Expect = 2.8e-33, Sum P(2) = 2.8e-33
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGE 90
+ GA+ + + PHVE + ++GE
Sbjct: 8 RGGAARRGGRLTRSALKAQNPHVESSHDESVNIGE 42
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 367 (134.2 bits), Expect = 2.8e-33, P = 2.8e-33
Identities = 81/248 (32%), Positives = 141/248 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ T+ + IK++F G+ + K RD+ F+H+ R A+ A+ +
Sbjct: 245 VKILYVRNLMIETTEDTIKKVF---GQFNPGCVERVKK-IRDYAFVHFTTREDAIHAMNN 300
Query: 342 TEKYEIDG 349
E++G
Sbjct: 301 LNGVELEG 308
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 367 (134.2 bits), Expect = 2.9e-33, P = 2.9e-33
Identities = 81/248 (32%), Positives = 141/248 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 78 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 136
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 137 RAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 196
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 197 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 255
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ TS E +++ F G+ + K RD+ F+H+A R A+ A+ +
Sbjct: 256 VKILYVRNLMIETSEEILRQTF---GQFNPGCVERVKK-IRDYAFVHFASRDDAVVAMDN 311
Query: 342 TEKYEIDG 349
EI+G
Sbjct: 312 LNGTEIEG 319
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 87/250 (34%), Positives = 144/250 (57%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P++ E++L L E G ++E+RLM + SGE++GFAFV + +KE A+
Sbjct: 57 PPRGCEVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQ 115
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ G+ I +S RLFIG +P+ ++E K ++ + GV + +
Sbjct: 116 LAIKILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCP 175
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
D + ++NRGF+FV Y ++ A +R+++L F+L G + WA P+ D + +
Sbjct: 176 DATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD-AETMRR 234
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ +T+ + IK F + +VV K RD+ F+H+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEDTIKAEFNKFKP--RVVERVKKL--RDYAFVHFYNREDAVAAMSI 290
Query: 342 TEKYEIDGKS 351
IDG S
Sbjct: 291 MNGKCIDGAS 300
>WB|WBGene00002000 [details] [associations]
symbol:hrp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
Length = 611
Score = 359 (131.4 bits), Expect = 2.5e-32, P = 2.5e-32
Identities = 81/246 (32%), Positives = 136/246 (55%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+++G +P D E+ L L E G ++++RLM D SG S+G+AFV++ +KE A A
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAA 258
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
E+ GK ++ ++S RLFIGN+PK ++DE + ++ GV + + P
Sbjct: 259 KTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVPD 318
Query: 225 NPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
N +NRGF FV + ++ A ++K+ + + WA+ + PD S+VK
Sbjct: 319 NEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDEDTM-SKVK 377
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LY++NI + + EK+ ELF+ + + +V K K D+ FIH+ ER LKA+++
Sbjct: 378 VLYIRNIKEAVTEEKLNELFKEYASLDRV-----KKVK-DYAFIHFNERDDCLKAMEEWN 431
Query: 344 KYEIDG 349
E++G
Sbjct: 432 GKELEG 437
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 80/248 (32%), Positives = 139/248 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ T+ + IK+ F G+ + K RD+ F+H+ R A+ A+ +
Sbjct: 245 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMNN 300
Query: 342 TEKYEIDG 349
E++G
Sbjct: 301 LNGTELEG 308
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 356 (130.4 bits), Expect = 4.5e-32, P = 4.5e-32
Identities = 81/248 (32%), Positives = 140/248 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ T+ + IK+ F G+ + K RD+ F+H+A R A+ A+ +
Sbjct: 245 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVHAMNN 300
Query: 342 TEKYEIDG 349
E++G
Sbjct: 301 LNGTELEG 308
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 356 (130.4 bits), Expect = 4.5e-32, P = 4.5e-32
Identities = 81/248 (32%), Positives = 140/248 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ T+ + IK+ F G+ + K RD+ F+H+A R A+ A+ +
Sbjct: 245 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVHAMNN 300
Query: 342 TEKYEIDG 349
E++G
Sbjct: 301 LNGTELEG 308
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 355 (130.0 bits), Expect = 5.9e-32, P = 5.9e-32
Identities = 81/248 (32%), Positives = 140/248 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK
Sbjct: 69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAK 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ T+ + IK+ F G+ + K RD+ F+H+A R A+ A+
Sbjct: 247 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVLAMNS 302
Query: 342 TEKYEIDG 349
E++G
Sbjct: 303 LNGTELEG 310
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 355 (130.0 bits), Expect = 5.9e-32, P = 5.9e-32
Identities = 81/248 (32%), Positives = 140/248 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK
Sbjct: 69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAK 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ T+ + IK+ F G+ + K RD+ F+H+A R A+ A+
Sbjct: 247 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVLAMNS 302
Query: 342 TEKYEIDG 349
E++G
Sbjct: 303 LNGTELEG 310
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 352 (129.0 bits), Expect = 8.5e-32, P = 8.5e-32
Identities = 80/248 (32%), Positives = 139/248 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 29 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 87
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 88 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 147
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 148 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 206
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ T+ + IK+ F G+ + K RD+ F+H+ R A+ A+ +
Sbjct: 207 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMNN 262
Query: 342 TEKYEIDG 349
E++G
Sbjct: 263 LNGTELEG 270
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 353 (129.3 bits), Expect = 9.6e-32, P = 9.6e-32
Identities = 81/248 (32%), Positives = 138/248 (55%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ T+ E IK+ F G+ + K RD+ F+H+ R A+ A+ +
Sbjct: 245 VKILYVRNLMIETTEETIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMNN 300
Query: 342 TEKYEIDG 349
E++G
Sbjct: 301 LNGTELEG 308
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 352 (129.0 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 81/248 (32%), Positives = 137/248 (55%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ T+ E IK F G+ + K RD+ F+H+ R A+ A+ +
Sbjct: 245 VKILYVRNLMIETTEETIKRSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMNN 300
Query: 342 TEKYEIDG 349
E++G
Sbjct: 301 LNGTELEG 308
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 352 (129.0 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 80/248 (32%), Positives = 139/248 (56%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ T+ + IK+ F G+ + K RD+ F+H+ R A+ A+ +
Sbjct: 245 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMNN 300
Query: 342 TEKYEIDG 349
E++G
Sbjct: 301 LNGTELEG 308
>TAIR|locus:2146564 [details] [associations]
symbol:AT5G28390 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530379 RefSeq:NP_198191.2 UniGene:At.49421
ProteinModelPortal:F4K739 SMR:F4K739 EnsemblPlants:AT5G28390.1
GeneID:832924 KEGG:ath:AT5G28390 PhylomeDB:F4K739 Uniprot:F4K739
Length = 180
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 55/105 (52%), Positives = 82/105 (78%)
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
M N +FKLD N PT+SWA+ +S + ++ASQVKALY+KN+P + + E++K LF+ HG++
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 310 TKVVMPPGKSGKRD--FGFIHYAERSSALKAVKDTEKYEIDGKSH 352
KVV+PP K GK D +GF+HYAER+S ++A+K+TE+YEID ++
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDASAY 105
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 79/233 (33%), Positives = 132/233 (56%)
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTI 178
E++L L E G ++E+RLM + SGE++GFAFV + +KE A+ AI L++ E++ G+ I
Sbjct: 3 EDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFI 61
Query: 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238
+S RLFIG +P+ ++E K ++ + GV + + D + ++NRGF+FV Y
Sbjct: 62 GVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYE 121
Query: 239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
++ A +R+++L F+L G + WA P+ D + +VK LYV+N+ +T+ +
Sbjct: 122 SHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD-AETMRRVKVLYVRNLMISTTEDT 180
Query: 299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
IK F + +VV K RD+ F+H+ R A+ A+ IDG S
Sbjct: 181 IKAEFNKFKP--RVVERVKKL--RDYAFVHFYNREDAVAAMSIMNGKCIDGAS 229
>UNIPROTKB|F1LM17 [details] [associations]
symbol:F1LM17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
Length = 440
Score = 279 (103.3 bits), Expect = 3.7e-24, P = 3.7e-24
Identities = 74/236 (31%), Positives = 125/236 (52%)
Query: 116 KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK- 174
+D E++L L E G V+ +RLM D G+++G+AF++F KE A+ + S E++
Sbjct: 3 RDLYEDELVPLFEKAGPVWSLRLMMDP-LGQNRGYAFITFCGKEAAQGLVKPCDSCEIRP 61
Query: 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
GK + S N F+G PKN T++ F + V G+ I L P + +N GF F
Sbjct: 62 GKVLGVCFS-VANNTFVGFTPKNKTKENFEE-FSKVTEGLVGIILDHQPDDKKKNWGFCF 119
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
+ Y ++ A +R +++ + GN T+ ADP PD A +VK L+V+N+
Sbjct: 120 LEYEDHKSAAQARLWLMSGKV-VWGNVVTVERADPVEEPDPEGMA-KVKVLFVRNLATTV 177
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+ E +++ F + GE+ +V D+ F+H+ +R A+KAV + EI+G+
Sbjct: 178 TEEILEKSFSQFGELERV------KKLTDYAFVHFEDRE-AVKAVDEMNGKEIEGE 226
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 276 (102.2 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 59/185 (31%), Positives = 105/185 (56%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 183
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
+V+N+ + E +++ F G++ +V K K D+ F+H+ +R +A+KA+ +
Sbjct: 184 FVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDEMNGK 237
Query: 346 EIDGK 350
EI+G+
Sbjct: 238 EIEGE 242
>UNIPROTKB|Q5T0W7 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00657770 UniGene:Hs.282795 HGNC:HGNC:24086 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC
HOVERGEN:HBG051370 SMR:Q5T0W7 Ensembl:ENST00000414883
Uniprot:Q5T0W7
Length = 201
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 58/153 (37%), Positives = 95/153 (62%)
Query: 101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A PP G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKV 107
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
+ + ++NRGF+FV Y ++ A +R+K+L
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLL 200
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 53/150 (35%), Positives = 91/150 (60%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKML 251
+ +NRGF+FV Y ++ A +R+K++
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLM 215
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 252 (93.8 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 80/303 (26%), Positives = 145/303 (47%)
Query: 59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEK-DKHAQLLALPPNGSEVFIGGLPKD 117
A+E +Q E+ + EE+ A+ D+ ++ + + N + +++G L
Sbjct: 3 AAETNQLQESMEKLNIGSTTEEQSAAAATTTADQSAEEQGESSGVAENSASLYVGELNPS 62
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
+E L ++ PIG V +R+ +D S +S G+A+V++ E +KAI+EL+ ++G+
Sbjct: 63 VNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRP 122
Query: 178 IRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNP-SRNRGF 232
R S+ + R GN+ KN K + D I K + +++ F
Sbjct: 123 CRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCF 182
Query: 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVK 288
FV Y A+ + + N N L N + S D + ++KA +YVK
Sbjct: 183 GFVHYETAEAAEAAIE---NVNGMLL-NDREVFVGKHISKKDRESKFEEMKANFTNIYVK 238
Query: 289 NIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEI 347
NI N S E ++LF G++T + + + GK + FGF+++ + SA+KAV++ EI
Sbjct: 239 NIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEI 298
Query: 348 DGK 350
+G+
Sbjct: 299 NGQ 301
Score = 154 (59.3 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 31/95 (32%), Positives = 55/95 (57%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + SEE L P G + + L KD++ G+SKGF
Sbjct: 218 KKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GKSKGFG 276
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV+F E A KA++EL+ KE+ G+ I ++ K
Sbjct: 277 FVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKK 311
Score = 135 (52.6 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 49/196 (25%), Positives = 89/196 (45%)
Query: 171 KELKGKTIRCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
K + K E K +++ N+ N++E+ F K+ G + +I L KD S
Sbjct: 214 KHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-ITSIYLEKDQDGKS 272
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST------PDHSAAASQ 281
+ GF FV + ++ A + ++ LN +++G + A K + A +
Sbjct: 273 K--GFGFVNFEDHESAVKAVEE-LNDK-EINGQKIYVGRAQKKRERLEELKKQYEAVRLE 328
Query: 282 VKA------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
A L+VKN+ D +EK++E F+ G +T + ++GK + FGF+ +
Sbjct: 329 KLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEE 388
Query: 335 ALKAVKDTEKYEIDGK 350
A KA+ + I+GK
Sbjct: 389 ATKAITEMNTRMINGK 404
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + +P G + ++M D E+G+SKGF FV F + E A KAI
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAI 393
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++++ + GK + +L++ K+
Sbjct: 394 TEMNTRMINGKPLYVALAQRKD 415
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 252 (93.8 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 74/253 (29%), Positives = 126/253 (49%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 132 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAEMGAKAKE 190
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ +++KELF ++G+ V VM P GKS R FGF+ Y + A KA
Sbjct: 191 FTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKS--RGFGFVSYEKHEDANKA 248
Query: 339 VKDTEKYEIDGKS 351
V++ E++GK+
Sbjct: 249 VEEMNGTELNGKT 261
Score = 145 (56.1 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 30/97 (30%), Positives = 55/97 (56%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A++ A + V+I D ++ L++L + G V++M D +G+S+G
Sbjct: 175 KSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRG 233
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVS+ E A KA++E++ EL GKT+ ++ K
Sbjct: 234 FGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKK 270
Score = 125 (49.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 47/194 (24%), Positives = 90/194 (46%)
Query: 162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K + S++ + + E N ++I N + + +++ + G + +++++
Sbjct: 168 KVFVGRFKSRKEREAEMGAKAKEFTN-VYIKNFGDDMDDQRLKELFDKYGKTL-SVKVMT 225
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST--PDHSAAA 279
DP SR GF FV Y + A+ + ++M N +L+G T + A K +
Sbjct: 226 DPTGKSR--GFGFVSYEKHEDANKAVEEM-NGT-ELNGKTVFVGRAQKKMERQAELKRKF 281
Query: 280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
Q+K LY+KN+ D EK+++ F G +T KV++ G+S + FGF+
Sbjct: 282 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS--KGFGFV 339
Query: 328 HYAERSSALKAVKD 341
++ A KAV +
Sbjct: 340 CFSSPEEATKAVTE 353
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 212 (79.7 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 57/187 (30%), Positives = 108/187 (57%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +PK +EE++++L I ++ V L+K+K + E +G AFVS S+E A +AI+
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 167 ELH-SKELKGKT----IRCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+LH SK+ +G ++ + SE + ++LF+G +P+++ E++ R++ E G VE I
Sbjct: 63 QLHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGV-VEDIC 121
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPKSTPDHS 276
+++ P + S+ GF + ++N + S LN KLDG N + +AD +
Sbjct: 122 ILRGPNSESKGCGF---IKFDNRESALSAIATLNG-MKLDGSPNPLVVKFADTEKDKKKK 177
Query: 277 AAASQVK 283
Q++
Sbjct: 178 QKQQQIQ 184
Score = 170 (64.9 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 47/165 (28%), Positives = 88/165 (53%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G +PK++ E+E + + ++ +E++ LIK+ + + +G +FV + AD +
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIA-NIESVSLIKN-KTTNEPQGCAFVSVPSREEADRAI 61
Query: 248 QKMLNANFKLDG--NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+++ N+ K G N + +AD + AS+ L+V +P + E+I+ELF+
Sbjct: 62 EQLHNSK-KFQGVLNNLQVKYADS----EQEKLASK---LFVGMLPRSYEEEQIRELFEP 113
Query: 306 HGEVTKVVMPPG-KSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
HG V + + G S + GFI + R SAL A+ ++DG
Sbjct: 114 HGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDG 158
Score = 149 (57.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P GS +F+ +P S+ DL L + G V ++ DK +G SKGF FVS+ + A
Sbjct: 400 PQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANL 459
Query: 164 AIDELHSKELKGKTIRCSLSETKNR 188
AI LH + + GK ++ SL +T +
Sbjct: 460 AISNLHGQMMAGKKLKVSLKQTSGQ 484
Score = 85 (35.0 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
P + + Q L+V NIP+ S + LFQ++G V KV + + FGF
Sbjct: 389 PMGNKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGF 448
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+ Y +SA A+ + + GK
Sbjct: 449 VSYDNPASANLAISNLHGQMMAGK 472
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 247 (92.0 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 73/252 (28%), Positives = 125/252 (49%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ V VM P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKS--KGFGFVSFEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ +I+GK
Sbjct: 248 VEEMNGKDINGK 259
Score = 149 (57.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/97 (32%), Positives = 54/97 (55%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D +E L++L G V++M D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A KA++E++ K++ GK + ++ K
Sbjct: 233 FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKK 269
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 245 (91.3 bits), Expect = 5.9e-20, P = 5.9e-20
Identities = 78/284 (27%), Positives = 138/284 (48%)
Query: 81 EEKPTASVGEDEKDKH--AQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
E+ ++ +D+K ++ ++ + + +++G L SE L D+ PIG V +R+
Sbjct: 10 EQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRV 69
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLF---IGNV- 194
+D + S G+A+V+F E +KAI++L+ +KG+ R S+ L GN+
Sbjct: 70 CRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIF 129
Query: 195 PKNWTEDEFRKVIED---VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
KN D K + D V + + ++ D +N +++GF FV + A + L
Sbjct: 130 IKNLHPDIDNKALYDTFSVFGDILSSKIATD-EN-GKSKGFGFVHFEEEGAAKEAIDA-L 186
Query: 252 NANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHG 307
N L+G I A S + + + KA LYVKNI T+ E+ +ELF + G
Sbjct: 187 NGML-LNGQE--IYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFG 243
Query: 308 EVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+ + GK + FGF++Y + A+KAV+ E++G+
Sbjct: 244 PIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGE 287
Score = 141 (54.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 49/185 (26%), Positives = 87/185 (47%)
Query: 182 LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238
L ETK L++ N+ T+++F+++ GP + + L KD + +GF FV Y
Sbjct: 211 LEETKAHYTNLYVKNINSETTDEQFQELFAKFGP-IVSASLEKDADG--KLKGFGFVNYE 267
Query: 239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH------------SAAASQVKALY 286
+ A + LN + +L+G + A K+ H A Q L+
Sbjct: 268 KHEDA-VKAVEALNDS-ELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLF 325
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKY 345
VKN+ D+ EK++E F +G +T + ++GK + FGF+ ++ A KA+ + +
Sbjct: 326 VKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQ 385
Query: 346 EIDGK 350
+ GK
Sbjct: 386 IVAGK 390
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 25/95 (26%), Positives = 51/95 (53%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ +QL + + +++ + + ++E ++L G + L KD + G+ KGF F
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGF 263
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
V++ E A KA++ L+ EL G+ + ++ KN
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN 298
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 245 (91.3 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 71/250 (28%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGK 350
+ EI GK
Sbjct: 250 EMNGKEISGK 259
Score = 160 (61.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 33/97 (34%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269
Score = 118 (46.6 bits), Expect = 0.00052, P = 0.00052
Identities = 44/194 (22%), Positives = 89/194 (45%)
Query: 162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K + S++ + + E N ++I N + ++ +++ G + ++++++
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDENLKELFSQFGKTL-SVKVMR 224
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
DP S+ GF FV Y + A+ + ++M N ++ G + A K +
Sbjct: 225 DPSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQAELKRKF 280
Query: 280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
Q+K LY+KN+ D EK+++ F G +T KV++ G+S + FGF+
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338
Query: 328 HYAERSSALKAVKD 341
++ A KAV +
Sbjct: 339 CFSSPEEATKAVTE 352
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 245 (91.3 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 71/250 (28%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGK 350
+ EI GK
Sbjct: 250 EMNGKEISGK 259
Score = 159 (61.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 33/97 (34%), Positives = 56/97 (57%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269
Score = 118 (46.6 bits), Expect = 0.00052, P = 0.00052
Identities = 44/194 (22%), Positives = 89/194 (45%)
Query: 162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K + S++ + + E N ++I N + ++ +++ G + ++++++
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDESLKELFSQFGKTL-SVKVMR 224
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
DP S+ GF FV Y + A+ + ++M N ++ G + A K +
Sbjct: 225 DPSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQAELKRKF 280
Query: 280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
Q+K LY+KN+ D EK+++ F G +T KV++ G+S + FGF+
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338
Query: 328 HYAERSSALKAVKD 341
++ A KAV +
Sbjct: 339 CFSSPEEATKAVTE 352
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 244 (91.0 bits), Expect = 8.8e-20, P = 8.8e-20
Identities = 74/252 (29%), Positives = 121/252 (48%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 155 (59.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 117 (46.2 bits), Expect = 0.00064, P = 0.00064
Identities = 44/194 (22%), Positives = 89/194 (45%)
Query: 162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K + S++ + + E N ++I N + ++ +++ G + ++++++
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDESLKELFSQFGKTL-SVKVMR 224
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
DP S+ GF FV Y + A+ + ++M N ++ G + A K +
Sbjct: 225 DPNGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQAELKRKF 280
Query: 280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
Q+K LY+KN+ D EK+++ F G +T KV++ G+S + FGF+
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338
Query: 328 HYAERSSALKAVKD 341
++ A KAV +
Sbjct: 339 CFSSPEEATKAVTE 352
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 244 (91.0 bits), Expect = 9.6e-20, P = 9.6e-20
Identities = 74/252 (29%), Positives = 121/252 (48%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGK 350
V++ EI GK
Sbjct: 248 VEEMNGKEISGK 259
Score = 155 (59.6 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 117 (46.2 bits), Expect = 0.00068, P = 0.00068
Identities = 44/194 (22%), Positives = 89/194 (45%)
Query: 162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K + S++ + + E N ++I N + ++ +++ G + ++++++
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDESLKELFSQFGKTL-SVKVMR 224
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
DP S+ GF FV Y + A+ + ++M N ++ G + A K +
Sbjct: 225 DPNGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQAELKRKF 280
Query: 280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
Q+K LY+KN+ D EK+++ F G +T KV++ G+S + FGF+
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338
Query: 328 HYAERSSALKAVKD 341
++ A KAV +
Sbjct: 339 CFSSPEEATKAVTE 352
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 244 (91.0 bits), Expect = 9.7e-20, P = 9.7e-20
Identities = 71/250 (28%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGK 350
+ EI GK
Sbjct: 250 EMNGKEITGK 259
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 33/97 (34%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKK 269
Score = 117 (46.2 bits), Expect = 0.00068, P = 0.00068
Identities = 44/194 (22%), Positives = 89/194 (45%)
Query: 162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K + S++ + + E N ++I N + ++ +++ G + ++++++
Sbjct: 167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDENLKELFSQFGKTL-SVKVMR 224
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
DP S+ GF FV Y + A+ + ++M N ++ G + A K +
Sbjct: 225 DPSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EITGKVIFVGRAQKKVERQAELKRKF 280
Query: 280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
Q+K LY+KN+ D EK+++ F G +T KV++ G+S + FGF+
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338
Query: 328 HYAERSSALKAVKD 341
++ A KAV +
Sbjct: 339 CFSSPEEATKAVTE 352
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 236 (88.1 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 77/285 (27%), Positives = 138/285 (48%)
Query: 75 TPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF 134
+PH + K + KDK + A S +++G L D +E+ L +G V
Sbjct: 38 SPH-RDCSKNSRGQTHSGKDKEMNVAAKYRMAS-LYVGDLHADVTEDLLFRKFSTVGPVL 95
Query: 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK---NRLFI 191
+R+ +D+ + S G+A+V+F A+KA+D ++ +KGK+IR S+ R I
Sbjct: 96 SIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGI 155
Query: 192 GNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
GNV KN + K + + I K + ++G++FV + N + AD + ++M
Sbjct: 156 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAA----ASQVKALYVKNIPDNTSTEKIKELFQRH 306
N L G + K+ D A AS+ +Y+KN + E++K++F ++
Sbjct: 216 -NGKL-LKGCKVFVGRF--KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY 271
Query: 307 GEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
G+ V + SGK + FGF+ + +A KAV++ +I+G+
Sbjct: 272 GKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQ 316
Score = 159 (61.0 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 34/97 (35%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 326
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 236 (88.1 bits), Expect = 6.7e-19, P = 6.7e-19
Identities = 69/251 (27%), Positives = 120/251 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G++FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E ++ELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGKS 351
+ E+ GKS
Sbjct: 250 EMNGKEMSGKS 260
Score = 162 (62.1 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 34/97 (35%), Positives = 58/97 (59%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+LR+L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVS+ E A KA++E++ KE+ GK+I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 236 (88.1 bits), Expect = 7.4e-19, P = 7.4e-19
Identities = 69/251 (27%), Positives = 120/251 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G++FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E ++ELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGKS 351
+ E+ GKS
Sbjct: 250 EMNGKEMSGKS 260
Score = 162 (62.1 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 34/97 (35%), Positives = 58/97 (59%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+LR+L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVS+ E A KA++E++ KE+ GK+I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 234 (87.4 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 81/309 (26%), Positives = 146/309 (47%)
Query: 59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDK---HAQLLALP----PNGSEVFI 111
+S K++S+ N +T ++ E+P A+ E +A +A P P + +++
Sbjct: 27 SSTKEESS--NTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYV 84
Query: 112 GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171
G L +E L +L IG V +R+ +D + S G+A+V+F + E +KA+DEL+
Sbjct: 85 GELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYT 144
Query: 172 ELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
+KG+ R S+ + ++ GNV KN K + D I K +
Sbjct: 145 LIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL 204
Query: 228 RN-RGFSFVLYYN----NACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
N +G+ FV + + NA ++ +LN G+ +S + +S + A +
Sbjct: 205 GNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHH--VSRRERQSKVE--ALKANF 260
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
+Y+KN+ + ++ +LF + GE+T + + ++ K R FGF++YA A KAV +
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 342 TEKYEIDGK 350
E GK
Sbjct: 321 LNDKEYKGK 329
Score = 153 (58.9 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 37/119 (31%), Positives = 68/119 (57%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
+++ +++ AL N + V+I L + +E++ DL G++ + L+KD ++ + +GF F
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGF 305
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWT-EDEFRKVIEDV 210
V++ + E A+KA+DEL+ KE KGK +L++G K E+E RK E +
Sbjct: 306 VNYANHECAQKAVDELNDKEYKGK-----------KLYVGRAQKKHEREEELRKRYEQM 353
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 49/183 (26%), Positives = 81/183 (44%)
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
+L ++I N+ TE EF + G + ++ L+KD QN + RGF FV Y N+
Sbjct: 255 ALKANFTNVYIKNLDTEITEQEFSDLFGQFGE-ITSLSLVKD-QN-DKPRGFGFVNYANH 311
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA--SQVKA----------LYVK 288
CA + ++ + +K G + A K + Q+K L++K
Sbjct: 312 ECAQKAVDELNDKEYK--GKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIK 369
Query: 289 NIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEI 347
N+ D E++K F G +T + + GK + FGF+ Y A KAV + + +
Sbjct: 370 NLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRML 429
Query: 348 DGK 350
GK
Sbjct: 430 AGK 432
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L + +E L+ G + ++M D E G+SKGF FV + + E A KA+
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + L GK + +L++ K
Sbjct: 422 TEMNQRMLAGKPLYVALAQRK 442
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 230 (86.0 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 69/253 (27%), Positives = 127/253 (50%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETK---NRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK+IR S+ R IGNV KN + K + + I K
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA---- 278
+ ++G++FV + N + AD + ++M N L G + K+ D A
Sbjct: 130 MSDDQGSKGYAFVHFQNQSAADRAIEEM-NGKL-LKGCKVFVGRF--KNRKDREAELRSK 185
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ + +A K
Sbjct: 186 ASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKK 245
Query: 338 AVKDTEKYEIDGK 350
AV++ +I+G+
Sbjct: 246 AVEEMNGRDINGQ 258
Score = 159 (61.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 34/97 (35%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 232 (86.7 bits), Expect = 5.5e-18, P = 5.5e-18
Identities = 65/250 (26%), Positives = 120/250 (48%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L DA+E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 174 (66.3 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 231 (86.4 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 65/250 (26%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 170 (64.9 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 231 (86.4 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 65/250 (26%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 170 (64.9 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 231 (86.4 bits), Expect = 9.7e-18, P = 9.7e-18
Identities = 64/250 (25%), Positives = 121/250 (48%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D+ + S G+A V+F+ E A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N F D + + + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEEAERAIEKM-NGMFLNDRKVFVGRFKSRRDRQAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN+ ++ E++++LF R G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVD 249
Query: 341 DTEKYEIDGK 350
+ +++GK
Sbjct: 250 EMNGKDLNGK 259
Score = 177 (67.4 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 39/97 (40%), Positives = 58/97 (59%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +D+ A+L A + V+I L +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ K+L GK I ++ K
Sbjct: 233 FGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269
Score = 103 (41.3 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 34/109 (31%), Positives = 51/109 (46%)
Query: 236 LYYNNACADYSRQKMLNANF-KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
+Y A RQ L F ++ + P I P+ D S V LYVKN+ D
Sbjct: 261 IYVGRAQKKVERQTELKHKFGQMKQDKPKIEQV-PQ---DRSVRCQGVN-LYVKNLDDGI 315
Query: 295 STEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
E++++ F G +T KV M G+S + FGF+ ++ A KAV +
Sbjct: 316 DDERLRKEFSPFGTITSAKVTMEGGRS--KGFGFVCFSSPEEATKAVTE 362
Score = 48 (22.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 176 KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFV 235
+++RC + N L++ N+ ++ RK G TI K R++GF FV
Sbjct: 297 RSVRC---QGVN-LYVKNLDDGIDDERLRKEFSPFG----TITSAKVTMEGGRSKGFGFV 348
Query: 236 LY 237
+
Sbjct: 349 CF 350
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 230 (86.0 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 68/250 (27%), Positives = 121/250 (48%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + ++ L D +G V VR+ +D + S G+ +V+F + + A +AI
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ L GK IR S + R GN+ KN E K + D I K
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKV 155
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S +++G+ FV Y N A + +K LN L+ + + D +A ++
Sbjct: 156 AVDSSGQSKGYGFVQYANEESAQKAIEK-LNGML-LNDKQVYVGPFLRRQERDSTANKTK 213
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+YVKN+ ++T+ + +K F +G++T VVM G+ + FGF+++ A +AV+
Sbjct: 214 FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVE 273
Query: 341 DTEKYEIDGK 350
++ D K
Sbjct: 274 SLNGHKFDDK 283
Score = 129 (50.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 50/184 (27%), Positives = 86/184 (46%)
Query: 183 SETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241
++TK +++ N+ ++ T+D+ + + G + + ++KD + S+ GF FV + N
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITSAVVMKDGEGKSK--GFGFVNFEN-- 264
Query: 242 CADYSRQ-KMLNANFKLDGNTPTISWADPKSTPD------------HSAAASQVKALYVK 288
D +R + LN + K D + A KS + +A Q LYVK
Sbjct: 265 ADDAARAVESLNGH-KFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVK 323
Query: 289 NIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
N+ + S EK+KE+F G VT KV+ P + K GF+ +A A +A+
Sbjct: 324 NLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEAMSQLSGKM 382
Query: 347 IDGK 350
I+ K
Sbjct: 383 IESK 386
Score = 116 (45.9 bits), Expect = 0.00085, P = 0.00085
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++ L S+E L+++ P G V ++M+D +G SKG FV+F + E A +A+
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS 376
Query: 167 ELHSKELKGKTIRCSLSETK 186
+L K ++ K + ++++ K
Sbjct: 377 QLSGKMIESKPLYVAIAQRK 396
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 229 (85.7 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 63/251 (25%), Positives = 121/251 (48%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ + E++KE+F ++G V + +GK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGKS 351
+ +++GKS
Sbjct: 250 EMNGKDMNGKS 260
Score = 153 (58.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 32/97 (32%), Positives = 58/97 (59%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D ++E L+++ G V++M D ++G+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ K++ GK++ ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
Score = 38 (18.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 260 NTPTISWADPKSTPDHSAAASQVKAL 285
NT T + P+ T +AAAS V+A+
Sbjct: 483 NTSTQTMG-PRPTTAAAAAASAVRAV 507
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 228 (85.3 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 64/250 (25%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 174 (66.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 228 (85.3 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 64/250 (25%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 174 (66.3 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 228 (85.3 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 64/250 (25%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 174 (66.3 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 228 (85.3 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 64/250 (25%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 174 (66.3 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 228 (85.3 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 64/250 (25%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 174 (66.3 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 228 (85.3 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 64/250 (25%), Positives = 119/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKELNGK 259
Score = 174 (66.3 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 177 (67.4 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 50/171 (29%), Positives = 84/171 (49%)
Query: 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK- 171
G+P D + L+D GD+ + +MKD+ +G S+GF +V+F S E AK A+ H
Sbjct: 9 GIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLG 68
Query: 172 ----ELKGKTIRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
E+K T + + + R+F+ +P + +E +FR E G + + + KD
Sbjct: 69 NRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGE-ITDLYMPKD-Y 126
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
N ++RG F+ + + AD S + ++ L G T + A PK DH
Sbjct: 127 NSKQHRGIGFITF---SSAD-SVEDLMEDTHDLGGTTVAVDRATPKED-DH 172
Score = 134 (52.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 40/159 (25%), Positives = 76/159 (47%)
Query: 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
+ +L + +P + D + + G +E ++KD ++ R+RGF +V + A A+
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGD-LEDCIVMKD-RSTGRSRGFGYVTF---ASAED 56
Query: 246 SRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
++ + +F L + A PK + A +V ++V IP + S + F+R
Sbjct: 57 AKNALKGEHF-LGNRILEVKVATPKE--EMRQPAKKVTRIFVARIPSSVSESDFRSHFER 113
Query: 306 HGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342
+GE+T + MP + K R GFI ++ S ++DT
Sbjct: 114 YGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT 152
Score = 102 (41.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +F+ +P SE D R E G++ ++ + KD S + +G F++F S + + ++
