Query 018159
Match_columns 360
No_of_seqs 264 out of 2392
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:38:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.5E-46 9.6E-51 342.8 30.9 251 105-357 2-346 (352)
2 KOG0117 Heterogeneous nuclear 100.0 2.3E-45 5E-50 320.2 25.7 246 103-355 80-326 (506)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 8E-43 1.7E-47 328.3 28.2 247 103-357 55-304 (578)
4 KOG0145 RNA-binding protein EL 100.0 2.6E-41 5.6E-46 275.3 21.9 249 105-355 40-353 (360)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-40 2.8E-45 323.7 28.7 243 108-356 2-257 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 5.1E-39 1.1E-43 312.5 28.0 248 106-357 88-361 (562)
7 TIGR01622 SF-CC1 splicing fact 100.0 6E-38 1.3E-42 298.4 29.6 249 103-358 86-446 (457)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7E-38 1.5E-42 297.2 29.7 237 105-356 1-347 (481)
9 KOG0127 Nucleolar protein fibr 100.0 1.3E-38 2.9E-43 284.0 23.0 248 106-358 5-376 (678)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.3E-37 1.6E-41 294.9 27.8 243 104-357 173-499 (509)
11 TIGR01645 half-pint poly-U bin 100.0 7.6E-36 1.7E-40 281.4 29.6 161 104-268 105-282 (612)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.3E-35 1.6E-39 276.6 29.1 233 106-351 96-465 (481)
13 KOG0148 Apoptosis-promoting RN 100.0 3.2E-35 6.9E-40 241.2 17.5 221 104-356 4-234 (321)
14 KOG0144 RNA-binding protein CU 100.0 6.4E-35 1.4E-39 253.8 17.3 247 105-354 33-498 (510)
15 KOG0123 Polyadenylate-binding 100.0 3.3E-31 7.1E-36 239.4 22.2 237 107-356 2-242 (369)
16 KOG0123 Polyadenylate-binding 100.0 1.7E-30 3.6E-35 234.8 20.0 245 105-357 75-346 (369)
17 TIGR01659 sex-lethal sex-letha 100.0 4.1E-30 8.9E-35 231.2 20.7 168 103-272 104-277 (346)
18 KOG0124 Polypyrimidine tract-b 100.0 1E-29 2.2E-34 217.0 19.1 246 106-355 113-530 (544)
19 KOG0127 Nucleolar protein fibr 100.0 4.7E-30 1E-34 229.5 15.4 234 106-342 117-516 (678)
20 KOG0110 RNA-binding protein (R 100.0 1.5E-28 3.2E-33 226.8 17.7 246 104-358 383-691 (725)
21 TIGR01659 sex-lethal sex-letha 100.0 8.1E-28 1.8E-32 216.4 19.6 163 185-357 106-272 (346)
22 KOG0147 Transcriptional coacti 100.0 8.1E-29 1.7E-33 222.8 11.7 250 102-359 175-527 (549)
23 TIGR01645 half-pint poly-U bin 100.0 1.5E-27 3.3E-32 225.4 19.2 168 186-357 107-281 (612)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.7E-26 1.7E-30 208.3 20.1 163 105-271 88-350 (352)
25 KOG4212 RNA-binding protein hn 99.9 7E-25 1.5E-29 191.6 23.5 144 105-252 43-278 (608)
26 KOG0148 Apoptosis-promoting RN 99.9 1.2E-25 2.6E-30 185.0 14.9 159 106-274 62-242 (321)
27 TIGR01622 SF-CC1 splicing fact 99.9 6.6E-25 1.4E-29 208.9 19.6 169 184-357 87-263 (457)
28 TIGR01648 hnRNP-R-Q heterogene 99.9 5.6E-24 1.2E-28 201.1 17.6 196 104-311 136-370 (578)
29 KOG0144 RNA-binding protein CU 99.9 2.3E-24 4.9E-29 188.2 13.1 162 187-356 35-202 (510)
30 KOG0131 Splicing factor 3b, su 99.9 9.6E-24 2.1E-28 164.1 11.3 167 105-274 8-181 (203)
31 KOG0145 RNA-binding protein EL 99.9 2.2E-23 4.9E-28 170.6 12.0 157 184-350 39-197 (360)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.6E-22 3.5E-27 195.2 18.4 162 105-269 294-501 (509)
33 KOG0110 RNA-binding protein (R 99.9 7.8E-23 1.7E-27 189.2 14.5 220 104-356 225-594 (725)
34 KOG0146 RNA-binding protein ET 99.9 1.1E-22 2.4E-27 167.3 13.5 247 104-354 17-359 (371)
35 KOG0131 Splicing factor 3b, su 99.9 4.3E-22 9.2E-27 155.0 11.7 164 184-356 7-173 (203)
36 KOG0117 Heterogeneous nuclear 99.9 5.2E-21 1.1E-25 168.2 19.5 182 156-357 42-245 (506)
37 KOG4206 Spliceosomal protein s 99.9 2.9E-20 6.4E-25 150.7 17.3 205 106-356 9-218 (221)
38 KOG0109 RNA-binding protein LA 99.9 3.1E-21 6.8E-26 160.7 10.2 147 107-273 3-153 (346)
39 KOG0109 RNA-binding protein LA 99.8 6.1E-21 1.3E-25 159.0 9.6 143 187-355 3-145 (346)
40 KOG0124 Polypyrimidine tract-b 99.8 2.1E-20 4.6E-25 160.2 11.4 167 187-357 114-287 (544)
41 KOG1190 Polypyrimidine tract-b 99.8 3.5E-19 7.7E-24 154.9 16.0 238 104-356 26-369 (492)
42 KOG4205 RNA-binding protein mu 99.8 5.3E-20 1.2E-24 160.8 9.9 233 105-344 5-256 (311)
43 KOG0120 Splicing factor U2AF, 99.8 8.1E-19 1.8E-23 160.7 15.4 240 105-355 174-487 (500)
44 KOG4211 Splicing factor hnRNP- 99.8 2E-18 4.3E-23 154.1 17.3 242 102-354 6-352 (510)
45 KOG4205 RNA-binding protein mu 99.8 4.6E-19 9.9E-24 154.9 10.2 167 185-357 5-173 (311)
46 KOG1548 Transcription elongati 99.8 2.6E-17 5.7E-22 140.6 18.8 198 103-355 131-347 (382)
47 KOG0147 Transcriptional coacti 99.8 1.9E-18 4.1E-23 156.3 10.0 166 187-357 180-355 (549)
48 PLN03134 glycine-rich RNA-bind 99.7 1.1E-17 2.3E-22 132.3 10.8 83 104-186 32-114 (144)
49 KOG1457 RNA binding protein (c 99.7 1.3E-16 2.7E-21 128.4 15.0 233 103-348 31-274 (284)
50 KOG0105 Alternative splicing f 99.7 1.5E-16 3.2E-21 124.3 13.7 147 104-262 4-182 (241)
51 KOG1365 RNA-binding protein Fu 99.7 1.5E-16 3.3E-21 137.5 13.9 252 102-359 56-361 (508)
52 KOG1456 Heterogeneous nuclear 99.7 3.2E-15 7E-20 129.0 19.4 239 102-356 27-359 (494)
53 KOG1190 Polypyrimidine tract-b 99.7 4.3E-15 9.2E-20 129.8 19.8 233 107-355 151-486 (492)
54 PLN03134 glycine-rich RNA-bind 99.7 3.6E-16 7.7E-21 123.6 11.3 78 280-357 32-111 (144)
55 KOG1456 Heterogeneous nuclear 99.7 4.9E-14 1.1E-18 121.8 22.6 226 111-350 127-475 (494)
56 PF00076 RRM_1: RNA recognitio 99.7 4.1E-16 8.9E-21 108.3 7.8 69 285-353 1-70 (70)
57 PF00076 RRM_1: RNA recognitio 99.7 6.3E-16 1.4E-20 107.3 8.4 70 109-179 1-70 (70)
58 KOG0122 Translation initiation 99.6 7E-16 1.5E-20 126.0 9.2 82 105-186 188-269 (270)
59 KOG0125 Ataxin 2-binding prote 99.6 1.8E-15 4E-20 128.5 8.8 81 276-356 90-170 (376)
60 PF14259 RRM_6: RNA recognitio 99.6 4.1E-15 8.9E-20 103.2 9.1 70 109-179 1-70 (70)
61 KOG0149 Predicted RNA-binding 99.6 1.4E-15 3.1E-20 123.8 6.9 78 106-184 12-89 (247)
62 KOG4211 Splicing factor hnRNP- 99.6 1.7E-14 3.8E-19 129.2 14.2 162 188-358 12-180 (510)
63 PF14259 RRM_6: RNA recognitio 99.6 5.3E-15 1.2E-19 102.6 7.8 69 285-353 1-70 (70)
64 PLN03120 nucleic acid binding 99.6 9.2E-15 2E-19 123.4 10.0 74 282-357 4-77 (260)
65 KOG0106 Alternative splicing f 99.6 3.9E-15 8.4E-20 122.4 7.6 164 107-354 2-165 (216)
66 COG0724 RNA-binding proteins ( 99.6 9E-14 2E-18 123.8 14.5 173 106-346 115-291 (306)
67 PLN03120 nucleic acid binding 99.6 2.5E-14 5.4E-19 120.8 10.0 76 106-185 4-79 (260)
68 KOG0126 Predicted RNA-binding 99.5 1E-15 2.2E-20 119.4 1.0 80 104-183 33-112 (219)
69 KOG0113 U1 small nuclear ribon 99.5 1.9E-14 4.2E-19 120.9 8.4 81 104-184 99-179 (335)
70 KOG0105 Alternative splicing f 99.5 2E-13 4.4E-18 106.9 13.3 152 185-348 5-176 (241)
71 KOG0121 Nuclear cap-binding pr 99.5 1.9E-14 4.1E-19 105.8 6.8 81 103-183 33-113 (153)
72 PLN03213 repressor of silencin 99.5 4.1E-14 8.9E-19 126.5 8.7 78 105-186 9-88 (759)
73 KOG4212 RNA-binding protein hn 99.5 5E-13 1.1E-17 117.9 15.1 166 186-355 44-289 (608)
74 KOG0114 Predicted RNA-binding 99.5 1.4E-13 3.1E-18 97.3 9.0 75 280-355 16-90 (124)
75 PLN03121 nucleic acid binding 99.5 1.1E-13 2.4E-18 114.9 9.9 75 281-357 4-78 (243)
76 KOG0114 Predicted RNA-binding 99.5 1.4E-13 3.1E-18 97.3 8.7 80 104-186 16-95 (124)
77 smart00362 RRM_2 RNA recogniti 99.5 2.3E-13 5E-18 94.4 9.6 72 284-355 1-72 (72)
78 PLN03121 nucleic acid binding 99.5 1.5E-13 3.3E-18 114.2 9.9 77 104-184 3-79 (243)
79 KOG0121 Nuclear cap-binding pr 99.5 7.4E-14 1.6E-18 102.7 6.9 77 280-356 34-112 (153)
80 smart00362 RRM_2 RNA recogniti 99.5 2.3E-13 5E-18 94.4 8.8 72 108-181 1-72 (72)
81 KOG0130 RNA-binding protein RB 99.5 9.3E-14 2E-18 103.1 6.8 80 280-359 70-151 (170)
82 KOG4207 Predicted splicing fac 99.5 7E-14 1.5E-18 111.4 6.0 82 104-185 11-92 (256)
83 PLN03213 repressor of silencin 99.5 2.2E-13 4.7E-18 121.9 9.0 74 281-356 9-84 (759)
84 KOG0122 Translation initiation 99.4 2.7E-13 5.9E-18 111.0 7.9 78 280-357 187-266 (270)
85 KOG0107 Alternative splicing f 99.4 2.5E-13 5.4E-18 105.7 7.3 72 282-356 10-81 (195)
86 smart00360 RRM RNA recognition 99.4 4.9E-13 1.1E-17 92.4 8.2 71 111-181 1-71 (71)
87 KOG0130 RNA-binding protein RB 99.4 2E-13 4.3E-18 101.3 6.1 80 105-184 71-150 (170)
88 KOG0125 Ataxin 2-binding prote 99.4 3E-13 6.5E-18 115.2 7.8 79 105-185 95-173 (376)
89 KOG0111 Cyclophilin-type pepti 99.4 1.8E-13 4E-18 110.1 5.9 84 104-187 8-91 (298)
90 KOG0107 Alternative splicing f 99.4 4.7E-13 1E-17 104.1 7.3 75 106-185 10-84 (195)
91 KOG0113 U1 small nuclear ribon 99.4 1E-12 2.3E-17 110.6 9.1 75 280-354 99-175 (335)
92 KOG4207 Predicted splicing fac 99.4 5.6E-13 1.2E-17 106.3 7.0 74 282-355 13-88 (256)
93 cd00590 RRM RRM (RNA recogniti 99.4 3E-12 6.6E-17 89.2 9.8 73 284-356 1-74 (74)
94 smart00360 RRM RNA recognition 99.4 1.6E-12 3.6E-17 89.7 8.3 68 287-354 1-70 (71)
95 cd00590 RRM RRM (RNA recogniti 99.4 2.9E-12 6.3E-17 89.3 9.5 74 108-182 1-74 (74)
96 KOG0128 RNA-binding protein SA 99.4 5.3E-14 1.2E-18 133.6 -0.6 221 102-350 567-805 (881)
97 KOG0129 Predicted RNA-binding 99.4 3.3E-11 7.2E-16 109.2 17.2 186 102-358 255-452 (520)
98 KOG0126 Predicted RNA-binding 99.4 1.2E-13 2.5E-18 108.0 1.0 77 281-357 34-112 (219)
99 PF13893 RRM_5: RNA recognitio 99.4 4.2E-12 9E-17 83.6 8.1 55 299-356 1-55 (56)
100 KOG0108 mRNA cleavage and poly 99.4 1.8E-12 3.9E-17 118.8 8.3 80 107-186 19-98 (435)
101 KOG0149 Predicted RNA-binding 99.3 3.8E-12 8.3E-17 104.0 6.7 74 281-355 11-86 (247)
102 smart00361 RRM_1 RNA recogniti 99.3 1.2E-11 2.6E-16 85.3 7.7 59 296-354 2-69 (70)
103 smart00361 RRM_1 RNA recogniti 99.3 1.7E-11 3.6E-16 84.6 7.4 62 120-181 2-70 (70)
104 COG0724 RNA-binding proteins ( 99.3 2.6E-11 5.6E-16 107.9 9.7 76 282-357 115-192 (306)
105 PF13893 RRM_5: RNA recognitio 99.3 2.9E-11 6.3E-16 79.6 7.3 56 123-183 1-56 (56)
106 KOG0120 Splicing factor U2AF, 99.2 5.3E-11 1.1E-15 109.8 10.8 166 101-269 284-491 (500)
107 KOG0146 RNA-binding protein ET 99.2 1.2E-11 2.5E-16 102.7 5.4 87 101-187 280-366 (371)
108 KOG4208 Nucleolar RNA-binding 99.2 5.8E-11 1.3E-15 95.3 8.4 85 102-186 45-130 (214)
109 KOG4307 RNA binding protein RB 99.2 1.6E-10 3.4E-15 107.8 12.3 162 190-357 315-511 (944)
110 KOG0108 mRNA cleavage and poly 99.2 4.8E-11 1E-15 109.5 8.0 74 283-356 19-94 (435)
111 KOG4660 Protein Mei2, essentia 99.2 9.7E-11 2.1E-15 107.1 9.4 72 104-180 73-144 (549)
112 KOG4307 RNA binding protein RB 99.2 3.7E-10 8.1E-15 105.4 13.3 73 283-355 868-942 (944)
113 KOG0111 Cyclophilin-type pepti 99.2 2.4E-11 5.2E-16 98.0 3.8 76 280-355 8-85 (298)
114 KOG0415 Predicted peptidyl pro 99.1 7.5E-11 1.6E-15 101.7 6.2 87 101-187 234-320 (479)
115 KOG1365 RNA-binding protein Fu 99.1 1.3E-09 2.8E-14 95.1 12.1 144 106-253 161-347 (508)
116 KOG4206 Spliceosomal protein s 99.0 8.3E-10 1.8E-14 90.2 7.5 74 282-356 9-86 (221)
117 KOG4454 RNA binding protein (R 99.0 1.2E-10 2.6E-15 94.1 1.8 139 101-251 4-146 (267)
118 KOG4208 Nucleolar RNA-binding 99.0 1.1E-09 2.5E-14 87.9 7.2 77 281-357 48-127 (214)
119 KOG0132 RNA polymerase II C-te 99.0 1.1E-09 2.4E-14 103.7 7.7 73 281-357 420-492 (894)
120 KOG0128 RNA-binding protein SA 99.0 4.1E-11 8.8E-16 114.4 -2.3 134 104-251 665-798 (881)
121 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.3E-09 2.8E-14 99.6 7.2 81 104-184 403-483 (940)
122 KOG4210 Nuclear localization s 98.9 1.5E-09 3.2E-14 95.3 6.2 164 186-354 88-258 (285)
123 KOG0153 Predicted RNA-binding 98.9 3.4E-09 7.5E-14 91.5 7.4 79 101-185 223-302 (377)
124 KOG0153 Predicted RNA-binding 98.9 4.5E-09 9.7E-14 90.8 7.7 73 280-356 226-299 (377)
125 KOG0132 RNA polymerase II C-te 98.9 3.2E-09 7E-14 100.5 7.3 75 105-185 420-494 (894)
126 KOG4210 Nuclear localization s 98.9 3.9E-09 8.5E-14 92.7 6.0 162 105-271 87-265 (285)
127 KOG4661 Hsp27-ERE-TATA-binding 98.8 8.2E-09 1.8E-13 94.5 7.3 78 280-357 403-482 (940)
128 KOG0415 Predicted peptidyl pro 98.8 8.6E-09 1.9E-13 89.2 6.6 77 279-355 236-314 (479)
129 PF04059 RRM_2: RNA recognitio 98.8 4.4E-08 9.5E-13 70.9 9.2 79 106-184 1-85 (97)
130 KOG4676 Splicing factor, argin 98.8 1.9E-09 4.1E-14 94.3 2.5 203 106-348 7-214 (479)
131 KOG0533 RRM motif-containing p 98.8 2.1E-08 4.5E-13 84.9 8.1 80 105-185 82-161 (243)
132 KOG0112 Large RNA-binding prot 98.8 7.2E-09 1.6E-13 99.8 5.5 153 186-355 372-524 (975)
133 KOG0112 Large RNA-binding prot 98.8 8.2E-09 1.8E-13 99.4 5.4 161 102-271 368-532 (975)
134 KOG1457 RNA binding protein (c 98.7 5.7E-08 1.2E-12 79.0 8.9 76 280-355 32-113 (284)
135 KOG0533 RRM motif-containing p 98.7 5.1E-08 1.1E-12 82.5 8.4 74 282-355 83-157 (243)
136 KOG0116 RasGAP SH3 binding pro 98.7 2.6E-08 5.5E-13 91.2 7.0 80 105-185 287-366 (419)
137 KOG4660 Protein Mei2, essentia 98.7 1.3E-08 2.7E-13 93.5 4.9 72 279-353 72-143 (549)
138 PF04059 RRM_2: RNA recognitio 98.7 6.7E-08 1.5E-12 69.9 7.6 66 283-348 2-71 (97)
139 KOG3152 TBP-binding protein, a 98.7 1.4E-08 3E-13 84.3 3.2 74 105-178 73-158 (278)
140 KOG4209 Splicing factor RNPS1, 98.6 6E-08 1.3E-12 82.4 6.3 80 104-184 99-178 (231)
141 KOG0226 RNA-binding proteins [ 98.6 3.6E-08 7.7E-13 81.8 4.2 85 100-184 184-268 (290)
142 KOG0116 RasGAP SH3 binding pro 98.6 6.6E-08 1.4E-12 88.5 6.1 72 283-355 289-362 (419)
143 KOG0226 RNA-binding proteins [ 98.6 5.2E-08 1.1E-12 80.8 4.9 138 214-355 126-265 (290)
144 KOG1548 Transcription elongati 98.6 1.5E-07 3.2E-12 81.6 7.7 77 281-357 133-218 (382)
145 PF11608 Limkain-b1: Limkain b 98.6 5.3E-07 1.1E-11 62.0 8.0 67 283-357 3-74 (90)
146 KOG4454 RNA binding protein (R 98.5 4.4E-08 9.5E-13 79.4 3.0 78 280-357 7-84 (267)
147 PF11608 Limkain-b1: Limkain b 98.5 1E-06 2.2E-11 60.6 7.7 70 107-186 3-77 (90)
148 PF08777 RRM_3: RNA binding mo 98.4 5.4E-07 1.2E-11 66.9 6.1 71 283-357 2-77 (105)
149 KOG4209 Splicing factor RNPS1, 98.4 3.2E-07 6.9E-12 78.0 5.3 78 280-358 99-178 (231)
150 KOG0151 Predicted splicing reg 98.3 1.2E-06 2.6E-11 82.7 6.2 78 280-357 172-254 (877)
151 KOG0106 Alternative splicing f 98.2 1E-06 2.3E-11 73.0 4.0 67 284-356 3-69 (216)
152 KOG0151 Predicted splicing reg 98.2 2.9E-06 6.3E-11 80.2 6.9 82 103-184 171-255 (877)
153 COG5175 MOT2 Transcriptional r 98.1 4.5E-06 9.8E-11 72.2 6.2 90 105-194 113-212 (480)
154 KOG2193 IGF-II mRNA-binding pr 98.1 2.9E-07 6.3E-12 81.7 -1.1 150 187-354 2-151 (584)
155 PF08777 RRM_3: RNA binding mo 98.1 1.2E-05 2.5E-10 59.8 6.8 59 107-171 2-60 (105)
156 PF05172 Nup35_RRM: Nup53/35/4 98.1 2.8E-05 6.1E-10 56.8 7.9 74 282-357 6-89 (100)
157 KOG1995 Conserved Zn-finger pr 98.0 5.8E-06 1.3E-10 72.5 4.2 79 280-358 64-152 (351)
158 KOG1995 Conserved Zn-finger pr 98.0 6.3E-06 1.4E-10 72.3 4.3 84 104-187 64-155 (351)
159 KOG2314 Translation initiation 98.0 2.8E-05 6.1E-10 71.9 8.1 74 282-355 58-139 (698)
160 KOG1855 Predicted RNA-binding 97.9 1.5E-05 3.3E-10 71.2 5.5 69 280-348 229-312 (484)
161 KOG3152 TBP-binding protein, a 97.9 6.2E-06 1.4E-10 68.8 2.8 71 281-351 73-157 (278)
162 PF14605 Nup35_RRM_2: Nup53/35 97.9 4.1E-05 8.8E-10 49.1 5.6 52 283-339 2-53 (53)
163 KOG2193 IGF-II mRNA-binding pr 97.8 4.4E-06 9.6E-11 74.4 0.3 137 107-255 2-144 (584)
164 PF08952 DUF1866: Domain of un 97.8 0.00017 3.7E-09 55.9 8.2 70 280-356 25-103 (146)
165 KOG2202 U2 snRNP splicing fact 97.8 1.5E-05 3.2E-10 66.9 2.4 63 297-359 83-147 (260)
166 COG5175 MOT2 Transcriptional r 97.7 9.7E-05 2.1E-09 64.1 6.5 73 282-354 114-197 (480)
167 KOG4676 Splicing factor, argin 97.7 6E-05 1.3E-09 66.7 5.2 74 284-358 9-87 (479)
168 KOG4849 mRNA cleavage factor I 97.7 8E-05 1.7E-09 64.9 5.3 80 105-184 79-160 (498)
169 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00018 3.8E-09 46.1 4.9 52 107-165 2-53 (53)
170 KOG0129 Predicted RNA-binding 97.6 0.0003 6.5E-09 64.8 8.2 64 104-167 368-432 (520)
171 KOG1996 mRNA splicing factor [ 97.4 0.00053 1.1E-08 58.6 6.5 60 297-356 301-363 (378)
172 KOG0115 RNA-binding protein p5 97.3 0.00045 9.7E-09 58.0 5.2 101 243-358 7-112 (275)
173 KOG2314 Translation initiation 97.2 0.00092 2E-08 62.2 7.2 77 105-182 57-140 (698)
174 KOG2416 Acinus (induces apopto 97.2 0.00072 1.6E-08 63.3 5.9 79 102-186 440-522 (718)
175 KOG0115 RNA-binding protein p5 97.2 0.0012 2.7E-08 55.5 6.7 92 159-254 5-96 (275)
176 KOG1855 Predicted RNA-binding 97.1 0.00047 1E-08 62.0 3.8 66 105-170 230-308 (484)
177 PF08952 DUF1866: Domain of un 97.1 0.0022 4.7E-08 49.8 6.5 73 104-185 25-106 (146)
178 PF08675 RNA_bind: RNA binding 97.0 0.0057 1.2E-07 42.4 7.1 56 106-170 9-64 (87)
179 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0047 1E-07 45.1 6.8 76 106-183 6-89 (100)
180 KOG2416 Acinus (induces apopto 96.9 0.0011 2.3E-08 62.2 4.2 72 278-353 440-515 (718)
181 PF03467 Smg4_UPF3: Smg-4/UPF3 96.7 0.0017 3.8E-08 53.1 3.7 71 105-175 6-82 (176)
182 PF07576 BRAP2: BRCA1-associat 96.4 0.028 6.1E-07 41.9 8.2 67 283-349 14-81 (110)
183 KOG1996 mRNA splicing factor [ 96.4 0.0093 2E-07 51.2 6.2 64 121-184 301-365 (378)
184 PF15023 DUF4523: Protein of u 96.4 0.025 5.3E-07 43.5 7.6 72 280-357 84-159 (166)
185 KOG2202 U2 snRNP splicing fact 96.4 0.0017 3.6E-08 54.8 1.6 62 122-184 84-146 (260)
186 KOG0804 Cytoplasmic Zn-finger 96.3 0.013 2.8E-07 53.5 7.0 68 282-349 74-142 (493)
187 PF10309 DUF2414: Protein of u 96.2 0.035 7.5E-07 36.5 6.7 54 283-342 6-62 (62)
188 PF08675 RNA_bind: RNA binding 96.1 0.025 5.4E-07 39.3 6.1 54 284-344 11-64 (87)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.0074 1.6E-07 49.4 3.8 69 282-350 7-83 (176)
190 KOG4849 mRNA cleavage factor I 96.0 0.0088 1.9E-07 52.6 4.2 77 282-358 80-160 (498)
191 KOG2253 U1 snRNP complex, subu 95.9 0.0076 1.6E-07 57.5 3.7 70 280-356 38-107 (668)
192 KOG4285 Mitotic phosphoprotein 95.9 0.072 1.6E-06 46.2 9.0 69 283-357 198-267 (350)
193 PF10309 DUF2414: Protein of u 95.4 0.082 1.8E-06 34.8 6.0 54 107-168 6-62 (62)
194 KOG2318 Uncharacterized conser 95.3 0.11 2.3E-06 49.1 8.9 75 103-177 171-297 (650)
195 KOG2068 MOT2 transcription fac 95.3 0.0097 2.1E-07 52.4 2.0 80 106-185 77-162 (327)
196 PF15023 DUF4523: Protein of u 95.3 0.1 2.2E-06 40.2 7.1 74 103-184 83-160 (166)
197 KOG2135 Proteins containing th 95.0 0.02 4.4E-07 52.5 3.3 74 281-359 371-445 (526)
198 PF07576 BRAP2: BRCA1-associat 95.0 0.31 6.8E-06 36.4 8.9 66 107-174 14-80 (110)
199 PF04847 Calcipressin: Calcipr 94.9 0.089 1.9E-06 43.3 6.5 57 295-355 8-66 (184)
200 KOG2135 Proteins containing th 94.2 0.033 7.1E-07 51.2 2.5 83 105-197 371-454 (526)
201 PF11767 SET_assoc: Histone ly 94.0 0.27 5.8E-06 32.9 5.9 55 117-180 11-65 (66)
202 KOG2068 MOT2 transcription fac 93.9 0.022 4.8E-07 50.2 0.8 71 283-353 78-156 (327)
203 PF03880 DbpA: DbpA RNA bindin 93.9 0.33 7.1E-06 33.4 6.5 59 292-357 11-74 (74)
204 PF04847 Calcipressin: Calcipr 93.8 0.12 2.7E-06 42.5 5.0 61 119-185 8-70 (184)
205 KOG2591 c-Mpl binding protein, 93.6 0.13 2.9E-06 48.3 5.3 70 104-180 173-246 (684)
206 KOG0804 Cytoplasmic Zn-finger 93.5 0.22 4.7E-06 45.8 6.3 71 103-175 71-142 (493)
207 KOG2591 c-Mpl binding protein, 93.2 0.18 3.8E-06 47.5 5.4 69 280-353 173-245 (684)
208 PF11767 SET_assoc: Histone ly 91.5 1.6 3.4E-05 29.2 6.9 55 292-353 10-64 (66)
209 KOG4285 Mitotic phosphoprotein 91.4 0.6 1.3E-05 40.7 6.1 70 107-184 198-268 (350)
210 PF04147 Nop14: Nop14-like fam 90.1 0.55 1.2E-05 48.4 5.7 14 118-131 426-439 (840)
211 PF03880 DbpA: DbpA RNA bindin 90.1 1.6 3.4E-05 30.0 6.3 58 117-183 12-74 (74)
212 KOG4574 RNA-binding protein (c 89.9 0.2 4.3E-06 49.6 2.1 71 109-185 301-373 (1007)
213 KOG2253 U1 snRNP complex, subu 89.4 0.23 4.9E-06 47.9 2.1 70 104-182 38-107 (668)
214 PF14111 DUF4283: Domain of un 89.3 0.81 1.8E-05 36.4 5.1 96 229-327 54-150 (153)
215 KOG4574 RNA-binding protein (c 88.4 0.44 9.6E-06 47.3 3.4 69 285-357 301-371 (1007)
216 KOG2318 Uncharacterized conser 87.9 2.6 5.6E-05 40.3 7.8 78 279-356 171-304 (650)
217 KOG1999 RNA polymerase II tran 87.7 3.6 7.8E-05 41.9 9.1 29 146-174 208-236 (1024)
218 PF07292 NID: Nmi/IFP 35 domai 86.4 0.56 1.2E-05 33.3 2.1 70 233-303 1-73 (88)
219 PF07292 NID: Nmi/IFP 35 domai 86.0 1.1 2.3E-05 31.9 3.3 58 151-208 1-74 (88)
220 KOG2891 Surface glycoprotein [ 85.2 1.5 3.2E-05 37.8 4.4 37 280-316 147-195 (445)
221 KOG4483 Uncharacterized conser 82.4 0.8 1.7E-05 41.5 1.8 55 105-166 390-445 (528)
222 PF05285 SDA1: SDA1; InterPro 81.3 1.8 3.8E-05 39.3 3.7 8 118-125 190-197 (324)
223 PF10567 Nab6_mRNP_bdg: RNA-re 79.7 4.4 9.6E-05 35.5 5.3 61 280-340 13-82 (309)
224 KOG4483 Uncharacterized conser 79.0 5.8 0.00013 36.2 5.9 65 282-357 391-456 (528)
225 KOG4410 5-formyltetrahydrofola 78.5 5.2 0.00011 34.7 5.3 50 104-159 328-378 (396)
226 PF03468 XS: XS domain; Inter 78.2 1.1 2.3E-05 33.9 1.1 49 284-333 10-67 (116)
227 KOG2141 Protein involved in hi 76.9 3 6.4E-05 41.1 3.8 30 324-353 623-652 (822)
228 TIGR03047 PS_II_psb28 photosys 75.8 4.6 9.9E-05 29.7 3.7 27 309-335 12-38 (109)
229 KOG2891 Surface glycoprotein [ 75.3 0.92 2E-05 39.0 0.0 68 106-173 149-247 (445)
230 CHL00128 psbW photosystem II p 74.4 3.4 7.3E-05 30.6 2.7 27 309-335 15-41 (113)
231 PF10567 Nab6_mRNP_bdg: RNA-re 74.1 63 0.0014 28.6 13.1 156 186-343 15-212 (309)
232 PF02714 DUF221: Domain of unk 72.7 7.7 0.00017 35.2 5.4 56 151-208 1-56 (325)
233 PRK13610 photosystem II reacti 72.7 5.2 0.00011 29.5 3.3 40 284-337 10-49 (113)
234 KOG2141 Protein involved in hi 71.9 4 8.8E-05 40.2 3.4 14 289-302 551-564 (822)
235 KOG2038 CAATT-binding transcri 71.2 7.6 0.00016 38.8 5.0 19 109-127 958-976 (988)
236 KOG2295 C2H2 Zn-finger protein 70.9 0.63 1.4E-05 44.0 -2.1 73 106-178 231-303 (648)
237 KOG4410 5-formyltetrahydrofola 68.0 23 0.0005 30.9 6.7 47 282-332 330-377 (396)
238 KOG4019 Calcineurin-mediated s 67.4 6.4 0.00014 31.9 3.1 67 283-353 11-83 (193)
239 PLN00039 photosystem II reacti 66.6 6 0.00013 29.2 2.6 28 309-336 14-41 (111)
240 PF05285 SDA1: SDA1; InterPro 65.8 3.8 8.2E-05 37.2 1.8 6 198-203 231-236 (324)
241 COG4547 CobT Cobalamin biosynt 65.0 11 0.00024 35.3 4.5 13 170-182 423-435 (620)
242 PF14111 DUF4283: Domain of un 63.7 9 0.0002 30.2 3.5 70 148-219 55-137 (153)
243 PRK13612 photosystem II reacti 62.3 8 0.00017 28.7 2.6 28 309-336 17-44 (113)
244 PF15513 DUF4651: Domain of un 62.2 18 0.00039 23.7 3.9 18 121-138 9-26 (62)
245 PRK14548 50S ribosomal protein 61.6 33 0.0007 24.2 5.5 56 285-341 23-80 (84)
246 PF02724 CDC45: CDC45-like pro 61.6 9.3 0.0002 38.1 3.8 14 238-251 399-412 (622)
247 PF02724 CDC45: CDC45-like pro 60.8 6.6 0.00014 39.2 2.6 15 237-251 395-409 (622)
248 PF09073 BUD22: BUD22; InterP 60.7 16 0.00034 34.8 5.0 23 331-353 408-430 (432)
249 KOG4213 RNA-binding protein La 60.6 13 0.00028 30.1 3.6 55 283-341 112-169 (205)
250 PF07530 PRE_C2HC: Associated 60.3 17 0.00036 24.5 3.7 63 121-186 2-65 (68)
251 KOG4019 Calcineurin-mediated s 59.8 7.5 0.00016 31.5 2.2 74 107-186 11-90 (193)
252 KOG1295 Nonsense-mediated deca 59.1 13 0.00028 34.0 3.8 65 283-347 8-77 (376)
253 PF15513 DUF4651: Domain of un 58.2 21 0.00046 23.4 3.7 20 297-316 9-28 (62)
254 TIGR03636 L23_arch archaeal ri 58.1 45 0.00099 23.1 5.6 56 285-341 16-73 (77)
255 PF03468 XS: XS domain; Inter 57.6 12 0.00026 28.3 2.9 55 108-165 10-74 (116)
256 KOG2295 C2H2 Zn-finger protein 57.0 2.2 4.8E-05 40.5 -1.3 68 281-348 230-299 (648)
257 KOG4213 RNA-binding protein La 56.7 14 0.00029 30.0 3.2 58 106-167 111-169 (205)
258 KOG0526 Nucleosome-binding fac 55.8 5.1 0.00011 38.1 0.8 7 113-119 534-540 (615)
259 PF11823 DUF3343: Protein of u 54.7 18 0.0004 24.5 3.3 28 323-350 2-29 (73)
260 TIGR02542 B_forsyth_147 Bacter 54.4 48 0.001 24.8 5.4 109 112-241 9-130 (145)
261 smart00596 PRE_C2HC PRE_C2HC d 54.1 21 0.00047 24.0 3.3 63 121-186 2-65 (69)
262 KOG1295 Nonsense-mediated deca 54.0 15 0.00032 33.6 3.4 68 106-173 7-77 (376)
263 COG5193 LHP1 La protein, small 52.3 6.9 0.00015 35.8 1.0 62 105-166 173-244 (438)
264 PRK14548 50S ribosomal protein 52.1 46 0.00099 23.5 4.9 56 109-167 23-80 (84)
265 cd04889 ACT_PDH-BS-like C-term 51.7 51 0.0011 20.6 4.9 43 296-339 12-55 (56)
266 KOG2773 Apoptosis antagonizing 50.1 11 0.00024 35.1 2.0 16 284-299 383-398 (483)
267 TIGR03636 L23_arch archaeal ri 49.1 58 0.0012 22.6 5.0 56 109-167 16-73 (77)
268 TIGR01651 CobT cobaltochelatas 47.8 37 0.0008 33.3 5.2 16 106-121 295-310 (600)
269 KOG4008 rRNA processing protei 45.7 20 0.00043 30.5 2.6 36 280-315 38-73 (261)
270 COG5638 Uncharacterized conser 44.0 90 0.002 28.9 6.6 36 280-315 144-184 (622)
271 KOG4365 Uncharacterized conser 43.5 4.3 9.3E-05 37.5 -1.6 71 283-354 4-76 (572)
272 PF00403 HMA: Heavy-metal-asso 43.2 87 0.0019 20.0 6.1 54 284-341 1-58 (62)
273 KOG4365 Uncharacterized conser 42.6 4.9 0.00011 37.1 -1.4 78 107-185 4-81 (572)
274 PF07530 PRE_C2HC: Associated 42.4 64 0.0014 21.7 4.3 59 297-358 2-63 (68)
275 PF03912 Psb28: Psb28 protein; 41.8 12 0.00026 27.6 0.8 26 309-334 12-37 (108)
276 KOG2187 tRNA uracil-5-methyltr 41.6 27 0.00059 33.5 3.2 35 322-356 63-97 (534)
277 cd04908 ACT_Bt0572_1 N-termina 40.8 1E+02 0.0022 20.1 8.0 49 295-346 14-63 (66)
278 PF09073 BUD22: BUD22; InterP 40.5 52 0.0011 31.3 5.0 7 290-296 405-411 (432)
279 COG4547 CobT Cobalamin biosynt 40.1 42 0.00091 31.7 4.0 11 296-306 563-573 (620)
280 TIGR00927 2A1904 K+-dependent 37.2 24 0.00051 36.7 2.2 10 107-116 905-914 (1096)
281 KOG4008 rRNA processing protei 37.0 24 0.00053 29.9 1.9 35 102-136 36-70 (261)
282 cd04883 ACT_AcuB C-terminal AC 37.0 1.2E+02 0.0026 19.9 6.5 53 295-348 14-69 (72)
283 PF03439 Spt5-NGN: Early trans 35.8 99 0.0021 21.7 4.7 38 308-348 33-70 (84)
284 KOG3130 Uncharacterized conser 35.7 40 0.00087 31.0 3.2 20 110-129 354-373 (514)
285 PRK13611 photosystem II reacti 35.4 21 0.00046 26.1 1.1 26 309-334 14-39 (104)
286 PF03439 Spt5-NGN: Early trans 35.2 73 0.0016 22.3 3.9 34 132-170 33-66 (84)
287 PF11823 DUF3343: Protein of u 35.1 1.4E+02 0.0031 20.1 6.2 23 150-172 3-25 (73)
288 cd04882 ACT_Bt0572_2 C-termina 34.1 1.3E+02 0.0027 19.2 5.5 49 296-345 13-62 (65)
289 COG1369 POP5 RNase P/RNase MRP 33.8 1.3E+02 0.0028 23.0 5.1 35 323-359 68-102 (124)
290 TIGR01651 CobT cobaltochelatas 33.3 58 0.0013 32.0 4.0 11 296-306 542-552 (600)
291 COG5638 Uncharacterized conser 31.5 1.5E+02 0.0034 27.5 6.1 38 104-141 144-186 (622)
292 KOG0262 RNA polymerase I, larg 31.3 56 0.0012 34.9 3.7 10 282-291 1614-1623(1640)
293 KOG4364 Chromatin assembly fac 31.1 34 0.00074 33.7 2.1 10 15-24 523-532 (811)
294 KOG2773 Apoptosis antagonizing 30.8 44 0.00095 31.4 2.7 8 348-355 445-452 (483)
295 PF05764 YL1: YL1 nuclear prot 30.0 44 0.00095 28.9 2.5 11 195-205 182-192 (240)
296 PF14026 DUF4242: Protein of u 29.2 1.9E+02 0.0042 19.8 6.9 62 285-347 3-71 (77)
297 PF11061 DUF2862: Protein of u 26.7 1.2E+02 0.0026 20.1 3.5 32 297-332 18-52 (64)
298 TIGR00927 2A1904 K+-dependent 26.1 42 0.0009 35.0 1.8 7 150-156 933-939 (1096)
299 COG3254 Uncharacterized conser 25.5 1.8E+02 0.004 21.4 4.5 43 297-340 27-69 (105)
300 PF08734 GYD: GYD domain; Int 25.1 2.6E+02 0.0056 19.9 5.8 45 297-343 23-68 (91)
301 PF02994 Transposase_22: L1 tr 24.9 3E+02 0.0064 25.6 7.1 75 282-356 190-286 (370)
302 PRK03717 ribonuclease P protei 24.4 1.5E+02 0.0033 22.4 4.3 35 323-359 66-102 (120)
303 PTZ00191 60S ribosomal protein 24.2 2.6E+02 0.0055 22.1 5.5 55 285-340 84-140 (145)
304 COG0150 PurM Phosphoribosylami 24.2 29 0.00063 31.4 0.4 48 296-345 275-322 (345)
305 COG5193 LHP1 La protein, small 24.1 37 0.00079 31.3 1.0 58 283-340 175-244 (438)
306 KOG0156 Cytochrome P450 CYP2 s 23.9 1.8E+02 0.0038 28.3 5.6 59 286-352 36-97 (489)
307 KOG0650 WD40 repeat nucleolar 23.9 1.4E+02 0.0029 29.5 4.6 15 107-121 119-133 (733)
308 COG5507 Uncharacterized conser 23.4 1E+02 0.0022 22.3 2.8 20 149-168 67-86 (117)
309 PF04026 SpoVG: SpoVG; InterP 23.3 1.8E+02 0.0039 20.5 4.1 26 132-157 2-27 (84)
310 cd04879 ACT_3PGDH-like ACT_3PG 22.8 2.1E+02 0.0046 18.1 5.1 40 293-332 10-50 (71)
311 PF08442 ATP-grasp_2: ATP-gras 22.8 3.9E+02 0.0085 22.4 6.8 54 294-348 25-81 (202)
312 PF06014 DUF910: Bacterial pro 22.8 55 0.0012 21.5 1.3 16 297-312 5-20 (62)
313 PRK11901 hypothetical protein; 21.7 2.5E+02 0.0055 25.4 5.6 67 99-169 238-305 (327)
314 cd04905 ACT_CM-PDT C-terminal 21.3 2.7E+02 0.0059 18.8 5.4 49 296-344 15-68 (80)
315 PF08544 GHMP_kinases_C: GHMP 21.0 2.8E+02 0.006 18.8 6.1 44 297-343 37-80 (85)
316 PRK08559 nusG transcription an 20.1 3.4E+02 0.0074 21.5 5.7 34 309-345 36-69 (153)
317 PF03896 TRAP_alpha: Transloco 20.1 69 0.0015 28.5 1.8 7 107-113 85-91 (285)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4.5e-46 Score=342.79 Aligned_cols=251 Identities=22% Similarity=0.391 Sum_probs=219.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+..+|||+|||+.+|+++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|.+||..|+|..+.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cc------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccC
Q 018159 185 TK------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (360)
Q Consensus 185 ~~------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~ 258 (360)
+. ++|||+|||..+++++|+.+|.++|. +..++++.+ ..++.++|||||.|.+.++|..|+..|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 43 57999999999999999999999998 999999887 45778999999999999999999999998765555
Q ss_pred CCCceeeecCCCCCCCc---------------------------------------------------------------
Q 018159 259 GNTPTISWADPKSTPDH--------------------------------------------------------------- 275 (360)
Q Consensus 259 ~~~~~v~~~~~~~~~~~--------------------------------------------------------------- 275 (360)
...+.+.|+........
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 56677776643321000
Q ss_pred -----------------------cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeC
Q 018159 276 -----------------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYA 330 (360)
Q Consensus 276 -----------------------~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~ 330 (360)
......+.+|||+|||..+++++|+++|++||.|.+|+|+.+..+ . ||||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 000111236999999999999999999999999999999988633 3 999999999
Q ss_pred CHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 331 ERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 331 ~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+.++|.+|+..|||..|+||.|+|.+.
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 999999999999999999999999765
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.3e-45 Score=320.16 Aligned_cols=246 Identities=41% Similarity=0.739 Sum_probs=235.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCC-CCcEEEEe
