Query 018159
Match_columns 360
No_of_seqs 264 out of 2392
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 10:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 6.7E-46 2.3E-50 331.9 26.6 248 100-357 35-288 (292)
2 3smz_A Protein raver-1, ribonu 100.0 4.6E-46 1.6E-50 331.6 25.4 241 103-357 19-261 (284)
3 4f02_A Polyadenylate-binding p 100.0 1.6E-34 5.6E-39 245.8 18.7 165 105-357 14-178 (213)
4 1b7f_A Protein (SXL-lethal pro 100.0 3.7E-33 1.3E-37 228.5 18.4 162 105-356 2-167 (168)
5 3md3_A Nuclear and cytoplasmic 100.0 1E-32 3.4E-37 225.4 18.8 162 107-357 1-164 (166)
6 1l3k_A Heterogeneous nuclear r 100.0 3.2E-32 1.1E-36 228.7 19.4 170 102-357 9-180 (196)
7 3nmr_A Cugbp ELAV-like family 100.0 4.4E-32 1.5E-36 223.6 19.4 164 105-357 2-174 (175)
8 3tyt_A Heterogeneous nuclear r 100.0 6.9E-31 2.4E-35 221.1 20.9 195 105-357 3-204 (205)
9 1fxl_A Paraneoplastic encephal 100.0 1.3E-30 4.4E-35 213.0 21.5 158 106-267 2-167 (167)
10 2qfj_A FBP-interacting repress 100.0 2.2E-30 7.7E-35 220.8 21.0 167 105-275 27-210 (216)
11 3pgw_A U1-A; protein-RNA compl 100.0 8E-30 2.7E-34 226.4 23.9 243 103-357 6-280 (282)
12 2g4b_A Splicing factor U2AF 65 100.0 8.2E-31 2.8E-35 215.4 16.1 156 105-357 3-171 (172)
13 1fje_B Nucleolin RBD12, protei 100.0 2.1E-31 7.2E-36 219.6 12.0 163 102-357 9-171 (175)
14 2cjk_A Nuclear polyadenylated 100.0 1.5E-30 5.2E-35 212.7 15.1 159 105-270 2-166 (167)
15 2yh0_A Splicing factor U2AF 65 100.0 5.2E-30 1.8E-34 215.6 17.5 176 105-357 3-191 (198)
16 2adc_A Polypyrimidine tract-bi 100.0 3.4E-29 1.2E-33 215.3 20.0 192 103-357 31-225 (229)
17 1fxl_A Paraneoplastic encephal 100.0 2.1E-29 7.2E-34 205.8 17.8 161 185-355 1-165 (167)
18 2cjk_A Nuclear polyadenylated 100.0 1.9E-29 6.5E-34 206.2 15.4 160 185-357 2-163 (167)
19 1qm9_A Polypyrimidine tract-bi 100.0 3.3E-29 1.1E-33 210.7 16.9 190 105-357 2-194 (198)
20 2qfj_A FBP-interacting repress 100.0 6.1E-29 2.1E-33 211.9 17.6 168 186-357 28-202 (216)
21 3sde_A Paraspeckle component 1 100.0 5.5E-28 1.9E-32 211.8 18.0 159 104-271 20-180 (261)
22 3smz_A Protein raver-1, ribonu 100.0 7.9E-28 2.7E-32 213.8 19.0 165 103-272 92-266 (284)
23 2ghp_A U4/U6 snRNA-associated 99.9 2.1E-27 7.1E-32 211.9 14.5 162 104-270 115-291 (292)
24 3sde_A Paraspeckle component 1 99.9 4.8E-26 1.6E-30 199.5 16.5 150 186-357 22-176 (261)
25 2kn4_A Immunoglobulin G-bindin 99.9 9.8E-22 3.4E-26 158.7 16.6 138 217-357 3-147 (158)
26 4f25_A Polyadenylate-binding p 99.9 1.2E-22 4.3E-27 154.6 10.1 97 104-202 3-113 (115)
27 4fxv_A ELAV-like protein 1; RN 99.9 5E-22 1.7E-26 146.7 11.0 83 104-186 17-99 (99)
28 3s8s_A Histone-lysine N-methyl 99.8 2.9E-20 9.9E-25 139.9 11.5 84 103-186 3-86 (110)
29 2i2y_A Fusion protein consists 99.8 4E-20 1.4E-24 147.8 12.4 125 227-357 10-145 (150)
30 2lxi_A RNA-binding protein 10; 99.8 4.5E-21 1.5E-25 139.4 5.2 82 106-187 1-84 (91)
31 2lkz_A RNA-binding protein 5; 99.8 1.2E-20 4E-25 137.7 7.2 81 105-185 8-94 (95)
32 3lqv_A PRE-mRNA branch site pr 99.8 4.3E-20 1.5E-24 140.7 9.5 105 103-212 5-109 (115)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.9E-24 130.5 9.7 82 103-184 4-85 (85)
34 3md1_A Nuclear and cytoplasmic 99.8 2.1E-19 7E-24 128.5 10.9 81 106-186 1-81 (83)
35 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-19 4E-24 134.0 9.7 77 281-357 18-96 (99)
36 2dnz_A Probable RNA-binding pr 99.8 2.8E-19 9.6E-24 131.3 11.6 85 103-187 2-86 (95)
37 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.7E-19 5.9E-24 130.1 10.2 83 104-186 4-86 (87)
38 2jrs_A RNA-binding protein 39; 99.8 2.3E-19 8E-24 134.7 11.0 84 103-186 23-106 (108)
39 3p5t_L Cleavage and polyadenyl 99.8 5.5E-20 1.9E-24 133.5 7.2 80 107-186 2-83 (90)
40 1whw_A Hypothetical protein ri 99.8 3.4E-19 1.1E-23 131.9 10.7 86 103-188 5-90 (99)
41 2x1f_A MRNA 3'-END-processing 99.8 3.1E-19 1E-23 131.3 10.4 84 106-189 2-85 (96)
42 2cq0_A Eukaryotic translation 99.8 3.9E-19 1.3E-23 132.6 11.0 85 103-187 12-96 (103)
43 2la6_A RNA-binding protein FUS 99.8 4.3E-19 1.5E-23 131.3 11.2 85 100-184 7-99 (99)
44 2kn4_A Immunoglobulin G-bindin 99.8 8.2E-19 2.8E-23 141.5 13.8 133 135-273 2-153 (158)
45 2dgs_A DAZ-associated protein 99.8 5.6E-19 1.9E-23 130.7 11.6 85 102-187 6-90 (99)
46 2cqc_A Arginine/serine-rich sp 99.8 3.1E-19 1.1E-23 131.1 10.2 83 103-185 12-94 (95)
47 2e5h_A Zinc finger CCHC-type a 99.8 3.3E-19 1.1E-23 130.7 10.1 83 102-184 12-94 (94)
48 2do4_A Squamous cell carcinoma 99.8 7.2E-19 2.4E-23 130.4 11.8 84 103-187 14-97 (100)
49 3ns6_A Eukaryotic translation 99.8 8.3E-20 2.8E-24 135.3 6.4 82 105-186 5-93 (100)
50 1p27_B RNA-binding protein 8A; 99.8 5E-19 1.7E-23 132.7 10.7 83 104-186 21-103 (106)
51 1x5u_A Splicing factor 3B subu 99.8 5.1E-19 1.8E-23 132.4 10.5 86 102-187 11-96 (105)
52 2dnm_A SRP46 splicing factor; 99.8 3.4E-19 1.2E-23 132.9 9.3 85 102-186 9-93 (103)
53 1x5t_A Splicing factor 3B subu 99.8 3.2E-19 1.1E-23 131.3 8.4 84 104-187 3-87 (96)
54 2dgo_A Cytotoxic granule-assoc 99.8 9.1E-19 3.1E-23 133.3 11.2 85 103-187 12-96 (115)
55 1x5s_A Cold-inducible RNA-bind 99.8 4.5E-19 1.5E-23 132.0 9.2 86 102-187 8-93 (102)
56 1x4h_A RNA-binding protein 28; 99.8 7.8E-19 2.7E-23 132.8 10.6 86 102-187 11-102 (111)
57 4f25_A Polyadenylate-binding p 99.8 3E-19 1E-23 135.8 8.2 76 282-357 5-80 (115)
58 1x4e_A RNA binding motif, sing 99.8 2.8E-19 9.6E-24 128.4 7.7 82 103-184 2-83 (85)
59 2cpf_A RNA binding motif prote 99.8 5.4E-19 1.8E-23 130.6 9.3 84 104-187 3-89 (98)
60 3s7r_A Heterogeneous nuclear r 99.8 1E-18 3.4E-23 126.1 10.3 81 102-183 7-87 (87)
61 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.2E-19 1.4E-23 132.1 8.4 85 103-187 9-93 (102)
62 1s79_A Lupus LA protein; RRM, 99.8 4.7E-19 1.6E-23 131.5 8.6 80 104-185 9-88 (103)
63 2cpz_A CUG triplet repeat RNA- 99.8 7.5E-19 2.6E-23 133.8 9.9 84 104-187 23-106 (115)
64 2lxi_A RNA-binding protein 10; 99.8 4.1E-19 1.4E-23 129.0 7.9 75 282-356 1-79 (91)
65 2kxn_B Transformer-2 protein h 99.8 8.8E-19 3E-23 135.8 10.2 86 101-186 41-126 (129)
66 2cph_A RNA binding motif prote 99.8 1.2E-18 4.2E-23 130.8 10.5 86 103-188 12-99 (107)
67 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.9E-19 3.4E-23 141.9 10.6 85 102-186 68-152 (165)
68 3ucg_A Polyadenylate-binding p 99.8 1E-18 3.5E-23 126.6 9.5 80 106-186 6-85 (89)
69 2d9p_A Polyadenylate-binding p 99.8 2.2E-18 7.6E-23 128.4 11.5 82 104-187 13-94 (103)
70 1oo0_B CG8781-PA, drosophila Y 99.8 8.9E-19 3.1E-23 132.3 9.4 83 104-186 24-106 (110)
71 2dnh_A Bruno-like 5, RNA bindi 99.8 2.5E-18 8.7E-23 128.6 11.8 82 104-186 13-97 (105)
72 2div_A TRNA selenocysteine ass 99.8 8.6E-19 2.9E-23 129.7 8.9 84 103-186 6-94 (99)
73 2ywk_A Putative RNA-binding pr 99.8 1.3E-18 4.5E-23 127.7 9.8 82 103-185 13-94 (95)
74 2dng_A Eukaryotic translation 99.8 2.1E-18 7.2E-23 128.6 10.6 82 104-187 13-94 (103)
75 4a8x_A RNA-binding protein wit 99.8 1.1E-18 3.7E-23 126.2 8.6 82 105-186 3-85 (88)
76 3s8s_A Histone-lysine N-methyl 99.8 1.6E-18 5.3E-23 130.4 9.7 78 280-357 4-83 (110)
77 3n9u_C Cleavage and polyadenyl 99.8 1.3E-18 4.5E-23 139.2 9.8 82 105-186 54-137 (156)
78 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.4E-18 1.5E-22 126.8 12.0 78 280-357 13-90 (103)
79 2fy1_A RNA-binding motif prote 99.8 1.9E-18 6.6E-23 131.4 10.2 83 103-186 4-86 (116)
80 2dgv_A HnRNP M, heterogeneous 99.8 2.7E-18 9.1E-23 125.2 10.5 83 103-187 5-87 (92)
81 3ulh_A THO complex subunit 4; 99.8 2.6E-18 8.9E-23 129.0 10.7 83 101-184 24-106 (107)
82 2dhg_A TRNA selenocysteine ass 99.8 1.7E-18 6E-23 129.3 9.7 85 102-187 5-91 (104)
83 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-18 4.3E-23 130.5 8.9 85 103-187 10-97 (106)
84 2mss_A Protein (musashi1); RNA 99.8 6.1E-19 2.1E-23 123.4 6.7 75 108-183 1-75 (75)
85 3r27_A HnRNP L, heterogeneous 99.8 3.1E-18 1.1E-22 124.7 10.3 78 103-186 18-97 (100)
86 2khc_A Testis-specific RNP-typ 99.8 1.3E-18 4.3E-23 133.2 8.7 82 103-184 37-118 (118)
87 1s79_A Lupus LA protein; RRM, 99.8 1.7E-18 5.9E-23 128.4 9.0 76 280-356 9-85 (103)
88 1p1t_A Cleavage stimulation fa 99.8 1.5E-18 5.2E-23 129.6 8.8 83 105-187 7-89 (104)
89 2cpe_A RNA-binding protein EWS 99.8 1.8E-18 6.2E-23 131.2 9.3 84 104-187 13-104 (113)
90 2cq3_A RNA-binding protein 9; 99.8 6.2E-18 2.1E-22 126.0 12.0 79 279-357 12-90 (103)
91 2dgx_A KIAA0430 protein; RRM d 99.8 4.4E-18 1.5E-22 125.0 11.0 77 280-357 7-87 (96)
92 2lkz_A RNA-binding protein 5; 99.8 1.5E-18 5E-23 126.6 8.3 77 281-357 8-92 (95)
93 1wi8_A EIF-4B, eukaryotic tran 99.8 2.5E-18 8.6E-23 128.4 9.7 82 104-187 13-95 (104)
94 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.1E-18 1.4E-22 122.3 10.4 78 280-357 5-84 (85)
95 2ek1_A RNA-binding protein 12; 99.8 9E-19 3.1E-23 128.6 7.0 82 104-185 13-94 (95)
96 3q2s_C Cleavage and polyadenyl 99.8 1.1E-18 3.7E-23 148.9 8.5 82 105-186 67-150 (229)
97 1sjq_A Polypyrimidine tract-bi 99.8 1.7E-18 5.8E-23 127.5 8.4 79 102-186 12-92 (105)
98 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.1E-18 3.7E-23 129.3 7.4 82 103-186 16-98 (100)
99 2dh8_A DAZ-associated protein 99.8 1.5E-18 5E-23 129.9 8.1 84 103-187 13-96 (105)
100 3ex7_B RNA-binding protein 8A; 99.8 2.9E-18 1E-22 132.7 9.7 84 103-186 19-102 (126)
101 1uaw_A Mouse-musashi-1; RNP-ty 99.8 8.5E-19 2.9E-23 123.4 6.1 76 107-183 1-76 (77)
102 2cqp_A RNA-binding protein 12; 99.8 1.4E-18 4.9E-23 128.3 7.6 83 104-186 13-95 (98)
103 2rs2_A Musashi-1, RNA-binding 99.8 2.5E-18 8.6E-23 129.3 9.0 84 102-186 21-104 (109)
104 2hvz_A Splicing factor, argini 99.8 1.9E-18 6.4E-23 128.4 8.1 84 107-195 1-100 (101)
105 1x4d_A Matrin 3; structural ge 99.8 2.2E-18 7.5E-23 126.9 8.4 81 104-190 13-96 (102)
106 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.7E-18 1.6E-22 122.5 9.8 78 280-357 4-83 (87)
107 2cqd_A RNA-binding region cont 99.8 3.6E-18 1.2E-22 130.2 9.6 82 104-186 15-96 (116)
108 2err_A Ataxin-2-binding protei 99.7 3.8E-18 1.3E-22 128.4 9.4 79 279-357 26-104 (109)
109 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-17 4E-22 122.3 11.7 78 280-357 14-93 (94)
110 2x1f_A MRNA 3'-END-processing 99.7 8.5E-18 2.9E-22 123.5 11.0 77 281-357 1-79 (96)
111 1u6f_A Tcubp1, RNA-binding pro 99.7 4.9E-18 1.7E-22 133.8 10.4 84 103-186 39-122 (139)
112 1wez_A HnRNP H', FTP-3, hetero 99.7 4E-18 1.4E-22 126.4 9.2 81 102-185 11-91 (102)
113 2dgw_A Probable RNA-binding pr 99.7 6.1E-18 2.1E-22 123.0 10.0 82 102-186 6-87 (91)
114 2wbr_A GW182, gawky, LD47780P; 99.7 6.3E-18 2.2E-22 118.5 9.6 71 282-356 7-77 (89)
115 2cq3_A RNA-binding protein 9; 99.7 1.1E-17 3.6E-22 124.7 11.5 83 103-187 12-94 (103)
116 1whw_A Hypothetical protein ri 99.7 1E-17 3.5E-22 123.9 11.3 78 280-357 6-85 (99)
117 2lea_A Serine/arginine-rich sp 99.7 2E-18 7E-23 134.9 7.8 117 232-357 6-124 (135)
118 3ns6_A Eukaryotic translation 99.7 2.4E-18 8.1E-23 127.4 7.7 77 281-357 5-90 (100)
119 1sjq_A Polypyrimidine tract-bi 99.7 4.7E-18 1.6E-22 125.1 9.2 73 280-356 14-88 (105)
120 2ywk_A Putative RNA-binding pr 99.7 5.2E-18 1.8E-22 124.5 9.5 78 280-357 14-92 (95)
121 2kt5_A RNA and export factor-b 99.7 8.7E-18 3E-22 129.6 11.0 85 102-187 31-115 (124)
122 2cqc_A Arginine/serine-rich sp 99.7 9.2E-18 3.1E-22 123.1 10.6 79 279-357 12-92 (95)
123 2cqg_A TDP-43, TAR DNA-binding 99.7 1E-17 3.4E-22 124.9 10.9 83 103-187 12-94 (103)
124 2krb_A Eukaryotic translation 99.7 2.6E-18 9E-23 122.0 7.4 72 283-354 2-80 (81)
125 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.9E-18 2.7E-22 125.4 10.3 82 103-186 12-93 (103)
126 2do0_A HnRNP M, heterogeneous 99.7 1.1E-17 3.9E-22 127.0 11.4 81 104-185 13-93 (114)
127 2dgx_A KIAA0430 protein; RRM d 99.7 5.3E-18 1.8E-22 124.6 9.2 81 104-187 7-91 (96)
128 2ki2_A SS-DNA binding protein 99.7 7.5E-19 2.5E-23 127.6 4.4 80 107-187 2-81 (90)
129 2wbr_A GW182, gawky, LD47780P; 99.7 5E-18 1.7E-22 119.1 8.4 74 105-184 6-79 (89)
130 1wg5_A Heterogeneous nuclear r 99.7 6.2E-18 2.1E-22 126.1 9.5 81 104-186 13-94 (104)
131 1x5o_A RNA binding motif, sing 99.7 1.7E-17 5.7E-22 126.1 12.0 82 104-186 23-112 (114)
132 2do4_A Squamous cell carcinoma 99.7 1.1E-17 3.6E-22 124.0 10.6 78 280-357 15-93 (100)
133 3r27_A HnRNP L, heterogeneous 99.7 6.8E-18 2.3E-22 123.0 9.3 72 280-355 19-92 (100)
134 2m2b_A RNA-binding protein 10; 99.7 1.9E-18 6.5E-23 134.6 6.9 82 105-187 22-109 (131)
135 1h2v_Z 20 kDa nuclear CAP bind 99.7 1E-17 3.5E-22 134.7 11.3 84 103-186 36-119 (156)
136 1x5u_A Splicing factor 3B subu 99.7 1.2E-17 4.3E-22 124.8 11.0 78 280-357 13-92 (105)
137 2dis_A Unnamed protein product 99.7 4.9E-18 1.7E-22 128.0 8.8 85 103-187 5-93 (109)
138 3md1_A Nuclear and cytoplasmic 99.7 8.6E-18 2.9E-22 120.0 9.5 76 282-357 1-78 (83)
139 2nlw_A Eukaryotic translation 99.7 4.3E-18 1.5E-22 127.2 8.2 80 105-186 14-100 (105)
140 2krb_A Eukaryotic translation 99.7 2.2E-18 7.5E-23 122.4 6.3 74 106-181 1-81 (81)
141 2cpi_A CCR4-NOT transcription 99.7 8E-18 2.8E-22 127.1 9.7 85 105-189 14-104 (111)
142 2cq4_A RNA binding motif prote 99.7 3.2E-18 1.1E-22 130.0 7.5 80 106-186 25-104 (114)
143 1x5s_A Cold-inducible RNA-bind 99.7 1.3E-17 4.3E-22 124.1 10.6 79 279-357 9-89 (102)
144 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4E-22 124.3 10.3 79 279-357 9-89 (102)
145 2hgl_A HNRPF protein, heteroge 99.7 3.8E-18 1.3E-22 132.8 7.9 82 102-185 40-124 (136)
146 2dnz_A Probable RNA-binding pr 99.7 1.2E-17 4E-22 122.5 10.1 78 280-357 3-82 (95)
147 2dnm_A SRP46 splicing factor; 99.7 1.2E-17 4.1E-22 124.4 10.1 78 280-357 11-90 (103)
148 1oo0_B CG8781-PA, drosophila Y 99.7 2E-17 6.9E-22 124.8 11.5 78 280-357 24-103 (110)
149 1rk8_A CG8781-PA, CG8781-PA pr 99.7 8.1E-18 2.8E-22 136.5 9.8 79 280-358 70-150 (165)
150 2cpj_A Non-POU domain-containi 99.7 1.1E-17 3.7E-22 123.7 9.6 85 103-193 12-96 (99)
151 2cpy_A RNA-binding protein 12; 99.7 2.8E-18 9.7E-23 130.2 6.5 82 103-186 12-94 (114)
152 2kt5_A RNA and export factor-b 99.7 3.9E-17 1.3E-21 126.0 12.9 81 278-358 31-112 (124)
153 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 9.2E-18 3.2E-22 132.4 9.6 81 103-183 60-140 (140)
154 1x4a_A Splicing factor, argini 99.7 1.7E-17 5.8E-22 125.0 10.5 82 103-187 19-100 (109)
155 2i2y_A Fusion protein consists 99.7 2.7E-17 9.3E-22 131.3 12.3 117 145-271 10-149 (150)
156 2dgs_A DAZ-associated protein 99.7 2.1E-17 7.2E-22 122.2 10.8 77 280-357 8-86 (99)
157 1x4b_A Heterogeneous nuclear r 99.7 7.6E-18 2.6E-22 128.4 8.6 81 106-187 27-107 (116)
158 2cph_A RNA binding motif prote 99.7 2.8E-17 9.7E-22 123.3 11.6 79 279-357 12-94 (107)
159 2err_A Ataxin-2-binding protei 99.7 8E-18 2.8E-22 126.6 8.6 82 103-186 26-107 (109)
160 2a3j_A U1 small nuclear ribonu 99.7 1.2E-17 4.3E-22 128.3 9.6 82 103-187 26-111 (127)
161 2db1_A Heterogeneous nuclear r 99.7 5.3E-18 1.8E-22 129.4 7.4 81 103-185 14-97 (118)
162 2lea_A Serine/arginine-rich sp 99.7 2.7E-18 9.1E-23 134.2 5.9 83 104-186 45-127 (135)
163 1x4f_A Matrin 3; structural ge 99.7 8.3E-18 2.9E-22 125.6 8.3 84 103-192 22-108 (112)
164 2jwn_A Embryonic polyadenylate 99.7 1E-17 3.5E-22 129.3 9.0 80 106-186 36-115 (124)
165 1x5t_A Splicing factor 3B subu 99.7 1.4E-17 4.7E-22 122.4 9.3 78 280-357 3-83 (96)
166 4a8x_A RNA-binding protein wit 99.7 1.7E-17 5.7E-22 119.9 9.5 77 281-357 3-82 (88)
167 2cq1_A PTB-like protein L; RRM 99.7 2.6E-17 8.8E-22 121.3 10.6 77 104-186 13-91 (101)
168 1p27_B RNA-binding protein 8A; 99.7 1.6E-17 5.4E-22 124.5 9.6 78 280-357 21-100 (106)
169 1x4h_A RNA-binding protein 28; 99.7 3.7E-17 1.3E-21 123.5 11.8 78 280-357 13-98 (111)
170 2ad9_A Polypyrimidine tract-bi 99.7 1.7E-17 5.7E-22 125.3 9.7 78 103-186 28-107 (119)
171 2dnn_A RNA-binding protein 12; 99.7 2.5E-17 8.4E-22 123.2 10.4 76 280-357 14-90 (109)
172 2nlw_A Eukaryotic translation 99.7 1.6E-17 5.5E-22 124.1 9.3 78 280-357 13-97 (105)
173 1wg1_A KIAA1579 protein, homol 99.7 1.5E-17 5.1E-22 120.1 8.8 84 104-194 3-86 (88)
174 3p5t_L Cleavage and polyadenyl 99.7 3.2E-18 1.1E-22 124.2 5.3 75 283-357 2-80 (90)
175 2cq0_A Eukaryotic translation 99.7 1.6E-17 5.3E-22 123.8 9.1 78 280-357 13-92 (103)
176 2dgo_A Cytotoxic granule-assoc 99.7 2.9E-17 9.8E-22 125.0 10.8 78 280-357 13-92 (115)
177 2dnh_A Bruno-like 5, RNA bindi 99.7 2.1E-17 7E-22 123.6 9.8 78 280-357 13-94 (105)
178 1x4a_A Splicing factor, argini 99.7 5.3E-17 1.8E-21 122.2 12.1 77 280-357 20-96 (109)
179 2la6_A RNA-binding protein FUS 99.7 1.8E-17 6.2E-22 122.5 9.3 78 280-357 11-98 (99)
180 1wex_A Hypothetical protein (r 99.7 2.9E-17 9.9E-22 121.8 10.4 78 104-187 13-92 (104)
181 1wel_A RNA-binding protein 12; 99.7 3.9E-18 1.3E-22 131.6 5.9 82 103-185 22-103 (124)
182 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-17 3.9E-22 121.8 8.0 78 280-357 6-83 (92)
183 2jrs_A RNA-binding protein 39; 99.7 1.6E-17 5.5E-22 124.6 9.0 78 280-357 24-103 (108)
184 1x4d_A Matrin 3; structural ge 99.7 1.4E-17 4.7E-22 122.6 8.4 74 280-357 13-89 (102)
185 1iqt_A AUF1, heterogeneous nuc 99.7 2.7E-18 9.3E-23 120.1 4.4 75 108-183 1-75 (75)
186 2fc9_A NCL protein; structure 99.7 2.2E-17 7.6E-22 122.5 9.6 81 103-187 12-92 (101)
187 3ulh_A THO complex subunit 4; 99.7 2.4E-17 8.4E-22 123.7 9.9 78 280-357 27-105 (107)
188 2dgp_A Bruno-like 4, RNA bindi 99.7 3.4E-17 1.1E-21 122.7 10.5 78 280-357 11-93 (106)
189 2cq4_A RNA binding motif prote 99.7 4.7E-17 1.6E-21 123.5 11.4 77 280-357 23-101 (114)
190 2dnn_A RNA-binding protein 12; 99.7 8.1E-18 2.8E-22 125.9 7.0 77 106-185 16-92 (109)
191 2cq1_A PTB-like protein L; RRM 99.7 4.5E-17 1.5E-21 120.0 10.8 74 280-357 13-88 (101)
192 2jvr_A Nucleolar protein 3; RN 99.7 3.2E-17 1.1E-21 122.8 10.1 75 281-357 27-102 (111)
193 2la4_A Nuclear and cytoplasmic 99.7 3.6E-17 1.2E-21 121.3 10.3 83 97-185 18-100 (101)
194 2fy1_A RNA-binding motif prote 99.7 2.4E-17 8E-22 125.4 9.5 78 280-357 5-83 (116)
195 2cpf_A RNA binding motif prote 99.7 1.1E-17 3.7E-22 123.5 7.4 78 280-357 3-85 (98)
196 2cpz_A CUG triplet repeat RNA- 99.7 2.7E-17 9.2E-22 125.1 9.8 78 280-357 23-102 (115)
197 2dnq_A RNA-binding protein 4B; 99.7 4.7E-17 1.6E-21 118.0 10.6 77 103-187 5-81 (90)
198 2d9p_A Polyadenylate-binding p 99.7 2E-17 6.9E-22 123.2 8.8 77 280-357 13-90 (103)
199 3ucg_A Polyadenylate-binding p 99.7 2.4E-17 8.3E-22 119.3 9.0 76 281-357 5-82 (89)
200 1whx_A Hypothetical protein ri 99.7 3.7E-17 1.3E-21 123.3 10.3 75 280-358 8-82 (111)
201 2lmi_A GRSF-1, G-rich sequence 99.7 5.1E-18 1.7E-22 127.3 5.5 81 103-185 8-91 (107)
202 2mss_A Protein (musashi1); RNA 99.7 1.5E-17 5E-22 116.3 7.3 72 284-356 1-74 (75)
203 2fc8_A NCL protein; structure 99.7 4.7E-17 1.6E-21 120.9 10.4 82 103-187 12-93 (102)
204 2khc_A Testis-specific RNP-typ 99.7 4.4E-17 1.5E-21 124.5 10.5 78 280-357 38-117 (118)
205 2do0_A HnRNP M, heterogeneous 99.7 4.8E-17 1.6E-21 123.5 10.6 78 280-357 13-91 (114)
206 3s7r_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 117.7 9.4 76 280-356 9-86 (87)
207 1wi8_A EIF-4B, eukaryotic tran 99.7 6.8E-17 2.3E-21 120.5 11.0 76 280-357 13-91 (104)
208 2kxn_B Transformer-2 protein h 99.7 2.5E-17 8.7E-22 127.5 8.8 78 280-357 44-123 (129)
209 1x4e_A RNA binding motif, sing 99.7 6.9E-18 2.4E-22 121.1 5.2 77 280-356 3-81 (85)
210 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.5E-17 5.1E-22 123.1 7.1 77 279-357 16-95 (100)
211 1nu4_A U1A RNA binding domain; 99.7 1.6E-17 5.4E-22 122.3 7.2 82 103-187 5-90 (97)
212 1why_A Hypothetical protein ri 99.7 6.2E-17 2.1E-21 119.1 10.3 79 103-187 14-94 (97)