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Query: 167 ELHSKELKGKTI 178
+ H +L G T+
Sbjct: 151 DTH--DLGGTTV 160
Score = 96 (38.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
N++F+G +P+ + D+ R G ++ + KDP+ S +RGF FV + N AD
Sbjct: 240 NKIFVGRLPQEASVDDLRDYFGRFGH-IQDAYIPKDPKR-SGHRGFGFVTFAENGVAD-- 295
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
++ + ++ G I A P SA AS +
Sbjct: 296 --RVARRSHEICGQEVAIDSATPLDEAGPSAGASSM 329
Score = 94 (38.1 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDT 342
++V +P S + +++ F R G + +P P +SG R FGF+ +AE A + +
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR-- 299
Query: 343 EKYEIDGK 350
+EI G+
Sbjct: 300 RSHEICGQ 307
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 223 (83.6 bits), Expect = 5.2e-17, P = 5.2e-17
Identities = 70/257 (27%), Positives = 129/257 (50%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E+ L +G V +R+ +D S S G+ +V+F A+KA++
Sbjct: 10 ASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALE 69
Query: 167 ELHSKELKGKTIRCSLSETK---NRLFIGNV-PKNWTEDEFRKVI-EDVGP-G-VETIEL 219
++ +KGK+IR S+ + IGNV KN + K + E P G + + ++
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKV 129
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ D + ++G+ FV Y + AD + ++M N D T+ A KS D A
Sbjct: 130 MTDEEG---SKGYGFVHYQDQRAADRAIEEM-NGKLLRDS---TLFVARFKSRKDREAEL 182
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ A +Y+KN D+ E ++ +F ++G+ V + SGK + FGF+ + +
Sbjct: 183 REKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKA 242
Query: 335 ALKAVKDTEKYEIDGKS 351
A AV+D +I+G++
Sbjct: 243 AKNAVEDMNGRDINGQT 259
Score = 156 (60.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ KD+ A+L P + V+I D +E LR + G V++MKD SG+SK
Sbjct: 173 KSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKR 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF S + AK A+++++ +++ G+TI ++ K
Sbjct: 232 FGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKK 268
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 226 (84.6 bits), Expect = 8.9e-17, P = 8.9e-17
Identities = 64/250 (25%), Positives = 118/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D S S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ +R S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + +RG FV + A + Q M N D + K + A A +
Sbjct: 131 VCDENGSRGHGFVHFETQEAATRAIQTM-NGMLLNDRKVFVGHFKSRKEREAEFGARAME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ +++E+F R G+ V + +G+ + FGF+++ + A KAV
Sbjct: 190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVA 249
Query: 341 DTEKYEIDGK 350
D EI+G+
Sbjct: 250 DMNGKEINGR 259
Score = 130 (50.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+ A + V+I D + LR++ G V++M D +G SKG
Sbjct: 174 KSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ +++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVADMNGKEINGRMV 261
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 217 (81.4 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 73/283 (25%), Positives = 144/283 (50%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP + +KD+ A+ L L N LP ++++L+++ E D E+RL+
Sbjct: 392 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 436
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK--NRLFIGNVPKNWT 199
+ G+SKG A++ F+++ A+K ++E E+ G++I + K N+ F G W+
Sbjct: 437 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 495
Query: 200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
+ V+ ++ ET++ IK PQN + +++G++F+ + A + +++
Sbjct: 496 GESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 552
Query: 250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N + ++G + P+ +P+ A + K L+VK + + T+ E +KE F G
Sbjct: 553 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEETTEETLKESFD--GS 608
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
+ ++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 609 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 650
Score = 172 (65.6 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 73/314 (23%), Positives = 145/314 (46%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASV-GEDEKD----------KHAQLLALPPNGS-E 108
E+D+ E + D+D EEEE+P G+ +K+ K ++ A P S
Sbjct: 262 EEDEEEEEDEEDEDEDEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFN 321
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAID 166
+F+G L S +L+ I DVF + D G S+ F +V F S E +KA+
Sbjct: 322 LFVGNLNFSKSASELKT---GISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL- 377
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV--ETIELIKDPQ 224
EL ++ G I+ + K+ + ++ KV +D V + +E I+
Sbjct: 378 ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVE-IRLVS 436
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-TPD-----HSAA 278
+++G +++ + A A+ + ++ ++DG + ++ + K D +S
Sbjct: 437 KDGKSKGIAYIEFKTEADAEKTLEEKQGT--EIDGRSISLYYTGEKGQNQDFRGGKNSTW 494
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
+ + K L + N+ + + E ++E+F++ T + +P ++GK + + FI +A A +
Sbjct: 495 SGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKE 551
Query: 338 AVKDTEKYEIDGKS 351
A+ K EI+G++
Sbjct: 552 ALNSCNKREIEGRA 565
Score = 160 (61.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 46/170 (27%), Positives = 91/170 (53%)
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
+ L A+EE L+++ E F +++ ++ ++G+SKG+AF+ F S E AK+A++ +
Sbjct: 503 LSNLAYSATEETLQEVFEKA--TF-IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 558
Query: 171 KELKGKTIRCSL----------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
+E++G+ IR L S+ LF+ + + TE+ ++ + G ++
Sbjct: 559 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFD----GSIRARIV 614
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
D + S ++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 615 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 661
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 71/306 (23%), Positives = 124/306 (40%)
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDE----KDKHAQLLALPPNGSEVFIG 112
A AS+ ++ E D+D +EEE+ + E K K A A+P
Sbjct: 180 APASDDEEEEEDEDEDEDEDEDDEEEEDDSEEEAMETVPAKGKKAPAKAVPVKAKST-AE 238
Query: 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS---KEFAKKAIDELH 169
++ EED D + D E +++E E + KE K E+
Sbjct: 239 DEDEEEDEEDEEDEEDDDEDEDEEEDEEEEEDEEDEDEDEEEEEEEPVKEAPGKRKKEMA 298
Query: 170 SK----ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
+ E K + + + T LF+GN+ + + E + I DV + ++
Sbjct: 299 KQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSASELKTGISDVF-AKNDLAVVDVRIG 357
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
SR F +V + + D + L K+ GN I PK S + L
Sbjct: 358 VSRK--FGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKDRDARTL 408
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
KN+P + +++KE+F+ E+ ++V GKS + +I + + A K +++ +
Sbjct: 409 LAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQGT 465
Query: 346 EIDGKS 351
EIDG+S
Sbjct: 466 EIDGRS 471
Score = 122 (48.0 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ GL ++ +EE L++ + G + R++ D+E+G SKGF FV F S+E AK A + +
Sbjct: 587 LFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 643
Query: 169 HSKELKGKTIRCSLSETK 186
E+ G + ++ K
Sbjct: 644 EDGEIDGNKVTLDWAKPK 661
Score = 50 (22.7 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDK 95
KA ++ +D+ E + D++ ++E++ E+E+D+
Sbjct: 232 KAKSTAEDEDEEEDEEDEEDEEDDDEDEDEEEDEEEEEDE 271
Score = 48 (22.0 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDK 95
KA A A++ D+D EE+E+ EDE ++
Sbjct: 223 KAPAKAVPVKAKSTAEDEDEEEDEEDEEDEEDDDEDEDEE 262
Score = 46 (21.3 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSE 108
+K G + K + ++ ++DD+ EE+E+ E K A A P + E
Sbjct: 134 AKNGKNAKKEDSD-EEDEDDSEEDEEDEEEDEDDFEPAVVKGAAAAAAPASDDE 186
Score = 39 (18.8 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
+KA + +AE ++D E+EE E+E ++ +
Sbjct: 226 AKAVPVKAKSTAEDEDEEEDEEDEEDEEDDDEDEDEEEDEEEEE 269
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 226 (84.6 bits), Expect = 9.0e-17, P = 9.0e-17
Identities = 62/250 (24%), Positives = 120/250 (48%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ EK+KE+F ++G + + SGK + FGF+ + A +AV
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKEMNGK 259
Score = 157 (60.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/97 (32%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A++ A + V+I +D +E L+++ G +R+M D +SG+SKG
Sbjct: 174 KSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A++A+DE++ KE+ GK + ++ K
Sbjct: 233 FGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKK 269
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 220 (82.5 bits), Expect = 9.8e-17, P = 9.8e-17
Identities = 64/254 (25%), Positives = 121/254 (47%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P S +++G L D +E L + P G + +R+ +D + S +A+V+F+ + A+
Sbjct: 9 PTAS-LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+D ++ +KGK +R S+ L +GN+ KN + K + D I
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS--A 277
+ + ++G+ FV + + A+ + +KM N L+G + + + A
Sbjct: 128 CNVVCDENGSKGYGFVHFETHEAAERAIKKM-NGML-LNGRKVFVGQFKSRKEREAELGA 185
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
A + +Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A
Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 337 KAVKDTEKYEIDGK 350
KAV + E++GK
Sbjct: 246 KAVDEMNGKELNGK 259
Score = 172 (65.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 39/97 (40%), Positives = 56/97 (57%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 206 (77.6 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 61/245 (24%), Positives = 116/245 (47%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P S +++G L D +E L + P G + +R+ +D + S +A+V+F+ + A+
Sbjct: 9 PTAS-LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+D ++ +KGK +R S+ L +GN+ KN + K + D I
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS--A 277
+ + ++G+ FV + + A+ + +KM N L+G + + + A
Sbjct: 128 CNVVCDENGSKGYGFVHFETHEAAERAIKKM-NGML-LNGRKVFVGQFKSRKEREAELGA 185
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
A + +Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A
Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 337 KAVKD 341
KAV +
Sbjct: 246 KAVDE 250
Score = 152 (58.6 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKE 172
F FVSF E A+KA+DE++ KE
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKE 255
Score = 110 (43.8 bits), Expect = 0.00086, P = 0.00086
Identities = 34/163 (20%), Positives = 76/163 (46%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++G++ + TE + GP + +I + +D S + +++V + + A+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLIT-SGSSNYAYVNFQHTKDAEHALD 70
Query: 249 KMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
M NF + G I W S D S S V ++VKN+ + + + + + G
Sbjct: 71 TM---NFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
+ + ++G + +GF+H+ +A +A+K ++G+
Sbjct: 124 NILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 224 (83.9 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 60/250 (24%), Positives = 121/250 (48%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ +K+K++F ++G + + ++GK R FGF+ + A +AV
Sbjct: 190 FTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVD 249
Query: 341 DTEKYEIDGK 350
+ E++GK
Sbjct: 250 EMNGKEMNGK 259
Score = 164 (62.8 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 33/97 (34%), Positives = 58/97 (59%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D ++ L+D+ G+ +R+M D E+G+S+G
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A++A+DE++ KE+ GK I ++ K
Sbjct: 233 FGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKK 269
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 212 (79.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 73/282 (25%), Positives = 139/282 (49%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP G D K A L N L + +E++L+++ E D E+RL+
Sbjct: 237 EKPK---GRDSKKVRAARTLLAKN--------LSFNITEDELKEVFE---DAVEIRLVS- 281
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN--WT 199
+ G SKG A++ F+S+ A+K ++E E+ G+++ + K + KN W+
Sbjct: 282 -QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ-ERTGKNSTWS 339
Query: 200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNP-SRNRGFSFVLYYNNACADYSRQK 249
+ V+ ++ ET++ IK PQNP +++G++F+ + A + +++
Sbjct: 340 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEF---ASFEDAKEA 396
Query: 250 MLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N +++G T + P+ +P+ A + K L+VK + ++T+ E +KE F+ G
Sbjct: 397 LNSCNKMEIEGRTIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFE--GS 452
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDG 349
V ++ ++G + FGF+ + A A + E EIDG
Sbjct: 453 VRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEIDG 494
Score = 207 (77.9 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 86/320 (26%), Positives = 150/320 (46%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN-----GSE------V 109
E+D+ E +DD EEEE A+ G+ +K+ Q A GSE +
Sbjct: 110 EEDEDEEDEDEEDDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNL 169
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMK--DKESGESKGFAFVSFRSKEFAKKAIDE 167
FIG L K +E L I D+F + D +G ++ F +V F S E +KA+ E
Sbjct: 170 FIGNLNKSVAE-----LKVAISDLFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKAL-E 223
Query: 168 LHSKELKGKTIRCSLSETKNR----------LFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
L ++ G I+ L + K R L N+ N TEDE ++V ED VE I
Sbjct: 224 LTGLKVFGNEIK--LEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA---VE-I 277
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-----T 272
L+ R++G +++ + + A A+ + ++ A ++DG + ++ + K T
Sbjct: 278 RLVSQD---GRSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEKGQRQERT 332
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+S + + K L + N+ + + E ++E+F++ T + +P GK + + FI +A
Sbjct: 333 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFAS 389
Query: 332 RSSALKAVKDTEKYEIDGKS 351
A +A+ K EI+G++
Sbjct: 390 FEDAKEALNSCNKMEIEGRT 409
Score = 164 (62.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQLLALPPNGSEVFIGGLPKD 117
SE D AE N + ++ GE +++ + + + L
Sbjct: 296 SEAD--AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYS 353
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
A+EE L+++ E F +++ ++ G+SKG+AF+ F S E AK+A++ + E++G+T
Sbjct: 354 ATEETLQEVFEKA--TF-IKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRT 409
Query: 178 IRCSL----------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
IR L S+ LF+ + ++ TE+ ++ E G ++ D + S
Sbjct: 410 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS 465
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 466 -SKGFGFVDFNSEEDAKTAKEAMEDG--EIDGNKVTLDWAKPK 505
Score = 132 (51.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ GL +D +EE L++ E G V R++ D+E+G SKGF FV F S+E AK A + +
Sbjct: 431 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAM 487
Query: 169 HSKELKGKTIRCSLSETKNR 188
E+ G + ++ K +
Sbjct: 488 EDGEIDGNKVTLDWAKPKGK 507
Score = 50 (22.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 58 GASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALP 103
G + + +R++D+ E+EE EDE+++ + A P
Sbjct: 92 GKKNGKNAKKEDRDEDEDEEDEDEEDEDEEDDEDEEEEEEPVKAAP 137
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 224 (83.9 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 69/254 (27%), Positives = 118/254 (46%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ ++
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFI---GNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+DEL+ +KGK R S+ L GNV KN K + D I
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 220 IKDPQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ ++G+ FV +Y A A + K +N N + S D +
Sbjct: 159 CKVAQDEFGVSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 214
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI E+ ++LF++ GE+T + GK R FGF++++
Sbjct: 215 FEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHE 274
Query: 334 SALKAVKDTEKYEI 347
SA AV++ E+
Sbjct: 275 SAQAAVEEMNDKEV 288
Score = 144 (55.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 33/118 (27%), Positives = 64/118 (54%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + + +E+ R L E G++ L +D E G+S+GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWT-EDEFRKVIE 208
FV+F + E A+ A++E++ KE++ + +L++G K E+E RK E
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYE 313
Score = 78 (32.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 28/95 (29%), Positives = 44/95 (46%)
Query: 256 KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315
K+ +T + A P+S SA KA + P + EK KE ++ E P
Sbjct: 356 KVMRDTAPVETATPESETKESANKENEKAAEGEKEP--AAEEKEKEE-KKEAEQKPEKKP 412
Query: 316 PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
GKS + FGF+ ++ A KAV + + ++GK
Sbjct: 413 LGKS--KGFGFVCFSSPDEASKAVTEMNQRMVNGK 445
Score = 40 (19.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 286 YVKNIPDNTSTEKIKELFQ 304
Y+KN D + EK KE Q
Sbjct: 705 YMKNKSDEPAAEKPKEAAQ 723
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 223 (83.6 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 64/251 (25%), Positives = 117/251 (46%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KE F ++G V + GK R FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGKS 351
D +++GK+
Sbjct: 250 DMNGKDLNGKA 260
Score = 145 (56.1 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++ G V++M D + G+S+G
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+D+++ K+L GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 217 (81.4 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 73/283 (25%), Positives = 144/283 (50%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP + +KD+ A+ L L N LP ++++L+++ E D E+RL+
Sbjct: 33 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 77
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK--NRLFIGNVPKNWT 199
+ G+SKG A++ F+++ A+K ++E E+ G++I + K N+ F G W+
Sbjct: 78 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 136
Query: 200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
+ V+ ++ ET++ IK PQN + +++G++F+ + A + +++
Sbjct: 137 GESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 193
Query: 250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N + ++G + P+ +P+ A + K L+VK + + T+ E +KE F G
Sbjct: 194 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEETTEETLKESFD--GS 249
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
+ ++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 250 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 291
Score = 160 (61.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 46/170 (27%), Positives = 91/170 (53%)
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
+ L A+EE L+++ E F +++ ++ ++G+SKG+AF+ F S E AK+A++ +
Sbjct: 144 LSNLAYSATEETLQEVFEKA--TF-IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 199
Query: 171 KELKGKTIRCSL----------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
+E++G+ IR L S+ LF+ + + TE+ ++ + G ++
Sbjct: 200 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFD----GSIRARIV 255
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
D + S ++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 256 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 302
Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 54/218 (24%), Positives = 108/218 (49%)
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNR--------LFIGNVPKNWTED 201
F +V F S E +KA+ EL ++ G I+ + K+ L N+P T+D
Sbjct: 3 FGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 61
Query: 202 EFRKVIEDVGPGVETIELI-KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260
E ++V ED VE I L+ KD +++G +++ + A A+ + ++ ++DG
Sbjct: 62 ELKEVFEDA---VE-IRLVSKD----GKSKGIAYIEFKTEADAEKTLEEKQGT--EIDGR 111
Query: 261 TPTISWADPKS-TPD-----HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314
+ ++ + K D +S + + K L + N+ + + E ++E+F++ T + +
Sbjct: 112 SISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKV 168
Query: 315 PPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
P ++GK + + FI +A A +A+ K EI+G++
Sbjct: 169 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 206
Score = 122 (48.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ GL ++ +EE L++ + G + R++ D+E+G SKGF FV F S+E AK A + +
Sbjct: 228 LFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 284
Query: 169 HSKELKGKTIRCSLSETK 186
E+ G + ++ K
Sbjct: 285 EDGEIDGNKVTLDWAKPK 302
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 221 (82.9 bits), Expect = 5.0e-16, P = 5.0e-16
Identities = 63/250 (25%), Positives = 117/250 (46%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RG+ FV + A+ + Q M N D + + ++ A +
Sbjct: 131 VCDEYGSRGYGFVHFETQEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ +++KE+F G V + SG+ R FGF++Y A KAV
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 341 DTEKYEIDGK 350
+ E++G+
Sbjct: 250 EMNGKEVNGR 259
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ V+I +D ++ L+++ G+ V++M D SG S+GF FV++ + E A+KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVT 249
Query: 167 ELHSKELKGKTI 178
E++ KE+ G+ +
Sbjct: 250 EMNGKEVNGRMV 261
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 219 (82.2 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 65/219 (29%), Positives = 110/219 (50%)
Query: 65 SAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSE--VFIGGLPKDASEED 122
+AE N + + E + T S + + +A+ + P N + +FIGGL + +++
Sbjct: 120 NAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETS-PFNREDGKMFIGGLNWETTDDS 178
Query: 123 LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTI-- 178
LRD E G+V + +M+D +G S+GF F++F++ K ++E+ SKE L GK I
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP----KCVNEVMSKEHHLDGKIIDP 234
Query: 179 -RCSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFS 233
R E + + +F+G VP + TE+EFR G ++ T+ + KD P RGF
Sbjct: 235 KRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRP---RGFG 291
Query: 234 FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
FV Y N + + + M + G + A PK++
Sbjct: 292 FVTYENESAVEAT---MSQPYITIHGKPVEVKRATPKAS 327
Score = 140 (54.3 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 45/167 (26%), Positives = 76/167 (45%)
Query: 188 RLFIGNVPKNW--TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
++FIG + NW T+D R E G ++ +++D R+RGF F+ + N C +
Sbjct: 164 KMFIGGL--NWETTDDSLRDYFEQFGEVLDCT-VMRD-STTGRSRGFGFLTFKNPKCVN- 218
Query: 246 SRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
++++ LDG DPK K ++V +P + + E+ + F +
Sbjct: 219 ---EVMSKEHHLDGKI-----IDPKRAIPREEQEKTAK-MFVGGVPGDCTEEEFRNFFNQ 269
Query: 306 HGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGK 350
G V + K +G+ R FGF+ Y E SA++A I GK
Sbjct: 270 FGRVLDATLMMDKDTGRPRGFGFVTY-ENESAVEATMSQPYITIHGK 315
Score = 42 (19.8 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 60 SEKDQSAEANRNDDDTPHVEEEEKPTAS 87
S++ SAEA N +D + ++ P S
Sbjct: 77 SDQQYSAEAEANQEDDLNETSQQAPDPS 104
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 220 (82.5 bits), Expect = 6.8e-16, P = 6.8e-16
Identities = 64/254 (25%), Positives = 121/254 (47%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P S +++G L D +E L + P G + +R+ +D + S +A+V+F+ + A+
Sbjct: 9 PTAS-LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+D ++ +KGK +R S+ L +GN+ KN + K + D I
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS--A 277
+ + ++G+ FV + + A+ + +KM N L+G + + + A
Sbjct: 128 CNVVCDENGSKGYGFVHFETHEAAERAIKKM-NGML-LNGRKVFVGQFKSRKEREAELGA 185
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
A + +Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A
Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 337 KAVKDTEKYEIDGK 350
KAV + E++GK
Sbjct: 246 KAVDEMNGKELNGK 259
Score = 172 (65.6 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 39/97 (40%), Positives = 56/97 (57%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 219 (82.2 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 69/258 (26%), Positives = 128/258 (49%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P S +++G L + SE+ L ++ +G V +R+ +D + S +A+V++ + A++
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETI-- 217
A+D L++ ++GK R S+ L +GNV KN + K + D I
Sbjct: 67 ALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILS 126
Query: 218 -ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
+++ D N S+ GF FV Y AD + K+ N ++G + P +
Sbjct: 127 CKVVTDDGNSSK--GFGFVHYETQESADKAIAKV-NG-MMINGQKVFVG---PFKSSKER 179
Query: 277 AAASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERS 333
++VK ++ KN+ ++ +++KEL Q++GE+T + +M K + FGF ++ E +
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANF-ESA 238
Query: 334 SALKAVKDTEKYEI-DGK 350
A K V + E +I GK
Sbjct: 239 EAAKNVVENENGKIFHGK 256
Score = 194 (73.4 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 64/252 (25%), Positives = 117/252 (46%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D + SKGF FV + ++E A KAI ++
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKV 158
Query: 169 HSKELKGKTI----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+ + G+ + R +E K +F N+ ++ D+ +++++ G + I
Sbjct: 159 NGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGE-ITNI 217
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP---- 273
++ D + S+ GF F N A+ ++ + N N K+ P + K
Sbjct: 218 TIMADDKGKSK--GFGFA---NFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272
Query: 274 -DHSAAAS-QVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSG-KRDFGFIHY 329
H+ Q LY+KNI D+ +K++E+F + G +T +VM K+ + FGF+ Y
Sbjct: 273 LKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 330 AERSSALKAVKD 341
A +AV +
Sbjct: 333 TAPDEATRAVTE 344
Score = 124 (48.7 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VF L +D + L++L + G++ + +M D + G+SKGF F +F S E AK ++
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVE 246
Query: 167 ELHSKELKGKTIRCSLSETK 186
+ K GK I ++ K
Sbjct: 247 NENGKIFHGKPIYAGRAQKK 266
>UNIPROTKB|D6REZ6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 HOGENOM:HOG000112240 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965724
ProteinModelPortal:D6REZ6 SMR:D6REZ6 Ensembl:ENST00000513473
ArrayExpress:D6REZ6 Bgee:D6REZ6 Uniprot:D6REZ6
Length = 193
Score = 199 (75.1 bits), Expect = 8.7e-16, P = 8.7e-16
Identities = 43/113 (38%), Positives = 70/113 (61%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGV 178
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 219 (82.2 bits), Expect = 9.6e-16, P = 9.6e-16
Identities = 61/250 (24%), Positives = 117/250 (46%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN E K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RG+ FV + A+ + Q M N D + + ++ A +
Sbjct: 131 VCDEHGSRGYGFVHFETQEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ ++++E+F G V + +G+ R FGF++Y A KAV
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 341 DTEKYEIDGK 350
+ E++G+
Sbjct: 250 EMNGKEVNGR 259
Score = 128 (50.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 24/72 (33%), Positives = 46/72 (63%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ V+I +D ++ LR++ G+ V++M D ++G S+GF FV++ + E A+KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 167 ELHSKELKGKTI 178
E++ KE+ G+ I
Sbjct: 250 EMNGKEVNGRMI 261
Score = 89 (36.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYVKN+ D +++++ F +G +T VM G K FGF+ ++ A KAV +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTE 352
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 211 (79.3 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 62/224 (27%), Positives = 109/224 (48%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVE---EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIG 112
+ A ++ +A +D P + E E+ AS GE++ A + + G ++F+G
Sbjct: 10 ETNAENGHEACDAEAAEDKAPAGQNGAEGEQINASKGEEDAGCVADISSPLTEGVKMFVG 69
Query: 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172
GL D S++DL+D G+V + + D +G S+GF F+ F+ E K ++ +
Sbjct: 70 GLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEHR- 128
Query: 173 LKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
L G+ I + +++ K+ ++F+G + ED+ R+ E G +E IEL DP+
Sbjct: 129 LDGRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDQIREYFETFGE-IEAIELPMDPKTNK 187
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANF-KLDGNTPTISWADPK 270
R RGF F+ + +K+L F + G+ I A PK
Sbjct: 188 R-RGFVFITFKEEDPV----KKILEKKFHNVSGSKCEIKIAQPK 226
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 38/165 (23%), Positives = 76/165 (46%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
++F+G + + ++ + + G V + DP N R+RGF F+L+ + D
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGE-VSDCTIKMDP-NTGRSRGFGFILFKDAESVD--- 119
Query: 248 QKML-NANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
K+L + +LDG DPK + +K ++V + ++I+E F+
Sbjct: 120 -KVLEHKEHRLDGRL-----IDPKKAM--AMKKDPIKKIFVGGLNPEAGEDQIREYFETF 171
Query: 307 GEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
GE+ + +P P + +R F FI + E +K + + + + + G
Sbjct: 172 GEIEAIELPMDPKTNKRRGFVFITFKEEDP-VKKILEKKFHNVSG 215
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 213 (80.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 75/283 (26%), Positives = 141/283 (49%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP G D K A L N L + +E++L+++ E D E+RL+
Sbjct: 383 EKPK---GRDSKKVRAARTLLAKN--------LSFNITEDELKEVFE---DAVEIRLVS- 427
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN--WT 199
+ G SKG A++ F+S+ A+K ++E E+ G+++ + K + KN W+
Sbjct: 428 -QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ-ERTGKNSTWS 485
Query: 200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNP-SRNRGFSFVLYYNNACADYSRQK 249
+ V+ ++ ET++ IK PQNP +++G++F+ + A + +++
Sbjct: 486 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEF---ASFEDAKEA 542
Query: 250 MLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N +++G T + P+ +P+ A + K L+VK + ++T+ E +KE F+ G
Sbjct: 543 LNSCNKMEIEGRTIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFE--GS 598
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
V ++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 599 VRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 640
Score = 175 (66.7 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 73/314 (23%), Positives = 146/314 (46%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN-----GSE------V 109
E+D+ E +D+D EEEE A+ G+ +K+ Q A GSE +
Sbjct: 254 EEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNL 313
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMK--DKESGESKGFAFVSFRSKEFAKKAIDE 167
FIG L + S +L+ I ++F + D +G ++ F +V F S E +KA+ E
Sbjct: 314 FIGNLNPNKSVAELK---VAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKAL-E 369
Query: 168 LHSKELKGKTIRCSLSETKN----RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
L ++ G I+ + ++ R + KN + + +++V I L+
Sbjct: 370 LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQD 429
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-----TPDHSAA 278
R++G +++ + + A A+ + ++ A ++DG + ++ + K T +S
Sbjct: 430 ---GRSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEKGQRQERTGKNSTW 484
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
+ + K L + N+ + + E ++E+F++ T + +P GK + + FI +A A +
Sbjct: 485 SGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKE 541
Query: 338 AVKDTEKYEIDGKS 351
A+ K EI+G++
Sbjct: 542 ALNSCNKMEIEGRT 555
Score = 164 (62.8 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQLLALPPNGSEVFIGGLPKD 117
SE D AE N + ++ GE +++ + + + L
Sbjct: 442 SEAD--AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYS 499
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
A+EE L+++ E F +++ ++ G+SKG+AF+ F S E AK+A++ + E++G+T
Sbjct: 500 ATEETLQEVFEKA--TF-IKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRT 555
Query: 178 IRCSL----------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
IR L S+ LF+ + ++ TE+ ++ E G ++ D + S
Sbjct: 556 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS 611
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 612 -SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 651
Score = 148 (57.2 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 76/299 (25%), Positives = 125/299 (41%)
Query: 57 AGASE-KDQSAEANRNDDDTPHVEEEEKPTAS-VGE--DEKDKHAQLLALPPNGSEVFIG 112
A ASE +D+ + + +DDD EEEE + V E K K +P V
Sbjct: 184 APASEDEDEEDDDDEDDDDDDEEEEEEDDSEEEVMEITPAKGKKTPAKVVPVKAKSVAEE 243
Query: 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172
+ E++ D E + E +D+E E A R KE K+ + E
Sbjct: 244 EEDDEDDEDEEEDEDEEDEEDDED---EDEEEEEEPVKAAPGKRKKEMTKQK----EAPE 296
Query: 173 LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 232
K + I S T LFIGN+ N + E + I ++ +L NR F
Sbjct: 297 AKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISEL---FAKNDLAAVDVRTGTNRKF 353
Query: 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPD 292
+V + + D + L K+ GN I PK A+ + L KN+
Sbjct: 354 GYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGRDSKKVRAA--RTLLAKNLSF 406
Query: 293 NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
N + +++KE+F+ E+ ++V G+S + +I + + A K +++ + EIDG+S
Sbjct: 407 NITEDELKEVFEDAVEI-RLVSQDGRS--KGIAYIEFKSEADAEKNLEEKQGAEIDGRS 462
Score = 45 (20.9 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 56 KAGASEKDQSAEANRN---DDDTPHVEEEEKPTASVGEDEKDK 95
K GA + A+ +N +D +EE++ + EDE+D+
Sbjct: 124 KKGAVTPAKGAKNGKNAKKEDSDEDEDEEDEDDSDEDEDEEDE 166
Score = 39 (18.8 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 54 HSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVG 89
++K S++D+ E + D+ E+E +P G
Sbjct: 139 NAKKEDSDEDEDEEDEDDSDEDEDEEDEFEPPVVKG 174
Score = 38 (18.4 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEE 82
+K G + K + ++ + +++D +E+E
Sbjct: 134 AKNGKNAKKEDSDEDEDEEDEDDSDEDE 161
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 213 (80.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 75/283 (26%), Positives = 141/283 (49%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP G D K A L N L + +E++L+++ E D E+RL+
Sbjct: 384 EKPK---GRDSKKVRAARTLLAKN--------LSFNITEDELKEVFE---DAVEIRLVS- 428
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN--WT 199
+ G SKG A++ F+S+ A+K ++E E+ G+++ + K + KN W+
Sbjct: 429 -QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ-ERTGKNSTWS 486
Query: 200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNP-SRNRGFSFVLYYNNACADYSRQK 249
+ V+ ++ ET++ IK PQNP +++G++F+ + A + +++
Sbjct: 487 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEF---ASFEDAKEA 543
Query: 250 MLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N +++G T + P+ +P+ A + K L+VK + ++T+ E +KE F+ G
Sbjct: 544 LNSCNKMEIEGRTIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFE--GS 599
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
V ++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 600 VRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 641
Score = 175 (66.7 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 73/314 (23%), Positives = 146/314 (46%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN-----GSE------V 109
E+D+ E +D+D EEEE A+ G+ +K+ Q A GSE +
Sbjct: 255 EEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNL 314
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMK--DKESGESKGFAFVSFRSKEFAKKAIDE 167
FIG L + S +L+ I ++F + D +G ++ F +V F S E +KA+ E
Sbjct: 315 FIGNLNPNKSVAELK---VAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKAL-E 370
Query: 168 LHSKELKGKTIRCSLSETKN----RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
L ++ G I+ + ++ R + KN + + +++V I L+
Sbjct: 371 LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQD 430
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-----TPDHSAA 278
R++G +++ + + A A+ + ++ A ++DG + ++ + K T +S
Sbjct: 431 ---GRSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEKGQRQERTGKNSTW 485
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
+ + K L + N+ + + E ++E+F++ T + +P GK + + FI +A A +
Sbjct: 486 SGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKE 542
Query: 338 AVKDTEKYEIDGKS 351
A+ K EI+G++
Sbjct: 543 ALNSCNKMEIEGRT 556
Score = 164 (62.8 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQLLALPPNGSEVFIGGLPKD 117
SE D AE N + ++ GE +++ + + + L
Sbjct: 443 SEAD--AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYS 500
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
A+EE L+++ E F +++ ++ G+SKG+AF+ F S E AK+A++ + E++G+T
Sbjct: 501 ATEETLQEVFEKA--TF-IKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRT 556
Query: 178 IRCSL----------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
IR L S+ LF+ + ++ TE+ ++ E G ++ D + S
Sbjct: 557 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS 612
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 613 -SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 652
Score = 147 (56.8 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 74/301 (24%), Positives = 126/301 (41%)
Query: 57 AGASE-KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLP 115
A ASE +D+ + + DDD EEEE ED+ ++ + P G + +P
Sbjct: 184 APASEDEDEEDDDDEEDDDDDDEEEEE-------EDDSEEEVMEIT-PAKGKKTPAKVVP 235
Query: 116 KDAS-----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
A EED D + D E D++ E + V + K+ + +
Sbjct: 236 VKAKSVAEEEEDDEDDEDEEEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEA 295
Query: 171 KELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
E K + I S T LFIGN+ N + E + I ++ +L NR
Sbjct: 296 PEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISEL---FAKNDLAAVDVRTGTNR 352
Query: 231 GFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F +V + + D + L K+ GN I PK A+ + L KN+
Sbjct: 353 KFGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGRDSKKVRAA--RTLLAKNL 405
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
N + +++KE+F+ E+ ++V G+S + +I + + A K +++ + EIDG+
Sbjct: 406 SFNITEDELKEVFEDAVEI-RLVSQDGRS--KGIAYIEFKSEADAEKNLEEKQGAEIDGR 462
Query: 351 S 351
S
Sbjct: 463 S 463
Score = 45 (20.9 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 56 KAGASEKDQSAEANRN---DDDTPHVEEEEKPTASVGEDEKDK 95
K GA + A+ +N +D +EE++ + EDE+D+
Sbjct: 124 KKGAVTPAKGAKNGKNAKKEDSDEDEDEEDEDDSDEDEDEEDE 166
Score = 39 (18.8 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 54 HSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVG 89
++K S++D+ E + D+ E+E +P G
Sbjct: 139 NAKKEDSDEDEDEEDEDDSDEDEDEEDEFEPPVVKG 174
Score = 38 (18.4 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEE 82
+K G + K + ++ + +++D +E+E
Sbjct: 134 AKNGKNAKKEDSDEDEDEEDEDDSDEDE 161
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 210 (79.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 72/283 (25%), Positives = 143/283 (50%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP + +KD+ A+ L L N LP ++++L+++ E D E+RL+
Sbjct: 384 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 428
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRL--FIGNVPKNWT 199
+ G+SKG A++ F+++ A+K +E E+ G++I + K + + G W+
Sbjct: 429 -KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWS 487
Query: 200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
+ V+ ++ ET++ IK PQN + +++G++F+ + A + +++
Sbjct: 488 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 544