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL-KGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~-~g~~l~v~ 181 (360)
++.++-|||+.||.++.+++|.-||...|.|-.+++++++.+|.+||||||.|.+++.|+.|++.||+..| .|+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999887 69999999
Q ss_pred ecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCC
Q 018159 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (360)
Q Consensus 182 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (360)
.+..+++|||+|+|+.++.++|++.+.+.++.+..+.+...|.+..+.||||||+|.+...|..|.+.|....+++.|..
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018159 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
+.|.|+.|...+... .....+.|||+||+.++|++.|+.+|+.||.|.+|+.++ .||||.|.+.++|.+|++.
T Consensus 240 ~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r------DYaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR------DYAFVHFAEREDAVKAMKE 312 (506)
T ss_pred ceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc------ceeEEeecchHHHHHHHHH
Confidence 999999999888877 447789999999999999999999999999999999884 5999999999999999999
Q ss_pred hCCceeCCeeEeEE
Q 018159 342 TEKYEIDGKSHLHF 355 (360)
Q Consensus 342 lng~~~~G~~l~v~ 355 (360)
+||+.|+|..|-|.
T Consensus 313 ~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 313 TNGKELDGSPIEVT 326 (506)
T ss_pred hcCceecCceEEEE
Confidence 99999999999875
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=8e-43 Score=328.25 Aligned_cols=247 Identities=34% Similarity=0.617 Sum_probs=221.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCC-CcEEEEe
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 181 (360)
+...++|||+|||+++++++|+.+|++||.|..|+|+++ .+|+++|||||+|.+.++|.+||..||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 78999999999999999999999999998885 8999999
Q ss_pred ecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCC
Q 018159 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (360)
Q Consensus 182 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (360)
.+...++|||+|||..++.++|.+.|..++..+..+.+...+...++++|||||.|.+..+|..|+..++...+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99889999999999999999999999999865776666655556678899999999999999999999887777889999
Q ss_pred ceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHH
Q 018159 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (360)
+.|.|+.+........ ....++|||+|||..+++++|+++|++| |.|.+|.+++ +||||+|.+.++|.+|+
T Consensus 214 I~VdwA~p~~~~d~~~-~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDV-MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEEeecccccccccc-cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec------CeEEEEeCCHHHHHHHH
Confidence 9999998875443222 2446799999999999999999999999 9999998753 79999999999999999
Q ss_pred HhhCCceeCCeeEeEEee
Q 018159 340 KDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 340 ~~lng~~~~G~~l~v~p~ 357 (360)
..|||..|+|+.|.|.+.
T Consensus 287 ~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLA 304 (578)
T ss_pred HHhCCCEECCEEEEEEEc
Confidence 999999999999999854
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.6e-41 Score=275.34 Aligned_cols=249 Identities=22% Similarity=0.389 Sum_probs=224.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
.++.|.|.-||..+|+++|+.+|...|.|.+|++++++.+|.+.||+||.|-.+++|.+|+..|||..+..++|+|++++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccC
Q 018159 185 TK------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (360)
Q Consensus 185 ~~------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~ 258 (360)
|+ ..|||++||+.++..+|..+|++||. |..-++.-+ ..+|.++|.+||.|..+..|..|++.+|+......
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 86 47999999999999999999999998 766777766 67899999999999999999999999998877666
Q ss_pred CCCceeeecCCCCCCCc---------------------------------------------------------cccccc
Q 018159 259 GNTPTISWADPKSTPDH---------------------------------------------------------SAAASQ 281 (360)
Q Consensus 259 ~~~~~v~~~~~~~~~~~---------------------------------------------------------~~~~~~ 281 (360)
..+|.|.++..+..... ++....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 77788887765532210 000111
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++|||.||..+.++.-|-++|.+||.|..|++.++..++ ||||||++.+-..|..|+..|||..+++|.|.|.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 5889999999999999999999999999999999988765 9999999999999999999999999999999875
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-40 Score=323.67 Aligned_cols=243 Identities=27% Similarity=0.475 Sum_probs=218.1
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc--
Q 018159 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET-- 185 (360)
Q Consensus 108 ~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~-- 185 (360)
+|||+|||+++|+++|+++|++||.|.+|+++++..|++++|||||+|.+.++|.+|+..+++..+.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCC
Q 018159 186 ------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (360)
Q Consensus 186 ------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 259 (360)
..+|||+|||..++.++|+++|+.||. |..++++.+ .+++++|||||+|.+.++|.+|+..+++. .+.+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~-i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~--~~~~ 156 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN-ILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGM--LLND 156 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCC-cceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhccc--EecC
Confidence 247999999999999999999999998 999999886 46789999999999999999999998754 6678
Q ss_pred CCceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHH
Q 018159 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338 (360)
Q Consensus 260 ~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A 338 (360)
+.+.+....+..... .......++|||+|||..+|+++|+++|+.||.|.++.+..+..+. +|||||.|.++++|.+|
T Consensus 157 ~~i~v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~A 235 (562)
T TIGR01628 157 KEVYVGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKA 235 (562)
T ss_pred ceEEEeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHH
Confidence 888887655543332 1123445789999999999999999999999999999998877665 89999999999999999
Q ss_pred HHhhCCceeC----CeeEeEEe
Q 018159 339 VKDTEKYEID----GKSHLHFP 356 (360)
Q Consensus 339 ~~~lng~~~~----G~~l~v~p 356 (360)
+..|||..|. |+.|.|.+
T Consensus 236 v~~l~g~~i~~~~~g~~l~v~~ 257 (562)
T TIGR01628 236 VEEMNGKKIGLAKEGKKLYVGR 257 (562)
T ss_pred HHHhCCcEecccccceeeEeec
Confidence 9999999999 99888764
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.1e-39 Score=312.53 Aligned_cols=248 Identities=26% Similarity=0.451 Sum_probs=216.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+++++++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|+..+||..+.|+.|.|.....
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 4679999999999999999999999999999999875 588999999999999999999999999999999999865432
Q ss_pred -----------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCC
Q 018159 186 -----------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254 (360)
Q Consensus 186 -----------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~ 254 (360)
.++|||+|||..+++++|+++|..||. |..+.++++ .++.++|||||.|.+.++|.+|+..+++..
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g~~ 243 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNGKK 243 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCCcE
Confidence 256999999999999999999999998 999999987 468899999999999999999999998664
Q ss_pred cccC--CCCceeeecCCCCCCC------------ccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC
Q 018159 255 FKLD--GNTPTISWADPKSTPD------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320 (360)
Q Consensus 255 ~~~~--~~~~~v~~~~~~~~~~------------~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~ 320 (360)
+... ++.+.+.++....... .........+|||+|||..+++++|+++|++||.|.+|+++.+..+
T Consensus 244 i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g 323 (562)
T TIGR01628 244 IGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKG 323 (562)
T ss_pred ecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCC
Confidence 3311 7788887776554321 0111234678999999999999999999999999999999888655
Q ss_pred C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 321 K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 321 ~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
. +|||||+|.+.++|.+|+..|||+.|+|++|.|.+.
T Consensus 324 ~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 324 VSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred CcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 5 999999999999999999999999999999999764
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=6e-38 Score=298.36 Aligned_cols=249 Identities=26% Similarity=0.387 Sum_probs=213.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+++.+|+++|++||.|..|.++.++.+|+++|||||+|.+.++|.+||. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3467899999999999999999999999999999999999999999999999999999999995 899999999999977
Q ss_pred cCc------------------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHH
Q 018159 183 SET------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (360)
Q Consensus 183 ~~~------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (360)
+.. ..+|||+|||..+++++|+.+|.+||. |..+.++++ ..++.++|||||+|.+.++|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRD-PETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHH
Confidence 532 267999999999999999999999998 999999988 567899999999999999999
Q ss_pred HHHHHHhcCCcccCCCCceeeecCCCCCCC--------------------------------------------------
Q 018159 245 YSRQKMLNANFKLDGNTPTISWADPKSTPD-------------------------------------------------- 274 (360)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------------------------------------- 274 (360)
.|+..|++ ..+.|+.+.|.|+.......
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999986 57788999998843110000
Q ss_pred ----------------------------------ccccccccceEEEcCCCCCCCH----------HHHHHHHhhcCCee
Q 018159 275 ----------------------------------HSAAASQVKALYVKNIPDNTST----------EKIKELFQRHGEVT 310 (360)
Q Consensus 275 ----------------------------------~~~~~~~~~~l~V~nlp~~~t~----------~~L~~~f~~~G~v~ 310 (360)
.......+++|+|.||....+. ++|++.|++||.|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 0001134678999999654442 68999999999999
Q ss_pred EEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018159 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 311 ~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
.|.+..... .|++||.|.++++|.+|++.|||+.|+|+.|.+..+.
T Consensus 401 ~v~v~~~~~--~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 401 HIYVDTKNS--AGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred EEEEeCCCC--ceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 999874432 4999999999999999999999999999999987654
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7e-38 Score=297.22 Aligned_cols=237 Identities=22% Similarity=0.255 Sum_probs=199.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHh--cCCCCCCcEEEEee
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL--HSKELKGKTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~ 182 (360)
++++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..+ ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999853 679999999999999999864 67889999999998
Q ss_pred cCcc------------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHH
Q 018159 183 SETK------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (360)
Q Consensus 183 ~~~~------------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (360)
+... .+|+|.||++.++.+.|+++|+.||. |..+.++++. .+++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~~-----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTKN-----NVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEecC-----CceEEEEEECCHHHHH
Confidence 7421 15899999999999999999999998 9999988752 2468999999999999
Q ss_pred HHHHHHhcCCcccCCCCceeeecCCCCCC--------------------C-----------c------------------
Q 018159 245 YSRQKMLNANFKLDGNTPTISWADPKSTP--------------------D-----------H------------------ 275 (360)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~-----------~------------------ 275 (360)
+|+..|++..+...+..+.+.|+.+.... . .
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 99999998765433344444444321100 0 0
Q ss_pred ----------------------------------------cccccccceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEc
Q 018159 276 ----------------------------------------SAAASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVM 314 (360)
Q Consensus 276 ----------------------------------------~~~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i 314 (360)
.....++++|||+|||. .+|+++|+.+|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 00012467999999997 6999999999999999999999
Q ss_pred CCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 315 PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 315 ~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+.++ +|||||+|.++++|..|+..|||..|.|++|+|.+
T Consensus 309 ~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 309 MKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred EeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 8764 59999999999999999999999999999999975
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=283.98 Aligned_cols=248 Identities=23% Similarity=0.451 Sum_probs=218.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
+.||||++||+.++.++|.++|+.+|+|..|.++.++.++.++|||||.|.-.+++++|+..+++..+.|+.|+|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred c--------------------------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceE
Q 018159 186 K--------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFS 233 (360)
Q Consensus 186 ~--------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~ 233 (360)
+ .+|+|+|||+.+...+|..+|+.||. +..+.|++. ..++..|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 2 36999999999999999999999998 999999975 445555999
Q ss_pred EEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCCCCCccc------------------------------------
Q 018159 234 FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA------------------------------------ 277 (360)
Q Consensus 234 ~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------------------------------------ 277 (360)
||+|....+|..|+..+|+. .+.||++.|.|+.+........
T Consensus 162 FV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 99999999999999999755 7899999999997664221000
Q ss_pred ---------------------------------c---------------ccccceEEEcCCCCCCCHHHHHHHHhhcCCe
Q 018159 278 ---------------------------------A---------------ASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309 (360)
Q Consensus 278 ---------------------------------~---------------~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v 309 (360)
. ..-..+|||+|||+++|+++|.+.|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 0 0002789999999999999999999999999
Q ss_pred eEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhh-----CC-ceeCCeeEeEEeee
Q 018159 310 TKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT-----EK-YEIDGKSHLHFPVF 358 (360)
Q Consensus 310 ~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l-----ng-~~~~G~~l~v~p~~ 358 (360)
.++.|+.++.+. +|.|||.|.+..+|..||... .| ..+.||.|.|.+..
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAV 376 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeecc
Confidence 999998888765 999999999999999999987 24 78999999998764
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=7.3e-37 Score=294.88 Aligned_cols=243 Identities=22% Similarity=0.375 Sum_probs=199.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccC------------CcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCC
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPI------------GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~------------G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~ 171 (360)
+..++|||+|||+.+|+++|+.+|.+| +.|..+.+ ++.+|||||+|.+.++|..|| .|+|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 457899999999999999999999975 24444444 456899999999999999999 59999
Q ss_pred CCCCcEEEEeecC-----------------------------------cccceeecCCCCCCCHHHHHHHHHhhCCceeE
Q 018159 172 ELKGKTIRCSLSE-----------------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216 (360)
Q Consensus 172 ~~~g~~l~v~~~~-----------------------------------~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~ 216 (360)
.+.|+.|.|.... ..++|||+|||+.+++++|+++|+.||. |..
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~ 324 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKA 324 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeE
Confidence 9999999986321 1257999999999999999999999998 999
Q ss_pred EEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCCCCCc---------------------
Q 018159 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH--------------------- 275 (360)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------------- 275 (360)
+.++.+ ..++.++|||||+|.+...|..|+..|++. .+.|+.+.|.++........
T Consensus 325 ~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (509)
T TIGR01642 325 FNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSI 401 (509)
T ss_pred EEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccCCCCCCccccccccccccccccchhhh
Confidence 999988 568899999999999999999999999754 67888888888754321110
Q ss_pred -cccccccceEEEcCCCCCC----------CHHHHHHHHhhcCCeeEEEcCCCCC----C-CCCeEEEEeCCHHHHHHHH
Q 018159 276 -SAAASQVKALYVKNIPDNT----------STEKIKELFQRHGEVTKVVMPPGKS----G-KRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 276 -~~~~~~~~~l~V~nlp~~~----------t~~~L~~~f~~~G~v~~v~i~~~~~----~-~kg~afV~F~~~~~A~~A~ 339 (360)
.....++++|+|.|++..- ..++|+++|++||.|..|.|+.... + ..|+|||+|.+.++|.+|+
T Consensus 402 ~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~ 481 (509)
T TIGR01642 402 LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAM 481 (509)
T ss_pred ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHH
Confidence 0012356889999997421 1268999999999999999986521 1 2689999999999999999
Q ss_pred HhhCCceeCCeeEeEEee
Q 018159 340 KDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 340 ~~lng~~~~G~~l~v~p~ 357 (360)
..|||+.|+|+.|.+..+
T Consensus 482 ~~lnGr~~~gr~v~~~~~ 499 (509)
T TIGR01642 482 EGMNGRKFNDRVVVAAFY 499 (509)
T ss_pred HHcCCCEECCeEEEEEEe
Confidence 999999999999988654
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=7.6e-36 Score=281.39 Aligned_cols=161 Identities=22% Similarity=0.427 Sum_probs=145.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+++++|+.+|.+||.|.+|+++.++.+|+++|||||+|.+.+.|.+|+..|||..+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred Cc-----------------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHH
Q 018159 184 ET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (360)
Q Consensus 184 ~~-----------------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a 246 (360)
.. .++|||+|||..+++++|+.+|+.||. |..+++.++ ..+++++|||||.|.+.++|.+|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEec-CCCCCcCCeEEEEECCHHHHHHH
Confidence 31 258999999999999999999999998 999999998 46788999999999999999999
Q ss_pred HHHHhcCCcccCCCCceeeecC
Q 018159 247 RQKMLNANFKLDGNTPTISWAD 268 (360)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~ 268 (360)
+..+|+. .++|+.+.|.++.
T Consensus 263 I~amNg~--elgGr~LrV~kAi 282 (612)
T TIGR01645 263 IASMNLF--DLGGQYLRVGKCV 282 (612)
T ss_pred HHHhCCC--eeCCeEEEEEecC
Confidence 9999744 5567766665543
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7.3e-35 Score=276.63 Aligned_cols=233 Identities=17% Similarity=0.254 Sum_probs=196.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC--cEEEEeec
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLS 183 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 183 (360)
..+|||+||++.+|+++|+++|+.||.|.+|.+.++.. +|+|||+|.+.++|.+|+..|||..|.| +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 45799999999999999999999999999999887542 4789999999999999999999999864 35555443
Q ss_pred C-------------------------------------------------------------------------------
Q 018159 184 E------------------------------------------------------------------------------- 184 (360)
Q Consensus 184 ~------------------------------------------------------------------------------- 184 (360)
+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------cccceeecCCCC-CCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChH
Q 018159 185 ----------------------TKNRLFIGNVPK-NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (360)
Q Consensus 185 ----------------------~~~~l~v~nlp~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~ 241 (360)
+..+|||+|||. .++++.|+++|+.||. |..++++++ .+|+|||+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 124799999998 6999999999999998 999999886 3689999999999
Q ss_pred HHHHHHHHHhcCCcccCCCCceeeecCCCCCCCc-------------------------------cccccccceEEEcCC
Q 018159 242 CADYSRQKMLNANFKLDGNTPTISWADPKSTPDH-------------------------------SAAASQVKALYVKNI 290 (360)
Q Consensus 242 ~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------------~~~~~~~~~l~V~nl 290 (360)
+|..|+..|++. .+.|+.+.|.++........ .....++.+|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999865 56889999887644211000 001134679999999
Q ss_pred CCCCCHHHHHHHHhhcCC--eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018159 291 PDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 291 p~~~t~~~L~~~f~~~G~--v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
|..+++++|+++|+.||. |..|++.....+++|+|||+|.+.++|.+||..|||+.|.|+.
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 999999999999999998 8889887666556799999999999999999999999999885
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-35 Score=241.20 Aligned_cols=221 Identities=20% Similarity=0.379 Sum_probs=185.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...+||||+||...+|++-|..||++.|+|..|+++.+-. -|...+.. ....+....+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~--------~v~wa~~p-------~nQsk~t~~~------- 61 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL--------KVNWATAP-------GNQSKPTSNQ------- 61 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh--------ccccccCc-------ccCCCCcccc-------
Confidence 3568999999999999999999999999999999987621 00000000 0011111111
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCce
Q 018159 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
.--+||+.|...++.+.|++.|.+||+ |..+++++| ..+++++||+||.|.+..+|++|+..|++. -+++|.|+
T Consensus 62 --hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IR 135 (321)
T KOG0148|consen 62 --HFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIR 135 (321)
T ss_pred --ceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eeccceee
Confidence 124789999999999999999999999 999999999 689999999999999999999999999865 78999999
Q ss_pred eeecCCCCCCCcc----------ccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHH
Q 018159 264 ISWADPKSTPDHS----------AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333 (360)
Q Consensus 264 v~~~~~~~~~~~~----------~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~ 333 (360)
.+|+.++...... .....+++|||+||+..+|++.|++.|++||.|..||+.+++ |||||.|.+++
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q----GYaFVrF~tkE 211 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ----GYAFVRFETKE 211 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc----ceEEEEecchh
Confidence 9999987633221 112347899999999999999999999999999999999988 99999999999
Q ss_pred HHHHHHHhhCCceeCCeeEeEEe
Q 018159 334 SALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 334 ~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+|.+||..+||..+.|+.|+|.|
T Consensus 212 aAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEec
Confidence 99999999999999999999976
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.4e-35 Score=253.78 Aligned_cols=247 Identities=27% Similarity=0.500 Sum_probs=215.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC-CCC--cEEEEe
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKG--KTIRCS 181 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~-~~g--~~l~v~ 181 (360)
+..++||+.||..+++.+|+.+|.+||.|..|.+++|+.|+.++|||||.|.+.++|.+|+.+||+.. |-| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 45679999999999999999999999999999999999999999999999999999999999998754 554 678888
Q ss_pred ecCc-------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcC-
Q 018159 182 LSET-------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA- 253 (360)
Q Consensus 182 ~~~~-------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~- 253 (360)
++.. .++|||+-|++.+++.+++++|.+||. |..|.|.++ ..+.+||++||.|.+++.|..|++.||+.
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhccce
Confidence 8764 457899999999999999999999998 999999998 57889999999999999999999999875
Q ss_pred CcccCCCCceeeecCCCCCCCcccc-------------------------------------------------------
Q 018159 254 NFKLDGNTPTISWADPKSTPDHSAA------------------------------------------------------- 278 (360)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~------------------------------------------------------- 278 (360)
.+.....++.|.|+++.........
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 3455567788888877653220000
Q ss_pred --------------------------c--------------c---------c----------------------------
Q 018159 279 --------------------------A--------------S---------Q---------------------------- 281 (360)
Q Consensus 279 --------------------------~--------------~---------~---------------------------- 281 (360)
. . .
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence 0 0 0
Q ss_pred --------------------------------------------------------------------------cceEEE
Q 018159 282 --------------------------------------------------------------------------VKALYV 287 (360)
Q Consensus 282 --------------------------------------------------------------------------~~~l~V 287 (360)
...|||
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfi 429 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFI 429 (510)
T ss_pred ccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceee
Confidence 255999
Q ss_pred cCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 288 ~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.+||...-+.+|...|..||.|.+..+..++.++ ++|+||.|++..+|..||..|||+.+++++++|
T Consensus 430 yhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkV 498 (510)
T KOG0144|consen 430 YHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKV 498 (510)
T ss_pred eeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceE
Confidence 9999999999999999999999988777777666 999999999999999999999999999999886
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-31 Score=239.39 Aligned_cols=237 Identities=25% Similarity=0.448 Sum_probs=212.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCcc
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
..|||+ +++|+..|.++|+++|+|.+++++++. | +.|||||.|.++.+|.+||..+|...+.|++++|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358999 899999999999999999999999999 6 9999999999999999999999999999999999998754
Q ss_pred -cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceee
Q 018159 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 187 -~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
..+||.||+..++...|..+|+.||. |.+|++..+. .| ++|| ||+|.+...|.+|+..+|+. .+.+..+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~~--~g-~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATDE--NG-SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEcC--CC-ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEe
Confidence 45899999999999999999999999 9999999973 33 8999 99999999999999999865 5678888887
Q ss_pred ecCCCCCCCccc--cccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhh
Q 018159 266 WADPKSTPDHSA--AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 266 ~~~~~~~~~~~~--~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l 342 (360)
...+........ ....-..++|.|++..++...|..+|+.+|.|.++.++.+..+. +|||||.|.++++|..|+..|
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhc
Confidence 776654332211 23445789999999999999999999999999999999888776 999999999999999999999
Q ss_pred CCceeCCeeEeEEe
Q 018159 343 EKYEIDGKSHLHFP 356 (360)
Q Consensus 343 ng~~~~G~~l~v~p 356 (360)
|+..+.|+.+.|.+
T Consensus 229 ~~~~~~~~~~~V~~ 242 (369)
T KOG0123|consen 229 NGKIFGDKELYVGR 242 (369)
T ss_pred cCCcCCccceeecc
Confidence 99999998888765
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.7e-30 Score=234.78 Aligned_cols=245 Identities=28% Similarity=0.485 Sum_probs=212.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+...|||.||++.++...|.++|+.||.|.+|++..+.. | ++|| ||+|.+.+.|.+|+..+||..+.|+.|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 344499999999999999999999999999999999886 5 9999 999999999999999999999999999996654
Q ss_pred c--------------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHH
Q 018159 185 T--------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250 (360)
Q Consensus 185 ~--------------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~ 250 (360)
. -..+++.|++...++..|..+|..+|. +..+.++.+ ..+.+++|+||.|.+.+.|..|+..+
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhc
Confidence 3 256899999999999999999999998 999999996 56679999999999999999999999
Q ss_pred hcCCcccCCCCceeeecCCCCCCC------------ccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC
Q 018159 251 LNANFKLDGNTPTISWADPKSTPD------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK 318 (360)
Q Consensus 251 ~~~~~~~~~~~~~v~~~~~~~~~~------------~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~ 318 (360)
++..+. +..+.+..+....... ..........|+|.||+..++.+.|+.+|+.||.|.+++|+.+.