213 2ytc_A PRE-mRNA-splicing facto 99.7 5.2E-17 1.8E-21 116.5 9.7 74 280-357 10-84 (85)
214 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.4E-17 4.8E-22 117.1 6.5 75 283-358 1-77 (77)
215 2cpy_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 123.9 9.4 77 280-357 13-91 (114)
216 1wex_A Hypothetical protein (r 99.7 4.2E-17 1.5E-21 120.9 9.4 74 280-357 13-88 (104)
217 2cpe_A RNA-binding protein EWS 99.7 6.3E-17 2.1E-21 122.7 10.5 78 280-357 13-100 (113)
218 2cqd_A RNA-binding region cont 99.7 9E-17 3.1E-21 122.4 11.4 77 280-357 15-93 (116)
219 1fj7_A Nucleolin RBD1, protein 99.7 2.5E-18 8.4E-23 127.7 2.6 81 104-186 15-95 (101)
220 1wg5_A Heterogeneous nuclear r 99.7 5.5E-17 1.9E-21 120.9 9.9 77 280-357 13-91 (104)
221 2a3j_A U1 small nuclear ribonu 99.7 5.4E-17 1.8E-21 124.8 9.9 77 280-357 27-107 (127)
222 2xnq_A Nuclear polyadenylated 99.7 7.7E-17 2.6E-21 118.4 10.3 78 101-186 17-95 (97)
223 3pgw_S U1-70K; protein-RNA com 99.7 6.3E-18 2.1E-22 157.5 5.4 78 280-357 100-179 (437)
224 1x4g_A Nucleolysin TIAR; struc 99.7 6.3E-17 2.2E-21 121.8 9.9 81 101-187 20-100 (109)
225 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.2E-16 4.1E-21 126.0 12.0 78 279-356 60-139 (140)
226 2diu_A KIAA0430 protein; struc 99.7 8.4E-17 2.9E-21 113.8 9.7 80 104-193 7-91 (96)
227 2ad9_A Polypyrimidine tract-bi 99.7 3.5E-17 1.2E-21 123.6 8.3 74 280-357 29-104 (119)
228 2cpi_A CCR4-NOT transcription 99.7 3.4E-17 1.2E-21 123.6 8.3 78 280-357 13-98 (111)
229 2div_A TRNA selenocysteine ass 99.7 3.7E-17 1.3E-21 120.8 8.3 77 280-356 7-90 (99)
230 2dnq_A RNA-binding protein 4B; 99.7 6.5E-17 2.2E-21 117.2 9.4 72 280-357 6-77 (90)
231 2dhg_A TRNA selenocysteine ass 99.7 3.1E-17 1E-21 122.4 7.9 78 280-357 7-87 (104)
232 2db1_A Heterogeneous nuclear r 99.7 3.4E-17 1.2E-21 124.9 8.2 77 280-357 15-95 (118)
233 2cpj_A Non-POU domain-containi 99.7 6E-17 2E-21 119.7 9.3 74 280-357 13-86 (99)
234 2ytc_A PRE-mRNA-splicing facto 99.7 5.5E-17 1.9E-21 116.3 8.8 76 103-184 9-85 (85)
235 2jvr_A Nucleolar protein 3; RN 99.7 2.3E-17 7.9E-22 123.6 7.0 81 101-185 23-104 (111)
236 2dgw_A Probable RNA-binding pr 99.7 7.1E-17 2.4E-21 117.3 9.5 76 280-357 8-84 (91)
237 2xnq_A Nuclear polyadenylated 99.7 1.1E-16 3.9E-21 117.5 10.6 73 279-357 19-92 (97)
238 2dng_A Eukaryotic translation 99.7 7.1E-17 2.4E-21 120.2 9.7 76 280-357 13-90 (103)
239 1x4c_A Splicing factor, argini 99.7 8.3E-17 2.8E-21 120.8 10.1 78 103-187 12-94 (108)
240 1p1t_A Cleavage stimulation fa 99.7 2.4E-17 8.1E-22 123.1 7.0 78 280-357 6-85 (104)
241 2dha_A FLJ20171 protein; RRM d 99.7 1.8E-17 6.1E-22 126.6 6.3 80 103-184 20-103 (123)
242 3n9u_C Cleavage and polyadenyl 99.7 5.7E-17 1.9E-21 129.7 9.5 77 281-357 54-134 (156)
243 3ex7_B RNA-binding protein 8A; 99.7 9.7E-17 3.3E-21 124.1 10.5 78 280-357 20-99 (126)
244 2e5j_A Methenyltetrahydrofolat 99.7 5.6E-17 1.9E-21 119.3 8.4 79 104-187 17-95 (97)
245 2cpx_A Hypothetical protein FL 99.7 1E-17 3.5E-22 127.5 4.6 84 104-187 23-106 (115)
246 3lqv_A PRE-mRNA branch site pr 99.7 1E-16 3.5E-21 121.9 10.0 77 280-357 6-82 (115)
247 1why_A Hypothetical protein ri 99.7 1.8E-16 6.1E-21 116.6 10.9 74 280-357 15-90 (97)
248 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-16 4.6E-21 119.8 10.4 78 280-358 23-102 (109)
249 2j8a_A Histone-lysine N-methyl 99.7 3.3E-17 1.1E-21 122.6 6.9 79 107-185 3-95 (136)
250 1fjc_A Nucleolin RBD2, protein 99.7 2.8E-17 9.6E-22 120.7 6.5 78 105-187 15-92 (96)
251 1whx_A Hypothetical protein ri 99.7 4.5E-17 1.5E-21 122.8 7.6 75 105-185 9-83 (111)
252 2dnp_A RNA-binding protein 14; 99.7 1.5E-16 5.1E-21 115.3 10.1 72 280-357 7-78 (90)
253 2f3j_A RNA and export factor b 99.7 7.2E-17 2.5E-21 132.0 9.3 86 102-188 84-169 (177)
254 2lcw_A RNA-binding protein FUS 99.5 2.1E-18 7.2E-23 131.5 0.0 83 104-186 5-95 (116)
255 2hgm_A HNRPF protein, heteroge 99.7 3.6E-17 1.2E-21 125.2 6.8 81 102-185 38-120 (126)
256 1wf1_A RNA-binding protein RAL 99.7 1.8E-16 6E-21 119.5 10.5 91 258-357 6-97 (110)
257 1x4g_A Nucleolysin TIAR; struc 99.7 1.4E-16 4.9E-21 119.8 9.9 74 280-357 23-96 (109)
258 2m2b_A RNA-binding protein 10; 99.7 3.9E-17 1.3E-21 127.2 7.0 77 280-357 21-105 (131)
259 2dh8_A DAZ-associated protein 99.7 7.3E-17 2.5E-21 120.6 8.3 77 280-357 14-92 (105)
260 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-16 4.2E-21 119.7 9.5 77 102-186 27-103 (108)
261 1wez_A HnRNP H', FTP-3, hetero 99.7 4.5E-17 1.5E-21 120.7 7.0 77 280-358 13-90 (102)
262 2cqp_A RNA-binding protein 12; 99.7 4.2E-17 1.4E-21 120.3 6.7 78 280-357 13-92 (98)
263 1x4b_A Heterogeneous nuclear r 99.7 1.8E-16 6.1E-21 120.7 10.4 78 279-357 24-103 (116)
264 1u6f_A Tcubp1, RNA-binding pro 99.7 1.5E-16 5.2E-21 125.2 10.2 79 279-357 39-119 (139)
265 2dgu_A Heterogeneous nuclear r 99.7 2.2E-16 7.6E-21 117.5 10.6 72 280-357 9-80 (103)
266 2ek1_A RNA-binding protein 12; 99.7 2.9E-17 9.8E-22 120.5 5.6 78 280-357 13-92 (95)
267 2xs2_A Deleted in azoospermia- 99.7 2E-17 6.9E-22 123.0 4.8 80 105-187 8-87 (102)
268 2jvo_A Nucleolar protein 3; nu 99.7 1.3E-16 4.4E-21 119.6 9.2 73 279-357 28-100 (108)
269 2lmi_A GRSF-1, G-rich sequence 99.7 4.4E-17 1.5E-21 122.1 6.6 77 280-357 9-89 (107)
270 1x4c_A Splicing factor, argini 99.7 3.2E-16 1.1E-20 117.6 11.3 73 280-357 13-90 (108)
271 2hgl_A HNRPF protein, heteroge 99.7 3.9E-17 1.3E-21 127.0 6.3 77 280-357 42-122 (136)
272 1iqt_A AUF1, heterogeneous nuc 99.7 6.9E-17 2.4E-21 112.8 7.0 72 284-356 1-74 (75)
273 2dgt_A RNA-binding protein 30; 99.7 1.9E-16 6.5E-21 115.3 9.5 78 102-187 6-83 (92)
274 2ki2_A SS-DNA binding protein 99.7 3.2E-17 1.1E-21 118.9 5.3 74 283-357 2-77 (90)
275 2la4_A Nuclear and cytoplasmic 99.7 1.3E-16 4.4E-21 118.4 8.7 73 281-357 26-98 (101)
276 2dgt_A RNA-binding protein 30; 99.7 3.3E-16 1.1E-20 114.0 10.7 72 280-357 8-79 (92)
277 2hgn_A Heterogeneous nuclear r 99.7 2.1E-17 7.2E-22 128.9 4.5 81 103-186 43-123 (139)
278 2cpd_A Apobec-1 stimulating pr 99.7 5E-16 1.7E-20 114.6 11.8 72 280-357 13-86 (99)
279 2fc9_A NCL protein; structure 99.7 2.7E-16 9.4E-21 116.6 10.2 75 280-357 13-88 (101)
280 2dnl_A Cytoplasmic polyadenyla 99.7 2E-16 6.8E-21 120.0 9.5 78 104-184 6-86 (114)
281 1nu4_A U1A RNA binding domain; 99.7 1.2E-16 4E-21 117.7 8.0 77 280-357 6-86 (97)
282 2kvi_A Nuclear polyadenylated 99.7 1.3E-16 4.4E-21 117.1 8.1 76 103-186 7-83 (96)
283 2dis_A Unnamed protein product 99.7 2.3E-16 7.8E-21 118.7 9.6 78 280-357 6-89 (109)
284 3md3_A Nuclear and cytoplasmic 99.7 3.5E-16 1.2E-20 126.9 11.4 82 103-184 84-165 (166)
285 2dnp_A RNA-binding protein 14; 99.7 2E-16 6.9E-21 114.6 8.8 77 102-186 5-81 (90)
286 2cqg_A TDP-43, TAR DNA-binding 99.7 4E-16 1.4E-20 116.1 10.6 76 280-357 13-90 (103)
287 2kvi_A Nuclear polyadenylated 99.7 1.7E-16 5.9E-21 116.4 8.4 72 280-357 8-80 (96)
288 1x4f_A Matrin 3; structural ge 99.7 9.6E-17 3.3E-21 119.8 6.9 74 280-357 23-99 (112)
289 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.8E-16 9.7E-21 126.2 10.1 78 280-357 37-116 (156)
290 2hvz_A Splicing factor, argini 99.7 1.2E-16 4.1E-21 118.5 7.3 72 283-357 1-72 (101)
291 2hgn_A Heterogeneous nuclear r 99.7 5E-17 1.7E-21 126.8 5.4 76 280-357 44-120 (139)
292 2cpd_A Apobec-1 stimulating pr 99.7 4.6E-16 1.6E-20 114.9 10.3 76 104-187 13-90 (99)
293 2hzc_A Splicing factor U2AF 65 99.7 4.2E-16 1.5E-20 112.2 9.9 71 280-355 4-85 (87)
294 2e44_A Insulin-like growth fac 99.7 1.9E-16 6.5E-21 116.3 8.1 79 104-186 13-92 (96)
295 2cpx_A Hypothetical protein FL 99.7 2.8E-16 9.5E-21 119.5 9.3 76 280-357 23-102 (115)
296 2dgu_A Heterogeneous nuclear r 99.7 2.5E-16 8.7E-21 117.2 8.7 76 104-187 9-84 (103)
297 3egn_A RNA-binding protein 40; 99.7 3.3E-17 1.1E-21 129.7 3.8 84 103-186 42-130 (143)
298 2cq2_A Hypothetical protein LO 99.7 3.3E-16 1.1E-20 116.9 9.0 72 280-355 23-101 (114)
299 2jwn_A Embryonic polyadenylate 99.7 1.2E-16 4.2E-21 123.2 6.9 77 280-357 34-112 (124)
300 1x5o_A RNA binding motif, sing 99.7 4.9E-16 1.7E-20 117.9 10.0 77 280-356 23-108 (114)
301 2e5g_A U6 snRNA-specific termi 99.7 4E-16 1.4E-20 114.0 9.1 77 104-186 6-82 (94)
302 2hgm_A HNRPF protein, heteroge 99.7 2.7E-16 9.4E-21 120.3 8.5 76 280-357 40-118 (126)
303 2e5j_A Methenyltetrahydrofolat 99.7 3.2E-16 1.1E-20 115.2 8.5 75 280-357 17-91 (97)
304 2cqh_A IGF-II mRNA-binding pro 99.7 1.3E-16 4.6E-21 116.3 6.3 77 103-186 5-83 (93)
305 1wel_A RNA-binding protein 12; 99.7 1.2E-16 4E-21 123.2 6.2 77 280-357 23-101 (124)
306 3beg_B Splicing factor, argini 99.6 1.5E-16 5E-21 120.8 6.6 73 280-357 14-86 (115)
307 2voo_A Lupus LA protein; RNA-b 99.6 7.8E-16 2.7E-20 127.7 11.6 117 240-357 64-184 (193)
308 2dha_A FLJ20171 protein; RRM d 99.6 1.4E-16 4.6E-21 121.7 6.2 76 281-357 22-102 (123)
309 2g4b_A Splicing factor U2AF 65 99.6 6.1E-16 2.1E-20 126.3 10.0 79 105-183 93-171 (172)
310 4f02_A Polyadenylate-binding p 99.6 5.1E-16 1.7E-20 131.4 9.7 78 280-357 13-92 (213)
311 2xs2_A Deleted in azoospermia- 99.6 2.8E-16 9.5E-21 116.7 7.0 76 280-357 7-83 (102)
312 3zzy_A Polypyrimidine tract-bi 99.6 8.3E-16 2.8E-20 117.5 9.8 80 103-187 25-107 (130)
313 1wf1_A RNA-binding protein RAL 99.6 4.6E-16 1.6E-20 117.2 8.0 74 105-186 26-100 (110)
314 2f3j_A RNA and export factor b 99.6 8.5E-16 2.9E-20 125.6 10.2 80 279-358 85-165 (177)
315 2e44_A Insulin-like growth fac 99.6 9E-16 3.1E-20 112.6 9.1 76 280-357 13-89 (96)
316 3pgw_S U1-70K; protein-RNA com 99.6 6.3E-16 2.1E-20 144.0 10.2 82 105-186 101-182 (437)
317 2pe8_A Splicing factor 45; RRM 99.6 1.5E-15 5E-20 112.8 10.2 83 103-185 5-93 (105)
318 1fjc_A Nucleolin RBD2, protein 99.6 3.1E-16 1.1E-20 115.1 6.4 75 280-357 14-88 (96)
319 2dnl_A Cytoplasmic polyadenyla 99.6 8.7E-16 3E-20 116.4 9.0 78 280-358 6-99 (114)
320 2yh0_A Splicing factor U2AF 65 99.6 1E-15 3.5E-20 128.0 10.2 85 103-187 111-195 (198)
321 1fj7_A Nucleolin RBD1, protein 99.6 1.6E-16 5.6E-21 117.8 4.5 76 280-357 15-92 (101)
322 1sjr_A Polypyrimidine tract-bi 99.6 1.3E-15 4.3E-20 120.9 9.9 81 103-187 43-125 (164)
323 1x5p_A Negative elongation fac 99.6 1.7E-15 5.9E-20 111.3 10.0 77 103-187 12-88 (97)
324 2e5g_A U6 snRNA-specific termi 99.6 1E-15 3.5E-20 111.8 8.7 74 280-357 6-79 (94)
325 3d2w_A TAR DNA-binding protein 99.6 1.2E-15 4.1E-20 110.0 8.7 76 102-186 7-84 (89)
326 3q2s_C Cleavage and polyadenyl 99.6 5E-16 1.7E-20 132.3 7.7 77 281-357 67-147 (229)
327 2cqh_A IGF-II mRNA-binding pro 99.6 6.2E-16 2.1E-20 112.8 7.2 73 280-357 6-80 (93)
328 1wg1_A KIAA1579 protein, homol 99.6 6.7E-16 2.3E-20 111.3 7.1 72 281-357 4-75 (88)
329 1x5p_A Negative elongation fac 99.6 3.9E-15 1.3E-19 109.4 11.0 72 280-357 13-84 (97)
330 1b7f_A Protein (SXL-lethal pro 99.6 2.9E-15 9.9E-20 121.7 11.4 80 104-183 87-168 (168)
331 2cq2_A Hypothetical protein LO 99.6 8.2E-16 2.8E-20 114.8 7.3 78 101-184 20-104 (114)
332 2diu_A KIAA0430 protein; struc 99.6 1.6E-15 5.6E-20 107.3 8.4 67 281-355 7-79 (96)
333 2e5i_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 113.4 10.7 75 107-187 26-103 (124)
334 2pe8_A Splicing factor 45; RRM 99.6 2.7E-15 9.3E-20 111.3 9.8 78 280-357 6-91 (105)
335 1l3k_A Heterogeneous nuclear r 99.6 2.5E-15 8.4E-20 125.4 10.5 83 104-187 102-184 (196)
336 3beg_B Splicing factor, argini 99.6 1.2E-15 4.2E-20 115.7 7.6 75 104-185 14-93 (115)
337 3tyt_A Heterogeneous nuclear r 99.6 2.7E-15 9.2E-20 125.8 10.4 74 281-357 3-77 (205)
338 3d2w_A TAR DNA-binding protein 99.6 4.3E-15 1.5E-19 107.1 10.0 71 280-357 9-81 (89)
339 2hzc_A Splicing factor U2AF 65 99.6 1.3E-15 4.6E-20 109.5 7.2 72 104-182 4-86 (87)
340 1sjr_A Polypyrimidine tract-bi 99.6 2.7E-15 9.2E-20 119.0 9.5 75 280-356 44-120 (164)
341 2fc8_A NCL protein; structure 99.6 2.4E-15 8.2E-20 111.6 8.5 76 279-357 12-89 (102)
342 2lcw_A RNA-binding protein FUS 99.4 9E-17 3.1E-21 122.4 0.0 78 280-357 5-92 (116)
343 3egn_A RNA-binding protein 40; 99.6 9.2E-16 3.2E-20 121.3 5.7 77 280-357 43-127 (143)
344 2e5i_A Heterogeneous nuclear r 99.6 7.6E-15 2.6E-19 111.7 10.4 70 283-356 26-98 (124)
345 2voo_A Lupus LA protein; RNA-b 99.6 4.8E-15 1.6E-19 123.0 10.0 78 106-185 109-186 (193)
346 3v4m_A Splicing factor U2AF 65 99.6 6.2E-15 2.1E-19 109.5 9.5 78 280-357 3-94 (105)
347 3zzy_A Polypyrimidine tract-bi 99.6 4.9E-15 1.7E-19 113.2 8.7 72 282-356 28-102 (130)
348 2j8a_A Histone-lysine N-methyl 99.6 2.8E-15 9.6E-20 112.2 7.0 73 283-355 3-91 (136)
349 3nmr_A Cugbp ELAV-like family 99.6 9.3E-15 3.2E-19 119.5 10.8 79 105-184 94-175 (175)
350 1wf0_A TDP-43, TAR DNA-binding 99.6 1.7E-15 5.8E-20 109.2 5.2 77 104-187 3-79 (88)
351 2bz2_A Negative elongation fac 99.6 8.4E-15 2.9E-19 111.9 9.2 77 102-186 35-111 (121)
352 1fje_B Nucleolin RBD12, protei 99.6 7.9E-15 2.7E-19 120.0 8.8 77 105-186 98-174 (175)
353 2bz2_A Negative elongation fac 99.5 1.1E-14 3.9E-19 111.1 8.1 72 280-357 37-108 (121)
354 1wf0_A TDP-43, TAR DNA-binding 99.5 7.4E-15 2.5E-19 105.8 6.4 73 280-357 3-75 (88)
355 2adc_A Polypyrimidine tract-bi 99.5 2.4E-14 8.2E-19 122.5 10.8 78 277-357 29-107 (229)
356 2dit_A HIV TAT specific factor 99.5 3.4E-14 1.2E-18 107.1 10.2 76 280-357 13-99 (112)
357 3u1l_A PRE-mRNA-splicing facto 99.5 1.8E-14 6E-19 122.1 8.9 99 254-358 108-227 (240)
358 2dit_A HIV TAT specific factor 99.5 4E-14 1.4E-18 106.8 9.9 84 102-189 11-105 (112)
359 3u1l_A PRE-mRNA-splicing facto 99.5 2.2E-14 7.4E-19 121.6 8.8 80 102-187 130-230 (240)
360 3v4m_A Splicing factor U2AF 65 99.5 6.3E-14 2.1E-18 104.0 7.9 81 105-185 4-96 (105)
361 1jmt_A Splicing factor U2AF 35 99.5 1.4E-14 4.9E-19 107.3 4.3 71 287-357 20-103 (104)
362 1qm9_A Polypyrimidine tract-bi 99.5 5.5E-14 1.9E-18 117.4 8.3 73 282-357 3-76 (198)
363 3pgw_A U1-A; protein-RNA compl 99.5 1.2E-13 4.2E-18 121.9 10.8 77 280-357 7-87 (282)
364 3ue2_A Poly(U)-binding-splicin 99.5 5.6E-14 1.9E-18 106.3 6.8 78 280-357 18-106 (118)
365 1jmt_A Splicing factor U2AF 35 99.5 2.2E-14 7.7E-19 106.3 3.6 73 111-184 20-104 (104)
366 3s6e_A RNA-binding protein 39; 99.5 3.5E-13 1.2E-17 101.2 10.0 77 280-358 5-91 (114)
367 3ue2_A Poly(U)-binding-splicin 99.5 2E-13 7E-18 103.2 8.3 81 105-185 19-108 (118)
368 3tht_A Alkylated DNA repair pr 99.4 7E-13 2.4E-17 118.4 10.0 75 280-358 16-95 (345)
369 2d9o_A DNAJ (HSP40) homolog, s 99.4 4.7E-12 1.6E-16 92.6 10.3 74 106-186 10-90 (100)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.5E-12 1.9E-16 92.2 9.5 71 282-357 10-87 (100)
371 3s6e_A RNA-binding protein 39; 99.3 1.4E-11 4.9E-16 92.3 8.7 79 103-185 4-92 (114)
372 1owx_A Lupus LA protein, SS-B, 99.3 1.9E-11 6.7E-16 91.6 9.2 74 280-357 16-93 (121)
373 3tht_A Alkylated DNA repair pr 99.3 1E-11 3.4E-16 110.9 8.2 77 102-184 14-97 (345)
374 2dnr_A Synaptojanin-1; RRM dom 99.2 3.3E-11 1.1E-15 84.5 8.0 70 280-356 5-82 (91)
375 1owx_A Lupus LA protein, SS-B, 99.1 2.5E-10 8.6E-15 85.6 9.4 74 104-183 16-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 1.3E-10 4.5E-15 81.4 7.1 74 104-186 5-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 8.8E-11 3E-15 82.7 5.6 70 280-356 13-91 (95)
378 2l9w_A U4/U6 snRNA-associated- 98.9 6.6E-09 2.2E-13 74.4 9.5 72 282-357 21-97 (117)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 1.1E-09 3.7E-14 77.1 4.3 74 102-184 11-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.9 1.7E-09 5.7E-14 91.8 5.8 64 294-357 141-210 (222)
381 3dxb_A Thioredoxin N-terminall 98.8 9.3E-09 3.2E-13 87.1 9.1 83 103-185 121-212 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.5 5.3E-07 1.8E-11 64.6 8.1 72 105-182 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.3 1.2E-05 4E-10 57.3 11.4 87 104-199 6-99 (104)
384 1wwh_A Nucleoporin 35, nucleop 98.3 6.4E-06 2.2E-10 60.7 9.2 73 280-358 22-95 (119)
385 2dhx_A Poly (ADP-ribose) polym 98.1 2.2E-05 7.6E-10 55.9 8.4 71 281-358 7-82 (104)
386 1wey_A Calcipressin 1; structu 97.9 2.7E-05 9.3E-10 55.7 6.6 70 282-355 5-79 (104)
387 3p3d_A Nucleoporin 53; structu 97.9 2.2E-05 7.4E-10 58.7 5.5 73 283-357 8-96 (132)
388 1uw4_A UPF3X; nonsense mediate 97.8 9.5E-05 3.3E-09 52.1 7.9 68 107-174 2-71 (91)
389 1uw4_A UPF3X; nonsense mediate 97.8 6.2E-05 2.1E-09 53.0 6.9 66 283-348 2-71 (91)
390 1wey_A Calcipressin 1; structu 97.8 3E-05 1E-09 55.5 5.2 74 106-185 5-83 (104)
391 1whv_A Poly(A)-specific ribonu 97.6 0.00021 7.3E-09 50.2 7.4 58 103-169 13-70 (100)
392 1whv_A Poly(A)-specific ribonu 97.6 0.00021 7.2E-09 50.2 6.8 54 283-343 17-70 (100)
393 3ctr_A Poly(A)-specific ribonu 97.3 0.00026 8.9E-09 49.9 4.4 54 283-343 7-60 (101)
394 2l08_A Regulator of nonsense t 97.2 0.00045 1.6E-08 48.8 5.0 69 106-174 9-79 (97)
395 2l08_A Regulator of nonsense t 97.2 0.0006 2E-08 48.2 5.2 68 281-348 8-79 (97)
396 3ctr_A Poly(A)-specific ribonu 97.0 0.0011 3.9E-08 46.7 5.4 54 107-169 7-60 (101)
397 1wwh_A Nucleoporin 35, nucleop 97.0 0.0028 9.4E-08 46.7 7.2 71 105-183 23-94 (119)
398 3pq1_A Poly(A) RNA polymerase; 96.1 0.0028 9.7E-08 58.5 3.1 56 105-166 52-107 (464)
399 3pq1_A Poly(A) RNA polymerase; 96.0 0.003 1E-07 58.4 2.8 56 282-341 53-108 (464)
400 3p3d_A Nucleoporin 53; structu 95.1 0.016 5.5E-07 43.3 3.5 77 106-184 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 89.0 1.2 4.2E-05 41.8 8.3 55 282-343 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 87.6 1.5 5E-05 41.3 7.8 56 106-170 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 80.4 5.2 0.00018 26.4 6.1 59 292-357 11-74 (76)
404 4eyt_A Telomerase associated p 75.3 16 0.00056 24.7 8.0 59 280-344 10-68 (129)
405 4e8u_A Putative uncharacterize 70.6 4.3 0.00015 31.8 3.9 50 283-333 13-73 (172)
406 4eyt_A Telomerase associated p 66.9 27 0.00092 23.7 8.3 59 104-170 10-68 (129)
407 2g0c_A ATP-dependent RNA helic 55.9 34 0.0012 22.2 5.9 58 118-184 13-75 (76)
408 4e8u_A Putative uncharacterize 49.7 35 0.0012 26.6 5.6 55 108-165 14-80 (172)
409 2kvo_A Photosystem II reaction 40.6 4.9 0.00017 29.1 -0.4 52 309-360 15-84 (120)
410 3j21_T 50S ribosomal protein L 36.6 73 0.0025 21.6 5.0 56 285-341 25-82 (86)
411 3fry_A Probable copper-exporti 33.7 88 0.003 19.6 5.5 54 283-341 7-60 (73)
412 3h7h_B Transcription elongatio 32.9 46 0.0016 23.6 3.7 36 308-346 40-75 (106)
413 2exu_A Transcription initiatio 29.0 60 0.0021 26.0 4.2 44 309-357 139-182 (200)
414 3ced_A Methionine import ATP-b 25.0 1.7E+02 0.0058 20.1 5.6 68 101-170 15-87 (98)
415 2i9x_A Putative septation prot 23.0 1.2E+02 0.0042 20.5 4.2 25 132-156 5-29 (87)
416 1vq8_S 50S ribosomal protein L 21.5 1.2E+02 0.0042 20.4 4.0 54 286-340 25-80 (85)
417 4bby_A Alkyldihydroxyacetoneph 20.4 60 0.002 31.4 3.2 45 298-342 359-408 (658)
418 2i9z_A Putative septation prot 20.1 1.5E+02 0.0051 20.9 4.3 25 132-156 5-29 (105)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.7e-46 Score=331.85 Aligned_cols=248 Identities=18% Similarity=0.298 Sum_probs=211.6
Q ss_pred hcCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 100 ~~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
...++..++|||+|||+++|+++|+.+|+.||.|..|.+++++. .++|||||+|.+.++|.+|+. +++..+.|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 34456789999999999999999999999999999999999874 358999999999999999994 899999999999
Q ss_pred EeecCcccceeecCCCCCCCHHHHHHHHHhhC-CceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccC
Q 018159 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (360)
Q Consensus 180 v~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~ 258 (360)
|.++. .++|||+|||+.+++++|+.+|..+| . |..+.++++. .+.++|||||.|.+.++|.+|+..+++. .+.