Query: 250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N + ++G + P+ +P+ A + K L+VK + ++T+ E +KE F G
Sbjct: 545 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFD--GS 600
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
V ++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 601 VRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 642
Score = 185 (70.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 77/320 (24%), Positives = 152/320 (47%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD----------KHAQLLALPPNGS-EV 109
E+D+ + ++++ EEEE + G+ +K+ K ++ A P S +
Sbjct: 255 EEDEDDDEEEDEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNL 314
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
F+G L S +L+ I D+F + D G S+ F +V F S E +KA+ E
Sbjct: 315 FVGNLNFSKSAPELKT---GISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL-E 370
Query: 168 LHSKELKGKTIRCSLSETKNR--------LFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
L ++ G I+ + K+ L N+P T+DE ++V ED VE I L
Sbjct: 371 LTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VE-IRL 426
Query: 220 I-KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-TPDH-- 275
+ KD +++G +++ + A A+ + ++ ++DG + ++ + K + D+
Sbjct: 427 VSKD----GKSKGIAYIEFKTEADAEKTFEEKQGT--EIDGRSISLYYTGEKGQSQDYRG 480
Query: 276 ---SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
S + + K L + N+ + + E ++E+F++ T + +P ++GK + + FI +A
Sbjct: 481 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFAS 537
Query: 332 RSSALKAVKDTEKYEIDGKS 351
A +A+ K EI+G++
Sbjct: 538 FEDAKEALNSCNKREIEGRA 557
Score = 163 (62.4 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 45/166 (27%), Positives = 89/166 (53%)
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
+ L A+EE L+++ E F +++ ++ ++G+SKG+AF+ F S E AK+A++ +
Sbjct: 495 LSNLSYSATEETLQEVFEKA--TF-IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 550
Query: 171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+E++G+ IR L + + P K +ED + +++ G ++ D +
Sbjct: 551 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRE 610
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
S ++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 611 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 653
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 71/302 (23%), Positives = 128/302 (42%)
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDE----KDKHAQLLALPPNGSEVFIG 112
A AS++++ E + ++DD E+E++ + E K K A + A+P
Sbjct: 179 APASDEEEDDEEDDDEDDDEEDEDEDEDDSEEEAMETTPAKGKKAPVKAVPVKAKSTAED 238
Query: 113 GLPK--DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV-SFRSKEFAKKAIDELH 169
+ D EED + E D E +++E E + R KE AK+
Sbjct: 239 EDEEEDDEDEEDDDEEEEDEDDDEEEDEEEEEEEEEEEPVKEAPGKRKKEMAKQKA---- 294
Query: 170 SKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRN 229
+ E K + + + T LF+GN+ + + E + I D+ + ++ SR
Sbjct: 295 APEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLF-AKNDLAVVDVRIGVSRK 353
Query: 230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKN 289
F +V + + D + L K+ GN I PK S + L KN
Sbjct: 354 --FGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKDRDARTLLAKN 404
Query: 290 IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
+P + +++KE+F+ E+ ++V GKS + +I + + A K ++ + EIDG
Sbjct: 405 LPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDG 461
Query: 350 KS 351
+S
Sbjct: 462 RS 463
Score = 127 (49.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ GL +D +EE L++ + G V R++ D+E+G SKGF FV F S+E AK A + +
Sbjct: 579 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 635
Query: 169 HSKELKGKTIRCSLSETK 186
E+ G + ++ K
Sbjct: 636 EDGEIDGNKVTLDWAKPK 653
Score = 49 (22.3 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
KA ++ +D+ E + D++ EEEE EDE+++ +
Sbjct: 231 KAKSTAEDEDEEEDDEDEEDDD-EEEEDEDDDEEEDEEEEEEE 272
Score = 43 (20.2 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
KA A++ D+D +E+E+ EDE D
Sbjct: 222 KAPVKAVPVKAKSTAEDEDEEEDDEDEEDDDEEEEDEDD 260
Score = 43 (20.2 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALP 103
S A ++++ E +DD+ E++++ E+E+++ + P
Sbjct: 234 STAEDEDEEEDDEDEEDDDEEEEDEDDDEEEDEEEEEEEEEEEPVKEAP 282
Score = 38 (18.4 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
+KAG ++ D A P EE+ + EDE D
Sbjct: 5 AKAGKNQSDPKKMA-----PPPKEVEEDSEDEEMSEDEDD 39
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 218 (81.8 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 62/250 (24%), Positives = 117/250 (46%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L D +E L + P G + +R+ +D + S +A+++F+ A++A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN E K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RG+ FV + + A+ + Q M N D + + ++ A +
Sbjct: 131 VCDEHGSRGYGFVHFETHEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ ++++E+F G V + SG+ R FGF++Y A KAV
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 341 DTEKYEIDGK 350
+ E++G+
Sbjct: 250 EMNGKEVNGR 259
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ V+I +D ++ LR++ G+ V++M D +SG S+GF FV++ + E A+KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 167 ELHSKELKGKTI 178
E++ KE+ G+ I
Sbjct: 250 EMNGKEVNGRMI 261
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 211 (79.3 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 63/250 (25%), Positives = 117/250 (46%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RGF FV + + A + M N D + + + A A +
Sbjct: 131 ACDEHGSRGFGFVHFETHEAAQQAINTM-NGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
+YVKN+P + + +++LF + G++ V + SG R FGF+++ + A KAV
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 341 DTEKYEIDGK 350
E+ G+
Sbjct: 250 HMNGKEVSGR 259
Score = 140 (54.3 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 28/89 (31%), Positives = 52/89 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 59 (25.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT 310
LYVKN+ D+ +K+++ F +G +T
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVIT 321
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 209 (78.6 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 64/251 (25%), Positives = 131/251 (52%)
Query: 114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173
LP ++++L+++ E D E+RL+ + G+SKG A++ F+++ A+K +E E+
Sbjct: 401 LPYKVTQDELKEVFE---DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 455
Query: 174 KGKTIRCSLSETK--NRLFIGNVPKNWTEDEFRKVIEDVGPGV--ETIE-------LIKD 222
G++I + K N+ + G W+ + V+ ++ ET++ IK
Sbjct: 456 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 515
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDHSAAAS 280
PQN + +++G++F+ + A + +++ + + N + ++G + P+ +P+ A +
Sbjct: 516 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN--ARSQ 570
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
K L+VK + ++T+ E +KE F G V ++ ++G + FGF+ + A KA
Sbjct: 571 PSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAA 627
Query: 340 KDT-EKYEIDG 349
K+ E EIDG
Sbjct: 628 KEAMEDGEIDG 638
Score = 185 (70.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 79/322 (24%), Positives = 148/322 (45%)
Query: 61 EKDQSAEANRNDD-DTPHVEEEEKPTASVGEDEKDKHAQLLALPP------NGSE----- 108
+ D+ E +DD D EEEE+P K + A+ A P G+E
Sbjct: 249 DDDEDDEDEDDDDEDEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAF 308
Query: 109 -VFIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAI 165
+F+G L + S +L+ I DVF + D G ++ F +V F S E +KA+
Sbjct: 309 NLFVGNLNFNKSAPELKT---GISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKAL 365
Query: 166 DELHSKELKGKTIRCSLSETKNR--------LFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
EL ++ G I+ + K+ L N+P T+DE ++V ED I
Sbjct: 366 -ELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAE----I 420
Query: 218 ELI-KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-TPDH 275
L+ KD +++G +++ + A A+ + ++ ++DG + ++ + K D+
Sbjct: 421 RLVSKD----GKSKGIAYIEFKTEADAEKTFEEKQGT--EIDGRSISLYYTGEKGQNQDY 474
Query: 276 -----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHY 329
S + + K L + N+ + + E ++E+F++ T + +P ++GK + + FI +
Sbjct: 475 RGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEF 531
Query: 330 AERSSALKAVKDTEKYEIDGKS 351
A A +A+ K EI+G++
Sbjct: 532 ASFEDAKEALNSCNKREIEGRA 553
Score = 163 (62.4 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 45/166 (27%), Positives = 89/166 (53%)
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
+ L A+EE L+++ E F +++ ++ ++G+SKG+AF+ F S E AK+A++ +
Sbjct: 491 LSNLSYSATEETLQEVFEKA--TF-IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 546
Query: 171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+E++G+ IR L + + P K +ED + +++ G ++ D +
Sbjct: 547 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRE 606
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
S ++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 607 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 649
Score = 136 (52.9 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 69/296 (23%), Positives = 120/296 (40%)
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
A E D+ E + ++DD ++ E+ + K A+++ +
Sbjct: 183 ASEDEDDEDDEDDEDEDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEED 242
Query: 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK-KAIDELHSKELKG 175
D E+D D + D + +++E E A R KE AK KA E ++++G
Sbjct: 243 DEDEDDDDDEDDEDEDDDDEDEEEEEEEEEPVKEA-PGKRKKEMAKQKAAPEAKKQKVEG 301
Query: 176 KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFV 235
T LF+GN+ N + E + I DV +L R F +V
Sbjct: 302 TE-----PTTAFNLFVGNLNFNKSAPELKTGISDV---FAKNDLAVVDVRIGMTRKFGYV 353
Query: 236 LYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
+ + D + L K+ GN I PK S + L KN+P +
Sbjct: 354 DF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKERDARTLLAKNLPYKVT 406
Query: 296 TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+++KE+F+ E+ ++V GKS + +I + + A K ++ + EIDG+S
Sbjct: 407 QDELKEVFEDAAEI-RLVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDGRS 459
Score = 127 (49.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ GL +D +EE L++ + G V R++ D+E+G SKGF FV F S+E AK A + +
Sbjct: 575 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631
Query: 169 HSKELKGKTIRCSLSETK 186
E+ G + ++ K
Sbjct: 632 EDGEIDGNKVTLDWAKPK 649
Score = 50 (22.7 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPT-------ASVGEDEKDK 95
E+D S E + +D+D E+E +P A EDE D+
Sbjct: 149 EEDDSEEDDEDDEDEDEDEDEIEPAVMKAAAAAPASEDEDDE 190
Score = 48 (22.0 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALP 103
+K A ++D+ + DDD +E+E E+E+++ + P
Sbjct: 230 AKNVAEDEDEEEDDEDEDDDDDEDDEDEDDDDEDEEEEEEEEEPVKEAP 278
Score = 40 (19.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
+K G + K + ++ DD EE+++ EDE +
Sbjct: 134 AKNGKNAKKEDSDEEEEDDS----EEDDEDDEDEDEDEDE 169
Score = 38 (18.4 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
+KAG ++ D A P EE+ + EDE+D
Sbjct: 5 AKAGKNQGDPKKMA-----PPPKEVEEDSEDEEMSEDEED 39
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 203 (76.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 78/295 (26%), Positives = 149/295 (50%)
Query: 80 EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLM 139
E+ K S+ E++K++ A+ L F+ LP +E++++++ E + EVRL+
Sbjct: 351 EKAKSKESLKENKKERDARTL---------FVKNLPYRVTEDEMKNVFE---NALEVRLV 398
Query: 140 KDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWT 199
+KE G SKG A++ F+++ A+KA++E E+ G+ + + K++ K
Sbjct: 399 LNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQ---ESQKGGG 454
Query: 200 EDEFRKVIED---VGPGVETI-EL------IKDPQN-PSRNRGFSFVLYYNNACADYSRQ 248
E E + +I + ET+ EL IK PQN R +G++FV + A+ +++
Sbjct: 455 ERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEF---PTAEDAKE 511
Query: 249 KMLNAN-FKLDGNTPTISWADPKSTPDHSAAAS----QVKALYVKNIPDNTSTEKIKELF 303
+ + N +++G + ++ P + A Q K L+V+ + ++T+ E ++E F
Sbjct: 512 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF 571
Query: 304 QRHGEVT-KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDG-KSHLHF 355
+ G ++ ++V + FGF+ ++ A KA K+ E EIDG K L F
Sbjct: 572 E--GSISARIVTDRDTGSSKGFGFVDFSSPEDA-KAAKEAMEDGEIDGNKVTLDF 623
Score = 173 (66.0 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 69/310 (22%), Positives = 134/310 (43%)
Query: 61 EKDQSAEANRNDDDTPHVE---EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKD 117
E D+ + ++D+ P E + +K A+ E K + P + +F+ L
Sbjct: 230 EDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTEIKAPASAFSLFVKNLTPT 289
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKELKG 175
E+LR I + F + ++ E G SK F +V F S E KA+ +L+ K+L G
Sbjct: 290 KDYEELRTA---IKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QLNGKKLMG 345
Query: 176 KTIRCSLSETKNRLFIGNVPKN----WTEDEFRKVIEDVGPGV--ETIELIKDPQNPSRN 229
I+ +++K L ++ + ++ +V ED V +E+ +
Sbjct: 346 LEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSS 405
Query: 230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ--VKALYV 287
+G +++ + A A+ + ++ ++DG I + KS + + K L V
Sbjct: 406 KGMAYIEFKTEAEAEKALEEKQGT--EVDGRAMVIDYTGEKSQQESQKGGGERESKTLIV 463
Query: 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE 346
N+ S E ++ELF++ T + MP G+ + + F+ + A +A+ E
Sbjct: 464 NNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTE 520
Query: 347 IDGKS-HLHF 355
I+G++ L F
Sbjct: 521 IEGRAIRLEF 530
Score = 146 (56.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 68/291 (23%), Positives = 121/291 (41%)
Query: 62 KDQSAEANRNDDDTPHVEEEEKPTASVGEDEK-DKHAQLLALPPNGSEVFIGGLPKDASE 120
K +S E DD+ EE+E+ S EDE D + P + E
Sbjct: 164 KQESEEEEEEDDE----EEDEEDDES--EDEAMDTTPAPVKKPTPAKATPAKAKAESEDE 217
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
ED D E D + +++ E R KE A K+ E K+ + K
Sbjct: 218 EDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTEIKAPAS 277
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
+ S LF+ N+ +E R I++ G + ++ + + + S R F +V + +
Sbjct: 278 AFS-----LFVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSSKR-FGYVDFLS- 328
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
D + LN KL G + A K + + + L+VKN+P + +++K
Sbjct: 329 -AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMK 386
Query: 301 ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+F+ EV V+ G S + +I + + A KA+++ + E+DG++
Sbjct: 387 NVFENALEVRLVLNKEGSS--KGMAYIEFKTEAEAEKALEEKQGTEVDGRA 435
Score = 134 (52.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 46/178 (25%), Positives = 84/178 (47%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+ + L ASEE L++L + + M G KG+AFV F + E AK+A++
Sbjct: 461 LIVNNLSYAASEETLQELFKKATSI----KMPQNNQGRPKGYAFVEFPTAEDAKEALNSC 516
Query: 169 HSKELKGKTIRCSLS----------------ETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
++ E++G+ IR S + LF+ + ++ TE+ R+ E
Sbjct: 517 NNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE---- 572
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
G + ++ D S ++GF FV + + A +++ M + ++DGN T+ +A PK
Sbjct: 573 GSISARIVTDRDTGS-SKGFGFVDFSSPEDAKAAKEAMEDG--EIDGNKVTLDFAKPK 627
Score = 57 (25.1 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEK 93
+KA A +D+ E + ++D+ +EEE S EDEK
Sbjct: 208 AKAKAESEDEEDEEDEDEDEEDEDDEEEDEEES--EDEK 244
Score = 53 (23.7 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 56 KAGASEKDQSAEANRNDDDTPHV-EEEEKPTASVGEDEKDKHAQLLALPP 104
K + E+D+ E + D+D +EEE+P V K A + A P
Sbjct: 109 KEESEEEDEDDEDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKP 158
Score = 47 (21.6 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 60 SEKDQSAEANRNDDDTPHVEEEEK 83
++K++S E + +D+D E+EE+
Sbjct: 107 AKKEESEEEDEDDEDDEEDEDEEE 130
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 203 (76.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 78/295 (26%), Positives = 149/295 (50%)
Query: 80 EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLM 139
E+ K S+ E++K++ A+ L F+ LP +E++++++ E + EVRL+
Sbjct: 353 EKAKSKESLKENKKERDARTL---------FVKNLPYRVTEDEMKNVFE---NALEVRLV 400
Query: 140 KDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWT 199
+KE G SKG A++ F+++ A+KA++E E+ G+ + + K++ K
Sbjct: 401 LNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQ---ESQKGGG 456
Query: 200 EDEFRKVIED---VGPGVETI-EL------IKDPQN-PSRNRGFSFVLYYNNACADYSRQ 248
E E + +I + ET+ EL IK PQN R +G++FV + A+ +++
Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEF---PTAEDAKE 513
Query: 249 KMLNAN-FKLDGNTPTISWADPKSTPDHSAAAS----QVKALYVKNIPDNTSTEKIKELF 303
+ + N +++G + ++ P + A Q K L+V+ + ++T+ E ++E F
Sbjct: 514 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF 573
Query: 304 QRHGEVT-KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDG-KSHLHF 355
+ G ++ ++V + FGF+ ++ A KA K+ E EIDG K L F
Sbjct: 574 E--GSISARIVTDRDTGSSKGFGFVDFSSPEDA-KAAKEAMEDGEIDGNKVTLDF 625
Score = 165 (63.1 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 73/318 (22%), Positives = 138/318 (43%)
Query: 61 EKDQSAEANRNDDDTPHVEE--EEKPTASV-GEDEKD---KHA-----QLLALPPNGSEV 109
E+D+ + DD+ EE +EKP G+ +K+ K A + P + +
Sbjct: 224 EEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTETPASAFSL 283
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDE 167
F+ L E+LR I + F + ++ E G SK F +V F S E KA+ +
Sbjct: 284 FVKNLTPTKDYEELRTA---IKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-Q 339
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKN----WTEDEFRKVIEDVGPGV--ETIELIK 221
L+ K+L G I+ +++K L ++ + ++ +V ED V +E+
Sbjct: 340 LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRL 399
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
++G +++ + A A+ + ++ ++DG I + KS + +
Sbjct: 400 VLNKEGSSKGMAYIEFKTEAEAEKALEEKQGT--EVDGRAMVIDYTGEKSQQESQKGGGE 457
Query: 282 --VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
K L V N+ S E ++ELF++ T + MP G+ + + F+ + A +A
Sbjct: 458 RESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEA 514
Query: 339 VKDTEKYEIDGKS-HLHF 355
+ EI+G++ L F
Sbjct: 515 LNSCNNTEIEGRAIRLEF 532
Score = 144 (55.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 69/291 (23%), Positives = 123/291 (42%)
Query: 62 KDQSAEANRNDDDTPHVEEEEKPTASVGEDEK-DKHAQLLALPPNGSEVFIGGLPKDASE 120
K +S E DD+ EE+E+ S EDE D + P + E
Sbjct: 168 KQESEEEEEEDDE----EEDEEDDES--EDEAMDTTPAPVKKPTPAKATPAKAKAESEDE 221
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
ED D E D + +++ E R KE A K+ E +K+ K +T
Sbjct: 222 EDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPE--AKKKKTETPAS 279
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
+ S LF+ N+ +E R I++ G + ++ + + + S R F +V + +
Sbjct: 280 AFS-----LFVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSSKR-FGYVDFLS- 330
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
D + LN KL G + A K + + + L+VKN+P + +++K
Sbjct: 331 -AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMK 388
Query: 301 ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+F+ EV V+ G S + +I + + A KA+++ + E+DG++
Sbjct: 389 NVFENALEVRLVLNKEGSS--KGMAYIEFKTEAEAEKALEEKQGTEVDGRA 437
Score = 134 (52.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 46/178 (25%), Positives = 84/178 (47%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+ + L ASEE L++L + + M G KG+AFV F + E AK+A++
Sbjct: 463 LIVNNLSYAASEETLQELFKKATSI----KMPQNNQGRPKGYAFVEFPTAEDAKEALNSC 518
Query: 169 HSKELKGKTIRCSLS----------------ETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
++ E++G+ IR S + LF+ + ++ TE+ R+ E
Sbjct: 519 NNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE---- 574
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
G + ++ D S ++GF FV + + A +++ M + ++DGN T+ +A PK
Sbjct: 575 GSISARIVTDRDTGS-SKGFGFVDFSSPEDAKAAKEAMEDG--EIDGNKVTLDFAKPK 629
Score = 57 (25.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEK 93
+KA A +D+ E + ++D+ +EEE S EDEK
Sbjct: 212 AKAKAESEDEEDEEDEDEDEEDEDDEEEDEEES--EDEK 248
Score = 53 (23.7 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 56 KAGASEKDQSAEANRNDDDTPHV-EEEEKPTASVGEDEKDKHAQLLALPP 104
K + E+D+ E + D+D +EEE+P V K A + A P
Sbjct: 113 KEESEEEDEDDEDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKP 162
Score = 47 (21.6 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 60 SEKDQSAEANRNDDDTPHVEEEEK 83
++K++S E + +D+D E+EE+
Sbjct: 111 AKKEESEEEDEDDEDDEEDEDEEE 134
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 203 (76.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 78/295 (26%), Positives = 149/295 (50%)
Query: 80 EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLM 139
E+ K S+ E++K++ A+ L F+ LP +E++++++ E + EVRL+
Sbjct: 353 EKAKSKESLKENKKERDARTL---------FVKNLPYRVTEDEMKNVFE---NALEVRLV 400
Query: 140 KDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWT 199
+KE G SKG A++ F+++ A+KA++E E+ G+ + + K++ K
Sbjct: 401 LNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQ---ESQKGGG 456
Query: 200 EDEFRKVIED---VGPGVETI-EL------IKDPQN-PSRNRGFSFVLYYNNACADYSRQ 248
E E + +I + ET+ EL IK PQN R +G++FV + A+ +++
Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEF---PTAEDAKE 513
Query: 249 KMLNAN-FKLDGNTPTISWADPKSTPDHSAAAS----QVKALYVKNIPDNTSTEKIKELF 303
+ + N +++G + ++ P + A Q K L+V+ + ++T+ E ++E F
Sbjct: 514 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF 573
Query: 304 QRHGEVT-KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDG-KSHLHF 355
+ G ++ ++V + FGF+ ++ A KA K+ E EIDG K L F
Sbjct: 574 E--GSISARIVTDRDTGSSKGFGFVDFSSPEDA-KAAKEAMEDGEIDGNKVTLDF 625
Score = 165 (63.1 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 73/318 (22%), Positives = 138/318 (43%)
Query: 61 EKDQSAEANRNDDDTPHVEE--EEKPTASV-GEDEKD---KHA-----QLLALPPNGSEV 109
E+D+ + DD+ EE +EKP G+ +K+ K A + P + +
Sbjct: 224 EEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTETPASAFSL 283
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDE 167
F+ L E+LR I + F + ++ E G SK F +V F S E KA+ +
Sbjct: 284 FVKNLTPTKDYEELRTA---IKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-Q 339
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKN----WTEDEFRKVIEDVGPGV--ETIELIK 221
L+ K+L G I+ +++K L ++ + ++ +V ED V +E+
Sbjct: 340 LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRL 399
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
++G +++ + A A+ + ++ ++DG I + KS + +
Sbjct: 400 VLNKEGSSKGMAYIEFKTEAEAEKALEEKQGT--EVDGRAMVIDYTGEKSQQESQKGGGE 457
Query: 282 --VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
K L V N+ S E ++ELF++ T + MP G+ + + F+ + A +A
Sbjct: 458 RESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEA 514
Query: 339 VKDTEKYEIDGKS-HLHF 355
+ EI+G++ L F
Sbjct: 515 LNSCNNTEIEGRAIRLEF 532
Score = 144 (55.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 69/291 (23%), Positives = 123/291 (42%)
Query: 62 KDQSAEANRNDDDTPHVEEEEKPTASVGEDEK-DKHAQLLALPPNGSEVFIGGLPKDASE 120
K +S E DD+ EE+E+ S EDE D + P + E
Sbjct: 168 KQESEEEEEEDDE----EEDEEDDES--EDEAMDTTPAPVKKPTPAKATPAKAKAESEDE 221
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
ED D E D + +++ E R KE A K+ E +K+ K +T
Sbjct: 222 EDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPE--AKKKKTETPAS 279
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
+ S LF+ N+ +E R I++ G + ++ + + + S R F +V + +
Sbjct: 280 AFS-----LFVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSSKR-FGYVDFLS- 330
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
D + LN KL G + A K + + + L+VKN+P + +++K
Sbjct: 331 -AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMK 388
Query: 301 ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+F+ EV V+ G S + +I + + A KA+++ + E+DG++
Sbjct: 389 NVFENALEVRLVLNKEGSS--KGMAYIEFKTEAEAEKALEEKQGTEVDGRA 437
Score = 134 (52.2 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 46/178 (25%), Positives = 84/178 (47%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+ + L ASEE L++L + + M G KG+AFV F + E AK+A++
Sbjct: 463 LIVNNLSYAASEETLQELFKKATSI----KMPQNNQGRPKGYAFVEFPTAEDAKEALNSC 518
Query: 169 HSKELKGKTIRCSLS----------------ETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
++ E++G+ IR S + LF+ + ++ TE+ R+ E
Sbjct: 519 NNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE---- 574
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
G + ++ D S ++GF FV + + A +++ M + ++DGN T+ +A PK
Sbjct: 575 GSISARIVTDRDTGS-SKGFGFVDFSSPEDAKAAKEAMEDG--EIDGNKVTLDFAKPK 629
Score = 57 (25.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEK 93
+KA A +D+ E + ++D+ +EEE S EDEK
Sbjct: 212 AKAKAESEDEEDEEDEDEDEEDEDDEEEDEEES--EDEK 248
Score = 53 (23.7 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 56 KAGASEKDQSAEANRNDDDTPHV-EEEEKPTASVGEDEKDKHAQLLALPP 104
K + E+D+ E + D+D +EEE+P V K A + A P
Sbjct: 113 KEESEEEDEDDEDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKP 162
Score = 47 (21.6 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 60 SEKDQSAEANRNDDDTPHVEEEEK 83
++K++S E + +D+D E+EE+
Sbjct: 111 AKKEESEEEDEDDEDDEEDEDEEE 134
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 204 (76.9 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 72/283 (25%), Positives = 144/283 (50%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP + +KD+ A+ L L N LP ++++L+++ E D E+RL+
Sbjct: 389 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 433
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN--WT 199
+ G+SKG A++ F+++ A+K ++E E+ G++I + K + KN W+
Sbjct: 434 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWS 492
Query: 200 EDEFRKVIEDVGPGV--ETIEL-------IKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
+ V+ ++ ET++ IK PQN + +++G++F+ + A + +++
Sbjct: 493 GESKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 549
Query: 250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N + ++G + P+ +P+ A + K L+VK + ++T+ E +KE F G
Sbjct: 550 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFD--GS 605
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
+ ++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 606 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 647
Score = 193 (73.0 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 78/321 (24%), Positives = 150/321 (46%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPP------NGSE------ 108
+ D+ + +++ EEEE+P K + A+ A P G+E
Sbjct: 259 DDDEDDDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFN 318
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAID 166
+F+G L + S +L+ I D+F + D G S+ F +V F S E +KA+
Sbjct: 319 LFVGNLNFNKSAPELKT---GISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL- 374
Query: 167 ELHSKELKGKTIRCSLSETKNR--------LFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
EL ++ G I+ + K+ L N+P T+DE ++V ED VE I
Sbjct: 375 ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VE-IR 430
Query: 219 LI-KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-TPDH- 275
L+ KD +++G +++ + A A+ + ++ ++DG + ++ + K + DH
Sbjct: 431 LVSKD----GKSKGIAYIEFKTEADAEKTLEEKQGT--EIDGRSISLYYTGEKGQSQDHR 484
Query: 276 ----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
S + + K L + N+ + + E ++E+F++ T + +P ++GK + + FI +A
Sbjct: 485 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFA 541
Query: 331 ERSSALKAVKDTEKYEIDGKS 351
A +A+ K EI+G++
Sbjct: 542 SFEDAKEALNSCNKREIEGRA 562
Score = 163 (62.4 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 46/192 (23%), Positives = 92/192 (47%)
Query: 85 TASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES 144
T G+ + + + + + L A+EE L+++ E + + ++
Sbjct: 474 TGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHI----KVPQNQN 529
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVP------KNW 198
G+SKG+AF+ F S E AK+A++ + +E++G+ IR L + + P K
Sbjct: 530 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL 589
Query: 199 TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258
+ED + +++ G ++ D + S ++GF FV + + A +++ M + ++D
Sbjct: 590 SEDTTEETLKESFDGSIRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EID 646
Query: 259 GNTPTISWADPK 270
GN T+ WA PK
Sbjct: 647 GNKVTLDWAKPK 658
Score = 136 (52.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 73/304 (24%), Positives = 125/304 (41%)
Query: 67 EANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLP----------- 115
E + +DDD EEEE ED+ ++ + +P G + + +P
Sbjct: 184 EDDEDDDDDDDEEEEEDEEDEEDEDDSEEEPMEI-VPAKGKKAPVKAVPVKAKSTAEDED 242
Query: 116 -------KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK-KAIDE 167
D EE+ D E D E +++E E R KE AK KA E
Sbjct: 243 EEDDDDDDDEEEEEEDDDDEDDDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPE 302
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
++++G S + LF+GN+ N + E + I D+ + ++ S
Sbjct: 303 AKKQKVEGTEPTTSFN-----LFVGNLNFNKSAPELKTGISDLF-AKNDLAVVDVRIGVS 356
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYV 287
R F +V + + D + L K+ GN I PK S + L
Sbjct: 357 RK--FGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKDRDARTLLA 407
Query: 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
KN+P + +++KE+F+ E+ ++V GKS + +I + + A K +++ + EI
Sbjct: 408 KNLPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQGTEI 464
Query: 348 DGKS 351
DG+S
Sbjct: 465 DGRS 468
Score = 55 (24.4 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
KA ++ +D+ E + +DDD EE++ E+E+++ +
Sbjct: 233 KAKSTAEDEDEEDDDDDDDEEEEEEDDDDEDDDDEEEEEEEEE 275
Score = 49 (22.3 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
+ D E +DDD +EEE+ E+E++
Sbjct: 248 DDDDEEEEEEDDDDEDDDDEEEEEEEEEEEEEEE 281
Score = 48 (22.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHA 97
+ ++ E + +D+D EEEE+ E+E K A
Sbjct: 250 DDEEEEEEDDDDEDDDDEEEEEEEEEEEEEEEPVKEA 286
Score = 38 (18.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 66 AEANRNDDDT------PHVEEEEKPTASVGEDEKDK 95
A+A +N D+ P EE+ + EDE D+
Sbjct: 5 AKAGKNQGDSKKMAPPPKEVEEDSEDEEMSEDEDDE 40
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 217 (81.4 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 79/275 (28%), Positives = 134/275 (48%)
Query: 55 SKAG-ASEKDQSAEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
S AG + + ANRN DD + T + GE E D P+ ++
Sbjct: 309 SAAGLVNNNNNPCSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKM 359
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
F+G +PK E LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH
Sbjct: 360 FVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALH 419
Query: 170 S-KELKGK--TIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+ K L G I+ ++++NR LF+G + K E++ RK+ E G +E +++D
Sbjct: 420 NVKTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD 478
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWADPKSTPDHSAAAS 280
QN +++G +FV + A + + L+ N ++G T P + +AD + +
Sbjct: 479 -QN-GQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKEKEQKKI-Q 535
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315
Q++A + N+ N + L Q VT ++P
Sbjct: 536 QIQA-NLWNLASNINIP----LGQTATSVTTPILP 565
Score = 127 (49.8 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 37/156 (23%), Positives = 79/156 (50%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
++F+G VPK+ E + R++ E+ G V +I +++D ++G FV +Y A ++
Sbjct: 358 KMFVGQVPKSMDESQLREMFEEYG-AVHSINVLRDKAT-GISKGCCFVTFYTRHAALKAQ 415
Query: 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
+ N L+G I + P S ++ K L+V + + +++LF+ HG
Sbjct: 416 DALHNVK-TLNGMYHPI-----QMKPADSENRNERK-LFVGMLNKKLNENDVRKLFEVHG 468
Query: 308 EVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
+ + + ++G+ + F+ +A + +A+ A+K T
Sbjct: 469 AIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVT 504
Score = 119 (46.9 bits), Expect = 0.00055, P = 0.00055
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 723 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 782
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 783 AIKAMNGFQVGTKRLKVQLKKPKD 806
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 215 (80.7 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 67/253 (26%), Positives = 117/253 (46%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETK---NRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S R +GN+ KN K + D +I K
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNA--NFKLDGNTPTISW--ADPKSTPDHSAA 278
N +RGF FV + + A QK +N L+ + + K + A
Sbjct: 131 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ + + +++LF + G+ V VM R FGFI++ + A K
Sbjct: 187 ALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGK 350
AV E+ G+
Sbjct: 247 AVDHMNGKEVSGQ 259
Score = 137 (53.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 27/89 (30%), Positives = 52/89 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + +++ L D E+ L+DL G V++M+D +G+S+G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F F++F E A+KA+D ++ KE+ G+ +
Sbjct: 233 FGFINFEKHEEAQKAVDHMNGKEVSGQLL 261
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 209 (78.6 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 64/251 (25%), Positives = 131/251 (52%)
Query: 114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173
LP ++++L+++ E D E+RL+ + G+SKG A++ F+++ A+K +E E+
Sbjct: 400 LPYKVTQDELKEVFE---DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 454
Query: 174 KGKTIRCSLSETK--NRLFIGNVPKNWTEDEFRKVIEDVGPGV--ETIE-------LIKD 222
G++I + K N+ + G W+ + V+ ++ ET++ IK
Sbjct: 455 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 514
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDHSAAAS 280
PQN + +++G++F+ + A + +++ + + N + ++G + P+ +P+ A +
Sbjct: 515 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN--ARSQ 569
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
K L+VK + ++T+ E +KE F G V ++ ++G + FGF+ + A KA
Sbjct: 570 PSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAA 626
Query: 340 KDT-EKYEIDG 349
K+ E EIDG
Sbjct: 627 KEAMEDGEIDG 637
Score = 182 (69.1 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 76/321 (23%), Positives = 147/321 (45%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPP------NGSE------ 108
+ + + + DD+ EEEE+P K + A+ A P G+E
Sbjct: 249 DDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFN 308
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAID 166
+F+G L + S +L+ I DVF + D G ++ F +V F S E +KA+
Sbjct: 309 LFVGNLNFNKSAPELKT---GISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKAL- 364
Query: 167 ELHSKELKGKTIRCSLSETKNR--------LFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
EL ++ G I+ + K+ L N+P T+DE ++V ED I
Sbjct: 365 ELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAE----IR 420
Query: 219 LI-KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-TPDH- 275
L+ KD +++G +++ + A A+ + ++ ++DG + ++ + K D+
Sbjct: 421 LVSKD----GKSKGIAYIEFKTEADAEKTFEEKQGT--EIDGRSISLYYTGEKGQNQDYR 474
Query: 276 ----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
S + + K L + N+ + + E ++E+F++ T + +P ++GK + + FI +A
Sbjct: 475 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFA 531
Query: 331 ERSSALKAVKDTEKYEIDGKS 351
A +A+ K EI+G++
Sbjct: 532 SFEDAKEALNSCNKREIEGRA 552
Score = 163 (62.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 45/166 (27%), Positives = 89/166 (53%)
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
+ L A+EE L+++ E F +++ ++ ++G+SKG+AF+ F S E AK+A++ +
Sbjct: 490 LSNLSYSATEETLQEVFEKA--TF-IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 545
Query: 171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+E++G+ IR L + + P K +ED + +++ G ++ D +
Sbjct: 546 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRE 605
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
S ++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 606 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 648
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 74/297 (24%), Positives = 122/297 (41%)
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIG-GLP 115
A E D+ E + +DDD + EE+ + K K A+++ P V
Sbjct: 183 ASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGK-KAAKVV--PVKAKNVAEDEDEE 239
Query: 116 KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK-KAIDELHSKELK 174
+D +ED D + D E +++E E R KE AK KA E ++++
Sbjct: 240 EDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVE 299
Query: 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
G T LF+GN+ N + E + I DV +L R F +
Sbjct: 300 GTE-----PTTAFNLFVGNLNFNKSAPELKTGISDV---FAKNDLAVVDVRIGMTRKFGY 351
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
V + + D + L K+ GN I PK S + L KN+P
Sbjct: 352 VDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKERDARTLLAKNLPYKV 404
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ +++KE+F+ E+ ++V GKS + +I + + A K ++ + EIDG+S
Sbjct: 405 TQDELKEVFEDAAEI-RLVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDGRS 458
Score = 127 (49.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ GL +D +EE L++ + G V R++ D+E+G SKGF FV F S+E AK A + +
Sbjct: 574 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 169 HSKELKGKTIRCSLSETK 186
E+ G + ++ K
Sbjct: 631 EDGEIDGNKVTLDWAKPK 648
Score = 46 (21.3 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 16/70 (22%), Positives = 28/70 (40%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLP 115
K GA+ + A+ +N EEE+ + ED++D+ + P + P
Sbjct: 124 KKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKA-AAAAP 182
Query: 116 KDASEEDLRD 125
E+D D
Sbjct: 183 ASEDEDDEDD 192
Score = 38 (18.4 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
+KAG ++ D A P EE+ + EDE+D
Sbjct: 5 AKAGKNQGDPKKMA-----PPPKEVEEDSEDEEMSEDEED 39
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 192 (72.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 47/142 (33%), Positives = 84/142 (59%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DLR L E G ++E+ ++KD+ +G KG AF+++ ++E A KA
Sbjct: 48 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTA 107
Query: 168 LHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G + I+ +++++R LF+G + K ED+ R++ E G +E +
Sbjct: 108 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFG-SIEECTI 166
Query: 220 IKDPQNPSRNRGFSFVLYYNNA 241
++ P S+ G +FV Y +A
Sbjct: 167 LRGPDGNSK--GCAFVKYSTHA 186
Score = 104 (41.7 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K E+D+R L E G + E +++ + G SKG AFV + + A+ AI
Sbjct: 136 KLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSTHAEAQAAISA 194
Query: 168 LHSKE 172
LH +
Sbjct: 195 LHGSQ 199
Score = 63 (27.2 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 17/84 (20%), Positives = 36/84 (42%)
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGF 326
P P + L++ ++P ++ ++F G V +KV + + + FGF
Sbjct: 421 PPIIPQQQREGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGF 480
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+ + SA A++ ++I K
Sbjct: 481 VSFDNPGSAQAAIQSMNGFQIGMK 504
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 191 (72.3 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 56/190 (29%), Positives = 103/190 (54%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV+F +++ A +A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LFIG + K TE++ R + G +E
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
+++ P SR G +FV + A A + + M A ++G ++P + +AD +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 193 EQKRMAQQLQ 202
Score = 146 (56.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 42/156 (26%), Positives = 75/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G VP+ W+E + R++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L++ I + I+ +F
Sbjct: 75 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ + R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 166