T Consensus 229 ~~~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 229 NGKIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred cCCcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 877543 5666665555432111 11113446789999999999999999999999999999998887
Q ss_pred CCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 319 SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 319 ~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+. +|||||.|.+.++|.+|+..+||..+.|+.|.|.+.
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~ 346 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVA 346 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHH
Confidence 776 999999999999999999999999999998887653
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=4.1e-30 Score=231.22 Aligned_cols=168 Identities=23% Similarity=0.441 Sum_probs=155.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|++..+.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCc------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcc
Q 018159 183 SET------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256 (360)
Q Consensus 183 ~~~------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~ 256 (360)
+.+ ..+|||+|||..+++++|+++|.+||. |..++++++ ..+++++|||||+|.+.++|.+|+..|++..+.
T Consensus 184 a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~-V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 184 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ-IVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ccccccccccceeEEeCCCCcccHHHHHHHHHhcCC-EEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 764 467999999999999999999999998 999999988 678999999999999999999999999987666
Q ss_pred cCCCCceeeecCCCCC
Q 018159 257 LDGNTPTISWADPKST 272 (360)
Q Consensus 257 ~~~~~~~v~~~~~~~~ 272 (360)
..++.+.|.++.....
T Consensus 262 g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 262 GGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCceeEEEEECCcccc
Confidence 6667888988876543
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=217.03 Aligned_cols=246 Identities=20% Similarity=0.387 Sum_probs=203.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC-
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE- 184 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~- 184 (360)
-++|||+.|.+.+.++.|+..|.+||+|+++.+.-++.|++.+|||||+|.-++.|+.|++.|||..++||.|+|.+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred ----------------cccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHH
Q 018159 185 ----------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248 (360)
Q Consensus 185 ----------------~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~ 248 (360)
.-+++||..++...++.+|+..|+.||+ |..|.+.+.| ..+..+||||++|.+..+...|+.
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeeccC-CCCCccceeeEEeccccchHHHhh
Confidence 2378999999999999999999999999 9999999985 456789999999999999999998
Q ss_pred HHhcCCcccCCCCceeeecCCCCCCC------------------------------------------------------
Q 018159 249 KMLNANFKLDGNTPTISWADPKSTPD------------------------------------------------------ 274 (360)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~~~~~~~~~------------------------------------------------------ 274 (360)
.+| -+.++|..++|..+..+...-
T Consensus 271 sMN--lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 271 SMN--LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hcc--hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 775 445666655554322111000
Q ss_pred ---------------------cccc-------------------------------------------------------
Q 018159 275 ---------------------HSAA------------------------------------------------------- 278 (360)
Q Consensus 275 ---------------------~~~~------------------------------------------------------- 278 (360)
+..+
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence 0000
Q ss_pred --------------ccccceEEEcCC--CCCCCH---HHHHHHHhhcCCeeEEEcCCCCCCC------CCeEEEEeCCHH
Q 018159 279 --------------ASQVKALYVKNI--PDNTST---EKIKELFQRHGEVTKVVMPPGKSGK------RDFGFIHYAERS 333 (360)
Q Consensus 279 --------------~~~~~~l~V~nl--p~~~t~---~~L~~~f~~~G~v~~v~i~~~~~~~------kg~afV~F~~~~ 333 (360)
...++.+.++|. |.++++ .+|++.|++||.|.+|.|...+.+. ---.||+|....
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 000466888885 566655 6889999999999999998877654 113599999999
Q ss_pred HHHHHHHhhCCceeCCeeEeEE
Q 018159 334 SALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 334 ~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.+.+|...|+|++|+||++...
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE 530 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAE 530 (544)
T ss_pred HHHHHHHhhccceecCceeehh
Confidence 9999999999999999998743
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.7e-30 Score=229.53 Aligned_cols=234 Identities=23% Similarity=0.407 Sum_probs=193.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.-+|.|+||||.+...+|+.+|+.||.|..|.|++.+. |+..|||||.|....+|..||..+|+..|.||+|-|.||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 56899999999999999999999999999999998877 55559999999999999999999999999999999999854
Q ss_pred c-------------------------------------------------------------------------------
Q 018159 186 K------------------------------------------------------------------------------- 186 (360)
Q Consensus 186 ~------------------------------------------------------------------------------- 186 (360)
+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 2
Q ss_pred -----------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHH
Q 018159 187 -----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (360)
Q Consensus 187 -----------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 249 (360)
.++||+|||+.++++.|.+.|++||+ |..+.++.+ ..+++++|.|||.|.+...+..|+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHh
Confidence 36999999999999999999999998 999999999 68999999999999999999999988
Q ss_pred Hh---cCC-cccCCCCceeeecCCCCCCCc--------------------------------------------------
Q 018159 250 ML---NAN-FKLDGNTPTISWADPKSTPDH-------------------------------------------------- 275 (360)
Q Consensus 250 ~~---~~~-~~~~~~~~~v~~~~~~~~~~~-------------------------------------------------- 275 (360)
.. +.+ +.+.||.+.+..+.+......
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 72 233 678888888877765431110
Q ss_pred -----cccccccceEEEcCCCCCCCHHHHHHHHhh----c-CCee-EEEcCCC-----CCCCCCeEEEEeCCHHHHHHHH
Q 018159 276 -----SAAASQVKALYVKNIPDNTSTEKIKELFQR----H-GEVT-KVVMPPG-----KSGKRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 276 -----~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~----~-G~v~-~v~i~~~-----~~~~kg~afV~F~~~~~A~~A~ 339 (360)
+......++|.|+|||..+++..|..++.+ | +.+. -++.+.. ++.+.||+|+.|..++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 000111467999999999999999888754 2 2332 2233222 3344899999999999999999
Q ss_pred Hhh
Q 018159 340 KDT 342 (360)
Q Consensus 340 ~~l 342 (360)
+.+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 965
No 20
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=226.83 Aligned_cols=246 Identities=21% Similarity=0.326 Sum_probs=204.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..+.|+|+|||..+..+.|..+|..||.|.++.++.. |. .|+|+|.++.+|.+|+..|....+...++.+.|+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 45689999999999999999999999999999966532 22 4999999999999999999988777666665554
Q ss_pred Ccc--------------------------------------------------------cceeecCCCCCCCHHHHHHHH
Q 018159 184 ETK--------------------------------------------------------NRLFIGNVPKNWTEDEFRKVI 207 (360)
Q Consensus 184 ~~~--------------------------------------------------------~~l~v~nlp~~~~~~~l~~~f 207 (360)
+.. ++||+.||++..+.+.+...|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 210 249999999999999999999
Q ss_pred HhhCCceeEEEEeeCC--CCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCC--CCC-cccccccc
Q 018159 208 EDVGPGVETIELIKDP--QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--TPD-HSAAASQV 282 (360)
Q Consensus 208 ~~~g~~i~~~~~~~~~--~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~~~~~~~~ 282 (360)
...|. |.++.|...+ .....+.|||||+|.+..+|..|++.|++. .+.|+.+.+.++.... ... ........
T Consensus 537 ~k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 537 SKQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HhcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEeccCcccccccccccccccc
Confidence 99998 8888876553 234567899999999999999999999754 7889999999887221 111 11122235
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
+.|+|+|||+..+-.+++++|..||.|..|+||...... +|||||+|-++..|.+|+.+|.++.+.||+|.+.|..
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 789999999999999999999999999999999873333 9999999999999999999999999999999988753
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=8.1e-28 Score=216.38 Aligned_cols=163 Identities=18% Similarity=0.379 Sum_probs=144.3
Q ss_pred cccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCcee
Q 018159 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
..++|||+|||+.+++++|+++|..+|. |..++++++ ..+++++|||||+|.+.++|.+|+..|++. .+.++.+.+
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~-V~~v~i~~d-~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~--~l~gr~i~V 181 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGP-INTCRIMRD-YKTGYSFGYAFVDFGSEADSQRAIKNLNGI--TVRNKRLKV 181 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCccCcEEEEEEccHHHHHHHHHHcCCC--ccCCceeee
Confidence 4679999999999999999999999998 999999998 578999999999999999999999998754 668899999
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhh
Q 018159 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l 342 (360)
.|+.+.... ...++|||+|||..+|+++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+||+.|
T Consensus 182 ~~a~p~~~~------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 182 SYARPGGES------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred ecccccccc------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 998764322 235689999999999999999999999999999998776433 899999999999999999999
Q ss_pred CCceeCC--eeEeEEee
Q 018159 343 EKYEIDG--KSHLHFPV 357 (360)
Q Consensus 343 ng~~~~G--~~l~v~p~ 357 (360)
|+..+.| ++|+|+..
T Consensus 256 ng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLA 272 (346)
T ss_pred CCCccCCCceeEEEEEC
Confidence 9999876 67777643
No 22
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=8.1e-29 Score=222.76 Aligned_cols=250 Identities=25% Similarity=0.389 Sum_probs=209.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
..+..+|+|+-.|+..++.-+|..||+.+|+|..|+++.+..+++++|.|||+|.+.+....|+ .|.|..+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 3356789999999999999999999999999999999999999999999999999999999999 699999999999997
Q ss_pred ecCc--------------------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChH
Q 018159 182 LSET--------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (360)
Q Consensus 182 ~~~~--------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~ 241 (360)
.... -.+||++||++++++..|+.+|++||. |..+.+.++ ..+|+++||||++|.+..
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKE 331 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHH
Confidence 7532 134899999999999999999999998 999999998 569999999999999999
Q ss_pred HHHHHHHHHhcCCcccCCCCceeeecCCCCCCC-----------------------------------------------
Q 018159 242 CADYSRQKMLNANFKLDGNTPTISWADPKSTPD----------------------------------------------- 274 (360)
Q Consensus 242 ~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------------------------------------- 274 (360)
.|.+|+..||+ +.+-|+.+.|..........
T Consensus 332 ~ar~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l 409 (549)
T KOG0147|consen 332 DARKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISAL 409 (549)
T ss_pred HHHHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHH
Confidence 99999999986 78888887664322111000
Q ss_pred -------------------ccccc-------cccceEEEcCCC--CCCCH--------HHHHHHHhhcCCeeEEEcCCCC
Q 018159 275 -------------------HSAAA-------SQVKALYVKNIP--DNTST--------EKIKELFQRHGEVTKVVMPPGK 318 (360)
Q Consensus 275 -------------------~~~~~-------~~~~~l~V~nlp--~~~t~--------~~L~~~f~~~G~v~~v~i~~~~ 318 (360)
...+. .++.++.++|+= ...|+ +++.+.|.+||+|..|.+.++.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns 489 (549)
T KOG0147|consen 410 LLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS 489 (549)
T ss_pred HhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC
Confidence 00001 234566667753 33332 6888999999999999998776
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018159 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 319 ~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
. |+.||.|.+.+.|..|++.|||++|.||.|...-+.+
T Consensus 490 ~---g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 490 A---GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred C---ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 4 8999999999999999999999999999999876543
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=1.5e-27 Score=225.38 Aligned_cols=168 Identities=21% Similarity=0.441 Sum_probs=146.0
Q ss_pred ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceee
Q 018159 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.++|||+|||+.+++++|+++|.+||. |..++++++ ..+++++|||||.|.+.++|.+|+..+++ ..+.|+.+.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG--~~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCC--eEEecceeeec
Confidence 468999999999999999999999998 999999998 57899999999999999999999999875 46789999988
Q ss_pred ecCCCCCCCc-----cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHH
Q 018159 266 WADPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKA 338 (360)
Q Consensus 266 ~~~~~~~~~~-----~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A 338 (360)
+......... .......++|||+|||..+++++|+++|+.||.|.+++|+.++.++ ||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 6543321111 1112345799999999999999999999999999999999876543 99999999999999999
Q ss_pred HHhhCCceeCCeeEeEEee
Q 018159 339 VKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 339 ~~~lng~~~~G~~l~v~p~ 357 (360)
+..|||+.|+|+.|+|.+.
T Consensus 263 I~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred HHHhCCCeeCCeEEEEEec
Confidence 9999999999999999754
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=7.7e-26 Score=208.31 Aligned_cols=163 Identities=23% Similarity=0.474 Sum_probs=147.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC--cEEEEee
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~ 182 (360)
..++|||+|||+.+++++|+.+|++||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..+.| ++|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998889999999999999999999999999998877 5677766
Q ss_pred cCcc----------------------------------------------------------------------------
Q 018159 183 SETK---------------------------------------------------------------------------- 186 (360)
Q Consensus 183 ~~~~---------------------------------------------------------------------------- 186 (360)
+...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 5311
Q ss_pred ----------------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHH
Q 018159 187 ----------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (360)
Q Consensus 187 ----------------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (360)
.+|||+|||+.+++++|+++|++||. |..++++++ ..++.++|||||.|.+.++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~-v~~v~i~~d-~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGA-VQNVKIIRD-LTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCC-eEEEEEeEc-CCCCCccceEEEEECCHHHHH
Confidence 14999999999999999999999998 999999998 578999999999999999999
Q ss_pred HHHHHHhcCCcccCCCCceeeecCCCC
Q 018159 245 YSRQKMLNANFKLDGNTPTISWADPKS 271 (360)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~ 271 (360)
+|+..|++. .+.|+.|.|.|...+.
T Consensus 326 ~Ai~~lnG~--~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 326 MAILSLNGY--TLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHhCCC--EECCeEEEEEEccCCC
Confidence 999999864 6799999999987653
No 25
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=7e-25 Score=191.55 Aligned_cols=144 Identities=26% Similarity=0.462 Sum_probs=128.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcc-CCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..+.+||.|||+++.+.+|++||+. .|.|..|.++.+.. |+++|+|.|+|++++.+++|++.||.+.+.||+|.|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4456999999999999999999965 78999999999875 999999999999999999999999999999999999653
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 018159 184 ETK----------------------------------------------------------------------------- 186 (360)
Q Consensus 184 ~~~----------------------------------------------------------------------------- 186 (360)
...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 210
Q ss_pred --------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhc
Q 018159 187 --------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (360)
Q Consensus 187 --------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~ 252 (360)
.++||.||.+.+....|.+.|.-.|. +..+.+--+ ..+.++|++.++|.++-.|-.|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 35789999999999999999999998 999988776 3568899999999999999999988764
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.2e-25 Score=185.03 Aligned_cols=159 Identities=30% Similarity=0.583 Sum_probs=147.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
..-+||+.|...++-+.|++.|.+||.|..+++++|..|+++||||||.|.++++|..||..|||.=|.+|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred c----------------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHH
Q 018159 186 K----------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (360)
Q Consensus 186 ~----------------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a 243 (360)
+ +++|++|++..++++.+++.|.+||. |..||+.++ +||+||.|.+.++|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhH
Confidence 2 58999999999999999999999998 999999987 78999999999999
Q ss_pred HHHHHHHhcCCcccCCCCceeeecCCCCCCC
Q 018159 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPD 274 (360)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 274 (360)
.+|+-.+|+. .+.|..+++.|-.......
T Consensus 214 ahAIv~mNnt--ei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 214 AHAIVQMNNT--EIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HHHHHHhcCc--eeCceEEEEeccccCCCCC
Confidence 9999999866 6789999999987765443
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=6.6e-25 Score=208.94 Aligned_cols=169 Identities=18% Similarity=0.359 Sum_probs=144.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCce
Q 018159 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
...++|||+|||..+++.+|+++|..+|. |..++++.+ ..+++++|||||+|.+.++|.+|+. ++ +..+.|+.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~--g~~~~g~~i~ 161 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LT--GQMLLGRPII 161 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hC--CCEECCeeeE
Confidence 34678999999999999999999999997 999999998 6789999999999999999999986 44 4467788888
Q ss_pred eeecCCCCCCCc------cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHH
Q 018159 264 ISWADPKSTPDH------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSA 335 (360)
Q Consensus 264 v~~~~~~~~~~~------~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A 335 (360)
+.+......... .......++|||+|||..+++++|+++|++||.|..|.|+.+..+ . +|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 877543321111 111123689999999999999999999999999999999877654 3 89999999999999
Q ss_pred HHHHHhhCCceeCCeeEeEEee
Q 018159 336 LKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 336 ~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+|+..|||..|.|++|.|.+.
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEc
Confidence 9999999999999999999763
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=5.6e-24 Score=201.06 Aligned_cols=196 Identities=20% Similarity=0.344 Sum_probs=162.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEEe-eCCCCCCcceEEEEEecCHHHHHHHHHHhcC--CCCCCcEEE
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLM-KDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~-~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (360)
...++|||+|||+.+|+++|.++|++++ .+..+.+. ....+++++|||||+|.+.++|..|+..|+. ..+.|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 3468999999999999999999999986 34444333 3334578899999999999999999988754 457899999
Q ss_pred EeecCcc-----------cceeecCCCCCCCHHHHHHHHHhh--CCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHH
Q 018159 180 CSLSETK-----------NRLFIGNVPKNWTEDEFRKVIEDV--GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (360)
Q Consensus 180 v~~~~~~-----------~~l~v~nlp~~~~~~~l~~~f~~~--g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a 246 (360)
|.++.+. ++|||+|||..+++++|+++|+.| |. |..+.+++ +||||+|.+.++|.+|
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~-I~rV~~~r---------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK-VERVKKIR---------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc-eEEEEeec---------CeEEEEeCCHHHHHHH
Confidence 9988653 569999999999999999999999 97 88887754 4999999999999999
Q ss_pred HHHHhcCCcccCCCCceeeecCCCCCCCc----------------------cccccccceEEEcCCCCCCCHHHHHHHHh
Q 018159 247 RQKMLNANFKLDGNTPTISWADPKSTPDH----------------------SAAASQVKALYVKNIPDNTSTEKIKELFQ 304 (360)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~~~~l~V~nlp~~~t~~~L~~~f~ 304 (360)
+..+++. .+.|+.+.|.|+.|...... ......+.++++.|+|+..+..-+..+|.
T Consensus 286 i~~lnG~--~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~ 363 (578)
T TIGR01648 286 MDELNGK--ELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPR 363 (578)
T ss_pred HHHhCCC--EECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccc
Confidence 9998765 67999999999987543200 01122468999999999999999999999
Q ss_pred hcCCeeE
Q 018159 305 RHGEVTK 311 (360)
Q Consensus 305 ~~G~v~~ 311 (360)
.+|.|..
T Consensus 364 ~~g~~~~ 370 (578)
T TIGR01648 364 MPGPIRG 370 (578)
T ss_pred cCccccC
Confidence 9998663
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.3e-24 Score=188.24 Aligned_cols=162 Identities=24% Similarity=0.468 Sum_probs=138.8
Q ss_pred cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCC--Ccee
Q 018159 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN--TPTI 264 (360)
Q Consensus 187 ~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~--~~~v 264 (360)
-++||+.+|..|++.+|+.+|++||. |..|.+++| +.++.++|+|||.|.++.+|.+|+.++++.. .+.|. ++.+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~k-tlpG~~~pvqv 111 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQK-TLPGMHHPVQV 111 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhccc-ccCCCCcceee
Confidence 36999999999999999999999998 999999999 7899999999999999999999999998754 34444 4455
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhC
Q 018159 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~ln 343 (360)
.+++...... ...++|||+-|+..+|+.+++.+|++||.|++++|.++..+. ||||||+|.+.+.|..|++.||
T Consensus 112 k~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 112 KYADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred cccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhc
Confidence 5665543321 335689999999999999999999999999999999998877 9999999999999999999999
Q ss_pred Cc-eeCCe--eEeEEe
Q 018159 344 KY-EIDGK--SHLHFP 356 (360)
Q Consensus 344 g~-~~~G~--~l~v~p 356 (360)
|. ++.|. +|.|++
T Consensus 187 g~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKF 202 (510)
T ss_pred cceeeccCCCceEEEe
Confidence 85 56654 455554
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=9.6e-24 Score=164.09 Aligned_cols=167 Identities=26% Similarity=0.411 Sum_probs=150.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
...||||+||+..+++.-|.++|-+.|+|.++++++++.+...+||||++|.+.++|..|++-||+..+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred c-------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCccc
Q 018159 185 T-------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257 (360)
Q Consensus 185 ~-------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~ 257 (360)
. ..++||+||.+.+++..|...|+.+|.-+..-.++++ ..++.++|+||+-|.+.+.+..|+..+++. .+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~ngq--~l 164 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSMNGQ--YL 164 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHhccc--hh
Confidence 2 2579999999999999999999999985666677887 578999999999999999999999999865 66
Q ss_pred CCCCceeeecCCCCCCC
Q 018159 258 DGNTPTISWADPKSTPD 274 (360)
Q Consensus 258 ~~~~~~v~~~~~~~~~~ 274 (360)
..+++.+.++-......
T Consensus 165 ~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDTKG 181 (203)
T ss_pred cCCceEEEEEEecCCCc
Confidence 78888988877665443
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.2e-23 Score=170.63 Aligned_cols=157 Identities=25% Similarity=0.482 Sum_probs=140.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCce
Q 018159 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
..+..|.|.-||..+|+++++.+|...|+ |.+|+++|| +.+|.+-||+||-|.++.+|.+|+..+| ++++..+.|.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlN--GLrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLN--GLRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhc--ceeeccceEE
Confidence 34578999999999999999999999999 999999999 7999999999999999999999999997 5688999999
Q ss_pred eeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHh
Q 018159 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~ 341 (360)
|.|+.|.... .....|||++||..+|..+|.++|++||.|..-+|..+.-+. ||.|||.|+....|..|++.
T Consensus 115 VSyARPSs~~------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSDS------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChhh------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 9999997654 334579999999999999999999999999877766555443 99999999999999999999
Q ss_pred hCCceeCCe
Q 018159 342 TEKYEIDGK 350 (360)
Q Consensus 342 lng~~~~G~ 350 (360)
|||.+--|.
T Consensus 189 lNG~~P~g~ 197 (360)
T KOG0145|consen 189 LNGQKPSGC 197 (360)
T ss_pred ccCCCCCCC
Confidence 999876654
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.6e-22 Score=195.21 Aligned_cols=162 Identities=20% Similarity=0.363 Sum_probs=139.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.+.|..|+..|+|..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred c----------------------------------ccceeecCCCCCC----------CHHHHHHHHHhhCCceeEEEEe
Q 018159 185 T----------------------------------KNRLFIGNVPKNW----------TEDEFRKVIEDVGPGVETIELI 220 (360)
Q Consensus 185 ~----------------------------------~~~l~v~nlp~~~----------~~~~l~~~f~~~g~~i~~~~~~ 220 (360)
. ...|++.|+.... ..++|+++|.+||. |..|.|+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~-v~~v~i~ 452 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP-LINIVIP 452 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC-eeEEEee
Confidence 1 2346777875431 13578999999998 9999998
Q ss_pred eCC--CCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCC
Q 018159 221 KDP--QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269 (360)
Q Consensus 221 ~~~--~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~ 269 (360)
+.. ..++.+.|++||.|.+.++|.+|+..|++. .+.|+.+.+.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr--~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR--KFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEeCH
Confidence 752 234567899999999999999999999876 56889888887654
No 33
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=7.8e-23 Score=189.24 Aligned_cols=220 Identities=25% Similarity=0.367 Sum_probs=174.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
....+|||+|||+.+++++|+.+| |||.|..+..|.+|...+++..+.||-|+|.+.
T Consensus 225 ~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~ 281 (725)
T KOG0110|consen 225 SETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPS 281 (725)
T ss_pred HhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCc
Confidence 356789999999999999999997 899999999999999999999999999998664
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 018159 184 ETK----------------------------------------------------------------------------- 186 (360)
Q Consensus 184 ~~~----------------------------------------------------------------------------- 186 (360)
...
T Consensus 282 ~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~ 361 (725)
T KOG0110|consen 282 KEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVV 361 (725)
T ss_pred chhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhc
Confidence 321
Q ss_pred ------------------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHH
Q 018159 187 ------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNAC 242 (360)
Q Consensus 187 ------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~ 242 (360)
+.++++|||..+..+.+..+|..||. |..+.+++ ....++|.|.++.+
T Consensus 362 ~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp~-------~G~~aiv~fl~p~e 433 (725)
T KOG0110|consen 362 QEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLPP-------GGTGAIVEFLNPLE 433 (725)
T ss_pred hhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecCc-------ccceeeeeecCccc
Confidence 24789999999999999999999998 88885432 22348999999999
Q ss_pred HHHHHHHHhcCCcccCCCCceeeecCCCCCC-------C----c---------------------c------------cc
Q 018159 243 ADYSRQKMLNANFKLDGNTPTISWADPKSTP-------D----H---------------------S------------AA 278 (360)
Q Consensus 243 a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~----~---------------------~------------~~ 278 (360)
|.+|++.+....+ ...++++.|+...-.. . . . ..
T Consensus 434 Ar~Afrklaysr~--k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~ 511 (725)
T KOG0110|consen 434 ARKAFRKLAYSRF--KSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAED 511 (725)
T ss_pred hHHHHHHhchhhh--ccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhc
Confidence 9999998865432 2333333332211100 0 0 0 00
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-----CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-----RDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-----kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
....++|||+||++.+|.++|...|.+.|.|.++.|...+... .|||||+|.+.++|.+|++.|+|+.++|+.|.
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 0012339999999999999999999999999999887665442 69999999999999999999999999999999
Q ss_pred EEe
Q 018159 354 HFP 356 (360)
Q Consensus 354 v~p 356 (360)
|+-
T Consensus 592 lk~ 594 (725)
T KOG0110|consen 592 LKI 594 (725)
T ss_pred EEe
Confidence 864
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.1e-22 Score=167.27 Aligned_cols=247 Identities=21% Similarity=0.370 Sum_probs=155.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC-CCC--cEEEE
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKG--KTIRC 180 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~-~~g--~~l~v 180 (360)
.+.++|||+.|...-.+++++.+|.+||.|..|.+++.+. |.+||+|||.|.+.-+|+.||..|||.. +-| ..|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 3567899999999999999999999999999999999887 9999999999999999999999999854 444 57888
Q ss_pred eecCccc---------------------------------------ceeecC----CCCCCCH----HHHHHHHHhhCC-
Q 018159 181 SLSETKN---------------------------------------RLFIGN----VPKNWTE----DEFRKVIEDVGP- 212 (360)
Q Consensus 181 ~~~~~~~---------------------------------------~l~v~n----lp~~~~~----~~l~~~f~~~g~- 212 (360)
.++...+ .+...+ |...++. -+....+.-.|-
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 8886541 001111 1111110 111111111110
Q ss_pred --ceeEEEEeeCC------CCCCCC-----cce-EEEEecChHHHHHHHHHHhcCCccc-CCCCcee-------------
Q 018159 213 --GVETIELIKDP------QNPSRN-----RGF-SFVLYYNNACADYSRQKMLNANFKL-DGNTPTI------------- 264 (360)
Q Consensus 213 --~i~~~~~~~~~------~~~~~~-----~g~-~~v~f~~~~~a~~a~~~~~~~~~~~-~~~~~~v------------- 264 (360)
.|....-...+ ...+.+ .|| +...+.+..-+..++-. +++.. ......+
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~---ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYA---NGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhh---cCCccCCCCCccccchhhhhhhhHHH
Confidence 00000000000 000111 111 11222232222222211 11100 0000000
Q ss_pred --------------eecC-CCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEE
Q 018159 265 --------------SWAD-PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFI 327 (360)
Q Consensus 265 --------------~~~~-~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV 327 (360)
.+.. |.............+.|||..||..+.+.+|.++|-+||.|.+.++..++.++ |+||||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 0000 01111122334557999999999999999999999999999988777666555 999999
Q ss_pred EeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 328 HYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 328 ~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.|+++.+|+.||..|||++|+-|+|+|
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 999999999999999999999998876
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=4.3e-22 Score=154.96 Aligned_cols=164 Identities=18% Similarity=0.299 Sum_probs=142.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCce
Q 018159 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
....+||++||+..++++.|+++|-+.|+ |..+.++++ +-+...+||||++|.+.++|.-|++.++ ..++.|++|.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagp-Vv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikiln--~VkLYgrpIr 82 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGP-VVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKILN--MVKLYGRPIR 82 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCc-eeeeecchh-hhcccccceeEEEEechhhhHHHHHHHH--HHHhcCceeE
Confidence 34679999999999999999999999998 999999999 7788899999999999999999999998 6789999999
Q ss_pred eeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EcCCCCCCC--CCeEEEEeCCHHHHHHHHH
Q 018159 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK--RDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~~--kg~afV~F~~~~~A~~A~~ 340 (360)
+..+....... ..+..|||+||.+.+++..|.+.|+.||.+... .|+++..++ +|||||.|.+.+.+.+|+.
T Consensus 83 v~kas~~~~nl-----~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 83 VNKASAHQKNL-----DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred EEecccccccc-----cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 99887332222 233689999999999999999999999988763 444444432 8999999999999999999
Q ss_pred hhCCceeCCeeEeEEe
Q 018159 341 DTEKYEIDGKSHLHFP 356 (360)
Q Consensus 341 ~lng~~~~G~~l~v~p 356 (360)
+|||..++.++|.|--
T Consensus 158 s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 158 SMNGQYLCNRPITVSY 173 (203)
T ss_pred HhccchhcCCceEEEE
Confidence 9999999999998754
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=5.2e-21 Score=168.16 Aligned_cols=182 Identities=25% Similarity=0.382 Sum_probs=147.6
Q ss_pred cCHHHHHHHHHHhcCCCCCCcEEEEeecCc----------------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEE
Q 018159 156 RSKEFAKKAIDELHSKELKGKTIRCSLSET----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219 (360)
Q Consensus 156 ~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~----------------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~ 219 (360)
.+.+.|.++|..-. |..|.|...+. .+-+||+.||..+.+++|.-+|+..|+ |..+|+
T Consensus 42 ~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRL 115 (506)
T KOG0117|consen 42 QSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELRL 115 (506)
T ss_pred ccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeEEE
Confidence 34677777775433 34455543322 267999999999999999999999999 999999
Q ss_pred eeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHH
Q 018159 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKI 299 (360)
Q Consensus 220 ~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L 299 (360)
+++ +.+|.+||||||.|.+.+.|+.|++.||+..++ .|+.|.|..+ ..+++|||+|||.+.+.++|
T Consensus 116 MmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~S------------van~RLFiG~IPK~k~keeI 181 (506)
T KOG0117|consen 116 MMD-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVS------------VANCRLFIGNIPKTKKKEEI 181 (506)
T ss_pred eec-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEe------------eecceeEeccCCccccHHHH
Confidence 999 578999999999999999999999999977654 6777776655 33579999999999999999
Q ss_pred HHHHhhcC-CeeEEEcCC---CCCCCCCeEEEEeCCHHHHHHHHHhhC--CceeCCeeEeEEee
Q 018159 300 KELFQRHG-EVTKVVMPP---GKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGKSHLHFPV 357 (360)
Q Consensus 300 ~~~f~~~G-~v~~v~i~~---~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~~~G~~l~v~p~ 357 (360)
.+.|++.+ .|..|.+.. ++..+||||||+|.+|..|..|-+.|- .+++.|+.+.|-|.
T Consensus 182 lee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWA 245 (506)
T KOG0117|consen 182 LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWA 245 (506)
T ss_pred HHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeecc
Confidence 99999987 566666643 344449999999999999999998876 35778998888763
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.86 E-value=2.9e-20 Score=150.69 Aligned_cols=205 Identities=17% Similarity=0.312 Sum_probs=148.5
Q ss_pred CCEEEEcCCCCCCCHHHHHH----hhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 106 GSEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~----~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
..||||+||+..+..++|+. +|++||.|..|..++. .+.+|.|||.|.+.+.|..|+..|+|..+.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999888 9999999999988865 6789999999999999999999999999999999999
Q ss_pred ecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCC
Q 018159 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (360)
Q Consensus 182 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (360)
+|..++.++.+--+..+.. +......++.+.+ ... ..++.........
T Consensus 86 yA~s~sdii~~~~~~~v~~----------~~k~~~~~~~~~~-~~~---------------------~~ng~~~~~~~~~ 133 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEK----------EKKINGEILARIK-QPL---------------------DTNGHFYNMNRMN 133 (221)
T ss_pred cccCccchhhccCceeccc----------cCccccccccccC-Ccc---------------------ccccccccccccc
Confidence 9998776654321111100 0001111111110 000 0010000000000
Q ss_pred ceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018159 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
+ ..+. . .....+..+||+.|||..++.+.|..+|.+|...+.|++..... +.|||+|.+...|..|...