T Consensus 112 v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~ 185 (292)
T 2ghp_A 112 VSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSLR--FNTSRRFAYIDVTSKEDARYCVEKLNGL--KIE 185 (292)
T ss_dssp EEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EET
T ss_pred EEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeCC--CCCcceEEEEEECCHHHHHHHHHHhCCC--EeC
Confidence 99985 78999999999999999999999999 7 9999999873 3788999999999999999999998865 668
Q ss_pred CCCceeeecCCCCCCCcc-ccccccceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEcCCCCC--CC-CCeEEEEeCCHH
Q 018159 259 GNTPTISWADPKSTPDHS-AAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAERS 333 (360)
Q Consensus 259 ~~~~~v~~~~~~~~~~~~-~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~--~~-kg~afV~F~~~~ 333 (360)
|+.+.+.++.+....... ......++|||+|||.. +++++|+++|++||.|..|+|+.+.. +. +|||||+|.+++
T Consensus 186 g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 186 GYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp TEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 999999999887665544 45567789999999999 99999999999999999999998875 44 899999999999
Q ss_pred HHHHHHHhhCCceeCCeeEeEEee
Q 018159 334 SALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 334 ~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+|.+|+ .|||..|+|++|.|.+.
T Consensus 266 ~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 266 SAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp HHHHHG-GGTTEEETTEEEEEEEC
T ss_pred HHHHHH-HhcCCEECCcEEEEEEe
Confidence 999999 99999999999999864
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.6e-46 Score=331.58 Aligned_cols=241 Identities=21% Similarity=0.371 Sum_probs=221.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..++++|||+|||+++|+++|+++|+.|| |..+.+ ++++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34679999999999999999999999999 999888 56789999999999999999999999999999999999
Q ss_pred cCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCc
Q 018159 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (360)
Q Consensus 183 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~ 262 (360)
+.+..+|||+|||+.+++++|+.+|++||. |..+.++++ ..++.++|||||.|.+.++|..|+..+++. .+.|+.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i 167 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTL 167 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEEC
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEE
Confidence 999999999999999999999999999998 999999988 567899999999999999999999999864 6789999
Q ss_pred eeeecCCCCCCCccccccccceEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHH
Q 018159 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNT-STEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 263 ~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~ 340 (360)
.+.++.+..... .....++|||+|||..+ ++++|+++|++||.|..|+|+.+..+. +|||||+|.++++|.+|+.
T Consensus 168 ~v~~a~~~~~~~---~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 244 (284)
T 3smz_A 168 YVHWTDAGQLTP---ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQ 244 (284)
T ss_dssp EEEECCGGGCCT---TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHH
T ss_pred EEEECCCCCCCc---ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHH
Confidence 999998765432 22457899999999995 999999999999999999998887666 8999999999999999999
Q ss_pred hhCCceeCCeeEeEEee
Q 018159 341 DTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 341 ~lng~~~~G~~l~v~p~ 357 (360)
.|||..|+|++|+|...
T Consensus 245 ~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 245 QADGLSLGGSHLRVSFC 261 (284)
T ss_dssp HHTTCEETTEECEEEEC
T ss_pred HhCCCccCCeEEEEEEe
Confidence 99999999999999764
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.6e-34 Score=245.76 Aligned_cols=165 Identities=21% Similarity=0.436 Sum_probs=147.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+.+||||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred cccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCcee
Q 018159 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
.... ..
T Consensus 94 ~~~~-----------------------------------------------------------~~--------------- 99 (213)
T 4f02_A 94 RDPS-----------------------------------------------------------LR--------------- 99 (213)
T ss_dssp CCTH-----------------------------------------------------------HH---------------
T ss_pred cccc-----------------------------------------------------------cc---------------
Confidence 2110 00
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC
Q 018159 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng 344 (360)
....++|||+|||..+|+++|+++|++||.|..|+|+.+..+.+|||||+|.+.++|.+|++.|||
T Consensus 100 --------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 100 --------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp --------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred --------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 011247999999999999999999999999999999888766699999999999999999999999
Q ss_pred ceeCCeeEeEEee
Q 018159 345 YEIDGKSHLHFPV 357 (360)
Q Consensus 345 ~~~~G~~l~v~p~ 357 (360)
..|+|++|.|.+.
T Consensus 166 ~~~~g~~i~V~~a 178 (213)
T 4f02_A 166 MLLNDRKVFVGRF 178 (213)
T ss_dssp CEETTEECEEEEC
T ss_pred CEECCEEEEEEEc
Confidence 9999999999763
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.7e-33 Score=228.53 Aligned_cols=162 Identities=24% Similarity=0.466 Sum_probs=146.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
++++|||+|||+++|+++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999876
Q ss_pred cccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCcee
Q 018159 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3210
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC-CCC-CCeEEEEeCCHHHHHHHHHhh
Q 018159 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~~l 342 (360)
....++|+|+|||..+++++|+++|++||.|..|.++.+. .+. +|||||+|.+.++|.+|+..|
T Consensus 86 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 86 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp --------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 0123589999999999999999999999999999998776 333 899999999999999999999
Q ss_pred CCceeCC--eeEeEEe
Q 018159 343 EKYEIDG--KSHLHFP 356 (360)
Q Consensus 343 ng~~~~G--~~l~v~p 356 (360)
||..|.| ++|+|..
T Consensus 152 ~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCCCTTCSSCCEEEE
T ss_pred cCCEecCCCeEEEEEe
Confidence 9999988 8888864
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=225.38 Aligned_cols=162 Identities=17% Similarity=0.336 Sum_probs=144.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCcc
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
++|||+|||+++|+++|+++|++||.|.++.++.++. |+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999875 889999999999999999999999999999999999887532
Q ss_pred cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeee
Q 018159 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (360)
Q Consensus 187 ~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (360)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred cCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCC
Q 018159 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng 344 (360)
....+.++|||+|||..+++++|+++|++||.|..+.++.+..+ . +|||||+|.+.++|.+|+..|||
T Consensus 82 ----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 82 ----------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp ----------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred ----------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 00023468999999999999999999999999999999877443 3 89999999999999999999999
Q ss_pred ceeCCeeEeEEee
Q 018159 345 YEIDGKSHLHFPV 357 (360)
Q Consensus 345 ~~~~G~~l~v~p~ 357 (360)
..|+|++|.|.+.
T Consensus 152 ~~~~g~~i~v~~a 164 (166)
T 3md3_A 152 QDLNGRPLRINWA 164 (166)
T ss_dssp CEETTEECEEEES
T ss_pred CccCCcEEEEEec
Confidence 9999999999764
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.2e-32 Score=228.69 Aligned_cols=170 Identities=22% Similarity=0.448 Sum_probs=146.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+++|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445678999999999999999999999999999999999999999999999999999999999965 8999999999998
Q ss_pred ecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCC
Q 018159 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (360)
Q Consensus 182 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (360)
++.+.... ..
T Consensus 88 ~~~~~~~~-------------------------------------~~--------------------------------- 97 (196)
T 1l3k_A 88 RAVSREDS-------------------------------------QR--------------------------------- 97 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCcccc-------------------------------------cc---------------------------------
Confidence 87532100 00
Q ss_pred ceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHH
Q 018159 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAV 339 (360)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~ 339 (360)
.......++|||+|||..+|+++|+++|++||.|..|+++.+..+ . +|||||+|.+.++|.+|+
T Consensus 98 --------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 98 --------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp -------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred --------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 000123469999999999999999999999999999999877633 3 899999999999999999
Q ss_pred HhhCCceeCCeeEeEEee
Q 018159 340 KDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 340 ~~lng~~~~G~~l~v~p~ 357 (360)
.. +|..|+|+.|.|.+.
T Consensus 164 ~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp HC-SCCEETTEECEEEEC
T ss_pred Hh-CCcEECCEEEEEEec
Confidence 96 899999999999875
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=4.4e-32 Score=223.59 Aligned_cols=164 Identities=24% Similarity=0.467 Sum_probs=141.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCC--CcceEEEEEecCHHHHHHHHHHhcCCCCC---CcEEE
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIR 179 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~a~v~f~~~~~a~~a~~~l~~~~~~---g~~l~ 179 (360)
+.++|||+|||+++|+++|+++|++||.|.++++++++.+| +++|||||+|.+.++|.+|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999999877 89999999999999999999999987764 34444
Q ss_pred EeecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCC
Q 018159 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (360)
Q Consensus 180 v~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 259 (360)
+.++.+...
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 444331100
Q ss_pred CCceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHH
Q 018159 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338 (360)
Q Consensus 260 ~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A 338 (360)
.....++|||+|||..+|+++|+++|++||.|..|+++.+..+. +|||||+|.+.++|.+|
T Consensus 91 ------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 91 ------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp ------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred ------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 01234689999999999999999999999999999998887666 89999999999999999
Q ss_pred HHhhCCceeC---CeeEeEEee
Q 018159 339 VKDTEKYEID---GKSHLHFPV 357 (360)
Q Consensus 339 ~~~lng~~~~---G~~l~v~p~ 357 (360)
+..|||..+. |++|+|...
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHhcCCcccCCCCCCeEEEec
Confidence 9999998776 499998753
No 8
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=6.9e-31 Score=221.09 Aligned_cols=195 Identities=19% Similarity=0.251 Sum_probs=144.3
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 105 NGSEVFIGGLP-KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nLp-~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
++++|||+||| +.+|+++|+.+|++||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 3799999999999999999999999999999999998
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCce
Q 018159 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
+.... .|..... ..-+. ... ++.... .... |.....+ .
T Consensus 78 ~~~~~-----~p~~~~~-------~~~~~-~~~----~~~~~~-~~~r-----~~~~~~~-------~------------ 115 (205)
T 3tyt_A 78 KQPAI-----MPGQSYG-------LEDGS-CSY----KDFSES-RNNR-----FSTPEQA-------A------------ 115 (205)
T ss_dssp SCSCC-----CCCSCCB-------CTTSC-BSE----EECTTC-TTCS-----CSSHHHH-------T------------
T ss_pred cCCcc-----CCCcccc-------cccCC-ccc----cccCCC-cccc-----ccCcccc-------c------------
Confidence 75432 1110000 00000 000 000000 0000 0000000 0
Q ss_pred eeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCe--eEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018159 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v--~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
......++++|||+|||..+|+++|+++|++||.| ..|++..++++++|||||+|.+.++|.+|+..
T Consensus 116 -----------~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 116 -----------KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp -----------TSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHH
T ss_pred -----------ccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHH
Confidence 00011346799999999999999999999999999 89999887755579999999999999999999
Q ss_pred hCCceeCCe----eEeEEee
Q 018159 342 TEKYEIDGK----SHLHFPV 357 (360)
Q Consensus 342 lng~~~~G~----~l~v~p~ 357 (360)
|||..|.|+ ++.|+.+
T Consensus 185 lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 185 LNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HTTCEECCSSSSSCEECEEE
T ss_pred hCCCCccCCCCCcceEEEec
Confidence 999999988 4666654
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.3e-30 Score=213.05 Aligned_cols=158 Identities=26% Similarity=0.487 Sum_probs=146.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
+++|||+|||+.+|+++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999998999999999999999999999999999999999999999875
Q ss_pred c------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCC
Q 018159 186 K------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (360)
Q Consensus 186 ~------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 259 (360)
. ++|||+|||..+++++|+.+|++||. |..++++++ ..++.++|||||+|.+.++|.+|+..+++.. +.|
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g 157 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK--PSG 157 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCC--CTT
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCC-EeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHhcCCc--cCC
Confidence 4 57999999999999999999999998 999999988 5678899999999999999999999998774 455
Q ss_pred C--Cceeeec
Q 018159 260 N--TPTISWA 267 (360)
Q Consensus 260 ~--~~~v~~~ 267 (360)
+ ++.+.|+
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 4 4677664
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=2.2e-30 Score=220.82 Aligned_cols=167 Identities=23% Similarity=0.431 Sum_probs=151.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+++|+++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999998865
Q ss_pred cc-----------------cceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHH
Q 018159 185 TK-----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (360)
Q Consensus 185 ~~-----------------~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 247 (360)
.. ++|||+|||..+++++|+++|++||. |..++++++ ..++.++|||||+|.+.++|.+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK-IKSATLARD-PTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC-eeEEEEEec-CCCCCcCceEEEEecCHHHHHHHH
Confidence 43 58999999999999999999999998 999999998 567899999999999999999999
Q ss_pred HHHhcCCcccCCCCceeeecCCCCCCCc
Q 018159 248 QKMLNANFKLDGNTPTISWADPKSTPDH 275 (360)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 275 (360)
..+++. .+.|+.+.|.++.+...+..
T Consensus 185 ~~l~g~--~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 185 SSMNLF--DLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HHHTTC--BCSSSBCEEEECSSCSSTTS
T ss_pred HHccCC--EeCCcEEEEEEecCCCCCCC
Confidence 999865 67899999999988765443
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=8e-30 Score=226.42 Aligned_cols=243 Identities=16% Similarity=0.231 Sum_probs=150.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.+..++|||+|||+.+|+++|+ .+|++||.|..|++++ +|+++|||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999977 8999999999999886 58899999999999999999999999999999999
Q ss_pred EEeecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEE--ecChHHHHHHHHHHhcCCcc
Q 018159 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL--YYNNACADYSRQKMLNANFK 256 (360)
Q Consensus 179 ~v~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~--f~~~~~a~~a~~~~~~~~~~ 256 (360)
+|.++............... .......-..... .................+.+.+. ......+..+... ...
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFV-ERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRI----MHH 156 (282)
T ss_pred EEEEeccCcchhhhhcCCcc-cchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccc----ccc
Confidence 99999765432221111100 0000000000000 00000000000000000000000 0000000000000 000
Q ss_pred cCCCCceee--ecCCCCC-----------------------CCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 018159 257 LDGNTPTIS--WADPKST-----------------------PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK 311 (360)
Q Consensus 257 ~~~~~~~v~--~~~~~~~-----------------------~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~ 311 (360)
..|...... ...+... ........++++|||+|||..+++++|+++|++||.|..
T Consensus 157 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~ 236 (282)
T 3pgw_A 157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE 236 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE
Confidence 000000000 0000000 000112235689999999999999999999999999999
Q ss_pred EEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC-CeeEeEEee
Q 018159 312 VVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID-GKSHLHFPV 357 (360)
Q Consensus 312 v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~-G~~l~v~p~ 357 (360)
|+++.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.+.
T Consensus 237 v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 237 VRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred EEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 9998655 589999999999999999999999999 999999764
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=8.2e-31 Score=215.40 Aligned_cols=156 Identities=19% Similarity=0.414 Sum_probs=137.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC----C-------cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 173 (360)
+.++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 7777776 455899999999999999999 8999999
Q ss_pred CCcEEEEeecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcC
Q 018159 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (360)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~ 253 (360)
.|+.|.|.++..... .
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------~------------------------ 91 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------L------------------------ 91 (172)
T ss_dssp TTEECEEECCSSCCC----------------------------------------C------------------------
T ss_pred cCceeeecCCcccCC----------------------------------------C------------------------
Confidence 999999987642110 0
Q ss_pred CcccCCCCceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC-CCC-CCeEEEEeCC
Q 018159 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAE 331 (360)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-kg~afV~F~~ 331 (360)
...++|||+|||..+++++|+++|++||.|..|+++.++ .+. +|||||+|.+
T Consensus 92 --------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 92 --------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp --------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred --------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 004589999999999999999999999999999998875 333 8999999999
Q ss_pred HHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 332 RSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 332 ~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++|.+|+..|||..|+|++|.|.+.
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999874
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.1e-31 Score=219.64 Aligned_cols=163 Identities=22% Similarity=0.354 Sum_probs=139.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+++|+++|+.+|.+||.+.. .++.+..+|+++|||||+|.+.++|.+|+ .|++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 4567899999999999999999999999997766 34455566899999999999999999999 599999999999999
Q ss_pred ecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCC
Q 018159 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (360)
Q Consensus 182 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (360)
++.+...
T Consensus 87 ~~~~~~~------------------------------------------------------------------------- 93 (175)
T 1fje_B 87 KPKGRDS------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCCSSC-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 8864210
Q ss_pred ceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018159 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
......++|||+|||..+++++|+++|++||.|..+ ...+..+|||||+|.+.++|.+|+..
T Consensus 94 ---------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 94 ---------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp ---------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred ---------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 000245699999999999999999999999998877 22223389999999999999999999
Q ss_pred hCCceeCCeeEeEEee
Q 018159 342 TEKYEIDGKSHLHFPV 357 (360)
Q Consensus 342 lng~~~~G~~l~v~p~ 357 (360)
|||..|+|++|.|.+.
T Consensus 156 l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYT 171 (175)
T ss_dssp HTEEEETTEEEEEEEC
T ss_pred hCCCEECCeEEEEEec
Confidence 9999999999999764
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.5e-30 Score=212.73 Aligned_cols=159 Identities=27% Similarity=0.520 Sum_probs=147.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
++++|||+|||+++|+++|+.+|++||.|.+|.+++++.+|+++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999997 4678999999999886
Q ss_pred c------ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccC
Q 018159 185 T------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (360)
Q Consensus 185 ~------~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~ 258 (360)
+ .++|||+|||..+++++|+++|++||. |..++++++ ..++.++|||||.|.+.++|.+|+. + .+..+.
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~ 154 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT-IIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-N--KFIDFK 154 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSC-CSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-C--SEECSS
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCcc-EEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-C--CCEEeC
Confidence 5 468999999999999999999999998 999999988 5678999999999999999999987 4 456889
Q ss_pred CCCceeeecCCC
Q 018159 259 GNTPTISWADPK 270 (360)
Q Consensus 259 ~~~~~v~~~~~~ 270 (360)
|+.+.|.|+.|+
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999875
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=5.2e-30 Score=215.57 Aligned_cols=176 Identities=19% Similarity=0.392 Sum_probs=140.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC----C-------cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 173 (360)
..++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|+ .||+..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 47899999999999999999999999 5 5666665 566899999999999999999 8999999
Q ss_pred CCcEEEEeecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcC
Q 018159 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (360)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~ 253 (360)
.|+.|.|.++.......- . . ...
T Consensus 76 ~g~~i~v~~~~~~~~~~~------~-----------------------~-~~~--------------------------- 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPG------M-----------------------S-ENP--------------------------- 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCC------S-----------------------S-SCS---------------------------
T ss_pred cCceEEEeCCCCCCCCCC------C-----------------------c-CCC---------------------------
Confidence 999999998764321000 0 0 000
Q ss_pred CcccCCCCceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC-CCC-CCeEEEEeCC
Q 018159 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAE 331 (360)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-kg~afV~F~~ 331 (360)
.....+ ..........++|||+|||..+++++|+++|++||.|..|+++.++ .+. +|||||+|.+
T Consensus 99 ~~~~~~-------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~ 165 (198)
T 2yh0_A 99 SVYVPG-------------VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 165 (198)
T ss_dssp SCCCTT-------------SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred cCCCCC-------------CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECC
Confidence 000000 0001112456799999999999999999999999999999998875 333 8999999999
Q ss_pred HHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 332 RSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 332 ~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++|.+|+..|||..|+|++|.|.+.
T Consensus 166 ~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 166 INVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp SSHHHHHHHHHTTCEETTEECEEEES
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 99999999999999999999999864
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=3.4e-29 Score=215.28 Aligned_cols=192 Identities=23% Similarity=0.317 Sum_probs=145.1
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 103 PPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+.+++|||+|||+ .+++++|+++|++||.|..|++++++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45689999999999 99999999999999999999999875 7899999999999999999999999999999999
Q ss_pred ecCcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCC
Q 018159 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (360)
Q Consensus 182 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (360)
++.+..... +..... .....+ .|. .... .+
T Consensus 106 ~a~~~~~~~----~~~~~~------------------------~~~~~~-----~~~-------------~~~~---~~- 135 (229)
T 2adc_A 106 LSKHQNVQL----PREGQE------------------------DQGLTK-----DYG-------------NSPL---HR- 135 (229)
T ss_dssp CCSCCCCCC----CCSSSS------------------------TTTTEE-----ECT-------------TCSS---CC-
T ss_pred EecCccccC----cccccc------------------------cccccc-----ccc-------------cCcc---cc-
Confidence 987543211 110000 000000 000 0000 00
Q ss_pred ceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHH
Q 018159 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (360)
+..+ ..........++++|||+|||..+++++|+++|++|| .|..|++.... +|||||+|.+.++|.+|+.
T Consensus 136 ----~~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 136 ----FKKP-GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp ----CCST-TSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEEESSHHHHHHHHH
T ss_pred ----cCCc-cccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEEECCHHHHHHHHH
Confidence 0000 0000011124568999999999999999999999999 99999995432 4899999999999999999
Q ss_pred hhCCceeC-CeeEeEEee
Q 018159 341 DTEKYEID-GKSHLHFPV 357 (360)
Q Consensus 341 ~lng~~~~-G~~l~v~p~ 357 (360)
.|||..|+ |++|+|...
T Consensus 208 ~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 208 DLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp HHTTCBSSSSCBCEEEEC
T ss_pred HHCCCccCCCCeEEEEEe
Confidence 99999999 999998753
No 17
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.1e-29 Score=205.82 Aligned_cols=161 Identities=25% Similarity=0.481 Sum_probs=143.6
Q ss_pred cccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCcee
Q 018159 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
++++|||+|||+.+++++|+++|+.+|. |..+.++++ ..++.++|||||+|.+.++|..|+..+++ ..+.|+.+.+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTLNG--LRLQTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC-CCCCcceeEEEEEECCHHHHHHHHHHcCC--CccCCceEEE
Confidence 3578999999999999999999999998 999999998 56789999999999999999999999876 4678999999
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhh
Q 018159 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l 342 (360)
.++.+... ....++|+|+|||..+++++|+++|++||.|..++++.+.. +. +|||||+|.+.++|.+|++.|
T Consensus 77 ~~~~~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 77 SYARPSSA------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp EECCCCCG------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EecCCCcc------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Confidence 99887543 24567899999999999999999999999999999987753 33 899999999999999999999
Q ss_pred CCceeCCee--EeEE
Q 018159 343 EKYEIDGKS--HLHF 355 (360)
Q Consensus 343 ng~~~~G~~--l~v~ 355 (360)
||..|.|+. |.|.
T Consensus 151 ~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 151 NGQKPSGATEPITVK 165 (167)
T ss_dssp TTCCCTTCSSCCEEE
T ss_pred cCCccCCCccceEEE
Confidence 999999986 5544
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.9e-29 Score=206.19 Aligned_cols=160 Identities=21% Similarity=0.412 Sum_probs=142.9
Q ss_pred cccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCcee
Q 018159 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (360)
Q Consensus 185 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (360)
+.++|||+|||+.+++++|+++|++||. |..++++++ ..+++++|||||.|.+.++|..|+.. ...+.|+.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT-VTDLKIMKD-PATGRSRGFGFLSFEKPSSVDEVVKT----QHILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC-EEEEECCCC-TTTSSCCSCEEEEESSTHHHHHHHHS----CCEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC-EEEEEEEEC-CCCCCccceEEEEEccHHHHHHHHhc----ccccCCeEccc
Confidence 4678999999999999999999999998 999999988 56889999999999999999999884 35788999988
Q ss_pred eecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhh
Q 018159 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l 342 (360)
.++.+.. ...+.++|||+|||..+++++|+++|++||.|..|+++.++. +. +|||||+|.+.++|.+|++ +
T Consensus 76 ~~~~~~~------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 76 KRAIPRD------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp EECCCHH------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred ccccchh------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 8876542 234567999999999999999999999999999999998754 33 8999999999999999998 8
Q ss_pred CCceeCCeeEeEEee
Q 018159 343 EKYEIDGKSHLHFPV 357 (360)
Q Consensus 343 ng~~~~G~~l~v~p~ 357 (360)
||..|+|++|.|.+.
T Consensus 149 ~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 149 KFIDFKDRKIEIKRA 163 (167)
T ss_dssp SEECSSSSCEEEEEC
T ss_pred CCEEeCCeEEEEeec
Confidence 999999999999874
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=3.3e-29 Score=210.68 Aligned_cols=190 Identities=22% Similarity=0.319 Sum_probs=144.4
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 105 NGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+++|||+|||+ .+++++|+.+|++||.|..|+++.++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998765 789999999999999999999999999999999998
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCce
Q 018159 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (360)
Q Consensus 184 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (360)
.+.... +|.... ...+..+++ .. ... ++
T Consensus 77 ~~~~~~----~~~~~~------------------------~~~~~~~~~-----~~-------------~~~---~r--- 104 (198)
T 1qm9_A 77 KHQNVQ----LPREGQ------------------------EDQGLTKDY-----GN-------------SPL---HR--- 104 (198)
T ss_dssp CCCSCC----CSSSSS------------------------SSSSCEEES-----SC-------------CCT---TS---
T ss_pred cCCCcC----CCCcCC------------------------ccccccccc-----cC-------------Cch---hh---
Confidence 754321 111000 000000100 00 000 00
Q ss_pred eeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 018159 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (360)
+..+. .........++++|||+|||..+++++|+++|++|| .|..|++.... +|||||+|.+.++|.+|+..|
T Consensus 105 --~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 105 --FKKPG-SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp --SSSCC-CCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHH
T ss_pred --ccCcc-ccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHh
Confidence 00000 000111124578999999999999999999999999 99999996532 599999999999999999999
Q ss_pred CCceeC-CeeEeEEee
Q 018159 343 EKYEID-GKSHLHFPV 357 (360)
Q Consensus 343 ng~~~~-G~~l~v~p~ 357 (360)
||..++ |++|+|...
T Consensus 179 ~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 179 HNHDLGENHHLRVSFS 194 (198)
T ss_dssp TSSCCSSCCSCCEEEE
T ss_pred cCCccCCCCeEEEEee
Confidence 999999 999998763
No 20
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=6.1e-29 Score=211.93 Aligned_cols=168 Identities=21% Similarity=0.421 Sum_probs=144.7
Q ss_pred ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceee
Q 018159 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.++|||+|||..+++++|+++|+.||. |..++++++ ..+++++|||||.|.+.++|.+|+..+++. .+.|+.+.+.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~-i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~ 103 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWD-SVTMKHKGFAFVEYEVPEAAQLALEQMNSV--MLGGRNIKVG 103 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSC-EEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHHSSC--CCC-CCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCC-EEEEEEeec-CCCCccCceEEEEeCCHHHHHHHHHHccCC--eeCCeeEEEe
Confidence 468999999999999999999999998 999999988 567889999999999999999999988764 6789999998
Q ss_pred ecCCCCCCCcc-----ccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHH
Q 018159 266 WADPKSTPDHS-----AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKA 338 (360)
Q Consensus 266 ~~~~~~~~~~~-----~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A 338 (360)
++......... ......++|||+|||..+++++|+++|++||.|..|+++.+..+ . +|||||+|.+.++|.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 87665422111 12245689999999999999999999999999999999877533 3 89999999999999999
Q ss_pred HHhhCCceeCCeeEeEEee
Q 018159 339 VKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 339 ~~~lng~~~~G~~l~v~p~ 357 (360)
+..|||..|+|++|.|.+.
T Consensus 184 ~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 184 VSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp HHHHTTCBCSSSBCEEEEC
T ss_pred HHHccCCEeCCcEEEEEEe
Confidence 9999999999999999864
No 21
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=5.5e-28 Score=211.82 Aligned_cols=159 Identities=23% Similarity=0.390 Sum_probs=145.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+++|+++|+.+|++||.|..|.+.+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4568999999999999999999999999999999953 4799999999999999999999999999999999999
Q ss_pred CcccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcc--cCCCC
Q 018159 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNT 261 (360)
Q Consensus 184 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~--~~~~~ 261 (360)
.+.++|||+|||..++.++|+.+|..||. |..+.++.+ .+++++|||||.|.+..+|.+|+..+++..+. ..+++
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~ 170 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGP-VEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP 170 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCC-eEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce
Confidence 99999999999999999999999999998 999999998 47889999999999999999999999765432 34788
Q ss_pred ceeeecCCCC
Q 018159 262 PTISWADPKS 271 (360)
Q Consensus 262 ~~v~~~~~~~ 271 (360)
+.|.++.+..
T Consensus 171 i~v~~~~~~~ 180 (261)
T 3sde_A 171 VIVEPMEQFD 180 (261)
T ss_dssp CEEEECCCEE
T ss_pred EEEeeccccC
Confidence 9998887654
No 22
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=7.9e-28 Score=213.78 Aligned_cols=165 Identities=20% Similarity=0.387 Sum_probs=153.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
.+..++|||+|||+.+|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc---------cceeecCCCCCC-CHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhc
Q 018159 183 SETK---------NRLFIGNVPKNW-TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (360)
Q Consensus 183 ~~~~---------~~l~v~nlp~~~-~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~ 252 (360)
+.+. ++|||+|||..+ ++++|+.+|+.||. |..+++++++ +|.++|+|||.|.+.++|.+|+..+++
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8753 579999999996 99999999999998 9999999974 688999999999999999999999986
Q ss_pred CCcccCCCCceeeecCCCCC
Q 018159 253 ANFKLDGNTPTISWADPKST 272 (360)
Q Consensus 253 ~~~~~~~~~~~v~~~~~~~~ 272 (360)
. .+.|+.+.|.|+.+...