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 457
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 458 AIQSMNGFQIGMKRLKVQLKRSKN 481
Score = 63 (27.2 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + ++F G V KV + + + FGF+ Y SA A++
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 343 EKYEIDGK 350
++I K
Sbjct: 463 NGFQIGMK 470
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 191 (72.3 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 56/190 (29%), Positives = 103/190 (54%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV+F +++ A +A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LFIG + K TE++ R + G +E
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
+++ P SR G +FV + A A + + M A ++G ++P + +AD +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 193 EQKRMAQQLQ 202
Score = 146 (56.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 42/156 (26%), Positives = 75/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G VP+ W+E + R++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L++ I + I+ +F
Sbjct: 75 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ + R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 166
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 457
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 458 AIQSMNGFQIGMKRLKVQLKRSKN 481
Score = 63 (27.2 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + ++F G V KV + + + FGF+ Y SA A++
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 343 EKYEIDGK 350
++I K
Sbjct: 463 NGFQIGMK 470
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 193 (73.0 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 46/141 (32%), Positives = 85/141 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DL+ + E G ++E+ ++KDK +G KG AF+++ ++E A KA +
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 168 LHS-KELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
LH K L G + I+ ++++ R LF+G + K ++ + RK+ E G +E ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFG-SIEECTVL 126
Query: 221 KDPQNPSRNRGFSFVLYYNNA 241
+ P S+ G +FV Y +NA
Sbjct: 127 RGPDGASK--GCAFVKYQSNA 145
Score = 117 (46.2 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K S+ D+R + EP G + E +++ + G SKG AFV ++S A+ AI
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISA 153
Query: 168 LH-SKELKG 175
LH S+ L G
Sbjct: 154 LHGSRTLPG 162
Score = 116 (45.9 bits), Expect = 0.00053, P = 0.00053
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ ++ + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 364 PEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQA 423
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 424 AIQAMNGFQIGMKRLKVQLKRPKD 447
Score = 59 (25.8 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 14/68 (20%), Positives = 34/68 (50%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + ++ ++F G V KV + + + FGF+ + +SA A++
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428
Query: 343 EKYEIDGK 350
++I K
Sbjct: 429 NGFQIGMK 436
Score = 52 (23.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+FI ++P+ +T+ E ++ G V + ++ D + ++++ F FV + N A A + Q
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 426
Query: 249 KM 250
M
Sbjct: 427 AM 428
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 210 (79.0 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 71/317 (22%), Positives = 149/317 (47%)
Query: 56 KAG-ASEKDQSAEANRNDDDTPHVEEEEKPTASV---GEDEKDKH---AQLLALPPNGSE 108
KAG K++S E + +D++ EEEE P E +K+K A+ G
Sbjct: 232 KAGMVKAKEESEEEDDDDEEDDDEEEEETPATPAKRKAETKKEKGTPPAKKAKTDGEGFS 291
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVF--EVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+F+G L + +D +L I F E ++D G +K F +V F S+E +KA+
Sbjct: 292 LFLGNLNNN---KDFDELKSAISKFFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKAL- 347
Query: 167 ELHSKELKGKTIRCSLSETK-----NR-------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
EL+ K+L G+ ++ + +K N+ LF+ N+P + T+D+ R++ +
Sbjct: 348 ELNGKKLLGQPVKLDKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFD------ 401
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ +++ N +RG +++ + A A+ + ++ ++ + G + + + KS
Sbjct: 402 QAVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSD--VQGRSIIVDFTGDKSRQG 459
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSS 334
A S K L V N+ + S + ++ +F++ + +P + + F+ +
Sbjct: 460 GRGAPSASKVLVVNNLAFSASEDSLQSVFEK---AVSIRIPQNNGRPKGYAFVEFENVED 516
Query: 335 ALKAVKDTEKYEIDGKS 351
+ +A+++ +I+G+S
Sbjct: 517 SKEALENCNNTDIEGRS 533
Score = 190 (71.9 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 61/258 (23%), Positives = 128/258 (49%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ LP +++DLR++ + D+ R+ +G S+G A++ F+++ A+KA++E
Sbjct: 382 LFVKNLPYSITQDDLREIFDQAVDI---RVPMGN-TGTSRGIAYIEFKTEAIAEKALEEA 437
Query: 169 HSKELKGKTIRCSLSETKNR------------LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+++G++I + K+R L + N+ + +ED + V E +
Sbjct: 438 QGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFE------KA 491
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWA--DPKSTP 273
+ I+ PQN R +G++FV + N + S++ + N N ++G + + ++ D +
Sbjct: 492 VS-IRIPQNNGRPKGYAFVEFEN---VEDSKEALENCNNTDIEGRSIRLEYSQNDRERGG 547
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
+ K L+VK + D+T+ + +K+ F G + + +G + FGF+ + +
Sbjct: 548 GGRGNSGPTKTLFVKGLSDDTTDQTLKDSFD--GAIAARIATDRDTGSSKGFGFVDF-DN 604
Query: 333 SSALKAVKDT-EKYEIDG 349
KA K+ + EIDG
Sbjct: 605 EQDCKAAKEAMDDGEIDG 622
Score = 153 (58.9 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 76/310 (24%), Positives = 129/310 (41%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKP-----TASVGEDEKDKHAQLLALPPNGSEVF 110
KA +K AE + +DDD EEEE P A+ K A+ A E
Sbjct: 149 KAAPVKKAAPAEESEDDDDDDESEEEEAPPPKKAAAAAKPAAKAPAAKAPAAKEESDEEE 208
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF----AKKAID 166
+D SEE+ D P + ++K KE E + +E A A
Sbjct: 209 DDDEEEDDSEEEEMDTT-PAPKAKKAGMVKAKEESEEEDDDDEEDDDEEEEETPATPAKR 267
Query: 167 ELHSKELKGKTIRCSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ +K+ KG T ++T LF+GN+ N DE + I E +E I+D
Sbjct: 268 KAETKKEKG-TPPAKKAKTDGEGFSLFLGNLNNNKDFDELKSAISKFF-SKEGLE-IQDV 324
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQV 282
+ + F +V + ++ QK L N K L G + A K +
Sbjct: 325 RLGGTKK-FGYVDF----ASEEELQKALELNGKKLLGQPVKLDKARSKENSQENKKERDA 379
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVKD 341
+ L+VKN+P + + + ++E+F + + +P G +G R +I + + A KA+++
Sbjct: 380 RTLFVKNLPYSITQDDLREIFD---QAVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALEE 436
Query: 342 TEKYEIDGKS 351
+ ++ G+S
Sbjct: 437 AQGSDVQGRS 446
Score = 136 (52.9 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 45/178 (25%), Positives = 88/178 (49%)
Query: 104 PNGSEVFI-GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P+ S+V + L ASE+ L+ + E +R+ ++ +G KG+AFV F + E +K
Sbjct: 464 PSASKVLVVNNLAFSASEDSLQSVFEK---AVSIRIPQN--NGRPKGYAFVEFENVEDSK 518
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFIG----NVP------KNWTEDEFRKVIEDVGP 212
+A++ ++ +++G++IR S+ G + P K ++D + ++D
Sbjct: 519 EALENCNNTDIEGRSIRLEYSQNDRERGGGGRGNSGPTKTLFVKGLSDDTTDQTLKDSFD 578
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
G + D S ++GF FV + N +++ M + ++DGN T+ +A PK
Sbjct: 579 GAIAARIATDRDTGS-SKGFGFVDFDNEQDCKAAKEAMDDG--EIDGNKVTLDYAKPK 633
Score = 51 (23.0 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDA 118
A+ ++S+E + +DDD EEE P K A P + P +
Sbjct: 106 AAPAEESSEEDDDDDDDDESEEEAPPPKKAPA----KATPAKATPAKKAAPVKKAAPAEE 161
Query: 119 SEED 122
SE+D
Sbjct: 162 SEDD 165
Score = 44 (20.5 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKP 84
K G + Q +E + +DDD EEE P
Sbjct: 60 KNGKAAAKQESE-DEDDDDEDDESEEEAP 87
Score = 40 (19.1 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKP 84
KA K+ E++ D D EEEE P
Sbjct: 17 KAPPPPKEVEEESSEEDSDDD--EEEEAP 43
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 207 (77.9 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 74/283 (26%), Positives = 141/283 (49%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP G D K A L N L + +E++L+++ E D E+RL+
Sbjct: 380 EKPK---GRDSKKVRAARTLLAKN--------LSFNITEDELKEVFE---DALEIRLVS- 424
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN--WT 199
+ G+SKG A++ F+S+ A+K ++E E+ G+++ + K + KN W+
Sbjct: 425 -QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ-ERTGKNSTWS 482
Query: 200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
+ V+ ++ ET++ IK PQN +++G++F+ + A + +++
Sbjct: 483 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEF---ASFEDAKEA 539
Query: 250 MLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N +++G T + P+ +P+ A + K L+VK + ++T+ E +KE F+ G
Sbjct: 540 LNSCNKMEIEGRTIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFE--GS 595
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
V ++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 596 VRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 637
Score = 194 (73.4 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 77/317 (24%), Positives = 151/317 (47%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN---GSE------VFI 111
E+D+ E + +++ EE KP + E K ++ GSE +FI
Sbjct: 253 EEDEEEEEDEEEEEEEEEEEPVKPAPGKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFI 312
Query: 112 GGLPKDASEEDLR-DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
G L + S +L+ + EP ++ ++ D +G ++ F +V F S E +KA+ EL
Sbjct: 313 GNLNPNKSVAELKVAISEPFAKN-DLAVV-DVRTGTNRKFGYVDFESAEDLEKAL-ELTG 369
Query: 171 KELKGKTIRCSLSETKNR----------LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
++ G I+ L + K R L N+ N TEDE ++V ED +E I L+
Sbjct: 370 LKVFGNEIK--LEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA---LE-IRLV 423
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-----TPDH 275
+++G +++ + + A A+ + ++ A ++DG + ++ + K T +
Sbjct: 424 SQD---GKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEKGQRQERTGKN 478
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
S + + K L + N+ + + E ++E+F++ T + +P + GK + + FI +A
Sbjct: 479 STWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASFED 535
Query: 335 ALKAVKDTEKYEIDGKS 351
A +A+ K EI+G++
Sbjct: 536 AKEALNSCNKMEIEGRT 552
Score = 168 (64.2 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 56/223 (25%), Positives = 108/223 (48%)
Query: 60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQLLALPPNGSEVFIGGLPKD 117
SE D AE N + ++ GE +++ + + + L
Sbjct: 439 SEAD--AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYS 496
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
A+EE L+++ E F +++ ++++ G+SKG+AF+ F S E AK+A++ + E++G+T
Sbjct: 497 ATEETLQEVFEKA--TF-IKVPQNQQ-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRT 552
Query: 178 IRCSL----------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
IR L S+ LF+ + ++ TE+ ++ E G ++ D + S
Sbjct: 553 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS 608
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 609 -SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 648
Score = 159 (61.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 74/296 (25%), Positives = 132/296 (44%)
Query: 65 SAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLP---KDASEE 121
+A A+ ++D+ EEEE+ ED+ ++ + P G + +P K+ +EE
Sbjct: 184 AAPASEDEDEEEDEEEEEEDEEE--EDDSEEEEAMEITPAKGKKAPAKVVPVKAKNVAEE 241
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFA-----FVSFRSKEFAK-KAIDELHSKELKG 175
D D E + + +D+E E + R KE K K + E ++++G
Sbjct: 242 DDDDEEEDEDEEEDEEEEEDEEEEEEEEEEEPVKPAPGKRKKEMTKQKEVPEAKKQKVEG 301
Query: 176 KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFV 235
S S T LFIGN+ N + E + I + P + + D + + NR F +V
Sbjct: 302 -----SESTTPFNLFIGNLNPNKSVAELKVAISE--PFAKNDLAVVDVRTGT-NRKFGYV 353
Query: 236 LYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
+ + D + L K+ GN I PK A+ + L KN+ N +
Sbjct: 354 DF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGRDSKKVRAA--RTLLAKNLSFNIT 406
Query: 296 TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+++KE+F+ E+ ++V GKS + +I + + A K +++ + EIDG+S
Sbjct: 407 EDELKEVFEDALEI-RLVSQDGKS--KGIAYIEFKSEADAEKNLEEKQGAEIDGRS 459
Score = 48 (22.0 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHA 97
+K A E D E + ++++ EE+E+ E+E K A
Sbjct: 235 AKNVAEEDDDDEEEDEDEEEDEEEEEDEEEEEEEEEEEPVKPA 277
Score = 42 (19.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 54 HSKAGASEKDQSAEANRNDDDTPHVEEEE 82
++K S++D+ + + +D D +EEE
Sbjct: 138 NAKKEDSDEDEDDDDDEDDSDEDEEDEEE 166
Score = 37 (18.1 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 76 PHVEEEEKPTASVGEDEKDKHAQLLALP 103
P EE+ + E+E D + + +P
Sbjct: 21 PKEVEEDSEDEEMSEEEDDSSGEEVVIP 48
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 191 (72.3 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 56/190 (29%), Positives = 103/190 (54%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV+F +++ A +A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LFIG + K TE++ R + G +E
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 162
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
+++ P SR G +FV + A A + + M A ++G ++P + +AD +
Sbjct: 163 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 219
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 220 EQKRMAQQLQ 229
Score = 146 (56.5 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 42/156 (26%), Positives = 75/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G VP+ W+E + R++ E G V I +++D QNP +++G FV +Y A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 101
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L++ I + I+ +F
Sbjct: 102 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 157
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ + R+ A A+K
Sbjct: 158 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 193
Score = 127 (49.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 425 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 484
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 485 AIQSMNGFQIGMKRLKVQLKRSKN 508
Score = 63 (27.2 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + ++F G V KV + + + FGF+ Y SA A++
Sbjct: 430 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 489
Query: 343 EKYEIDGK 350
++I K
Sbjct: 490 NGFQIGMK 497
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 191 (72.3 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 56/190 (29%), Positives = 103/190 (54%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV+F +++ A +A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LFIG + K TE++ R + G +E
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 162
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
+++ P SR G +FV + A A + + M A ++G ++P + +AD +
Sbjct: 163 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 219
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 220 EQKRMAQQLQ 229
Score = 146 (56.5 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 42/156 (26%), Positives = 75/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G VP+ W+E + R++ E G V I +++D QNP +++G FV +Y A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 101
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L++ I + I+ +F
Sbjct: 102 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 157
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ + R+ A A+K
Sbjct: 158 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 193
Score = 127 (49.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 426 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 485
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 486 AIQSMNGFQIGMKRLKVQLKRSKN 509
Score = 63 (27.2 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + ++F G V KV + + + FGF+ Y SA A++
Sbjct: 431 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 490
Query: 343 EKYEIDGK 350
++I K
Sbjct: 491 NGFQIGMK 498
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 209 (78.6 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 64/251 (25%), Positives = 131/251 (52%)
Query: 114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173
LP ++++L+++ E D E+RL+ + G+SKG A++ F+++ A+K +E E+
Sbjct: 402 LPYKVTQDELKEVFE---DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 456
Query: 174 KGKTIRCSLSETK--NRLFIGNVPKNWTEDEFRKVIEDVGPGV--ETIE-------LIKD 222
G++I + K N+ + G W+ + V+ ++ ET++ IK
Sbjct: 457 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 516
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDHSAAAS 280
PQN + +++G++F+ + A + +++ + + N + ++G + P+ +P+ A +
Sbjct: 517 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN--ARSQ 571
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
K L+VK + ++T+ E +KE F G V ++ ++G + FGF+ + A KA
Sbjct: 572 PSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAA 628
Query: 340 KDT-EKYEIDG 349
K+ E EIDG
Sbjct: 629 KEAMEDGEIDG 639
Score = 185 (70.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 77/321 (23%), Positives = 146/321 (45%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPP------NGSE------ 108
+ D + DD+ EEEE+P K + A+ A P G+E
Sbjct: 251 DDDDDEDDEDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFN 310
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAID 166
+F+G L + S +L+ I DVF + D G ++ F +V F S E +KA+
Sbjct: 311 LFVGNLNFNKSAPELKT---GISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKAL- 366
Query: 167 ELHSKELKGKTIRCSLSETKNR--------LFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
EL ++ G I+ + K+ L N+P T+DE ++V ED I
Sbjct: 367 ELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAE----IR 422
Query: 219 LI-KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-TPDH- 275
L+ KD +++G +++ + A A+ + ++ ++DG + ++ + K D+
Sbjct: 423 LVSKD----GKSKGIAYIEFKTEADAEKTFEEKQGT--EIDGRSISLYYTGEKGQNQDYR 476
Query: 276 ----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
S + + K L + N+ + + E ++E+F++ T + +P ++GK + + FI +A
Sbjct: 477 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFA 533
Query: 331 ERSSALKAVKDTEKYEIDGKS 351
A +A+ K EI+G++
Sbjct: 534 SFEDAKEALNSCNKREIEGRA 554
Score = 163 (62.4 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 45/166 (27%), Positives = 89/166 (53%)
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
+ L A+EE L+++ E F +++ ++ ++G+SKG+AF+ F S E AK+A++ +
Sbjct: 492 LSNLSYSATEETLQEVFEKA--TF-IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 547
Query: 171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+E++G+ IR L + + P K +ED + +++ G ++ D +
Sbjct: 548 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRE 607
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
S ++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 608 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 650
Score = 134 (52.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 71/297 (23%), Positives = 123/297 (41%)
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPP-NGSEVFIGGLP 115
A E D+ E + ++DD + EE+ + K K A+++ + N +E
Sbjct: 183 ASEDEDDEDDEDDEDEDDDEEDDSEEEAMETTPAKGK-KAAKVVPVKAKNVAEDEDEEED 241
Query: 116 KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK-KAIDELHSKELK 174
+ ++D D + D E +++E E R KE AK KA E ++++
Sbjct: 242 DEDEDDDDDDDDDDEDDEDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVE 301
Query: 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
G T LF+GN+ N + E + I DV +L R F +
Sbjct: 302 GTE-----PTTAFNLFVGNLNFNKSAPELKTGISDV---FAKNDLAVVDVRIGMTRKFGY 353
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
V + + D + L K+ GN I PK S + L KN+P
Sbjct: 354 VDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKERDARTLLAKNLPYKV 406
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ +++KE+F+ E+ ++V GKS + +I + + A K ++ + EIDG+S
Sbjct: 407 TQDELKEVFEDAAEI-RLVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDGRS 460
Score = 127 (49.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ GL +D +EE L++ + G V R++ D+E+G SKGF FV F S+E AK A + +
Sbjct: 576 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632
Query: 169 HSKELKGKTIRCSLSETK 186
E+ G + ++ K
Sbjct: 633 EDGEIDGNKVTLDWAKPK 650
Score = 44 (20.5 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
+K A ++D+ + DDD +++E E+E+++ +
Sbjct: 229 AKNVAEDEDEEEDDEDEDDDDDDDDDDEDDEDEDDEEEEEEEEE 272
Score = 38 (18.4 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
+KAG ++ D A P EE+ + EDE+D
Sbjct: 5 AKAGKNQGDPKKMA-----PPPKEVEEDSEDEEMSEDEED 39
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 187 (70.9 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 57/207 (27%), Positives = 112/207 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 73 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 132
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 133 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 188
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTST 296
+ + Q+ A ++ + NT+T
Sbjct: 189 QKDKEQRRLQQQL-AQQMQQL--NTAT 212
Score = 146 (56.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 75 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ ++ R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 166
Score = 125 (49.1 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 396 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 455
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 456 AIQAMNGFQIGMKRLKVQLKRSKN 479
Score = 66 (28.3 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 387 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 446
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 447 YDNPVSAQAAIQAMNGFQIGMK 468
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 183 (69.5 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 51/171 (29%), Positives = 90/171 (52%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +PK SE L L + V EV ++KDK + S+G F+ S+E A K ++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 168 LHSKE-LKG-------KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
H+K+ L G K L +++LF+G +PKN +E E + + G ++ +++
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGT-IKDLQI 137
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWAD 268
++ Q S+ G +F+ Y A S + +N K++G+T P + WAD
Sbjct: 138 LRGAQQTSK--GCAFLKYETKEQA-VSAMESINGKHKMEGSTVPLVVKWAD 185
Score = 136 (52.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI +P++ +++L + G V ++ DK +G SK F FVS+ S+ A+
Sbjct: 346 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQN 405
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AID ++ + L GK ++ L N
Sbjct: 406 AIDMMNGRHLGGKKLKVQLKRDSN 429
Score = 69 (29.3 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ NIP +++ FQ G V KV + + FGF+ Y +++A A+
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 343 EKYEIDGK 350
+ GK
Sbjct: 411 NGRHLGGK 418
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 187 (70.9 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 57/207 (27%), Positives = 112/207 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 73 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 132
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 133 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 188
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTST 296
+ + Q+ A ++ + NT+T
Sbjct: 189 QKDKEQRRLQQQL-AQQMQQL--NTAT 212
Score = 146 (56.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 75 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ ++ R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 166
Score = 125 (49.1 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 400 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 459
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 460 AIQAMNGFQIGMKRLKVQLKRSKN 483
Score = 66 (28.3 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 391 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 450
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 451 YDNPVSAQAAIQAMNGFQIGMK 472
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 187 (70.9 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 57/207 (27%), Positives = 112/207 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 73 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 132
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 133 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 188
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTST 296
+ + Q+ A ++ + NT+T
Sbjct: 189 QKDKEQRRLQQQL-AQQMQQL--NTAT 212
Score = 146 (56.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 75 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ ++ R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 166
Score = 125 (49.1 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 400 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 459
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 460 AIQAMNGFQIGMKRLKVQLKRSKN 483
Score = 66 (28.3 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 391 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 450
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 451 YDNPVSAQAAIQAMNGFQIGMK 472
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 214 (80.4 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 70/260 (26%), Positives = 125/260 (48%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + +++G L +E L +L IG V +R+ +D + S G+A+V++ + +
Sbjct: 57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGE 116
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFI---GNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ L GNV KN K + D I
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + PK D +
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAASQAI-KHVNGML-LNEKKVYVGHHIPKK--DRQS 232
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAE 331
++KA +YVKNI + ++ + LF+++G+VT + + +GK R FGF+++
Sbjct: 233 KFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTS 292
Query: 332 RSSALKAVKDTEKYEIDGKS 351
A KAV++ + E G++
Sbjct: 293 HEDASKAVQELNEKEFHGQN 312
Score = 161 (61.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 30/96 (31%), Positives = 58/96 (60%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + ++++ R L E GDV L +D+E+G+S+GF
Sbjct: 227 KKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFG 286
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
FV+F S E A KA+ EL+ KE G+ + ++ K+
Sbjct: 287 FVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKH 322
Score = 137 (53.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 53/180 (29%), Positives = 80/180 (44%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+++ N+ T+DEFR + E G V + L +D Q ++RGF FV + ++ A + Q
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGD-VTSSSLARD-QETGKSRGFGFVNFTSHEDASKAVQ 301
Query: 249 KMLNANFKLDGNTPTISWADPKSTPDHSA-----AASQVKA-------LYVKNIPDNTST 296
++ F G + A K + AA Q KA LY+KN+ D
Sbjct: 302 ELNEKEFH--GQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 297 EKIKELFQRHGEVT--KV----VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
EK+++LF G +T KV + PG+ G+ G E S K K EK D K
Sbjct: 360 EKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEG-----EESEKNKENKPEEKEGDDSK 414
Score = 60 (26.2 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
+N P+ + K ++ GE +K GKS + FGF+ +A A KAV + + +
Sbjct: 402 ENKPEEKEGDDSKPE-EKEGEDSKSKSKLGKS--KGFGFVCFANPDDATKAVAEMNQRMV 458
Query: 348 DGK 350
+ K
Sbjct: 459 NNK 461
Score = 41 (19.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255
KN K +D P + E K +++GF FV + N D + + + N
Sbjct: 399 KNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFAN---PDDATKAVAEMNQ 455
Query: 256 KLDGNTP 262
++ N P
Sbjct: 456 RMVNNKP 462
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 187 (70.9 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 57/207 (27%), Positives = 112/207 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 19 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 78
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 79 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 138
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 139 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 194
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTST 296
+ + Q+ A ++ + NT+T
Sbjct: 195 QKDKEQRRLQQQL-AQQMQQL--NTAT 218
Score = 146 (56.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 23 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 80
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 81 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 136
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ ++ R+ A A+K
Sbjct: 137 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 172
Score = 125 (49.1 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 406 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 465
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 466 AIQAMNGFQIGMKRLKVQLKRSKN 489
Score = 66 (28.3 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 397 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 456
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 457 YDNPVSAQAAIQAMNGFQIGMK 478
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 187 (70.9 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 57/207 (27%), Positives = 112/207 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 73 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 132
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 133 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 188
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTST 296
+ + Q+ A ++ + NT+T
Sbjct: 189 QKDKEQRRLQQQL-AQQMQQL--NTAT 212
Score = 146 (56.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 75 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ ++ R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 166
Score = 125 (49.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 410 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 469
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 470 AIQAMNGFQIGMKRLKVQLKRSKN 493
Score = 66 (28.3 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 401 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 460
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 461 YDNPVSAQAAIQAMNGFQIGMK 482
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 189 (71.6 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 50/174 (28%), Positives = 100/174 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A K
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 164 AIDELHS-KELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
A LH K L G + I+ +++++R LF+G + K T+++ RK+ E G ++
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDE 122
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
+++ P S+ G +FV + +A A + L+++ L G + + + +AD
Sbjct: 123 CTVLRGPDGTSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 173
Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
Identities = 25/104 (24%), Positives = 52/104 (50%)
Query: 84 PTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE 143
P + ++ + Q P+G +FI LP++ ++ ++ + P G V ++ D+
Sbjct: 357 PQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 416
Query: 144 SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
+ +SK F FVSF + A+ AI ++ ++ K ++ L K+
Sbjct: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 460
Score = 62 (26.9 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + +I ++F G V KV + + + FGF+ + +SA A++
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 343 EKYEIDGK 350
++I K
Sbjct: 442 NGFQIGMK 449
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 187 (70.9 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 57/207 (27%), Positives = 112/207 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 37 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 96
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 97 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 156
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 157 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 212
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTST 296
+ + Q+ A ++ + NT+T
Sbjct: 213 QKDKEQRRLQQQL-AQQMQQL--NTAT 236
Score = 146 (56.5 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 98
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 99 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 154
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ ++ R+ A A+K
Sbjct: 155 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 190
Score = 125 (49.1 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 420 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 479
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 480 AIQAMNGFQIGMKRLKVQLKRSKN 503
Score = 66 (28.3 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 411 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 470
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 471 YDNPVSAQAAIQAMNGFQIGMK 492
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 187 (70.9 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 57/207 (27%), Positives = 112/207 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 37 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 96
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 97 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 156
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 157 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 212
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTST 296
+ + Q+ A ++ + NT+T
Sbjct: 213 QKDKEQRRLQQQL-AQQMQQL--NTAT 236
Score = 146 (56.5 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 98
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 99 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 154
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ ++ R+ A A+K
Sbjct: 155 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 190
Score = 125 (49.1 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 420 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 479
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 480 AIQAMNGFQIGMKRLKVQLKRSKN 503
Score = 66 (28.3 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 411 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 470
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 471 YDNPVSAQAAIQAMNGFQIGMK 492
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 187 (70.9 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 57/207 (27%), Positives = 112/207 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 37 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 96
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 97 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 156
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 157 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 212
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTST 296
+ + Q+ A ++ + NT+T
Sbjct: 213 QKDKEQRRLQQQL-AQQMQQL--NTAT 236
Score = 146 (56.5 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 98
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 99 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 154
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ ++ R+ A A+K
Sbjct: 155 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 190
Score = 125 (49.1 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 420 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 479
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 480 AIQAMNGFQIGMKRLKVQLKRSKN 503
Score = 66 (28.3 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 411 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 470
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 471 YDNPVSAQAAIQAMNGFQIGMK 492
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 196 (74.1 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 52/176 (29%), Positives = 96/176 (54%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+ +E D R L E G VF +++DK + SKG FV+F ++ A +A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 168 LHS-KELKGK--TIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
LH+ K ++G ++ ++T+NR LFIG + K E+ R++ G +E ++
Sbjct: 116 LHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGH-IEDCSVL 174
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTPD 274
+D SR G +FV + N +CA + ++M ++ ++G + P + +AD + D
Sbjct: 175 RDQDGKSR--GCAFVTFTNRSCAVVATKEMHHSQ-TMEGCSAPLVVKFADTQKDKD 227
Score = 127 (49.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 36/156 (23%), Positives = 76/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
++F+G +P+ W E + R++ E G V + +++D ++ ++G FV +Y+ A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYG-SVFSCNILRD-KSTQASKGCCFVTFYHRKDA-IEA 112
Query: 248 QKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
Q L+ N K ++G + P T + + + L++ + + E ++E+F +
Sbjct: 113 QGALH-NIKVIEGMHHPVQMK-PADTENRNE-----RKLFIGQLSKKHNEENLREIFAKF 165
Query: 307 GEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
G + + + GK R F+ + RS A+ A K+
Sbjct: 166 GHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKE 201
Score = 118 (46.6 bits), Expect = 0.00047, P = 0.00047
Identities = 29/102 (28%), Positives = 50/102 (49%)
Query: 85 TASVGEDEKDKHAQLLA----LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMK 140
T VG AQ++ P+G+ +FI LP+D + DL + P G + ++
Sbjct: 477 TGGVGVQATTSAAQMVGNGDVKGPDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFI 536
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182
DK + SK F FVS+ + + A AI ++ ++ K ++ L
Sbjct: 537 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 578
Score = 114 (45.2 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 25/72 (34%), Positives = 47/72 (65%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N ++FIG L K +EE+LR++ G + + +++D++ G+S+G AFV+F ++ A A
Sbjct: 140 NERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVA 198
Query: 165 IDELH-SKELKG 175
E+H S+ ++G
Sbjct: 199 TKEMHHSQTMEG 210
Score = 57 (25.1 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + F G + KV + + + FGF+ Y SA A+
Sbjct: 505 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 564
Query: 343 EKYEIDGK 350
++I K
Sbjct: 565 NGFQIGSK 572
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 187 (70.9 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 50/175 (28%), Positives = 100/175 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A K
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A LH K L G + I+ +++++R LF+G + K T+++ RK+ E G ++
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
+++ P S+ G +FV + +A A + L+++ L G + + + +AD
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 174
Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
Identities = 25/109 (22%), Positives = 54/109 (49%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
++ P + ++ + Q P+G +FI LP++ ++ ++ + P G V ++
Sbjct: 302 QQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKV 361
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
D+ + +SK F FVSF + A+ AI ++ ++ K ++ L K+
Sbjct: 362 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 410
Score = 62 (26.9 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + +I ++F G V KV + + + FGF+ + +SA A++