T Consensus 134 ~----p~p~---~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~---~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 134 L----PPPF---L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS---GIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred C----CCCc---c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC---ceeEEecchhhhhHHHhhh
Confidence 0 0000 1 23346778999999999999999999999999999999987663 8999999999999999999
Q ss_pred hCCceeC-CeeEeEEe
Q 018159 342 TEKYEID-GKSHLHFP 356 (360)
Q Consensus 342 lng~~~~-G~~l~v~p 356 (360)
++|..+- ...+.+..
T Consensus 203 lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 203 LQGFKITKKNTMQITF 218 (221)
T ss_pred hccceeccCceEEecc
Confidence 9999887 66666643
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=3.1e-21 Score=160.65 Aligned_cols=147 Identities=31% Similarity=0.555 Sum_probs=135.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCcc
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
.+|||+|||..+++.+|+.+|++||+|..|-|+++ ||||...+...|.-|+..||+..|+|..|+|..++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999976 8999999999999999999999999999999987765
Q ss_pred ----cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCc
Q 018159 187 ----NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (360)
Q Consensus 187 ----~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~ 262 (360)
.+|+|+|+.+.++.++|+..|++||+ +..+.|+++ |+||+|.-..+|..|++.|++. .+.|+++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygp-viecdivkd---------y~fvh~d~~eda~~air~l~~~--~~~gk~m 142 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGP-VIECDIVKD---------YAFVHFDRAEDAVEAIRGLDNT--EFQGKRM 142 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCC-ceeeeeecc---------eeEEEEeeccchHHHHhccccc--cccccee
Confidence 67999999999999999999999998 999999887 9999999999999999999866 6789999
Q ss_pred eeeecCCCCCC
Q 018159 263 TISWADPKSTP 273 (360)
Q Consensus 263 ~v~~~~~~~~~ 273 (360)
.|+.+......
T Consensus 143 ~vq~stsrlrt 153 (346)
T KOG0109|consen 143 HVQLSTSRLRT 153 (346)
T ss_pred eeeeecccccc
Confidence 99887765443
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=6.1e-21 Score=158.95 Aligned_cols=143 Identities=25% Similarity=0.479 Sum_probs=131.9
Q ss_pred cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeee
Q 018159 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
..|||+|||...+..+|+.+|++||+ |..|.|+++ ||||+..+...+.-|+..|+ .+.+.|..|.|..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk-VlECDIvKN---------YgFVHiEdktaaedairNLh--gYtLhg~nInVea 70 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK-VLECDIVKN---------YGFVHIEDKTAAEDAIRNLH--GYTLHGVNINVEA 70 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc-eEeeeeecc---------cceEEeecccccHHHHhhcc--cceecceEEEEEe
Confidence 36899999999999999999999999 999999987 99999999999999999886 5688899998888
Q ss_pred cCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce
Q 018159 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
+..+. ..+++|+|+||.+.++..+|+..|.+||.|..+.|.+ +|+||.|.-.++|..|++.|||+.
T Consensus 71 SksKs--------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 71 SKSKS--------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred ccccC--------CCccccccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEeeccchHHHHhcccccc
Confidence 77763 4567999999999999999999999999999999985 699999999999999999999999
Q ss_pred eCCeeEeEE
Q 018159 347 IDGKSHLHF 355 (360)
Q Consensus 347 ~~G~~l~v~ 355 (360)
|.|++++|-
T Consensus 137 ~~gk~m~vq 145 (346)
T KOG0109|consen 137 FQGKRMHVQ 145 (346)
T ss_pred cccceeeee
Confidence 999999874
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.1e-20 Score=160.19 Aligned_cols=167 Identities=22% Similarity=0.451 Sum_probs=147.1
Q ss_pred cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeee
Q 018159 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
+++||+.+.+.+.++.|+..|.+||+ |.++.+..+ ..+++.+||+||+|.-++.|..|+..+|+. -++||.+.|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 58999999999999999999999998 999999999 589999999999999999999999999865 67899998885
Q ss_pred cCCCCCCCc-----cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHH
Q 018159 267 ADPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAV 339 (360)
Q Consensus 267 ~~~~~~~~~-----~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~ 339 (360)
........+ ......-++|||..+..++++++|+..|.-||.|.++.+.++..++ ||||||+|.+..+...|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 544433221 1123346899999999999999999999999999999999888766 999999999999999999
Q ss_pred HhhCCceeCCeeEeEEee
Q 018159 340 KDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 340 ~~lng~~~~G~~l~v~p~ 357 (360)
..||-+.++|.-|+|=.+
T Consensus 270 asMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hhcchhhcccceEecccc
Confidence 999999999999997543
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.82 E-value=3.5e-19 Score=154.94 Aligned_cols=238 Identities=23% Similarity=0.254 Sum_probs=181.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCC--CCCCcEEEEe
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~--~~~g~~l~v~ 181 (360)
..++.|.+||||+++++.+|..++.+||.|..+.+.+.+ + .|||+|.+..+|...+..+... .+.|+.|.|+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk----n--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK----N--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc----h--hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 367899999999999999999999999999999988753 3 6999999999998855433332 2566777766
Q ss_pred ecCcc----------------------------------------------cceeecCCCCCCCHHHHHHHHHhhCCcee
Q 018159 182 LSETK----------------------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215 (360)
Q Consensus 182 ~~~~~----------------------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~ 215 (360)
++.-. -+++|.|+-+.++-+=|..+|++||. +.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eE
Confidence 64211 14678999999999999999999998 55
Q ss_pred EEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecC------------------CCCCCC---
Q 018159 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD------------------PKSTPD--- 274 (360)
Q Consensus 216 ~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~------------------~~~~~~--- 274 (360)
.+.-... ...-.|.|+|.+...|..|...|.+.++..+.-.+++.++. |.....
T Consensus 179 KIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 179 KIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred EEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 5544432 12335899999999999999999887664433333332221 000000
Q ss_pred ---------------------------------c-ccccc--ccceEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEcCCC
Q 018159 275 ---------------------------------H-SAAAS--QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPG 317 (360)
Q Consensus 275 ---------------------------------~-~~~~~--~~~~l~V~nlp-~~~t~~~L~~~f~~~G~v~~v~i~~~ 317 (360)
. ..... .+..|.|.||. ..+|.+-|+.+|+-||.|.+|.|..+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 0 00001 14678899987 78999999999999999999999988
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 318 ~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+. .-|.|.|.+..+|..|+..|+|..|.|++|+|.+
T Consensus 334 kk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 334 KK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred CC---cceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 74 5799999999999999999999999999999865
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=5.3e-20 Score=160.78 Aligned_cols=233 Identities=23% Similarity=0.423 Sum_probs=179.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+.++|||++|+|.++++.|+.+|.+||.|..|.+.+++.+++++||+||.|.+.....++|. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999999999994 57788999999998876
Q ss_pred cc------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhc
Q 018159 185 TK------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (360)
Q Consensus 185 ~~------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~ 252 (360)
++ ..+||+.||..+++..+++.|.++|. |..+.++.+ ..+.+++||+||.|.+.+++.+++..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~-v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~--- 158 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGK-VADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ--- 158 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccce-eEeeEEeec-ccccccccceeeEeccccccceeccc---
Confidence 64 37999999999999999999999996 999999988 78899999999999999999977654
Q ss_pred CCcccCCCCceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEc-------CCCCCCCCCeE
Q 018159 253 ANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM-------PPGKSGKRDFG 325 (360)
Q Consensus 253 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i-------~~~~~~~kg~a 325 (360)
.-+.+.++.+.|..+.|+........ .........|++...+--.|..+|.-||.+..... .-......+.+
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~~~~~-~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~g 237 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQSTKS-SVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFNGGSG 237 (311)
T ss_pred ceeeecCceeeEeeccchhhcccccc-ccccccccccccccccccccchhccccCccccccccccccccccccccCCCcc
Confidence 56788999999999998865543322 11112222244444444445555665654431100 00011125788
Q ss_pred EEEeCCHHHHHHHHHhhCC
Q 018159 326 FIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 326 fV~F~~~~~A~~A~~~lng 344 (360)
|..|.+......+-..+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~ 256 (311)
T KOG4205|consen 238 YPEFGNSGLGFGYGNKLNR 256 (311)
T ss_pred ccccCccccccccccccCC
Confidence 8888876666655554443
No 43
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=8.1e-19 Score=160.69 Aligned_cols=240 Identities=20% Similarity=0.418 Sum_probs=187.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC-----------C-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----------G-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~-----------G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
..+.++|+++|+.++++.+..+|..- | .+..+.+.. .+.|||++|.+...|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhh-cccchh
Confidence 56689999999999999999988653 3 466666644 4669999999999999999 478888
Q ss_pred CCCcEEEEeecC-----------------------------cccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC
Q 018159 173 LKGKTIRCSLSE-----------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223 (360)
Q Consensus 173 ~~g~~l~v~~~~-----------------------------~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~ 223 (360)
+.|+.+++.... ....+|+++||...++.+++++...+|. +....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d- 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKD- 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeecc-
Confidence 888877664321 1257899999999999999999999998 999999999
Q ss_pred CCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCCCCCc------------------cccccccceE
Q 018159 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH------------------SAAASQVKAL 285 (360)
Q Consensus 224 ~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------~~~~~~~~~l 285 (360)
..+|.++||+|..|.+......|+..+++. .+++..+.++.+.+...... .....++.+|
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm--~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGM--QLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchh--hhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 567999999999999999999999998754 66777777776655432211 1222334556
Q ss_pred EEcCCC--CCCCH--------HHHHHHHhhcCCeeEEEcCCC-CCCC----CCeEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018159 286 YVKNIP--DNTST--------EKIKELFQRHGEVTKVVMPPG-KSGK----RDFGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 286 ~V~nlp--~~~t~--------~~L~~~f~~~G~v~~v~i~~~-~~~~----kg~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
.+.|+= ..+.+ ++++..|.+||.|..|.|+.. .... -|..||+|.+.++|++|+..|+|++|+||
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 666641 11111 567788999999999999877 2222 56679999999999999999999999999
Q ss_pred eEeEE
Q 018159 351 SHLHF 355 (360)
Q Consensus 351 ~l~v~ 355 (360)
.|...
T Consensus 483 tVvts 487 (500)
T KOG0120|consen 483 TVVAS 487 (500)
T ss_pred EEEEE
Confidence 98754
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.80 E-value=2e-18 Score=154.10 Aligned_cols=242 Identities=16% Similarity=0.239 Sum_probs=176.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
......-|.+++|||.+|+++|.+||+.++ |.++.+.+. +|+..|-|||+|.+.+++.+||+ .+-..+..|.|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 344567899999999999999999999996 556555544 59999999999999999999996 57778888999987
Q ss_pred ecCc-----------------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHH
Q 018159 182 LSET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (360)
Q Consensus 182 ~~~~-----------------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (360)
.+.. ...+.++.||+.|++++|.++|+..--.-..+.++.+ ..+++.|-|||+|.+.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD--QRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc--CCCCcccceEEEecCHHHHH
Confidence 6632 2457889999999999999999987531223455555 34678999999999999999
Q ss_pred HHHHHHhcCCcccCCCCceeeec-----------------------C------------CCC------------------
Q 018159 245 YSRQKMLNANFKLDGNTPTISWA-----------------------D------------PKS------------------ 271 (360)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~-----------------------~------------~~~------------------ 271 (360)
+|+..... .++.+.|.|-.+ . ...
T Consensus 160 ~Al~rhre---~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~ 236 (510)
T KOG4211|consen 160 IALGRHRE---NIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGF 236 (510)
T ss_pred HHHHHHHH---hhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccc
Confidence 99865321 122222211000 0 000
Q ss_pred -----------------------CCCccc----------cccc-cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCC
Q 018159 272 -----------------------TPDHSA----------AASQ-VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317 (360)
Q Consensus 272 -----------------------~~~~~~----------~~~~-~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~ 317 (360)
.....+ ...+ ...+..++||+..+..+|..+|+..-.+ .|+|..+
T Consensus 237 ~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig 315 (510)
T KOG4211|consen 237 SRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG 315 (510)
T ss_pred ccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC
Confidence 000000 0000 1568889999999999999999986554 7888888
Q ss_pred CCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 318 KSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 318 ~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
..++ .|-|+|+|.|+++|..|+.. ++..+..+-|-.
T Consensus 316 ~dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVEl 352 (510)
T KOG4211|consen 316 PDGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVEL 352 (510)
T ss_pred CCCccCCcceeecccchhhHhhhcc-CCcccCcceeee
Confidence 8777 89999999999999999984 666665555543
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=4.6e-19 Score=154.94 Aligned_cols=167 Identities=25% Similarity=0.423 Sum_probs=148.8
Q ss_pred cccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCcee
Q 018159 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
...++||++|++.++++.|+..|.++|. +..+.++++ ..+++++||+||.|.+......++.. ..+.+.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Ge-v~d~~vm~d-~~t~rsrgFgfv~f~~~~~v~~vl~~---~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGE-VTDCVVMRD-PSTGRSRGFGFVTFATPEGVDAVLNA---RTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCc-eeeEEEecc-CCCCCcccccceecCCCcchheeecc---cccccCCccccc
Confidence 3578999999999999999999999999 999999999 56799999999999999888866544 577899999999
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhh
Q 018159 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l 342 (360)
..+.+...+.........++|||++||..+++.+|+++|.+||.|..+.++.+.... +|||||+|.+.+++.+++. .
T Consensus 80 k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 80 KRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred eeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 999988877766665678899999999999999999999999999998888777655 9999999999999999888 5
Q ss_pred CCceeCCeeEeEEee
Q 018159 343 EKYEIDGKSHLHFPV 357 (360)
Q Consensus 343 ng~~~~G~~l~v~p~ 357 (360)
.-+.|+|+++.|+-.
T Consensus 159 ~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeeecCceeeEeec
Confidence 888999999998753
No 46
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=2.6e-17 Score=140.65 Aligned_cols=198 Identities=21% Similarity=0.368 Sum_probs=141.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEE--------EEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCC
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
+.-...|||+|||.++|.+++..+|++||.|. .|++.++.. |+.+|=|.+.|--.+++..|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44566799999999999999999999999774 478888877 999999999999999999999999999999
Q ss_pred CcEEEEeecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCC
Q 018159 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254 (360)
Q Consensus 175 g~~l~v~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~ 254 (360)
|+.|+|..|+ |+..|. . ..+++.++-+ . -.+-+..+....
T Consensus 210 g~~~rVerAk----------------------fq~Kge-~---------~~~~k~k~k~-------~-~~kk~~k~q~k~ 249 (382)
T KOG1548|consen 210 GKKLRVERAK----------------------FQMKGE-Y---------DASKKEKGKC-------K-DKKKLKKQQQKL 249 (382)
T ss_pred CcEEEEehhh----------------------hhhccC-c---------Cccccccccc-------c-cHHHHHHHHHhh
Confidence 9999999886 222222 0 0000100000 0 001111111111
Q ss_pred cccCCCCceeeecCCCCCCCccccccccceEEEcCCC----CCCC-------HHHHHHHHhhcCCeeEEEcCCCCCCCCC
Q 018159 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP----DNTS-------TEKIKELFQRHGEVTKVVMPPGKSGKRD 323 (360)
Q Consensus 255 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp----~~~t-------~~~L~~~f~~~G~v~~v~i~~~~~~~kg 323 (360)
+. |.... .........++|.++|+- +..+ .++|++.|++||.|.+|.+....+. |
T Consensus 250 ~d---------w~pd~---~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPd--G 315 (382)
T KOG1548|consen 250 LD---------WRPDR---DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPD--G 315 (382)
T ss_pred cc---------cCCCc---cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCC--c
Confidence 11 11111 112222556789999973 2223 2677888999999999998765543 8
Q ss_pred eEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 324 FGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 324 ~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.+-|.|.+...|..||+.|+|+.|+||.|...
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~ 347 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQLTAS 347 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceEEEEE
Confidence 99999999999999999999999999999753
No 47
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=1.9e-18 Score=156.27 Aligned_cols=166 Identities=19% Similarity=0.407 Sum_probs=137.4
Q ss_pred cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeee
Q 018159 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
+++|+-.++...+.-+|.++|+.+|. |..++++.+ +.+++++|.+||+|.+.+++..|+. |+ +..+-|.++.++.
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~aia-Ls--Gqrllg~pv~vq~ 254 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAIA-LS--GQRLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHhh-hc--CCcccCceeEecc
Confidence 57888888888899999999999999 999999999 8999999999999999999998884 44 3356677777765
Q ss_pred cCCCCCC--------CccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC-CCC-CCeEEEEeCCHHHHH
Q 018159 267 ADPKSTP--------DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSAL 336 (360)
Q Consensus 267 ~~~~~~~--------~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-kg~afV~F~~~~~A~ 336 (360)
....... .......+...|+|+||.+++++.+|+.+|.+||.|..|.++.+. .|. +|||||+|.+.++|.
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 4322111 111112233349999999999999999999999999999999886 444 999999999999999
Q ss_pred HHHHhhCCceeCCeeEeEEee
Q 018159 337 KAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 337 ~A~~~lng~~~~G~~l~v~p~ 357 (360)
+|+..|||+.+.|+.|+|-.+
T Consensus 335 ~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred HHHHHhccceecCceEEEEEe
Confidence 999999999999999997654
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=1.1e-17 Score=132.27 Aligned_cols=83 Identities=36% Similarity=0.677 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..+++|||+|||+.+|+++|+++|.+||.|.+|.++.++.|++++|||||+|.+.++|++|+..|++..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 49
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.73 E-value=1.3e-16 Score=128.44 Aligned_cols=233 Identities=16% Similarity=0.199 Sum_probs=134.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCC-CcceEEEEEecCHHHHHHHHHHhcCCCCC---CcEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG-ESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~-~~~g~a~v~f~~~~~a~~a~~~l~~~~~~---g~~l 178 (360)
+..-+||||.+||.++..-+|..+|+.|-.-..+.+......+ ..+.+||+.|.+.+.|..|+..|||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4457899999999999999999999999766666665433222 24579999999999999999999999875 7899
Q ss_pred EEeecCcccceeecCCCCCC-CHHHHHHHHHhhCCcee-EEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcc
Q 018159 179 RCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256 (360)
Q Consensus 179 ~v~~~~~~~~l~v~nlp~~~-~~~~l~~~f~~~g~~i~-~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~ 256 (360)
++.+++.+.+.--......- ....+... .++..+. ......+ .+.. .-........|. |++.- ....
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~--~~~~~qr~sa~~qhd---~~l~---~p~~l~~~~~a~-al~~~--~~t~ 179 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVID--NRNKEQRKSADDQHD---EGLS---DPDELQEPGNAD-ALKEN--DTTK 179 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCcccccc--ccChhhcccchhhcc---cccc---CccccCCccccc-cCCCc--cccc
Confidence 99998865432221111100 00000000 0000000 0000000 0000 000000000000 00000 0000
Q ss_pred cCCCCceeeecCCCC-----CCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCC
Q 018159 257 LDGNTPTISWADPKS-----TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE 331 (360)
Q Consensus 257 ~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~ 331 (360)
.....-..+|+.+.. ..........+.||||-||..+||+++|+++|+.|.....++|....+ ...||+.|.+
T Consensus 180 ~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g--~~vaf~~~~~ 257 (284)
T KOG1457|consen 180 SEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG--MPVAFADFEE 257 (284)
T ss_pred hhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC--cceEeecHHH
Confidence 000000011111110 000112224467999999999999999999999998888777754332 3789999999
Q ss_pred HHHHHHHHHhhCCceeC
Q 018159 332 RSSALKAVKDTEKYEID 348 (360)
Q Consensus 332 ~~~A~~A~~~lng~~~~ 348 (360)
.+.|..|+..|+|..+-
T Consensus 258 ~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 258 IEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHHHHhhcceec
Confidence 99999999999998773
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.5e-16 Score=124.34 Aligned_cols=147 Identities=23% Similarity=0.433 Sum_probs=127.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..++|||+|||.++.+.+|.++|.+||.|..|.+...+ ..-+||||+|.++.+|..|+..-+|..+.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 467899999999999999999999999999999875432 34569999999999999999999999999999999987
Q ss_pred Ccc--------------------------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcc
Q 018159 184 ETK--------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231 (360)
Q Consensus 184 ~~~--------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g 231 (360)
... .++.|+.||...++++|+......|. +....+.++ |
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGd-vCfadv~rD--------g 151 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGD-VCFADVQRD--------G 151 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCC-eeeeeeecc--------c
Confidence 431 36899999999999999999999998 888888776 4
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcccCCCCc
Q 018159 232 FSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (360)
Q Consensus 232 ~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~ 262 (360)
++.|.|.+.+++.-|+..|....+.-.|...
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~ 182 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKFRSEGETA 182 (241)
T ss_pred ceeeeeeehhhHHHHHHhhccccccCcCcEe
Confidence 8999999999999999998776654444433
No 51
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.71 E-value=1.5e-16 Score=137.52 Aligned_cols=252 Identities=17% Similarity=0.218 Sum_probs=185.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
...+...|..++|||..+..+|..+|+......-.+.+-...-|+..|.|.|.|.+++.-.-|++. +.+-+.++.|.|.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievY 134 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVY 134 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeee
Confidence 345677899999999999999999998653222212111222377889999999999999999975 7777888998886
Q ss_pred ecCcc----------------------cceeecCCCCCCCHHHHHHHHH---hhCCceeEEEEeeCCCCCCCCcceEEEE
Q 018159 182 LSETK----------------------NRLFIGNVPKNWTEDEFRKVIE---DVGPGVETIELIKDPQNPSRNRGFSFVL 236 (360)
Q Consensus 182 ~~~~~----------------------~~l~v~nlp~~~~~~~l~~~f~---~~g~~i~~~~~~~~~~~~~~~~g~~~v~ 236 (360)
.+... --+.+++||+.++..++..+|. +.+.....+-+++. ..|+..|-|||.
T Consensus 135 ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdAFvl 212 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDAFVL 212 (508)
T ss_pred ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccceEEE
Confidence 65432 1256789999999999999996 33333677777774 578999999999
Q ss_pred ecChHHHHHHHHHHhcCCcccCCCCcee----------------------eecCCCC---CCCccccccccceEEEcCCC
Q 018159 237 YYNNACADYSRQKMLNANFKLDGNTPTI----------------------SWADPKS---TPDHSAAASQVKALYVKNIP 291 (360)
Q Consensus 237 f~~~~~a~~a~~~~~~~~~~~~~~~~~v----------------------~~~~~~~---~~~~~~~~~~~~~l~V~nlp 291 (360)
|.....|..|+..-.. .++.|.+.+ ....+.. ............+|.+++||
T Consensus 213 fa~ee~aq~aL~khrq---~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLP 289 (508)
T KOG1365|consen 213 FACEEDAQFALRKHRQ---NIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLP 289 (508)
T ss_pred ecCHHHHHHHHHHHHH---HHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCC
Confidence 9999999998865321 111111110 0011110 01111122336789999999
Q ss_pred CCCCHHHHHHHHhhcCC-ee--EEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018159 292 DNTSTEKIKELFQRHGE-VT--KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 292 ~~~t~~~L~~~f~~~G~-v~--~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
+..+.++|..+|..|.. |. .|++..+..|+ .|-|||+|.+.+.|.+|....++....+|-|.|+|+.|
T Consensus 290 y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 290 YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 99999999999999873 33 37887777777 89999999999999999999888888999999999865
No 52
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.69 E-value=3.2e-15 Score=129.00 Aligned_cols=239 Identities=19% Similarity=0.196 Sum_probs=187.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHh--cCCCCCCcEEE
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL--HSKELKGKTIR 179 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l--~~~~~~g~~l~ 179 (360)
.+..+-.|.|++|-..+++.+|.+.++.||+|..+.+... +..|.|+|.+.+.|..|+... +...+.|+.--
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhh
Confidence 3456778999999999999999999999999999988655 347999999999999998532 34556666555
Q ss_pred EeecCc-------------ccce--eecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHH
Q 018159 180 CSLSET-------------KNRL--FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (360)
Q Consensus 180 v~~~~~-------------~~~l--~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (360)
+.++.+ ...| .|-|--+.+|-+-|..+..+.|+ +..|.|++. ..-.|.|+|.+.+.|.
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVAQ 173 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHHH
Confidence 544421 2233 34566677999999999999998 888888774 2346999999999999
Q ss_pred HHHHHHhcCCcccCCCCceeeecCCCCCC---------------------------------------------------
Q 018159 245 YSRQKMLNANFKLDGNTPTISWADPKSTP--------------------------------------------------- 273 (360)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------------------------------------- 273 (360)
+|...||+..+..+--++.+.++.|....
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 99999998776555555555555443200
Q ss_pred -------------------------CccccccccceEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEE
Q 018159 274 -------------------------DHSAAASQVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFI 327 (360)
Q Consensus 274 -------------------------~~~~~~~~~~~l~V~nlp-~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV 327 (360)
.++....+...++|.+|. ..++-..|+.+|..||.|.+|.+++.+. |.|+|
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamV 330 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMV 330 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEE
Confidence 000111225779999998 5678899999999999999999998875 78999
Q ss_pred EeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 328 HYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 328 ~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
++.+....++|+..||+..+.|.+|.|.+
T Consensus 331 emgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 331 EMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred EcCcHHHHHHHHHHhccCccccceEEEee
Confidence 99999999999999999999999999876
No 53
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.69 E-value=4.3e-15 Score=129.76 Aligned_cols=233 Identities=18% Similarity=0.237 Sum_probs=179.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceE-EEEEecCHHHHHHHHHHhcCCCCC-C-cEEEEeec
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELK-G-KTIRCSLS 183 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-a~v~f~~~~~a~~a~~~l~~~~~~-g-~~l~v~~~ 183 (360)
-+++|.|+-+.+|-+-|..+|++||.|..|.-.. ++.|| |.|+|.+...|+.|...|+|..|- | ..|+|.++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-----KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe-----cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 4789999999999999999999999997765443 22343 899999999999999999997763 3 46666554
Q ss_pred Cc---------------------------------------------------------------------ccceeecCC
Q 018159 184 ET---------------------------------------------------------------------KNRLFIGNV 194 (360)
Q Consensus 184 ~~---------------------------------------------------------------------~~~l~v~nl 194 (360)
.- ...|.+.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 21 023566666
Q ss_pred -CCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCCCC
Q 018159 195 -PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273 (360)
Q Consensus 195 -p~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~ 273 (360)
+..+|.+.|..+|.-||. |..++|.... +-.|.|+|.+...|..|+..|.+. .+.|+.+++.++.-..-.
T Consensus 306 n~~~VT~d~LftlFgvYGd-VqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~--~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGD-VQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGH--KLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred chhccchhHHHHHHhhhcc-eEEEEeeecC------CcceeeeecchhHHHHHHHHhhcc--eecCceEEEeeccCcccc
Confidence 455999999999999998 9999998862 357999999999999999999755 677888888776533211
Q ss_pred Ccc-----------------------------ccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCe
Q 018159 274 DHS-----------------------------AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF 324 (360)
Q Consensus 274 ~~~-----------------------------~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~ 324 (360)
... ...+++.+|.+.|+|.++++++|+..|..-|........-.+ .+.+
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k--d~km 454 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK--DRKM 454 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC--Ccce
Confidence 100 012346799999999999999999999998876543322111 1369
Q ss_pred EEEEeCCHHHHHHHHHhhCCceeCCe-eEeEE
Q 018159 325 GFIHYAERSSALKAVKDTEKYEIDGK-SHLHF 355 (360)
Q Consensus 325 afV~F~~~~~A~~A~~~lng~~~~G~-~l~v~ 355 (360)
|++.+.+.+.|..|+..++++.+++. .|+|-
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred eecccCChhHhhhhccccccccCCCCceEEEE
Confidence 99999999999999999999998765 66653
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=3.6e-16 Score=123.56 Aligned_cols=78 Identities=18% Similarity=0.409 Sum_probs=71.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..+++|||+|||..+++++|+++|++||.|.+|.|+.++.+. +|||||+|.+.++|.+|+..||+..|+|++|+|.+.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 446789999999999999999999999999999998776443 899999999999999999999999999999999864
No 55
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.66 E-value=4.9e-14 Score=121.79 Aligned_cols=226 Identities=18% Similarity=0.266 Sum_probs=177.5
Q ss_pred EcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCC--CCcEEEEeecCcc--
Q 018159 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--KGKTIRCSLSETK-- 186 (360)
Q Consensus 111 v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~~~-- 186 (360)
|-|--+.+|.+-|..++.+.|+|.+|.|.+.. --.|.|+|.+.+.|++|.+.|||..| .-.+|+|.+|++.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 34445679999999999999999999988642 33699999999999999999999765 3468888888663
Q ss_pred --------------------------------------------------------------------------------
Q 018159 187 -------------------------------------------------------------------------------- 186 (360)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (360)
T Consensus 202 nV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p 281 (494)
T KOG1456|consen 202 NVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASP 281 (494)
T ss_pred eeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCC
Confidence
Q ss_pred ------cceeecCCCC-CCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCC
Q 018159 187 ------NRLFIGNVPK-NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (360)
Q Consensus 187 ------~~l~v~nlp~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 259 (360)
..+.|.+|.. .++-+.|.++|..||. |..+++++. ..|.|.|++-+....++|+..|++..+ -|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN-V~rvkFmkT------k~gtamVemgd~~aver~v~hLnn~~l--fG 352 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN-VERVKFMKT------KPGTAMVEMGDAYAVERAVTHLNNIPL--FG 352 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCc-eeeEEEeec------ccceeEEEcCcHHHHHHHHHHhccCcc--cc
Confidence 1245556644 3778899999999998 999999986 356899999999999999999987654 55
Q ss_pred CCceeeecCCCC-------------------------------CCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCC
Q 018159 260 NTPTISWADPKS-------------------------------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308 (360)
Q Consensus 260 ~~~~v~~~~~~~-------------------------------~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~ 308 (360)
.++.+..+.... .........++++|..-|.|..+|++.|..+|...+.
T Consensus 353 ~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v 432 (494)
T KOG1456|consen 353 GKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDV 432 (494)
T ss_pred ceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCC
Confidence 555544332211 0012233445789999999999999999999998763
Q ss_pred -eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018159 309 -VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 309 -v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
..+|++...+..+...|.++|++..+|..||..+|+..+.|.
T Consensus 433 ~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 433 PPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred CcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCC
Confidence 467888777766666789999999999999999999998754
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=4.1e-16 Score=108.27 Aligned_cols=69 Identities=25% Similarity=0.594 Sum_probs=64.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018159 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
|||+|||..+|+++|+++|++||.|..+.+..+..+. +|+|||+|.+.++|.+|+..|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999988864444 89999999999999999999999999999986
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=6.3e-16 Score=107.33 Aligned_cols=70 Identities=44% Similarity=0.872 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 109 i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
|||+|||+++|+++|+.+|++||.|..+.+..+ .+++++|+|||+|.+.++|.+|+..|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5689999999999999999999999999999999985
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=7e-16 Score=126.03 Aligned_cols=82 Identities=37% Similarity=0.590 Sum_probs=79.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+..+|.|.|||.++++.+|++||.+||.|.++.+.+++.||.++|||||.|.+.++|.+||..|||.-++.--|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 018159 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.8e-15 Score=128.55 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=75.0
Q ss_pred cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 276 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
+......++|+|+|||+..-+-||+.+|.+||+|.+|.|+.+..|+||||||+|++.++|.+|-..|+|..+.||+|.|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 33345568999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred e
Q 018159 356 P 356 (360)
Q Consensus 356 p 356 (360)
-
T Consensus 170 ~ 170 (376)
T KOG0125|consen 170 N 170 (376)
T ss_pred c
Confidence 3
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=4.1e-15 Score=103.20 Aligned_cols=70 Identities=49% Similarity=0.851 Sum_probs=65.1
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 109 i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
|||+|||+++++++|+++|+.||.|..+.+..++. |.++|+|||+|.+.++|.+|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999988 99999999999999999999999888999999884
No 61
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.4e-15 Score=123.81 Aligned_cols=78 Identities=33% Similarity=0.681 Sum_probs=72.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
-++|||++|+|.++.+.|+++|.+||.|..+.++.++.||+|||||||.|++.++|.+|++. -+-.|+||+..|..|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999974 4567899999998764
No 62
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.60 E-value=1.7e-14 Score=129.16 Aligned_cols=162 Identities=16% Similarity=0.229 Sum_probs=127.8
Q ss_pred ceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeec
Q 018159 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (360)
Q Consensus 188 ~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 267 (360)
.|.++.|||++|.++|..+|+.++ |..+.+.+. +++..|-|||+|.+.+++.+|++.- ...+..+.|.|--+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~Alkkd---R~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG--IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKD---RESMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc--eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhh---HHHhCCceEEEEcc
Confidence 456789999999999999999998 888777664 6899999999999999999999863 34566777777555
Q ss_pred CCCCCCC-----ccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEcCCCCCCC-CCeEEEEeCCHHHHHHHHH
Q 018159 268 DPKSTPD-----HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 268 ~~~~~~~-----~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~-kg~afV~F~~~~~A~~A~~ 340 (360)
.+..... ......+...|.+++||+.||+++|.++|+-.-.|.. |.++.+..++ .|-|||.|.+.+.|+.|+.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 3322111 1111135678999999999999999999998766655 5567666665 7899999999999999999
Q ss_pred hhCCceeCCeeEeEEeee
Q 018159 341 DTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 341 ~lng~~~~G~~l~v~p~~ 358 (360)
. |...|+-|-|.|++..