T Consensus 249 ~--~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 249 L--SLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp C--EETTEECEEEECCSSSC
T ss_pred C--ccCCeEEEEEEecCCCc
Confidence 5 56899999999988754
No 23
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=2.1e-27 Score=211.90 Aligned_cols=162 Identities=23% Similarity=0.387 Sum_probs=141.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...++|||+|||+.+|+++|+.+|++|| .|..|.++.++. |.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3678999999999999999999999999 999999998876 88999999999999999999999999999999999998
Q ss_pred cCcc-------------cceeecCCCCC-CCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHH
Q 018159 183 SETK-------------NRLFIGNVPKN-WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248 (360)
Q Consensus 183 ~~~~-------------~~l~v~nlp~~-~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~ 248 (360)
+.+. ++|||+|||.. +++++|+.+|++||. |..+++++++..++.++|||||.|.+.++|.+|+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 7542 67999999999 999999999999998 9999999874435899999999999999999999
Q ss_pred HHhcCCcccCCCCceeeecCCC
Q 018159 249 KMLNANFKLDGNTPTISWADPK 270 (360)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~~~~~ 270 (360)
.+++. .+.|+.+.|.|+.++
T Consensus 272 ~l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GGTTE--EETTEEEEEEECCCC
T ss_pred HhcCC--EECCcEEEEEEecCC
Confidence 88765 678999999999875
No 24
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=4.8e-26 Score=199.48 Aligned_cols=150 Identities=26% Similarity=0.453 Sum_probs=134.7
Q ss_pred ccceeecCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceee
Q 018159 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (360)
Q Consensus 186 ~~~l~v~nlp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (360)
.++|||+|||+.+++++|+.+|++||. |..+.+.+ ++|||||.|.+..+|..|+..+++. .+.|+.+.+.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~-------~kg~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v~ 91 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGE-PSEVFINR-------DRGFGFIRLESRTLAEIAKAELDGT--ILKSRPLRIR 91 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCC-CSEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCC-EEEEEEeC-------CCcEEEEEECCHHHHHHHHHHcCCc--EECCceeEee
Confidence 468999999999999999999999998 99999865 3799999999999999999988765 5689999999
Q ss_pred ecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCC
Q 018159 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng 344 (360)
++.+ .++|||+|||..+|+++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+
T Consensus 92 ~a~~------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 92 FATH------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp ECCC------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eccc------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 9865 4589999999999999999999999999999998886665 89999999999999999999954
Q ss_pred -ceeC---CeeEeEEee
Q 018159 345 -YEID---GKSHLHFPV 357 (360)
Q Consensus 345 -~~~~---G~~l~v~p~ 357 (360)
..+. |++|.|.|.
T Consensus 160 ~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 160 GAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp SCEESSSSCCBCEEEEC
T ss_pred CeEEecCCCceEEEeec
Confidence 4444 999999875
No 25
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=9.8e-22 Score=158.73 Aligned_cols=138 Identities=20% Similarity=0.318 Sum_probs=108.6
Q ss_pred EEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCC-----cccCCCCceeeecCCCCCCCccccccccceEEEcCCC
Q 018159 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-----FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP 291 (360)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp 291 (360)
+.++.+ ..+++|||||+|.+...|.+|+..+++.. ....+.......................++|||+|||
T Consensus 3 ~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 3 YKLILN---GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEE---CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred EEEEec---CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 445554 23689999999999999999998877532 2223333343433333333333344567899999999
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 292 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 99999999999999999999999988643 3 999999999999999999999999999999999875
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.2e-22 Score=154.63 Aligned_cols=97 Identities=23% Similarity=0.440 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+++|++||.|.+|+++++. +.++|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 346789999999999999999999999999999999986 568999999999999999999999999999999999988
Q ss_pred Ccc--------------cceeecCCCCCCCHHH
Q 018159 184 ETK--------------NRLFIGNVPKNWTEDE 202 (360)
Q Consensus 184 ~~~--------------~~l~v~nlp~~~~~~~ 202 (360)
.++ +++||+|||+.+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 653 4699999999998763
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=5e-22 Score=146.73 Aligned_cols=83 Identities=31% Similarity=0.598 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
-.+++|||+|||+++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|+..|||..+.|++|+|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
+|+
T Consensus 97 kPS 99 (99)
T 4fxv_A 97 RPS 99 (99)
T ss_dssp CBC
T ss_pred eCC
Confidence 863
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=139.89 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+++.++|||+|||+.+|+++|+++|++||.|..|.++.++.||+++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8743
No 29
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=4e-20 Score=147.80 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=105.5
Q ss_pred CCCcceEEEEecChHHHHHHHHHH-hcCCcccCCCCceeeecCCCC----------CCCccccccccceEEEcCCCCCCC
Q 018159 227 SRNRGFSFVLYYNNACADYSRQKM-LNANFKLDGNTPTISWADPKS----------TPDHSAAASQVKALYVKNIPDNTS 295 (360)
Q Consensus 227 ~~~~g~~~v~f~~~~~a~~a~~~~-~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~~~~~~l~V~nlp~~~t 295 (360)
...+|+++++|.+.+.|.+|+..+ ++. .+.| .+.+.++.... .........+.++|||+|||..++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~--~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDN--GVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHH--TCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCC--CCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 467899999999999999999998 665 4566 77777765421 112233345678999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 296 TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 296 ~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+++|+++|++||.|..|+|+.+ .+|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 9999999999999999999887 3599999999999999999999999999999999764
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=4.5e-21 Score=139.42 Aligned_cols=82 Identities=35% Similarity=0.566 Sum_probs=76.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHh-cCCCCCCcEEEEeec
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCSLS 183 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~ 183 (360)
+++|||+|||+++|+++|+++|++|| .|.+|++++++.||+++|||||+|.+.++|.+|++.+ ++..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999876 456799999999999
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8754
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=137.72 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCc--EEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCC----CCCCcEE
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK----ELKGKTI 178 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~----~~~g~~l 178 (360)
.=.||||+|||+.+|+++|+++|++||. |.+|++++++.||+++|||||+|.+.++|.+|++.||+. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999995 679999999999999999999999999999999999996 4899999
Q ss_pred EEeecCc
Q 018159 179 RCSLSET 185 (360)
Q Consensus 179 ~v~~~~~ 185 (360)
.|.+|++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 32
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=4.3e-20 Score=140.73 Aligned_cols=105 Identities=19% Similarity=0.331 Sum_probs=96.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+..+++|||+|||+.+|+++|+.+|++||.|..|.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 56699999999999999999999999999999999999
Q ss_pred cCcccceeecCCCCCCCHHHHHHHHHhhCC
Q 018159 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212 (360)
Q Consensus 183 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~ 212 (360)
+.+.... .+++...+++++..+|+++|-
T Consensus 82 a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 9875543 778888899999999999994
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.1e-19 Score=130.47 Aligned_cols=82 Identities=33% Similarity=0.601 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 018159 183 SE 184 (360)
Q Consensus 183 ~~ 184 (360)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.1e-19 Score=128.51 Aligned_cols=81 Identities=27% Similarity=0.540 Sum_probs=77.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
+.+|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 018159 186 K 186 (360)
Q Consensus 186 ~ 186 (360)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=133.96 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=70.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+|+++|+++|++||.|..|+|+.++.++ +|||||+|.++++|.+|+..|||..|+|++|+|.+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999998876543 899999999999999999999999999999999753
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=131.29 Aligned_cols=85 Identities=32% Similarity=0.643 Sum_probs=80.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 97653
No 37
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=130.13 Aligned_cols=83 Identities=31% Similarity=0.525 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
.+.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 38
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=134.69 Aligned_cols=84 Identities=32% Similarity=0.636 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
++..++|||+|||+.+|+++|+.+|++||.|..|.+++++.+|+++|||||+|.+.+.|.+|+..|+|..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9865
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=5.5e-20 Score=133.55 Aligned_cols=80 Identities=31% Similarity=0.559 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCC--cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
.+|||+|||+++|+++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 018159 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 40
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=131.93 Aligned_cols=86 Identities=30% Similarity=0.444 Sum_probs=81.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCcccc
Q 018159 183 SETKNR 188 (360)
Q Consensus 183 ~~~~~~ 188 (360)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987543
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=3.1e-19 Score=131.32 Aligned_cols=84 Identities=32% Similarity=0.678 Sum_probs=80.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
+++|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccce
Q 018159 186 KNRL 189 (360)
Q Consensus 186 ~~~l 189 (360)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 42
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=132.58 Aligned_cols=85 Identities=29% Similarity=0.514 Sum_probs=80.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98653
No 43
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=4.3e-19 Score=131.28 Aligned_cols=85 Identities=32% Similarity=0.478 Sum_probs=80.0
Q ss_pred hcCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEE--------EEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCC
Q 018159 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (360)
Q Consensus 100 ~~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~ 171 (360)
...+...++|||+|||+++|+++|+.+|++||.|.. ++++.++.+|+++|||||+|.+.++|.+|+..|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345667899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeecC
Q 018159 172 ELKGKTIRCSLSE 184 (360)
Q Consensus 172 ~~~g~~l~v~~~~ 184 (360)
.+.|+.|+|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=8.2e-19 Score=141.51 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=108.2
Q ss_pred EEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee-------------------cCcccceeecCCC
Q 018159 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL-------------------SETKNRLFIGNVP 195 (360)
Q Consensus 135 ~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~-------------------~~~~~~l~v~nlp 195 (360)
++.+..+. .+++|||||+|.+.+.|.+|+..+++....+..+.+.. ..+..+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 45566665 36899999999999999999988775332222222111 1224789999999
Q ss_pred CCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCCCC
Q 018159 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273 (360)
Q Consensus 196 ~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~ 273 (360)
+.+++++|+.+|++||. |..++++++ ..+++++|||||.|.+.++|.+|+..|++. .+.|+.+.|.++.+....
T Consensus 80 ~~~~~~~l~~~F~~~G~-v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR-VGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSC-EEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHSTTE--ESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCC-eEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCCC
Confidence 99999999999999998 999999988 568999999999999999999999998764 678999999999887544
No 45
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.6e-19 Score=130.70 Aligned_cols=85 Identities=26% Similarity=0.619 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.....++|||+|||+.+++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+. |++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ecCccc
Q 018159 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 998653
No 46
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=131.06 Aligned_cols=83 Identities=33% Similarity=0.482 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCc
Q 018159 183 SET 185 (360)
Q Consensus 183 ~~~ 185 (360)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 47
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=130.66 Aligned_cols=83 Identities=34% Similarity=0.594 Sum_probs=78.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.++..++|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 018159 182 LSE 184 (360)
Q Consensus 182 ~~~ 184 (360)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.2e-19 Score=130.38 Aligned_cols=84 Identities=26% Similarity=0.596 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98653
No 49
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=8.3e-20 Score=135.26 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC-cE
Q 018159 105 NGSEVFIGGLPK------DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KT 177 (360)
Q Consensus 105 ~~~~i~v~nLp~------~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g-~~ 177 (360)
..++|||+|||+ ++++++|+.+|++||.|.+|++++++.||+++|||||+|.+.++|.+|+..|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeecCcc
Q 018159 178 IRCSLSETK 186 (360)
Q Consensus 178 l~v~~~~~~ 186 (360)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998764
No 50
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=132.70 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..+++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 51
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=132.42 Aligned_cols=86 Identities=33% Similarity=0.488 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCccc
Q 018159 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998754
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=132.87 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=80.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.....++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 99754
No 53
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-19 Score=131.25 Aligned_cols=84 Identities=30% Similarity=0.546 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEE-EEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV-RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...++|||+|||+.+|+++|+.+|++||.|..+ +++.++.+|.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 97643
No 54
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=9.1e-19 Score=133.33 Aligned_cols=85 Identities=34% Similarity=0.576 Sum_probs=80.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98653
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.5e-19 Score=132.02 Aligned_cols=86 Identities=30% Similarity=0.593 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+.+.++|||+|||+.+|+++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccc
Q 018159 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.+..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987643
No 56
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=132.84 Aligned_cols=86 Identities=30% Similarity=0.494 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhc------CCCCCC
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH------SKELKG 175 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~------~~~~~g 175 (360)
.+...++|||+|||+.+|+++|+.+|.+||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cEEEEeecCccc
Q 018159 176 KTIRCSLSETKN 187 (360)
Q Consensus 176 ~~l~v~~~~~~~ 187 (360)
+.|+|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999997653
No 57
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=3e-19 Score=135.84 Aligned_cols=76 Identities=13% Similarity=0.379 Sum_probs=71.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+.+|||+|||..+++++|+++|++||.|.+|+|+.++.+++|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4689999999999999999999999999999999887666999999999999999999999999999999999763
No 58
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-19 Score=128.40 Aligned_cols=82 Identities=28% Similarity=0.556 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cC
Q 018159 183 SE 184 (360)
Q Consensus 183 ~~ 184 (360)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 59
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.4e-19 Score=130.56 Aligned_cols=84 Identities=27% Similarity=0.467 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCC---CCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE---SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
.+.++|||+|||+.+|+++|+.+|++||.|..|.++.++. |++++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6799999999999999999999999999999999999
Q ss_pred eecCccc
Q 018159 181 SLSETKN 187 (360)
Q Consensus 181 ~~~~~~~ 187 (360)
.++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997653
No 60
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1e-18 Score=126.08 Aligned_cols=81 Identities=28% Similarity=0.578 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.....++|||+|||+.+|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999995 58888999999998
Q ss_pred ec
Q 018159 182 LS 183 (360)
Q Consensus 182 ~~ 183 (360)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 61
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-19 Score=132.14 Aligned_cols=85 Identities=32% Similarity=0.576 Sum_probs=80.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97653
No 62
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=131.49 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+++|+++|+.+|++||.|.+|++++++. |+++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999987 9999999999999999999997 8999999999999986
Q ss_pred Cc
Q 018159 184 ET 185 (360)
Q Consensus 184 ~~ 185 (360)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 63
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=7.5e-19 Score=133.78 Aligned_cols=84 Identities=31% Similarity=0.563 Sum_probs=79.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+++++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.++.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8653
No 64
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=128.97 Aligned_cols=75 Identities=19% Similarity=0.369 Sum_probs=68.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhC-CceeCCeeEeEEe
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE-KYEIDGKSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~ln-g~~~~G~~l~v~p 356 (360)
+++|||+|||..+|+++|+++|++|| .|.+|+|+.++.++ +|||||+|.+.++|.+|++.|+ +..++||+|+|..
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 46999999999999999999999999 89999999876543 9999999999999999999874 5689999999964
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=8.8e-19 Score=135.78 Aligned_cols=86 Identities=35% Similarity=0.493 Sum_probs=81.2
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
..+...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcc
Q 018159 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.++.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998764
No 66
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=130.82 Aligned_cols=86 Identities=30% Similarity=0.558 Sum_probs=80.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeC-CCCCCcceEEEEEecCHHHHHHHHHHh-cCCCCCCcEEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v 180 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++.+ +.+|+++|||||+|.+.++|.+|+..| |+..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345789999999999999999999999999999999999 788999999999999999999999999 999999999999
Q ss_pred eecCcccc
Q 018159 181 SLSETKNR 188 (360)
Q Consensus 181 ~~~~~~~~ 188 (360)
.++.+...
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987543
No 67
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=9.9e-19 Score=141.88 Aligned_cols=85 Identities=25% Similarity=0.437 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.....++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|.++|||||+|.+.+.|.+||..||+..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 148 ~a~~~ 152 (165)
T 1rk8_A 148 WCFVK 152 (165)
T ss_dssp ESEEC
T ss_pred EecCC
Confidence 98754
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1e-18 Score=126.65 Aligned_cols=80 Identities=28% Similarity=0.512 Sum_probs=76.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+.+|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999999999999999999999999999 8999999999999999876
Q ss_pred c
Q 018159 186 K 186 (360)
Q Consensus 186 ~ 186 (360)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 69
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=128.42 Aligned_cols=82 Identities=29% Similarity=0.521 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|..|.++.+ +|.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35789999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8653
No 70
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=8.9e-19 Score=132.26 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 754
No 71
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2.5e-18 Score=128.61 Aligned_cols=82 Identities=33% Similarity=0.520 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC---cEEEE
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG---KTIRC 180 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g---~~l~v 180 (360)
...++|||+|||+.+|+++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+..||+..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999998 69999999999999999999999999999988 99999
Q ss_pred eecCcc
Q 018159 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.++.+.
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 999764
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.6e-19 Score=129.71 Aligned_cols=84 Identities=19% Similarity=0.420 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEE-EEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcE----
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF-EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT---- 177 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~---- 177 (360)
....++|||+|||+.+++++|+.+|++||.|. .|.+++++.+|+++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeecCcc
Q 018159 178 IRCSLSETK 186 (360)
Q Consensus 178 l~v~~~~~~ 186 (360)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998764
No 73
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=127.66 Aligned_cols=82 Identities=33% Similarity=0.471 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+++++|+++|++||.|..|.++.++. |+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44578999999999999999999999999999999999986 99999999999999999999999999999999999999
Q ss_pred cCc
Q 018159 183 SET 185 (360)
Q Consensus 183 ~~~ 185 (360)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 74
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.1e-18 Score=128.56 Aligned_cols=82 Identities=23% Similarity=0.501 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++|| |..|.++.++.+|+++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4578999999999999999999999997 999999999999999999999999999999999 89999999999999998
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.+..
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7643
No 75
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=126.18 Aligned_cols=82 Identities=20% Similarity=0.438 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCC-cceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE-SKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..++|||+|||+++|+++|+.+|++||.|..+.++.+..++. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999887766 8999999999999999999999999999999999998
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 76
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=130.38 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=71.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|...
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999998877633 999999999999999999999999999999998753
No 77
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=139.19 Aligned_cols=82 Identities=24% Similarity=0.456 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..++|||+|||+++|+++|+.+|++|| .|..|+++.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 78
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.4e-18 Score=126.81 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=73.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|+|+.++.+.+|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 456899999999999999999999999999999999887777899999999999999999999999999999999864
No 79
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=131.43 Aligned_cols=83 Identities=33% Similarity=0.604 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 83 a~~~ 86 (116)
T 2fy1_A 83 AKKP 86 (116)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9754
No 80
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2.7e-18 Score=125.23 Aligned_cols=83 Identities=25% Similarity=0.442 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+++++|+.+|++||.|..+.++++ +|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999984 689999999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87653
No 81
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.6e-18 Score=129.01 Aligned_cols=83 Identities=27% Similarity=0.377 Sum_probs=78.3
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
......++|||+|||+.+|+++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344568899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eecC
Q 018159 181 SLSE 184 (360)
Q Consensus 181 ~~~~ 184 (360)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 82
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=129.27 Aligned_cols=85 Identities=25% Similarity=0.358 Sum_probs=79.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcc-CCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC-CCCcEEE
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIR 179 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~-~~g~~l~ 179 (360)
.+...++|||+|||+.+|+++|+.+|++ ||.|..|.++.++ +|+++|||||+|.+.++|.+|+..|++.. +.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EeecCccc
Q 018159 180 CSLSETKN 187 (360)
Q Consensus 180 v~~~~~~~ 187 (360)
|.++.++.
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99987543
No 83
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=1.2e-18 Score=130.54 Aligned_cols=85 Identities=29% Similarity=0.592 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCC---CCcEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~---~g~~l~ 179 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|+++.++.+|+++|||||+|.+.++|.+|+..||+..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999887 899999
Q ss_pred EeecCccc
Q 018159 180 CSLSETKN 187 (360)
Q Consensus 180 v~~~~~~~ 187 (360)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997654
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=6.1e-19 Score=123.41 Aligned_cols=75 Identities=32% Similarity=0.675 Sum_probs=72.1
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 108 ~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+|||+|||+++|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+. +++..+.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999997 8999999999999875
No 85
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=124.75 Aligned_cols=78 Identities=24% Similarity=0.289 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC--CCCcEEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~--~~g~~l~v 180 (360)
.+++++|||+|||+.+|+++|+.+|++||.|.++++++ +||||||+|.+.++|.+|+..|++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34678999999999999999999999999999999974 37899999999999999999999876 78999999
Q ss_pred eecCcc
Q 018159 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.+++++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999864
No 86
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.3e-18 Score=133.17 Aligned_cols=82 Identities=30% Similarity=0.545 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+++++++|+.+|++||.|..|+++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 018159 183 SE 184 (360)
Q Consensus 183 ~~ 184 (360)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=128.43 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=70.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
...++|||+|||..+|+++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+. +||..|+|+.|.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 346799999999999999999999999999999999887654 9999999999999999999 899999999999976
No 88
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=129.58 Aligned_cols=83 Identities=31% Similarity=0.670 Sum_probs=78.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35789999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred ccc
Q 018159 185 TKN 187 (360)
Q Consensus 185 ~~~ 187 (360)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 643
No 89
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=131.21 Aligned_cols=84 Identities=30% Similarity=0.502 Sum_probs=79.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEE--------EEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
...++|||+|||+.+|+++|+.+|++||.|. .|+++.++.+|+++|||||+|.+.++|.+|+..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4678999999999999999999999999998 69999999999999999999999999999999999999999
Q ss_pred cEEEEeecCccc
Q 018159 176 KTIRCSLSETKN 187 (360)
Q Consensus 176 ~~l~v~~~~~~~ 187 (360)
+.|+|.++.++.
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999998653
No 90
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.2e-18 Score=126.02 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=73.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....++|||+|||..+++++|+++|++||.|..|+|+.+..+.+|||||+|.+.++|.+|+..|||..|+|+.|+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3556899999999999999999999999999999999887767899999999999999999999999999999999875
No 91
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=124.98 Aligned_cols=77 Identities=25% Similarity=0.324 Sum_probs=72.4
Q ss_pred cccceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...++|||+|||..+++++|+ .+|++||.|..|+|+.++.+ +|||||+|.+.++|.+|+..|||..|+|++|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456799999999999999999 99999999999999988777 8999999999999999999999999999999998
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 86 ~a 87 (96)
T 2dgx_A 86 LA 87 (96)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 92
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=126.57 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=69.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCc----eeCCeeE
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKY----EIDGKSH 352 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~--v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~----~~~G~~l 352 (360)
.-+||||+|||+.+|+++|+++|++||. |..|++++++.++ ||||||+|.++++|.+|++.|||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4579999999999999999999999995 6689999887544 999999999999999999999996 5999999
Q ss_pred eEEee
Q 018159 353 LHFPV 357 (360)
Q Consensus 353 ~v~p~ 357 (360)
.|...
T Consensus 88 ~V~~A 92 (95)
T 2lkz_A 88 GVDFA 92 (95)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 98764
No 93
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=128.37 Aligned_cols=82 Identities=24% Similarity=0.488 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCC-CCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...++|||+|||+.+|+++|+.+|++|| |..|.++.++.+ |+++|||||+|.+.+.|.+|| .|++..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999999988 999999999999999999999 8999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97643
No 94
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=4.1e-18 Score=122.26 Aligned_cols=78 Identities=18% Similarity=0.377 Sum_probs=71.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++.++.+. +|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999998775443 899999999999999999999999999999999864
No 95
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=9e-19 Score=128.55 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..++|||+|||+.+|+++|+.+|.+||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Cc
Q 018159 184 ET 185 (360)
Q Consensus 184 ~~ 185 (360)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 96
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=1.1e-18 Score=148.89 Aligned_cols=82 Identities=29% Similarity=0.546 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..++|||+|||+.+|+++|+.+|++|| .|..|+|++++.+|+++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8753
No 97
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=127.50 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcC--CCCCCcEEE
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (360)
.+...++|||+|||+.+|+++|+.+|++||.|.+|+++++ +|||||+|.+.++|.+|+..|++ ..+.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567899999999999999999999999999999999864 79999999999999999998864 679999999
Q ss_pred EeecCcc
Q 018159 180 CSLSETK 186 (360)
Q Consensus 180 v~~~~~~ 186 (360)
|.+++++
T Consensus 86 V~~A~~~ 92 (105)
T 1sjq_A 86 IQFSNHK 92 (105)
T ss_dssp BCCCSSS
T ss_pred EEEcCCC
Confidence 9999864
No 98
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=129.29 Aligned_cols=82 Identities=23% Similarity=0.482 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCC-CCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
....++|||+|||+++++++|+.+|++|| |..|.++.++ .+|+++|||||+|.+.++|.+|+ .|++..+.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 99
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=129.90 Aligned_cols=84 Identities=26% Similarity=0.524 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87653
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=2.9e-18 Score=132.75 Aligned_cols=84 Identities=25% Similarity=0.489 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 101
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.5e-19 Score=123.36 Aligned_cols=76 Identities=33% Similarity=0.556 Sum_probs=73.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
++|||+|||+++++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..++ ..+.|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999888 9999999999886
No 102
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=128.26 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+++++|+.+|.+||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999998888998899999999999999999999999999999999999999998
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 643
No 103
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=2.5e-18 Score=129.32 Aligned_cols=84 Identities=31% Similarity=0.532 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+.+|+++|+.+|++||.|..|+++.++.+|+++|||||+|.+.++|.+|+..+ +..+.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999865 588999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.++
T Consensus 100 ~a~~~ 104 (109)
T 2rs2_A 100 VAFPR 104 (109)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 98764
No 104
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=128.37 Aligned_cols=84 Identities=29% Similarity=0.457 Sum_probs=77.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCcc
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
++|||+|||+++|+++|+.+|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6899999999999999999999999999999999998653
Q ss_pred ----------------cceeecCCC
Q 018159 187 ----------------NRLFIGNVP 195 (360)
Q Consensus 187 ----------------~~l~v~nlp 195 (360)
.++||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 467888875
No 105
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=126.90 Aligned_cols=81 Identities=23% Similarity=0.305 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCC--CCCCcEEEE
Q 018159 104 PNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRC 180 (360)
Q Consensus 104 ~~~~~i~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~--~~~g~~l~v 180 (360)
.++++|||+|||+ .+|+++|+.+|++||.|.+|+++++ +|||||+|.+.++|.+|+..|++. .+.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999764 579999999999999999999865 489999999
Q ss_pred eecCccccee
Q 018159 181 SLSETKNRLF 190 (360)
Q Consensus 181 ~~~~~~~~l~ 190 (360)
.+++....+.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x4d_A 87 HLSQKYKRIK 96 (102)
T ss_dssp EEECCCTTSS
T ss_pred EECCCCCCCC
Confidence 9998765543
No 106
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=122.52 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=70.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+..|||..|+|+.|+|.+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4567999999999999999999999999999999988753 33 899999999999999999999999999999999874
No 107
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=130.18 Aligned_cols=82 Identities=26% Similarity=0.560 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|..|++++++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4578999999999999999999999999999999999999999999999999999999999999898 899999999998
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.+.
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 653
No 108
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=128.37 Aligned_cols=79 Identities=23% Similarity=0.372 Sum_probs=73.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....++|||+|||..+++++|+.+|++||.|..|.++.++.+.+|||||+|.+.++|.+|+..|||..|+|+.|+|.+.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3567899999999999999999999999999999999887666999999999999999999999999999999999864
No 109
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=122.30 Aligned_cols=78 Identities=19% Similarity=0.367 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++.++.+. +|||||+|.+.++|.+|++.|||..|.|++|+|.+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456899999999999999999999999999999999876533 899999999999999999999999999999999763
No 110
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=8.5e-18 Score=123.51 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=71.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
++++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|+|...
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 35799999999999999999999999999999999876433 899999999999999999999999999999999764
No 111
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=133.84 Aligned_cols=84 Identities=27% Similarity=0.490 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9864
No 112
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=126.45 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+++|+++|+++|++||.+ .|+|+.++ +|+++|||||+|.+.++|.+|| .+|+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 34567899999999999999999999999955 99999998 7999999999999999999999 479999999999998
Q ss_pred ecCc
Q 018159 182 LSET 185 (360)
Q Consensus 182 ~~~~ 185 (360)
++.+
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8764
No 113
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=123.01 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+.+|+++|+++|++| .|..|+++++ .+|+++|||||+|.+.++|.+|+. ||+..+.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 779999999999999999999998 99999999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98754
No 114
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=6.3e-18 Score=118.54 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=66.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+.-|+|+||++.+|+++|+++|.+||+|.++++... ||||||+|.+.++|.+|++.|||..+.||+|+|..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~----kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN----QGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC----CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 568999999999999999999999999999999774 49999999999999999999999999999999864
No 115
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=124.71 Aligned_cols=83 Identities=23% Similarity=0.489 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|.++.++. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 98653
No 116
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=123.87 Aligned_cols=78 Identities=23% Similarity=0.413 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4568999999999999999999999999999999998873 33 899999999999999999999999999999999875
No 117
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=2e-18 Score=134.91 Aligned_cols=117 Identities=19% Similarity=0.307 Sum_probs=74.7
Q ss_pred eEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCCCCCccccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 018159 232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK 311 (360)
Q Consensus 232 ~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~ 311 (360)
+.|++|.+...+..|+..+++.... ++ ....+..+ .......++|||+|||..+++++|+++|++||.|..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~--g~-~~~~~~~~------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM--GR-GSMSYGRP------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 76 (135)
T ss_dssp --------------------------------CCSCCS------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCC--CC-CCCCcCCC------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 5677788888888888887765332 11 11222222 223355789999999999999999999999999999
Q ss_pred EEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 312 VVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 312 v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 9999876433 899999999999999999999999999999999864
No 118
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=2.4e-18 Score=127.38 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=71.6
Q ss_pred ccceEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCC-ee
Q 018159 281 QVKALYVKNIPD------NTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG-KS 351 (360)
Q Consensus 281 ~~~~l~V~nlp~------~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G-~~ 351 (360)
.+++|||+|||. .+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999887643 9999999999999999999999999999 99
Q ss_pred EeEEee
Q 018159 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|+|.+.