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 391
Query: 343 EKYEIDGK 350
++I K
Sbjct: 392 NGFQIGMK 399
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 186 (70.5 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 57/207 (27%), Positives = 111/207 (53%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ + F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 13 PDAIKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 73 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 132
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 133 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 188
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTST 296
+ + Q+ A ++ + NT+T
Sbjct: 189 QKDKEQRRLQQQL-AQQMQQL--NTAT 212
Score = 143 (55.4 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 40/156 (25%), Positives = 75/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
+ F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KTFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 75 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ ++ R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 166
Score = 125 (49.1 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 396 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 455
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 456 AIQAMNGFQIGMKRLKVQLKRSKN 479
Score = 66 (28.3 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 387 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 446
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 447 YDNPVSAQAAIQAMNGFQIGMK 468
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 187 (70.9 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 57/207 (27%), Positives = 112/207 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 44 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 103
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 104 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 163
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 164 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 219
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTST 296
+ + Q+ A ++ + NT+T
Sbjct: 220 QKDKEQRRLQQQL-AQQMQQL--NTAT 243
Score = 146 (56.5 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 40/156 (25%), Positives = 76/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 105
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 106 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 161
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ ++ R+ A A+K
Sbjct: 162 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 197
Score = 125 (49.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 433 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 492
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 493 AIQAMNGFQIGMKRLKVQLKRSKN 516
Score = 66 (28.3 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 424 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 483
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 484 YDNPVSAQAAIQAMNGFQIGMK 505
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 212 (79.7 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 61/250 (24%), Positives = 116/250 (46%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L P G + +R+ +D + S G+A+++F+ A+ A+D
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GN+ KN E K + D I K
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G+ FV + A+ + + M N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAANRAIETM-NGMLLNDRKVFVGHFKSRKEREAEMGAKAVE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+KN ++ +EK+K +F G+ V VM + R FGF+++ A +AV
Sbjct: 190 FTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVT 249
Query: 341 DTEKYEIDGK 350
+ E++G+
Sbjct: 250 EMNGKELNGR 259
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A++ A + V+I +D E L+++ G V +M D E G S+G
Sbjct: 174 KSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F + A++A+ E++ KEL G+ +
Sbjct: 233 FGFVNFVNHGDARRAVTEMNGKELNGRVL 261
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 212 (79.7 bits), Expect = 8.1e-15, P = 8.1e-15
Identities = 63/250 (25%), Positives = 117/250 (46%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RGF FV + + A + M N D + + + A A +
Sbjct: 131 VCDDHGSRGFGFVHFETHEAAQQAITTM-NGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
+YVKN+ + + +++LF R G++ V + SG R FGF+++ + A KAV
Sbjct: 190 FTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVM 249
Query: 341 DTEKYEIDGK 350
D E+ G+
Sbjct: 250 DMNGKEVSGR 259
Score = 141 (54.7 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 27/89 (30%), Positives = 54/89 (60%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ +L A + +++ L D E+ L+DL G + V++M+D +SG S+G
Sbjct: 174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F+ E A+KA+ +++ KE+ G+ +
Sbjct: 233 FGFVNFQKHEEAQKAVMDMNGKEVSGRLL 261
Score = 95 (38.5 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYVKN+ D+ EK+++ F +G +T VM G K FGF+ ++ A KAV +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTE 352
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 188 (71.2 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 55/190 (28%), Positives = 102/190 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV+F +++ A +A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LFIG + K TE++ R + G +E
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
+++ P SR G +FV + A + + M A ++G ++P + +AD +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 193 EQKRMAQQLQ 202
Score = 147 (56.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 42/156 (26%), Positives = 75/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G VP+ W+E + R++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L++ I + I+ +F
Sbjct: 75 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ + R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIK 166
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 457
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 458 AIQSMNGFQIGMKRLKVQLKRSKN 481
Score = 63 (27.2 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + ++F G V KV + + + FGF+ Y SA A++
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 343 EKYEIDGK 350
++I K
Sbjct: 463 NGFQIGMK 470
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 188 (71.2 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 55/190 (28%), Positives = 102/190 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV+F +++ A +A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LFIG + K TE++ R + G +E
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
+++ P SR G +FV + A + + M A ++G ++P + +AD +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 193 EQKRMAQQLQ 202
Score = 147 (56.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 42/156 (26%), Positives = 75/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G VP+ W+E + R++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L++ I + I+ +F
Sbjct: 75 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ + R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIK 166
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 399 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 458
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 459 AIQSMNGFQIGMKRLKVQLKRSKN 482
Score = 63 (27.2 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + ++F G V KV + + + FGF+ Y SA A++
Sbjct: 404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463
Query: 343 EKYEIDGK 350
++I K
Sbjct: 464 NGFQIGMK 471
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 188 (71.2 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 55/190 (28%), Positives = 102/190 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV+F +++ A +A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LFIG + K TE++ R + G +E
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
+++ P SR G +FV + A + + M A ++G ++P + +AD +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 193 EQKRMAQQLQ 202
Score = 147 (56.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 42/156 (26%), Positives = 75/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G VP+ W+E + R++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L++ I + I+ +F
Sbjct: 75 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ + R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIK 166
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 399 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 458
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 459 AIQSMNGFQIGMKRLKVQLKRSKN 482
Score = 63 (27.2 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + ++F G V KV + + + FGF+ Y SA A++
Sbjct: 404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463
Query: 343 EKYEIDGK 350
++I K
Sbjct: 464 NGFQIGMK 471
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 211 (79.3 bits), Expect = 9.8e-15, P = 9.8e-15
Identities = 63/250 (25%), Positives = 117/250 (46%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RGF FV + + A + M N D + + + A A +
Sbjct: 131 ACDEHGSRGFGFVHFETHEAAQQAINTM-NGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
+YVKN+P + + +++LF + G++ V + SG R FGF+++ + A KAV
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 341 DTEKYEIDGK 350
E+ G+
Sbjct: 250 HMNGKEVSGR 259
Score = 140 (54.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 28/89 (31%), Positives = 52/89 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 92 (37.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYVKN+ D+ +K+++ F +G +T VM G K FGF+ ++ A KAV +
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTE 352
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 187 (70.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 50/175 (28%), Positives = 100/175 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A K
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A LH K L G + I+ +++++R LF+G + K T+++ RK+ E G ++
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
+++ P S+ G +FV + +A A + L+++ L G + + + +AD
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 174
Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
Identities = 25/106 (23%), Positives = 54/106 (50%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
++P + ++ + Q P+G +FI LP++ ++ ++ + P G V ++ D
Sbjct: 351 QQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVD 410
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
+ + +SK F FVSF + A+ AI ++ ++ K ++ L K+
Sbjct: 411 RATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 456
Score = 62 (26.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + +I ++F G V KV + + + FGF+ + +SA A++
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437
Query: 343 EKYEIDGK 350
++I K
Sbjct: 438 NGFQIGMK 445
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 187 (70.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 50/175 (28%), Positives = 100/175 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A K
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A LH K L G + I+ +++++R LF+G + K T+++ RK+ E G ++
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
+++ P S+ G +FV + +A A + L+++ L G + + + +AD
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 174
Score = 118 (46.6 bits), Expect = 0.00033, P = 0.00033
Identities = 25/109 (22%), Positives = 54/109 (49%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
++ P + ++ + Q P+G +FI LP++ ++ ++ + P G V ++
Sbjct: 352 QQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKV 411
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
D+ + +SK F FVSF + A+ AI ++ ++ K ++ L K+
Sbjct: 412 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 460
Score = 62 (26.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + +I ++F G V KV + + + FGF+ + +SA A++
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 343 EKYEIDGK 350
++I K
Sbjct: 442 NGFQIGMK 449
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 186 (70.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 53/193 (27%), Positives = 104/193 (53%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
P+ ++F+G +P+ SE++L++L EP G V+++ +++D+ +SKG FV+F +++ A
Sbjct: 112 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAA 171
Query: 162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
+A + LH+ K L G ++ + SE N +LFIG V K E++ R + G
Sbjct: 172 LEAQNALHNIKTLTGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPYG 231
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
+E +++ P SR G +FV + A A + K ++ + ++G ++P + +AD
Sbjct: 232 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPMVVKFADT 287
Query: 270 KSTPDHSAAASQV 282
+ + Q+
Sbjct: 288 QKDKEQRRLQQQL 300
Score = 150 (57.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 40/156 (25%), Positives = 77/156 (49%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P++W+E E +++ E G V I +++D QNP +++G FV +Y A
Sbjct: 116 KMFVGQIPRSWSEKELKELFEPYG-AVYQINILRDRSQNPPQSKGCCFVTFYTRKAA-LE 173
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I K + A + + L++ + + I+ +F
Sbjct: 174 AQNALH-NIKTLTGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 229
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
+G++ + + G G R F+ ++ R+ A A+K
Sbjct: 230 YGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 265
Score = 124 (48.7 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++D+ + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 497 PEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 556
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 557 AIQAMNGFQIGMKRLKVQLKRSKN 580
Score = 66 (28.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + I ++F G V KV + + + FGF+
Sbjct: 488 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 547
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y SA A++ ++I K
Sbjct: 548 YDNPVSAQAAIQAMNGFQIGMK 569
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 187 (70.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 50/175 (28%), Positives = 100/175 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A K
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A LH K L G + I+ +++++R LF+G + K T+++ RK+ E G ++
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
+++ P S+ G +FV + +A A + L+++ L G + + + +AD
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 174
Score = 118 (46.6 bits), Expect = 0.00037, P = 0.00037
Identities = 25/104 (24%), Positives = 52/104 (50%)
Query: 84 PTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE 143
P + ++ + Q P+G +FI LP++ ++ ++ + P G V ++ D+
Sbjct: 386 PQQQQQQQQQQQQQQQQQQRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 445
Query: 144 SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
+ +SK F FVSF + A+ AI ++ ++ K ++ L K+
Sbjct: 446 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 489
Score = 62 (26.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + +I ++F G V KV + + + FGF+ + +SA A++
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 470
Query: 343 EKYEIDGK 350
++I K
Sbjct: 471 NGFQIGMK 478
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 204 (76.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 62/189 (32%), Positives = 93/189 (49%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S AG +E SAEA D EE+E + S +H + A ++FIGGL
Sbjct: 51 SAAGGTEGG-SAEAEGAKIDASKNEEDEGHSNS-----SPRHTEAAAAQREEWKMFIGGL 104
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
D +++DL+D G+V + L D +G S+GF FV F+ E K +D+ K L
Sbjct: 105 SWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LN 163
Query: 175 GKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
GK I R +TK ++F+G + + E++ R+ G VE+IEL D + R
Sbjct: 164 GKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR 222
Query: 229 NRGFSFVLY 237
RGF F+ +
Sbjct: 223 -RGFCFITF 230
Score = 148 (57.2 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 60/216 (27%), Positives = 91/216 (42%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFR 204
G G A + +K DE HS T + + ++FIG + + T+ + +
Sbjct: 55 GTEGGSAEAEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLK 114
Query: 205 KVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263
G V+ T++L DP R+RGF FVL+ + D + M KL+G
Sbjct: 115 DYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-- 166
Query: 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR 322
DPK VK ++V + +T EKI+E F GEV + +P K+ KR
Sbjct: 167 ---IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKR 222
Query: 323 -DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
F FI + E K ++ +KY G S V
Sbjct: 223 RGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKV 256
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 209 (78.6 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 65/250 (26%), Positives = 122/250 (48%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L + ++ L D + V VR+ +D + S G+ +V++ + + A+KA+ +L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 169 HSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIK-DP 223
+ L GK IR + S + R +GN+ KN + K + + G TI K
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVAT 167
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+ ++RG+ FV + A + +K+ N K+ N I + +AA ++K
Sbjct: 168 DHMGQSRGYGFVQFDTEDSAKNAIEKL---NGKVL-NDKQIFVGPFLRKEERESAADKMK 223
Query: 284 A--LYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+YVKN+ + T+ +++K F ++G ++ VVM G R FGF+++ A +AV+
Sbjct: 224 FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVE 283
Query: 341 DTEKYEIDGK 350
+ D K
Sbjct: 284 ALNGKKFDDK 293
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 184 (69.8 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 43/142 (30%), Positives = 85/142 (59%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++FIG +P++ E+DL+ + E G ++E+ ++KDK +G KG AF+++ ++E A K
Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALK 63
Query: 164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A LH K L G + I+ +++++R LF+G + K T+++ R++ E G ++
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFG-NID 122
Query: 216 TIELIKDPQNPSRNRGFSFVLY 237
+++ P S+ G +FV +
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKF 142
Score = 116 (45.9 bits), Expect = 0.00055, P = 0.00055
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ ++ + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 374 PEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQA 433
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 434 AIQSMNGFQIGMKRLKVQLKRPKD 457
Score = 112 (44.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K ++ED+R + E G++ E +++ + G SKG AFV F++ A+ AI+
Sbjct: 96 KLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINA 154
Query: 168 LH-SKELKG 175
LH S+ L G
Sbjct: 155 LHGSRTLPG 163
Score = 63 (27.2 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + +I ++F G V KV + + + FGF+ + SA A++
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 438
Query: 343 EKYEIDGK 350
++I K
Sbjct: 439 NGFQIGMK 446
Score = 49 (22.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+FI ++P+ +T+ E ++ G V + ++ D + ++++ F FV + N A + Q
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPGSAQAAIQ 436
Query: 249 KM 250
M
Sbjct: 437 SM 438
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 208 (78.3 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 63/250 (25%), Positives = 117/250 (46%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RGF FV + + A + + M N D + + + A A +
Sbjct: 131 VCDDHGSRGFGFVHFETHEAAQNAIRTM-NGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
+YVKN+ + +++LF + G++ V + SG R FGF+++ + A KAV
Sbjct: 190 FTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVT 249
Query: 341 DTEKYEIDGK 350
D E+ G+
Sbjct: 250 DMNGKEVSGR 259
Score = 144 (55.7 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 28/89 (31%), Positives = 53/89 (59%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ L D E L+DL G + V++M+D +SG S+G
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ +++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEDAQKAVTDMNGKEVSGRLL 261
Score = 94 (38.1 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYVKN+ D+ EK+++ F +G +T VM G K FGF+ ++ A KAV +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTE 352
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 184 (69.8 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 43/142 (30%), Positives = 85/142 (59%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++FIG +P++ E+DL+ + E G ++E+ ++KDK +G KG AF+++ ++E A K
Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALK 63
Query: 164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A LH K L G + I+ +++++R LF+G + K T+++ R++ E G ++
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFG-NID 122
Query: 216 TIELIKDPQNPSRNRGFSFVLY 237
+++ P S+ G +FV +
Sbjct: 123 ECTVLRGPDGTSK--GCAFVKF 142
Score = 120 (47.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K ++ED+R + EP G++ E +++ + G SKG AFV F++ A+ AI+
Sbjct: 96 KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINA 154
Query: 168 LH-SKELKG 175
LH S+ L G
Sbjct: 155 LHGSRTLPG 163
Score = 115 (45.5 bits), Expect = 0.00071, P = 0.00071
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ ++ + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 374 PEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQA 433
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 434 AIQAMNGFQIGMKRLKVQLKRPKD 457
Score = 61 (26.5 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + +I ++F G V KV + + + FGF+ + SA A++
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 343 EKYEIDGK 350
++I K
Sbjct: 439 NGFQIGMK 446
Score = 48 (22.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+FI ++P+ +T+ E ++ G V + ++ D + ++++ F FV + N A + Q
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPGSAQAAIQ 436
Query: 249 KM 250
M
Sbjct: 437 AM 438
>UNIPROTKB|Q8IYX4 [details] [associations]
symbol:DND1 "Dead end protein homolog 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0017091 "AU-rich element binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0060965 "negative regulation of gene silencing by
miRNA" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0060965 eggNOG:NOG317467
HOGENOM:HOG000112240 HOVERGEN:HBG051370 OrthoDB:EOG4TB4BN
EMBL:AY321065 EMBL:BC033496 IPI:IPI00217910 RefSeq:NP_919225.1
UniGene:Hs.591262 ProteinModelPortal:Q8IYX4 SMR:Q8IYX4
STRING:Q8IYX4 PhosphoSite:Q8IYX4 DMDM:60389799 PaxDb:Q8IYX4
PRIDE:Q8IYX4 DNASU:373863 Ensembl:ENST00000542735 GeneID:373863
KEGG:hsa:373863 UCSC:uc003lgt.3 CTD:373863 GeneCards:GC05M140030
HGNC:HGNC:23799 MIM:609385 neXtProt:NX_Q8IYX4 PharmGKB:PA134931157
InParanoid:Q8IYX4 OMA:KRECELW PhylomeDB:Q8IYX4 ChiTaRS:DND1
GenomeRNAi:373863 NextBio:100136 Bgee:Q8IYX4 CleanEx:HS_DND1
Genevestigator:Q8IYX4 GermOnline:ENSG00000183403 Uniprot:Q8IYX4
Length = 353
Score = 201 (75.8 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 50/169 (29%), Positives = 86/169 (50%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTF-SGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 206 (77.6 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 61/250 (24%), Positives = 118/250 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RGF FV + + A + M N D + + + A A +
Sbjct: 131 VCDEHGSRGFGFVHFETHEAAQNAISTM-NGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
+YVKN+ + +++++LF + G++ V + SG R FGF+++ + A KAV
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 341 DTEKYEIDGK 350
+ E+ G+
Sbjct: 250 NMNGREVSGR 259
Score = 135 (52.6 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 26/89 (29%), Positives = 52/89 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ +L A + +++ L D E+ L+DL G + V++M+D +SG S+G
Sbjct: 174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ +E+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVNMNGREVSGRLL 261
Score = 95 (38.5 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYVKN+ D+ EK+++ F +G +T VM G K FGF+ ++ A KAV +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTE 352
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 198 (74.8 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 52/199 (26%), Positives = 97/199 (48%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLA--LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV 136
EE + GE+ + Q+ A + ++F+GGL D S++DL+D G+V +
Sbjct: 15 EENLNGGEAAGENGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDC 74
Query: 137 RLMKDKESGESKGFAFVSFRSKEFAKKAIDE----LHSKELKGKTIRCSLSETKNRLFIG 192
+ D +G S+GF F+ F+ + + + + L +++ K E ++F+G
Sbjct: 75 TIKMDSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVG 134
Query: 193 NVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252
+ TE++ R+ G +ETIEL DP+ S+ RGF F+ + +++ +K+L
Sbjct: 135 GLNPETTEEKIREYFGSFGE-IETIELPTDPKT-SKRRGFVFITFKE----EFAVKKILE 188
Query: 253 ANF-KLDGNTPTISWADPK 270
+ + G+ I A PK
Sbjct: 189 KKYHNVCGSKCEIKIAQPK 207
Score = 136 (52.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 43/168 (25%), Positives = 77/168 (45%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E ++F+G + + ++ + + G ++ IK N R+RGF F+L+ +
Sbjct: 42 EDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCT--IKMDSNTGRSRGFGFILFKESDSV 99
Query: 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
D Q+ +LDG DPK + VK ++V + T+ EKI+E F
Sbjct: 100 DRVLQQK---EHRLDGRQ-----IDPKRAM--AIKKEPVKKIFVGGLNPETTEEKIREYF 149
Query: 304 QRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
GE+ + +P P S +R F FI + E A+K + + + + + G
Sbjct: 150 GSFGEIETIELPTDPKTSKRRGFVFITFKEEF-AVKKILEKKYHNVCG 196
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 184 (69.8 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 47/136 (34%), Positives = 73/136 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIGGL D +++DL+D G+V + L D +G S+GF FV F+ E K +D+
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 168 LHSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K L GK I R +TK ++F+G + + E++ R+ G VE+IEL
Sbjct: 62 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPM 119
Query: 222 DPQNPSRNRGFSFVLY 237
D + R RGF F+ +
Sbjct: 120 DNKTNKR-RGFCFITF 134
Score = 135 (52.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 51/173 (29%), Positives = 78/173 (45%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
++FIG + + T+ + + G V+ T++L DP R+RGF FVL+ + D
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD-- 56
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ M KL+G DPK VK ++V + +T EKI+E F
Sbjct: 57 -KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGF 109
Query: 307 GEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
GEV + +P K+ KR F FI + E K ++ +KY G S V
Sbjct: 110 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKV 160
Score = 119 (46.9 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 74 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 133
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 134 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 164
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 200 (75.5 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 61/189 (32%), Positives = 91/189 (48%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S AG +E S EA D EE+E + S +H + ++FIGGL
Sbjct: 49 SAAGGTEGG-STEAEGAKIDASKNEEDEGHSNS-----SPRHTEAATAQREEWKMFIGGL 102
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
D +++DL+D GDV + L D +G S+GF FV F+ E K +D+ K L
Sbjct: 103 SWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LN 161
Query: 175 GKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
GK I R +TK ++F+G + + E++ R+ G VE+IEL D + R
Sbjct: 162 GKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR 220
Query: 229 NRGFSFVLY 237
RGF F+ +
Sbjct: 221 -RGFCFITF 228
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 57/200 (28%), Positives = 87/200 (43%)
Query: 161 AKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIEL 219
+K DE HS T + + ++FIG + + T+ + + G V+ T++L
Sbjct: 69 SKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKL 128
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
DP R+RGF FVL+ + D + M KL+G DPK
Sbjct: 129 --DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-----IDPKRAKAMKTK- 176
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALK 337
VK ++V + +T EKI+E F GEV + +P K+ KR F FI + E K
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Query: 338 AVKDTEKYEIDGKSHLHFPV 357
++ +KY G S V
Sbjct: 237 IME--KKYHNVGLSKCEIKV 254
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 168 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 228 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 258
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 200 (75.5 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 61/189 (32%), Positives = 91/189 (48%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S AG +E S EA D EE+E + S +H + ++FIGGL
Sbjct: 49 SAAGGTEGG-STEAEGAKIDASKNEEDEGHSNS-----SPRHTEAATAQREEWKMFIGGL 102
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
D +++DL+D GDV + L D +G S+GF FV F+ E K +D+ K L
Sbjct: 103 SWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LN 161
Query: 175 GKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
GK I R +TK ++F+G + + E++ R+ G VE+IEL D + R
Sbjct: 162 GKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR 220
Query: 229 NRGFSFVLY 237
RGF F+ +
Sbjct: 221 -RGFCFITF 228
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 57/200 (28%), Positives = 87/200 (43%)
Query: 161 AKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIEL 219
+K DE HS T + + ++FIG + + T+ + + G V+ T++L
Sbjct: 69 SKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKL 128
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
DP R+RGF FVL+ + D + M KL+G DPK
Sbjct: 129 --DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-----IDPKRAKAMKTK- 176
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALK 337
VK ++V + +T EKI+E F GEV + +P K+ KR F FI + E K
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Query: 338 AVKDTEKYEIDGKSHLHFPV 357
++ +KY G S V
Sbjct: 237 IME--KKYHNVGLSKCEIKV 254
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 168 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 228 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 258
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 197 (74.4 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 59/187 (31%), Positives = 92/187 (49%)
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
AG +E SAE+ D EE+E + S +H++ ++FIGGL
Sbjct: 53 AGGTE-GSSAESEGAKIDASKNEEDEGHSNS-----SPRHSEAATAQREEWKMFIGGLSW 106
Query: 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
D +++DL+D G+V + L D +G S+GF FV F+ E K +D+ K L GK
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGK 165
Query: 177 TI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
I R +TK ++F+G + + E++ R+ G VE+IEL D + R R
Sbjct: 166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-R 223
Query: 231 GFSFVLY 237
GF F+ +
Sbjct: 224 GFCFITF 230
Score = 147 (56.8 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 60/218 (27%), Positives = 97/218 (44%)
Query: 144 SGESKGFAFVSFRSK-EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDE 202
+G ++G + S +K + +K DE HS + + + ++FIG + + T+ +
Sbjct: 53 AGGTEGSSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112
Query: 203 FRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
+ G V+ T++L DP R+RGF FVL+ + D + M KL+G
Sbjct: 113 LKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSG 320
DPK VK ++V + +T EKI+E F GEV + +P K+
Sbjct: 167 -----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220
Query: 321 KR-DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
KR F FI + E K ++ +KY G S V
Sbjct: 221 KRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKV 256
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
>UNIPROTKB|D6R9M7 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00967035
ProteinModelPortal:D6R9M7 SMR:D6R9M7 Ensembl:ENST00000505414
HOGENOM:HOG000206189 ArrayExpress:D6R9M7 Bgee:D6R9M7 Uniprot:D6R9M7
Length = 159
Score = 183 (69.5 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 37/94 (39%), Positives = 62/94 (65%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVP 195
+A+ EL++ E++ G+ + S RLFIG +P
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIP 159
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 180 (68.4 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 54/190 (28%), Positives = 101/190 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ E+DLR+L E G V+E+ +++D+ +SKG FV+F +++ A +A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LFIG + K E++ R + G +E
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQ-IE 135
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
+++ P SR G +FV + A A + + M A ++G ++P + +AD +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPIVVKFADTQKDK 192
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 193 EQKRIAQQLQ 202
Score = 144 (55.7 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 42/156 (26%), Positives = 75/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G VP++W E + R++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L++ I + I+ +F
Sbjct: 75 AQNALH-NMKILPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCNENDIRVMFSP 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ + R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 166
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 397 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 456
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 457 AIQSMNGFQIGMKRLKVQLKRSKN 480
Score = 63 (27.2 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + ++F G V KV + + + FGF+ Y SA A++
Sbjct: 402 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 461
Query: 343 EKYEIDGK 350
++I K
Sbjct: 462 NGFQIGMK 469
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 180 (68.4 bits), Expect = 9.2e-14, Sum P(2) = 9.2e-14
Identities = 54/190 (28%), Positives = 101/190 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ E+DLR+L E G V+E+ +++D+ +SKG FV+F +++ A +A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LFIG + K E++ R + G +E
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQ-IE 135
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
+++ P SR G +FV + A A + + M A ++G ++P + +AD +
Sbjct: 136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPIVVKFADTQKDK 192
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 193 EQKRIAQQLQ 202
Score = 144 (55.7 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 42/156 (26%), Positives = 75/156 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G VP++W E + R++ E G V I +++D QNP +++G FV +Y A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L++ I + I+ +F
Sbjct: 75 AQNALH-NMKILPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCNENDIRVMFSP 130
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R F+ + R+ A A+K
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 166
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 401 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 460
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 461 AIQSMNGFQIGMKRLKVQLKRSKN 484
Score = 63 (27.2 bits), Expect = 9.2e-14, Sum P(2) = 9.2e-14
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + ++F G V KV + + + FGF+ Y SA A++
Sbjct: 406 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 465
Query: 343 EKYEIDGK 350
++I K
Sbjct: 466 NGFQIGMK 473
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 195 (73.7 bits), Expect = 9.9e-14, P = 9.9e-14
Identities = 60/189 (31%), Positives = 90/189 (47%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S G +E S EA D EE+E + S +H + ++FIGGL
Sbjct: 49 SAPGGTEGG-STEAEGAKIDASKNEEDEGHSNS-----SPRHTEAATAQREEWKMFIGGL 102
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
D +++DL+D GDV + L D +G S+GF FV F+ E K +D+ K L
Sbjct: 103 SWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LN 161
Query: 175 GKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
GK I R +TK ++F+G + + E++ R+ G VE+IEL D + R
Sbjct: 162 GKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR 220
Query: 229 NRGFSFVLY 237
RGF F+ +
Sbjct: 221 -RGFCFITF 228
Score = 147 (56.8 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 57/200 (28%), Positives = 87/200 (43%)
Query: 161 AKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIEL 219
+K DE HS T + + ++FIG + + T+ + + G V+ T++L
Sbjct: 69 SKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKL 128
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
DP R+RGF FVL+ + D + M KL+G DPK
Sbjct: 129 --DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-----IDPKRAKAMKTK- 176
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALK 337
VK ++V + +T EKI+E F GEV + +P K+ KR F FI + E K
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Query: 338 AVKDTEKYEIDGKSHLHFPV 357
++ +KY G S V
Sbjct: 237 IME--KKYHNVGLSKCEIKV 254
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 168 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 228 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 258
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 180 (68.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 55/190 (28%), Positives = 101/190 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ SE+DLR+L E G V+E+ +++D+ +SKG FV+F +++ A +A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LFIG + K TE++ R + G +E
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 162
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
++ P SR G + V + A A + + M A ++G ++P + +AD +
Sbjct: 163 ECRILWGPDGLSR--GCALVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 219
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 220 EQKRMAQQLQ 229
Score = 138 (53.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 41/156 (26%), Positives = 74/156 (47%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G VP+ W+E + R++ E G V I +++D QNP +++G FV +Y A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 101
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L++ I + I+ +F
Sbjct: 102 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 157
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
G++ + + G G R + + R+ A A+K
Sbjct: 158 FGQIEECRILWGPDGLSRGCALVTFTTRAMAQTAIK 193
Score = 127 (49.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + A+
Sbjct: 425 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 484
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 485 AIQSMNGFQIGMKRLKVQLKRSKN 508
Score = 63 (27.2 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P + + ++F G V KV + + + FGF+ Y SA A++
Sbjct: 430 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 489
Query: 343 EKYEIDGK 350
++I K
Sbjct: 490 NGFQIGMK 497
>DICTYBASE|DDB_G0279539 [details] [associations]
symbol:DDB_G0279539 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279539 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000031 eggNOG:COG1404
RefSeq:XP_001732991.1 ProteinModelPortal:B0G128
EnsemblProtists:DDB0234241 GeneID:8622096 KEGG:ddi:DDB_G0279539
OMA:MSKDEND Uniprot:B0G128
Length = 373