T Consensus 164 r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 164 R-HRENIGHRYIEVFRSS 180 (510)
T ss_pred H-HHHhhccceEEeehhH
Confidence 5 7778888888887654
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=5.3e-15 Score=102.62 Aligned_cols=69 Identities=32% Similarity=0.628 Sum_probs=63.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018159 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
|+|+|||..+++++|+.+|+.||.|..|++...+.+. +|+|||+|.+.++|.+|+..++|..|+|++|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999887655 89999999999999999999999999999985
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=9.2e-15 Score=123.43 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=68.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++|||+|||+.+++.+|+++|+.||.|.+|.|+.++. .+|||||+|.++++|..|+. |||..|.|+.|.|.|.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEec
Confidence 46999999999999999999999999999999987764 36999999999999999996 9999999999999885
No 65
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=3.9e-15 Score=122.40 Aligned_cols=164 Identities=27% Similarity=0.443 Sum_probs=128.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCcc
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
..+||++||+.+.+.+|..||..||.+..+.+. .||+||+|.+..+|.-|+..+++..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 359999999999999999999999999998775 568999999999999999999999999988877776531
Q ss_pred cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeee
Q 018159 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
.. . . |.+.+ + ++.. |
T Consensus 74 ~~-----------------------~-----------~--g~~~~-g-------------------------~r~~---~ 88 (216)
T KOG0106|consen 74 RR-----------------------G-----------R--GRPRG-G-------------------------DRRS---D 88 (216)
T ss_pred cc-----------------------c-----------c--CCCCC-C-------------------------Cccc---h
Confidence 10 0 0 00000 0 0000 0
Q ss_pred cCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce
Q 018159 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
.... .......+.|+|.|++..+.+.+|...|.++|.+....+. .+++||+|.+..+|.+|+..|+|..
T Consensus 89 ~~~~-----~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~------~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRRY-----RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR------RNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhcc-----CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh------ccccceeehhhhhhhhcchhccchh
Confidence 0000 0111345689999999999999999999999999666552 2789999999999999999999999
Q ss_pred eCCeeEeE
Q 018159 347 IDGKSHLH 354 (360)
Q Consensus 347 ~~G~~l~v 354 (360)
+.|+.|.+
T Consensus 158 ~~~~~l~~ 165 (216)
T KOG0106|consen 158 LNGRRISV 165 (216)
T ss_pred hcCceeee
Confidence 99999987
No 66
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=9e-14 Score=123.80 Aligned_cols=173 Identities=35% Similarity=0.608 Sum_probs=126.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+.+|+++|+.+|.+||.|..+.+..++.+|+++|||||.|.+.+.|..|+..+++..+.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred --ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCce
Q 018159 186 --KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 186 --~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
..... .... .........
T Consensus 195 ~~~~~~~------------------------------------~~~~---------------~~~~~~~~~--------- 214 (306)
T COG0724 195 ASQPRSE------------------------------------LSNN---------------LDASFAKKL--------- 214 (306)
T ss_pred ccccccc------------------------------------cccc---------------cchhhhccc---------
Confidence 00000 0000 000000000
Q ss_pred eeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHh
Q 018159 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~ 341 (360)
.............+++.+++..++...+...|..+|.+..+.+....... ..+.++.+.....+..+...
T Consensus 215 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 215 --------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred --------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcc
Confidence 00011112345689999999999999999999999999888777665543 33444555555555555554
Q ss_pred hCCce
Q 018159 342 TEKYE 346 (360)
Q Consensus 342 lng~~ 346 (360)
.++..
T Consensus 287 ~~~~~ 291 (306)
T COG0724 287 GNKKK 291 (306)
T ss_pred cccee
Confidence 44433
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.5e-14 Score=120.80 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=70.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.++. ++|||||+|.+.+.|..|| .|+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 5799999999999999999 5999999999999999863
No 68
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1e-15 Score=119.43 Aligned_cols=80 Identities=31% Similarity=0.651 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.++.-|||+|||+..|+.+|.-.|++||.|..|.+++++.||+|+||||+.|.++.+...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999764
No 69
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.9e-14 Score=120.90 Aligned_cols=81 Identities=28% Similarity=0.487 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+-+||||+.|++++++..|+..|..||+|+.|+|+++..||+++|||||+|....++..|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 018159 184 E 184 (360)
Q Consensus 184 ~ 184 (360)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 5
No 70
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2e-13 Score=106.93 Aligned_cols=152 Identities=17% Similarity=0.318 Sum_probs=125.9
Q ss_pred cccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCcee
Q 018159 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
..++|||+|||..+.+.+|..+|-+||. |..|.+... ....+||||+|.++.+|..|+..- .++...|..+.|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~-i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygR--dGYdydg~rLRV 77 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGR-IREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGR--DGYDYDGCRLRV 77 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcc-eEEEEeccC----CCCCCeeEEEecCccchhhhhhcc--cccccCcceEEE
Confidence 4678999999999999999999999998 999988543 456789999999999999998754 356778888888
Q ss_pred eecCCCCCCC--------------------ccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCe
Q 018159 265 SWADPKSTPD--------------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF 324 (360)
Q Consensus 265 ~~~~~~~~~~--------------------~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~ 324 (360)
.++....... -.+.......|.|++||.+.++++|++...+-|.|....+.++ |+
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~ 152 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GV 152 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cc
Confidence 8776553111 0122234578999999999999999999999999998888766 78
Q ss_pred EEEEeCCHHHHHHHHHhhCCceeC
Q 018159 325 GFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 325 afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
+.|+|...++.+=|+..|....+.
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeeeehhhHHHHHHhhcccccc
Confidence 999999999999999999887664
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.9e-14 Score=105.79 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
.+.++||||+||++-+|+++|.+||+.+|.|..|.+=.++.+..+-|||||+|-+.++|..|+..++++.+..++|+|.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34689999999999999999999999999999999999999899999999999999999999999999999999999987
Q ss_pred c
Q 018159 183 S 183 (360)
Q Consensus 183 ~ 183 (360)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=4.1e-14 Score=126.48 Aligned_cols=78 Identities=23% Similarity=0.489 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCH--HHHHHHHHHhcCCCCCCcEEEEee
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK--EFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...+||||||++.+|+++|..+|..||.|.+|.|+ +.+| ||||||+|.+. ..+.+||..|||..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35789999999999999999999999999999999 4457 99999999987 789999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9874
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.51 E-value=5e-13 Score=117.85 Aligned_cols=166 Identities=19% Similarity=0.349 Sum_probs=134.6
Q ss_pred ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceee
Q 018159 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.+.+||+|+|+.+.+++|+.+|...+..|..|.+..+ ..++++|+|.|+|+.++.+++|+..|+ .+.+.|+++.+.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~ln--k~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLN--KYEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhh--hccccCceEEEe
Confidence 4569999999999999999999876555999999997 689999999999999999999999997 457778877664
Q ss_pred ecCCCCCCC-----------------------------------------------------------------------
Q 018159 266 WADPKSTPD----------------------------------------------------------------------- 274 (360)
Q Consensus 266 ~~~~~~~~~----------------------------------------------------------------------- 274 (360)
-........
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 332210000
Q ss_pred --------ccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCc
Q 018159 275 --------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 275 --------~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
.....+....+||.||.+.+....|.+.|.-.|.|..|-+..++.+. +|||.++|..+-.|..|+..|++.
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 00011114679999999999999999999999999999998888777 999999999999999999999976
Q ss_pred eeCCeeEeEE
Q 018159 346 EIDGKSHLHF 355 (360)
Q Consensus 346 ~~~G~~l~v~ 355 (360)
-+..++..++
T Consensus 280 g~~~~~~~~R 289 (608)
T KOG4212|consen 280 GLFDRRMTVR 289 (608)
T ss_pred CCccccceee
Confidence 6666665554
No 74
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=97.34 Aligned_cols=75 Identities=23% Similarity=0.444 Sum_probs=68.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.-++.|||+|||+.+|.+++.++|.+||.|..|+|-..+.+ +|.|||.|.+..+|.+|+..|+|.-+.++-|.|-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 34678999999999999999999999999999999877655 5999999999999999999999999999988763
No 75
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.1e-13 Score=114.95 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=68.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...+|+|+||++.+|+++|+++|+.||.|.+|+|+++.. .++||||+|.++.+|..|+. |||..|.|++|.|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 356999999999999999999999999999999998743 35899999999999999996 9999999999999884
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=97.33 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.-.+.|||+|||+.+|.+++.++|..||.|..|++=-.+. .+|.|||.|.+..+|.+|+..|+|..+.++.|.|.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3568899999999999999999999999999999966544 4899999999999999999999999999999999987
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
++.
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 753
No 77
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2.3e-13 Score=94.42 Aligned_cols=72 Identities=25% Similarity=0.526 Sum_probs=66.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
+|+|+|||..++..+|+.+|++||.|..+.+....+..+|+|||+|.+...|.+|+..++|..|.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999887763348999999999999999999999999999999863
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.5e-13 Score=114.15 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+.+.+|||+||++.+|+.+|++||+.||.|.+|+|+++ +..+|||||+|.++..|..|+ .|+|..|.+++|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 45789999999999999999999999999999999998 455689999999999999999 69999999999999886
Q ss_pred C
Q 018159 184 E 184 (360)
Q Consensus 184 ~ 184 (360)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 79
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.4e-14 Score=102.73 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=70.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..++||||+||.+.+++++|.++|+++|.|..|.+-.++.+. =|||||+|-+.++|..|++.+||+.++.+.|++-+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 457899999999999999999999999999999987776655 78999999999999999999999999999998754
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.3e-13 Score=94.44 Aligned_cols=72 Identities=46% Similarity=0.803 Sum_probs=67.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 108 ~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
+|||+|||+.++..+|+.+|.+||.|..+.+..++ +.++|+|||+|.+...|..|+..+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7889999999999999999999999999999998873
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=9.3e-14 Score=103.09 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=75.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...+.|||+++...+++++|.+.|..||.|+++++..++.+. +|||+|+|.+...|++|+..|||..+.|.+|.|-||
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 456899999999999999999999999999999998777655 999999999999999999999999999999999999
Q ss_pred ec
Q 018159 358 FV 359 (360)
Q Consensus 358 ~v 359 (360)
||
T Consensus 150 Fv 151 (170)
T KOG0130|consen 150 FV 151 (170)
T ss_pred Ee
Confidence 98
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.47 E-value=7e-14 Score=111.45 Aligned_cols=82 Identities=29% Similarity=0.487 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..-.+|.|-||-+-++.++|+.+|.+||.|.+|.|..++.|+.++|||||.|....+|+.|+.+|+|.+|+|+.|.|+.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Cc
Q 018159 184 ET 185 (360)
Q Consensus 184 ~~ 185 (360)
.-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 63
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=2.2e-13 Score=121.93 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=67.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCH--HHHHHHHHhhCCceeCCeeEeEEe
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER--SSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~--~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
...+|||+||++.+++++|+.+|+.||.|.+|.|++.++ ||||||+|.+. .++.+||..|||..|.|+.|+|-.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 346899999999999999999999999999999994433 89999999987 789999999999999999999854
No 84
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.7e-13 Score=111.02 Aligned_cols=78 Identities=22% Similarity=0.392 Sum_probs=72.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|.|.||+.++++.+|+++|.+||.|.+|+|.+++.++ ||||||+|.+.++|.+||..|||+-++.--|+|.|-
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 356889999999999999999999999999999999998776 999999999999999999999999999888888763
No 85
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.5e-13 Score=105.66 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=67.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+.|||+||+..++..+|..+|..||.|..|-|...+. |||||+|+++-+|..|+..|+|..|+|..|+|.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 57899999999999999999999999999998877554 8999999999999999999999999999999864
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=4.9e-13 Score=92.43 Aligned_cols=71 Identities=48% Similarity=0.863 Sum_probs=67.2
Q ss_pred EcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 111 v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
|+|||..++.++|+.+|++||.|..+.+...+.++.++|+|||+|.+.+.|..|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988889999999999999999999999999999999998873
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=2e-13 Score=101.33 Aligned_cols=80 Identities=30% Similarity=0.534 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
.+-.|||.++...+|+++|.+.|..||.|+.+.+..+..||..+|||.|+|.+.+.|++|+..+||..|.|+.|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999974
No 88
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=3e-13 Score=115.25 Aligned_cols=79 Identities=27% Similarity=0.491 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|+|+|||+...+.||+.+|.+||.|.+|.|+-+. -.|||||||.|.+.++|.+|.+.|||..+.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 45689999999999999999999999999999998875 3689999999999999999999999999999999999876
Q ss_pred c
Q 018159 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 4
No 89
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.8e-13 Score=110.05 Aligned_cols=84 Identities=33% Similarity=0.602 Sum_probs=80.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...+||||++|...+|+.-|...|-+||.|..|.++.+..+++.||||||+|.-.++|..|+..||+..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 90
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=4.7e-13 Score=104.15 Aligned_cols=75 Identities=29% Similarity=0.498 Sum_probs=70.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+||+..++..+|...|..||+|..|+|-..+ .|||||+|.++-+|..|+..|+|..|.|..|+|.++.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 6789999999999999999999999999999998765 78999999999999999999999999999999998753
No 91
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1e-12 Score=110.59 Aligned_cols=75 Identities=25% Similarity=0.469 Sum_probs=70.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.+-+||||..|++.+++..|+..|+.||.|+.|+|+.++-+. +|||||+|.+.-+..+|++...|.+|+|+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 567899999999999999999999999999999999886444 999999999999999999999999999999987
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.40 E-value=5.6e-13 Score=106.35 Aligned_cols=74 Identities=23% Similarity=0.470 Sum_probs=70.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
..+|.|-||.+.++.++|+-+|.+||.|..|.||.+..+. +|||||.|....+|+.|+..|+|..++|+.|+|-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 4689999999999999999999999999999999998876 9999999999999999999999999999999874
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.40 E-value=3e-12 Score=89.23 Aligned_cols=73 Identities=27% Similarity=0.507 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+|+|+|||..+++++|+++|+.||.|..+.+.....+. +|+|||+|.+.++|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999988766544 79999999999999999999999999999998863
No 94
>smart00360 RRM RNA recognition motif.
Probab=99.40 E-value=1.6e-12 Score=89.74 Aligned_cols=68 Identities=29% Similarity=0.586 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 287 V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
|+|||..++.++|+++|++||.|..+.++..+. +. +|+|||+|.++++|.+|+..|++..+.|++|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 579999999999999999999999999887654 22 899999999999999999999999999999986
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.39 E-value=2.9e-12 Score=89.32 Aligned_cols=74 Identities=47% Similarity=0.846 Sum_probs=68.8
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 108 ~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+|+|+|||+.+++++|+.+|+.||.|..+.+...+.+ .++|+|||+|.+.+.|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987764 7799999999999999999999999999999998864
No 96
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=5.3e-14 Score=133.65 Aligned_cols=221 Identities=16% Similarity=0.207 Sum_probs=180.5
Q ss_pred CCCCCCEEEEcCCCCCCCHH-HHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 102 LPPNGSEVFIGGLPKDASEE-DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~-~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
.+..++...+.++.+..... ..+..|+.+|.|..+++......-....++++.+.....+..|.. ..+..+.++.+.|
T Consensus 567 ~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av 645 (881)
T KOG0128|consen 567 APLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAV 645 (881)
T ss_pred hhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccC
Confidence 33456678888887776655 567889999999999998733322333378999999999999984 6888888898888
Q ss_pred eecCcc----------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHH
Q 018159 181 SLSETK----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (360)
Q Consensus 181 ~~~~~~----------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (360)
..+.+. .++|++||+..+...+|...|.++|. +..+++... .+.++.+|+||+.|.....+.
T Consensus 646 ~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 646 GLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAG 723 (881)
T ss_pred CCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchh
Confidence 877653 35899999999999999999999996 777777633 578899999999999999999
Q ss_pred HHHHHHhcCCcccCCCCceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CC
Q 018159 245 YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RD 323 (360)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg 323 (360)
+|+....+..+ | ...|+|+|.|+..|.+.|+.+|+++|.++.++++..+.+. +|
T Consensus 724 aaV~f~d~~~~---g----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg 778 (881)
T KOG0128|consen 724 AAVAFRDSCFF---G----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKG 778 (881)
T ss_pred hhhhhhhhhhh---h----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccccc
Confidence 88875432211 1 3479999999999999999999999999999999988887 99
Q ss_pred eEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018159 324 FGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 324 ~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
.|||.|.+..+|.+++....+..++-+
T Consensus 779 ~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 779 KARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ceeccCCCcchhhhhcccchhhhhhhc
Confidence 999999999999999998777665433
No 97
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3.3e-11 Score=109.16 Aligned_cols=186 Identities=20% Similarity=0.327 Sum_probs=123.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCC--Ccce---EEEEEecCHHHHHHHHHHhcCCCCCCc
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKG---FAFVSFRSKEFAKKAIDELHSKELKGK 176 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g---~a~v~f~~~~~a~~a~~~l~~~~~~g~ 176 (360)
.+.-++.|||++||++++++.|...|..||.+..=.-.+....+ .++| |+|+.|.+....+.-+..+.- .-.+-
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccce
Confidence 34567899999999999999999999999987432221111111 2455 999999999999988876543 11122
Q ss_pred EEEEeecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcc
Q 018159 177 TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256 (360)
Q Consensus 177 ~l~v~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~ 256 (360)
.+.|.....+.+ .|. |..+++... -||
T Consensus 334 yf~vss~~~k~k-~VQ---------------------IrPW~laDs----------~fv--------------------- 360 (520)
T KOG0129|consen 334 YFKVSSPTIKDK-EVQ---------------------IRPWVLADS----------DFV--------------------- 360 (520)
T ss_pred EEEEecCccccc-cee---------------------EEeeEeccc----------hhh---------------------
Confidence 222322211110 000 222222110 000
Q ss_pred cCCCCceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEcCCCC-CCC-CCeEEEEeCCHH
Q 018159 257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ-RHGEVTKVVMPPGK-SGK-RDFGFIHYAERS 333 (360)
Q Consensus 257 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~-~~G~v~~v~i~~~~-~~~-kg~afV~F~~~~ 333 (360)
.. ......+.+||||++||..++.++|..+|. -||.|..|-|..+. -+. +|-|-|+|.+..
T Consensus 361 ~d----------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqq 424 (520)
T KOG0129|consen 361 LD----------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQ 424 (520)
T ss_pred hc----------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccH
Confidence 00 011124567999999999999999999999 69999999999884 343 999999999999
Q ss_pred HHHHHHHh----hCCceeCCeeEeEEeee
Q 018159 334 SALKAVKD----TEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 334 ~A~~A~~~----lng~~~~G~~l~v~p~~ 358 (360)
+-.+||.+ |++..| .|+|.|+|..
T Consensus 425 sYi~AIsarFvql~h~d~-~KRVEIkPYv 452 (520)
T KOG0129|consen 425 AYIKAISARFVQLDHTDI-DKRVEIKPYV 452 (520)
T ss_pred HHHHHHhhheEEEecccc-ceeeeeccee
Confidence 99999985 333344 4689999864
No 98
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.2e-13 Score=108.00 Aligned_cols=77 Identities=21% Similarity=0.368 Sum_probs=72.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.-|||+|||+.+|+-+|.-+|++||.|..|.+++++.++ +||||+.|.+.-+...|+-.|||..|.||.|+|=.+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45689999999999999999999999999999999998766 999999999999999999999999999999998654
No 99
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.36 E-value=4.2e-12 Score=83.65 Aligned_cols=55 Identities=27% Similarity=0.452 Sum_probs=50.1
Q ss_pred HHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 299 L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
|+++|++||.|..|.+...+ +++|||+|.+.++|.+|++.|||..|+|++|+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68899999999999998776 48999999999999999999999999999999875
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.36 E-value=1.8e-12 Score=118.76 Aligned_cols=80 Identities=36% Similarity=0.720 Sum_probs=77.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCcc
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
+.|||||||++++++.|..+|+..|.|.+++++.|+.||+++||||++|.+.+.|.+|++.|||..+.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998643
No 101
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3.8e-12 Score=104.00 Aligned_cols=74 Identities=23% Similarity=0.456 Sum_probs=64.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.-++|||++||..+..+.|+++|.+||.|..+.++.++.+. ||||||+|++.++|.+|++- -+-.|+||+..|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 34689999999999999999999999999998888777654 99999999999999999996 3556788876654
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.2e-11 Score=85.32 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=49.9
Q ss_pred HHHHHHHHh----hcCCeeEEE-cCCCC----CCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 296 TEKIKELFQ----RHGEVTKVV-MPPGK----SGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 296 ~~~L~~~f~----~~G~v~~v~-i~~~~----~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
+++|+++|+ +||.|.+|. ++.++ +..+|||||+|.+.++|.+|++.|||+.+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999884 43332 234999999999999999999999999999999986
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=1.7e-11 Score=84.63 Aligned_cols=62 Identities=23% Similarity=0.457 Sum_probs=55.9
Q ss_pred HHHHHHhhc----cCCcEEEEE-EeeCCCC--CCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 120 EEDLRDLCE----PIGDVFEVR-LMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 120 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
+++|+++|+ +||.|.++. ++.++.+ |+++|||||.|.+.++|.+|+..|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 568889998 999999996 7777666 8999999999999999999999999999999999763
No 104
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=2.6e-11 Score=107.90 Aligned_cols=76 Identities=29% Similarity=0.575 Sum_probs=71.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC-CCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++|||+|||..+++++|..+|.+||.|..|++..++ .+. +|||||.|.+..+|..|+..++|..|.|++|+|.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 5899999999999999999999999999999998886 333 999999999999999999999999999999999875
No 105
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.25 E-value=2.9e-11 Score=79.59 Aligned_cols=56 Identities=38% Similarity=0.705 Sum_probs=50.8
Q ss_pred HHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 123 LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 123 l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
|+++|++||.|..+.+.... +++|||+|.+.++|..|+..|||..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997654 589999999999999999999999999999999875
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=5.3e-11 Score=109.79 Aligned_cols=166 Identities=26% Similarity=0.482 Sum_probs=130.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
..+-....|||++||...++..++++...||++....++.+..+|.++||||.+|.+......|+..|||..+.++.|.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCccc------------------------------ceeecCC--CCC-CCH-------HHHHHHHHhhCCceeEEEEe
Q 018159 181 SLSETKN------------------------------RLFIGNV--PKN-WTE-------DEFRKVIEDVGPGVETIELI 220 (360)
Q Consensus 181 ~~~~~~~------------------------------~l~v~nl--p~~-~~~-------~~l~~~f~~~g~~i~~~~~~ 220 (360)
+.+-... .|++.|+ |.. ..+ ++++.-+..||. |..|.+.
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ip 442 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIP 442 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecC
Confidence 8764321 1222221 000 111 333445667887 9999888
Q ss_pred eC-C-CCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCC
Q 018159 221 KD-P-QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269 (360)
Q Consensus 221 ~~-~-~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~ 269 (360)
+. + .....+.|..||+|.+.+++.+|...|+|. ++.++.+...|...
T Consensus 443 r~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr--KF~nRtVvtsYyde 491 (500)
T KOG0120|consen 443 RPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGR--KFANRTVVASYYDE 491 (500)
T ss_pred CCCCCCCcCCCcccEEEEecChHHHHHHHHHccCc--eeCCcEEEEEecCH
Confidence 76 2 234556788999999999999999999866 66777777666554
No 107
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.2e-11 Score=102.67 Aligned_cols=87 Identities=26% Similarity=0.507 Sum_probs=81.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
..-+++|.|||-.||....+.+|..+|-+||.|.+.++..++.|..+|+|+||.|.++.+|+.||..|||+.|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCccc
Q 018159 181 SLSETKN 187 (360)
Q Consensus 181 ~~~~~~~ 187 (360)
...+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 8877653
No 108
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.21 E-value=5.8e-11 Score=95.27 Aligned_cols=85 Identities=27% Similarity=0.469 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccC-CcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPI-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
.......++|..+|..+-+..+..+|.+| |.|.++++.+++.||.|+|||||+|.+.+.|.-|...||+..|.|+.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34466789999999999999999999998 78899999999999999999999999999999999999999999999999
Q ss_pred eecCcc
Q 018159 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 886654
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.21 E-value=1.6e-10 Score=107.79 Aligned_cols=162 Identities=13% Similarity=0.061 Sum_probs=110.4
Q ss_pred eecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCcee-----
Q 018159 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI----- 264 (360)
Q Consensus 190 ~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v----- 264 (360)
-++.++++....+++++|...- +....|..+ ...+...|.++|.|.....+.+|++.- ..+ .-.|.+.+
T Consensus 315 ~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn--~~~-~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 315 NYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRN--PSD-DVNRPFQTGPPGN 388 (944)
T ss_pred eecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcC--chh-hhhcceeecCCCc
Confidence 3456788888888999987543 444444443 223344788999999999999997641 111 11111111
Q ss_pred ----------------------------eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEcC
Q 018159 265 ----------------------------SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMP 315 (360)
Q Consensus 265 ----------------------------~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~ 315 (360)
..+.....+..........+|||..||..++...+.++|...-.|+. |.|-
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 11111111111122233678999999999999999999999877776 7777
Q ss_pred CCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 316 PGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 316 ~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....+. ++.|||.|..+..+.+|+..-..+-++-|.|+|.++
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 666655 899999999999999999877777777888888775
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.19 E-value=4.8e-11 Score=109.48 Aligned_cols=74 Identities=22% Similarity=0.403 Sum_probs=70.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+.|||+|||+.++++.|..+|+..|.|.++++..++.+. +||||++|.+.++|.+|++.|||..++||+|+|-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 789999999999999999999999999999999887665 99999999999999999999999999999999854
No 111
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=9.7e-11 Score=107.10 Aligned_cols=72 Identities=26% Similarity=0.480 Sum_probs=64.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
-..++|+|-|||..++.++|..+|..||.|..++.-.. .+|..||+|-+...|++|++.|++..+.|+.|..
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 35789999999999999999999999999999766543 4789999999999999999999999999988873
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.18 E-value=3.7e-10 Score=105.36 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=65.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCee-EEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
+.|.+.|+|++++-++|.++|..|-.+. +|+|..+..+. .|-|.|.|.+.+.|.+|+..|++.+|..|.|.++
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 5799999999999999999999998664 67777776666 8999999999999999999999999999998875
No 113
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.4e-11 Score=97.96 Aligned_cols=76 Identities=22% Similarity=0.473 Sum_probs=70.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...++|||++|...|++.-|...|-+||.|..|.||.+-... ||||||+|.-.++|.+|+..||+..+.||.|+|-
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 345799999999999999999999999999999999876544 9999999999999999999999999999999984
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.5e-11 Score=101.66 Aligned_cols=87 Identities=21% Similarity=0.444 Sum_probs=81.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
...++...|||--|.+-+|.++|.-+|+.||.|.+|.++++..||-+..||||+|.+.+++.+|.=.|.+..|..+.|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCccc
Q 018159 181 SLSETKN 187 (360)
Q Consensus 181 ~~~~~~~ 187 (360)
.++++-.
T Consensus 314 DFSQSVs 320 (479)
T KOG0415|consen 314 DFSQSVS 320 (479)
T ss_pred ehhhhhh
Confidence 9987533
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=1.3e-09 Score=95.14 Aligned_cols=144 Identities=22% Similarity=0.306 Sum_probs=113.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccC----CcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcE----
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPI----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT---- 177 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~---- 177 (360)
.-.|.+++||+++|..++..||.+- |....+.+++.++ |+..|-|||.|...+.|+.||.. |...++.|.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 4578999999999999999999742 3556777777765 99999999999999999999964 322222222
Q ss_pred ---------------------------------EEEeecCcccceeecCCCCCCCHHHHHHHHHhhCCceeE--EEEeeC
Q 018159 178 ---------------------------------IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET--IELIKD 222 (360)
Q Consensus 178 ---------------------------------l~v~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~--~~~~~~ 222 (360)
..|...+++..+.+++||+..+.++|..+|..|...|.. +.++-+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 233334456789999999999999999999999865655 666664
Q ss_pred CCCCCCCcceEEEEecChHHHHHHHHHHhcC
Q 018159 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (360)
Q Consensus 223 ~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~ 253 (360)
..|+..|-|||+|.+.+.|..|...-+++
T Consensus 319 --~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 319 --GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred --CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 67899999999999999998888766544
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.02 E-value=8.3e-10 Score=90.24 Aligned_cols=74 Identities=19% Similarity=0.340 Sum_probs=65.7
Q ss_pred cceEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 282 VKALYVKNIPDNTSTEKIKE----LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~----~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+.||||.||+..+..++|+. +|++||.|..|...... .-||-|||.|++.+.|..|+..|+|+.|.|+.+++-.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 34999999999999999988 99999999998876443 2379999999999999999999999999999998753
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.2e-10 Score=94.06 Aligned_cols=139 Identities=25% Similarity=0.377 Sum_probs=116.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
+.+...+||||.|+-..++++-|.++|-+.|+|..|.|...+. +..+ ||||.|.+.-+...|++.+||..+.++.+.|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 3455678999999999999999999999999999999988876 5666 9999999999999999999999999999977
Q ss_pred eecCcccceeecC----CCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHh
Q 018159 181 SLSETKNRLFIGN----VPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251 (360)
Q Consensus 181 ~~~~~~~~l~v~n----lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~ 251 (360)
.+ +-++ |...++.+.+...|+..|+ +..+++.++ ..++.+.++++.+...-+.-.++..+.
T Consensus 82 ~~-------r~G~shapld~r~~~ei~~~v~s~a~p-~~~~R~~~~--~d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 82 TL-------RCGNSHAPLDERVTEEILYEVFSQAGP-IEGVRIPTD--NDGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred cc-------ccCCCcchhhhhcchhhheeeecccCC-CCCcccccc--ccCCccCccchhhhhhhcCcHHhhhhc
Confidence 54 3344 5566788888889999997 999998886 458888899998877766666666553
No 118
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.00 E-value=1.1e-09 Score=87.93 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=68.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEcCCCC-CCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~-G~v~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....++|..+|..+.+..|..+|.+| |.|..+++.+++ .|+ +|||||+|.+.+.|.-|-..||++.|.|+.|.|..+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34579999999999999999999998 788888985554 444 999999999999999999999999999999998755
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.99 E-value=1.1e-09 Score=103.65 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=69.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
-++||||+.||..+++.+|.++|..||.|.+|.+...+ |||||.+....+|.+|+.+|++..+.++.|+|.|.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 37999999999999999999999999999999988776 99999999999999999999999999999999985
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=4.1e-11 Score=114.39 Aligned_cols=134 Identities=24% Similarity=0.299 Sum_probs=117.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+...++||+||++.+...+|...|.++|.+..+++......++.+|+||+.|..++.+.+|+....+..+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 34568999999999999999999999999988888877788999999999999999999999765544443
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHh
Q 018159 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251 (360)
Q Consensus 184 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~ 251 (360)
+..++|+|.|+..|.+.++.++..+|. +...+++.. ..|.++|.++|.|.+..++.++.....
T Consensus 736 --K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 --KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred --hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccch
Confidence 668899999999999999999999998 888887664 568999999999999999988776543
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.96 E-value=1.3e-09 Score=99.60 Aligned_cols=81 Identities=25% Similarity=0.500 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..++.|||.+|+..+...+|+++|++||.|..++++.+..+.-.++|+||.+.+...|.+||..||.+.|.|+-|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 35679999999999999999999999999999999999888888999999999999999999999999999999999887
Q ss_pred C
Q 018159 184 E 184 (360)
Q Consensus 184 ~ 184 (360)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 5
No 122
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.93 E-value=1.5e-09 Score=95.34 Aligned_cols=164 Identities=16% Similarity=0.253 Sum_probs=121.9
Q ss_pred ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceee
Q 018159 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
..++|++++.+.+.......++..+|. ...+.+... .....++|++++.|.....+..++...... .+.++.+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~-~~~~~~S~~-~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~--~~~~~~~~~d 163 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGL-RVDARSSSL-EDSLSSKGGLSVHFAGKSQFFAALEESGSK--VLDGNKGEKD 163 (285)
T ss_pred cccccccccccchhhccccccchhhcC-cccchhhhh-ccccccccceeeccccHHHHHHHHHhhhcc--ccccccccCc
Confidence 467889999999988888888888887 444444333 467789999999999999999998876432 2223332222
Q ss_pred ecCCCC----CCCccccccccceE-EEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHH
Q 018159 266 WADPKS----TPDHSAAASQVKAL-YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKA 338 (360)
Q Consensus 266 ~~~~~~----~~~~~~~~~~~~~l-~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A 338 (360)
...... ............++ +|+||++.++..+|+..|..+|.|..|+++....+. +|||||.|.+...+.+|
T Consensus 164 l~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 164 LNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred ccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 222111 11111122233444 499999999999999999999999999999888766 99999999999999999
Q ss_pred HHhhCCceeCCeeEeE
Q 018159 339 VKDTEKYEIDGKSHLH 354 (360)
Q Consensus 339 ~~~lng~~~~G~~l~v 354 (360)
+.. ++..+.|+++++
T Consensus 244 ~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 244 LND-QTRSIGGRPLRL 258 (285)
T ss_pred hhc-ccCcccCccccc
Confidence 997 888888887765
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=3.4e-09 Score=91.53 Aligned_cols=79 Identities=27% Similarity=0.482 Sum_probs=69.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHh-cCCCCCCcEEE
Q 018159 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIR 179 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~ 179 (360)
+......+|||++|-..+++.+|+++|.+||.|.+++++.. +++|||+|.+..+|..|.... +...|+|++|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 33446679999999989999999999999999999999876 559999999999999988654 66778999999
Q ss_pred EeecCc
Q 018159 180 CSLSET 185 (360)
Q Consensus 180 v~~~~~ 185 (360)
|.|+.+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999887
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=4.5e-09 Score=90.83 Aligned_cols=73 Identities=25% Similarity=0.411 Sum_probs=65.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh-hCCceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD-TEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~-lng~~~~G~~l~v~p 356 (360)
...++|||++|-..+++.+|++.|-+||.|..|++...+ ++|||+|.+..+|..|... +|...|+|++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 456899999999999999999999999999999998887 8999999999999887765 556788999999987
No 125
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.90 E-value=3.2e-09 Score=100.54 Aligned_cols=75 Identities=28% Similarity=0.566 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
.++||||++|+..+++.+|.++|..||.|.+|.++. ++|+|||.+.+..+|.+|+..|++..+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 678999999999999999999999999999999864 48899999999999999999999999999999999986
Q ss_pred c
Q 018159 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.85 E-value=3.9e-09 Score=92.66 Aligned_cols=162 Identities=20% Similarity=0.338 Sum_probs=130.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..+++|++++.+.+.+.++..++..+|....+.+.....+..++|++++.|...+.+..||.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46889999999999999999999999988888888877779999999999999999999996533334444433322211
Q ss_pred ----------------ccccee-ecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHH
Q 018159 185 ----------------TKNRLF-IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (360)
Q Consensus 185 ----------------~~~~l~-v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 247 (360)
+..++| ++++++.++.++|...|..+|. |..+++... ..++..+||+|+.|.....+.+++
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~-i~~~r~~~~-~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGE-ITSVRLPTD-EESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCc-ceeeccCCC-CCccchhhhhhhhhhhchhHHHHh
Confidence 123444 9999999999999999999998 999999888 688999999999999999998777
Q ss_pred HHHhcCCcccCCCCceeeecCCCC
Q 018159 248 QKMLNANFKLDGNTPTISWADPKS 271 (360)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~~~~~~ 271 (360)
.. ....+.++++.+....+..
