BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018160
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 162/290 (55%), Positives = 206/290 (71%), Gaps = 6/290 (2%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
M KK++ ++ D++GK+VF R D NVP++ ITDDTRIRAA+PTI++LI++GAKVIL
Sbjct: 1 MNKKTIRDV---DVRGKRVFCRVDFNVPMEQGA-ITDDTRIRAALPTIRYLIEHGAKVIL 56
Query: 130 SSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
+SHLGRPKG V + L + RL ELL V K ++ +G EV+ V L EG VLLLEN
Sbjct: 57 ASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLEN 116
Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKEL 248
VRFY EEKNDPE AK A LADLYVNDAFG AHRAHASTEG+ YL P+VAGFL++KEL
Sbjct: 117 VRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKEL 175
Query: 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS 308
+ L A+S+P RPF AI+GG+KV KIGVI++LLE D L++GGG+ +TF KA G VG
Sbjct: 176 EVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGK 235
Query: 309 SLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKVCFLNS 358
SL+EE GV +P DVV+AD+FA DAN+KV +++
Sbjct: 236 SLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDA 285
>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From
The Hyperthermophilic Bacterium Thermotoga Maritima
Length = 398
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 150/278 (53%), Positives = 191/278 (68%), Gaps = 3/278 (1%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV-T 140
DLKGK+V +R D NVP+ D + DDTRIRAA+PTIK+ ++ GAKVIL SHLGRPKG +
Sbjct: 9 DLKGKRVIMRVDFNVPVKDGV-VQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPS 67
Query: 141 PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDP 200
P+FSLAP+ RLSELLG +V +G EV+K V L EG VLLLEN RF+ E KNDP
Sbjct: 68 PEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDP 127
Query: 201 EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKR 260
E AK ASLAD++VNDAFGTAHRAHAS G+ +++ PSVAGFL++KE+ +L +P++
Sbjct: 128 ELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI-PSVAGFLMEKEIKFLSKVTYNPEK 186
Query: 261 PFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEXXXXXXX 320
P+ ++GG+KVS KIGVI +L+E D +L+GG M+FTF KA G VGSS VEE
Sbjct: 187 PYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAK 246
Query: 321 XXXXXXXXXGVNLLLPSDVVIADKFAPDANSKVCFLNS 358
GV ++LP D VIA K P KV ++
Sbjct: 247 ELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDD 284
>pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus
Anthracis
Length = 394
Score = 273 bits (699), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 152/288 (52%), Positives = 201/288 (69%), Gaps = 6/288 (2%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131
KKS+ ++ DLKGK+VF R D NVP + + ITD+TRIRAA+PTI++L++ GAKVIL+S
Sbjct: 3 KKSIRDV---DLKGKRVFCRVDFNVPXKEGK-ITDETRIRAALPTIQYLVEQGAKVILAS 58
Query: 132 HLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190
HLGRPKG + L P+ RL ELLG V KAD+ GP ++ VA+ EG VL+LENVR
Sbjct: 59 HLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEXVAAXNEGDVLVLENVR 118
Query: 191 FYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDY 250
FY EEKND E AK+ A+LAD++VNDAFG AHRAHAST G+ YL P+V+G L +KEL+
Sbjct: 119 FYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLXEKELEV 177
Query: 251 LVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSL 310
L A+S+P+RPFAAI+GG+KV KIG+I LL+ D L++GGG+ +TF KA G +G SL
Sbjct: 178 LGKALSNPERPFAAIIGGAKVKDKIGLIRHLLDKVDNLIIGGGLAYTFVKALGHEIGLSL 237
Query: 311 VEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKVCFLNS 358
E+ GVN P DVVI ++F+ A +K+ ++S
Sbjct: 238 CEDDKIELAKEFXQLAKEKGVNFYXPVDVVITEEFSETATTKIVGIDS 285
>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Campylobacter Jejuni.
pdb|3Q3V|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Campylobacter Jejuni
Length = 403
Score = 251 bits (640), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 177/286 (61%), Gaps = 2/286 (0%)
Query: 69 SMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVI 128
S A + + DL KKVF+R D NVP DD NITDD RIR+A+PTI++ + NG VI
Sbjct: 1 SNAXSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVI 60
Query: 129 LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
L+SHLGRPK ++ K+SL P+ RL+ LL ++V A D IG + + +L G +LLLEN
Sbjct: 61 LASHLGRPKEISSKYSLEPVAKRLARLLDKEIVXAKDVIGEDAKTKAXNLKAGEILLLEN 120
Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL--KPSVAGFLLQK 246
+RF K E KND AK+LAS +Y+NDAFG HRAH+S E +TK+ K AGFLLQK
Sbjct: 121 LRFEKGETKNDENLAKELASXVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQK 180
Query: 247 ELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISV 306
E+D+ + P RPF A+VGGSKVS K+ + +LL D L++GGG FTF KA G +
Sbjct: 181 EIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGXAFTFLKALGYDI 240
Query: 307 GSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
G+SL+EE GV + LP DVV A + D K
Sbjct: 241 GNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPXK 286
>pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2
pdb|2P9Q|B Chain B, Crystal Structure Of Phosphoglycerate Kinase-2
pdb|2P9T|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To 3-
Phosphoglycerate
pdb|2PAA|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To
Atp And 3pg
pdb|2PAA|B Chain B, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To
Atp And 3pg
Length = 416
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 182/295 (61%), Gaps = 24/295 (8%)
Query: 78 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRP 136
L DLKGK+V +R D NVP+ +NQ IT++ RI+AA+P+IKH + NGAK V+L SHLGRP
Sbjct: 8 LDKVDLKGKRVIMRVDFNVPMKNNQ-ITNNQRIKAAIPSIKHCLDNGAKSVVLMSHLGRP 66
Query: 137 KGVT--PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKE 194
G+ K+SL P+ L LL V+ DC+GPEVE+ A+ G ++LLEN+RF+ E
Sbjct: 67 DGIPMPDKYSLEPVADELKSLLNKDVIFLKDCVGPEVEQACANPDNGSIILLENLRFHVE 126
Query: 195 EEKN-----------DPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSV 239