Score = 198 (74.8 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 68/249 (27%), Positives = 122/249 (48%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE- 167
VF+ + + ++E L++ IGDV E ++K+K SGE+KG+ FV F A+ AI+
Sbjct: 12 VFVSDIARGVTDEQLKEEFSKIGDVLEAVVVKNKHSGETKGYGFVKFYHMADAQHAIETP 71
Query: 168 ---LHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L + GK ++ +L+++KN L+IG++PK TE E R +E++G + T++ +
Sbjct: 72 NPPLFKDGITGKPQMVKVTLADSKNTLYIGHIPKGLTEKEVRAELEEIG--MCTLKSFEF 129
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
PS+ G++ D+ + + A + + T S K + D + +
Sbjct: 130 -DGPSKLYGYA-------QFKDH--ETTIKAIKSIQKSKYTASLTPSKRSNDDGKSPT-T 178
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMPPGKSGKRDFG--FIHYAERSSALKAV 339
K L+V+ I E +++ Q E + K+V+P K G FI Y +S K +
Sbjct: 179 KVLFVRGIRSQDEGELLRK--QLGPELIEKIVVPLDSQKKTPLGHAFI-YCNSTSDAKII 235
Query: 340 KDTEKYEID 348
D ++ D
Sbjct: 236 MD-HNHDFD 243
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 55/205 (26%), Positives = 87/205 (42%)
Query: 74 DTPH-VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGD 132
D H +E P G K + ++ L + + ++IG +PK +E+++R E IG
Sbjct: 63 DAQHAIETPNPPLFKDGITGKPQMVKV-TLADSKNTLYIGHIPKGLTEKEVRAELEEIG- 120
Query: 133 VFEVRLMKDKE-SGESKGFAFVSFRSKEFAKKAIDELH-SKELKGKTI--RCS---LSET 185
+ +K E G SK + + F+ E KAI + SK T R + S T
Sbjct: 121 ---MCTLKSFEFDGPSKLYGYAQFKDHETTIKAIKSIQKSKYTASLTPSKRSNDDGKSPT 177
Query: 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
LF+ + ++DE + + +GP E IE I P + + Y N+ +D
Sbjct: 178 TKVLFVRGIR---SQDEGELLRKQLGP--ELIEKIVVPLDSQKKTPLGHAFIYCNSTSDA 232
Query: 246 SRQKMLNANFKLDGNTPTISWADPK 270
N +F G TISW PK
Sbjct: 233 KIIMDHNHDFDFMGQKLTISWGLPK 257
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 197 (74.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 59/187 (31%), Positives = 92/187 (49%)
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
AG +E SAE+ D EE+E + S +H++ ++FIGGL
Sbjct: 53 AGGTE-GSSAESEGAKIDASKNEEDEGHSNS-----SPRHSEAATAQREEWKMFIGGLSW 106
Query: 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
D +++DL+D G+V + L D +G S+GF FV F+ E K +D+ K L GK
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGK 165
Query: 177 TI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
I R +TK ++F+G + + E++ R+ G VE+IEL D + R R
Sbjct: 166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-R 223
Query: 231 GFSFVLY 237
GF F+ +
Sbjct: 224 GFCFITF 230
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 60/218 (27%), Positives = 97/218 (44%)
Query: 144 SGESKGFAFVSFRSK-EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDE 202
+G ++G + S +K + +K DE HS + + + ++FIG + + T+ +
Sbjct: 53 AGGTEGSSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112
Query: 203 FRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
+ G V+ T++L DP R+RGF FVL+ + D + M KL+G
Sbjct: 113 LKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSG 320
DPK VK ++V + +T EKI+E F GEV + +P K+
Sbjct: 167 -----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220
Query: 321 KR-DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
KR F FI + E K ++ +KY G S V
Sbjct: 221 KRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKV 256
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 202 (76.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 63/254 (24%), Positives = 114/254 (44%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G + +R+ +D + S G+A V+F A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ + R +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ + ++G FV + A+ + +KM N D + K + +
Sbjct: 131 VCDENGSKGHGFVHFETEEAAERAIEKM-NGMLLNDRKVFVGQFKSRKEREAELGTRTKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D + + LF R G+V V + + GK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGKSHLH 354
+ E++GK H++
Sbjct: 250 EMNGKELNGK-HIY 262
Score = 146 (56.5 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L + V+I ++ L L G V V++M D E G+SKG
Sbjct: 174 KSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKK 269
Score = 90 (36.7 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYVKN+ D E++++ F G +T KV+ G+S + FGF+ ++ A KAV +
Sbjct: 296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRS--KGFGFVCFSSPEEATKAVSE 352
Score = 40 (19.1 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ +K G TI K R++GF FV +
Sbjct: 296 LYVKNLDDGIDDERLQKEFSPFG----TITSTKVMTEGGRSKGFGFVCF 340
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 193 (73.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 73/283 (25%), Positives = 143/283 (50%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP + +KD+ A+ L L N LP ++++L+++ E D E+RL+
Sbjct: 301 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 345
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKEL-----KGKTI--RCSLSET----KNRLF 190
+ G+SKG A++ F+++ A+K ++E E+ KG++ R + T L
Sbjct: 346 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 404
Query: 191 IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
+ N+ + TE+ ++V E IK PQN + +++G++F+ + A + +++
Sbjct: 405 LSNLSYSATEETLQEVFEKATH-------IKVPQNQNGKSKGYAFIEF---ASFEDAKEA 454
Query: 250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N + ++G + P+ +P+ A + K L+VK + ++T+ E +KE F G
Sbjct: 455 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFD--GS 510
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
+ ++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 511 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 552
Score = 175 (66.7 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 78/319 (24%), Positives = 144/319 (45%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEK----PTASVGEDEKDKHAQLLALPP------NGSE-- 108
E+D E + +D++ EEEE+ P K + A+ A P G+E
Sbjct: 167 EEDDDDEDDHDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPT 226
Query: 109 ----VFIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAK 162
+F+G L + S +L+ I D+F + D G S+ F +V F S E +
Sbjct: 227 TSFNLFVGNLNFNKSAPELKT---GISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLE 283
Query: 163 KAIDELHSKELKGKTIRCSLSETKNR--------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
KA+ EL ++ G I+ + K+ L N+P T+DE ++V ED V
Sbjct: 284 KAL-ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---V 339
Query: 215 ETIELI-KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273
E I L+ KD +++G +++ + A A+ + ++ G D +
Sbjct: 340 E-IRLVSKD----GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQ--DHRGGK 392
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
+ S + + K L + N+ + + E ++E+F++ T + +P ++GK + + FI +A
Sbjct: 393 N-STWSGESKTLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASF 448
Query: 333 SSALKAVKDTEKYEIDGKS 351
A +A+ K EI+G++
Sbjct: 449 EDAKEALNSCNKREIEGRA 467
Score = 167 (63.8 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 54/226 (23%), Positives = 104/226 (46%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKP----TASVGEDEKDKHAQLLALPPNGSEVF 110
SK G S+ E D +EE++ T G+ + + + +
Sbjct: 345 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 404
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
+ L A+EE L+++ E + + ++G+SKG+AF+ F S E AK+A++ +
Sbjct: 405 LSNLSYSATEETLQEVFEKATHI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK 460
Query: 171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+E++G+ IR L + + P K +ED + +++ G ++ D +
Sbjct: 461 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDRE 520
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
S ++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 521 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 563
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 74/305 (24%), Positives = 123/305 (40%)
Query: 58 GASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDE-------KDKHAQLLALPPNGSEVF 110
GA+ + +DDD EEEE+ E+E K K A A+P
Sbjct: 91 GAAPATDDEDDEDDDDDDDEEEEEEEEDEDDSEEEPMEIVPAKGKKAPAKAVPVKAKSTA 150
Query: 111 IGGLPKD-----ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV-SFRSKEFAK-K 163
+D EE+ D E D E +++E E + R KE AK K
Sbjct: 151 EDEDEEDDDDDDEEEEEEDDDDEDDHDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQK 210
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
A E ++++G S + LF+GN+ N + E + I D+ + ++
Sbjct: 211 AAPEAKKQKVEGTEPTTSFN-----LFVGNLNFNKSAPELKTGISDLF-AKNDLAVVDVR 264
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
SR F +V + + D + L K+ GN I PK S +
Sbjct: 265 IGVSRK--FGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKDRDAR 315
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
L KN+P + +++KE+F+ E+ ++V GKS + +I + + A K +++ +
Sbjct: 316 TLLAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQ 372
Query: 344 KYEID 348
EID
Sbjct: 373 GTEID 377
Score = 49 (22.3 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
KA ++ +D+ E + DDD EEE+ +DE+++ +
Sbjct: 145 KAKSTAEDEDEEDD--DDDDEEEEEEDDDDEDDHDDEEEEEEE 185
Score = 41 (19.5 bits), Expect = 9.9e-13, Sum P(2) = 9.9e-13
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 66 AEANRNDDDTPHVEEEEKPTASVGEDEKDKHA 97
A+A +N D+ + K EDE+ K A
Sbjct: 5 AKAGKNQGDSKKMAPPPKEVEEDSEDEEIKRA 36
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 193 (73.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 73/283 (25%), Positives = 143/283 (50%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP + +KD+ A+ L L N LP ++++L+++ E D E+RL+
Sbjct: 306 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 350
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKEL-----KGKTI--RCSLSET----KNRLF 190
+ G+SKG A++ F+++ A+K ++E E+ KG++ R + T L
Sbjct: 351 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 409
Query: 191 IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
+ N+ + TE+ ++V E IK PQN + +++G++F+ + A + +++
Sbjct: 410 LSNLSYSATEETLQEVFEKATH-------IKVPQNQNGKSKGYAFIEF---ASFEDAKEA 459
Query: 250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N + ++G + P+ +P+ A + K L+VK + ++T+ E +KE F G
Sbjct: 460 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFD--GS 515
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
+ ++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 516 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 557
Score = 175 (66.7 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 78/319 (24%), Positives = 144/319 (45%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEK----PTASVGEDEKDKHAQLLALPP------NGSE-- 108
E+D E + +D++ EEEE+ P K + A+ A P G+E
Sbjct: 172 EEDDDDEDDHDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPT 231
Query: 109 ----VFIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAK 162
+F+G L + S +L+ I D+F + D G S+ F +V F S E +
Sbjct: 232 TSFNLFVGNLNFNKSAPELKT---GISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLE 288
Query: 163 KAIDELHSKELKGKTIRCSLSETKNR--------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
KA+ EL ++ G I+ + K+ L N+P T+DE ++V ED V
Sbjct: 289 KAL-ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---V 344
Query: 215 ETIELI-KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273
E I L+ KD +++G +++ + A A+ + ++ G D +
Sbjct: 345 E-IRLVSKD----GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQ--DHRGGK 397
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
+ S + + K L + N+ + + E ++E+F++ T + +P ++GK + + FI +A
Sbjct: 398 N-STWSGESKTLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASF 453
Query: 333 SSALKAVKDTEKYEIDGKS 351
A +A+ K EI+G++
Sbjct: 454 EDAKEALNSCNKREIEGRA 472
Score = 167 (63.8 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 54/226 (23%), Positives = 104/226 (46%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKP----TASVGEDEKDKHAQLLALPPNGSEVF 110
SK G S+ E D +EE++ T G+ + + + +
Sbjct: 350 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 409
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
+ L A+EE L+++ E + + ++G+SKG+AF+ F S E AK+A++ +
Sbjct: 410 LSNLSYSATEETLQEVFEKATHI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK 465
Query: 171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+E++G+ IR L + + P K +ED + +++ G ++ D +
Sbjct: 466 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDRE 525
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
S ++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 526 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 568
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 74/305 (24%), Positives = 123/305 (40%)
Query: 58 GASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDE-------KDKHAQLLALPPNGSEVF 110
GA+ + +DDD EEEE+ E+E K K A A+P
Sbjct: 96 GAAPATDDEDDEDDDDDDDEEEEEEEEDEDDSEEEPMEIVPAKGKKAPAKAVPVKAKSTA 155
Query: 111 IGGLPKD-----ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV-SFRSKEFAK-K 163
+D EE+ D E D E +++E E + R KE AK K
Sbjct: 156 EDEDEEDDDDDDEEEEEEDDDDEDDHDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQK 215
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
A E ++++G S + LF+GN+ N + E + I D+ + ++
Sbjct: 216 AAPEAKKQKVEGTEPTTSFN-----LFVGNLNFNKSAPELKTGISDLF-AKNDLAVVDVR 269
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
SR F +V + + D + L K+ GN I PK S +
Sbjct: 270 IGVSRK--FGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKDRDAR 320
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
L KN+P + +++KE+F+ E+ ++V GKS + +I + + A K +++ +
Sbjct: 321 TLLAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQ 377
Query: 344 KYEID 348
EID
Sbjct: 378 GTEID 382
Score = 49 (22.3 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
KA ++ +D+ E + DDD EEE+ +DE+++ +
Sbjct: 150 KAKSTAEDEDEEDD--DDDDEEEEEEDDDDEDDHDDEEEEEEE 190
Score = 44 (20.5 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 56 KAGASEKDQSAEANRNDDDTPHVEEEEKP--TASVGEDEKDK 95
K + E+D+ +D+D P V + A +DE D+
Sbjct: 66 KEDSDEEDEDDSEEEDDEDEPAVRKAAAAFGAAPATDDEDDE 107
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 187 (70.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 50/157 (31%), Positives = 79/157 (50%)
Query: 88 VGEDEKD-KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE 146
VG +H++ ++FIGGL D +++DL+D G+V + L D +G
Sbjct: 10 VGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 69
Query: 147 SKGFAFVSFRSKEFAKKAIDELHSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTE 200
S+GF FV F+ E K +D+ K L GK I R +TK ++F+G + + E
Sbjct: 70 SRGFGFVLFKESESVDKVMDQKEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE 128
Query: 201 DEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
++ R+ G VE+IEL D + R RGF F+ +
Sbjct: 129 EKIREYFGGFGE-VESIELPMDNKTNKR-RGFCFITF 163
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 51/173 (29%), Positives = 78/173 (45%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
++FIG + + T+ + + G V+ T++L DP R+RGF FVL+ + D
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD-- 85
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ M KL+G DPK VK ++V + +T EKI+E F
Sbjct: 86 -KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGF 138
Query: 307 GEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
GEV + +P K+ KR F FI + E K ++ +KY G S V
Sbjct: 139 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKV 189
Score = 119 (46.9 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 103 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 162
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 163 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 193
>UNIPROTKB|Q6DCB7 [details] [associations]
symbol:dnd1 "Dead end protein homolog 1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0017091 "AU-rich element binding"
evidence=ISS] [GO:0060965 "negative regulation of gene silencing by
miRNA" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0060965 HOVERGEN:HBG051370 EMBL:BC078132
EMBL:AY321494 UniGene:Xl.29785 ProteinModelPortal:Q6DCB7
Xenbase:XB-GENE-1015636 Uniprot:Q6DCB7
Length = 371
Score = 197 (74.4 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 53/165 (32%), Positives = 89/165 (53%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +GSEVFIG +P+D E+ L L + +G ++E RLM SG ++GFA+ + S+ A
Sbjct: 73 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMTF-SGLNRGFAYARYISRRQAI 131
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L+ E+ KG I S K+ L + +P N+ E+ + V+++V GV +I L
Sbjct: 132 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHP 191
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
P S+ + V Y ++ A +++ + + L G T++W
Sbjct: 192 SPTKESQV--LAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 234
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 178 (67.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 45/142 (31%), Positives = 84/142 (59%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DL+ L E G + E+ ++KD+ +G KG AF+++ ++E A KA +
Sbjct: 137 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 196
Query: 168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G T ++ + SE++ +LF+G + K TE++ ++ E G +E +
Sbjct: 197 LHEQKTLPGMTRPIQVKPADSESRGEDRKLFVGMLNKQQTEEDVYRLFEPYGV-IEECTV 255
Query: 220 IKDPQNPSRNRGFSFVLYYNNA 241
++ P S+ G +FV + +A
Sbjct: 256 LRGPDGNSK--GCAFVKFSTHA 275
Score = 109 (43.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K +EED+ L EP G + E +++ + G SKG AFV F + A+ AI
Sbjct: 225 KLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPD-GNSKGCAFVKFSTHAEAQSAISA 283
Query: 168 LHSKE 172
LH +
Sbjct: 284 LHGSQ 288
Score = 66 (28.3 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L++ ++P ++ ++F G V +KV M + + FGF+ + +SA A++
Sbjct: 514 LFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 573
Query: 343 EKYEIDGK 350
++I K
Sbjct: 574 NGFQIGMK 581
Score = 49 (22.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 15/62 (24%), Positives = 34/62 (54%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
LFI ++P+ + ++E ++ G + + ++ D + ++++ F FV + N A A + Q
Sbjct: 514 LFIYHLPQEFGDNELMQMFLPFGTVISS-KVFMD-RATNQSKCFGFVSFDNPASAQAAIQ 571
Query: 249 KM 250
M
Sbjct: 572 AM 573
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 179 (68.1 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 52/190 (27%), Positives = 102/190 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
++F+G +P+ SE+ LR+L EP G V+E+ +++D+ +SKG FV++ +++ A +A
Sbjct: 55 KMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQ 114
Query: 166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ LH+ K L G ++ + SE N +LF+G + K E++ R + G +E
Sbjct: 115 NALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYGQ-IE 173
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
+++ P SR G +FV + A S K ++ + ++G ++P + +AD +
Sbjct: 174 ECRILRGPDGLSR--GCAFVTFTARQMAQ-SAIKSMHQSQTMEGCSSPIVVKFADTQKDK 230
Query: 274 DHSAAASQVK 283
+ A Q++
Sbjct: 231 EQKRIAQQLQ 240
Score = 157 (60.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 46/168 (27%), Positives = 82/168 (48%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
++F+G +P+ W+ED+ R++ E G V I +++D QNP +++G FV YY A
Sbjct: 55 KMFVGQIPRTWSEDQLRELFEPYG-AVYEINVLRDRSQNPPQSKGCCFVTYYTRKSA-LE 112
Query: 247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
Q L+ N K L G I P + ++A + L+V I + I+ +F
Sbjct: 113 AQNALH-NMKILPGMHHPIQMK-PADSEKNNAVED--RKLFVGMISKKCNENDIRLMFSP 168
Query: 306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVKDTEKYE-IDGKS 351
+G++ + + G G R F+ + R A A+K + + ++G S
Sbjct: 169 YGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCS 216
Score = 125 (49.1 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI LP++ ++DL + P G+V ++ DK++ SK F FVS+ + ++
Sbjct: 447 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQA 506
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L +KN
Sbjct: 507 AIQSMNGFQIGMKRLKVQLKRSKN 530
Score = 63 (27.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
SAA SQ + L++ ++P + + ++F G V KV + + + FGF+
Sbjct: 438 SAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 497
Query: 329 YAERSSALKAVKDTEKYEIDGK 350
Y S+ A++ ++I K
Sbjct: 498 YDNPVSSQAAIQSMNGFQIGMK 519
>UNIPROTKB|F1NZU2 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:AADN02002396 IPI:IPI00570859
Ensembl:ENSGALT00000025521 ArrayExpress:F1NZU2 Uniprot:F1NZU2
Length = 447
Score = 142 (55.0 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 26/63 (41%), Positives = 46/63 (73%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 157 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 216
Query: 163 KAI 165
+A+
Sbjct: 217 EAV 219
Score = 103 (41.3 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 278 AASQVKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
A VK L+V+N+ NT TE+I E F + G++ +V K K D+ FIH+ ER A+
Sbjct: 218 AVKLVKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAV 270
Query: 337 KAVKDTEKYEIDGKS 351
KA+++ +++G++
Sbjct: 271 KAMEEMNGKDLEGEN 285
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 179 (68.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 48/169 (28%), Positives = 88/169 (52%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K +++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 168 LHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+ L G+ I + +++ K+ ++F+G + TE++ R+ + G +E IEL D
Sbjct: 61 KEHR-LDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 118
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANF-KLDGNTPTISWADPK 270
P+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 119 PKTNKR-RGFVFITFKEEDPV----KKVLEKKFHNVSGSKCEIKVAQPK 162
Score = 125 (49.1 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 43/166 (25%), Positives = 78/166 (46%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
++F+G + + ++ + + G + TI++ DP N R+RGF F+L+ S
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKM--DP-NTGRSRGFGFILFKEPG----S 53
Query: 247 RQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+K+L +LDG DPK + VK ++V + + EKI+E F
Sbjct: 54 VEKVLEQKEHRLDGRL-----IDPKKAM--AMKKDPVKKIFVGGLNPEATEEKIREYFGE 106
Query: 306 HGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
GE+ + +P P + +R F FI + E +K V + + + + G
Sbjct: 107 FGEIEAIELPMDPKTNKRRGFVFITFKEEDP-VKKVLEKKFHNVSG 151
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 195 (73.7 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 59/187 (31%), Positives = 92/187 (49%)
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
AG +E SAE+ D EE+E + S +H++ ++FIGGL
Sbjct: 53 AGGTEGG-SAESEGAKIDASKNEEDEGHSNS-----SPRHSEAATAQREEWKMFIGGLSW 106
Query: 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
D +++DL+D G+V + L D +G S+GF FV F+ E K +D+ K L GK
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGK 165
Query: 177 TI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
I R +TK ++F+G + + E++ R+ G VE+IEL D + R R
Sbjct: 166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-R 223
Query: 231 GFSFVLY 237
GF F+ +
Sbjct: 224 GFCFITF 230
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 60/218 (27%), Positives = 97/218 (44%)
Query: 144 SGESKGFAFVSFRSK-EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDE 202
+G ++G + S +K + +K DE HS + + + ++FIG + + T+ +
Sbjct: 53 AGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112
Query: 203 FRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
+ G V+ T++L DP R+RGF FVL+ + D + M KL+G
Sbjct: 113 LKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSG 320
DPK VK ++V + +T EKI+E F GEV + +P K+
Sbjct: 167 -----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220
Query: 321 KR-DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
KR F FI + E K ++ +KY G S V
Sbjct: 221 KRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKV 256
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 178 (67.7 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 51/187 (27%), Positives = 88/187 (47%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI-D 166
++F+GGL ++E LR G+V + +MKDK + +S+GF FV F+ +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
H+ + + + S + N++F+G +P N E E R+ + G E + +I D +
Sbjct: 71 RPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVV-MIYDAEK- 128
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADP---KSTPDHSAAASQV 282
R RGF F+ + + D + +N +F + G + A+P KS ASQ
Sbjct: 129 QRPRGFGFITFEDEQSVDQA----VNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQW 184
Query: 283 KALYVKN 289
+ V N
Sbjct: 185 GSRVVPN 191
Score = 136 (52.9 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 46/165 (27%), Positives = 81/165 (49%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G + + T++ R G V+ + ++KD + +++RGF FV + + C
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCV-IMKD-KTTNQSRGFGFVKFKDPNCVG--- 65
Query: 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
+ + LDG P+S D+S + ++V IP N +++E F++ G
Sbjct: 66 TVLASRPHTLDGRNQK----GPRS--DNSKS----NKIFVGGIPHNCGETELREYFKKFG 115
Query: 308 EVTKVVM--PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350
VT+VVM K R FGFI + + S +AV + ++I GK
Sbjct: 116 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGK 159
Score = 126 (49.4 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 22/81 (27%), Positives = 48/81 (59%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+GG+P + E +LR+ + G V EV ++ D E +GF F++F ++ +A++
Sbjct: 91 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 150
Query: 167 ELHSKELKGKTIRCSLSETKN 187
+H ++ GK + +E ++
Sbjct: 151 -MHFHDIMGKKVEVKRAEPRD 170
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 177 (67.4 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 40/133 (30%), Positives = 79/133 (59%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A K
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A LH K L G + I+ +++++R LF+G + K T+++ RK+ E G ++
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 216 TIELIKDPQNPSR 228
+++ P S+
Sbjct: 123 ECTVLRGPDGTSK 135
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 189 (71.6 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 49/172 (28%), Positives = 90/172 (52%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKV 127
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+D+ + L G+ I + +++ K+ ++F+G + TE++ R+ + G +E IEL
Sbjct: 128 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIEL 185
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
DP++ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 186 PMDPKSNKR-RGFVFITFKEEEPV----KKVLEKKFHTISGSKCEIKVAQPK 232
Score = 139 (54.0 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 49/181 (27%), Positives = 87/181 (48%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI++ DP N R+RG
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 112
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ + S +K+L+ +LDG DPK + VK ++V +
Sbjct: 113 FGFILFKDAT----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 161
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
+ EKI+E F GE+ + +P P + +R F FI + E +K V + + + I
Sbjct: 162 NPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEP-VKKVLEKKFHTIS 220
Query: 349 G 349
G
Sbjct: 221 G 221
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 199 (75.1 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 59/179 (32%), Positives = 97/179 (54%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N ++FIG +P+ A+E+D+R L E GDV EV L+KD+++GE +G FV + + E A++A
Sbjct: 120 NYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERA 179
Query: 165 IDELHSK-ELKGKT----IRCSLSETK------NRLFIGNVPKNWTEDEFRKVIEDVGPG 213
I LH++ L G +R + E + ++LF+ ++ K T E ++ G
Sbjct: 180 IRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGH- 238
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTPTI-SWADPK 270
VE + ++KD SR G FV + + A + L+ N+ + G P I +ADPK
Sbjct: 239 VEDVYIMKDGMRQSR--GCGFVKFSSREPA-LAAMSALSGNYVMRGCEQPLIIRFADPK 294
Score = 154 (59.3 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 48/155 (30%), Positives = 80/155 (51%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIG+VP+ TED+ R + E+ G VE + LIKD + +G FV Y + A+ +
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVE-VALIKD-RKTGEQQGCCFVKYATSEEAERAI 180
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + H A + L+V ++ + ++I+E+F
Sbjct: 181 RALHN-QYTLPGAMGPIQVRYADGERER-HGAIEHK---LFVASLNKQATAKEIEEIFAP 235
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
+G V V +M G R GF+ ++ R AL A+
Sbjct: 236 YGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAM 270
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 199 (75.1 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 59/179 (32%), Positives = 97/179 (54%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N ++FIG +P+ A+E+D+R L E GDV EV L+KD+++GE +G FV + + E A++A
Sbjct: 120 NYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERA 179
Query: 165 IDELHSK-ELKGKT----IRCSLSETK------NRLFIGNVPKNWTEDEFRKVIEDVGPG 213
I LH++ L G +R + E + ++LF+ ++ K T E ++ G
Sbjct: 180 IRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGH- 238
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTPTI-SWADPK 270
VE + ++KD SR G FV + + A + L+ N+ + G P I +ADPK
Sbjct: 239 VEDVYIMKDGMRQSR--GCGFVKFSSREPA-LAAMSALSGNYVMRGCEQPLIIRFADPK 294
Score = 154 (59.3 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 48/155 (30%), Positives = 80/155 (51%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIG+VP+ TED+ R + E+ G VE + LIKD + +G FV Y + A+ +
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVE-VALIKD-RKTGEQQGCCFVKYATSEEAERAI 180
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + H A + L+V ++ + ++I+E+F
Sbjct: 181 RALHN-QYTLPGAMGPIQVRYADGERER-HGAIEHK---LFVASLNKQATAKEIEEIFAP 235
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAV 339
+G V V +M G R GF+ ++ R AL A+
Sbjct: 236 YGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAM 270
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 198 (74.8 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 62/253 (24%), Positives = 114/253 (45%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L ++ L + G V VR+ +D + S G+ +V++ + + A +A++
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 167 ELHSKELKGKTIRC--SLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
EL+ L G+ IR S+ + R +FI N+ K+ + GP + + +
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 163
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ DP S+ G+ FV Y + A + K LN D + K D S
Sbjct: 164 VAVDPSGQSK--GYGFVQYDTDEAAQGAIDK-LNGMLLNDKQVYVGPFVH-KLQRDPSGE 219
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALK 337
+ +YVKN+ ++ S E++ ++F G T V+M G+ + FGF+++ A +
Sbjct: 220 KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAAR 279
Query: 338 AVKDTEKYEIDGK 350
AV D K
Sbjct: 280 AVDALNGKTFDDK 292
Score = 120 (47.3 bits), Expect = 0.00033, P = 0.00033
Identities = 37/119 (31%), Positives = 62/119 (52%)
Query: 72 DDDTPHVEEEEKPTASVGEDE-KDKHAQLL---ALPPNGSEVFIGGLPKDASEEDLRDLC 127
DD V + +K S E E K K Q L A GS +++ L + +++ LR+
Sbjct: 290 DDKEWFVGKAQKK--SERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHF 347
Query: 128 EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
P G + ++M+D SG S+G FV+F + E A +AI E++ K + K + +L++ K
Sbjct: 348 APFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 191 (72.3 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 74/282 (26%), Positives = 134/282 (47%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP G D K A L N L + +E++L+++ E D E+RL+
Sbjct: 381 EKPK---GRDSKKVRAARTLLAKN--------LSFNITEDELKEVFE---DAMEIRLVS- 425
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN-RLFIGNVPKNWTE 200
+ G+SKG A++ F+S+ A+K ++E E+ G+++ + K R W+
Sbjct: 426 -QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSG 484
Query: 201 DEFRKVIEDVGPGV--ETIE-------LIKDPQNP-SRNRGFSFVLYYNNACADYSRQKM 250
+ V+ ++ ET+E IK PQNP + +G++F+ + A + +++ +
Sbjct: 485 ESKTLVLSNLSYSATKETLEEVFEKATFIKVPQNPHGKPKGYAFIEF---ASFEDAKEAL 541
Query: 251 LNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
+ N +++G T + S S K L+VK + ++T+ E +KE F+ G V
Sbjct: 542 NSCNKMEIEGRTIRLELQGSNSRSQPS------KTLFVKGLSEDTTEETLKESFE--GSV 593
Query: 310 TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 594 RARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 634
Score = 166 (63.5 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 69/312 (22%), Positives = 145/312 (46%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN-----GSE------V 109
++D+ E ++DD EEEE A+ G+ +K+ Q A GSE +
Sbjct: 252 DEDEDDEEEDDEDDDEEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFNL 311
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
FIG L + S +L+ + ++ ++ D +G ++ F +V F S E +KA+ EL
Sbjct: 312 FIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEKAL-ELT 369
Query: 170 SKELKGKTIRCSLSETKN----RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
++ G I+ + ++ R + KN + + +++V I L+
Sbjct: 370 GLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQD-- 427
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-----TPDHSAAAS 280
+++G +++ + + A A+ + ++ A ++DG + ++ + K T S +
Sbjct: 428 -GKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEKGQRQERTGKTSTWSG 484
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
+ K L + N+ + + E ++E+F++ T + +P GK + + FI +A A +A+
Sbjct: 485 ESKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHGKPKGYAFIEFASFEDAKEAL 541
Query: 340 KDTEKYEIDGKS 351
K EI+G++
Sbjct: 542 NSCNKMEIEGRT 553
Score = 165 (63.1 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 54/219 (24%), Positives = 105/219 (47%)
Query: 60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQLLALPPNGSEVFIGGLPKD 117
SE D AE N + ++ GE +++ + + + L
Sbjct: 440 SEAD--AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYS 497
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
A++E L ++ E F +++ ++ G+ KG+AF+ F S E AK+A++ + E++G+T
Sbjct: 498 ATKETLEEVFEKA--TF-IKVPQNPH-GKPKGYAFIEFASFEDAKEALNSCNKMEIEGRT 553
Query: 178 IRCSLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
IR L + +R LF+ + ++ TE+ ++ E G ++ D + S ++G
Sbjct: 554 IRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS-SKG 608
Query: 232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
F FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 609 FGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 645
Score = 48 (22.0 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHA 97
+K+ A E+D E ++D+ E++E E+E K A
Sbjct: 236 AKSVAEEEDDEEEDEDDEDEDDEEEDDEDDDEEEEEEEPVKAA 278
Score = 40 (19.1 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 56 KAGASEKDQSAEANRN----DDDTPHVEEEEKPTASVGEDEKD 94
K GA+ + A+ +N D D EE+E + +DE++
Sbjct: 124 KKGAATPAKGAKNGKNAKKEDSDEDEDEEDEDDSDEDEDDEEE 166
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 192 (72.6 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 58/187 (31%), Positives = 92/187 (49%)
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
+G +E SAE+ D EE+E + S +H++ ++FIGGL
Sbjct: 53 SGGTEGG-SAESEGAKIDASKNEEDEGHSNS-----SPRHSEAATAQREEWKMFIGGLSW 106
Query: 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
D +++DL+D G+V + L D +G S+GF FV F+ E K +D+ K L GK
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGK 165
Query: 177 TI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
I R +TK ++F+G + + E++ R+ G VE+IEL D + R R
Sbjct: 166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-R 223
Query: 231 GFSFVLY 237
GF F+ +
Sbjct: 224 GFCFITF 230
Score = 149 (57.5 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 61/218 (27%), Positives = 97/218 (44%)
Query: 144 SGESKGFAFVSFRSK-EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDE 202
SG ++G + S +K + +K DE HS + + + ++FIG + + T+ +
Sbjct: 53 SGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112
Query: 203 FRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
+ G V+ T++L DP R+RGF FVL+ + D + M KL+G
Sbjct: 113 LKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSG 320
DPK VK ++V + +T EKI+E F GEV + +P K+
Sbjct: 167 -----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220
Query: 321 KR-DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
KR F FI + E K ++ +KY G S V
Sbjct: 221 KRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKV 256
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 183 (69.5 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 47/136 (34%), Positives = 73/136 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIGGL D +++DL+D G+V + L D +G S+GF FV F+ E K +D+
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 168 LHSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K L GK I R +TK ++F+G + + E++ R+ G VE+IEL
Sbjct: 61 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGE-VESIELPM 118
Query: 222 DPQNPSRNRGFSFVLY 237
D + R RGF F+ +
Sbjct: 119 DNKTNKR-RGFCFITF 133
Score = 136 (52.9 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 51/173 (29%), Positives = 78/173 (45%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
++FIG + + T+ + + G V+ T++L DP R+RGF FVL+ + D
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD-- 55
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ M KL+G DPK VK ++V + +T EKI+E F
Sbjct: 56 -KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGAF 108
Query: 307 GEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
GEV + +P K+ KR F FI + E K ++ +KY G S V
Sbjct: 109 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKV 159
Score = 120 (47.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 73 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFIT 132
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 133 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 163
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 189 (71.6 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 41/139 (29%), Positives = 78/139 (56%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GG+ + + EDL G+V + ++ D+ +G S+GFAFV F + E K A+
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLAL-A 88
Query: 168 LHSKELKGKTIRCSLSETKN--RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
+ +KGK++ ++++ ++F+G +P +++E + R E G V+ IE D Q
Sbjct: 89 AREQTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGK-VDDIEWPFDKQT 147
Query: 226 PSRNRGFSFVLYYNNACAD 244
+R R F+F+++ AD
Sbjct: 148 KAR-RNFAFIVFEEEESAD 165
Score = 124 (48.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+GGLP D SE+DLR E G V ++ DK++ + FAF+ F +E A KA +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ 170
Query: 168 LHSKELKGKTIRCSLSE 184
+K+ G T C + +
Sbjct: 171 --TKQTFG-TRECDVKK 184
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 182 (69.1 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 47/135 (34%), Positives = 72/135 (53%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FIGGL D +++DL+D G+V + L D +G S+GF FV F+ E K +D+
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 169 HSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
K L GK I R +TK ++F+G + + E++ R+ G VE+IEL D
Sbjct: 61 EHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGE-VESIELPMD 118
Query: 223 PQNPSRNRGFSFVLY 237
+ R RGF F+ +
Sbjct: 119 NKTNKR-RGFCFITF 132
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 51/172 (29%), Positives = 77/172 (44%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+FIG + + T+ + + G V+ T++L DP R+RGF FVL+ + D
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD--- 54
Query: 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
+ M KL+G DPK VK ++V + +T EKI+E F G