T Consensus 245 ~~---~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 245 ND---QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hc---ccCcccCcccccccCCCCc
Confidence 64 3446777877777776654
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.83 E-value=8.2e-09 Score=94.50 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=69.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC--CCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~--~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...+.|||.+|...+-..+|+.+|++||+|+...++.+.. +-++||||++.+...|.+||..|+.+.+.|+.|.|...
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4467899999999999999999999999999877766543 33999999999999999999999999999999998643
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=8.6e-09 Score=89.18 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=70.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++.+.|||--|.+-+++++|.-+|+.||+|.++.++++..+. -.||||+|.+.+++.+|+=.|.+..|+.++|+|-
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3556899999999999999999999999999999888877655 7899999999999999999999999999999973
No 129
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.81 E-value=4.4e-08 Score=70.87 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=67.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcc--CCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCC----CcEEE
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK----GKTIR 179 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~----g~~l~ 179 (360)
++||+|+|||...|...|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|.+....++|..|. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 479999999999999999988754 367777889999999999999999999999999999999998875 34455
Q ss_pred EeecC
Q 018159 180 CSLSE 184 (360)
Q Consensus 180 v~~~~ 184 (360)
|.+|+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66654
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.81 E-value=1.9e-09 Score=94.31 Aligned_cols=203 Identities=14% Similarity=0.177 Sum_probs=127.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCC---CCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE---SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...|-|.||.+.+|.++++.||...|.|..+.++.... .......|||.|.+...+..|- .|.++++-++.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 34899999999999999999999999999999877432 2334568999999999999887 5788888888888766
Q ss_pred cCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCc
Q 018159 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (360)
Q Consensus 183 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~ 262 (360)
+... +-.... +|..++..-.-..++. ..| |.+.. .++..-|...
T Consensus 86 ~~~~-----------~~p~r~--af~~l~~~navprll~---pdg-------~Lp~~-------------~~lt~~nh~p 129 (479)
T KOG4676|consen 86 YGDE-----------VIPDRF--AFVELADQNAVPRLLP---PDG-------VLPGD-------------RPLTKINHSP 129 (479)
T ss_pred cCCC-----------CCccHH--HHHhcCcccccccccC---CCC-------ccCCC-------------CccccccCCc
Confidence 4311 111111 3333332000001100 000 10100 0000000000
Q ss_pred eeeecCCCCCCCc--cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHH
Q 018159 263 TISWADPKSTPDH--SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 263 ~v~~~~~~~~~~~--~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (360)
..-+..|...+.. .......++++|.+|+..+-..++...|..+|.|.+.++..+.. ..+|.|.|....+...|+.
T Consensus 130 ~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~--s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 130 NAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR--SSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred cceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC--CcchhhhHhhhhhHHHHHH
Confidence 0001112111111 11112247899999999999999999999999999888865543 3678899999999999999
Q ss_pred hhCCceeC
Q 018159 341 DTEKYEID 348 (360)
Q Consensus 341 ~lng~~~~ 348 (360)
++|+.+.
T Consensus 208 -~~gre~k 214 (479)
T KOG4676|consen 208 -SHGRERK 214 (479)
T ss_pred -hcchhhh
Confidence 4665554
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.79 E-value=2.1e-08 Score=84.87 Aligned_cols=80 Identities=25% Similarity=0.460 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
...+|+|.|||+.++..+|+++|..||.+..+.+..++. |++.|.|-|.|...++|.+|++.+++..++|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 347899999999999999999999999888888877765 9999999999999999999999999999999999887765
Q ss_pred c
Q 018159 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=7.2e-09 Score=99.78 Aligned_cols=153 Identities=18% Similarity=0.325 Sum_probs=124.8
Q ss_pred ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceee
Q 018159 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.++||++||+..+++.+|+..|..+|. +..+.|-+. ..++...|+|+.|.+...+-.|...+.+..+..+ .+.+.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gk-ve~VDiKtP--~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g--~~r~g 446 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGK-VEEVDIKTP--HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG--THRIG 446 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhcc-ccccccccC--CCCcccchhhhhhhccccCcccchhhcCCccccC--ccccc
Confidence 368999999999999999999999998 999988664 3456667899999999999888887766544322 22222
Q ss_pred ecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc
Q 018159 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
+..+ .....+.+++++|+..+....|.+.|..||.|..|.+..+. .||+|.|.+...|+.|+..|-|.
T Consensus 447 lG~~--------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 447 LGQP--------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred cccc--------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccchhhHHHHhcC
Confidence 2222 22456789999999999999999999999999999888776 79999999999999999999999
Q ss_pred eeCCeeEeEE
Q 018159 346 EIDGKSHLHF 355 (360)
Q Consensus 346 ~~~G~~l~v~ 355 (360)
.|+|-.-+++
T Consensus 515 p~G~P~~r~r 524 (975)
T KOG0112|consen 515 PLGGPPRRLR 524 (975)
T ss_pred cCCCCCcccc
Confidence 9987554443
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=8.2e-09 Score=99.43 Aligned_cols=161 Identities=19% Similarity=0.267 Sum_probs=134.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
....++|||++||+..+++.+|+..|..+|.|..|.|-.-+. +.-..||||.|.+...+-+|...+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 344788999999999999999999999999999998866543 5556689999999999999998888877765555555
Q ss_pred ec----CcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCccc
Q 018159 182 LS----ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257 (360)
Q Consensus 182 ~~----~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~ 257 (360)
+. .+.+.++++.|+.-+....|...|..||. |..|.+-. ...|+|+.|.+...+..|...+.+..+.-
T Consensus 447 lG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp-ir~Idy~h-------gq~yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 447 LGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP-IRIIDYRH-------GQPYAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred ccccccccceeeccCCCCCCChHHHHHHHhhccCc-ceeeeccc-------CCcceeeecccCccchhhHHHHhcCcCCC
Confidence 44 34578999999999999999999999998 88877644 35599999999999999999999888877
Q ss_pred CCCCceeeecCCCC
Q 018159 258 DGNTPTISWADPKS 271 (360)
Q Consensus 258 ~~~~~~v~~~~~~~ 271 (360)
..+.+.+.++.+..
T Consensus 519 P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 519 PPRRLRVDLASPPG 532 (975)
T ss_pred CCcccccccccCCC
Confidence 77888888876554
No 134
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.75 E-value=5.7e-08 Score=79.00 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=63.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCC-CCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeC---CeeEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP-GKSGK--RDFGFIHYAERSSALKAVKDTEKYEID---GKSHL 353 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~-~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~---G~~l~ 353 (360)
...+||||.+||.++...+|..+|..|-......|.. ++.++ +.+|||+|.+++.|..|++.|||..|+ |..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3468999999999999999999999997777665543 33333 789999999999999999999999997 66666
Q ss_pred EE
Q 018159 354 HF 355 (360)
Q Consensus 354 v~ 355 (360)
+.
T Consensus 112 iE 113 (284)
T KOG1457|consen 112 IE 113 (284)
T ss_pred ee
Confidence 54
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.72 E-value=5.1e-08 Score=82.50 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=69.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
..+|.|.|||+.|+..+|+++|..||.+..+-+-.++.+. .|.|-|.|...++|.+|++.+||..++|+.|.+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 4689999999999999999999999999999998888877 8999999999999999999999999999998764
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.72 E-value=2.6e-08 Score=91.17 Aligned_cols=80 Identities=23% Similarity=0.461 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
...+|||+|||++++...|+++|++||.|....|......+++.+||||+|.+..+++.||.+ +...++|++|.|..-+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 445699999999999999999999999999998877654466669999999999999999975 6888999999998754
Q ss_pred c
Q 018159 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
+
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.3e-08 Score=93.49 Aligned_cols=72 Identities=26% Similarity=0.425 Sum_probs=65.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
..+..+|+|.|||..|+..+|+.+|+.||.|+.|+.-+.+ +|..||+|-+.-+|++|++.||++.|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3567899999999999999999999999999998776555 48999999999999999999999999999887
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.72 E-value=6.7e-08 Score=69.91 Aligned_cols=66 Identities=15% Similarity=0.359 Sum_probs=58.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018159 283 KALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~--~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
+||+|+|||...|.++|.+++.. .|....+.+|.+..+. .|||||-|.+++.|.+-.+.++|+.|.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 58999999999999999999876 3677788888876554 999999999999999999999999986
No 139
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.66 E-value=1.4e-08 Score=84.33 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=64.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCC--------CCcce----EEEEEecCHHHHHHHHHHhcCCC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------GESKG----FAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~--------~~~~g----~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
....||+++||+.+...-|+++|++||.|-+|.+-....+ |.+++ -|||+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4688999999999999999999999999999998876654 33333 28999999999999999999999
Q ss_pred CCCcEE
Q 018159 173 LKGKTI 178 (360)
Q Consensus 173 ~~g~~l 178 (360)
|+|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998764
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.64 E-value=6e-08 Score=82.39 Aligned_cols=80 Identities=29% Similarity=0.451 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+.+.+||+|+.+.+|..++...|+.||.|..+.++.++.+|.++|||||+|.+...+..++. |++..+.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356789999999999999999999999999999999999999999999999999999999997 9999999999999876
Q ss_pred C
Q 018159 184 E 184 (360)
Q Consensus 184 ~ 184 (360)
+
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 5
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.61 E-value=3.6e-08 Score=81.78 Aligned_cols=85 Identities=25% Similarity=0.438 Sum_probs=78.2
Q ss_pred hcCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 100 ~~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
...+.+..+||.+.|..+++.+-|...|++|-.....++++++.||+++||+||.|.+..++..|+..|+|.+++.+.|.
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EeecC
Q 018159 180 CSLSE 184 (360)
Q Consensus 180 v~~~~ 184 (360)
+..+.
T Consensus 264 lRkS~ 268 (290)
T KOG0226|consen 264 LRKSE 268 (290)
T ss_pred hhhhh
Confidence 76554
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.61 E-value=6.6e-08 Score=88.51 Aligned_cols=72 Identities=21% Similarity=0.463 Sum_probs=62.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.+|||.|||.+++..+|.++|..||.|+...|.....+. .+||||+|.+..++..||.+ +-..++|++|.|.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 459999999999999999999999999987776544222 49999999999999999996 5888999999885
No 143
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.60 E-value=5.2e-08 Score=80.83 Aligned_cols=138 Identities=9% Similarity=0.192 Sum_probs=92.0
Q ss_pred eeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCCCCCccccccccceEEEcCCCCC
Q 018159 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN 293 (360)
Q Consensus 214 i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~ 293 (360)
+..-.++++ ..+.-++++|+.|.....-.++-..-+++ ++..+.+.......--.+.-..-.....+||.+-|...
T Consensus 126 L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~K--ki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNe 201 (290)
T KOG0226|consen 126 LVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKK--KIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNE 201 (290)
T ss_pred hhhhhhhhc--CCCccCcccccCcchhhhhhhhccccccc--cccCcceeeccccccCCcccccCccccceeeccccccc
Confidence 333344443 34566778888887665555444433322 22222222211111111111112234578999999999
Q ss_pred CCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 294 TSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 294 ~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
++++-|-..|.+|-.....++.+++.+. +|||||.|.++.++.+|++.|||.-++.|.|.++
T Consensus 202 vnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 202 VNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 9999999999999888777777666544 9999999999999999999999999999888765
No 144
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.60 E-value=1.5e-07 Score=81.56 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=69.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
.++.|||+|||.++|.+++.++|++||.|. .|.|.++..|. +|=|.+.|-..+++..|++.|++..|.|++
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 356699999999999999999999999776 37888888877 999999999999999999999999999999
Q ss_pred EeEEee
Q 018159 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|+|...
T Consensus 213 ~rVerA 218 (382)
T KOG1548|consen 213 LRVERA 218 (382)
T ss_pred EEEehh
Confidence 999653
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.56 E-value=5.3e-07 Score=61.96 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=46.6
Q ss_pred ceEEEcCCCCCCCHHHH----HHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 283 KALYVKNIPDNTSTEKI----KELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L----~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..|+|.|||.+.+...| ++++..|| +|..|. + +.|+|.|.+++.|.+|++-|+|..+.|++|.|.-.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---~-----~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---G-----GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T-----T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---C-----CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 36999999999988655 56666786 666663 1 67999999999999999999999999999998643
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=4.4e-08 Score=79.44 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=71.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...+||||.|+-..|+++-|.++|-+-|.|..|.|+.++.+...||||.|.+.-+..-|++.|||..+.++.+.+.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345799999999999999999999999999999999999888449999999999999999999999999999888763
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.48 E-value=1e-06 Score=60.63 Aligned_cols=70 Identities=26% Similarity=0.534 Sum_probs=48.3
Q ss_pred CEEEEcCCCCCCCHHHHHH----hhccCC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 107 SEVFIGGLPKDASEEDLRD----LCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~----~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
..|+|.|||.+.....|+. ++..+| .|..|. .+.|+|.|.+++.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999998887654 555776 676551 3579999999999999999999999999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98643
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.43 E-value=5.4e-07 Score=66.89 Aligned_cols=71 Identities=28% Similarity=0.394 Sum_probs=47.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC-----ceeCCeeEeEEee
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-----YEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng-----~~~~G~~l~v~p~ 357 (360)
..|.|.+++..++.++|+..|++||.|.+|.+..+. ..|||.|.+++.|++|+..+.- ..+.+..+.+..|
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 478999999999999999999999999999998877 6899999999999999998764 4677777766554
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.43 E-value=3.2e-07 Score=78.00 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=71.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...+.+||+|+.+.+|.+++...|+.||.|..|.|+.++... +|||||+|.+...+..|+. |||..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345689999999999999999999999999999999888664 9999999999999999999 9999999999998775
Q ss_pred e
Q 018159 358 F 358 (360)
Q Consensus 358 ~ 358 (360)
.
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.29 E-value=1.2e-06 Score=82.69 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=67.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-----CCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-----GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-----~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
+..+.|||+||++.+++..|...|..||+|.+|+|+-.+. ..+.||||.|-+..+|.+|++.|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 3467899999999999999999999999999988764331 12789999999999999999999999998888876
Q ss_pred Eee
Q 018159 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
-|-
T Consensus 252 gWg 254 (877)
T KOG0151|consen 252 GWG 254 (877)
T ss_pred ccc
Confidence 553
No 151
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=1e-06 Score=72.99 Aligned_cols=67 Identities=21% Similarity=0.435 Sum_probs=61.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+||++||+.+.+.+|..+|..||.|..|.+.. |||||.|.+..+|..|+..|||..|.|-.+.|.+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEH 69 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeec
Confidence 689999999999999999999999999888754 7899999999999999999999999998866554
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.22 E-value=2.9e-06 Score=80.20 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCC---CCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK---ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~---~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
.+..+.|||+||++.+++..|..-|..||+|.+++|+--+ ...+.+-+|||-|-+..+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3466789999999999999999999999999999875322 1234466899999999999999999999999999999
Q ss_pred EeecC
Q 018159 180 CSLSE 184 (360)
Q Consensus 180 v~~~~ 184 (360)
+-|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98874
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.15 E-value=4.5e-06 Score=72.15 Aligned_cols=90 Identities=21% Similarity=0.409 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCHHH----H--HHhhccCCcEEEEEEeeCCCCCCc-ce--EEEEEecCHHHHHHHHHHhcCCCCCC
Q 018159 105 NGSEVFIGGLPKDASEED----L--RDLCEPIGDVFEVRLMKDKESGES-KG--FAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~----l--~~~f~~~G~i~~~~~~~~~~~~~~-~g--~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
...-+||-+||+.+..++ | .++|.+||.|..|.+-+...+..+ .+ -.||.|.+.++|.+||+..+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999999987776 3 369999999998877654322211 22 24999999999999999999999999
Q ss_pred cEEEEeecCcc-cceeecCC
Q 018159 176 KTIRCSLSETK-NRLFIGNV 194 (360)
Q Consensus 176 ~~l~v~~~~~~-~~l~v~nl 194 (360)
|.|+..+...+ .+.|++|+
T Consensus 193 r~lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNA 212 (480)
T ss_pred ceEeeecCchHHHHHHHcCC
Confidence 99999887654 34445444
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.15 E-value=2.9e-07 Score=81.67 Aligned_cols=150 Identities=18% Similarity=0.292 Sum_probs=117.2
Q ss_pred cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeee
Q 018159 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
+.+|++||....+..+|..+|...--....-.++ ..||+||.+.+...|.+++..++++ ..+.|....+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--------k~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--------KSGYAFVDCPDQQWANKAIETLSGK-VELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--------ecceeeccCCchhhhhhhHHhhchh-hhhcCceeeccc
Confidence 4689999999999999999998653212222222 3579999999999999999998764 567888888877
Q ss_pred cCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce
Q 018159 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
..+... .++.+.|+|+|...-++.|..++..||.|..+........ .-..-|+|.+.+.+..|+..|||.+
T Consensus 73 sv~kkq--------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e-tavvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 73 SVPKKQ--------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE-TAVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred hhhHHH--------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH-HHHHHHHHHHHHHHHHHHHhhcchH
Confidence 766653 3557999999999999999999999999998765432211 1234679999999999999999998
Q ss_pred eCCeeEeE
Q 018159 347 IDGKSHLH 354 (360)
Q Consensus 347 ~~G~~l~v 354 (360)
+....+.+
T Consensus 144 ~en~~~k~ 151 (584)
T KOG2193|consen 144 LENQHLKV 151 (584)
T ss_pred hhhhhhhc
Confidence 87665544
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.10 E-value=1.2e-05 Score=59.77 Aligned_cols=59 Identities=25% Similarity=0.439 Sum_probs=39.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCC
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~ 171 (360)
+.|+|.+++..++.++|+.+|++||.|..|-+.+... .|||.|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999988876432 6999999999999999877544
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.05 E-value=2.8e-05 Score=56.77 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=51.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-cCCC--------CCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeE
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVV-MPPG--------KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSH 352 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~-i~~~--------~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l 352 (360)
.+.|.|-+.|... -..|.+.|++||.|.... +... .........|+|.++.+|.+||+ .||..|.|..|
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 4568899999874 567888999999998775 1111 01113788999999999999999 59999998654
Q ss_pred -eEEee
Q 018159 353 -LHFPV 357 (360)
Q Consensus 353 -~v~p~ 357 (360)
-|+|+
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 46665
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.00 E-value=5.8e-06 Score=72.49 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=68.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
....+|||.+||..++..+|..+|.+||.|.. |.|.+++.+. ||-|.|+|.++..|+.|+..++++.|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 44568999999999999999999999998862 5555565544 8999999999999999999999999999
Q ss_pred eeEeEEeee
Q 018159 350 KSHLHFPVF 358 (360)
Q Consensus 350 ~~l~v~p~~ 358 (360)
.+|.|..+.
T Consensus 144 n~ikvs~a~ 152 (351)
T KOG1995|consen 144 NTIKVSLAE 152 (351)
T ss_pred CCchhhhhh
Confidence 999887653
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.00 E-value=6.3e-06 Score=72.30 Aligned_cols=84 Identities=32% Similarity=0.510 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEE--------EEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
....+|||.+||..++..+|..+|.++|.|. .|.+.+++.|++++|-|.|.|.+...|+.|+..+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3467899999999999999999999999773 36788889999999999999999999999999999999999
Q ss_pred cEEEEeecCccc
Q 018159 176 KTIRCSLSETKN 187 (360)
Q Consensus 176 ~~l~v~~~~~~~ 187 (360)
.+|.|..+...+
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998887544
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=2.8e-05 Score=71.89 Aligned_cols=74 Identities=20% Similarity=0.370 Sum_probs=60.2
Q ss_pred cceEEEcCCCCCCCH------HHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeC-CeeEe
Q 018159 282 VKALYVKNIPDNTST------EKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEID-GKSHL 353 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~------~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~-G~~l~ 353 (360)
...|+|-|+|---.. .-|.++|+++|+|..+.+|.+..|+ +||.|++|.+..+|..|++.|||+.|+ .++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 468999999842221 3456789999999999999877766 999999999999999999999999886 45555
Q ss_pred EE
Q 018159 354 HF 355 (360)
Q Consensus 354 v~ 355 (360)
|+
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 44
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.93 E-value=1.5e-05 Score=71.23 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=57.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCC---C----CC--------CCCeEEEEeCCHHHHHHHHHhhCC
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG---K----SG--------KRDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~---~----~~--------~kg~afV~F~~~~~A~~A~~~lng 344 (360)
.++++|.+-|||.+-..+-|.++|+.||.|..|+|... . .. .+-+|+|+|.+...|.+|...||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999989999999999999999999754 1 00 145789999999999999999876
Q ss_pred ceeC
Q 018159 345 YEID 348 (360)
Q Consensus 345 ~~~~ 348 (360)
..-.
T Consensus 309 e~~w 312 (484)
T KOG1855|consen 309 EQNW 312 (484)
T ss_pred hhhh
Confidence 5443
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.92 E-value=6.2e-06 Score=68.82 Aligned_cols=71 Identities=21% Similarity=0.445 Sum_probs=60.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC----------C--CC--eEEEEeCCHHHHHHHHHhhCCce
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----------K--RD--FGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~----------~--kg--~afV~F~~~~~A~~A~~~lng~~ 346 (360)
..-.||++|||+.++...|+++|+.||.|-+|.+-+.... + .- -|.|+|.+...|.++...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999998654321 1 12 27999999999999999999999
Q ss_pred eCCee
Q 018159 347 IDGKS 351 (360)
Q Consensus 347 ~~G~~ 351 (360)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99986
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.89 E-value=4.1e-05 Score=49.11 Aligned_cols=52 Identities=23% Similarity=0.496 Sum_probs=43.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHH
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (360)
+.|.|.+.|....+ .+...|..||.|..+.++... .+++|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 57889999977754 556689999999999998444 68999999999999986
No 163
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.82 E-value=4.4e-06 Score=74.36 Aligned_cols=137 Identities=23% Similarity=0.340 Sum_probs=105.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCc-EEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC-CCCcEEEEeecC
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIRCSLSE 184 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~~~ 184 (360)
..+|++||.+.++..+|..+|..... ...-.++ ..||+||.+.+..-|.+|++.++|.. +.|+++.|..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 35899999999999999999976521 1111122 25799999999999999999999864 899999988776
Q ss_pred cc----cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCc
Q 018159 185 TK----NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255 (360)
Q Consensus 185 ~~----~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~ 255 (360)
++ +.+-|+|+|....++-|..+...||. +..|..+.. ..-.-..-|+|.+.+.+..++..+++..+
T Consensus 75 ~kkqrsrk~Qirnippql~wevld~Ll~qyg~-ve~~eqvnt----~~etavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 75 PKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT-VENCEQVNT----DSETAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred hHHHHhhhhhHhcCCHHHHHHHHHHHHhccCC-HhHhhhhcc----chHHHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 53 67999999999999999999999998 777766432 11122334577788888888887775543
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.77 E-value=0.00017 Score=55.88 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=52.8
Q ss_pred cccceEEEcCCC------CCCCH---HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018159 280 SQVKALYVKNIP------DNTST---EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 280 ~~~~~l~V~nlp------~~~t~---~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
++..||.|+-+. ..+.+ .+|.+.|..||.|.=||+..+ .-+|+|.+-.+|.+|+. |+|.+++|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHc-cCCcEECCE
Confidence 334577776555 12332 477788999999988888764 48999999999999999 899999999
Q ss_pred eEeEEe
Q 018159 351 SHLHFP 356 (360)
Q Consensus 351 ~l~v~p 356 (360)
.|+|++
T Consensus 98 ~l~i~L 103 (146)
T PF08952_consen 98 TLKIRL 103 (146)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999986
No 165
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.76 E-value=1.5e-05 Score=66.85 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=54.7
Q ss_pred HHHHHHHh-hcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018159 297 EKIKELFQ-RHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 297 ~~L~~~f~-~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
++|+..|. +||.|..+.+..+-... .|-+||.|...++|.+|+..|||++|.|++|.+.-+.|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 56777777 89999999887665444 78899999999999999999999999999999887766
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.70 E-value=9.7e-05 Score=64.13 Aligned_cols=73 Identities=23% Similarity=0.469 Sum_probs=59.3
Q ss_pred cceEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEcCCCCCCC---CC-eE-EEEeCCHHHHHHHHHhhCCceeCCe
Q 018159 282 VKALYVKNIPDNTSTEKI------KELFQRHGEVTKVVMPPGKSGK---RD-FG-FIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L------~~~f~~~G~v~~v~i~~~~~~~---kg-~a-fV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
.+-+||-+||..+-.+++ .++|.+||.|..|.+.+..... .+ +| ||+|.+.++|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999988877663 5789999999999886554221 33 32 9999999999999999999999999
Q ss_pred eEeE
Q 018159 351 SHLH 354 (360)
Q Consensus 351 ~l~v 354 (360)
.|+.
T Consensus 194 ~lka 197 (480)
T COG5175 194 VLKA 197 (480)
T ss_pred eEee
Confidence 9875
No 167
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.69 E-value=6e-05 Score=66.73 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=64.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-----CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018159 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-----RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-----kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
.|.|.||.++++.++++.+|...|+|..++|+...... .-.|||.|.+...+..|.. |.++.|=++.|.|.|+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 89999999999999999999999999999987654322 5579999999999998877 78888889999999863
No 168
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.65 E-value=8e-05 Score=64.91 Aligned_cols=80 Identities=19% Similarity=0.385 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....+||+||-|.+|.++|.+.+...| .+..++++.++.+|.++|||.|...+..+.++.+..|-...|.|+.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 455899999999999999999988887 678889999999999999999999999999999998888889998766655
Q ss_pred cC
Q 018159 183 SE 184 (360)
Q Consensus 183 ~~ 184 (360)
++
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 43
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.58 E-value=0.00018 Score=46.15 Aligned_cols=52 Identities=17% Similarity=0.500 Sum_probs=42.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHH
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~ 165 (360)
+.|-|.+.|++..+ .+..+|..||.|..+.+... ..++||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 57889999988765 55668889999999888622 347999999999999985
No 170
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.0003 Score=64.80 Aligned_cols=64 Identities=31% Similarity=0.440 Sum_probs=59.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhc-cCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHH
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~ 167 (360)
..++||||++||.-++..+|..+|. -||.|..+-|-.|+.-+.++|-|=|.|.+..+-.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4688999999999999999999998 699999999999987789999999999999999999964
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.36 E-value=0.00053 Score=58.58 Aligned_cols=60 Identities=23% Similarity=0.202 Sum_probs=48.6
Q ss_pred HHHHHHHhhcCCeeEEEcCCCCCCC---CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 297 EKIKELFQRHGEVTKVVMPPGKSGK---RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 297 ~~L~~~f~~~G~v~~v~i~~~~~~~---kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.++...|.+||.|..|.|.-..+.. ---.||+|...++|.+|+-.|||+.|+||.+...-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 5778899999999998775443222 22369999999999999999999999999987543
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.29 E-value=0.00045 Score=58.03 Aligned_cols=101 Identities=21% Similarity=0.338 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCcccCCCCceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-
Q 018159 243 ADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321 (360)
Q Consensus 243 a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~- 321 (360)
|..|...|.+ ....++.+.+.++.. ..|+|.||+..++.+.|.+.|+.||.|....+..+-.+.
T Consensus 7 ae~ak~eLd~--~~~~~~~lr~rfa~~-------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~ 71 (275)
T KOG0115|consen 7 AEIAKRELDG--RFPKGRSLRVRFAMH-------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP 71 (275)
T ss_pred HHHHHHhcCC--CCCCCCceEEEeecc-------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc
Confidence 4444455543 355678888887754 389999999999999999999999999865544443333
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCC----ceeCCeeEeEEeee
Q 018159 322 RDFGFIHYAERSSALKAVKDTEK----YEIDGKSHLHFPVF 358 (360)
Q Consensus 322 kg~afV~F~~~~~A~~A~~~lng----~~~~G~~l~v~p~~ 358 (360)
.+-++|.|...-.|.+|+..++- ....|+...|-|+-
T Consensus 72 t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 72 TREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred cccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 67789999999999999998852 44556666666653
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00092 Score=62.23 Aligned_cols=77 Identities=32% Similarity=0.424 Sum_probs=61.9
Q ss_pred CCCEEEEcCCCCC--CCHH----HHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC-cE
Q 018159 105 NGSEVFIGGLPKD--ASEE----DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KT 177 (360)
Q Consensus 105 ~~~~i~v~nLp~~--~t~~----~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g-~~ 177 (360)
-...|+|-|+|-- ...+ -|..+|+++|+|....++.+.. |..+||.|++|.+..+|..|++.|||..|.- ++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4578999999953 2222 3567899999999999998887 4599999999999999999999999988754 55
Q ss_pred EEEee
Q 018159 178 IRCSL 182 (360)
Q Consensus 178 l~v~~ 182 (360)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 55543
No 174
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.19 E-value=0.00072 Score=63.25 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=64.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhc-cCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCC---CCcE
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKT 177 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~---~g~~ 177 (360)
..+.+..|+|.||-...|.-.|+.++. ..|.|...+| + +-+..|||.|.+.+.|...+.+|||..| +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 335677999999999999999999998 5667777744 3 2356799999999999999999999887 5788
Q ss_pred EEEeecCcc
Q 018159 178 IRCSLSETK 186 (360)
Q Consensus 178 l~v~~~~~~ 186 (360)
|.+.|....
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 999887654
No 175
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=0.0012 Score=55.47 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEec
Q 018159 159 EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238 (360)
Q Consensus 159 ~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~ 238 (360)
.-|..|-..|.+....|+.++|.++.. ..|+|.||+..++.+.+.+.|+.||+ |....++-+ ..+++.+-+.|.|.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFA 80 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhh
Confidence 446667777899999999999999987 99999999999999999999999998 777666655 35677778899999
Q ss_pred ChHHHHHHHHHHhcCC
Q 018159 239 NNACADYSRQKMLNAN 254 (360)
Q Consensus 239 ~~~~a~~a~~~~~~~~ 254 (360)
+...+.+|+...+...