T Consensus 85 l~V~~a 90 (100)
T 3ns6_A 85 LFLYTM 90 (100)
T ss_dssp CEEEES
T ss_pred EEEEEC
Confidence 999764
No 119
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.7e-18 Score=125.13 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=67.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC--CceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~~~G~~l~v~p 356 (360)
.+.++|||+|||..+++++|+++|++||.|..|+|+.++ |||||+|.+.++|.+|+..|+ +..|.|++|+|..
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k----GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 456899999999999999999999999999999998864 999999999999999999886 4789999998865
No 120
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=124.46 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=72.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 456899999999999999999999999999999998877655 899999999999999999999999999999999764
No 121
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=8.7e-18 Score=129.64 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+..+++|||+|||+.+++++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCccc
Q 018159 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.+..
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 987644
No 122
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.2e-18 Score=123.13 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=72.5
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..+.++|||+|||..+++++|+++|++||.|..|.++.++.+. +|||||+|.+.++|.+|+..|||..|+|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3567899999999999999999999999999999998776543 89999999999999999999999999999999976
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 92 a 92 (95)
T 2cqc_A 92 P 92 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 123
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=124.87 Aligned_cols=83 Identities=31% Similarity=0.582 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.+.|.+|+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999997 57789999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 97653
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=122.02 Aligned_cols=72 Identities=24% Similarity=0.497 Sum_probs=65.7
Q ss_pred ceEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCe-eEeE
Q 018159 283 KALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK-SHLH 354 (360)
Q Consensus 283 ~~l~V~nlp~~~------t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~-~l~v 354 (360)
++|||+|||..+ ++++|+++|++||.|..|.|++..+..+|||||+|.+.++|.+|+..|||..|+|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 77999999999999999999854434489999999999999999999999999999 8876
No 125
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.9e-18 Score=125.42 Aligned_cols=82 Identities=18% Similarity=0.406 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++.++. .++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34678999999999999999999999999999999999864 4789999999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9764
No 126
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=127.00 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..++|||+|||+.+++++|+.+|.+||.|..|.++.++ +|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999987 4999999999999999999999999999999999999998
Q ss_pred Cc
Q 018159 184 ET 185 (360)
Q Consensus 184 ~~ 185 (360)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 127
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-18 Score=124.57 Aligned_cols=81 Identities=23% Similarity=0.280 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 104 PNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
.+.++|||+|||+.+++++|+ .+|++||.|..|+++.++.+ +|||||+|.+.++|.+|+..||+..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 457899999999999999999 99999999999999998765 88999999999999999999999999999999
Q ss_pred EeecCccc
Q 018159 180 CSLSETKN 187 (360)
Q Consensus 180 v~~~~~~~ 187 (360)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 128
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=7.5e-19 Score=127.62 Aligned_cols=80 Identities=31% Similarity=0.654 Sum_probs=74.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCcc
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (360)
++|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+|.+.+ |.+|+..||+..+.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999998764
Q ss_pred c
Q 018159 187 N 187 (360)
Q Consensus 187 ~ 187 (360)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 129
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=5e-18 Score=119.05 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
.+..|||+||++.+|+++|+.+|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|..|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999964 69999999999999999999999999999999999883
No 130
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.2e-18 Score=126.12 Aligned_cols=81 Identities=31% Similarity=0.383 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEE-EEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE-VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...++|||+|||+.+|+++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|.+||.. ++..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45789999999999999999999999999987 888888 7899999999999999999999986 99999999999988
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 7654
No 131
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=126.10 Aligned_cols=82 Identities=26% Similarity=0.566 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCC--------CC
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--------KG 175 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~--------~g 175 (360)
...++|||+|||+.+|+++|+.+|++||.|..|.++.++ +|.++|||||+|.+.+.|.+|+..||+..+ .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356899999999999999999999999999999999998 899999999999999999999999999999 57
Q ss_pred cEEEEeecCcc
Q 018159 176 KTIRCSLSETK 186 (360)
Q Consensus 176 ~~l~v~~~~~~ 186 (360)
++|.|.++.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999888754
No 132
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=124.02 Aligned_cols=78 Identities=19% Similarity=0.380 Sum_probs=72.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|+|.+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456799999999999999999999999999999998887555 899999999999999999999999999999999764
No 133
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=6.8e-18 Score=122.98 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=66.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce--eCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~--~~G~~l~v~ 355 (360)
.++++|||+|||..+|+++|+++|++||.|.+|++++.+ |||||+|.+.++|.+|+..|||.. +.||+|+|-
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k----g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK----RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 467899999999999999999999999999999998654 999999999999999999999875 889999875
No 134
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=134.62 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEE--EEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCC----CCCCcEE
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK----ELKGKTI 178 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~--~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~----~~~g~~l 178 (360)
..++|||+|||+++|+++|+.+|++||.|.. |++++++.+|+++|||||+|.+. +|.+|+..||+. .+.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 4689999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred EEeecCccc
Q 018159 179 RCSLSETKN 187 (360)
Q Consensus 179 ~v~~~~~~~ 187 (360)
+|.++.+.+
T Consensus 101 ~V~~a~~~~ 109 (131)
T 2m2b_A 101 NVEFAKGSK 109 (131)
T ss_dssp CCEECCCSC
T ss_pred EEEECCCCC
Confidence 999998754
No 135
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1e-17 Score=134.69 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9754
No 136
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=124.82 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=72.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 55789999999999999999999999999999999987643 3 899999999999999999999999999999999864
No 137
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-18 Score=127.96 Aligned_cols=85 Identities=26% Similarity=0.446 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCc-EEEEEEe-eCCCCCCcceEEEEEecCHHHHHHHHHHhc--CCCCCCcEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLM-KDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~--~~~~~g~~l 178 (360)
+.+.++|||+|||+.+|+++|+.+|.+||. |..+.++ .++.+|+++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEeecCccc
Q 018159 179 RCSLSETKN 187 (360)
Q Consensus 179 ~v~~~~~~~ 187 (360)
+|.++.+..
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998654
No 138
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=8.6e-18 Score=119.99 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=69.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+.+|||+|||..+++++|+.+|++||.|..|.++.++.+. +|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 3589999999999999999999999999999998775433 899999999999999999999999999999999864
No 139
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=127.20 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCc-E
Q 018159 105 NGSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-T 177 (360)
Q Consensus 105 ~~~~i~v~nLp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~-~ 177 (360)
..++|||+|||+.+ |+++|+.+|++||.|..|.++ +.+|+++|||||+|.+.++|.+|+..|||..+.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 46799999999999999999999999999999998 9
Q ss_pred EEEeecCcc
Q 018159 178 IRCSLSETK 186 (360)
Q Consensus 178 l~v~~~~~~ 186 (360)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998753
No 140
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=122.43 Aligned_cols=74 Identities=19% Similarity=0.381 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCCC------CHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCc-EE
Q 018159 106 GSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TI 178 (360)
Q Consensus 106 ~~~i~v~nLp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~-~l 178 (360)
+++|||+|||+.+ |+++|+.+|++||.|..+.++ +.+|+++|||||+|.+.++|.+|+..|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999987 46799999999999999999999999999999999 88
Q ss_pred EEe
Q 018159 179 RCS 181 (360)
Q Consensus 179 ~v~ 181 (360)
+|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 141
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=127.06 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HhhccCCcEEEEEEeeCCCCC---CcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 105 NGSEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKESG---ESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~~~---~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
..++|||+|||+.+++++|+ .+|++||.|..|.+++++.++ +++|||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 56899999999999999999 999999999999999887654 566999999999999999999999999999999
Q ss_pred EEeecCcccce
Q 018159 179 RCSLSETKNRL 189 (360)
Q Consensus 179 ~v~~~~~~~~l 189 (360)
+|.++.++...
T Consensus 94 ~V~~a~~k~~~ 104 (111)
T 2cpi_A 94 KASLGTTKYCS 104 (111)
T ss_dssp EEESCCCCSCS
T ss_pred EEEeccccccc
Confidence 99999876543
No 142
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=130.05 Aligned_cols=80 Identities=31% Similarity=0.449 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+.+++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.+.|.+|+ .||+..|.|+.|+|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 579999999999999999999999999999999999999999999999999999999999 8999999999999999865
Q ss_pred c
Q 018159 186 K 186 (360)
Q Consensus 186 ~ 186 (360)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 143
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=124.08 Aligned_cols=79 Identities=22% Similarity=0.415 Sum_probs=72.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..+.++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999998876433 89999999999999999999999999999999987
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 89 a 89 (102)
T 1x5s_A 89 A 89 (102)
T ss_dssp E
T ss_pred C
Confidence 5
No 144
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=124.30 Aligned_cols=79 Identities=19% Similarity=0.383 Sum_probs=72.5
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3567899999999999999999999999999999998875433 89999999999999999999999999999999986
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 89 a 89 (102)
T 2cqb_A 89 A 89 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 145
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=3.8e-18 Score=132.77 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCc---EEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.+...++|||+|||+++|+++|+++|++||. |..|++++++. |+++|||||+|.+.++|.+||. +|+..|.||.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999988 9999999999999999999998 99999999999
Q ss_pred EEeecCc
Q 018159 179 RCSLSET 185 (360)
Q Consensus 179 ~v~~~~~ 185 (360)
.|.++.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998864
No 146
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=122.53 Aligned_cols=78 Identities=21% Similarity=0.450 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++++|||+|||..+++++|+++|++||.|..|.++.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456799999999999999999999999999999998876533 899999999999999999999999999999999875
No 147
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=124.43 Aligned_cols=78 Identities=26% Similarity=0.433 Sum_probs=72.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 456899999999999999999999999999999999876533 899999999999999999999999999999999864
No 148
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=2e-17 Score=124.76 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=72.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|+|++|.|.+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 556899999999999999999999999999999998775433 899999999999999999999999999999999864
No 149
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=8.1e-18 Score=136.47 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=71.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+||..|||..|.|+.|.|.+.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456799999999999999999999999999999998775433 899999999999999999999999999999999875
Q ss_pred e
Q 018159 358 F 358 (360)
Q Consensus 358 ~ 358 (360)
.
T Consensus 150 ~ 150 (165)
T 1rk8_A 150 F 150 (165)
T ss_dssp E
T ss_pred c
Confidence 4
No 150
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=123.71 Aligned_cols=85 Identities=35% Similarity=0.561 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
..+.++|||+|||+.+|+++|+.+|++||.|..|.+.++ +|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346789999999999999999999999999999999743 78999999999999999999999999999999999
Q ss_pred cCcccceeecC
Q 018159 183 SETKNRLFIGN 193 (360)
Q Consensus 183 ~~~~~~l~v~n 193 (360)
+.++..+.+++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99888777764
No 151
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-18 Score=130.22 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcE-EEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
+...++|||+|||+.+|+++|+.+|++||.| ..|+|+.++ +|+++|||||+|.+.++|.+||.. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3467899999999999999999999999999 899999998 899999999999999999999976 9999999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 152
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=3.9e-17 Score=125.97 Aligned_cols=81 Identities=27% Similarity=0.354 Sum_probs=74.2
Q ss_pred cccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 278 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
....+++|||+|||..+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|+|..
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34567899999999999999999999999999999998887554 89999999999999999999999999999999987
Q ss_pred ee
Q 018159 357 VF 358 (360)
Q Consensus 357 ~~ 358 (360)
..
T Consensus 111 a~ 112 (124)
T 2kt5_A 111 VA 112 (124)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 153
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=9.2e-18 Score=132.45 Aligned_cols=81 Identities=33% Similarity=0.604 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..+++++++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 018159 183 S 183 (360)
Q Consensus 183 ~ 183 (360)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 154
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=124.95 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 97643
No 155
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=2.7e-17 Score=131.26 Aligned_cols=117 Identities=15% Similarity=0.263 Sum_probs=106.1
Q ss_pred CCcceEEEEEecCHHHHHHHHHHh-cCCCCCCcEEEEeecCc----------------------ccceeecCCCCCCCHH
Q 018159 145 GESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCSLSET----------------------KNRLFIGNVPKNWTED 201 (360)
Q Consensus 145 ~~~~g~a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~~----------------------~~~l~v~nlp~~~~~~ 201 (360)
...+|+++|+|.+.+.|.+|+..+ |+..+.| .+.+.++.. .++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467999999999999999999999 9999999 999988653 2689999999999999
Q ss_pred HHHHHHHhhCCceeEEEEeeCCCCCCCCcceEEEEecChHHHHHHHHHHhcCCcccCCCCceeeecCCCC
Q 018159 202 EFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271 (360)
Q Consensus 202 ~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~ 271 (360)
+|+.+|++||. |..++++++ ++|||||.|.+.++|.+|+..+++. .+.|+.+.|.|+.+..
T Consensus 89 ~l~~~F~~~G~-i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGP-LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGR--TLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSC-EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSS--CSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCC-EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEcCCCC
Confidence 99999999998 999999875 5899999999999999999999865 5789999999998764
No 156
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=122.16 Aligned_cols=77 Identities=31% Similarity=0.473 Sum_probs=71.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+. |||..|+|+.|.|.+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999876433 8999999999999999999 9999999999999875
No 157
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.6e-18 Score=128.38 Aligned_cols=81 Identities=28% Similarity=0.514 Sum_probs=77.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+.+|+++|+.+|.+||.|..|.++.++.+|+++|||||+|.+.+.|.+||.. ++..|.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 58899999999999999999999999999999999999999999999999999999999986 99999999999999986
Q ss_pred cc
Q 018159 186 KN 187 (360)
Q Consensus 186 ~~ 187 (360)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 158
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=123.31 Aligned_cols=79 Identities=27% Similarity=0.479 Sum_probs=72.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCC-C-CCC-CCeEEEEeCCHHHHHHHHHhh-CCceeCCeeEeE
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-K-SGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGKSHLH 354 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-~-~~~-kg~afV~F~~~~~A~~A~~~l-ng~~~~G~~l~v 354 (360)
....++|||+|||..+++++|+++|++||.|..|+|+.+ + .+. +|||||+|.+.++|.+|+..| ||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 356789999999999999999999999999999999987 3 233 899999999999999999999 999999999999
Q ss_pred Eee
Q 018159 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
.+.
T Consensus 92 ~~a 94 (107)
T 2cph_A 92 EWA 94 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 159
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8e-18 Score=126.58 Aligned_cols=82 Identities=23% Similarity=0.499 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|++||.|..|.++.++ +.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999885 56899999999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 160
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=128.35 Aligned_cols=82 Identities=21% Similarity=0.411 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
..+.++|||+|||+.+++++|+ .+|++||.|..|.+.. +|+++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999988754 58899999999999999999999999999999999
Q ss_pred EEeecCccc
Q 018159 179 RCSLSETKN 187 (360)
Q Consensus 179 ~v~~~~~~~ 187 (360)
+|.++..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998654
No 161
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=5.3e-18 Score=129.42 Aligned_cols=81 Identities=26% Similarity=0.309 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCc---EEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
+...++|||+|||+++|+++|+.+|++||. |..|+++.++. |+++|||||+|.+.++|.+||. +|+..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999998 89999999987 9999999999999999999998 999999999999
Q ss_pred EeecCc
Q 018159 180 CSLSET 185 (360)
Q Consensus 180 v~~~~~ 185 (360)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998753
No 162
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=2.7e-18 Score=134.25 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.+.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 163
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.3e-18 Score=125.56 Aligned_cols=84 Identities=26% Similarity=0.429 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcC--CCCCCcEEE
Q 018159 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (360)
..++++|||+|||++ +|+++|+.+|++||.|.+|++++ ++|||||+|.+.++|.+|+..|++ ..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999964 479999999999999999998864 569999999
Q ss_pred EeecCcccceeec
Q 018159 180 CSLSETKNRLFIG 192 (360)
Q Consensus 180 v~~~~~~~~l~v~ 192 (360)
|.+++.+..+..+
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999887776554
No 164
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1e-17 Score=129.29 Aligned_cols=80 Identities=23% Similarity=0.486 Sum_probs=76.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+++|+++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999989999999999999999999999 7999999999999999875
Q ss_pred c
Q 018159 186 K 186 (360)
Q Consensus 186 ~ 186 (360)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=122.43 Aligned_cols=78 Identities=10% Similarity=0.198 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.++++|||+|||..+++++|+.+|++||.|..| +|+.++.. . +|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999 88887433 3 89999999999999999999999999999999987
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 83 a 83 (96)
T 1x5t_A 83 A 83 (96)
T ss_dssp S
T ss_pred e
Confidence 4
No 166
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=119.89 Aligned_cols=77 Identities=19% Similarity=0.399 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC---CCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG---KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~---~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+++++|+.+|++||.|..|.|+.+..+ .+|||||+|.+.++|.+|+..|||..|+|+.|+|.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3579999999999999999999999999999999877642 3799999999999999999999999999999999875
No 167
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=121.31 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhc--CCCCCCcEEEEe
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~--~~~~~g~~l~v~ 181 (360)
+++++|||+|||+.+|+++|+.+|++||.|..|.++++ +|||||+|.+.++|.+|+..|+ +..+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45789999999999999999999999999999998764 7899999999999999999775 567999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.++
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99754
No 168
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=124.47 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..+++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456899999999999999999999999999999998776533 899999999999999999999999999999999864
No 169
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-17 Score=123.51 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhC------CceeCCee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE------KYEIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~ln------g~~~~G~~ 351 (360)
.+.++|||+|||..+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999876533 8999999999999999999999 99999999
Q ss_pred EeEEee
Q 018159 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|+|.+.
T Consensus 93 l~v~~a 98 (111)
T 1x4h_A 93 LKVDLA 98 (111)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999864
No 170
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=125.34 Aligned_cols=78 Identities=27% Similarity=0.403 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcC--CCCCCcEEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~--~~~~g~~l~v 180 (360)
.+++++|||+|||+++|+++|+.+|++||.|..|+++++ +|||||+|.+.++|.+|+..|++ ..+.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346789999999999999999999999999999999864 79999999999999999998874 6899999999
Q ss_pred eecCcc
Q 018159 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.++.++
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 999764
No 171
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=123.21 Aligned_cols=76 Identities=12% Similarity=0.238 Sum_probs=70.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....+|||+|||+.+++++|+++|++| .|..|+|+.++.++ +|||||+|.+.++|.+|+ .|||..|+||.|.|.+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 446799999999999999999999999 89999999887766 999999999999999999 59999999999999875
No 172
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=124.07 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=69.8
Q ss_pred cccceEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCe-eE
Q 018159 280 SQVKALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK-SH 352 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~------t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~-~l 352 (360)
...++|||+|||..+ ++++|+.+|++||.|..|.|+...+..+|||||+|.+.++|.+|+..|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346799999999999 78999999999999999999843333489999999999999999999999999998 99
Q ss_pred eEEee
Q 018159 353 LHFPV 357 (360)
Q Consensus 353 ~v~p~ 357 (360)
+|...
T Consensus 93 ~V~~a 97 (105)
T 2nlw_A 93 RVNLF 97 (105)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 98764
No 173
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.5e-17 Score=120.09 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+..++|||+|||+.+++++|+.+|++| .|..+.+. +++|||||+|.+.++|.+|+..||+..+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 67999999999999999999999999999999999999
Q ss_pred CcccceeecCC
Q 018159 184 ETKNRLFIGNV 194 (360)
Q Consensus 184 ~~~~~l~v~nl 194 (360)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 98888887774
No 174
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=3.2e-18 Score=124.16 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=67.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+|||+|||..+++++|+++|++|| .|..|+++.++.+ . +|||||+|.+.++|.+|+..|||..|+|+.|+|.+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999887643 3 899999999999999999999999999999999764
No 175
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=123.82 Aligned_cols=78 Identities=19% Similarity=0.379 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 55789999999999999999999999999999999887543 3 899999999999999999999999999999999864
No 176
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=2.9e-17 Score=124.97 Aligned_cols=78 Identities=19% Similarity=0.332 Sum_probs=71.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|+|+.++. +. +|||||+|.+.++|.+|+..|||..|+|+.|+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5578999999999999999999999999999999988753 33 899999999999999999999999999999999874
No 177
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=2.1e-17 Score=123.63 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=72.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCC---eeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDG---KSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G---~~l~v~ 355 (360)
...++|||+|||..+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 457899999999999999999999999999999999887655 8999999999999999999999999998 999997
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 93 ~a 94 (105)
T 2dnh_A 93 FA 94 (105)
T ss_dssp ES
T ss_pred EC
Confidence 64
No 178
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-17 Score=122.20 Aligned_cols=77 Identities=21% Similarity=0.380 Sum_probs=70.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.... .+|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4568999999999999999999999999999999976532 4799999999999999999999999999999999764
No 179
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=122.47 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=71.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
.+.++|||+|||..+++++|+++|++||.|.. |+++.++.+ . +|||||+|.+.++|.+|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 55789999999999999999999999999999 998877543 3 8999999999999999999999999999
Q ss_pred eeEeEEee
Q 018159 350 KSHLHFPV 357 (360)
Q Consensus 350 ~~l~v~p~ 357 (360)
++|+|...
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999764
No 180
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=121.81 Aligned_cols=78 Identities=24% Similarity=0.271 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCC--CCCCcEEEEe
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~--~~~g~~l~v~ 181 (360)
++.++|||+|||+.+++++|+.+|++||.|..|.++++ +|||||+|.+.++|.+|+..|++. .+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999998753 789999999999999999988764 4999999999
Q ss_pred ecCccc
Q 018159 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.++.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998643
No 181
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-18 Score=131.56 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+.+|.+||.|..+.++.+..+|+++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467899999999999999999999999999887777777789999999999999999999998 999999999999999
Q ss_pred cCc
Q 018159 183 SET 185 (360)
Q Consensus 183 ~~~ 185 (360)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 182
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=1.1e-17 Score=121.85 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=71.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+......+|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999998753334899999999999999999999999999999998764
No 183
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=124.60 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=71.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999998775443 899999999999999999999999999999999864
No 184
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=122.62 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=67.7
Q ss_pred cccceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc--eeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY--EIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~--~~~G~~l~v~p 356 (360)
.++++|||+|||. .+++++|+.+|++||.|.+|+|++++ |||||+|.+.++|.+|+..||+. .|.||+|+|..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 4578999999999 99999999999999999999998765 89999999999999999999864 59999999875
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 89 a 89 (102)
T 1x4d_A 89 S 89 (102)
T ss_dssp E
T ss_pred C
Confidence 4
No 185
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=2.7e-18 Score=120.08 Aligned_cols=75 Identities=25% Similarity=0.539 Sum_probs=71.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 108 ~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
+|||+|||+++|+++|+.+|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+. +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999997 5899999999999875
No 186
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=122.49 Aligned_cols=81 Identities=28% Similarity=0.524 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+.+|++||.| .++.+ .+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4468999999999999999999999999987 45555 5799999999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 97653
No 187
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.4e-17 Score=123.66 Aligned_cols=78 Identities=27% Similarity=0.364 Sum_probs=72.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|...
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 557899999999999999999999999999999998877555 899999999999999999999999999999999864
No 188
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=3.4e-17 Score=122.67 Aligned_cols=78 Identities=23% Similarity=0.397 Sum_probs=71.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCcee---CCeeEeE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEI---DGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~---~G~~l~v 354 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..+ .|++|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 456899999999999999999999999999999999876533 89999999999999999999999988 8999999
Q ss_pred Eee
Q 018159 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
.+.
T Consensus 91 ~~a 93 (106)
T 2dgp_A 91 KPA 93 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 875
No 189
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-17 Score=123.54 Aligned_cols=77 Identities=10% Similarity=0.287 Sum_probs=71.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+ .|||..|+|+.|.|.+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 456899999999999999999999999999999999877533 899999999999999999 89999999999999864
No 190
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8.1e-18 Score=125.85 Aligned_cols=77 Identities=26% Similarity=0.339 Sum_probs=72.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+.+|+++|+++|++| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+|+..|.||.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999876 999999999999999999999 6899999999999988864
No 191
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=120.03 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=67.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC--CceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln--g~~~~G~~l~v~p~ 357 (360)
.++++|||+|||..+++++|+.+|++||.|..|+|+.+ ||||||+|.+.++|.+|+..|+ +..+.|++|.|...
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 46789999999999999999999999999999999876 4999999999999999999874 67899999998653
No 192
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=3.2e-17 Score=122.84 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=68.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||+.+++++|+++|++|| .|..+.++... .+|||||+|.+.++|.+|+..|||..|+|++|.|.+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~--~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD--FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS--SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC--CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 357999999999999999999999999 89999997542 4699999999999999999999999999999999763
No 193
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.6e-17 Score=121.34 Aligned_cols=83 Identities=24% Similarity=0.458 Sum_probs=75.3
Q ss_pred hhhhcCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCc
Q 018159 97 AQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (360)
Q Consensus 97 ~~~~~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~ 176 (360)
......+...++|||+|||+.+++++|+.+|++||.|..+++. +++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 18 ~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 18 HIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp HHHTTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred hhhhcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3344556678999999999999999999999999999999997 4589999999999999999999999999999
Q ss_pred EEEEeecCc
Q 018159 177 TIRCSLSET 185 (360)
Q Consensus 177 ~l~v~~~~~ 185 (360)
.|+|.++++
T Consensus 92 ~l~V~~a~~ 100 (101)
T 2la4_A 92 NLRTGWGKE 100 (101)
T ss_dssp ECCCCBCCC
T ss_pred EEEEEeccC
Confidence 999999875
No 194
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=125.40 Aligned_cols=78 Identities=23% Similarity=0.449 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345799999999999999999999999999999999887554 899999999999999999999999999999999764
No 195
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=123.47 Aligned_cols=78 Identities=26% Similarity=0.399 Sum_probs=71.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-----CCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-----GKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-----~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++. ..+|||||+|.+.++|.+|+..|||..|.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3467999999999999999999999999999999987654 22899999999999999999999999999999999
Q ss_pred Eee
Q 018159 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
.+.
T Consensus 83 ~~a 85 (98)
T 2cpf_A 83 RIS 85 (98)
T ss_dssp ECS
T ss_pred EEc
Confidence 864
No 196
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=2.7e-17 Score=125.10 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=71.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999887643 3 899999999999999999999999999999999764
No 197
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=118.00 Aligned_cols=77 Identities=35% Similarity=0.628 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+++|+++|+.+|++||.|..+.++ +|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999997 57999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.+..
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 97653
No 198
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=123.20 Aligned_cols=77 Identities=27% Similarity=0.440 Sum_probs=71.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.+ .+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46789999999999999999999999999999999887 444 899999999999999999999999999999999864
No 199
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=2.4e-17 Score=119.29 Aligned_cols=76 Identities=20% Similarity=0.447 Sum_probs=69.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+++++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+ .|||..|.|++|+|.+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 457999999999999999999999999999999987753 33 899999999999999999 89999999999999874
No 200
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=123.25 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=69.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+..
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG----GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS----SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34679999999999999999999999999999999864 4899999999999999999999999999999998753
No 201
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-18 Score=127.27 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCc---EEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
+...++|||+|||+++|+++|+.+|++||. |..|+++.++. |+++|||||+|.+.++|.+||. +++..+.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 446789999999999999999999999998 89999999987 9999999999999999999998 999999999999
Q ss_pred EeecCc
Q 018159 180 CSLSET 185 (360)
Q Consensus 180 v~~~~~ 185 (360)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998864
No 202
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.5e-17 Score=116.30 Aligned_cols=72 Identities=24% Similarity=0.401 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+|||+|||..+++++|+++|++||.|..|.++.++.+ . +|||||+|.+.++|.+|+. |||..|+|++|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 5899999999999999999999999999999887643 3 8999999999999999998 999999999999976
No 203
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=120.95 Aligned_cols=82 Identities=32% Similarity=0.573 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+|+++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999885 677888888899999999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98653
No 204
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=4.4e-17 Score=124.54 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=71.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45689999999999999999999999999999999887543 3 899999999999999999999999999999999763
No 205
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=123.53 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=72.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|...
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 456899999999999999999999999999999998877655 899999999999999999999999999999999754
No 206
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=3.8e-17 Score=117.71 Aligned_cols=76 Identities=22% Similarity=0.425 Sum_probs=69.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+.++|||+|||..+++++|+++|++||.|..|+++.++.+ . +|||||+|.+.++|.+|+. +++..|+|+.|.|.+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 45679999999999999999999999999999999877643 3 8999999999999999997 588899999999975
No 207
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.8e-17 Score=120.51 Aligned_cols=76 Identities=22% Similarity=0.391 Sum_probs=70.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC--C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~--~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+.++|||+|||..+++++|+.+|++|| |..|.|+.++.+ . +|||||+|.+.++|.+|+ .|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999988753 3 899999999999999999 8999999999999986
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 91 a 91 (104)
T 1wi8_A 91 A 91 (104)
T ss_dssp C
T ss_pred c
Confidence 4
No 208
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=2.5e-17 Score=127.53 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|+|++|.|.+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 557899999999999999999999999999999998876533 899999999999999999999999999999999764
No 209
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.9e-18 Score=121.05 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=70.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 456799999999999999999999999999999998875433 89999999999999999999999999999998753
No 210
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=123.14 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=68.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCC--CCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~--~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
....++|||+|||..+++++|+++|++|| |..|+|+.++ .+. +|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35578999999999999999999999999 9999999876 333 999999999999999999 899999999999987
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 94 ~a 95 (100)
T 2j76_E 94 VA 95 (100)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 211
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.6e-17 Score=122.35 Aligned_cols=82 Identities=18% Similarity=0.391 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
.+++++|||+|||+.+++++|+ .+|++||.|..|.+.. +|.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4568999999999999999999 9999999999998874 47889999999999999999999999999999999
Q ss_pred EEeecCccc
Q 018159 179 RCSLSETKN 187 (360)
Q Consensus 179 ~v~~~~~~~ 187 (360)
+|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 212
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.2e-17 Score=119.13 Aligned_cols=79 Identities=18% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCC--CcEEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--GKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~--g~~l~v 180 (360)
+...++|||+|||+.+|+++|+.+|++||.|..|.+..+ +|||||+|.+.++|.+|+..||+..+. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345789999999999999999999999999999998753 789999999999999999999999999 999999
Q ss_pred eecCccc
Q 018159 181 SLSETKN 187 (360)
Q Consensus 181 ~~~~~~~ 187 (360)
.++.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998653
No 213
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=116.46 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=69.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhh-CCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l-ng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++.. +|||||+|.+.++|.+|+..| ||..++|++|+|.+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 45689999999999999999999999999999999875 499999999999999999999 999999999999763
No 214
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=117.05 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=69.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
++|||+|||..+++++|+++|++||.|..|.++.++.+. +|||||+|.+.++|.+|+..+| ..++|++|.|.+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 479999999999999999999999999999998876433 8999999999999999999999 99999999998753
No 215
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=123.94 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||+.+++++|+++|++||.| ..|+|+.++.+. +|||||+|.+.++|.+||.. ||..|+|+.|.|.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456899999999999999999999999999 889998887655 99999999999999999997 999999999999875
No 216
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=120.90 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=67.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCc--eeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY--EIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~--~~~G~~l~v~p~ 357 (360)
.++++|||+|||..+++++|+.+|++||.|..|+|+++ ||||||+|.+.++|.+|+..||+. .|.|++|+|...