Sbjct: 55 KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGAFG 108
Query: 308 EVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357
EV + +P K+ KR F FI + E K ++ +KY G S V
Sbjct: 109 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKV 158
Score = 120 (47.3 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 72 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFIT 131
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 132 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 162
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 192 (72.6 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 51/199 (25%), Positives = 101/199 (50%)
Query: 81 EEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMK 140
+ KP+ + +D+ + ++F+GGL ++ + + G++ + +MK
Sbjct: 16 DPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMK 75
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELH---SKELKGK-TI-RCSLS----ETKNRLFI 191
D+++G+ +GF FV++ K I + H K+++ K TI R S+S +TK ++F+
Sbjct: 76 DRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTK-KIFV 134
Query: 192 GNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
G +P + +DEF++ G ++ ++++D + R+RGF FV Y + D+ K
Sbjct: 135 GGIPSSVDDDEFKEFFMQFGE-LKEHQIMRD-HSTGRSRGFGFVTYESEDMVDHLLAK-- 190
Query: 252 NANFKLDGNTPTISWADPK 270
+L G I A+PK
Sbjct: 191 GNRIELSGTQVEIKKAEPK 209
Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 40/168 (23%), Positives = 79/168 (47%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
++ ++F+G + + T EF K G +++ ++KD + + RGF FV Y +++
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSV-IMKD-RKTGQPRGFGFVTYADSSVV 96
Query: 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
D K++ N + G I P+ + S+ + K ++V IP + ++ KE F
Sbjct: 97 D----KVIQDNHIIIGKQVEIKRTIPRGSM--SSNDFKTKKIFVGGIPSSVDDDEFKEFF 150
Query: 304 QRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDG 349
+ GE+ + +M +G+ R FGF+ Y + + E+ G
Sbjct: 151 MQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSG 198
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 192 (72.6 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 46/141 (32%), Positives = 85/141 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DL+ L E G ++E+ ++KD+ +G KG AF+++ +E A KA
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 168 LHS-KELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
LH K L G + I+ +++++R LF+G + K +ED+ R++ E G +E ++
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG-NIEECTIL 173
Query: 221 KDPQNPSRNRGFSFVLYYNNA 241
+ P S+ G +FV Y ++A
Sbjct: 174 RGPDGNSK--GCAFVKYSSHA 192
Score = 38 (18.4 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGK 350
FGF+ + +SA A++ ++I K
Sbjct: 432 FGFVSFDNPASAQTAIQAMNGFQIGMK 458
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 192 (72.6 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 46/141 (32%), Positives = 85/141 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DL+ L E G ++E+ ++KD+ +G KG AF+++ +E A KA
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 168 LHS-KELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
LH K L G + I+ +++++R LF+G + K +ED+ R++ E G +E ++
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG-NIEECTIL 173
Query: 221 KDPQNPSRNRGFSFVLYYNNA 241
+ P S+ G +FV Y ++A
Sbjct: 174 RGPDGNSK--GCAFVKYSSHA 192
Score = 38 (18.4 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGK 350
FGF+ + +SA A++ ++I K
Sbjct: 433 FGFVSFDNPASAQTAIQAMNGFQIGMK 459
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 192 (72.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 46/141 (32%), Positives = 85/141 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIG +P++ E+DL+ L E G ++E+ ++KD+ +G KG AF+++ +E A KA
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 168 LHS-KELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
LH K L G + I+ +++++R LF+G + K +ED+ R++ E G +E ++
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG-NIEECTIL 173
Query: 221 KDPQNPSRNRGFSFVLYYNNA 241
+ P S+ G +FV Y ++A
Sbjct: 174 RGPDGNSK--GCAFVKYSSHA 192
Score = 114 (45.2 bits), Expect = 0.00090, P = 0.00090
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K SE+D+R L E G++ E +++ + G SKG AFV + S A+ AI+
Sbjct: 142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 200
Query: 168 LHSKE 172
LH +
Sbjct: 201 LHGSQ 205
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 53/172 (30%), Positives = 84/172 (48%)
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
+G +E SAE+ D EE+E + S +H++ ++FIGGL
Sbjct: 53 SGGTEGG-SAESEGAKIDASKNEEDEGHSNS-----SPRHSEAATAQREEWKMFIGGLSW 106
Query: 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
D +++DL+D G+V + L D +G S+GF FV F+ E K +D+ K L GK
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGK 165
Query: 177 TI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
I R +TK ++F+G + + E++ R+ G VE+IEL D
Sbjct: 166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMD 216
Score = 128 (50.1 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 50/181 (27%), Positives = 82/181 (45%)
Query: 144 SGESKGFAFVSFRSK-EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDE 202
SG ++G + S +K + +K DE HS + + + ++FIG + + T+ +
Sbjct: 53 SGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112
Query: 203 FRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
+ G V+ T++L DP R+RGF FVL+ + D + M KL+G
Sbjct: 113 LKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSG 320
DPK VK ++V + +T EKI+E F GEV + +P K+
Sbjct: 167 -----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220
Query: 321 K 321
K
Sbjct: 221 K 221
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 196 (74.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 62/251 (24%), Positives = 123/251 (49%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L ++ +G V +R+ +D + +S G+A+V++ + A++A+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+ +KG+ R S L GN+ KN + K + D I K
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKV 135
Query: 223 PQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +++ + FV Y + A + +K+ N +L + KS + + ++
Sbjct: 136 ATDEFGKSKSYGFVHYEDEESAKEAIEKV-NG-VQLGSKNVYVGPFIKKS--ERATNDTK 191
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYVKN PD+ + +++LF +GE+T +++ ++ F FI+YA+ SA A+ +
Sbjct: 192 FTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK-FCFINYADAESAKNAMDN 250
Query: 342 TEKYEI--DGK 350
+I DG+
Sbjct: 251 LNGKKITDDGQ 261
Score = 150 (57.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 44/139 (31%), Positives = 72/139 (51%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHV--EEEEKPTASVGEDEKDKHAQLLALPPN---GSEV 109
+ AG+++KD++A ++ D TP++ + A K K L N G +
Sbjct: 395 NNAGSAKKDETAASDCAD--TPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
+I L + LR+L EP G + ++M+D E +SKGF FV F S+E A KA+ E+H
Sbjct: 453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 170 SKELKGKTIRCSLSETKNR 188
K + GK + L+E + +
Sbjct: 512 LKIINGKPLYVGLAEKREQ 530
Score = 139 (54.0 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 38/164 (23%), Positives = 79/164 (48%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++G++ ++ TE ++ VG V +I + +D ++ G+++V Y+N A A+ +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGH-VSSIRVCRDSVT-RKSLGYAYVNYHNLADAERALD 75
Query: 249 KMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ N K G + W S D S S ++VKN+ + + + + F G
Sbjct: 76 TLNYTNIK--GQPARLMW----SHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGN 129
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ + + GK + +GF+HY + SA +A++ ++ K+
Sbjct: 130 ILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKN 173
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 196 (74.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 62/251 (24%), Positives = 123/251 (49%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L ++ +G V +R+ +D + +S G+A+V++ + A++A+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+ +KG+ R S L GN+ KN + K + D I K
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKV 135
Query: 223 PQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +++ + FV Y + A + +K+ N +L + KS + + ++
Sbjct: 136 ATDEFGKSKSYGFVHYEDEESAKEAIEKV-NG-VQLGSKNVYVGPFIKKS--ERATNDTK 191
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYVKN PD+ + +++LF +GE+T +++ ++ F FI+YA+ SA A+ +
Sbjct: 192 FTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK-FCFINYADAESAKNAMDN 250
Query: 342 TEKYEI--DGK 350
+I DG+
Sbjct: 251 LNGKKITDDGQ 261
Score = 150 (57.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 44/139 (31%), Positives = 72/139 (51%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHV--EEEEKPTASVGEDEKDKHAQLLALPPN---GSEV 109
+ AG+++KD++A ++ D TP++ + A K K L N G +
Sbjct: 395 NNAGSAKKDETAASDCAD--TPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
+I L + LR+L EP G + ++M+D E +SKGF FV F S+E A KA+ E+H
Sbjct: 453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 170 SKELKGKTIRCSLSETKNR 188
K + GK + L+E + +
Sbjct: 512 LKIINGKPLYVGLAEKREQ 530
Score = 139 (54.0 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 38/164 (23%), Positives = 79/164 (48%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++G++ ++ TE ++ VG V +I + +D ++ G+++V Y+N A A+ +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGH-VSSIRVCRDSVT-RKSLGYAYVNYHNLADAERALD 75
Query: 249 KMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ N K G + W S D S S ++VKN+ + + + + F G
Sbjct: 76 TLNYTNIK--GQPARLMW----SHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGN 129
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKS 351
+ + + GK + +GF+HY + SA +A++ ++ K+
Sbjct: 130 ILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKN 173
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 188 (71.2 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 48/136 (35%), Positives = 73/136 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIGGL D +++DL+D GDV + L D +G S+GF FV F+ E K +D+
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 168 LHSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K L GK I R +TK ++F+G + + E++ R+ G VE+IEL
Sbjct: 137 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPM 194
Query: 222 DPQNPSRNRGFSFVLY 237
D + R RGF F+ +
Sbjct: 195 DNKTNKR-RGFCFITF 209
Score = 148 (57.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 57/192 (29%), Positives = 87/192 (45%)
Query: 170 SKELKGKTIRCSLSET-KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPS 227
S E +G I S +E + ++FIG + + T+ + + G V+ T++L DP
Sbjct: 58 STEAEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKL--DPIT-G 114
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYV 287
R+RGF FVL+ + D + M KL+G DPK VK ++V
Sbjct: 115 RSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFV 165
Query: 288 KNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKY 345
+ +T EKI+E F GEV + +P K+ KR F FI + E K ++ +KY
Sbjct: 166 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKY 223
Query: 346 EIDGKSHLHFPV 357
G S V
Sbjct: 224 HNVGLSKCEIKV 235
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 149 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 208
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 209 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 239
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 182 (69.1 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 41/135 (30%), Positives = 77/135 (57%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K +D+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 168 LHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+ L G+ I + +++ K+ ++F+G + TE++ R+ + G +E IEL D
Sbjct: 61 KEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 118
Query: 223 PQNPSRNRGFSFVLY 237
P++ R RGF F+ +
Sbjct: 119 PKSNKR-RGFVFITF 132
Score = 137 (53.3 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 46/166 (27%), Positives = 82/166 (49%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
++F+G + + ++ + + G V+ TI++ DP N R+RGF F+L+ + A S
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRGFGFILFKDAA----S 53
Query: 247 RQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+K+L+ +LDG DPK + VK ++V + + EKI+E F
Sbjct: 54 VEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGLNPEATEEKIREYFGE 106
Query: 306 HGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
GE+ + +P P + +R F FI + E +K V + + + I G
Sbjct: 107 FGEIEAIELPMDPKSNKRRGFVFITFKEEEP-VKKVLEKKFHTISG 151
Score = 121 (47.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 32/112 (28%), Positives = 58/112 (51%)
Query: 74 DTPHVEE--EEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG 131
D VE+ ++K G K A + P ++F+GGL +A+EE +R+ G
Sbjct: 50 DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFG 108
Query: 132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE-LHSKELKGKTIRCSL 182
++ + L D +S + +GF F++F+ +E KK +++ H+ + G RC L
Sbjct: 109 EIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHT--ISGSK-RCGL 157
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 184 (69.8 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 49/172 (28%), Positives = 89/172 (51%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+D+ + L G+ I + +++ K+ ++F+G + TE++ R+ + G +E IEL
Sbjct: 128 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIEL 185
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
DP+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 186 PMDPKLNKR-RGFVFITFKEEEPV----KKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 140 (54.3 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 49/181 (27%), Positives = 88/181 (48%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI++ DP N R+RG
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 112
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ + A S +K+L+ +LDG DPK + VK ++V +
Sbjct: 113 FGFILFKDAA----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 161
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
+ EKI+E F GE+ + +P P + +R F FI + E +K V + + + +
Sbjct: 162 NPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP-VKKVLEKKFHTVS 220
Query: 349 G 349
G
Sbjct: 221 G 221
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 184 (69.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 49/172 (28%), Positives = 89/172 (51%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+D+ + L G+ I + +++ K+ ++F+G + TE++ R+ + G +E IEL
Sbjct: 128 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIEL 185
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
DP+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 186 PMDPKLNKR-RGFVFITFKEEEPV----KKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 140 (54.3 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 49/181 (27%), Positives = 88/181 (48%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI++ DP N R+RG
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 112
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ + A S +K+L+ +LDG DPK + VK ++V +
Sbjct: 113 FGFILFKDAA----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 161
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
+ EKI+E F GE+ + +P P + +R F FI + E +K V + + + +
Sbjct: 162 NPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP-VKKVLEKKFHTVS 220
Query: 349 G 349
G
Sbjct: 221 G 221
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 186 (70.5 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 55/183 (30%), Positives = 89/183 (48%)
Query: 62 KDQSAEANRNDDDTPHVEEEEK-PTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+D + + NDD EE+ GE E K G ++F+GGL D ++
Sbjct: 9 EDPTMKMEENDDGEGFGEEQMSGDNGGQGEAEGSKIDASKNEEDEG-KMFVGGLSWDTTK 67
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI-- 178
+DL+D G+V + L D +G S+GF FV F+ E +K I + K L GK I
Sbjct: 68 KDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQKEHK-LNGKVIDP 126
Query: 179 -RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ +TK ++F+G + + E++ R+ + G VE+IEL + + R RGF F
Sbjct: 127 KKAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFDAYGE-VESIELPMENKTNKR-RGFCF 184
Query: 235 VLY 237
+ +
Sbjct: 185 ITF 187
Score = 147 (56.8 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 53/184 (28%), Positives = 86/184 (46%)
Query: 172 ELKGKTIRCSLSET-KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRN 229
E +G I S +E + ++F+G + + T+ + + G V+ T++L DP R+
Sbjct: 38 EAEGSKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKL--DPLT-GRS 94
Query: 230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKN 289
RGF FVL+ A+ + + KL+G DPK VK ++V
Sbjct: 95 RGFGFVLFKE---AESVEKVITQKEHKLNGKV-----IDPKKAKAMKTK-EPVKKIFVGG 145
Query: 290 IPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKYEI 347
+ +T EKI+E F +GEV + +P K+ KR F FI + E K ++ +KY
Sbjct: 146 LSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME--KKYHN 203
Query: 348 DGKS 351
G S
Sbjct: 204 IGLS 207
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 28/107 (26%), Positives = 58/107 (54%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
++E K V + +K K A P ++F+GGL D EE +R+ + G+V + L
Sbjct: 114 QKEHKLNGKVIDPKKAK-AMKTKEPVK--KIFVGGLSPDTPEEKIREYFDAYGEVESIEL 170
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
+ ++ + +GF F++F+ +E KK +++ H+ L ++ ++S+
Sbjct: 171 PMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEVKVAMSK 217
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 190 (71.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 60/230 (26%), Positives = 117/230 (50%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++FIG +P++ E+DL+ + E G ++E+ ++KDK +G KG AF+++ ++E A K
Sbjct: 4 PDAIKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIK 63
Query: 164 AIDELH-SKELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A LH S G + I+ ++++ R LF+G + K ++++ RK+ E G G++
Sbjct: 64 AQSALHYSSGYSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFG-GID 122
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWADP---K 270
+++ P S+ G +FV + +++ A S L+ + L G + + + +AD +
Sbjct: 123 ECTVLRGPDGTSK-AGCAFVKFQSHSEAQ-SAINSLHGSRTLPGASSSLVVKFADTEKER 180
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKS 319
SQ+ + N K +EL Q+ V + + P S
Sbjct: 181 GVRRMQQVTSQLGVYTPVTLNFNAYNGKDQELVQQQALVAQAQYLSPAAS 230
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G VFI LP++ ++ ++ + P G+V ++ D+ + +SK F FVSF + A+
Sbjct: 354 PEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQT 413
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L K+
Sbjct: 414 AIQAMNGFQIGMKRLKVQLKRPKD 437
>ZFIN|ZDB-GENE-030828-4 [details] [associations]
symbol:dnd "dead end" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0060047 "heart contraction"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0048255 "mRNA stabilization" evidence=IMP] [GO:0017091 "AU-rich
element binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0060965 "negative regulation of gene
silencing by miRNA" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISS] [GO:0008354 "germ cell migration" evidence=IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0043186 "P granule" evidence=IDA] [GO:0043073 "germ cell
nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030828-4
GO:GO:0007275 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00550000074366 GO:GO:0017091 GO:GO:0048255
GO:GO:0060047 GO:GO:0003730 GO:GO:0007281 GO:GO:0010628
GO:GO:0043186 GO:GO:0043073 GO:GO:0008354 GO:GO:0060965
EMBL:AY225448 EMBL:BC095578 IPI:IPI00500940 RefSeq:NP_997960.1
UniGene:Dr.26907 ProteinModelPortal:Q7T1H5 PRIDE:Q7T1H5
Ensembl:ENSDART00000036463 GeneID:373074 KEGG:dre:373074 CTD:373074
eggNOG:NOG317467 HOGENOM:HOG000112240 HOVERGEN:HBG051370
InParanoid:Q7T1H5 OMA:IANDAIH OrthoDB:EOG4TB4BN NextBio:20813348
Bgee:Q7T1H5 Uniprot:Q7T1H5
Length = 411
Score = 189 (71.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 49/165 (29%), Positives = 85/165 (51%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +G EVFI +P D E+ L L + IG ++E RLM + SG+++GFA+ + A
Sbjct: 56 PGSGCEVFISQIPNDVYEDRLIPLFQSIGTIYEFRLMMNF-SGQTRGFAYAKYGDPLTAS 114
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ LH L +G + S K +L +G++P + E + V++ + GVE + L+K
Sbjct: 115 AAVTTLHQYRLPEGGCLTVRRSTEKRQLRLGDLPVSMNESKLLMVLQMLSDGVEDV-LLK 173
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
P P + V Y ++ A +++ ++ A G + T+ W
Sbjct: 174 PP-GPKGKEVVALVNYTSHYAASMAKKVLVEAFRNRYGISITVRW 217
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 193 (73.0 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 73/283 (25%), Positives = 143/283 (50%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
EKP + +KD+ A+ L L N LP ++++L+++ E D E+RL+
Sbjct: 306 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 350
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKEL-----KGKTI--RCSLSET----KNRLF 190
+ G+SKG A++ F+++ A+K ++E E+ KG++ R + T L
Sbjct: 351 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 409
Query: 191 IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
+ N+ + TE+ ++V E IK PQN + +++G++F+ + A + +++
Sbjct: 410 LSNLSYSATEETLQEVFEKATH-------IKVPQNQNGKSKGYAFIEF---ASFEDAKEA 459
Query: 250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
+ + N + ++G + P+ +P+ A + K L+VK + ++T+ E +KE F G
Sbjct: 460 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFD--GS 515
Query: 309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDG 349
+ ++ ++G + FGF+ + A KA K+ E EIDG
Sbjct: 516 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDG 557
Score = 188 (71.2 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 78/309 (25%), Positives = 140/309 (45%)
Query: 62 KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHA------QLLALPPNGS-EVFIGGL 114
K + + + DDD EEEE P E K K A ++ P S +F+G L
Sbjct: 182 KSTAEDEDEEDDDDDDEEEEEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNL 241
Query: 115 PKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172
+ S +L+ I D+F + D G S+ F +V F S E +KA+ EL +
Sbjct: 242 NFNKSAPELKT---GISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL-ELTGLK 297
Query: 173 LKGKTIRCSLSETKNR--------LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI-KDP 223
+ G I+ + K+ L N+P T+DE ++V ED VE I L+ KD
Sbjct: 298 VFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VE-IRLVSKD- 352
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+++G +++ + A A+ + ++ G D + + S + + K
Sbjct: 353 ---GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQ--DHRGGKN-STWSGESK 406
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
L + N+ + + E ++E+F++ T + +P ++GK + + FI +A A +A+
Sbjct: 407 TLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 463
Query: 343 EKYEIDGKS 351
K EI+G++
Sbjct: 464 NKREIEGRA 472
Score = 167 (63.8 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 54/226 (23%), Positives = 104/226 (46%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKP----TASVGEDEKDKHAQLLALPPNGSEVF 110
SK G S+ E D +EE++ T G+ + + + +
Sbjct: 350 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 409
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
+ L A+EE L+++ E + + ++G+SKG+AF+ F S E AK+A++ +
Sbjct: 410 LSNLSYSATEETLQEVFEKATHI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK 465
Query: 171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+E++G+ IR L + + P K +ED + +++ G ++ D +
Sbjct: 466 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDRE 525
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
S ++GF FV + + A +++ M + ++DGN T+ WA PK
Sbjct: 526 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 568
Score = 38 (18.4 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 66 AEANRNDDDT------PHVEEEEKPTASVGEDEKDK 95
A+A +N D+ P EE+ + EDE D+
Sbjct: 5 AKAGKNQGDSKKMAPPPKEVEEDSEDEEMSEDEDDE 40
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 186 (70.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 50/173 (28%), Positives = 92/173 (53%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K
Sbjct: 67 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 126
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
+D+ + L G+ I + +++ K+ ++F+G + P++ TE++ R+ + G +E IE
Sbjct: 127 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGE-IEAIE 184
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
L DP+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 185 LPMDPKLNKR-RGFVFITFKEEEPV----KKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 143 (55.4 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 50/182 (27%), Positives = 91/182 (50%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI++ DP N R+RG
Sbjct: 55 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 111
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ + A S +K+L+ +LDG DPK + VK ++V +
Sbjct: 112 FGFILFKDAA----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 160
Query: 291 -PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
P++ + EKI+E F GE+ + +P P + +R F FI + E +K V + + + +
Sbjct: 161 NPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP-VKKVLEKKFHTV 219
Query: 348 DG 349
G
Sbjct: 220 SG 221
>UNIPROTKB|E1C0G3 [details] [associations]
symbol:DND1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0060965 "negative
regulation of gene silencing by miRNA" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366 GO:GO:0017091
GO:GO:0060965 EMBL:AADN02063753 IPI:IPI00581277
ProteinModelPortal:E1C0G3 Ensembl:ENSGALT00000009491 OMA:EEIMEEM
Uniprot:E1C0G3
Length = 208
Score = 169 (64.5 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 49/170 (28%), Positives = 84/170 (49%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEV+I LP+D E+ L L + +G ++E RLM SG ++GFA+ + + A
Sbjct: 35 PPPGSEVYIAKLPRDLYEDTLIPLFQSVGQLYEFRLMLTF-SGLNRGFAYAKYSDQHGAG 93
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KAI L++ E++ G+ I S K L + +P E ++ + G+ + L
Sbjct: 94 KAIAALNNWEVQEGRAILVCRSFEKCELSVNGLPATLRRRELDAMLLEATEGLLGLTL-- 151
Query: 222 DPQNPSRNRGFSFVLYYNN-ACADYSRQKMLNANFKLDGNTPTISWADPK 270
+P R +G VL Y++ A +++ ++ N L + W P+
Sbjct: 152 -HASPGRKQGKVAVLTYSSHRAAAMAKKALVEGNVGLFKKKVKVEWLKPE 200
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 192 (72.6 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 66/262 (25%), Positives = 120/262 (45%)
Query: 100 LALPPNGS----EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSF 155
+ PPN + ++IG L D SE L + G V +R+ +D S S G+A+V+F
Sbjct: 46 IGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 105
Query: 156 RSKEFAKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVG 211
+ A++A+D ++ + + G+ +R S+ R GN+ KN K + D
Sbjct: 106 QQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTF 165
Query: 212 PGVETIELIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
I K + N +G+ FV + A + +K+ N D + P+
Sbjct: 166 SLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKV-NGMLLSDKKV-YVGKFQPR 223
Query: 271 STPDHSAAASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFI 327
+ S +K ++VKN ++ EK+ +F + GE+T V+ GK + FGF+
Sbjct: 224 AQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283
Query: 328 HYAERSSALKAVKDTEKYEIDG 349
+A++ +A +AV+ ++G
Sbjct: 284 AFADQDAAGQAVEKLNDSILEG 305
Score = 122 (48.0 bits), Expect = 0.00021, P = 0.00021
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ + +D +++ LRD G + ++M D E+G SKGF FV F E A A+
Sbjct: 342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAV 400
Query: 166 DELHSKELKGKTIRCSLSETK 186
+++SK + K + +L++ K
Sbjct: 401 TDMNSKMIGAKPLYVALAQRK 421
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 184 (69.8 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 47/136 (34%), Positives = 73/136 (53%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++FIGGL D +++DL+D G+V + L D +G S+GF FV F+ E K +D+
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 168 LHSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K L GK I R +TK ++F+G + + E++ R+ G VE+IEL
Sbjct: 106 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPM 163
Query: 222 DPQNPSRNRGFSFVLY 237
D + R RGF F+ +
Sbjct: 164 DNKTNKR-RGFCFITF 178
Score = 147 (56.8 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 57/192 (29%), Positives = 87/192 (45%)
Query: 170 SKELKGKTIRCSLSET-KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPS 227
S E +G I S +E + ++FIG + + T+ + + G V+ T++L DP
Sbjct: 27 SAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DPIT-G 83
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYV 287
R+RGF FVL+ + D + M KL+G DPK VK ++V
Sbjct: 84 RSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFV 134
Query: 288 KNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKY 345
+ +T EKI+E F GEV + +P K+ KR F FI + E K ++ +KY
Sbjct: 135 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKY 192
Query: 346 EIDGKSHLHFPV 357
G S V
Sbjct: 193 HNVGLSKCEIKV 204
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
K A+ + ++F+GGL D EE +R+ G+V + L D ++ + +GF F++
Sbjct: 118 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 177
Query: 155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
F+ +E KK +++ H+ L I+ ++S+
Sbjct: 178 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 208
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 170 (64.9 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 40/132 (30%), Positives = 71/132 (53%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S SEK++S + R +D E+EE S + +K++ + P + +F+G L
Sbjct: 126 SSDSESEKEESNDKKRKSEDAEEEEDEE----SSNKKQKNEETE----EP--ATIFVGRL 175
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
+E L+ E IG V R++ ++ + S+G+ +V F +K +A+KAI E+ KE+
Sbjct: 176 SWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEID 235
Query: 175 GKTIRCSLSETK 186
G+ I C +S +K
Sbjct: 236 GRPINCDMSTSK 247
Score = 114 (45.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 103 PPNGSE-VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
P S+ +F+G L +A + + +L G+V VR+ E+ + KGF +V F + E A
Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321
Query: 162 KKAIDELHSKELKGKTIRCSLSETK 186
KKA+D L + + + +R S +
Sbjct: 322 KKALDALQGEYIDNRPVRLDFSSPR 346
Score = 58 (25.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 21/99 (21%), Positives = 42/99 (42%)
Query: 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNAC 242
SE + LF+GN+ N D ++ G V ++ + P+ + +GF +V + N
Sbjct: 263 SEPSDTLFLGNLSFNADRDAIFELFAKHGE-VVSVRIPTHPET-EQPKGFGYVQFSNMED 320
Query: 243 ADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
A + L + +D + ++ P+ D S+
Sbjct: 321 AKKALDA-LQGEY-IDNRPVRLDFSSPRPNNDGGRGGSR 357
Score = 44 (20.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGEDE 92
++K++S +++ + D+ EEEE+ ++E
Sbjct: 80 TKKEESKDSSSSSSDSSSDEEEEEEKEETKKEE 112
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 182 (69.1 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 49/172 (28%), Positives = 88/172 (51%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + +G SKGF F+ F+ +K
Sbjct: 62 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKV 121
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+D+ + L G+ I + +++ K+ ++F+G + TE++ R+ + G +E IEL
Sbjct: 122 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIEL 179
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
DP+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 180 PMDPKTNKR-RGFVFITFKEEEPV----KKVLEKKFHTISGSKCEIKVAQPK 226
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 48/181 (26%), Positives = 88/181 (48%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI+++ P N R++G
Sbjct: 50 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMV--P-NTGRSKG 106
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ + A S +K+L+ +LDG DPK + VK ++V +
Sbjct: 107 FGFILFKDAA----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 155
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
+ EKI+E F GE+ + +P P + +R F FI + E +K V + + + I
Sbjct: 156 NPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEP-VKKVLEKKFHTIS 214
Query: 349 G 349
G
Sbjct: 215 G 215
Score = 115 (45.5 bits), Expect = 0.00029, P = 0.00029
Identities = 29/116 (25%), Positives = 59/116 (50%)
Query: 74 DTPHVEE--EEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG 131
D VE+ ++K G K A + P ++F+GGL +A+EE +R+ G
Sbjct: 114 DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFG 172
Query: 132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE-LHSKELKGKTIRCSLSETK 186
++ + L D ++ + +GF F++F+ +E KK +++ H+ + G +++ K
Sbjct: 173 EIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHT--ISGSKCEIKVAQPK 226
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 187 (70.9 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 63/250 (25%), Positives = 118/250 (47%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L D +E+ L P G + R+ +D + G+ +V+FR A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 169 HSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ + GK R S+ +RL +GN+ KN + + + + I K
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 139
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS---WADPKSTPDHSAAASQ 281
+ + ++G+++V + + A A+ + M N +L+ + + + ++ + +
Sbjct: 140 DDNGSKGYAYVHFDSLAAANRAIWHM-NG-VRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
++VKNI D+ EK+KELF +G V + SGK + FGF+ Y +A KAV
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVL 257
Query: 341 DTEKYEIDGK 350
D IDGK
Sbjct: 258 DLHGKSIDGK 267
Score = 132 (51.5 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 107 SEVFIGGLPKDASEEDLRDL-CEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ VF+ + D +E L++L CE G V++++D SG+SKGF FV + + E A+KA+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCE-YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256
Query: 166 DELHSKELKGKTIRCSLSETK 186
+LH K + GK + ++ K
Sbjct: 257 LDLHGKSIDGKVLYVGRAQKK 277
Score = 124 (48.7 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 49/198 (24%), Positives = 93/198 (46%)
Query: 172 ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
E + +R T +F+ N+ + +++ +++ + GP E++++I+D S+ G
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDASGKSK--G 240
Query: 232 FSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--STPDHSAAASQVKA---- 284
F FV Y + A ++ +L+ + K +DG + A K + +++
Sbjct: 241 FGFVRYETHEAA---QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297
Query: 285 ------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSAL 336
+Y+KN+ + + EK+KE F G ++ KV+M G+ GK FG + ++ A
Sbjct: 298 RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQ-GK-GFGVVCFSSFEEAT 355
Query: 337 KAVKDTEKYEIDGKSHLH 354
KAV D I G LH
Sbjct: 356 KAV-DEMNGRIVGSKPLH 372
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 36/155 (23%), Positives = 69/155 (44%)
Query: 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
K L++G++ + TED K GP + + +DP S G+ +V + A A++
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSP-LGYGYVNFRFPADAEW 74
Query: 246 SRQKMLNANFKLDGNTP-TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
+ M NF L P + W S PD S V +++KN+ + + LF
Sbjct: 75 ALNTM---NFDLINGKPFRLMW----SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 127
Query: 305 RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
G + + +G + + ++H+ ++A +A+
Sbjct: 128 AFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAI 162
Score = 114 (45.2 bits), Expect = 0.00068, P = 0.00068
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G ++I L + ++E L++ G + ++M E G+ KGF V F S E A K
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATK 356
Query: 164 AIDELHSKELKGKTIRCSLSETKNR 188
A+DE++ + + K + +L + + R
Sbjct: 357 AVDEMNGRIVGSKPLHVTLGQARRR 381
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 168 (64.2 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 47/164 (28%), Positives = 93/164 (56%)
Query: 114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KE 172
+P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A KA LH K
Sbjct: 16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 75
Query: 173 LKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L G + I+ +++++R LF+G + K T+++ RK+ E G ++ +++ P
Sbjct: 76 LPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDGT 134
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
S+ G +FV + +A A + L+++ L G + + + +AD
Sbjct: 135 SK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 175
Score = 119 (46.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K ++ED+R + EP G + E +++ + G SKG AFV F++ A+ AI+
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 155
Query: 168 LHS-KELKG 175
LHS + L G
Sbjct: 156 LHSSRTLPG 164
Score = 118 (46.6 bits), Expect = 0.00034, P = 0.00033
Identities = 25/109 (22%), Positives = 54/109 (49%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
++ P + ++ + Q P+G +FI LP++ ++ ++ + P G V ++
Sbjct: 353 QQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKV 412
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
D+ + +SK F FVSF + A+ AI ++ ++ K ++ L K+
Sbjct: 413 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 461
Score = 62 (26.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + +I ++F G V KV + + + FGF+ + +SA A++
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 442
Query: 343 EKYEIDGK 350
++I K
Sbjct: 443 NGFQIGMK 450
Score = 52 (23.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+FI ++P+ +T+ E ++ G + + N S+ F FV + N A A + Q
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKC--FGFVSFDNPASAQAAIQ 440
Query: 249 KM 250
M
Sbjct: 441 AM 442
>UNIPROTKB|E1BIG5 [details] [associations]
symbol:DND1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060965 "negative regulation of gene silencing by
miRNA" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366 GO:GO:0017091
GO:GO:0007281 GO:GO:0060965 CTD:373863 OMA:KRECELW
EMBL:DAAA02020432 IPI:IPI00711336 RefSeq:NP_001180074.1
UniGene:Bt.87604 ProteinModelPortal:E1BIG5
Ensembl:ENSBTAT00000025092 GeneID:525516 KEGG:bta:525516
NextBio:20874184 Uniprot:E1BIG5
Length = 355
Score = 186 (70.5 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 48/169 (28%), Positives = 86/169 (50%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTF-SGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P + + ++ +GPG++ L+
Sbjct: 113 AAIATLHNHLLRPSCPLLVCRSTE-KCELSVDGLPPGLSHRALLRALQPLGPGLQEALLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPTPAQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 179 (68.1 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 48/169 (28%), Positives = 88/169 (52%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K +++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 168 LHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+ L G+ I + +++ K+ ++F+G + TE++ R+ + G +E IEL D
Sbjct: 61 KEHR-LDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 118
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANF-KLDGNTPTISWADPK 270
P+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 119 PKTNKR-RGFVFITFKEEDPV----KKVLEKKFHNVSGSKCEIKVAQPK 162
Score = 125 (49.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 43/166 (25%), Positives = 78/166 (46%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
++F+G + + ++ + + G + TI++ DP N R+RGF F+L+ S
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKM--DP-NTGRSRGFGFILFKEPG----S 53
Query: 247 RQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+K+L +LDG DPK + VK ++V + + EKI+E F