T Consensus 81 ~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 81 KKPNARKAARRCREGG 96 (275)
T ss_pred cchhHHHHHHHhccCc
Confidence 9999999998875443
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.11 E-value=0.00047 Score=61.99 Aligned_cols=66 Identities=29% Similarity=0.421 Sum_probs=55.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeC---CCC--CCc--------ceEEEEEecCHHHHHHHHHHhcC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD---KES--GES--------KGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~---~~~--~~~--------~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
.+++|.+-|||.+-.-+.|.++|..+|.|..|+|+.- +.. |.. +-+|+|+|.....|.+|.+.++.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 6789999999999888999999999999999999875 222 222 34599999999999999987754
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.05 E-value=0.0022 Score=49.81 Aligned_cols=73 Identities=23% Similarity=0.397 Sum_probs=52.7
Q ss_pred CCCCEEEEcCCCC-----CCCHH----HHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCC
Q 018159 104 PNGSEVFIGGLPK-----DASEE----DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 104 ~~~~~i~v~nLp~-----~~t~~----~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
++..||.|+=+.+ ..-.+ .|.+.|..||.+.-++++.+ .-||.|.+-++|.+|+. ++|..+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 4556777776661 12233 56678899999988888754 48999999999999995 8999999
Q ss_pred CcEEEEeecCc
Q 018159 175 GKTIRCSLSET 185 (360)
Q Consensus 175 g~~l~v~~~~~ 185 (360)
|+.|+|..-.+
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999988654
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.96 E-value=0.0057 Score=42.39 Aligned_cols=56 Identities=25% Similarity=0.521 Sum_probs=41.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcC
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
....+|. .|..+...+|.++|++||.|. |..+-+. .|||...+.+.|..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4556666 999999999999999999984 4444443 599999999999999987753
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.89 E-value=0.0047 Score=45.14 Aligned_cols=76 Identities=11% Similarity=0.192 Sum_probs=50.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEe-eCC------CCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLM-KDK------ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~-~~~------~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.+.|.|-+.|+. ....|..+|++||.|....-. +.. ..........|.|.++.+|.+||. .||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 567999999988 456788999999998777511 100 001123378999999999999995 59999988765
Q ss_pred E-Eeec
Q 018159 179 R-CSLS 183 (360)
Q Consensus 179 ~-v~~~ 183 (360)
- |.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 4 5555
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.89 E-value=0.0011 Score=62.16 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=57.9
Q ss_pred cccccceEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCcee---CCeeEe
Q 018159 278 AASQVKALYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI---DGKSHL 353 (360)
Q Consensus 278 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~-~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~---~G~~l~ 353 (360)
....++.|+|.||-..+|.-+|+.++.+ +|.|...-|..- |..|||.|.+.+.|.....+|||.+| +++.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 4567899999999999999999999994 666666533222 36799999999999999999999988 344444
No 181
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.69 E-value=0.0017 Score=53.09 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=46.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcc-CCcE---EEEEEeeCCCC-C-CcceEEEEEecCHHHHHHHHHHhcCCCCCC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEP-IGDV---FEVRLMKDKES-G-ESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~-~G~i---~~~~~~~~~~~-~-~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
...+|.||+||+.+|++++...+++ ++.. ..+.-.....+ + ...+-|||.|.+.+.+......++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4678999999999999999998887 7765 33331122111 1 123459999999999999999999977643
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.40 E-value=0.028 Score=41.91 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=50.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
..+.+-..|..++-..|..+...+- .|..++|+++...++-.+.+.|.+..+|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444455556566667766666654 566788888776667789999999999999999999999874
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.39 E-value=0.0093 Score=51.22 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=51.3
Q ss_pred HHHHHhhccCCcEEEEEEeeCCCCCCcc-eEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 121 EDLRDLCEPIGDVFEVRLMKDKESGESK-GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 121 ~~l~~~f~~~G~i~~~~~~~~~~~~~~~-g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
++++.-+.+||.|..|.|...+.-.-.. ---||+|...++|.+|+-.|||.+|+||.++..+.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3567788999999999988775322211 237999999999999999999999999999876654
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.36 E-value=0.025 Score=43.45 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=55.1
Q ss_pred cccceEEEcCCCCCCCH----HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~----~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.+-.||.|+-|..++.. ..+.+.++.||+|.+|.+.- + ..|.|.|.+..+|=+|+.++.. ..-|..+++.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-r----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-R----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-C----ceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 34568999888777644 34556678899999998853 2 5799999999999999998776 5567777776
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
|.
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 54
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.36 E-value=0.0017 Score=54.77 Aligned_cols=62 Identities=27% Similarity=0.425 Sum_probs=51.3
Q ss_pred HHHHhhc-cCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 122 DLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 122 ~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+|...|. +||.|..+++..+.. -...|-+||.|...++|++|++.||+..+.|++|+..++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3443444 899999998776542 4568889999999999999999999999999999998865
No 186
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.33 E-value=0.013 Score=53.46 Aligned_cols=68 Identities=7% Similarity=0.167 Sum_probs=60.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
++.|+|-.+|..++-.+|..++..|- .|..++|+++....+-.+.|.|.+..+|...+..+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77999999999999999999998764 677899888665557778999999999999999999999974
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.17 E-value=0.035 Score=36.52 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=45.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRH---GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~---G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (360)
..|+|+++. .++..+|+.+|..| ....+|..+.+. .|-|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHcC
Confidence 479999986 48889999999999 235578887775 5899999999999999865
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.14 E-value=0.025 Score=39.30 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=40.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC
Q 018159 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng 344 (360)
..+|+ .|..+-..+|.++|+.||.|. |..+.+ ..|||...+.+.|..|+..++.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-----TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-----CcEEEEeecHHHHHHHHHHhcc
Confidence 44444 999999999999999999876 555555 4799999999999999998763
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.04 E-value=0.0074 Score=49.42 Aligned_cols=69 Identities=9% Similarity=0.054 Sum_probs=46.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEE--cCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQR-HGEV---TKVV--MPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~-~G~v---~~v~--i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
...|.|++||+++|++++...++. ++.- .++. ........ -.-|||.|.+.+++..-...++|+.|-..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 458999999999999999987776 5544 3333 22221111 34589999999999999999999877433
No 190
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.99 E-value=0.0088 Score=52.55 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=63.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEcCCCC-CCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~--v~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++||+||-..+|+++|.+.+...|. +..+++..++ +|. ||||+|...+..+.++.+..|-.+.|.|..-.|.++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 458999999999999999999988773 3345544333 344 999999999999999999999999999999888876
Q ss_pred e
Q 018159 358 F 358 (360)
Q Consensus 358 ~ 358 (360)
.
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 4
No 191
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.91 E-value=0.0076 Score=57.53 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=63.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+..++||+|+-..+..+-++.+...||.|.++.... |||..|..+..+.+|+..++-..++|..+.+.+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4566999999999999999999999999998877653 899999999999999999999999999887765
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=0.072 Score=46.17 Aligned_cols=69 Identities=30% Similarity=0.391 Sum_probs=54.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCee-EeEEee
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS-HLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~-l~v~p~ 357 (360)
.=|.|.++|..- -..|..+|.+||.|........- .+.+|.|.+..+|.+||. .||+.|+|.. |-|+||
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCCC----ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 346677777644 45788899999999987776332 689999999999999999 5999998765 456665
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.39 E-value=0.082 Score=34.78 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=43.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccC---CcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHh
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPI---GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~---G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l 168 (360)
.+|+|+|+. .++-++|+.+|..| ....+|..+-+. .|=|.|.+...|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999995 58888999999998 134577777665 4899999999999999754
No 194
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.11 Score=49.15 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=57.3
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhccC----CcEEEEEEeeCC----------CCCC---------------------
Q 018159 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKDK----------ESGE--------------------- 146 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~-~t~~~l~~~f~~~----G~i~~~~~~~~~----------~~~~--------------------- 146 (360)
...+++|-|-||.|+ +...+|.-+|+.| |.|.+|.|+... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 346788999999998 7888998888765 589999886532 1122
Q ss_pred ---------------c-ceEEEEEecCHHHHHHHHHHhcCCCCCCcE
Q 018159 147 ---------------S-KGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (360)
Q Consensus 147 ---------------~-~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~ 177 (360)
. .=||.|+|.+...|.+....+.|..+....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 1 126899999999999999999998875433
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.33 E-value=0.0097 Score=52.39 Aligned_cols=80 Identities=23% Similarity=0.400 Sum_probs=62.4
Q ss_pred CCEEEEcCCCCCCCHHHHH---HhhccCCcEEEEEEeeCCC--CCC-cceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 106 GSEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKE--SGE-SKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~--~~~-~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
..-+||-+||.....+.+. .+|.+||.|..+.+.++.. ++. ....+||.|...+.|..||...+|..+.|+.|.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4568899999887655553 5899999999998887662 111 122389999999999999999999999999987
Q ss_pred EeecCc
Q 018159 180 CSLSET 185 (360)
Q Consensus 180 v~~~~~ 185 (360)
..+...
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 766544
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.32 E-value=0.1 Score=40.20 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=55.9
Q ss_pred CCCCCEEEEcCCCCCCC-HHH---HHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 103 PPNGSEVFIGGLPKDAS-EED---LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t-~~~---l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.++-.||.|+=|...+. .++ |...++.||+|.+|.++ |+. .|.|.|.+..+|-+|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Grq--savVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GRQ--SAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CCc--eEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 34567899987776653 334 44567889999999886 443 599999999999999988765 5567788
Q ss_pred EEeecC
Q 018159 179 RCSLSE 184 (360)
Q Consensus 179 ~v~~~~ 184 (360)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 877754
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.04 E-value=0.02 Score=52.48 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=61.7
Q ss_pred ccceEEEcCCCCCCC-HHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018159 281 QVKALYVKNIPDNTS-TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t-~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
..+.|-+.-.|+.++ ..+|-..|.+||.|..|.+.... -.|.|+|.+...|-.|.. ..+..|++|-|+|+|..+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 345677777776664 48999999999999998886653 458999999999988888 589999999999999875
No 198
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.99 E-value=0.31 Score=36.37 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=48.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCC
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
..+-+-..|.-++.+.|..+...+- .|..++++++.. .++-.+.+.|.++..|......+||..++
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444444455556666766666654 678889988753 34556899999999999999999998765
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.95 E-value=0.089 Score=43.26 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=45.2
Q ss_pred CHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC--CceeCCeeEeEE
Q 018159 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGKSHLHF 355 (360)
Q Consensus 295 t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~~~G~~l~v~ 355 (360)
....|+.+|..|+.+..+...+.- +-..|.|.+.+.|.+|...|+ +..|.|..+++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~y 66 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVY 66 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEE
Confidence 347899999999988887766554 468999999999999999999 999999998774
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.19 E-value=0.033 Score=51.19 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=65.1
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 105 NGSEVFIGGLPKDA-SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nLp~~~-t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+.+.|-+.-.|+.. |-.+|..+|.+||.|..|.+-.. .-.|.|.|.+...|-.|. +.++..|+||.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 45567777777774 56789999999999999987544 225999999999998887 46999999999999998
Q ss_pred CcccceeecCCCCC
Q 018159 184 ETKNRLFIGNVPKN 197 (360)
Q Consensus 184 ~~~~~l~v~nlp~~ 197 (360)
++.. +.|+|.-
T Consensus 444 nps~---~tn~pav 454 (526)
T KOG2135|consen 444 NPSP---VTNIPAV 454 (526)
T ss_pred cCCc---ccCcccC
Confidence 8755 4555443
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.99 E-value=0.27 Score=32.91 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=42.4
Q ss_pred CCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 117 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
.++-.+|+..++.|+-. ++..++ .| -||.|.+..+|.+|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47888999999999743 233333 33 499999999999999999988887766643
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.88 E-value=0.022 Score=50.21 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=55.6
Q ss_pred ceEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEcCCCCC--CC---CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018159 283 KALYVKNIPDNTSTEKIK---ELFQRHGEVTKVVMPPGKS--GK---RDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~---~~f~~~G~v~~v~i~~~~~--~~---kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
+-++|-+||..+-.+.+. ..|.+||.|..|.+..+.. .. ..-++|+|...++|..||...+|..+.|+.|.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457778888777665553 5788999999998877652 11 33479999999999999999999999998743
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.87 E-value=0.33 Score=33.44 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHhhcCCe-----eEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 292 DNTSTEKIKELFQRHGEV-----TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 292 ~~~t~~~L~~~f~~~G~v-----~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++..+|..++...+.| -.|.|.. .|+||+-... .|..++..|++..+.|++|.|.++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 567888999988887544 4677754 4789988766 888999999999999999999874
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.82 E-value=0.12 Score=42.45 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=46.0
Q ss_pred CHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhc--CCCCCCcEEEEeecCc
Q 018159 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCSLSET 185 (360)
Q Consensus 119 t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~ 185 (360)
....|+++|..|+.+..+.+++.. +-..|.|.+.+.|.+|...|+ +..+.|..++|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 347899999999999888887653 358999999999999999999 8999999999988853
No 205
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.61 E-value=0.13 Score=48.28 Aligned_cols=70 Identities=20% Similarity=0.325 Sum_probs=57.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcc--CCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcC--CCCCCcEEE
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (360)
..++.|.|+-||..+..+.|+.||+. +-++.+|.+-.+.. =||.|.+..+|+.|...|.. ..|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 45678899999999999999999976 67888998866542 69999999999999988754 446777664
Q ss_pred E
Q 018159 180 C 180 (360)
Q Consensus 180 v 180 (360)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 3
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.46 E-value=0.22 Score=45.76 Aligned_cols=71 Identities=17% Similarity=0.379 Sum_probs=59.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
+..++.|.|-.+|..+|..||..|+..+- .|.+++++++.. .++=.+.|.|.+..+|......+||..++.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 33488999999999999999999998765 789999999642 233358999999999999999999988764
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.17 E-value=0.18 Score=47.53 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=56.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC--ceeCCeeEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGKSHL 353 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~--~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng--~~~~G~~l~ 353 (360)
...+.|.|+-||..+..++++-+|+. |-+++++.+..+. -=||+|.+..+|+.|++.|.. ..|.||.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 44567888999999999999999986 6778887775553 259999999999999998874 567788764
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.48 E-value=1.6 Score=29.23 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018159 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 292 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
..++-.+|+..+.+|+.. .|+ .++. | -||.|.+..+|.+|+...+|+.+.+.+|.
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~I~--~d~t---G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-RIR--DDRT---G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CCccHHHHHHHHhcCCcc-eEE--ecCC---E-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 457789999999999843 333 3432 3 38999999999999999999998887765
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.37 E-value=0.6 Score=40.70 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=51.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE-EEeecC
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI-RCSLSE 184 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l-~v~~~~ 184 (360)
.=|-|-+.|+..+ .-|..+|.+||.|...... ..-.+-+|.|.+.-+|.+||. .+|..|+|..+ =|..+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 4566667776554 3677899999988766553 223479999999999999995 59998887654 355543
No 210
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=90.13 E-value=0.55 Score=48.37 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=10.7
Q ss_pred CCHHHHHHhhccCC
Q 018159 118 ASEEDLRDLCEPIG 131 (360)
Q Consensus 118 ~t~~~l~~~f~~~G 131 (360)
.|-++|..++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 46788888888764
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.08 E-value=1.6 Score=29.99 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=34.8
Q ss_pred CCCHHHHHHhhccCC-----cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 117 DASEEDLRDLCEPIG-----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 117 ~~t~~~l~~~f~~~G-----~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.++..+|..++...+ .|-.+.+..+ |+||+-... .|..++..|++..+.|++++|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467778888776653 5677777644 789987765 788888899999999999999764
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.88 E-value=0.2 Score=49.61 Aligned_cols=71 Identities=31% Similarity=0.422 Sum_probs=58.5
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC--CCCcEEEEeecCc
Q 018159 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRCSLSET 185 (360)
Q Consensus 109 i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~ 185 (360)
..+.|.+-..+-..|..+|.+||.|.+++.+++.. .|.|.|.+.+.|..|+.+++|.. ..|-+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44455555667778999999999999999988755 69999999999999999999976 4577788888764
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.43 E-value=0.23 Score=47.89 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=61.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++||+|+...+..+-++.+...+|-|.++.... |||..|.....+..|+..++...++|+.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4667899999999999999999999999988876643 899999999999999999998889888877654
No 214
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=89.35 E-value=0.81 Score=36.37 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=65.6
Q ss_pred CcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCCCCCccccccccceEEEcCCCCC-CCHHHHHHHHhhcC
Q 018159 229 NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHG 307 (360)
Q Consensus 229 ~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G 307 (360)
+.++..+.|.+..++.+++. ..+..+.+..+.+..-.|.............-=|.|.|||.. .+++-|+.+.+.+|
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred CCCeEEEEEEeccceeEEEe---cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 34688899999999986665 355666777676665554433332222223344788999955 68889999999999
Q ss_pred CeeEEEcCCCCCCCCCeEEE
Q 018159 308 EVTKVVMPPGKSGKRDFGFI 327 (360)
Q Consensus 308 ~v~~v~i~~~~~~~kg~afV 327 (360)
.+..+...........||-|
T Consensus 131 ~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 131 EPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred CeEEEEcCCCCcccccEEEE
Confidence 99999887665444445544
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.42 E-value=0.44 Score=47.28 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=54.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCcee--CCeeEeEEee
Q 018159 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI--DGKSHLHFPV 357 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~--~G~~l~v~p~ 357 (360)
..+.|.+-..+-.-|.-+|++||.|.++...++- ..|.|.|.+.+.|..|+.+|+|+.+ -|-+.+|.-.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 3344555566778899999999999998886665 5799999999999999999999765 4666655443
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.88 E-value=2.6 Score=40.30 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=60.0
Q ss_pred ccccceEEEcCCC-CCCCHHHHHHHHhhc----CCeeEEEcCCCCC-----------C----------------------
Q 018159 279 ASQVKALYVKNIP-DNTSTEKIKELFQRH----GEVTKVVMPPGKS-----------G---------------------- 320 (360)
Q Consensus 279 ~~~~~~l~V~nlp-~~~t~~~L~~~f~~~----G~v~~v~i~~~~~-----------~---------------------- 320 (360)
...+++|-|-|+. ..+...+|+-+|+.| |.|.+|.|.+..- |
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 3557899999999 668889999999876 5888998853210 0
Q ss_pred --------------C--CCeEEEEeCCHHHHHHHHHhhCCceeC--CeeEeEEe
Q 018159 321 --------------K--RDFGFIHYAERSSALKAVKDTEKYEID--GKSHLHFP 356 (360)
Q Consensus 321 --------------~--kg~afV~F~~~~~A~~A~~~lng~~~~--G~~l~v~p 356 (360)
+ --||.|+|.+...|.+.+..+.|..|. |..|.+|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 136899999999999999999999986 44554443
No 217
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=87.69 E-value=3.6 Score=41.92 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=25.0
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCCCCC
Q 018159 146 ESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 146 ~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
.-+||-||+-.-+.....||+.+-+....
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 45999999999999999999888776655
No 218
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.36 E-value=0.56 Score=33.33 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=45.1
Q ss_pred EEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCC---CCCCCccccccccceEEEcCCCCCCCHHHHHHHH
Q 018159 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP---KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303 (360)
Q Consensus 233 ~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f 303 (360)
|.|+|....-|.+.++.- .....+++..+.+..... ....-........++|.|+|||..++++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~-~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKK-KHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCC-EEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 568888888888776642 223445555554443322 2222233444567899999999999999998653
No 219
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=85.96 E-value=1.1 Score=31.93 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=41.3
Q ss_pred EEEEecCHHHHHHHHHHhc-CCCCCCcEEEE---------------eecCcccceeecCCCCCCCHHHHHHHHH
Q 018159 151 AFVSFRSKEFAKKAIDELH-SKELKGKTIRC---------------SLSETKNRLFIGNVPKNWTEDEFRKVIE 208 (360)
Q Consensus 151 a~v~f~~~~~a~~a~~~l~-~~~~~g~~l~v---------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 208 (360)
|.|.|....-|++.++.-. ...+.+..+.| ....+++++.++|||....+++|+..++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999996421 12344444433 3344578999999999999998876533
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.23 E-value=1.5 Score=37.76 Aligned_cols=37 Identities=22% Similarity=0.502 Sum_probs=28.7
Q ss_pred cccceEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEcCC
Q 018159 280 SQVKALYVKNIPDN------------TSTEKIKELFQRHGEVTKVVMPP 316 (360)
Q Consensus 280 ~~~~~l~V~nlp~~------------~t~~~L~~~f~~~G~v~~v~i~~ 316 (360)
....||++-+||.. -++.-|+..|..||.|..|.||.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34568888888843 24578999999999999998873
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.43 E-value=0.8 Score=41.47 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=46.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~ 166 (360)
-.+.|-|.+.|....-++|...|..|| .=..|.++.+. .||-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 457899999999988889999999987 44667777665 49999999999999995
No 222
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=81.30 E-value=1.8 Score=39.33 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=4.4
Q ss_pred CCHHHHHH
Q 018159 118 ASEEDLRD 125 (360)
Q Consensus 118 ~t~~~l~~ 125 (360)
.|.++++.
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 45666554
No 223
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=79.70 E-value=4.4 Score=35.46 Aligned_cols=61 Identities=11% Similarity=0.251 Sum_probs=50.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC--------CCC-CCeEEEEeCCHHHHHHHHH
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--------SGK-RDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~--------~~~-kg~afV~F~~~~~A~~A~~ 340 (360)
..++.|...|+...++-..+...|-+||+|.+|++..+. ..+ .....+.|-+.+.+..-..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHH
Confidence 557789999999999999999999999999999998765 111 4567999999988776543
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.98 E-value=5.8 Score=36.19 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=51.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCee-EEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...|-|.++|...-.++|...|..||.=. .|..+.+ ..||-.|.+...|..||.. .--.|+++||
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-----thalaVFss~~~AaeaLt~------kh~~lKiRpL 456 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-----THALAVFSSVNRAAEALTL------KHDWLKIRPL 456 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-----ceeEEeecchHHHHHHhhc------cCceEEeeeh
Confidence 46799999998888889999999997443 5666665 4799999999999999983 4445677776
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=78.48 E-value=5.2 Score=34.73 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=38.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcE-EEEEEeeCCCCCCcceEEEEEecCHH
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKE 159 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~a~v~f~~~~ 159 (360)
....-|+|+|||.++...+|+.-+...|.+ .++.+. ...|-||+.|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 345569999999999999999999888743 444442 23567999997763
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=78.19 E-value=1.1 Score=33.90 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=28.9
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHH
Q 018159 284 ALYVKNIPDN---------TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333 (360)
Q Consensus 284 ~l~V~nlp~~---------~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~ 333 (360)
++.|.|+|.. ++.+.|++.|+.|..++ |+...+..+.+|+++|.|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCCh
Confidence 6677777643 35589999999999875 5555666666899999998643
No 227
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=76.88 E-value=3 Score=41.11 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=21.7
Q ss_pred eEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018159 324 FGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 324 ~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
-.|+.--+.++-..|+..|-...+.|++.+
T Consensus 623 ~IFcsImsaeDyiDAFEklLkL~LK~~Q~r 652 (822)
T KOG2141|consen 623 AIFCSIMSAEDYIDAFEKLLKLSLKGKQER 652 (822)
T ss_pred hheeeeecchHHHHHHHHHHhccCCCcchH
Confidence 456777777788888887777777777654
No 228
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=75.84 E-value=4.6 Score=29.74 Aligned_cols=27 Identities=7% Similarity=0.287 Sum_probs=23.5
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHHH
Q 018159 309 VTKVVMPPGKSGKRDFGFIHYAERSSA 335 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~A 335 (360)
|..|+|.+.+.+..|.|...|.++..-
T Consensus 12 ip~VrLtRsrdg~~g~a~f~F~~p~al 38 (109)
T TIGR03047 12 IPDVRLTRSRDGGTGTALFRFENPKAL 38 (109)
T ss_pred CCceEEEEccCCCceEEEEEECCchhh
Confidence 678999999998899999999998653
No 229
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=75.33 E-value=0.92 Score=39.00 Aligned_cols=68 Identities=28% Similarity=0.450 Sum_probs=45.2
Q ss_pred CCEEEEcCCCCCC------------CHHHHHHhhccCCcEEEEEEeeCC-----CCCCcce-----E---------EEEE
Q 018159 106 GSEVFIGGLPKDA------------SEEDLRDLCEPIGDVFEVRLMKDK-----ESGESKG-----F---------AFVS 154 (360)
Q Consensus 106 ~~~i~v~nLp~~~------------t~~~l~~~f~~~G~i~~~~~~~~~-----~~~~~~g-----~---------a~v~ 154 (360)
..||++.+||-.| +++-|+..|..||.|..|.|+.-. -+|+..| | |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 3579999998532 567799999999999888765421 2344433 3 4466
Q ss_pred ecCHHHHHHHHHHhcCCCC
Q 018159 155 FRSKEFAKKAIDELHSKEL 173 (360)
Q Consensus 155 f~~~~~a~~a~~~l~~~~~ 173 (360)
|.....-..|+..|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6666666677777766543
No 230
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=74.42 E-value=3.4 Score=30.61 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=23.6
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHHH
Q 018159 309 VTKVVMPPGKSGKRDFGFIHYAERSSA 335 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~A 335 (360)
|..|+|.+.+.+..|.|...|.++..-
T Consensus 15 ip~VrLtRsrdg~~g~a~f~F~~p~al 41 (113)
T CHL00128 15 IPDVRLTRSRDGSTGTATFRFKNPNIL 41 (113)
T ss_pred CCceEEEEccCCCceEEEEEECCchhh
Confidence 678999999998899999999998653
No 231
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.07 E-value=63 Score=28.58 Aligned_cols=156 Identities=15% Similarity=0.251 Sum_probs=91.5
Q ss_pred ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC------CCCCCCcceEEEEecChHHHHH----HHHHHhcCCc
Q 018159 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP------QNPSRNRGFSFVLYYNNACADY----SRQKMLNANF 255 (360)
Q Consensus 186 ~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~------~~~~~~~g~~~v~f~~~~~a~~----a~~~~~~~~~ 255 (360)
.+.|.+.|+...++--.+...|-.||+ |.++.++.+. ...........+-|.++..+.. .++.++.-..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~p-IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGP-IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCc-eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 356788999988988889999999998 9999999874 1122233456778888877643 2233333233
Q ss_pred ccCCCCceeeecCCCCCC-----C---------------ccccccccceEEEcCCCCCCCHHHH-HH---HHhhcC----
Q 018159 256 KLDGNTPTISWADPKSTP-----D---------------HSAAASQVKALYVKNIPDNTSTEKI-KE---LFQRHG---- 307 (360)
Q Consensus 256 ~~~~~~~~v~~~~~~~~~-----~---------------~~~~~~~~~~l~V~nlp~~~t~~~L-~~---~f~~~G---- 307 (360)
.+....+.+.+..-.... . .-.....++.|.|.=- ..+..+++ .+ ++..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 455556655544321110 0 0011122455655433 33433333 22 222223
Q ss_pred CeeEEEcCCCCCCC----CCeEEEEeCCHHHHHHHHHhhC
Q 018159 308 EVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 308 ~v~~v~i~~~~~~~----kg~afV~F~~~~~A~~A~~~ln 343 (360)
.|.+|.|+...... +.||.++|-+...|...+..|.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 34566665433222 7899999999999999888766
No 232
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=72.70 E-value=7.7 Score=35.18 Aligned_cols=56 Identities=27% Similarity=0.340 Sum_probs=45.9
Q ss_pred EEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCcccceeecCCCCCCCHHHHHHHHH
Q 018159 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208 (360)
Q Consensus 151 a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 208 (360)
|||.|.+..+|..|++.+.... ++.+++..|.+.+.++=.||........++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998654433 4667999999999999999988888877776544
No 233
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=72.67 E-value=5.2 Score=29.47 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=31.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHH
Q 018159 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~ 337 (360)
.=|+.+|+..+ |..|+|.+.+.|..|.|...|.++..-..
T Consensus 10 IQF~~Gi~E~~--------------vp~VrLtRsrdG~tG~A~f~F~~p~~l~~ 49 (113)
T PRK13610 10 IQFVKGENEKD--------------QPEIRLFRNLDGKKGKAVYKFYKPKTITL 49 (113)
T ss_pred EEEecCCCCCc--------------CCceEEEEccCCCccEEEEEECCchhccc
Confidence 45777777654 77899999999999999999999866433
No 234
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=71.88 E-value=4 Score=40.23 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=7.7
Q ss_pred CCCCCCCHHHHHHH
Q 018159 289 NIPDNTSTEKIKEL 302 (360)
Q Consensus 289 nlp~~~t~~~L~~~ 302 (360)
.+|..+|.++|..+
T Consensus 551 ~~~l~vTledll~a 564 (822)
T KOG2141|consen 551 SLPLSVTLEDLLHA 564 (822)
T ss_pred hccccccHHHhhCh
Confidence 35555666666544
No 235
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=71.23 E-value=7.6 Score=38.79 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=10.1
Q ss_pred EEEcCCCCCCCHHHHHHhh
Q 018159 109 VFIGGLPKDASEEDLRDLC 127 (360)
Q Consensus 109 i~v~nLp~~~t~~~l~~~f 127 (360)
..++.+|-.++.++...+.
T Consensus 958 k~~~d~pvFAsaeey~hll 976 (988)
T KOG2038|consen 958 KGLNDSPVFASAEEYAHLL 976 (988)
T ss_pred hccccchhhhhHHHHHHHh
Confidence 4556666555555544443
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=70.89 E-value=0.63 Score=43.98 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=56.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.+++|++|+++.++-+.|..+++.+-.+..+.+.....-.+...++||.|+---...-|+-+||+..+....+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 5789999999999999999999998777776655443333456679999988877777777788776654433
No 237
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.99 E-value=23 Score=30.91 Aligned_cols=47 Identities=13% Similarity=0.309 Sum_probs=36.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCee-EEEcCCCCCCCCCeEEEEeCCH
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGKRDFGFIHYAER 332 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~kg~afV~F~~~ 332 (360)
...|+++|||.++--.+|+..+.+-|.+. ++..- |..|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCc
Confidence 35699999999999999999999988654 34332 2247799999764
No 238
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=67.44 E-value=6.4 Score=31.92 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=45.5
Q ss_pred ceEEEcCCCCCCCH-----HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCe-eEe
Q 018159 283 KALYVKNIPDNTST-----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK-SHL 353 (360)
Q Consensus 283 ~~l~V~nlp~~~t~-----~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~-~l~ 353 (360)
.++.+.+++..+.. .....+|.+|-...-..+.+.. ++..|-|.++..|..|...++++.|.|+ .+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf----rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF----RRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh----ceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 35666777644432 2344566665544444444443 5578899999999999999999999999 443
No 239
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=66.56 E-value=6 Score=29.23 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=23.8
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHHHH
Q 018159 309 VTKVVMPPGKSGKRDFGFIHYAERSSAL 336 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~A~ 336 (360)
|..|+|.+.+.+..|.|...|.++..-.
T Consensus 14 vp~VrLtRsrdg~~g~a~f~F~~p~~l~ 41 (111)
T PLN00039 14 VPDVRLTRSRDGTNGTAIFVFDQPSVFD 41 (111)
T ss_pred CCceEEEEccCCCccEEEEEECCchhhc
Confidence 6789999999988999999999986533
No 240
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=65.84 E-value=3.8 Score=37.22 Aligned_cols=6 Identities=0% Similarity=0.064 Sum_probs=2.2
Q ss_pred CCHHHH
Q 018159 198 WTEDEF 203 (360)
Q Consensus 198 ~~~~~l 203 (360)
++..+|
T Consensus 231 v~~~dI 236 (324)
T PF05285_consen 231 VDPSDI 236 (324)
T ss_pred CCHHHH
Confidence 333333
No 241
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=65.04 E-value=11 Score=35.34 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=7.7
Q ss_pred CCCCCCcEEEEee
Q 018159 170 SKELKGKTIRCSL 182 (360)
Q Consensus 170 ~~~~~g~~l~v~~ 182 (360)
.-.+.||+|.|-.
T Consensus 423 SGSMrGRpItvAa 435 (620)
T COG4547 423 SGSMRGRPITVAA 435 (620)
T ss_pred CCCcCCcceehhH
Confidence 3455677776643
No 242
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=63.69 E-value=9 Score=30.22 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=54.2
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCccc------------ceeecCCCCC-CCHHHHHHHHHhhCCce
Q 018159 148 KGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------RLFIGNVPKN-WTEDEFRKVIEDVGPGV 214 (360)
Q Consensus 148 ~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~------------~l~v~nlp~~-~~~~~l~~~f~~~g~~i 214 (360)
.++..+.|.+.+++.+++. .....+.|..+.+....+.. =+.+.+||.. ++.+-++.+.+.+|. +
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~-~ 132 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGE-P 132 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCC-e
Confidence 4579999999999999995 46667788888776655321 1567899988 888999999999998 6
Q ss_pred eEEEE
Q 018159 215 ETIEL 219 (360)
Q Consensus 215 ~~~~~ 219 (360)
..+..
T Consensus 133 i~vD~ 137 (153)
T PF14111_consen 133 IEVDE 137 (153)
T ss_pred EEEEc
Confidence 55554
No 243
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=62.35 E-value=8 Score=28.70 Aligned_cols=28 Identities=7% Similarity=0.230 Sum_probs=23.8
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHHHH
Q 018159 309 VTKVVMPPGKSGKRDFGFIHYAERSSAL 336 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~A~ 336 (360)
|..|+|.+.+.+..|.|...|.++..-.
T Consensus 17 ip~VrLtRsrdg~~g~a~f~F~~p~al~ 44 (113)
T PRK13612 17 VPDIRLTRSRDGRTGQATFYFEQPQALA 44 (113)
T ss_pred CCceEEEEccCCCeeEEEEEECCccccC
Confidence 6789999999888999999999986543
No 244
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=62.23 E-value=18 Score=23.74 Aligned_cols=18 Identities=11% Similarity=0.466 Sum_probs=14.6
Q ss_pred HHHHHhhccCCcEEEEEE
Q 018159 121 EDLRDLCEPIGDVFEVRL 138 (360)
Q Consensus 121 ~~l~~~f~~~G~i~~~~~ 138 (360)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999998865544
No 245
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=61.64 E-value=33 Score=24.24 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=40.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018159 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
-++-.++..++..+|++.+.. || .|.+|+....+.+. --|||++..-..|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~-KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-EEEEEEeCCCCcHHHHHHh
Confidence 344456778999999999988 56 66677655444332 2499999998888887654
No 246
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=61.58 E-value=9.3 Score=38.12 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=7.1
Q ss_pred cChHHHHHHHHHHh
Q 018159 238 YNNACADYSRQKML 251 (360)
Q Consensus 238 ~~~~~a~~a~~~~~ 251 (360)
-+..++..|+.++.
T Consensus 399 lSA~D~v~al~ALL 412 (622)
T PF02724_consen 399 LSASDVVYALTALL 412 (622)
T ss_pred eeHHHHHHHHHHHh
Confidence 34445555555554
No 247
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=60.83 E-value=6.6 Score=39.17 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=6.7
Q ss_pred ecChHHHHHHHHHHh
Q 018159 237 YYNNACADYSRQKML 251 (360)
Q Consensus 237 f~~~~~a~~a~~~~~ 251 (360)
|...-+|.-+.-.+.