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45789999999999999999999999999999999875 499999999999999999998764 599999998653
No 217
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.3e-17 Score=122.66 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
...++|||+|||..+++++|+++|++||.|. .|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4578999999999999999999999999999 6999887543 3 8999999999999999999999999999
Q ss_pred eeEeEEee
Q 018159 350 KSHLHFPV 357 (360)
Q Consensus 350 ~~l~v~p~ 357 (360)
++|+|.+.
T Consensus 93 ~~l~V~~a 100 (113)
T 2cpe_A 93 SKLKVSLA 100 (113)
T ss_dssp EECEEECS
T ss_pred CEEEEEEC
Confidence 99999764
No 218
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9e-17 Score=122.37 Aligned_cols=77 Identities=23% Similarity=0.483 Sum_probs=71.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..||+ .|.|++|+|.+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 457899999999999999999999999999999999886533 89999999999999999999999 899999999875
No 219
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-18 Score=127.71 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|.. .++.+..+|+++|||||+|.+.++|.+|++ ||+..+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999877 667777789999999999999999999998 9999999999999998
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 220
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.5e-17 Score=120.92 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=70.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||+.+++++|+++|++||.|.. |+|+.+..+. +|||||+|.+.++|.+|+.. |+..|+||.|.|.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45679999999999999999999999999987 8888776555 99999999999999999997 999999999999775
No 221
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=5.4e-17 Score=124.78 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=68.3
Q ss_pred cccceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++++|||+|||..+++++|+ .+|++||.|..|.++.. ...+|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 457899999999999999876 69999999999988652 2338999999999999999999999999999999987
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 106 ~a 107 (127)
T 2a3j_A 106 FS 107 (127)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 222
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=7.7e-17 Score=118.42 Aligned_cols=78 Identities=26% Similarity=0.463 Sum_probs=71.3
Q ss_pred cCCCCCCEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 101 ALPPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
..++..++|||+|||+ .+++++|+.+|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456789999999998 99999999999999999999983 78999999999999999999999999999999
Q ss_pred EeecCcc
Q 018159 180 CSLSETK 186 (360)
Q Consensus 180 v~~~~~~ 186 (360)
|.++.++
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998764
No 223
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=6.3e-18 Score=157.46 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=71.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+|+++|..+|++||.|..|.|+.++.+. +|||||+|.+.++|.+||..|||..|+|+.|.|.+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999998875433 899999999999999999999999999999999865
No 224
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.3e-17 Score=121.78 Aligned_cols=81 Identities=25% Similarity=0.609 Sum_probs=75.1
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
..+...++|||+|||+.+|+++|+.+|++||.|..|.++.+ +|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999875 789999999999999999999999999999999
Q ss_pred eecCccc
Q 018159 181 SLSETKN 187 (360)
Q Consensus 181 ~~~~~~~ 187 (360)
.++.+..
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4g_A 94 YWGKESP 100 (109)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9998754
No 225
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=126.00 Aligned_cols=78 Identities=19% Similarity=0.387 Sum_probs=71.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..+.++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|+|++|+|..
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3567899999999999999999999999999999998875433 89999999999999999999999999999999875
No 226
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=113.85 Aligned_cols=80 Identities=20% Similarity=0.372 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHH----HHHhhccCC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 104 PNGSEVFIGGLPKDASEED----LRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~----l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
+..++|||+|||+.++.++ |+.+|.+|| .|.+| +| |+|||.|.+.++|.+|++.|+|..+.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3344499999999999988 558999995 99888 34 999999999999999999999999999999
Q ss_pred EEeecCcccceeecC
Q 018159 179 RCSLSETKNRLFIGN 193 (360)
Q Consensus 179 ~v~~~~~~~~l~v~n 193 (360)
+|.+|+.++.++...
T Consensus 77 ~v~~A~~~sd~~~~~ 91 (96)
T 2diu_A 77 IVSFTPKNRELCETS 91 (96)
T ss_dssp EEESSCCSCCCCCCC
T ss_pred EEEecCCCcceeEec
Confidence 999999888776543
No 227
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=123.59 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=67.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC--ceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng--~~~~G~~l~v~p~ 357 (360)
.++++|||+|||+.+++++|+++|++||.|..|+|+.+ ||||||+|.+.++|.+|+..|++ ..|.|++|+|...
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 45689999999999999999999999999999999876 49999999999999999999984 6899999998753
No 228
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=123.60 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=71.1
Q ss_pred cccceEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEcCCCCCC-----CCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018159 280 SQVKALYVKNIPDNTSTEKIK---ELFQRHGEVTKVVMPPGKSG-----KRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~---~~f~~~G~v~~v~i~~~~~~-----~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
...++|||+|||..+++++|+ ++|++||.|..|.|+.++.+ .+|||||+|.+.++|.+|+..|||..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346799999999999999999 99999999999999877652 2689999999999999999999999999999
Q ss_pred EeEEee
Q 018159 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|+|.+.
T Consensus 93 l~V~~a 98 (111)
T 2cpi_A 93 LKASLG 98 (111)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 999764
No 229
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.7e-17 Score=120.83 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=70.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCee-EEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCee----E
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKS----H 352 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~----l 352 (360)
..+++|||+|||..+++++|+++|++||.|. .|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 99998876433 899999999999999999999999999999 7
Q ss_pred eEEe
Q 018159 353 LHFP 356 (360)
Q Consensus 353 ~v~p 356 (360)
+|.+
T Consensus 87 ~v~~ 90 (99)
T 2div_A 87 KLNY 90 (99)
T ss_dssp CEEE
T ss_pred EEee
Confidence 7765
No 230
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=117.24 Aligned_cols=72 Identities=22% Similarity=0.533 Sum_probs=67.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456899999999999999999999999999999998 389999999999999999999999999999999864
No 231
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=122.45 Aligned_cols=78 Identities=12% Similarity=0.239 Sum_probs=72.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCce-eCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~-~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~-~~G~~l~v~p 356 (360)
.+.++|||+|||..+++++|+.+|++ ||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||.. |+|++|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45689999999999999999999999 9999999998887555 8999999999999999999999999 9999999876
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 87 a 87 (104)
T 2dhg_A 87 A 87 (104)
T ss_dssp C
T ss_pred c
Confidence 4
No 232
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=3.4e-17 Score=124.93 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=71.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.++.+. +|||||+|.+.++|.+|+. |||..|+||.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45679999999999999999999999999 8999998877766 9999999999999999999 99999999999998
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 94 ~a 95 (118)
T 2db1_A 94 KS 95 (118)
T ss_dssp EE
T ss_pred EC
Confidence 75
No 233
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6e-17 Score=119.68 Aligned_cols=74 Identities=27% Similarity=0.447 Sum_probs=69.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+.+|++||.|..|+++..+ |||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k----g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK----GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT----TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC----CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 556899999999999999999999999999999998764 99999999999999999999999999999999764
No 234
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=116.30 Aligned_cols=76 Identities=18% Similarity=0.410 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHh-cCCCCCCcEEEEe
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l-~~~~~~g~~l~v~ 181 (360)
....++|||+|||+.+|+++|+.+|++||.|..+.+++ ++|||||+|.+.++|.+|+..| ++..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34678999999999999999999999999999999986 3789999999999999999988 9999999999999
Q ss_pred ecC
Q 018159 182 LSE 184 (360)
Q Consensus 182 ~~~ 184 (360)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 235
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2.3e-17 Score=123.61 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=72.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
..++..++|||+|||+++|+++|+++|++|| .|..+.+.. +.++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4566788999999999999999999999999 899998853 35799999999999999999999999999999999
Q ss_pred EeecCc
Q 018159 180 CSLSET 185 (360)
Q Consensus 180 v~~~~~ 185 (360)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999864
No 236
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.1e-17 Score=117.30 Aligned_cols=76 Identities=12% Similarity=0.269 Sum_probs=70.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++| .|..|+|+.+..+. +|||||+|.+.++|.+|+. |||..|+|+.|.|.+.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 456799999999999999999999999 89999998886555 8999999999999999999 9999999999999875
No 237
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=1.1e-16 Score=117.50 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=67.9
Q ss_pred ccccceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 279 ASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 279 ~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++++|||+|||. .+++++|+.+|++||.|..|++. +|||||+|.+.++|.+|+..|||..++|++|+|.+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 35678999999998 99999999999999999999994 489999999999999999999999999999999764
No 238
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=7.1e-17 Score=120.19 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=69.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++|| |..|+|+.++.+. +|||||+|.+.++|.+|+ .|||..|.|+.|+|.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999997 9999998876533 899999999999999999 89999999999999864
No 239
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=120.85 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC-----cE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-----KT 177 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g-----~~ 177 (360)
+...++|||+|||+++|+++|+.+|++||.|..|.++.+ |||||+|.+.++|.+||..||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346789999999999999999999999999999999875 899999999999999999999999999 99
Q ss_pred EEEeecCccc
Q 018159 178 IRCSLSETKN 187 (360)
Q Consensus 178 l~v~~~~~~~ 187 (360)
|+|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998653
No 240
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=123.06 Aligned_cols=78 Identities=22% Similarity=0.468 Sum_probs=71.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.++.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|+|.+.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 456899999999999999999999999999999998775433 899999999999999999999999999999999864
No 241
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=126.64 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcE----EEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
....++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+||.. |+..|.||.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999975 689999884 799999999999999999999975 9999999999
Q ss_pred EEeecC
Q 018159 179 RCSLSE 184 (360)
Q Consensus 179 ~v~~~~ 184 (360)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 998764
No 242
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=129.67 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=70.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..++|||+|||..+++++|+++|++|| .|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999998775433 89999999999999999999999999999999987
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 5
No 243
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=9.7e-17 Score=124.11 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=71.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45679999999999999999999999999999999877533 3 899999999999999999999999999999999865
No 244
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=119.35 Aligned_cols=79 Identities=28% Similarity=0.485 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|. +.++. ++++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999996 66654 477999999999999999999999999999999999999
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 245
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-17 Score=127.48 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|..+.+..+..+|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45789999999999999999999999999843322222226899999999999999999999999999999999999999
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.+..
T Consensus 103 ~~~~ 106 (115)
T 2cpx_A 103 KNKK 106 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
No 246
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=1e-16 Score=121.85 Aligned_cols=77 Identities=16% Similarity=0.362 Sum_probs=70.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++++|||+|||..+++++|+.+|++||.|..|.|+.+.. .+|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4467999999999999999999999999999999986543 2799999999999999999999999999999999764
No 247
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=116.64 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=69.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC--CeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID--GKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~--G~~l~v~p~ 357 (360)
.++++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|||..|. |++|+|.+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 44679999999999999999999999999999999876 489999999999999999999999999 999999764
No 248
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=1.3e-16 Score=119.82 Aligned_cols=78 Identities=22% Similarity=0.406 Sum_probs=69.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..+ |..|+|+.|.|.+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 45689999999999999999999999999999999988653 3 999999999999999999976 59999999999875
Q ss_pred e
Q 018159 358 F 358 (360)
Q Consensus 358 ~ 358 (360)
.
T Consensus 102 ~ 102 (109)
T 2rs2_A 102 F 102 (109)
T ss_dssp C
T ss_pred c
Confidence 4
No 249
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.3e-17 Score=122.61 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=71.5
Q ss_pred CEEEEcCC----CCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecC----HHH----HHHHHH--HhcCCC
Q 018159 107 SEVFIGGL----PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS----KEF----AKKAID--ELHSKE 172 (360)
Q Consensus 107 ~~i~v~nL----p~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~----~~~----a~~a~~--~l~~~~ 172 (360)
..|||+|| |+.+++..|+++|++||.|.+|.++.|+.||+++|||||+|.+ +.. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 323 788887 689999
Q ss_pred CCCcEEEEeecCc
Q 018159 173 LKGKTIRCSLSET 185 (360)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (360)
|.|++|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998653
No 250
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-17 Score=120.75 Aligned_cols=78 Identities=23% Similarity=0.450 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+|+++|+.+|++||.|..+ ..+|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 56899999999999999999999999988666 3458999999999999999999999999999999999999997
Q ss_pred ccc
Q 018159 185 TKN 187 (360)
Q Consensus 185 ~~~ 187 (360)
++.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 251
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=122.80 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+|+++|+.+|++||.|..|.++. ++|||||+|.+.++|.+|+..||+..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998864 57899999999999999999999999999999999986
Q ss_pred c
Q 018159 185 T 185 (360)
Q Consensus 185 ~ 185 (360)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 252
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=115.33 Aligned_cols=72 Identities=21% Similarity=0.393 Sum_probs=67.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.+++ +||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4568999999999999999999999999999999983 59999999999999999999999999999999864
No 253
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=7.2e-17 Score=131.96 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+.+++++|+.+|++||.|..|.++.++ +|.++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCcccc
Q 018159 182 LSETKNR 188 (360)
Q Consensus 182 ~~~~~~~ 188 (360)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9876543
No 254
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-18 Score=131.47 Aligned_cols=83 Identities=33% Similarity=0.523 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEE--------EEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
.+.++|||+|||+.+++++|+.+|++||.|.. |.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35789999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred cEEEEeecCcc
Q 018159 176 KTIRCSLSETK 186 (360)
Q Consensus 176 ~~l~v~~~~~~ 186 (360)
+.|+|.++.++
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998754
No 255
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=3.6e-17 Score=125.19 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEE--EEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~--~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
.+...++|||+|||+.+|+++|+++|++| .|. .|+|+.++. |+++|||||+|.+.++|.+||. +++..|.||.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 566 899999987 9999999999999999999997 578999999999
Q ss_pred EeecCc
Q 018159 180 CSLSET 185 (360)
Q Consensus 180 v~~~~~ 185 (360)
|.++.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 256
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=1.8e-16 Score=119.54 Aligned_cols=91 Identities=14% Similarity=0.281 Sum_probs=75.6
Q ss_pred CCCCceeeecCCCCCCCccccccccceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHH
Q 018159 258 DGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336 (360)
Q Consensus 258 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~ 336 (360)
.|..+.+..+.+..... .....++|||+|||.. +++++|+++|++||.|..|.| .+|||||+|.+.++|.
T Consensus 6 ~g~~~~~~~s~~~~~~~---~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKND---PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSCC---CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCCC---CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHH
Confidence 45555555555433322 2244689999999999 999999999999999999999 2499999999999999
Q ss_pred HHHHhhCCceeCCeeEeEEee
Q 018159 337 KAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 337 ~A~~~lng~~~~G~~l~v~p~ 357 (360)
+|+..|||..|+|+.|+|.+.
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp HHHHHHTTCEETTEECCEEES
T ss_pred HHHHHcCCCEECCeEEEEEEC
Confidence 999999999999999999864
No 257
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=119.83 Aligned_cols=74 Identities=15% Similarity=0.349 Sum_probs=69.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|+|+.+ +|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 34679999999999999999999999999999999887 499999999999999999999999999999999864
No 258
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=3.9e-17 Score=127.16 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=70.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCc----eeCCee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--VVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKY----EIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~----~~~G~~ 351 (360)
...++|||+|||+.+|+++|+++|++||.|.. |+|+.++. +. +|||||+|.+. +|.+|+..|||. .|+||+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 55689999999999999999999999999976 99998874 33 99999999999 999999999999 999999
Q ss_pred EeEEee
Q 018159 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|.|...
T Consensus 100 l~V~~a 105 (131)
T 2m2b_A 100 INVEFA 105 (131)
T ss_dssp CCCEEC
T ss_pred EEEEEC
Confidence 998754
No 259
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.3e-17 Score=120.58 Aligned_cols=77 Identities=22% Similarity=0.440 Sum_probs=70.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+.. |+..|+|+.|.|.+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 456899999999999999999999999999999998875433 89999999999999999998 999999999998765
No 260
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.2e-16 Score=119.74 Aligned_cols=77 Identities=31% Similarity=0.575 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.....++|||+|||+.+|+++|+.+|++||.|..|.++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999997 6899999999999999999999999999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 99764
No 261
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.5e-17 Score=120.72 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=69.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEeee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPVF 358 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~~ 358 (360)
...++|||+|||+.+|+++|+++|++||. ..|+|+.++.+. +|||||+|.+.++|.+||. +|+..|+||.|.|.+..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45679999999999999999999999995 499998877655 9999999999999999995 79999999999998753
No 262
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.2e-17 Score=120.31 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=68.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..+.++..+.+ . +|||||+|.+.++|.+|+..|||..|.|++|+|...
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44679999999999999999999999999987655544333 3 899999999999999999999999999999999763
No 263
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=120.71 Aligned_cols=78 Identities=21% Similarity=0.403 Sum_probs=71.4
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
....++|||+|||..+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+.. ||..|+|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 3557899999999999999999999999999999998876533 89999999999999999998 99999999999987
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 103 a 103 (116)
T 1x4b_A 103 A 103 (116)
T ss_dssp C
T ss_pred C
Confidence 5
No 264
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=125.24 Aligned_cols=79 Identities=23% Similarity=0.416 Sum_probs=72.4
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
....++|||+|||..+++++|+.+|+.||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999998776543 89999999999999999999999999999999976
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 119 a 119 (139)
T 1u6f_A 119 A 119 (139)
T ss_dssp S
T ss_pred C
Confidence 4
No 265
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=2.2e-16 Score=117.48 Aligned_cols=72 Identities=26% Similarity=0.567 Sum_probs=67.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456899999999999999999999999999999987 379999999999999999999999999999999875
No 266
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=2.9e-17 Score=120.46 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=68.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.. . +|||||+|.+.++|.+|+..|||..|.|++|+|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34579999999999999999999999999987766654433 3 899999999999999999999999999999998753
No 267
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=2e-17 Score=122.98 Aligned_cols=80 Identities=29% Similarity=0.538 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+++++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999998 89999999999999999999997 9999999999998886
Q ss_pred ccc
Q 018159 185 TKN 187 (360)
Q Consensus 185 ~~~ 187 (360)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 268
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.3e-16 Score=119.59 Aligned_cols=73 Identities=19% Similarity=0.350 Sum_probs=68.3
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....++|||+|||..+++++|+.+|++||.|..|.++ +|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 3567899999999999999999999999999999998 499999999999999999999999999999999764
No 269
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=122.10 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.++.+. +|||||+|.+.++|.+|+. |||..|+||.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45679999999999999999999999998 8999999887765 9999999999999999999 99999999999998
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 88 ~a 89 (107)
T 2lmi_A 88 EI 89 (107)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 270
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-16 Score=117.62 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=68.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCC-----eeEeE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG-----KSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G-----~~l~v 354 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+|+..|||..|.| +.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 45689999999999999999999999999999999876 899999999999999999999999999 88888
Q ss_pred Eee
Q 018159 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
.+.
T Consensus 88 ~~a 90 (108)
T 1x4c_A 88 KVD 90 (108)
T ss_dssp EES
T ss_pred EeC
Confidence 753
No 271
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=3.9e-17 Score=127.04 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=71.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
...++|||+|||+.+|+++|+++|++||. |..|+|+.++.++ +|||||+|.+.++|.+|+. |||..|+||.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 44679999999999999999999999999 8899998877766 9999999999999999999 99999999999998
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 121 ~a 122 (136)
T 2hgl_A 121 KS 122 (136)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 272
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=6.9e-17 Score=112.84 Aligned_cols=72 Identities=24% Similarity=0.381 Sum_probs=66.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 284 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
+|||+|||..+++++|+++|++||.|..|.++.++.+. +|||||+|.+.++|.+|+.. ++..++|++|.|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 58999999999999999999999999999998876533 89999999999999999995 99999999999875
No 273
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=115.28 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+.+|+++|+.+|++||.|..|.+++ +||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345689999999999999999999999999999999973 499999999999999999999999999999999
Q ss_pred ecCccc
Q 018159 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998654
No 274
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=3.2e-17 Score=118.93 Aligned_cols=74 Identities=26% Similarity=0.467 Sum_probs=68.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
++|||+|||..+++++|+++|++||.|..|.++.++.+. +|||||+|.+.+ |.+|+..|||..++|+.|+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 589999999999999999999999999999999876533 899999999999 99999999999999999999874
No 275
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-16 Score=118.36 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=67.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+++++|+.+|++||.|..|++... +|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE----KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3579999999999999999999999999999999844 499999999999999999999999999999998764
No 276
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=114.00 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=67.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 5578999999999999999999999999999999973 59999999999999999999999999999999864
No 277
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=2.1e-17 Score=128.94 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+++|+++|+++|++|| |..|.|+.++. |+++|||||+|.+.++|.+|| .+|+..|.|+.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999 66999999986 999999999999999999999 7899999999999988
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.+.
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8653
No 278
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-16 Score=114.65 Aligned_cols=72 Identities=35% Similarity=0.498 Sum_probs=67.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+.+|++| |.|..|.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 567899999999999999999999999 999999886 379999999999999999999999999999999764
No 279
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=116.56 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=66.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.| +++....+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 457899999999999999999999999987 455554444 899999999999999999999999999999999864
No 280
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=119.98 Aligned_cols=78 Identities=29% Similarity=0.481 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCC---CCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
...++|||+|||+.+|+++|+.+|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|+..|++ ++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4578999999999999999999999999999 888888777 79999999999999999999998843 56666666
Q ss_pred eecC
Q 018159 181 SLSE 184 (360)
Q Consensus 181 ~~~~ 184 (360)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5544
No 281
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=1.2e-16 Score=117.67 Aligned_cols=77 Identities=18% Similarity=0.368 Sum_probs=69.1
Q ss_pred cccceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++++|||+|||..+++++|+ .+|++||.|..|.++.. +..+|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 457899999999999999999 99999999999999731 1127999999999999999999999999999999997
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 85 ~a 86 (97)
T 1nu4_A 85 YA 86 (97)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 282
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-16 Score=117.12 Aligned_cols=76 Identities=28% Similarity=0.513 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 103 PPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 103 ~~~~~~i~v~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.++.++|||+|||+ .+|+++|+.+|++||.|..|.+. +|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45688999999998 99999999999999999999984 7899999999999999999999999999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98754
No 283
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=118.74 Aligned_cols=78 Identities=22% Similarity=0.271 Sum_probs=69.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEcC-CCCCC--CCCeEEEEeCCHHHHHHHHHhhC--CceeCCeeEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMP-PGKSG--KRDFGFIHYAERSSALKAVKDTE--KYEIDGKSHL 353 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~-~~~~~--~kg~afV~F~~~~~A~~A~~~ln--g~~~~G~~l~ 353 (360)
.+.++|||+|||..+++++|+++|++||. |..|.++ .++.+ .+|||||+|.+.++|.+|+..|| +..|.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34679999999999999999999999998 9999998 55543 38999999999999999999996 5999999999
Q ss_pred EEee
Q 018159 354 HFPV 357 (360)
Q Consensus 354 v~p~ 357 (360)
|.+.
T Consensus 86 V~~a 89 (109)
T 2dis_A 86 VDWA 89 (109)
T ss_dssp EEES
T ss_pred EEEc
Confidence 9764
No 284
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.5e-16 Score=126.85 Aligned_cols=82 Identities=27% Similarity=0.549 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
....++|||+|||+.+|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 018159 183 SE 184 (360)
Q Consensus 183 ~~ 184 (360)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 285
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=114.63 Aligned_cols=77 Identities=35% Similarity=0.542 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|||+.+|+++|+.+|++||.|..+.+++ +||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999973 389999999999999999999999999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99765
No 286
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4e-16 Score=116.11 Aligned_cols=76 Identities=26% Similarity=0.428 Sum_probs=68.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+++++|+.+|++||.|..|+|+.++. +. +|||||+|.+.++|.+|+. ++..|+|+.|.|.+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 4568999999999999999999999999999999988764 33 8999999999999999999 478999999999864
No 287
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.7e-16 Score=116.45 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=67.2
Q ss_pred cccceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||. .+++++|+.+|++||.|..|.++ +|||||+|.+.++|.+|+..|||..+.|++|+|.+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4578999999998 99999999999999999999995 489999999999999999999999999999999875
No 288
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=9.6e-17 Score=119.80 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=66.9
Q ss_pred cccceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC--ceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng--~~~~G~~l~v~p 356 (360)
.++++|||+|||.. +++++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|+..||+ ..|.||+|+|..
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45789999999998 999999999999999999999865 49999999999999999998864 569999999875
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 99 a 99 (112)
T 1x4f_A 99 S 99 (112)
T ss_dssp E
T ss_pred C
Confidence 3
No 289
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=2.8e-16 Score=126.21 Aligned_cols=78 Identities=28% Similarity=0.373 Sum_probs=72.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+|+++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999998876543 899999999999999999999999999999999875
No 290
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=118.51 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=67.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
++|||+|||..+++++|+++|++||.|..|.++.+ .+|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 48999999999999999999999999999999887 4599999999999999999999999999999999864
No 291
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=5e-17 Score=126.83 Aligned_cols=76 Identities=13% Similarity=0.253 Sum_probs=69.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||+.+|+++|+++|++|| |..|+|+.++.+. +|||||+|.+.++|.+|| .+|+..|+||.|.|.+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4567999999999999999999999999 7799999887765 999999999999999999 78999999999998764
No 292
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=114.87 Aligned_cols=76 Identities=28% Similarity=0.426 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccC--CcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPI--GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
...++|||+|||+.+|+++|+.+|++| |.|..+.+. +|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357899999999999999999999999 899988774 6799999999999999999999999999999999
Q ss_pred ecCccc
Q 018159 182 LSETKN 187 (360)
Q Consensus 182 ~~~~~~ 187 (360)
++.+..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998654
No 293
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=4.2e-16 Score=112.15 Aligned_cols=71 Identities=24% Similarity=0.411 Sum_probs=66.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRH----G-------EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~----G-------~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
.+.++|||+|||..+++++|+++|++| | .|..+.++.++ |||||+|.+.++|.+|+ .|||..|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k----g~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----NFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS----SEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC----cEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 457899999999999999999999999 8 89999998764 99999999999999999 99999999
Q ss_pred CeeEeEE
Q 018159 349 GKSHLHF 355 (360)
Q Consensus 349 G~~l~v~ 355 (360)
|++|+|.
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999986
No 294
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=116.28 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEE-EEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV-RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
...++|||+|||+.+|+++|+.+|++||.|..+ .++.++.+ |.|||+|.+.+.|.+|+..||+..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 347899999999999999999999999999999 47777654 3499999999999999999999999999999999
Q ss_pred cCcc
Q 018159 183 SETK 186 (360)
Q Consensus 183 ~~~~ 186 (360)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9864
No 295
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=119.47 Aligned_cols=76 Identities=24% Similarity=0.316 Sum_probs=67.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v----~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++++|||+|||..+++++|+.+|++||.| ..+.+.. ...+|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT--GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC--SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC--CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999998 4555552 2237999999999999999999999999999999998
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 101 ~a 102 (115)
T 2cpx_A 101 FG 102 (115)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 296
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=2.5e-16 Score=117.16 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 457899999999999999999999999999999987 459999999999999999999999999999999999
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.+..
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7643
No 297
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.3e-17 Score=129.70 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEE-----eeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL-----MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~-----~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~ 177 (360)
....++|||+|||+.+|+++|+.+|++||.|..+.+ +....+|+++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 446789999999999999999999999998876410 111235899999999999999999999999999999999
Q ss_pred EEEeecCcc
Q 018159 178 IRCSLSETK 186 (360)
Q Consensus 178 l~v~~~~~~ 186 (360)
|+|.++.+.
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999753
No 298
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=116.90 Aligned_cols=72 Identities=17% Similarity=0.326 Sum_probs=63.7
Q ss_pred cccceEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCcee-----CCeeE
Q 018159 280 SQVKALYV--KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI-----DGKSH 352 (360)
Q Consensus 280 ~~~~~l~V--~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~-----~G~~l 352 (360)
.++++||| +|||..+++++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|||..+ .|+.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 34678999 669999999999999999999999999865 49999999999999999999999988 56666
Q ss_pred eEE
Q 018159 353 LHF 355 (360)
Q Consensus 353 ~v~ 355 (360)
.|.