Sbjct: 54 VEKVLEQKEHRLDGRL-----IDPKKAM--AMKKDPVKKIFVGGLNPEATEEKIREYFGE 106
Query: 306 HGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
GE+ + +P P + +R F FI + E +K V + + + + G
Sbjct: 107 FGEIEAIELPMDPKTNKRRGFVFITFKEEDP-VKKVLEKKFHNVSG 151
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 186 (70.5 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 62/250 (24%), Positives = 118/250 (47%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L D +E+ L P G + R+ +D + G+ +V+FR A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 169 HSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ + GK R S+ +RL IGN+ KN + + + + +I K
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVC 139
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS---WADPKSTPDHSAAASQ 281
+ + ++G+++V + + A A+ + M N +L+ + + + ++ + +
Sbjct: 140 DDNGSKGYAYVHFDSLAAANRAIWHM-NG-VRLNNRQVYVGRFKFPEERAAEVRTRDKAT 197
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
++VKN D+ +K+KELF +G V + SGK + FGF+ Y +A KAV
Sbjct: 198 FTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVL 257
Query: 341 DTEKYEIDGK 350
D IDGK
Sbjct: 258 DLHGKSIDGK 267
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VF+ D ++ L++L G V++++D SG+SKGF FV + + E A+KA+
Sbjct: 199 TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVL 257
Query: 167 ELHSKELKGKTIRCSLSETK 186
+LH K + GK + ++ K
Sbjct: 258 DLHGKSIDGKVLYVGRAQKK 277
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 44/185 (23%), Positives = 89/185 (48%)
Query: 172 ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
E + +R T +F+ N + +D+ +++ + GP E++++I+D + +++G
Sbjct: 184 EERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGP-TESVKVIRD--SSGKSKG 240
Query: 232 FSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--STPDHSAAASQVKA---- 284
F FV Y + A ++ +L+ + K +DG + A K + +++
Sbjct: 241 FGFVRYETHEAA---QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297
Query: 285 ------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSAL 336
+Y+KN+ + EK+KE F G ++ KV++ G+ GK FG I ++ A
Sbjct: 298 RPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQ-GK-GFGVICFSSFEEAT 355
Query: 337 KAVKD 341
KAV +
Sbjct: 356 KAVDE 360
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 35/155 (22%), Positives = 69/155 (44%)
Query: 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
K L++G++ + TED K GP + + +DP S G+ +V + A A++
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSP-LGYGYVNFRFPADAEW 74
Query: 246 SRQKMLNANFKLDGNTP-TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
+ M NF L P + W S PD S + +++KN+ + + LF
Sbjct: 75 ALNTM---NFDLINGKPFRLMW----SQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFS 127
Query: 305 RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
G + + +G + + ++H+ ++A +A+
Sbjct: 128 AFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAI 162
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 184 (69.8 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 49/172 (28%), Positives = 89/172 (51%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+D+ + L G+ I + +++ K+ ++F+G + TE++ R+ + G +E IEL
Sbjct: 128 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIEL 185
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
DP+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 186 PMDPKLNKR-RGFVFITFKEEEPV----KKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 140 (54.3 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 49/181 (27%), Positives = 88/181 (48%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI++ DP N R+RG
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 112
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ + A S +K+L+ +LDG DPK + VK ++V +
Sbjct: 113 FGFILFKDAA----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 161
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
+ EKI+E F GE+ + +P P + +R F FI + E +K V + + + +
Sbjct: 162 NPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP-VKKVLEKKFHTVS 220
Query: 349 G 349
G
Sbjct: 221 G 221
>RGD|1583648 [details] [associations]
symbol:Dnd1 "dead end homolog 1 (zebrafish)" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0017091 "AU-rich element binding"
evidence=IEA;ISO] [GO:0060965 "negative regulation of gene
silencing by miRNA" evidence=IEA;ISO] [GO:0035198 "miRNA binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1583648 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366 GO:GO:0003676
OrthoDB:EOG4TB4BN CTD:373863 OMA:KRECELW EMBL:CH473974
IPI:IPI00358331 RefSeq:NP_001102849.1 UniGene:Rn.160920
Ensembl:ENSRNOT00000022685 GeneID:679841 KEGG:rno:679841
UCSC:RGD:1583648 NextBio:717377 Uniprot:D3ZQ06
Length = 352
Score = 185 (70.2 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 48/170 (28%), Positives = 88/170 (51%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP+GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPSGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTF-SGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKG--KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ +L+ + + C +E K L + +P + ++ +GP ++ L+
Sbjct: 113 AAIATLHNHQLRPSCQLLVCRSTE-KCELTVDGLPLSLNRRALLLALQPLGPCLQETLLL 171
Query: 221 KDPQN-PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P + PS+ + + + + A +++ ++ +L G + W P
Sbjct: 172 PSPGSAPSQ---IALLKFSTHRAAAMAKKALVEGQSRLCGEQVAVEWLKP 218
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 190 (71.9 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 69/259 (26%), Positives = 122/259 (47%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + L GK +R S+ R GN+ KN + K I D I K
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKV 151
Query: 223 P-QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
++G+ FV + A + QK+ N L G + P++ + A
Sbjct: 152 AIDEDGFSKGYGFVHFETEEAAQNAIQKV-NGML-LAGKKVFVGKFQPRAQRNRELGETA 209
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYA---ERSS 334
Q +YVKN D+ + E +++LF + G +T +V+ GKS + FGF+ +A E +
Sbjct: 210 KQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKS--KGFGFVAFANPEEAET 267
Query: 335 ALKAVKDTEKYEIDGKSHL 353
A++A+ D+ D K H+
Sbjct: 268 AVQALHDSTIEGTDLKLHV 286
Score = 119 (46.9 bits), Expect = 0.00041, P = 0.00041
Identities = 33/113 (29%), Positives = 57/113 (50%)
Query: 77 HVEEEEKPTASVGEDEKDKHAQLLA---LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDV 133
HV +K + E +K KH Q A G +++ L + ++ L+ E G++
Sbjct: 285 HVCRAQKKSERHAELKK-KHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNI 343
Query: 134 FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
++M D E+G SKGF FV F E A A+ E++SK + K + ++++ K
Sbjct: 344 TSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRK 395
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 174 (66.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 142 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 200
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 201 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 237
Score = 123 (48.4 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 33/124 (26%), Positives = 59/124 (47%)
Query: 229 NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQVKALYV 287
++G+ FV + A+ + +KM N D + K + A A + +Y+
Sbjct: 105 SKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 163
Query: 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE 346
KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV + E
Sbjct: 164 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 223
Query: 347 IDGK 350
++GK
Sbjct: 224 LNGK 227
Score = 115 (45.5 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSE 184
++ +KGK +R S+
Sbjct: 71 TMNFDVIKGKPVRIMWSQ 88
Score = 108 (43.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 45/194 (23%), Positives = 87/194 (44%)
Query: 162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K + S++ + + E N ++I N ++ ++ + + GP + +++++
Sbjct: 135 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKDLFGKFGPAL-SVKVMT 192
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
D S+ GF FV + + A + +M N +L+G + A K +
Sbjct: 193 DESGKSK--GFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKF 248
Query: 280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
Q+K LYVKN+ D E++++ F G +T KV+M G+S + FGF+
Sbjct: 249 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS--KGFGFV 306
Query: 328 HYAERSSALKAVKD 341
++ A KAV +
Sbjct: 307 CFSSPEEATKAVTE 320
Score = 51 (23.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 304 QRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
QR + K + ++G + +GF+H+ + +A +A++
Sbjct: 88 QRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIE 124
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 181 (68.8 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 49/172 (28%), Positives = 88/172 (51%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K
Sbjct: 73 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKV 132
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+D+ + L G+ I + +++ K+ ++F+G + TE++ R+ G +E IEL
Sbjct: 133 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGE-IEAIEL 190
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
DP+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 191 PIDPKLNKR-RGFVFITFKEEDPV----KKVLEKKFHTVSGSKCEIKVAQPK 237
Score = 141 (54.7 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 48/181 (26%), Positives = 90/181 (49%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI++ DP N R+RG
Sbjct: 61 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 117
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ +++ S +K+L+ +LDG DPK + VK ++V +
Sbjct: 118 FGFILFKDSS----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 166
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
+ EKI+E F + GE+ + +P P + +R F FI + E +K V + + + +
Sbjct: 167 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP-VKKVLEKKFHTVS 225
Query: 349 G 349
G
Sbjct: 226 G 226
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 181 (68.8 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 49/172 (28%), Positives = 88/172 (51%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K
Sbjct: 73 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKV 132
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+D+ + L G+ I + +++ K+ ++F+G + TE++ R+ G +E IEL
Sbjct: 133 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGE-IEAIEL 190
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
DP+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 191 PIDPKLNKR-RGFVFITFKEEDPV----KKVLEKKFHTVSGSKCEIKVAQPK 237
Score = 141 (54.7 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 48/181 (26%), Positives = 90/181 (49%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI++ DP N R+RG
Sbjct: 61 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 117
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ +++ S +K+L+ +LDG DPK + VK ++V +
Sbjct: 118 FGFILFKDSS----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 166
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
+ EKI+E F + GE+ + +P P + +R F FI + E +K V + + + +
Sbjct: 167 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP-VKKVLEKKFHTVS 225
Query: 349 G 349
G
Sbjct: 226 G 226
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 166 (63.5 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 47/165 (28%), Positives = 93/165 (56%)
Query: 114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KE 172
+P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A KA LH K
Sbjct: 15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 74
Query: 173 LKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L G + I+ +++++R LF+G + K T+++ RK+ E G ++ +++ P
Sbjct: 75 LPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDG 133
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
S+ G +FV + +A A + L+++ L G + + + +AD
Sbjct: 134 TSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 175
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 26/110 (23%), Positives = 55/110 (50%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
V ++ P + ++ + Q P+G +FI LP++ ++ ++ + P G V +
Sbjct: 351 VAQQPPPPPQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAK 410
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
+ D+ + +SK F FVSF + A+ AI ++ ++ K ++ L K+
Sbjct: 411 VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 460
Score = 119 (46.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K ++ED+R + EP G + E +++ + G SKG AFV F++ A+ AI+
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 155
Query: 168 LHS-KELKG 175
LHS + L G
Sbjct: 156 LHSSRTLPG 164
Score = 62 (26.9 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + +I ++F G V KV + + + FGF+ + +SA A++
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 343 EKYEIDGK 350
++I K
Sbjct: 442 NGFQIGMK 449
Score = 52 (23.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+FI ++P+ +T+ E ++ G + + N S+ F FV + N A A + Q
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKC--FGFVSFDNPASAQAAIQ 439
Query: 249 KM 250
M
Sbjct: 440 AM 441
>UNIPROTKB|F1RGE0 [details] [associations]
symbol:DND1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060965 "negative regulation of gene silencing by
miRNA" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366 GO:GO:0017091
GO:GO:0007281 GO:GO:0060965 CTD:373863 OMA:KRECELW EMBL:CU459055
RefSeq:XP_003124091.1 UniGene:Ssc.54455 Ensembl:ENSSSCT00000015704
GeneID:100520423 KEGG:ssc:100520423 Uniprot:F1RGE0
Length = 353
Score = 184 (69.8 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 48/169 (28%), Positives = 85/169 (50%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTF-SGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P + ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPGLSRRALLLALQPLGPGLQEALLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPAQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>ZFIN|ZDB-GENE-060929-244 [details] [associations]
symbol:rbms3 "RNA binding motif, single stranded
interacting protein" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060929-244
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:CR626944 EMBL:CR848052
EMBL:CR848810 IPI:IPI00920287 Ensembl:ENSDART00000125804
Ensembl:ENSDART00000136719 Uniprot:F1QEI2
Length = 415
Score = 175 (66.7 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 36/127 (28%), Positives = 68/127 (53%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++I GLP +++DL LC+P G + + + DK + + KG+ FV F S A+KA+
Sbjct: 56 TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 115
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L + ++ + + + N L+I N+P + E E +++ G + T +++D
Sbjct: 116 SLKASGVQAQMAKQQEQDPTN-LYISNLPVSMDEQELENMLKPFGHVIST-RILRDANGV 173
Query: 227 SRNRGFS 233
SR GF+
Sbjct: 174 SRGVGFA 180
Score = 49 (22.3 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 267 ADPKSTPDHSAAAS-QVKALYVKNIPDNTST 296
A P+S P S AS Q +AL V+N D+ T
Sbjct: 378 ASPQSVPASSQDASGQQQALGVENTSDHAPT 408
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 167 (63.8 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 57/232 (24%), Positives = 103/232 (44%)
Query: 69 NRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCE 128
N N+++ + + + + + L L + + VF+ LP + ++EDL +L
Sbjct: 71 NNNNNNNNNNNNNNNNNNNNNNNNNSVNNKELELERDQTNVFVKHLPYEFNDEDLENLFS 130
Query: 129 PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--- 185
G V ++M D + G S G+ FV F S + + AI+EL + + K + C LS
Sbjct: 131 KYGKVLSSKVMIDPK-GNSYGYGFVRFSSPQESAAAIEELDGYQYQNKKLLCRLSNLYTN 189
Query: 186 ------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239
N LFI +P + T+D+ RK+ E G +E +++ D S+ GF V + +
Sbjct: 190 LNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIEC-KVMLDHNGQSKFAGF--VRFSS 246
Query: 240 NACADYSRQKMLNANFKLDGNTP-TISWADPKSTPDHSAAASQVKALYVKNI 290
A + M D P + +AD + S +++ +Y + I
Sbjct: 247 ELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQKI-SRKQRKMQTIYQEKI 297
Score = 69 (29.3 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 17/68 (25%), Positives = 35/68 (51%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
L+V ++P + +LF + G++ V V+ +G+ + +GF+ + + ALK K+
Sbjct: 771 LFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEM 830
Query: 343 EKYEIDGK 350
+ I K
Sbjct: 831 NGFRIGSK 838
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 181 (68.8 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 49/172 (28%), Positives = 88/172 (51%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K
Sbjct: 86 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKV 145
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+D+ + L G+ I + +++ K+ ++F+G + TE++ R+ G +E IEL
Sbjct: 146 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGE-IEAIEL 203
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
DP+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 204 PIDPKLNKR-RGFVFITFKEEDPV----KKVLEKKFHTVSGSKCEIKVAQPK 250
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 48/181 (26%), Positives = 90/181 (49%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI++ DP N R+RG
Sbjct: 74 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 130
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ +++ S +K+L+ +LDG DPK + VK ++V +
Sbjct: 131 FGFILFKDSS----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 179
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
+ EKI+E F + GE+ + +P P + +R F FI + E +K V + + + +
Sbjct: 180 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP-VKKVLEKKFHTVS 238
Query: 349 G 349
G
Sbjct: 239 G 239
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 155 (59.6 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 53/186 (28%), Positives = 83/186 (44%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLC-EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PN + VFI +P D + ++DL E +G+V V L KD E G+S+G V F+ +EF K
Sbjct: 34 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVK 92
Query: 163 KAIDELHSKELKGKTI-----------RCSLSETKNRL----FIGNVPKNWTEDEFRKVI 207
KA++ ++ +L G+ + R +L T RL F+ N+ + ++V
Sbjct: 93 KALETMNKYDLSGRPLNIKEDPDGENARRALQRTAGRLGSTIFVANLDFKVGWKKLKEVF 152
Query: 208 EDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267
G V+ ++ +D SR G + + A M N F D P
Sbjct: 153 SIAGT-VKRADIKEDKDGKSRGMG---TVTFEQAIEAVQAISMFNGQFLFD--RPMHVKM 206
Query: 268 DPKSTP 273
D KS P
Sbjct: 207 DDKSVP 212
Score = 77 (32.2 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALK 337
S+ ++V+N+P + + +K+KE F + G V ++ M GKS + G + + SA K
Sbjct: 531 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKS--KGCGTVRFDSPESAEK 588
Query: 338 AVKDTEKYEIDGK 350
A + +I G+
Sbjct: 589 ACRIMNGIKISGR 601
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 166 (63.5 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 47/165 (28%), Positives = 93/165 (56%)
Query: 114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KE 172
+P+ E+DL+ + E G +FE+ ++KDK +G KG AF+++ +++ A KA LH K
Sbjct: 91 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 150
Query: 173 LKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L G + I+ +++++R LF+G + K T+++ RK+ E G ++ +++ P
Sbjct: 151 LPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDG 209
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
S+ G +FV + +A A + L+++ L G + + + +AD
Sbjct: 210 TSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 251
Score = 119 (46.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K ++ED+R + EP G + E +++ + G SKG AFV F++ A+ AI+
Sbjct: 173 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 231
Query: 168 LHS-KELKG 175
LHS + L G
Sbjct: 232 LHSSRTLPG 240
Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
Identities = 25/106 (23%), Positives = 54/106 (50%)
Query: 82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
++P + ++ + Q P+G +FI LP++ ++ ++ + P G V ++ D
Sbjct: 429 QQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVD 488
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
+ + +SK F FVSF + A+ AI ++ ++ K ++ L K+
Sbjct: 489 RATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 534
Score = 62 (26.9 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
+++ ++P + +I ++F G V KV + + + FGF+ + +SA A++
Sbjct: 456 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 515
Query: 343 EKYEIDGK 350
++I K
Sbjct: 516 NGFQIGMK 523
Score = 52 (23.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+FI ++P+ +T+ E ++ G + + N S+ F FV + N A A + Q
Sbjct: 456 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKC--FGFVSFDNPASAQAAIQ 513
Query: 249 KM 250
M
Sbjct: 514 AM 515
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 166 (63.5 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 42/151 (27%), Positives = 84/151 (55%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+ E+DL+ L E G ++E+ ++KD+ +G KG AF+++ +++ A KA
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106
Query: 168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G ++ + SE + +LF+G + K E++ R++ + G +E +
Sbjct: 107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH-IEECTV 165
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
++ P S+ G +FV + + A + Q +
Sbjct: 166 LRSPDGTSK--GCAFVKFGSQGEAQAAIQSL 194
Score = 119 (46.9 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K EED+R L +P G + E +++ + G SKG AFV F S+ A+ AI
Sbjct: 135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQS 193
Query: 168 LH-SKELKG 175
LH S+ + G
Sbjct: 194 LHGSRTMAG 202
Score = 60 (26.2 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 17/84 (20%), Positives = 36/84 (42%)
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
P + P + L++ ++P ++ + F G V KV + + + FGF
Sbjct: 383 PSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGF 442
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+ + +SA A++ ++I K
Sbjct: 443 VSFDNPTSAQTAIQAMNGFQIGMK 466
Score = 40 (19.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
LFI ++P+ + + E + G V + N S+ F FV + N A + Q
Sbjct: 399 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC--FGFVSFDNPTSAQTAIQ 456
Query: 249 KM 250
M
Sbjct: 457 AM 458
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 166 (63.5 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 42/151 (27%), Positives = 84/151 (55%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+ E+DL+ L E G ++E+ ++KD+ +G KG AF+++ +++ A KA
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106
Query: 168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G ++ + SE + +LF+G + K E++ R++ + G +E +
Sbjct: 107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH-IEECTV 165
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
++ P S+ G +FV + + A + Q +
Sbjct: 166 LRSPDGTSK--GCAFVKFGSQGEAQAAIQSL 194
Score = 119 (46.9 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K EED+R L +P G + E +++ + G SKG AFV F S+ A+ AI
Sbjct: 135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQS 193
Query: 168 LH-SKELKG 175
LH S+ + G
Sbjct: 194 LHGSRTMAG 202
Score = 60 (26.2 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 17/84 (20%), Positives = 36/84 (42%)
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
P + P + L++ ++P ++ + F G V KV + + + FGF
Sbjct: 383 PSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGF 442
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+ + +SA A++ ++I K
Sbjct: 443 VSFDNPTSAQTAIQAMNGFQIGMK 466
Score = 40 (19.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
LFI ++P+ + + E + G V + N S+ F FV + N A + Q
Sbjct: 399 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC--FGFVSFDNPTSAQTAIQ 456
Query: 249 KM 250
M
Sbjct: 457 AM 458
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 181 (68.8 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 49/172 (28%), Positives = 88/172 (51%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K
Sbjct: 72 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKV 131
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+D+ + L G+ I + +++ K+ ++F+G + TE++ R+ G +E IEL
Sbjct: 132 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGE-IEAIEL 189
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
DP+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 190 PIDPKLNKR-RGFVFITFKEEDPV----KKVLEKKFHTVSGSKCEIKVAQPK 236
Score = 141 (54.7 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 48/181 (26%), Positives = 90/181 (49%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI++ DP N R+RG
Sbjct: 60 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 116
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ +++ S +K+L+ +LDG DPK + VK ++V +
Sbjct: 117 FGFILFKDSS----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 165
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
+ EKI+E F + GE+ + +P P + +R F FI + E +K V + + + +
Sbjct: 166 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP-VKKVLEKKFHTVS 224
Query: 349 G 349
G
Sbjct: 225 G 225
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 181 (68.8 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 49/172 (28%), Positives = 88/172 (51%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ ++F+GGL D S++DL+D G+V + + D +G S+GF F+ F+ +K
Sbjct: 73 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKV 132
Query: 165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
+D+ + L G+ I + +++ K+ ++F+G + TE++ R+ G +E IEL
Sbjct: 133 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGE-IEAIEL 190
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
DP+ R RGF F+ + +K+L F + G+ I A PK
Sbjct: 191 PIDPKLNKR-RGFVFITFKEEDPV----KKVLEKKFHTVSGSKCEIKVAQPK 237
Score = 141 (54.7 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 48/181 (26%), Positives = 90/181 (49%)
Query: 174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
+G I S +E ++F+G + + ++ + + G V+ TI++ DP N R+RG
Sbjct: 61 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 117
Query: 232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
F F+L+ +++ S +K+L+ +LDG DPK + VK ++V +
Sbjct: 118 FGFILFKDSS----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 166
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
+ EKI+E F + GE+ + +P P + +R F FI + E +K V + + + +
Sbjct: 167 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP-VKKVLEKKFHTVS 225
Query: 349 G 349
G
Sbjct: 226 G 226
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 182 (69.1 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 58 GASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALP--PNGSEVFIGGLP 115
GA + DQ N D + + G+D D Q+ A + ++F+GGL
Sbjct: 50 GAGQYDQG-----NGDAQAGAQGNAGADGTAGDDGADG-GQIDASKGEEDAGKMFVGGLS 103
Query: 116 KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE----LHSK 171
D S++DL+D G+V + + D +G S+GF F+ F+ K + + L +
Sbjct: 104 WDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQKEHRLDGR 163
Query: 172 ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
++ K E ++F+G + TE+ R+ G +ETIEL DP++ R RG
Sbjct: 164 QIDPKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGE-IETIELPMDPKSNKR-RG 221
Query: 232 FSFVLY 237
F F+ +
Sbjct: 222 FVFITF 227
Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 42/169 (24%), Positives = 80/169 (47%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNAC 242
E ++F+G + + ++ + + G + TI++ DP N R+RGF F+L+ +
Sbjct: 92 EDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKM--DP-NTGRSRGFGFILFKEPSG 148
Query: 243 ADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302
D + + +LDG DPK + VK ++V + T+ E+I+E
Sbjct: 149 VD---KVLAQKEHRLDGRQ-----IDPKKAM--AMKKEPVKKIFVGGLNPETTEERIREY 198
Query: 303 FQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
F GE+ + +P P + +R F FI + E A+K + + + + + G
Sbjct: 199 FGAFGEIETIELPMDPKSNKRRGFVFITFKEEE-AVKKILEKKYHNVSG 246
Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
Identities = 26/99 (26%), Positives = 51/99 (51%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
G K A + P ++F+GGL + +EE +R+ G++ + L D +S + +
Sbjct: 162 GRQIDPKKAMAMKKEPV-KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRR 220
Query: 149 GFAFVSFRSKEFAKKAIDELH-----SKELKGKTIRCSL 182
GF F++F+ +E KK +++ + +K+ GK C +
Sbjct: 221 GFVFITFKEEEAVKKILEKKYHNVSGTKDTSGKEGLCEI 259
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 176 (67.0 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 40/158 (25%), Positives = 78/158 (49%)
Query: 76 PHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE 135
PH P+ + + ++ L + + ++I GLP +++DL LC+P G +
Sbjct: 32 PHPMAPPSPSTNSSSNNSSNNSSGEQL--SKTNLYIRGLPPGTTDQDLIKLCQPYGKIVS 89
Query: 136 VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVP 195
+ + DK + + KG+ FV F S A+KA+ L + ++ + + + N L+I N+P
Sbjct: 90 TKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTN-LYISNLP 148
Query: 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFS 233
+ E E +++ G + T +++D SR GF+
Sbjct: 149 ISMDEQELENMLKPFGHVIST-RILRDANGVSRGVGFA 185
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 165 (63.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 40/138 (28%), Positives = 79/138 (57%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+ E+DL+ L E G ++E+ ++KD+ +G KG AF+++ +++ A KA
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106
Query: 168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G ++ + SE + +LF+G + K E++ R++ + G +E +
Sbjct: 107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH-IEECTV 165
Query: 220 IKDPQNPSRNRGFSFVLY 237
++ P S+ G +FV +
Sbjct: 166 LRSPDGTSK--GCAFVKF 181
Score = 117 (46.2 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K EED+R L +P G + E +++ + G SKG AFV F S+ A+ AI
Sbjct: 135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQG 193
Query: 168 LH-SKELKG 175
LH S+ + G
Sbjct: 194 LHGSRTMTG 202
Score = 60 (26.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 17/84 (20%), Positives = 36/84 (42%)
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
P + P + L++ ++P ++ + F G V KV + + + FGF
Sbjct: 361 PSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGF 420
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+ + +SA A++ ++I K
Sbjct: 421 VSFDNPTSAQTAIQAMNGFQIGMK 444
Score = 40 (19.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
LFI ++P+ + + E + G V + N S+ F FV + N A + Q
Sbjct: 377 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC--FGFVSFDNPTSAQTAIQ 434
Query: 249 KM 250
M
Sbjct: 435 AM 436
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 165 (63.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 40/138 (28%), Positives = 79/138 (57%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+ E+DL+ L E G ++E+ ++KD+ +G KG AF+++ +++ A KA
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106
Query: 168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G ++ + SE + +LF+G + K E++ R++ + G +E +
Sbjct: 107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH-IEECTV 165
Query: 220 IKDPQNPSRNRGFSFVLY 237
++ P S+ G +FV +
Sbjct: 166 LRSPDGTSK--GCAFVKF 181
Score = 117 (46.2 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K EED+R L +P G + E +++ + G SKG AFV F S+ A+ AI
Sbjct: 135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQG 193
Query: 168 LH-SKELKG 175
LH S+ + G
Sbjct: 194 LHGSRTMTG 202
Score = 60 (26.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 17/84 (20%), Positives = 36/84 (42%)
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
P + P + L++ ++P ++ + F G V KV + + + FGF
Sbjct: 361 PSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGF 420
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+ + +SA A++ ++I K
Sbjct: 421 VSFDNPTSAQTAIQAMNGFQIGMK 444
Score = 40 (19.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
LFI ++P+ + + E + G V + N S+ F FV + N A + Q
Sbjct: 377 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC--FGFVSFDNPTSAQTAIQ 434
Query: 249 KM 250
M
Sbjct: 435 AM 436
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 190 (71.9 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 77/301 (25%), Positives = 132/301 (43%)
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN--GSEVFIGGLPKDA 118
E QS + R D+ T + PT D A+ +AL + S V + LP+
Sbjct: 785 EASQSEKRKREDESTAN----GLPTKRARADRASVEAEPVALRRDRENSTVVVKNLPQGT 840
Query: 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
+E +R G + V++M E G+S+ A + F +++ A A K G TI
Sbjct: 841 TEHKVRQFFRDCGAINGVKMMPG-EDGKSE-VAMIEFNTRDDAAAA-QTRDQKTFDGNTI 897
Query: 179 RCSL-SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+ SET LF+ N P E+ R + G E I++ + +R F + L
Sbjct: 898 QVHFGSETT--LFVTNFPPTADENYIRDLFSKYG---EIIDIRFPSLKYNTHRRFCY-LQ 951
Query: 238 YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTE 297
+ + A +S L+ + +G + +DP D + + + ++V N+ + S +
Sbjct: 952 FKTSVAAHSALA-LDGSAVGNGLHLVVKISDPSRKQDRNGPIYEGREIHVSNVNWSASED 1010
Query: 298 KIKELFQRHGEVTKVVMPPG-KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356
+KELF R G V V +P G + FG++ ++ + A A+ E+ E G+ LH
Sbjct: 1011 DLKELFSRFGTVELVRLPRKVDGGSKGFGYVVFSSKEEATAALAMHEQ-EFRGRP-LHVK 1068
Query: 357 V 357
V
Sbjct: 1069 V 1069
>UNIPROTKB|F1NEX8 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:AADN02020000 IPI:IPI00596036 ProteinModelPortal:F1NEX8
Ensembl:ENSGALT00000014983 Uniprot:F1NEX8
Length = 502
Score = 172 (65.6 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 47/156 (30%), Positives = 84/156 (53%)
Query: 97 AQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFR 156
A+ L PPN S VF+ L KDA E +R+ P GD+ + L++DK + ES+G AF+ F
Sbjct: 45 AECLDEPPN-SRVFVV-LGKDAGEALIRERFAPFGDIQNIWLLRDKRTNESRGIAFIKFA 102
Query: 157 SKEFAKKAIDELHSKEL--KGKTIRCSLSETK-------------NRLFIGNVPKNWTED 201
A +A++E+H + L K I+ +++++ R+F+ +PK +TE+
Sbjct: 103 RSSQACRAMEEMHGRSLVPDTKPIKVFIAQSRASGSHRDVEDEELTRIFV-MIPKTYTEE 161
Query: 202 EFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+ R+ + G +E +IK+ + ++G +V Y
Sbjct: 162 DLREKFKMYGD-IEYCSIIKN-KTTGESKGLGYVRY 195
Score = 111 (44.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +F+ +PK +EEDLR+ + GD+ ++K+K +GESKG +V + A +AI+
Sbjct: 148 TRIFVM-IPKTYTEEDLREKFKMYGDIEYCSIIKNKTTGESKGLGYVRYLKPSQAARAIE 206
Query: 167 ELHSKELKGKTIRCSLSETKNR 188
E ++ R L+E KN+
Sbjct: 207 ECD------RSYRAILAEPKNK 222
Score = 53 (23.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
L+V P ++++F R G + KV + GK+ + +A+R+SA +A+
Sbjct: 420 LFVLFHPHPLPVTILEDVFCRFGNLIKVYLVAGKN----VAYAKFADRASASEAI 470
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 180 (68.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 52/177 (29%), Positives = 87/177 (49%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
+ P +G+++FIGGL D S++DL + G+V + + D +G S+GF FV F+
Sbjct: 45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104
Query: 161 AKKAIDELHSKELKGKTI---RCSL---SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
K + EL +L GK I R E ++F+G + + +E++ ++ G +
Sbjct: 105 VDKVL-ELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE-I 162
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPK 270
E IEL D + R RGF F+ Y + +K+L + + G+ I A PK
Sbjct: 163 ENIELPMDTKTNER-RGFCFITYTDEEPV----KKLLESRYHQIGSGKCEIKVAQPK 214
Score = 133 (51.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 51/178 (28%), Positives = 85/178 (47%)
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYN 239
S + N++FIG + + ++ + + + G V+ TI+ DP R+RGF FVL+ +
Sbjct: 45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT--DPVT-GRSRGFGFVLFKD 101
Query: 240 NACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
A D K+L KLDG DPK K ++V + +TS E+
Sbjct: 102 AASVD----KVLELKEHKLDGKL-----IDPKRAKALKGKEPP-KKVFVGGLSPDTSEEQ 151
Query: 299 IKELFQRHGEVTKVVMPPG-KSG-KRDFGFIHYAERSSALKAVKDTEKYEI-DGKSHL 353
IKE F GE+ + +P K+ +R F FI Y + +K + ++ ++I GK +
Sbjct: 152 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP-VKKLLESRYHQIGSGKCEI 208
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 180 (68.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 52/177 (29%), Positives = 87/177 (49%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
+ P +G+++FIGGL D S++DL + G+V + + D +G S+GF FV F+
Sbjct: 45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104
Query: 161 AKKAIDELHSKELKGKTI---RCSL---SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
K + EL +L GK I R E ++F+G + + +E++ ++ G +
Sbjct: 105 VDKVL-ELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE-I 162
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPK 270
E IEL D + R RGF F+ Y + +K+L + + G+ I A PK
Sbjct: 163 ENIELPMDTKTNER-RGFCFITYTDEEPV----KKLLESRYHQIGSGKCEIKVAQPK 214
Score = 133 (51.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 51/178 (28%), Positives = 85/178 (47%)
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYN 239
S + N++FIG + + ++ + + + G V+ TI+ DP R+RGF FVL+ +
Sbjct: 45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT--DPVT-GRSRGFGFVLFKD 101
Query: 240 NACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
A D K+L KLDG DPK K ++V + +TS E+
Sbjct: 102 AASVD----KVLELKEHKLDGKL-----IDPKRAKALKGKEPP-KKVFVGGLSPDTSEEQ 151
Query: 299 IKELFQRHGEVTKVVMPPG-KSG-KRDFGFIHYAERSSALKAVKDTEKYEI-DGKSHL 353
IKE F GE+ + +P K+ +R F FI Y + +K + ++ ++I GK +
Sbjct: 152 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP-VKKLLESRYHQIGSGKCEI 208
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 165 (63.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 40/138 (28%), Positives = 79/138 (57%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+ E+DL+ L E G ++E+ ++KD+ +G KG AF+++ +++ A KA
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106
Query: 168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
LH K L G ++ + SE + +LF+G + K E++ R++ + G +E +
Sbjct: 107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH-IEECTV 165
Query: 220 IKDPQNPSRNRGFSFVLY 237
++ P S+ G +FV +
Sbjct: 166 LRSPDGTSK--GCAFVKF 181
Score = 115 (45.5 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G L K EED+R L +P G + E +++ + G SKG AFV F S+ A+ AI
Sbjct: 135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIRG 193
Query: 168 LH-SKELKG 175
LH S+ + G
Sbjct: 194 LHGSRTMAG 202
Score = 60 (26.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 17/84 (20%), Positives = 36/84 (42%)
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
P + P + L++ ++P ++ + F G V KV + + + FGF
Sbjct: 382 PSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGF 441
Query: 327 IHYAERSSALKAVKDTEKYEIDGK 350
+ + +SA A++ ++I K
Sbjct: 442 VSFDNPTSAQTAIQAMNGFQIGMK 465
Score = 40 (19.1 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
LFI ++P+ + + E + G V + N S+ F FV + N A + Q
Sbjct: 398 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC--FGFVSFDNPTSAQTAIQ 455
Query: 249 KM 250
M
Sbjct: 456 AM 457
WARNING: HSPs involving 1137 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.130 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 360 318 0.00083 116 3 11 23 0.49 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1387
No. of states in DFA: 604 (64 KB)
Total size of DFA: 218 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.66u 0.08s 35.74t Elapsed: 00:00:24
Total cpu time: 35.75u 0.08s 35.83t Elapsed: 00:00:25
Start: Fri May 10 22:01:07 2013 End: Fri May 10 22:01:32 2013
WARNINGS ISSUED: 2