T Consensus 395 y~~~lSA~D~v~al~ 409 (622)
T PF02724_consen 395 YRGKLSASDVVYALT 409 (622)
T ss_pred CCCceeHHHHHHHHH
Confidence 344444444444443
No 248
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=60.70 E-value=16 Score=34.76 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=12.0
Q ss_pred CHHHHHHHHHhhCCceeCCeeEe
Q 018159 331 ERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 331 ~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
+.+++.+|-..+....|.|++|.
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI~ 430 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKIV 430 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCccc
Confidence 44555555555545555555553
No 249
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=60.58 E-value=13 Score=30.13 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=38.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC--C-CCeEEEEeCCHHHHHHHHHh
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~--~-kg~afV~F~~~~~A~~A~~~ 341 (360)
++++.. |......+|.+.-+ |.+..|.+....++ . +|-.||+|.+..+|.+++..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455555 33344455555555 78888887665544 2 88899999999999987764
No 250
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=60.32 E-value=17 Score=24.50 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=45.2
Q ss_pred HHHHHhhccCC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCcc
Q 018159 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 121 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
++|.+-|...| .|..+.-+..+.++.....-||++........++ +=..+.|..+.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46777788888 7888877777766777778889887775544333 445678888888876644
No 251
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=59.84 E-value=7.5 Score=31.51 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=54.3
Q ss_pred CEEEEcCCCCCCC-----HHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCc-EEEE
Q 018159 107 SEVFIGGLPKDAS-----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TIRC 180 (360)
Q Consensus 107 ~~i~v~nLp~~~t-----~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~-~l~v 180 (360)
.++.+.+++..+- .....++|.+|....-..+++ +.++.-|.|.++..|..|.-.+++..+.|+ .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4577777776532 123456788777665555543 345678899999999999999999999998 8888
Q ss_pred eecCcc
Q 018159 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.++++.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 887754
No 252
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=59.10 E-value=13 Score=33.98 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=47.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCC----CCeEEEEeCCHHHHHHHHHhhCCcee
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEI 347 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~----kg~afV~F~~~~~A~~A~~~lng~~~ 347 (360)
..+.|.+||..++...|.+-..+|- .|....+.....+. .+.|||.|....+...-....+|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4789999999999999988777754 23333343222111 56789999999998888888888766
No 253
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=58.19 E-value=21 Score=23.43 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=16.5
Q ss_pred HHHHHHHhhcCCeeEEEcCC
Q 018159 297 EKIKELFQRHGEVTKVVMPP 316 (360)
Q Consensus 297 ~~L~~~f~~~G~v~~v~i~~ 316 (360)
.+||++|+..|.|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999998666643
No 254
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=58.08 E-value=45 Score=23.07 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=40.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018159 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
-++-.++..+|..+|+..++. || .|..|+...-+.+. --|||++..-..|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~-KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE-KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-eEEEEEECCCCcHHHHHHh
Confidence 455567888999999999988 55 56666554443322 2499999988888876554
No 255
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.62 E-value=12 Score=28.30 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=29.3
Q ss_pred EEEEcCCCCC---------CCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCH-HHHHHHH
Q 018159 108 EVFIGGLPKD---------ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK-EFAKKAI 165 (360)
Q Consensus 108 ~i~v~nLp~~---------~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~-~~a~~a~ 165 (360)
++.|-|+|.. .+...|++.|+.|.++. ++.+.++ ..+.|++.|.|..- ..-..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 3556666543 34568999999999875 5555554 35688999999765 3344454
No 256
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=56.96 E-value=2.2 Score=40.51 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=52.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
..++||++|++++.+-.+|..+|+.+-.+..+-+.....-+ .-++.|+|+---...-|+-+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 35789999999999999999999998777766554433222 346899999877778888888876554
No 257
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=56.70 E-value=14 Score=30.00 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=40.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCC-CCcceEEEEEecCHHHHHHHHHH
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDE 167 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~a~v~f~~~~~a~~a~~~ 167 (360)
.+++|.. |.+...++|..+-+ |.+..+.+.+.... ...+|..||.|.+.+.|.+++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4567776 44444445555545 78888887765442 25688999999999999998864
No 258
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=55.77 E-value=5.1 Score=38.05 Aligned_cols=7 Identities=43% Similarity=0.648 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 018159 113 GLPKDAS 119 (360)
Q Consensus 113 nLp~~~t 119 (360)
|-|...|
T Consensus 534 napkra~ 540 (615)
T KOG0526|consen 534 NAPKRAT 540 (615)
T ss_pred CCCccch
Confidence 4444433
No 259
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=54.72 E-value=18 Score=24.55 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=23.3
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018159 323 DFGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 323 g~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
.+++|.|.+..+|.+|-+.|...-+.++
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4789999999999999998887666433
No 260
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=54.37 E-value=48 Score=24.75 Aligned_cols=109 Identities=21% Similarity=0.293 Sum_probs=61.5
Q ss_pred cCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC--CCCcEEEEeecCcccce
Q 018159 112 GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRCSLSETKNRL 189 (360)
Q Consensus 112 ~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~~~l 189 (360)
.-||+-+. .|-++|..-|+|.++..+..-.. ..|+-.++|.. ++|. |++-.......+
T Consensus 9 qVlPPYTn--KLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV 68 (145)
T TIGR02542 9 QVLPPYTN--KLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTPASV 68 (145)
T ss_pred EecCCccc--hhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCcccE
Confidence 34666553 58899999999988866543211 11222344432 3444 555444433333
Q ss_pred eec---------CCCCCCCHHHHHHHHHhhC--CceeEEEEeeCCCCCCCCcceEEEEecChH
Q 018159 190 FIG---------NVPKNWTEDEFRKVIEDVG--PGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (360)
Q Consensus 190 ~v~---------nlp~~~~~~~l~~~f~~~g--~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~ 241 (360)
+|. --|+..|..+++++|..-- .+|..-.+.++ ..+..+...||..|....
T Consensus 69 ~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rd-GLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 69 RIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRD-GLPEGSYRICFRLFNATQ 130 (145)
T ss_pred EEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhc-CCCCCceEEEEEEeccch
Confidence 332 2477789999999998531 11444444555 233345557888886654
No 261
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=54.09 E-value=21 Score=23.98 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=44.1
Q ss_pred HHHHHhhccCC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCcc
Q 018159 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 121 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
.+|++-|..+| ++..++-+..+.++.+...-+|+......-.. -|+=..++|+++.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 36778888888 88888888887766667777887765533332 23446678888888876543
No 262
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=54.00 E-value=15 Score=33.59 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=47.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEE-EEEeeCCCC--CCcceEEEEEecCHHHHHHHHHHhcCCCC
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFE-VRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~--~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 173 (360)
...+.|++||+..+..+|..-..+|-.-.. ..+.....+ ..-.+.|||.|.++.........++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467999999999999999988877653222 222211111 11256799999999998888877777654
No 263
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=52.27 E-value=6.9 Score=35.83 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=51.5
Q ss_pred CCCEEEEcCCCCCCCHH--------HHHHhhcc--CCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH
Q 018159 105 NGSEVFIGGLPKDASEE--------DLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~--------~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~ 166 (360)
..+.+|+.+.+...+.. ++...|.+ .+.+..++..++.....++|..|++|+....|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34678888887765555 89999998 6788999998888778889999999999999998873
No 264
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=52.09 E-value=46 Score=23.50 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=41.6
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHH
Q 018159 109 VFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (360)
Q Consensus 109 i~v~nLp~~~t~~~l~~~f~~-~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~ 167 (360)
-|.--.+..++..+|+..+.. || .|..|+.+..+. |. --|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~--KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GE--KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cc--EEEEEEeCCCCcHHHHHHh
Confidence 444456788999999999877 77 788888776652 22 2499999998888876544
No 265
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=51.66 E-value=51 Score=20.61 Aligned_cols=43 Identities=9% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHH
Q 018159 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (360)
Q Consensus 296 ~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (360)
-..+.+.|.+.| .|.++...... +..+...+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 356777888876 67777765443 33577788889988888776
No 266
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.06 E-value=11 Score=35.12 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=8.4
Q ss_pred eEEEcCCCCCCCHHHH
Q 018159 284 ALYVKNIPDNTSTEKI 299 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L 299 (360)
..-+.-.|.-+...++
T Consensus 383 a~~~~ldpeifDD~DF 398 (483)
T KOG2773|consen 383 ASPESLDPEIFDDSDF 398 (483)
T ss_pred ccccccCccccCcHHH
Confidence 3344445666666655
No 267
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=49.14 E-value=58 Score=22.56 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=41.1
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHH
Q 018159 109 VFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (360)
Q Consensus 109 i~v~nLp~~~t~~~l~~~f~~-~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~ 167 (360)
-|+-..+..++..+|+..++. || .|..|+.+..+. +. --|||.+.....|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~--KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GE--KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHHh
Confidence 566667889999999998877 67 777777766542 22 2499999888877765543
No 268
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=47.82 E-value=37 Score=33.31 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=8.3
Q ss_pred CCEEEEcCCCCCCCHH
Q 018159 106 GSEVFIGGLPKDASEE 121 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~ 121 (360)
.-+||-+-....+..+
T Consensus 295 ~Y~vfTt~fDe~i~A~ 310 (600)
T TIGR01651 295 DYKVFTTAFDETVDAE 310 (600)
T ss_pred cceecchhhhhhccHh
Confidence 4556666555444333
No 269
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=45.70 E-value=20 Score=30.49 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=30.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcC
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~ 315 (360)
....+||+-|+|..+|++-|..+.+++|.+..+.+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 345699999999999999999999999977765543
No 270
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=44.00 E-value=90 Score=28.91 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=28.5
Q ss_pred cccceEEEcCCC-CCCCHHHHHHHHhhc----CCeeEEEcC
Q 018159 280 SQVKALYVKNIP-DNTSTEKIKELFQRH----GEVTKVVMP 315 (360)
Q Consensus 280 ~~~~~l~V~nlp-~~~t~~~L~~~f~~~----G~v~~v~i~ 315 (360)
.++++|-|-|+. ..+...+|+.+|+.| |+|..|.|.
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 456789999998 567789999999876 577777774
No 271
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.52 E-value=4.3 Score=37.51 Aligned_cols=71 Identities=7% Similarity=0.001 Sum_probs=50.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.+.|+..+|...+..++.-+|..||.|..+.+-+-.+++ +-.+||+-.+. +|..+++.+.-..+.|.++++
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~ 76 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRK 76 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhh
Confidence 356788899999999999999999999988776655554 45678776553 556666655544455554443
No 272
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=43.19 E-value=87 Score=20.00 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=41.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCH----HHHHHHHHh
Q 018159 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER----SSALKAVKD 341 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~----~~A~~A~~~ 341 (360)
|+.|.|+.-.--...|.+.+...-.|.++.+.... +.+-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~----~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET----KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT----TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC----CEEEEEEecCCCCHHHHHHHHHH
Confidence 56777887767778999999999889988887665 6789999854 455566554
No 273
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.60 E-value=4.9 Score=37.12 Aligned_cols=78 Identities=6% Similarity=-0.120 Sum_probs=56.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.+.|+..||..+++.++.-+|..||.|..+-+.+.-..|...-.+||.-.. ..+..|+..+.-..+.|..+++..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 346788899999999999999999999888776665555556667776543 445666666555666777777766643
No 274
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=42.42 E-value=64 Score=21.68 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=39.5
Q ss_pred HHHHHHHhhcC-CeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018159 297 EKIKELFQRHG-EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 297 ~~L~~~f~~~G-~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
++|.+.|...| .|..|+-+..+.++ -..-||+.....+... .++=..++|.+|.|.+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 46888889988 66777766655333 3345777776655333 344567889999988764
No 275
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=41.80 E-value=12 Score=27.55 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=18.7
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHH
Q 018159 309 VTKVVMPPGKSGKRDFGFIHYAERSS 334 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~ 334 (360)
+..|+|.+.+.+..|.|...|.++..
T Consensus 12 ~pdVrLtRsrdg~~g~a~f~F~~p~a 37 (108)
T PF03912_consen 12 VPDVRLTRSRDGGTGTATFYFENPKA 37 (108)
T ss_dssp --EEEEEE-TTS-SEEEEEEEES-GG
T ss_pred CCCeEEEEccCCCceEEEEEECCCcc
Confidence 34899999998889999999998864
No 276
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=41.65 E-value=27 Score=33.47 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=31.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 322 RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 322 kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..+++++|.+...+.+|+..++|..+.|..+++.+
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~ 97 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQL 97 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhh
Confidence 58999999999999999999999999888777644
No 277
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=40.76 E-value=1e+02 Score=20.08 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=32.8
Q ss_pred CHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce
Q 018159 295 STEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 295 t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
.-.+|..+|.+.| .|.++....... +++..+.+.+.+.|.++|+. +|+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 3478888898887 677777644332 36666677777788887774 4443
No 278
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=40.52 E-value=52 Score=31.30 Aligned_cols=7 Identities=0% Similarity=-0.035 Sum_probs=3.0
Q ss_pred CCCCCCH
Q 018159 290 IPDNTST 296 (360)
Q Consensus 290 lp~~~t~ 296 (360)
|.++|-.
T Consensus 405 LHPSWeA 411 (432)
T PF09073_consen 405 LHPSWEA 411 (432)
T ss_pred CCccHHH
Confidence 4444433
No 279
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=40.07 E-value=42 Score=31.66 Aligned_cols=11 Identities=0% Similarity=0.277 Sum_probs=5.8
Q ss_pred HHHHHHHHhhc
Q 018159 296 TEKIKELFQRH 306 (360)
Q Consensus 296 ~~~L~~~f~~~ 306 (360)
+..|+.+....
T Consensus 563 erHLRaVieeI 573 (620)
T COG4547 563 ERHLRAVIEEI 573 (620)
T ss_pred HHHHHHHHHHH
Confidence 45566555443
No 280
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=37.25 E-value=24 Score=36.67 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=5.5
Q ss_pred CEEEEcCCCC
Q 018159 107 SEVFIGGLPK 116 (360)
Q Consensus 107 ~~i~v~nLp~ 116 (360)
+.+||-.+|.
T Consensus 905 ~~~wvl~~Pi 914 (1096)
T TIGR00927 905 QAIYLFLLPI 914 (1096)
T ss_pred eeEeEEecch
Confidence 4466655554
No 281
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.02 E-value=24 Score=29.93 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=29.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEE
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV 136 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~ 136 (360)
......++|+-|+|..+|++.|..+.+++|.+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34567889999999999999999999999865444
No 282
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.99 E-value=1.2e+02 Score=19.86 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=31.1
Q ss_pred CHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeC--CHHHHHHHHHhhCCceeC
Q 018159 295 STEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYA--ERSSALKAVKDTEKYEID 348 (360)
Q Consensus 295 t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~--~~~~A~~A~~~lng~~~~ 348 (360)
.-..|.++|..+| .|.++..........+..+|.+. +.+.+.++|+. +|+.+.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~v~ 69 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR-AGYEVL 69 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH-CCCeee
Confidence 4467888898887 66667554432222333455554 55567777764 455543
No 283
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=35.78 E-value=99 Score=21.66 Aligned_cols=38 Identities=8% Similarity=0.237 Sum_probs=26.0
Q ss_pred CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018159 308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 308 ~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
.|.+|..+.+ .+||-||+=.+..++..|++.+.+....
T Consensus 33 ~I~Si~~~~~---lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 33 NIYSIFAPDS---LKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp ---EEEE-TT---STSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred ceEEEEEeCC---CceEEEEEeCCHHHHHHHHhcccceeec
Confidence 4666666654 3599999999999999999987665433
No 284
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.71 E-value=40 Score=31.04 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=10.5
Q ss_pred EEcCCCCCCCHHHHHHhhcc
Q 018159 110 FIGGLPKDASEEDLRDLCEP 129 (360)
Q Consensus 110 ~v~nLp~~~t~~~l~~~f~~ 129 (360)
|-..||.--+..+|+.-|-.
T Consensus 354 fAq~lp~i~~p~d~y~~F~~ 373 (514)
T KOG3130|consen 354 FAQELPTIRTPADIYRAFVD 373 (514)
T ss_pred ccccCCccCCcchhhhhhee
Confidence 44555555555665554443
No 285
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=35.40 E-value=21 Score=26.09 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.1
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHH
Q 018159 309 VTKVVMPPGKSGKRDFGFIHYAERSS 334 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~ 334 (360)
|..|+|.+.+.+..|.|...|.++..
T Consensus 14 ~p~VrLtRsrdg~~g~a~f~F~~~~~ 39 (104)
T PRK13611 14 PTQVRLLKSKTGKRGSAIFRFEDLKS 39 (104)
T ss_pred CCceEEEEccCCCccEEEEEEcCCcc
Confidence 56789989998889999999999765
No 286
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=35.17 E-value=73 Score=22.33 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=23.5
Q ss_pred cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcC
Q 018159 132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 132 ~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
.|.++..+ +..+||-||+=.++.++..|+..+.+
T Consensus 33 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAP-----DSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE------TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEe-----CCCceEEEEEeCCHHHHHHHHhcccc
Confidence 45555444 34699999999999999999976554
No 287
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.07 E-value=1.4e+02 Score=20.08 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.0
Q ss_pred EEEEEecCHHHHHHHHHHhcCCC
Q 018159 150 FAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 150 ~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
+.+|.|.+...|.+|-+.|...-
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~g 25 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNG 25 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCC
Confidence 68999999999999988776443
No 288
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.09 E-value=1.3e+02 Score=19.17 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc
Q 018159 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 296 ~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
-.+|..+|.++| .|.++..............+...+.+.+.++++. +|+
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~-~G~ 62 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE-RGV 62 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH-CCc
Confidence 357778888886 5666654333211223445666777777777774 444
No 289
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=33.77 E-value=1.3e+02 Score=23.01 Aligned_cols=35 Identities=14% Similarity=-0.010 Sum_probs=25.1
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018159 323 DFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 323 g~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
|+--+.=.....+.+||..+. .++|++|.+.|+=|
T Consensus 68 GIvrc~R~~~~~v~aAL~l~~--~~~g~rv~I~~lgv 102 (124)
T COG1369 68 GIVRCRREYVDLVRAALMLAR--EVNGKRVIIVVLGV 102 (124)
T ss_pred eEEEEechhHHHHHHHHHHHH--HhCCceEEEEEeec
Confidence 443344456777888887655 89999999999855
No 290
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=33.26 E-value=58 Score=32.03 Aligned_cols=11 Identities=0% Similarity=0.277 Sum_probs=6.1
Q ss_pred HHHHHHHHhhc
Q 018159 296 TEKIKELFQRH 306 (360)
Q Consensus 296 ~~~L~~~f~~~ 306 (360)
+.+|+.+...+
T Consensus 542 ~~hLr~vi~~~ 552 (600)
T TIGR01651 542 ERHLRAVIEEI 552 (600)
T ss_pred HHHHHHHHHHH
Confidence 35566665544
No 291
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.47 E-value=1.5e+02 Score=27.46 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=28.8
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHhhccC----CcEEEEEEeeC
Q 018159 104 PNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKD 141 (360)
Q Consensus 104 ~~~~~i~v~nLp~~-~t~~~l~~~f~~~----G~i~~~~~~~~ 141 (360)
....+|-|-||.|+ +...+|...|+.| |+|..|.|+..
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 34667999999997 6777888777654 47888887654
No 292
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=31.27 E-value=56 Score=34.93 Aligned_cols=10 Identities=20% Similarity=-0.137 Sum_probs=4.4
Q ss_pred cceEEEcCCC
Q 018159 282 VKALYVKNIP 291 (360)
Q Consensus 282 ~~~l~V~nlp 291 (360)
+.+|.|+.++
T Consensus 1614 SArLvvG~~~ 1623 (1640)
T KOG0262|consen 1614 SARLVVGLPV 1623 (1640)
T ss_pred cceeEecccc
Confidence 3344444443
No 293
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=31.12 E-value=34 Score=33.72 Aligned_cols=10 Identities=30% Similarity=0.312 Sum_probs=4.1
Q ss_pred ccCccccCcc
Q 018159 15 EDNYMEEMDD 24 (360)
Q Consensus 15 ~~~~~e~~~~ 24 (360)
.+.++|+++.
T Consensus 523 SDeEWEEEep 532 (811)
T KOG4364|consen 523 SDEEWEEEEP 532 (811)
T ss_pred CcccccccCC
Confidence 3444444333
No 294
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.84 E-value=44 Score=31.39 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=4.2
Q ss_pred CCeeEeEE
Q 018159 348 DGKSHLHF 355 (360)
Q Consensus 348 ~G~~l~v~ 355 (360)
.||+|+.-
T Consensus 445 KgRKLrY~ 452 (483)
T KOG2773|consen 445 KGRKLRYH 452 (483)
T ss_pred cCceeeee
Confidence 45555543
No 295
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.96 E-value=44 Score=28.91 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=5.9
Q ss_pred CCCCCHHHHHH
Q 018159 195 PKNWTEDEFRK 205 (360)
Q Consensus 195 p~~~~~~~l~~ 205 (360)
...+|+++|..
T Consensus 182 ~~~lTQeElL~ 192 (240)
T PF05764_consen 182 ERPLTQEELLE 192 (240)
T ss_pred CCCCCHHHHHH
Confidence 44456665554
No 296
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=29.19 E-value=1.9e+02 Score=19.85 Aligned_cols=62 Identities=6% Similarity=0.099 Sum_probs=41.2
Q ss_pred EEEcCCCCCCCHHHHHHHHh-------hcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCcee
Q 018159 285 LYVKNIPDNTSTEKIKELFQ-------RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~-------~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~ 347 (360)
|..++||..+|.++|..... .+..|..++-.......+.||+..=.+.+...++.+. .|...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 56688998899999877654 3445666654444334456777777788877777764 46544
No 297
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=26.74 E-value=1.2e+02 Score=20.14 Aligned_cols=32 Identities=13% Similarity=0.422 Sum_probs=23.6
Q ss_pred HHHHHHHhh--cCCeeEEEcCCCCCCCCCeE-EEEeCCH
Q 018159 297 EKIKELFQR--HGEVTKVVMPPGKSGKRDFG-FIHYAER 332 (360)
Q Consensus 297 ~~L~~~f~~--~G~v~~v~i~~~~~~~kg~a-fV~F~~~ 332 (360)
.+|...+.+ .|.|...++..++ |+| +|+|.+.
T Consensus 18 ~~l~~~l~~~~~g~I~~fKmtDG~----giG~vv~~~ng 52 (64)
T PF11061_consen 18 KELVDKLGKNPIGTIKGFKMTDGS----GIGVVVEFSNG 52 (64)
T ss_pred HHHHHHhccCCcEEEEEEEEecCC----cEEEEEEecCC
Confidence 355566666 8999999998887 777 5577653
No 298
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=26.10 E-value=42 Score=34.99 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=3.0
Q ss_pred EEEEEec
Q 018159 150 FAFVSFR 156 (360)
Q Consensus 150 ~a~v~f~ 156 (360)
+-.+.|-
T Consensus 933 ~y~ltFi 939 (1096)
T TIGR00927 933 FFVITFL 939 (1096)
T ss_pred eeeehHH
Confidence 3344443
No 299
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=1.8e+02 Score=21.37 Aligned_cols=43 Identities=12% Similarity=0.290 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHH
Q 018159 297 EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 297 ~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (360)
-+|..+++.+| |.+..|..+.....-||++++.+.+..-+++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 47788889988 66555554544445799999996665555544
No 300
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=25.09 E-value=2.6e+02 Score=19.91 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=33.5
Q ss_pred HHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC
Q 018159 297 EKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 297 ~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln 343 (360)
+.+++++..+| ++.++.+..+... ....+++.+.+.|.++.-.+.
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~yD--~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGEYD--FVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCCCC--EEEEEEcCCHHHHHHHHHHHH
Confidence 56777787775 8888888877643 567889999998887776544
No 301
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.88 E-value=3e+02 Score=25.63 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=38.8
Q ss_pred cceEEEcCCCCCCC--HHHHHHHHh-----hcC--------CeeEEEc-CCCCC--CCCCe-EEEEe---CCHHHHHHHH
Q 018159 282 VKALYVKNIPDNTS--TEKIKELFQ-----RHG--------EVTKVVM-PPGKS--GKRDF-GFIHY---AERSSALKAV 339 (360)
Q Consensus 282 ~~~l~V~nlp~~~t--~~~L~~~f~-----~~G--------~v~~v~i-~~~~~--~~kg~-afV~F---~~~~~A~~A~ 339 (360)
.+.|.|.+||.... ...+..+|. .|. .|.+++- +...+ +.+.- -+|.| .+.+...+|.
T Consensus 190 RnNiRIiGiPEg~e~~~k~~~~~l~~ii~e~~p~L~~e~~i~IerahR~~~~~~~~~~~PR~iIvKfl~f~~KE~IL~aA 269 (370)
T PF02994_consen 190 RNNIRIIGIPEGEEEEGKGPENFLEEIIPENFPNLPKETDIEIERAHRSPRPKPPKGQRPRPIIVKFLRFQDKEKILKAA 269 (370)
T ss_dssp TTEEEEES----TT--HHHHHHHHHHHHHHH-CHHHHHT---EEEEEEESSSS-TTSSS--EEEEEESSHHHHHHHHHHH
T ss_pred CCceeEEecCCCccccccCHHHHHHHHHHHhCcCcccccchhhhhhhcccCCCCCccCCcCeEEEEecCcccHHHHHHHH
Confidence 45799999998754 233433332 232 4556643 22222 21222 34444 5566667777
Q ss_pred HhhCCceeCCeeEeEEe
Q 018159 340 KDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 340 ~~lng~~~~G~~l~v~p 356 (360)
.......|.|++|.+.|
T Consensus 270 R~~~~~~~~g~~I~if~ 286 (370)
T PF02994_consen 270 REKGQLTYKGKRIRIFP 286 (370)
T ss_dssp HHHS-EEETTEEEEEEC
T ss_pred HhcCceeeCCCceEEeC
Confidence 76777899999999987
No 302
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=24.39 E-value=1.5e+02 Score=22.44 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=24.2
Q ss_pred CeEEEEeC--CHHHHHHHHHhhCCceeCCeeEeEEeeec
Q 018159 323 DFGFIHYA--ERSSALKAVKDTEKYEIDGKSHLHFPVFV 359 (360)
Q Consensus 323 g~afV~F~--~~~~A~~A~~~lng~~~~G~~l~v~p~~v 359 (360)
+.|.|.-. ..+.+..||..++ .++|+++.++++.|
T Consensus 66 ~~gIlRc~R~~~~~v~aAL~li~--~i~~~~v~ir~l~v 102 (120)
T PRK03717 66 QTGIVRCDRKHVEELRFALTLVT--EINGSKAIIRTLGV 102 (120)
T ss_pred CEEEEEcCchhHHHHHHHHHHHH--hCCCeeEEEEEeec
Confidence 56777664 3455666666655 46789999998876
No 303
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=24.20 E-value=2.6e+02 Score=22.10 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=37.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHH
Q 018159 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (360)
-++-.+....+-.+|++.+.. || .|..|......++. --|||++..-.+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~-KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL-KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc-eEEEEEECCCCcHHHHHH
Confidence 445556778999999999988 55 55666655444332 249999987777665444
No 304
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=24.18 E-value=29 Score=31.39 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc
Q 018159 296 TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 296 ~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
...|++.+.+.|.|..-.+.+.-+ -|.|||-.-..+++.++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFN--mGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFN--MGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhc--CccceEEEEcHHHHHHHHHHHHhc
Confidence 468889999999887544433322 278899999999999999998864
No 305
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=24.10 E-value=37 Score=31.34 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=42.7
Q ss_pred ceEEEcCCCCCCCH--------HHHHHHHhh--cCCeeEEEcCCCC-CCC-CCeEEEEeCCHHHHHHHHH
Q 018159 283 KALYVKNIPDNTST--------EKIKELFQR--HGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 283 ~~l~V~nlp~~~t~--------~~L~~~f~~--~G~v~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~ 340 (360)
+.+|+.+.+...+. +++...|.. +|.+..|+..++. ... +|..|++|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 46677776644433 489999999 5667777776665 222 7889999999999999874
No 306
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.93 E-value=1.8e+02 Score=28.28 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=43.8
Q ss_pred EEcCCCCCC---CHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeE
Q 018159 286 YVKNIPDNT---STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSH 352 (360)
Q Consensus 286 ~V~nlp~~~---t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l 352 (360)
+|+||+.-. .-.-+..+-++||.|-.+++-.. -.|.-.+.+.|..|+.. ++..|.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~-------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV-------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc-------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 566766322 23566667778999998888443 27777899999999995 8888988875
No 307
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=23.92 E-value=1.4e+02 Score=29.47 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=9.4
Q ss_pred CEEEEcCCCCCCCHH
Q 018159 107 SEVFIGGLPKDASEE 121 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~ 121 (360)
.+=.|+|||..+-++
T Consensus 119 ~rntvgnipl~wYdd 133 (733)
T KOG0650|consen 119 TRNTVGNIPLKWYDD 133 (733)
T ss_pred hhcccCCcccccccc
Confidence 345688888765433
No 308
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=23.44 E-value=1e+02 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=16.8
Q ss_pred eEEEEEecCHHHHHHHHHHh
Q 018159 149 GFAFVSFRSKEFAKKAIDEL 168 (360)
Q Consensus 149 g~a~v~f~~~~~a~~a~~~l 168 (360)
-|+|++|.+.+.+.++.+.+
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 47999999999999888653
No 309
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=23.32 E-value=1.8e+02 Score=20.53 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=20.2
Q ss_pred cEEEEEEeeCCCCCCcceEEEEEecC
Q 018159 132 DVFEVRLMKDKESGESKGFAFVSFRS 157 (360)
Q Consensus 132 ~i~~~~~~~~~~~~~~~g~a~v~f~~ 157 (360)
.|..+++..-...|+.+|||-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36778887766669999999998765
No 310
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=22.81 E-value=2.1e+02 Score=18.10 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCH
Q 018159 293 NTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAER 332 (360)
Q Consensus 293 ~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~ 332 (360)
.-.-.+|.++|+++| .|.++..........+...+.+.+.
T Consensus 10 ~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~ 50 (71)
T cd04879 10 PGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP 50 (71)
T ss_pred CCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC
Confidence 344578889999987 6667766443212223344455443
No 311
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=22.81 E-value=3.9e+02 Score=22.38 Aligned_cols=54 Identities=26% Similarity=0.266 Sum_probs=35.2
Q ss_pred CCHHHHHHHHhhcCC---eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018159 294 TSTEKIKELFQRHGE---VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 294 ~t~~~L~~~f~~~G~---v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
.+.++++.....+|. |....+..+..|+.| |...-.++++|..+.+.|=|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~G-gVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAG-GVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTT-CEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCC-ceeecCCHHHHHHHHHHHhCCceE
Confidence 456788888888774 445555554443321 222236899999999998888776
No 312
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=22.78 E-value=55 Score=21.54 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=9.7
Q ss_pred HHHHHHHhhcCCeeEE
Q 018159 297 EKIKELFQRHGEVTKV 312 (360)
Q Consensus 297 ~~L~~~f~~~G~v~~v 312 (360)
=|+.+++.+||.+..+
T Consensus 5 yDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 5 YDVQQLLKKFGIIIYV 20 (62)
T ss_dssp HHHHHHHHTTS-----
T ss_pred HHHHHHHHHCCEEEEe
Confidence 4789999999977654
No 313
>PRK11901 hypothetical protein; Reviewed
Probab=21.71 E-value=2.5e+02 Score=25.39 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=44.3
Q ss_pred hhcCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcc-eEEEEEecCHHHHHHHHHHhc
Q 018159 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK-GFAFVSFRSKEFAKKAIDELH 169 (360)
Q Consensus 99 ~~~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~-g~a~v~f~~~~~a~~a~~~l~ 169 (360)
....+....+|-|-.++ .++.|..|.+.++ +..++++.....|+.- -.-|=.|.+.+.|..|+..|-
T Consensus 238 L~s~p~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 238 LSSAPASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred hhcCCCCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCC
Confidence 34556667778777754 4778888888876 3445555544434432 223447999999999998764
No 314
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=21.27 E-value=2.7e+02 Score=18.83 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcC-CeeEEEcCCCCCCCCCe-EEEEeCC---HHHHHHHHHhhCC
Q 018159 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRDF-GFIHYAE---RSSALKAVKDTEK 344 (360)
Q Consensus 296 ~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~-afV~F~~---~~~A~~A~~~lng 344 (360)
-..+.+.|.++| .|.++...+.......| -||.+.. ......++..|..
T Consensus 15 L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 15 LYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 577888999987 66677554443322223 3566663 5566677776665
No 315
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=20.98 E-value=2.8e+02 Score=18.77 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC
Q 018159 297 EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 297 ~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln 343 (360)
..|.+.+..+| +..+.+.-.-. .++.|+-+.+...|.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~--G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGG--GPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSS--SSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCC--CCeEEEEECCHHHHHHHHHHHH
Confidence 57778888899 55555532211 2788888889999888887763
No 316
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.14 E-value=3.4e+02 Score=21.48 Aligned_cols=34 Identities=9% Similarity=0.343 Sum_probs=27.5
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc
Q 018159 309 VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
|.+|.+|..- .||.||+......+..+++.+.|.
T Consensus 36 i~~i~vp~~f---pGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPEL---KGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCC---CcEEEEEEEChHHHHHHHhcCCCE
Confidence 6677777764 599999999888999999887763
No 317
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=20.10 E-value=69 Score=28.51 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=3.6
Q ss_pred CEEEEcC
Q 018159 107 SEVFIGG 113 (360)
Q Consensus 107 ~~i~v~n 113 (360)
..+|..+
T Consensus 85 ~~~F~~~ 91 (285)
T PF03896_consen 85 TILFPKP 91 (285)
T ss_pred EEEeccc
Confidence 4455555
Done!