T Consensus 99 ~v~ 101 (114)
T 2cq2_A 99 YLN 101 (114)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 299
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=1.2e-16 Score=123.17 Aligned_cols=77 Identities=19% Similarity=0.416 Sum_probs=70.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+ .|||..|+|+.|.|.+.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 45689999999999999999999999999999999876432 2 899999999999999999 79999999999999864
No 300
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.9e-16 Score=117.90 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=68.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeC--------Ce
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEID--------GK 350 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~--------G~ 350 (360)
...++|||+|||..+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|. |+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 456799999999999999999999999999999998887555 899999999999999999999999994 55
Q ss_pred eEeEEe
Q 018159 351 SHLHFP 356 (360)
Q Consensus 351 ~l~v~p 356 (360)
+|.|..
T Consensus 103 ~l~v~~ 108 (114)
T 1x5o_A 103 PLLCKF 108 (114)
T ss_dssp CBEEEE
T ss_pred ceeEEc
Confidence 566653
No 301
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=114.03 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|..| +.++.+|+ ||||+|.+.+.|.+|+. |++..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456899999999999999999999999999987 55655565 99999999999999998 9999999999999988
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.++
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 302
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=2.7e-16 Score=120.25 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=68.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCee--EEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
...++|||+|||+.+|+++|+++|++| .|. .|+|+.++.++ +|||||+|.+.++|.+|+.. ++..|+||.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 446789999999999999999999999 576 89999887765 99999999999999999995 78999999999987
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 118 a 118 (126)
T 2hgm_A 118 S 118 (126)
T ss_dssp E
T ss_pred C
Confidence 5
No 303
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=115.21 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=66.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|. +.++.+ ..+|||||+|.+.++|.+|+..|||..|+|++|+|.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4467999999999999999999999999996 555543 23699999999999999999999999999999999764
No 304
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=116.33 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCc-EEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcC-CCCCCcEEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~-~~~~g~~l~v 180 (360)
+...++|||+|||+++|+++|+.+|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999998 6666552 478999999999999999999999 9999999999
Q ss_pred eecCcc
Q 018159 181 SLSETK 186 (360)
Q Consensus 181 ~~~~~~ 186 (360)
.++.++
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999765
No 305
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-16 Score=123.20 Aligned_cols=77 Identities=17% Similarity=0.336 Sum_probs=68.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||+.+|+++|+.+|++||.|.. +.+.....+. +|||||+|.+.++|.+||. |||..|+|+.|.|.+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999987 4444444444 8999999999999999999 9999999999999875
No 306
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=1.5e-16 Score=120.84 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=65.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+|+..|||..|+|+.|.+..+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34679999999999999999999999999999999876 89999999999999999999999999999554443
No 307
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=7.8e-16 Score=127.69 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHhcCCcccCCCCceeeecCCCCCCCc---cccccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCC
Q 018159 240 NACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH---SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP 316 (360)
Q Consensus 240 ~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~ 316 (360)
...+..|+.......+.+.+....+........+.. .......++|||+|||..+++++|+.+|++||.|..|+|+.
T Consensus 64 ~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 64 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred HHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 445555555432244556666666655532221111 01234568999999999999999999999999999999998
Q ss_pred CCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 317 GKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 317 ~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+..+. +|||||+|.+.++|.+|+..++ ..|+|+.|.|++-
T Consensus 144 ~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 144 TLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp CTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred CCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 77665 9999999999999999998665 5999999999863
No 308
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=121.72 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=68.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v----~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
..++|||+|||+.+|+++|+++|++||.| ..|+|+.+..++ +|||||+|.+.++|.+||.. |+..|+||.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 35699999999999999999999999975 688888776666 99999999999999999996 9999999999987
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 101 ~a 102 (123)
T 2dha_A 101 RS 102 (123)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 309
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=6.1e-16 Score=126.29 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..++|||+|||+.+|+++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4689999999999999999999999999999999999989999999999999999999999999999999999999987
No 310
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=5.1e-16 Score=131.43 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=70.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+|+++|+++|++||.|.+|+|+.++.+. +|||||+|.+.++|.+|+..+|+..+.|+.|++.+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999998776543 899999999999999999999999999999998754
No 311
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=2.8e-16 Score=116.75 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=69.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+. ||..++|+.|.|.+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456899999999999999999999999999999998887554 8999999999999999999 999999999997654
No 312
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=8.3e-16 Score=117.45 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceE-EEEEecCHHHHHHHHHHhcCCCCCC--cEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIR 179 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~ 179 (360)
+..--.|||+|||+.+|+++|+.+|++||.|.+|+++.. ++|| |||+|.+.++|.+|+..|||..|.| +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 344557889999999999999999999999999998764 3677 9999999999999999999999988 8999
Q ss_pred EeecCccc
Q 018159 180 CSLSETKN 187 (360)
Q Consensus 180 v~~~~~~~ 187 (360)
|.++++.+
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99998764
No 313
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=4.6e-16 Score=117.22 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 105 NGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nLp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
..++|||+|||+. +|+++|+.+|++||.|..|.+ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999988 4789999999999999999999999999999999998
Q ss_pred Ccc
Q 018159 184 ETK 186 (360)
Q Consensus 184 ~~~ 186 (360)
.+.
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 314
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=8.5e-16 Score=125.57 Aligned_cols=80 Identities=28% Similarity=0.356 Sum_probs=73.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
....++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.+.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3557899999999999999999999999999999999887554 899999999999999999999999999999999876
Q ss_pred e
Q 018159 358 F 358 (360)
Q Consensus 358 ~ 358 (360)
.
T Consensus 165 ~ 165 (177)
T 2f3j_A 165 A 165 (177)
T ss_dssp S
T ss_pred c
Confidence 4
No 315
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=112.61 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=68.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..| .++.++.+ |.|||+|.+.++|.+|+..|||..|+|++|+|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346799999999999999999999999999999 47776644 45999999999999999999999999999999864
No 316
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=6.3e-16 Score=143.99 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+|+++|+.+|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cc
Q 018159 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
+.
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 54
No 317
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=1.5e-15 Score=112.79 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHhhccCCcEEEEEEeeCCCC-CCcceEEEEEecCHHHHHHHHHHhcCCCCCCc
Q 018159 103 PPNGSEVFIGGLPK-----DASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (360)
Q Consensus 103 ~~~~~~i~v~nLp~-----~~t~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~ 176 (360)
+.++++|+|+||.. +-++++|+.+|++||.|.+|.+++++.+ ++++|||||+|.+.++|.+|+..|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34688999999963 2378999999999999999999998754 68999999999999999999999999999999
Q ss_pred EEEEeecCc
Q 018159 177 TIRCSLSET 185 (360)
Q Consensus 177 ~l~v~~~~~ 185 (360)
.|+|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999875
No 318
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=115.12 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=66.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..+ ......+|||||+|.+.++|.+|+..|||..|+|++|.|.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 457899999999999999999999999988766 222223799999999999999999999999999999999864
No 319
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=116.41 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=67.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCC----C-CCeEEEEeCCHHHHHHHHHhh---CCc------
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----K-RDFGFIHYAERSSALKAVKDT---EKY------ 345 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~----~-kg~afV~F~~~~~A~~A~~~l---ng~------ 345 (360)
...++|||+|||..+++++|+++|++||.|. +.++.+..+ . +|||||+|.+.++|.+|+..| ||+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 4467999999999999999999999999999 887766542 3 899999999999999999998 676
Q ss_pred --eeCCeeEeEEeee
Q 018159 346 --EIDGKSHLHFPVF 358 (360)
Q Consensus 346 --~~~G~~l~v~p~~ 358 (360)
.+.++.|.|+|..
T Consensus 85 ~~~~~~~~~~v~p~~ 99 (114)
T 2dnl_A 85 SPTIKDKPVQIRPWN 99 (114)
T ss_dssp CSSSCSEEEEEECCC
T ss_pred CCCcCCCeeeccCCc
Confidence 5667788888754
No 320
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=1e-15 Score=127.96 Aligned_cols=85 Identities=27% Similarity=0.524 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98653
No 321
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-16 Score=117.79 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=66.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-C-CCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-G-KRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~-~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|.. .++.+.. + .+|||||+|.+.++|.+|+. |||..|.|+.|.|...
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999999887 4444322 2 38999999999999999999 9999999999999764
No 322
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1.3e-15 Score=120.90 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC--cEEEE
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRC 180 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v 180 (360)
+..-.+|||+|||+.+|+++|+.+|++||.|.+|++... +++|||||+|.+.++|.+|+..|||..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 334467899999999999999999999999999998753 358999999999999999999999999965 99999
Q ss_pred eecCccc
Q 018159 181 SLSETKN 187 (360)
Q Consensus 181 ~~~~~~~ 187 (360)
.+++++.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998754
No 323
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=111.30 Aligned_cols=77 Identities=21% Similarity=0.492 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEee
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (360)
+...++|||+|| ++|+++|+.+|++||.|..|.+. +++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345789999996 89999999999999999999983 5689999999999999999999999999999999999
Q ss_pred cCccc
Q 018159 183 SETKN 187 (360)
Q Consensus 183 ~~~~~ 187 (360)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98654
No 324
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=111.81 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=64.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+.+|++||.|..|.+ ++.+.+ ||||+|.+.++|.+|+. |||..|+|+.|.|.+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~--~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM--DKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE--CSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE--cCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 34579999999999999999999999999999833 222223 99999999999999999 9999999999998764
No 325
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.2e-15 Score=110.04 Aligned_cols=76 Identities=32% Similarity=0.541 Sum_probs=62.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC--CCCcEEE
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIR 179 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~--~~g~~l~ 179 (360)
.+....+|||+|||+++|+++|+.+|++||.|.+|+++++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999864 69999999999999983 44544 5699999
Q ss_pred EeecCcc
Q 018159 180 CSLSETK 186 (360)
Q Consensus 180 v~~~~~~ 186 (360)
|.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9998764
No 326
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=5e-16 Score=132.35 Aligned_cols=77 Identities=21% Similarity=0.350 Sum_probs=70.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..++|||+|||+.+|+++|+++|++|| .|..|+|+.++.+ . +|||||+|.+.++|.+||..|||..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 9999999888643 3 99999999999999999999999999999999986
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 327
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.2e-16 Score=112.76 Aligned_cols=73 Identities=21% Similarity=0.394 Sum_probs=65.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC-ceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng-~~~~G~~l~v~p~ 357 (360)
...++|||+|||..+++++|+++|++||. |..+.+. .+|||||+|.+.++|.+|+..||| ..|+|++|+|.+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 45679999999999999999999999999 6666653 259999999999999999999999 9999999999864
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=6.7e-16 Score=111.32 Aligned_cols=72 Identities=15% Similarity=0.325 Sum_probs=66.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..++|||+|||..+++++|+++|++| .|..|+++ ..+|||||+|.+.++|.+|+..|||..++|++|+|.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 45799999999999999999999999 99999885 23699999999999999999999999999999999764
No 329
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-15 Score=109.35 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=65.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.+.++|||+|| .+++++|+.+|++||.|..|.|... +|||||+|.+.++|.+|+..|||..|.|++|.|.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45679999996 8999999999999999999999643 499999999999999999999999999999999764
No 330
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=2.9e-15 Score=121.70 Aligned_cols=80 Identities=23% Similarity=0.526 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC--cEEEEe
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCS 181 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~ 181 (360)
...++|||+|||+.+++++|+.+|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|||..+.| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 356899999999999999999999999999999999999889999999999999999999999999999988 999998
Q ss_pred ec
Q 018159 182 LS 183 (360)
Q Consensus 182 ~~ 183 (360)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 331
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.2e-16 Score=114.79 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=68.4
Q ss_pred cCCCCCCEEEE--cCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCC-----
Q 018159 101 ALPPNGSEVFI--GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL----- 173 (360)
Q Consensus 101 ~~~~~~~~i~v--~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~----- 173 (360)
....+.++||| +|||+.+|+++|+++|++||.|..|.++. .+|||||+|.+.++|.+|+..|||..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456789999 77999999999999999999999998763 378999999999999999999999987
Q ss_pred CCcEEEEeecC
Q 018159 174 KGKTIRCSLSE 184 (360)
Q Consensus 174 ~g~~l~v~~~~ 184 (360)
.|++|.|.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 68888888764
No 332
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=107.26 Aligned_cols=67 Identities=24% Similarity=0.391 Sum_probs=60.0
Q ss_pred ccce-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 281 QVKA-LYVKNIPDNTSTEK----IKELFQRH-GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 281 ~~~~-l~V~nlp~~~t~~~----L~~~f~~~-G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
++.| |||+|||..++.++ |+++|++| |+|..|. + |+|||.|.+.++|.+|++.|||..+.||+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------g--G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------G--CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------T--TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------c--CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 4555 89999999999987 55899999 5999982 1 89999999999999999999999999999998
Q ss_pred E
Q 018159 355 F 355 (360)
Q Consensus 355 ~ 355 (360)
-
T Consensus 79 ~ 79 (96)
T 2diu_A 79 S 79 (96)
T ss_dssp E
T ss_pred E
Confidence 5
No 333
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=3.7e-15 Score=113.44 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=68.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceE-EEEEecCHHHHHHHHHHhcCCCCCC--cEEEEeec
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLS 183 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-a~v~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 183 (360)
..|||+|||+.+|+++|+.+|++||.|..|+++.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34689999999999999999999999999999752 276 9999999999999999999999987 69999999
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8765
No 334
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=2.7e-15 Score=111.34 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=67.7
Q ss_pred cccceEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEcCCCCC---CCCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018159 280 SQVKALYVKNIPD-----NTSTEKIKELFQRHGEVTKVVMPPGKS---GKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp~-----~~t~~~L~~~f~~~G~v~~v~i~~~~~---~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
.++++|+|+|+.. .-++++|+++|++||.|.+|+|+.++. ..+|||||+|.++++|.+|+..|||+.|+||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 236899999999999999999987653 23899999999999999999999999999999
Q ss_pred EeEEee
Q 018159 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|+|...
T Consensus 86 i~v~~a 91 (105)
T 2pe8_A 86 VKACFY 91 (105)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 998754
No 335
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=2.5e-15 Score=125.40 Aligned_cols=83 Identities=28% Similarity=0.545 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999999998999999999999999999999975 899999999999999
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.++.
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 8654
No 336
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=1.2e-15 Score=115.69 Aligned_cols=75 Identities=28% Similarity=0.446 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcE-----E
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT-----I 178 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~-----l 178 (360)
...++|||+|||+++|+++|+++|++||.|..|.++.+ |||||+|.+.++|.+||..||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999765 89999999999999999999999999998 6
Q ss_pred EEeecCc
Q 018159 179 RCSLSET 185 (360)
Q Consensus 179 ~v~~~~~ 185 (360)
.|..+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6666543
No 337
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=2.7e-15 Score=125.80 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=68.9
Q ss_pred ccceEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 281 QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 281 ~~~~l~V~nlp-~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
++++|||+||| ..+++++|+.+|++||.|.+|+|+.++ +|||||+|.+.++|.+|++.|||..+.|++|+|.+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 899999999999999999999998754 599999999999999999999999999999999853
No 338
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=4.3e-15 Score=107.09 Aligned_cols=71 Identities=23% Similarity=0.372 Sum_probs=60.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce--eCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~--~~G~~l~v~p~ 357 (360)
.+.++|||+|||..+|+++|+++|++||.|..|+|+.+ +||||||+|.+.++|.+ |+|.. +.|++|.|...
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 45679999999999999999999999999999999875 46999999999999984 55554 45999988753
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.3e-15 Score=109.52 Aligned_cols=72 Identities=25% Similarity=0.530 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccC----C-------cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
+..++|||+|||+++|+++|+.+|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999998643 899999999999999999 999999
Q ss_pred CCCcEEEEee
Q 018159 173 LKGKTIRCSL 182 (360)
Q Consensus 173 ~~g~~l~v~~ 182 (360)
+.|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 340
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=2.7e-15 Score=119.01 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=66.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCC--eeEeEEe
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG--KSHLHFP 356 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G--~~l~v~p 356 (360)
....+|||+|||+.+|+++|+++|++||.|.+|+|.... .+|||||+|.+.++|.+|+..|||..|.| ++|+|.+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 345679999999999999999999999999999986443 35899999999999999999999999965 9999865
No 341
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=111.63 Aligned_cols=76 Identities=26% Similarity=0.427 Sum_probs=64.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCC-CC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 279 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
..+.++|||+|||..+++++|+++|+.|+ .|.++.++. +. +|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35678999999999999999999999885 444444432 23 89999999999999999999999999999999976
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
.
T Consensus 89 a 89 (102)
T 2fc8_A 89 A 89 (102)
T ss_dssp C
T ss_pred e
Confidence 4
No 342
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=9e-17 Score=122.35 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=70.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEcCCCCCC-C-CCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
.+.++|||+|||..+++++|+++|++||.|.. |+|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45679999999999999999999999999998 888877543 3 8999999999999999999999999999
Q ss_pred eeEeEEee
Q 018159 350 KSHLHFPV 357 (360)
Q Consensus 350 ~~l~v~p~ 357 (360)
++|+|.+.
T Consensus 85 ~~l~V~~a 92 (116)
T 2lcw_A 85 NPIKVSFA 92 (116)
Confidence 99998764
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=9.2e-16 Score=121.30 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=66.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEE--------EcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV--------VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v--------~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
.++++|||+|||..+|+++|+.+|++||.|..+ ++.. ....+|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456799999999999999999999999998764 3321 2223799999999999999999999999999999
Q ss_pred EeEEee
Q 018159 352 HLHFPV 357 (360)
Q Consensus 352 l~v~p~ 357 (360)
|.|.+.
T Consensus 122 l~V~~a 127 (143)
T 3egn_A 122 MVVQFA 127 (143)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 999764
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=7.6e-15 Score=111.72 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=62.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCe-EEEEeCCHHHHHHHHHhhCCceeCC--eeEeEEe
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--KSHLHFP 356 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~-afV~F~~~~~A~~A~~~lng~~~~G--~~l~v~p 356 (360)
..|||+|||+.+++++|+++|++||.|..|+|... .|| |||+|.+.++|.+|+..|||..|.| ++|+|..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 45679999999999999999999999999998653 286 9999999999999999999999988 5787753
No 345
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=4.8e-15 Score=122.96 Aligned_cols=78 Identities=27% Similarity=0.452 Sum_probs=71.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (360)
.++|||+|||+.+|+++|+.+|++||.|..|+++++.. |+++|||||+|.+.++|.+|+..+ +..+.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 58999999999999999999999999999999999864 999999999999999999999755 5689999999998764
No 346
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=6.2e-15 Score=109.46 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=67.7
Q ss_pred cccceEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEcCCCCCC----CCCeEEEEeCCHHHHHHHHHhhCCc
Q 018159 280 SQVKALYVKNI--PDNTS--------TEKIKELFQRHGEVTKVVMPPGKSG----KRDFGFIHYAERSSALKAVKDTEKY 345 (360)
Q Consensus 280 ~~~~~l~V~nl--p~~~t--------~~~L~~~f~~~G~v~~v~i~~~~~~----~kg~afV~F~~~~~A~~A~~~lng~ 345 (360)
.++++|.|.|+ |..+. .++|+++|++||.|.+|+|+.+..+ .+|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999997 43443 3699999999999999999987653 3899999999999999999999999
Q ss_pred eeCCeeEeEEee
Q 018159 346 EIDGKSHLHFPV 357 (360)
Q Consensus 346 ~~~G~~l~v~p~ 357 (360)
.|+||+|+|...
T Consensus 83 ~f~GR~i~v~~~ 94 (105)
T 3v4m_A 83 KFANRVVVTKYC 94 (105)
T ss_dssp EETTEECEEEEE
T ss_pred EeCCCEEEEEEe
Confidence 999999998764
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=4.9e-15 Score=113.16 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=64.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCe-EEEEeCCHHHHHHHHHhhCCceeCC--eeEeEEe
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--KSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~-afV~F~~~~~A~~A~~~lng~~~~G--~~l~v~p 356 (360)
.-.|+|+|||+.+|+++|+++|++||.|.+|+|+... +|| |||+|.+.++|.+|++.|||..|.| ++|+|-.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3468899999999999999999999999999987543 477 9999999999999999999999998 8888753
No 348
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.8e-15 Score=112.24 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=65.6
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC--CCeEEEEeCC----HHH----HHHHHH--hhCCce
Q 018159 283 KALYVKNI----PDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAE----RSS----ALKAVK--DTEKYE 346 (360)
Q Consensus 283 ~~l~V~nl----p~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--kg~afV~F~~----~~~----A~~A~~--~lng~~ 346 (360)
+.|||+|| |+.+++..|+.+|+.||.|.++.++.++.+. +|||||+|.+ +.. |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999888775 9999999996 333 899999 899999
Q ss_pred eCCeeEeEE
Q 018159 347 IDGKSHLHF 355 (360)
Q Consensus 347 ~~G~~l~v~ 355 (360)
|+|++|+|.
T Consensus 83 I~Gr~irV~ 91 (136)
T 2j8a_A 83 IMGFKFEVI 91 (136)
T ss_dssp ETTEEEEEE
T ss_pred ecCcEEEEE
Confidence 999999985
No 349
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=9.3e-15 Score=119.47 Aligned_cols=79 Identities=27% Similarity=0.577 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCC---CcEEEEe
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIRCS 181 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~---g~~l~v~ 181 (360)
..++|||+|||+.+|+++|+.+|++||.|..+.+++++. |+++|||||+|.+.++|.+|+..|||..+. |++|+|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 568999999999999999999999999999999999864 999999999999999999999999998766 4999999
Q ss_pred ecC
Q 018159 182 LSE 184 (360)
Q Consensus 182 ~~~ 184 (360)
+|.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 350
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-15 Score=109.20 Aligned_cols=77 Identities=31% Similarity=0.522 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (360)
...++|||+|||+.+|+++|+.+|++||.|..|+++.+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35789999999999999999999999999999999864 68999999999999986542 234568999999998
Q ss_pred Cccc
Q 018159 184 ETKN 187 (360)
Q Consensus 184 ~~~~ 187 (360)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=8.4e-15 Score=111.89 Aligned_cols=77 Identities=21% Similarity=0.490 Sum_probs=70.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEe
Q 018159 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (360)
.+...++|||+|| ++|+++|+.+|++||.|..|.+. +++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456889999995 69999999999999999999985 568999999999999999999999999999999999
Q ss_pred ecCcc
Q 018159 182 LSETK 186 (360)
Q Consensus 182 ~~~~~ 186 (360)
++.+.
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99865
No 352
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=7.9e-15 Score=120.05 Aligned_cols=77 Identities=23% Similarity=0.454 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
..++|||+|||+.+|+++|+.+|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46899999999999999999999999988766 5568999999999999999999999999999999999999998
Q ss_pred cc
Q 018159 185 TK 186 (360)
Q Consensus 185 ~~ 186 (360)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=1.1e-14 Score=111.13 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=65.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
.++++|||+|| .+++++|+.+|++||.|..|.|+.. +|||||+|.+.++|.+|+..|||..|+|++|.|.+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~----kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT----TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 6999999999999999999999743 599999999999999999999999999999999764
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.4e-15 Score=105.81 Aligned_cols=73 Identities=22% Similarity=0.390 Sum_probs=61.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..+++|||+|||..+++++|+.+|++||.|..|+|+.+ .+|||||+|.+.++|.+|+.. +..+.|++|.|.+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 34679999999999999999999999999999999865 469999999999999864332 34568999988753
No 355
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2.4e-14 Score=122.50 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=71.7
Q ss_pred ccccccceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 277 AAASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 277 ~~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
....++++|||+|||. .+++++|+++|++||.|..|+|+.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3345678999999999 99999999999999999999998876 5899999999999999999999999999999997
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 106 ~a 107 (229)
T 2adc_A 106 LS 107 (229)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.4e-14 Score=107.15 Aligned_cols=76 Identities=9% Similarity=0.166 Sum_probs=65.5
Q ss_pred cccceEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018159 280 SQVKALYVKNIPDNTS-----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t-----------~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
.++++|+|+||..... +++|+.+|++||.|..|.|+... .+|||||+|.+.++|.+|+..|||+.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~--~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRH--PDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTC--TTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCC--CCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5678999999954432 57999999999999999774332 4799999999999999999999999999
Q ss_pred CeeEeEEee
Q 018159 349 GKSHLHFPV 357 (360)
Q Consensus 349 G~~l~v~p~ 357 (360)
||+|+|...
T Consensus 91 gr~l~v~~a 99 (112)
T 2dit_A 91 GRQITAQAW 99 (112)
T ss_dssp TEECEEEEC
T ss_pred CcEEEEEEe
Confidence 999999764
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.8e-14 Score=122.13 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=76.5
Q ss_pred CcccCCCCceeeecCCCCCCCccccccccceEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEcCCCCCCCCCe
Q 018159 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT---------STEKIKELFQRHGEVTKVVMPPGKSGKRDF 324 (360)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~---------t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~ 324 (360)
.....|+.....+....... .......++|||+|||..+ ++++|+.+|++||.|..|+|+.. +||
T Consensus 108 ~~D~fGr~k~~~~~d~~~g~--gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~ 181 (240)
T 3u1l_A 108 VLDCFGREKFADYREDMGGI--GSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNC 181 (240)
T ss_dssp SBCTTSSBCGGGTC-----------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTE
T ss_pred CcccccchhcccchhcccCc--CccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCE
Confidence 34445665444433332211 1224567899999999998 79999999999999999999865 499
Q ss_pred EEEEeCCHHHHHHHHHhhCCcee------------CCeeEeEEeee
Q 018159 325 GFIHYAERSSALKAVKDTEKYEI------------DGKSHLHFPVF 358 (360)
Q Consensus 325 afV~F~~~~~A~~A~~~lng~~~------------~G~~l~v~p~~ 358 (360)
|||+|.+.++|..|+..|||..| .|+.|.|++..
T Consensus 182 AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 182 GFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp EEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC
T ss_pred EEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEcc
Confidence 99999999999999999999999 89999998753
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4e-14 Score=106.76 Aligned_cols=84 Identities=26% Similarity=0.339 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcC
Q 018159 102 LPPNGSEVFIGGLPKDAS-----------EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~t-----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
.+..+++|+|+||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999944432 5799999999999999966 443 3799999999999999999999999
Q ss_pred CCCCCcEEEEeecCcccce
Q 018159 171 KELKGKTIRCSLSETKNRL 189 (360)
Q Consensus 171 ~~~~g~~l~v~~~~~~~~l 189 (360)
..+.|+.|+|.++.+....
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999999876543
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.2e-14 Score=121.57 Aligned_cols=80 Identities=20% Similarity=0.400 Sum_probs=71.4
Q ss_pred CCCCCCEEEEcCCCCCC---------CHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC
Q 018159 102 LPPNGSEVFIGGLPKDA---------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~~---------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
.....++|||+|||+.+ ++++|+.+|++||.|.+|+++. ++|||||.|.+.++|..|+..|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34578999999999998 7999999999999999999985 48999999999999999999999999
Q ss_pred C------------CCcEEEEeecCccc
Q 018159 173 L------------KGKTIRCSLSETKN 187 (360)
Q Consensus 173 ~------------~g~~l~v~~~~~~~ 187 (360)
| .|+.|.|.+|....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999998643
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=6.3e-14 Score=104.01 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=71.5
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHhhccCCcEEEEEEeeCCCC--CCcceEEEEEecCHHHHHHHHHHhcCCC
Q 018159 105 NGSEVFIGGL--PKDAS--------EEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 105 ~~~~i~v~nL--p~~~t--------~~~l~~~f~~~G~i~~~~~~~~~~~--~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
+++.|.|.|+ |.... .++|+..|++||.|.+|.|++++.+ ++++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5789999998 44443 3689999999999999999988764 4689999999999999999999999999
Q ss_pred CCCcEEEEeecCc
Q 018159 173 LKGKTIRCSLSET 185 (360)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (360)
+.||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.4e-14 Score=107.34 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=60.3
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEe
Q 018159 287 VKNIPDNTSTEKIKELF------------QRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHL 353 (360)
Q Consensus 287 V~nlp~~~t~~~L~~~f------------~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~ 353 (360)
+.|||..+++++|++.| ++||.|.+|.|+.+..+. +|||||+|.++++|.+|+..|||+.|+||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 44566667777666555 999999999999877655 99999999999999999999999999999999
Q ss_pred EEee
Q 018159 354 HFPV 357 (360)
Q Consensus 354 v~p~ 357 (360)
|...
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8753
No 362
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=5.5e-14 Score=117.41 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=68.8
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 282 VKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 282 ~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
+++|||+|||. .+++++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 46999999999 99999999999999999999998876 589999999999999999999999999999999764
No 363
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=1.2e-13 Score=121.91 Aligned_cols=77 Identities=17% Similarity=0.352 Sum_probs=69.6
Q ss_pred cccceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++++|||+|||..+++++|+ ++|++||.|..|+++. ....+|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 557899999999999999976 8999999999999886 22238999999999999999999999999999999997
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
+.
T Consensus 86 ~a 87 (282)
T 3pgw_A 86 YA 87 (282)
T ss_pred Ee
Confidence 64
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=5.6e-14 Score=106.27 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=66.7
Q ss_pred cccceEEEcCCCC--CC---CHHHHHHHHhhcCCeeEEEcCCCCCC-----C-CCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018159 280 SQVKALYVKNIPD--NT---STEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 280 ~~~~~l~V~nlp~--~~---t~~~L~~~f~~~G~v~~v~i~~~~~~-----~-kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
.++++|+|+|+-. .+ -+++|++.|++||.|.+|+|+.++.+ . +|+|||+|.++++|.+|+..|||+.|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3578999999842 22 25899999999999999999876532 2 699999999999999999999999999
Q ss_pred CeeEeEEee
Q 018159 349 GKSHLHFPV 357 (360)
Q Consensus 349 G~~l~v~p~ 357 (360)
||.|+|...
T Consensus 98 GR~i~v~~~ 106 (118)
T 3ue2_A 98 GRKVVAEVY 106 (118)
T ss_dssp TEECEEEEE
T ss_pred CcEEEEEEc
Confidence 999998765
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2.2e-14 Score=106.28 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=64.0
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 111 IGGLPKDASEEDLRDLC------------EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 111 v~nLp~~~t~~~l~~~f------------~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
+.|||+.+++++|+++| ++||.|.+|.++++.. |+++|||||+|.+.++|.+|+..|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777777666 9999999999998765 8999999999999999999999999999999999
Q ss_pred EEeecC
Q 018159 179 RCSLSE 184 (360)
Q Consensus 179 ~v~~~~ 184 (360)
+|.++.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 998863
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.46 E-value=3.5e-13 Score=101.17 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=65.6
Q ss_pred cccceEEEcCCCCCCC----------HHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCC
Q 018159 280 SQVKALYVKNIPDNTS----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t----------~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G 349 (360)
.++++|.|.|+-..-. +++|++.|++||.|.+|.|+++. .+|+|||+|.+.++|.+|++.|||+.|+|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4577999999743222 26889999999999999997764 37999999999999999999999999999
Q ss_pred eeEeEEeee
Q 018159 350 KSHLHFPVF 358 (360)
Q Consensus 350 ~~l~v~p~~ 358 (360)
|.|+|....
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999997653
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=2e-13 Score=103.17 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHhhccCCcEEEEEEeeCCC----CCCcceEEEEEecCHHHHHHHHHHhcCCCCCC
Q 018159 105 NGSEVFIGGLPK--DA---SEEDLRDLCEPIGDVFEVRLMKDKE----SGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 105 ~~~~i~v~nLp~--~~---t~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
++++|+|+|+-. ++ .+++|+..|++||.|.+|.|++++. +++++|+|||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999932 22 3689999999999999999998865 46788999999999999999999999999999
Q ss_pred cEEEEeecCc
Q 018159 176 KTIRCSLSET 185 (360)
Q Consensus 176 ~~l~v~~~~~ 185 (360)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=7e-13 Score=118.40 Aligned_cols=75 Identities=20% Similarity=0.393 Sum_probs=64.1
Q ss_pred cccceEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCcee---CCeeEeE
Q 018159 280 SQVKALYVKN--IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI---DGKSHLH 354 (360)
Q Consensus 280 ~~~~~l~V~n--lp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~---~G~~l~v 354 (360)
.++++|||+| |++.+|+++|+++|++||.|.+|.++.+ ||||||+|.+.++|.+|+..|||..+ .|+.+.+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT----CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 5678999999 5789999999999999999999999864 49999999999999999999999887 3665444
Q ss_pred Eeee
Q 018159 355 FPVF 358 (360)
Q Consensus 355 ~p~~ 358 (360)
...|
T Consensus 92 y~~~ 95 (345)
T 3tht_A 92 YLNF 95 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 3333
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.7e-12 Score=92.60 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=63.5
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 106 GSEVFIGGLP-------KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 106 ~~~i~v~nLp-------~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
..+|.|.-.+ ..+++++|+.+|++||.|..|.++ ++++|||||+|.+.++|..|+..+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4567777665 458999999999999999999998 47799999999999999999987444 679999
Q ss_pred EEeecCcc
Q 018159 179 RCSLSETK 186 (360)
Q Consensus 179 ~v~~~~~~ 186 (360)
+|.++.+.
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99998764
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.5e-12 Score=92.22 Aligned_cols=71 Identities=20% Similarity=0.161 Sum_probs=58.5
Q ss_pred cceEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeE
Q 018159 282 VKALYVKNIP-------DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLH 354 (360)
Q Consensus 282 ~~~l~V~nlp-------~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v 354 (360)
.++|.|...+ ..+++++|+.+|++||.|..|+|+. ..+|||||+|.+.++|.+|+..+++ +.|++|+|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 3455665544 4689999999999999999999983 2379999999999999999998655 67999998
Q ss_pred Eee
Q 018159 355 FPV 357 (360)
Q Consensus 355 ~p~ 357 (360)
.+.
T Consensus 85 ~~a 87 (100)
T 2d9o_A 85 SWL 87 (100)
T ss_dssp ECS
T ss_pred EEc
Confidence 764
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=1.4e-11 Score=92.31 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=67.0
Q ss_pred CCCCCEEEEcCCCCCC----------CHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC
Q 018159 103 PPNGSEVFIGGLPKDA----------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~----------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
|.++++|.|.|+=... .+++|+..|++||.|.+|.+.++. ++|+|||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568899999983322 134789999999999999987653 58999999999999999999999999
Q ss_pred CCCcEEEEeecCc
Q 018159 173 LKGKTIRCSLSET 185 (360)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (360)
+.||.|+|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999753
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.9e-11 Score=91.60 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=67.6
Q ss_pred cccceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCC-HHHHHHHHHhhC--CceeCCeeEeEE
Q 018159 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE-RSSALKAVKDTE--KYEIDGKSHLHF 355 (360)
Q Consensus 280 ~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~-~~~A~~A~~~ln--g~~~~G~~l~v~ 355 (360)
.+...|+|+||+.. ++.++|+.+|++||.|.+|.+..+. ..|||+|.+ ..+|..|+..|| |..|+|..+.+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 44679999999999 9999999999999999999999887 579999999 899999999995 899999999887
Q ss_pred ee
Q 018159 356 PV 357 (360)
Q Consensus 356 p~ 357 (360)
.|
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=1e-11 Score=110.94 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=65.7
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCC---CCc
Q 018159 102 LPPNGSEVFIGG--LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGK 176 (360)
Q Consensus 102 ~~~~~~~i~v~n--Lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~---~g~ 176 (360)
.+.++++|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|+..|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345688999999 588999999999999999999987753 479999999999999999999999876 355
Q ss_pred --EEEEeecC
Q 018159 177 --TIRCSLSE 184 (360)
Q Consensus 177 --~l~v~~~~ 184 (360)
.|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56777664
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=3.3e-11 Score=84.48 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=60.4
Q ss_pred cccceEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCee
Q 018159 280 SQVKALYVKNIP----DNTST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKS 351 (360)
Q Consensus 280 ~~~~~l~V~nlp----~~~t~----~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~ 351 (360)
++..||+|...| ..+-+ .+|.+.|++||.|..|++..++ +||+|.+.++|.+|+. |||..++||+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 445688988877 23333 6789999999999999999865 8999999999999999 9999999999
Q ss_pred EeEEe
Q 018159 352 HLHFP 356 (360)
Q Consensus 352 l~v~p 356 (360)
|+|..
T Consensus 78 LkV~l 82 (91)
T 2dnr_A 78 ITIAL 82 (91)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99975
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=2.5e-10 Score=85.56 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecC-HHHHHHHHHHhc--CCCCCCcEEE
Q 018159 104 PNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS-KEFAKKAIDELH--SKELKGKTIR 179 (360)
Q Consensus 104 ~~~~~i~v~nLp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~-~~~a~~a~~~l~--~~~~~g~~l~ 179 (360)
+.++.|+|+||++. ++.++|+.+|++||.|..|.+.++.. .|||.|.+ ...|..|+..++ +..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 46889999999999 99999999999999999999988764 59999999 899999999884 6788898887
Q ss_pred Eeec
Q 018159 180 CSLS 183 (360)
Q Consensus 180 v~~~ 183 (360)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7654
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=81.43 Aligned_cols=74 Identities=24% Similarity=0.412 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC
Q 018159 104 PNGSEVFIGGLPK----DASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (360)
Q Consensus 104 ~~~~~i~v~nLp~----~~t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g 175 (360)
++..||+|.-.|. .+-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|+. |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567899988872 3334 5788999999999999999864 8999999999999997 99999999
Q ss_pred cEEEEeecCcc
Q 018159 176 KTIRCSLSETK 186 (360)
Q Consensus 176 ~~l~v~~~~~~ 186 (360)
|.|+|+.+.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998753
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=8.8e-11 Score=82.66 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=60.8
Q ss_pred cccceEEEcCCCCC-----C-CH---HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCe
Q 018159 280 SQVKALYVKNIPDN-----T-ST---EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGK 350 (360)
Q Consensus 280 ~~~~~l~V~nlp~~-----~-t~---~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~ 350 (360)
++..||+|..++.. + .+ .+|.+.|++||.|..|++..++ +||+|.+.++|.+|+. |||..++||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 45669999998743 2 32 5789999999999999999875 9999999999999999 999999999
Q ss_pred eEeEEe
Q 018159 351 SHLHFP 356 (360)
Q Consensus 351 ~l~v~p 356 (360)
.|+|..
T Consensus 86 ~L~V~~ 91 (95)
T 1ufw_A 86 AVKISG 91 (95)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999975
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=6.6e-09 Score=74.45 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=67.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEe
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRH-----GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFP 356 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~-----G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p 356 (360)
.++|-|-|||..+++..|+.+..++ |.|+.|.+.++. +=|+|+|.+...|-+|.-.|+|..|.||+|+|-.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 5699999999999999999999999 999999999887 4599999999999999999999999999999865
Q ss_pred e
Q 018159 357 V 357 (360)
Q Consensus 357 ~ 357 (360)
+
T Consensus 97 v 97 (117)
T 2l9w_A 97 I 97 (117)
T ss_dssp H
T ss_pred H
Confidence 3
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=1.1e-09 Score=77.14 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=62.9
Q ss_pred CCCCCCEEEEcCCCCC-----CCH----HHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCC
Q 018159 102 LPPNGSEVFIGGLPKD-----ASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (360)
Q Consensus 102 ~~~~~~~i~v~nLp~~-----~t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 172 (360)
.-++..||+|.-++.. +-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||. |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3456788999998743 323 4688999999999999999874 9999999999999997 99999
Q ss_pred CCCcEEEEeecC
Q 018159 173 LKGKTIRCSLSE 184 (360)
Q Consensus 173 ~~g~~l~v~~~~ 184 (360)
+.||.|+|.+-.
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998754
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=1.7e-09 Score=91.76 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=55.8
Q ss_pred CCHHHHHHHHhhcCCeeEEEcCCCCCC-----C-CCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 294 TSTEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 294 ~t~~~L~~~f~~~G~v~~v~i~~~~~~-----~-kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
-.+++|+..|++||.|.+|.|+.+..+ . +|++||+|.+.++|.+|+..|||+.|+||.|++.-.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 346899999999999999999744322 3 899999999999999999999999999999998754
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.84 E-value=9.3e-09 Score=87.12 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHhhccCCcEEEEEEeeCC----CCCCcceEEEEEecCHHHHHHHHHHhcCCCC
Q 018159 103 PPNGSEVFIGGLPK-----DASEEDLRDLCEPIGDVFEVRLMKDK----ESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (360)
Q Consensus 103 ~~~~~~i~v~nLp~-----~~t~~~l~~~f~~~G~i~~~~~~~~~----~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 173 (360)
....+.+.+.|+-. .-.+++|+..|++||.|.++.++++. .+++++|++||+|.+.++|.+|+..|||..+
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 33455666666532 23467899999999999999998654 4458999999999999999999999999999
Q ss_pred CCcEEEEeecCc
Q 018159 174 KGKTIRCSLSET 185 (360)
Q Consensus 174 ~g~~l~v~~~~~ 185 (360)
.||.|.+.++..
T Consensus 201 ~gr~i~~~~~~~ 212 (222)
T 3dxb_A 201 AGRKVVAEVYDQ 212 (222)
T ss_dssp SSSBCEEEECCH
T ss_pred CCeEEEEEEcCH
Confidence 999999999763
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=5.3e-07 Score=64.64 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC-----CcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEE
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (360)
..++|-|-|||..++...|+.++.++ |.|..+.++.+. +-|+|+|.+...|-+|.-.|+|..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 999999998874 4699999999999999888999999999999
Q ss_pred Eee
Q 018159 180 CSL 182 (360)
Q Consensus 180 v~~ 182 (360)
|..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=1.2e-05 Score=57.30 Aligned_cols=87 Identities=22% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcc-----CCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEE
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEP-----IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~-----~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l 178 (360)
..+.+|.|.|||+.+.++.|.-+|.. -|.|..+.... +.|+|.|.+...|++.|+ ...+.|.|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 45789999999999999999999976 24898888764 369999999999999995 34788999999
Q ss_pred EEeecCc--ccceeecCCCCCCC
Q 018159 179 RCSLSET--KNRLFIGNVPKNWT 199 (360)
Q Consensus 179 ~v~~~~~--~~~l~v~nlp~~~~ 199 (360)
.|....+ ..++++.+||+.++
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCC
Confidence 9987655 47899999988764
No 384
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.25 E-value=6.4e-06 Score=60.74 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=61.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeC-CeeEeEEeee
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID-GKSHLHFPVF 358 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~-G~~l~v~p~~ 358 (360)
...+.|.|.+.|... -..|...|++||.|.....+.+ .....|.|.+..+|++||. .||..|+ +-.|-|+|+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 445789999999875 6678889999999998887433 3789999999999999999 5999998 4889999975
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=2.2e-05 Score=55.89 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=61.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhh-----cCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQR-----HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~-----~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
..++|.|.|||..++++.|.-+|.+ =|.|..|.... +-|+|+|.++..|.+.|+. ..+.|.|..|.|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 3569999999999999999999987 25888887755 3589999999999998883 4788999999999
Q ss_pred eee
Q 018159 356 PVF 358 (360)
Q Consensus 356 p~~ 358 (360)
|.|
T Consensus 80 P~~ 82 (104)
T 2dhx_A 80 PAP 82 (104)
T ss_dssp ECC
T ss_pred cCC
Confidence 975
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=2.7e-05 Score=55.73 Aligned_cols=70 Identities=21% Similarity=0.125 Sum_probs=58.1
Q ss_pred cceEEEcCCCCCC-CH----HHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEE
Q 018159 282 VKALYVKNIPDNT-ST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHF 355 (360)
Q Consensus 282 ~~~l~V~nlp~~~-t~----~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~ 355 (360)
.++|+|.||+..+ .. +.++.+|..|+.+......+.- .-..|.|.++++|.+|-..|++..|+|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4689999998655 22 5789999999988877665544 247999999999999999999999999988763
No 387
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.85 E-value=2.2e-05 Score=58.68 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=56.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEcCCCC-------------CC--CCCeEEEEeCCHHHHHHHHHhhCCce
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGK-------------SG--KRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~-------------~~--~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
.-|.|-+.|... ...+.+.|++||.|.. +.+.... .. ......|+|.++.+|.+||+ .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 467888888766 4567779999999976 3332210 00 13677999999999999999 59999
Q ss_pred eCCeeEeEEee
Q 018159 347 IDGKSHLHFPV 357 (360)
Q Consensus 347 ~~G~~l~v~p~ 357 (360)
|+|..|-|+|+
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99999999997
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.80 E-value=9.5e-05 Score=52.06 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=57.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCC--cceEEEEEecCHHHHHHHHHHhcCCCCC
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
++|.|++||+.+|++++.+.+..+..+....++..+.+.. .-+-|||.|.+.+++......++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999999999888888877664433 2356999999999999999999998764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.80 E-value=6.2e-05 Score=53.00 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=56.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC----CCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~----kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
.+|.|++||+++|++++.+.++....+.......++... -.-|||.|.+.+++......++|+.|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 479999999999999999999999988877776665322 456999999999999999999998874
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=3e-05 Score=55.54 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=63.7
Q ss_pred CCEEEEcCCCCCC-CH----HHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEE
Q 018159 106 GSEVFIGGLPKDA-SE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (360)
Q Consensus 106 ~~~i~v~nLp~~~-t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (360)
.++|+|.||+..+ .. ..++.+|..|+++....+++... -.-|.|.+.++|.+|...||+..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998865 32 46789999999998888876542 4899999999999999999999999999999
Q ss_pred eecCc
Q 018159 181 SLSET 185 (360)
Q Consensus 181 ~~~~~ 185 (360)
.++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99874
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.63 E-value=0.00021 Score=50.17 Aligned_cols=58 Identities=24% Similarity=0.446 Sum_probs=47.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhc
Q 018159 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (360)
Q Consensus 103 ~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~ 169 (360)
+.-.+.++| +.|+.+.-.+|..+|++||.| .|+.+-+. .|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 344567777 999999999999999999965 45565553 59999999999999998764
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.58 E-value=0.00021 Score=50.21 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=45.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln 343 (360)
..++| ++|..+.-.+|.++|+.||.|. |+.+.+ ..|||.|.+++.|..|++.++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-----TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 35556 9999999999999999999554 555555 579999999999999999764
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.00026 Score=49.92 Aligned_cols=54 Identities=19% Similarity=0.336 Sum_probs=45.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln 343 (360)
..++| ++|..+.-.+|.++|+.||.| .|..+.+ ..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 35566 999999999999999999943 3555555 479999999999999999875
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.22 E-value=0.00045 Score=48.84 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCC--cceEEEEEecCHHHHHHHHHHhcCCCCC
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELK 174 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 174 (360)
+-+|.||+||+.+|++++.+.+.++-.+....++..+.+.+ .-+.|||.|.+.++........+|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45799999999999999998888876654444444333221 1235999999999999999999987653
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.18 E-value=0.0006 Score=48.24 Aligned_cols=68 Identities=9% Similarity=0.135 Sum_probs=53.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCC----CCeEEEEeCCHHHHHHHHHhhCCceeC
Q 018159 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEID 348 (360)
Q Consensus 281 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~----kg~afV~F~~~~~A~~A~~~lng~~~~ 348 (360)
.+-+|.|++||+.+|++++.+.++..-.+.......++... -.-|||.|.+.++...-....+|..|-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 34589999999999999998888876565555555554322 345899999999999999999998874
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.02 E-value=0.0011 Score=46.67 Aligned_cols=54 Identities=26% Similarity=0.444 Sum_probs=45.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhc
Q 018159 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (360)
Q Consensus 107 ~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~ 169 (360)
+.++| +.|+.+.-.+|..+|++||.| .|+.+-+. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 44666 999999999999999999955 56666554 59999999999999998764
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.96 E-value=0.0028 Score=46.71 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=56.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCC-cEEEEeec
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KTIRCSLS 183 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~ 183 (360)
..+-|.|-+.|+.. ...|..+|++||.|....... ......|.|.++.+|++||. .||..+.| --|=|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 46789999999986 567889999999998887622 23479999999999999995 69998875 44556554
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.09 E-value=0.0028 Score=58.51 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=43.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH
Q 018159 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (360)
Q Consensus 105 ~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~ 166 (360)
..|+|||. .|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 36899998 79999999999999999999999998654 2599999999999998774
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.01 E-value=0.003 Score=58.38 Aligned_cols=56 Identities=9% Similarity=0.248 Sum_probs=43.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
.++|+|. .|..+++.+|.++|++||.|.++.+...++ .||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 4689998 799999999999999999999999987653 6999999999998877653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.13 E-value=0.016 Score=43.26 Aligned_cols=77 Identities=9% Similarity=0.162 Sum_probs=54.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEE-Eee------------CCCCC-CcceEEEEEecCHHHHHHHHHHhcCC
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR-LMK------------DKESG-ESKGFAFVSFRSKEFAKKAIDELHSK 171 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~-~~~------------~~~~~-~~~g~a~v~f~~~~~a~~a~~~l~~~ 171 (360)
...|.|-+.|+..+. .|...|++||.|..-. +.+ .+..+ .......|.|.++.+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456888899877654 6778899999885521 111 00001 123467899999999999995 6999
Q ss_pred CCCCcEEEEeecC
Q 018159 172 ELKGKTIRCSLSE 184 (360)
Q Consensus 172 ~~~g~~l~v~~~~ 184 (360)
.+.|.-|=|.++.
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877777764
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.04 E-value=1.2 Score=41.80 Aligned_cols=55 Identities=18% Similarity=0.313 Sum_probs=45.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhC
Q 018159 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (360)
Q Consensus 282 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ln 343 (360)
...++|+ +|..+...+|.++|+.||.| .|+...+ ..|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHH
Confidence 4466666 89999999999999999954 5665555 479999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.59 E-value=1.5 Score=41.27 Aligned_cols=56 Identities=23% Similarity=0.407 Sum_probs=44.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcC
Q 018159 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 106 ~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
...++|+ +|..+...+|.++|+.||.+ .|+.+-+. .|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 3466666 99999999999999999955 45554332 599999999999999988753
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=80.43 E-value=5.2 Score=26.40 Aligned_cols=59 Identities=5% Similarity=0.066 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhhcCC-----eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 292 DNTSTEKIKELFQRHGE-----VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 292 ~~~t~~~L~~~f~~~G~-----v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
..+...+|..++..-+. |-.|.|.. .|.||+-... .|..++..|++..+.|+++.+.+.
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 55677788887776554 44667754 4789887766 577889999999999999998875
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=75.34 E-value=16 Score=24.75 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=47.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCC
Q 018159 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (360)
Q Consensus 280 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng 344 (360)
...+-|.|-|+|..+-..++.-.....|---.+.... |.|.|.|.+......|++.|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec------CeeEEEecCChHHHHHHHHHHh
Confidence 3456788999999999988887778888666666554 5699999999999989887643
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=70.56 E-value=4.3 Score=31.76 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=37.0
Q ss_pred ceEEEcCCCC-C--------CCHHHHHHHH--hhcCCeeEEEcCCCCCCCCCeEEEEeCCHH
Q 018159 283 KALYVKNIPD-N--------TSTEKIKELF--QRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333 (360)
Q Consensus 283 ~~l~V~nlp~-~--------~t~~~L~~~f--~~~G~v~~v~i~~~~~~~kg~afV~F~~~~ 333 (360)
.++.|-|+|. . .+...|++.| +.|.++. |+...+..+.+|+|.|.|..--
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCCh
Confidence 4677888886 2 3457999977 8998876 5555566666899999998643
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=66.90 E-value=27 Score=23.71 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCcEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcC
Q 018159 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (360)
Q Consensus 104 ~~~~~i~v~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 170 (360)
...+-|.|-|+|..+-..++.-.....|---.|..+ .|.|.|.|.+.+....|++.|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 457889999999999999888777888866667655 45699999999999999987643
No 407
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=55.85 E-value=34 Score=22.24 Aligned_cols=58 Identities=14% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCHHHHHHhhccCC-----cEEEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 018159 118 ASEEDLRDLCEPIG-----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (360)
Q Consensus 118 ~t~~~l~~~f~~~G-----~i~~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (360)
+...+|..++..-+ .|-.+.+..+ |.||+-.... |..++..|++..+.|+.++|..++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 56667776665433 4666776533 6888876654 667777889999999999887664
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=49.71 E-value=35 Score=26.63 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=36.9
Q ss_pred EEEEcCCCCC---------CCHHHHHHhh--ccCCcEEEEEEeeCCCCCCcceEEEEEecCHHH-HHHHH
Q 018159 108 EVFIGGLPKD---------ASEEDLRDLC--EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF-AKKAI 165 (360)
Q Consensus 108 ~i~v~nLp~~---------~t~~~l~~~f--~~~G~i~~~~~~~~~~~~~~~g~a~v~f~~~~~-a~~a~ 165 (360)
++.|-|+|.. .....|++.| +.|.++. ++.+..+ ...+|+|.|.|.+--. -..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 4667788762 3456899977 9999876 4444444 3468899999976533 34444
No 409
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=40.55 E-value=4.9 Score=29.08 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=35.6
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHH-Hh-----------------hCCceeCCeeEeEEeeecC
Q 018159 309 VTKVVMPPGKSGKRDFGFIHYAERSSALKAV-KD-----------------TEKYEIDGKSHLHFPVFVL 360 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~-~~-----------------lng~~~~G~~l~v~p~~v~ 360 (360)
|..|+|.+.+.+..|.|...|.++..-...- .. .+.+.++|++..|...|+|
T Consensus 15 vpdVrLtRsrdg~~g~A~f~F~~p~al~~~~~~~itgm~LiDeEGei~t~~v~aKFvnGkp~~iEa~y~m 84 (120)
T 2kvo_A 15 VPEVRLSKSKNGQSGMAKFYFLEPTILAKESTDDITGMYLIDDEGEIITREVKGKFINGRPTAIEATVIL 84 (120)
T ss_dssp CCEEEEEECTTSCSEEEEEEEESCGGGTSSCGGGCCCEEEECSSCEEEECCEEEEEETTEEEEEEEEEEE
T ss_pred CCceEEEEcccCCccEEEEEECCchhccccccCcceeEEEEccCccEEEEecceEEECCceeEEEEEEEE
Confidence 7789999999988999999999986432210 11 1234567777777766653
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.60 E-value=73 Score=21.59 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=38.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018159 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 285 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
-++-.+....|..+|++.+.+ || .|..|.....+.+. --|||++..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~-KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE-KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC-EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc-eEEEEEcCCCCcHHHHHHh
Confidence 344556778999999999988 55 56677554433322 2499999988888776554
No 411
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=33.75 E-value=88 Score=19.57 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=42.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 018159 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (360)
Q Consensus 283 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (360)
.++.|.++.-.--...|...+.. ..|..+.+.... +.+.|.|.+......|++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~----~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE----AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE----EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC----CEEEEEECCHHHHHHHHHH
Confidence 47889999877778899999999 889888876554 5688998866666677764
No 412
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=32.90 E-value=46 Score=23.63 Aligned_cols=36 Identities=11% Similarity=0.311 Sum_probs=28.7
Q ss_pred CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCce
Q 018159 308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (360)
Q Consensus 308 ~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~ 346 (360)
.|.+|..+.+- +||-||+=.+..+...|+..+.+..
T Consensus 40 ~I~Si~~~~~l---kGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHV---KGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTC---CSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCC---ceEEEEEeCCHHHHHHHHhccccee
Confidence 47777776553 6999999999999999999876653
No 413
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=29.03 E-value=60 Score=26.01 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=32.9
Q ss_pred eeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHHhhCCceeCCeeEeEEee
Q 018159 309 VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGKSHLHFPV 357 (360)
Q Consensus 309 v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~lng~~~~G~~l~v~p~ 357 (360)
|.+|..+.+ -+||.||+=....+...|++.+.+... .++.+.|+
T Consensus 139 I~Si~~~d~---lkGYIyVEA~~~~~V~~ai~Gi~~vy~--~~~~lVPi 182 (200)
T 2exu_A 139 ILSIFQRDN---YTGRIYIEAPKQSVIEKFCNGVPDIYI--SQKLLIPV 182 (200)
T ss_dssp CCEEECCTT---STTEEEEECSCHHHHHHHHTTCTTEEE--EEEEECCG
T ss_pred EEEEEecCC---CcEEEEEEECCHHHHHHHHhhhhhhhc--CCceEecH
Confidence 677777653 369999999999999999998888633 34455554
No 414
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=25.03 E-value=1.7e+02 Score=20.07 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=43.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHhhccCCc---EEEEEEeeCCCCCCcceEEEEEec--CHHHHHHHHHHhcC
Q 018159 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFR--SKEFAKKAIDELHS 170 (360)
Q Consensus 101 ~~~~~~~~i~v~nLp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~a~v~f~--~~~~a~~a~~~l~~ 170 (360)
..++..+.|.|.-....+.+.-|..+.+.||- |....+-.- .|..-|.-+|.+. +.+...+|+..|..
T Consensus 15 ~~~~~~~lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i--~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 15 PLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNT--KNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp SCCTTCEEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEE--TTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEe--CCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 33334556666655556777778888888883 333333332 2567788899998 46677788877654
No 415
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.96 E-value=1.2e+02 Score=20.52 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=20.4
Q ss_pred cEEEEEEeeCCCCCCcceEEEEEec
Q 018159 132 DVFEVRLMKDKESGESKGFAFVSFR 156 (360)
Q Consensus 132 ~i~~~~~~~~~~~~~~~g~a~v~f~ 156 (360)
.|..+++..-...|+-++||-|.|.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5778888777667899999999875
No 416
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=21.55 E-value=1.2e+02 Score=20.40 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=36.5
Q ss_pred EEcCCCCCCCHHHHHHHHhh-cC-CeeEEEcCCCCCCCCCeEEEEeCCHHHHHHHHH
Q 018159 286 YVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (360)
Q Consensus 286 ~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (360)
++-.++...|..+|++.+.+ || .|..|.....+.+. --|||++..-.+|.....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~-KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE-KKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSS-EEEEEEECTTSCHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCc-eEEEEEECCCCcHHHHHH
Confidence 44556778999999999987 56 56666544433322 249999988777665443
No 417
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=20.41 E-value=60 Score=31.42 Aligned_cols=45 Identities=9% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHH----hhcCCeeEEEcCCCCCCC-CCeEEEEeCCHHHHHHHHHhh
Q 018159 298 KIKELF----QRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342 (360)
Q Consensus 298 ~L~~~f----~~~G~v~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l 342 (360)
+|+.+| ..+|-|+.+.+...+... +.++++.|.+.++|..|+..+
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
No 418
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.10 E-value=1.5e+02 Score=20.93 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=20.2
Q ss_pred cEEEEEEeeCCCCCCcceEEEEEec
Q 018159 132 DVFEVRLMKDKESGESKGFAFVSFR 156 (360)
Q Consensus 132 ~i~~~~~~~~~~~~~~~g~a~v~f~ 156 (360)
.|..+++.+-...|+-++||-|.|.
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~d 29 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEET
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEEC
Confidence 5677888777667899999999875
Done!