EE DP F L+ L D+YVNDAFGTAHRAH+S GV L
Sbjct: 127 EEGKGKDSSGKKISADPAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKA 184
Query: 240 AGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFY 299
+GFL++KELDY A+ P+RPF AI+GG+KV KI +I+++L+ + +++GGGM +TF
Sbjct: 185 SGFLMKKELDYFSKALEKPERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAYTFL 244
Query: 300 KA-QGISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKV 353
K + + +G+SL +E GV ++ P D V DKF D N+KV
Sbjct: 245 KELKNMQIGASLFDEEGATIVKEIMEKAEKNGVKIVFPVDFVTGDKF--DENAKV 297
>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Adp
pdb|3C39|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C39|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C3A|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3A|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3B|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3B|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3C|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
pdb|3C3C|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
Length = 420
Score = 238 bits (606), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/290 (46%), Positives = 181/290 (62%), Gaps = 24/290 (8%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVT 140
D+KGK+V +R D NVP+ +NQ IT++ RI+AAVP+IK + NGAK V+L SHLGRP GV
Sbjct: 16 DVKGKRVVMRVDFNVPMKNNQ-ITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVP 74
Query: 141 --PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE-- 196
K+SL P+ L LLG V+ DC+GPEVEK A+ G V+LLEN+RF+ EEE
Sbjct: 75 MPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGK 134
Query: 197 ---------KNDPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFL 243
K +P F L+ L D+YVNDAFGTAHRAH+S GV L GFL
Sbjct: 135 GKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKAGGFL 192
Query: 244 LQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-Q 302
++KEL+Y A+ SP+RPF AI+GG+KV+ KI +I ++L+ + +++GGGM FTF K
Sbjct: 193 MKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLN 252
Query: 303 GISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
+ +G+SL +E GV + LP D V ADKF D N+K
Sbjct: 253 NMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKF--DENAK 300
>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Binary Complex With 3pg
pdb|2XE7|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Adp
pdb|2XE8|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Amp-Pnp
pdb|2YBE|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride At 2.0 A Resolution
Length = 417
Score = 238 bits (606), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 136/290 (46%), Positives = 181/290 (62%), Gaps = 24/290 (8%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVT 140
D+KGK+V +R D NVP+ +NQ IT++ RI+AAVP+IK + NGAK V+L SHLGRP GV
Sbjct: 13 DVKGKRVVMRVDFNVPMKNNQ-ITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVP 71
Query: 141 --PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE-- 196
K+SL P+ L LLG V+ DC+GPEVEK A+ G V+LLEN+RF+ EEE
Sbjct: 72 MPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGK 131
Query: 197 ---------KNDPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFL 243
K +P F L+ L D+YVNDAFGTAHRAH+S GV L GFL
Sbjct: 132 GKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKAGGFL 189
Query: 244 LQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-Q 302
++KEL+Y A+ SP+RPF AI+GG+KV+ KI +I ++L+ + +++GGGM FTF K
Sbjct: 190 MKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLN 249
Query: 303 GISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
+ +G+SL +E GV + LP D V ADKF D N+K
Sbjct: 250 NMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKF--DENAK 297
>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
pdb|2Y3I|D Chain D, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
Length = 416
Score = 238 bits (606), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 136/290 (46%), Positives = 181/290 (62%), Gaps = 24/290 (8%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVT 140
D+KGK+V +R D NVP+ +NQ IT++ RI+AAVP+IK + NGAK V+L SHLGRP GV
Sbjct: 13 DVKGKRVVMRVDFNVPMKNNQ-ITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVP 71
Query: 141 --PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE-- 196
K+SL P+ L LLG V+ DC+GPEVEK A+ G V+LLEN+RF+ EEE
Sbjct: 72 MPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGK 131
Query: 197 ---------KNDPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFL 243
K +P F L+ L D+YVNDAFGTAHRAH+S GV L GFL
Sbjct: 132 GKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKAGGFL 189
Query: 244 LQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-Q 302
++KEL+Y A+ SP+RPF AI+GG+KV+ KI +I ++L+ + +++GGGM FTF K
Sbjct: 190 MKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLN 249
Query: 303 GISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
+ +G+SL +E GV + LP D V ADKF D N+K
Sbjct: 250 NMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKF--DENAK 297
>pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp
pdb|1VJD|A Chain A, Structure Of Pig Muscle Pgk Complexed With Atp
Length = 416
Score = 238 bits (606), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 135/290 (46%), Positives = 180/290 (62%), Gaps = 24/290 (8%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVT 140
D+KGK+V +R D NVP+ +NQ IT++ RI+AA+P+IK + NGAK V+L SHLGRP G+
Sbjct: 12 DVKGKRVVMRVDFNVPMKNNQ-ITNNQRIKAAIPSIKFCLDNGAKSVVLMSHLGRPDGIP 70
Query: 141 --PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE-- 196
K+SL P+ L LLG V+ DC+GPEVEK A G V+LLEN+RF+ EEE
Sbjct: 71 MPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACADPAAGSVILLENLRFHVEEEGK 130
Query: 197 ---------KNDPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFL 243
K DP F L+ L D+YVNDAFGTAHRAH+S GV L GFL
Sbjct: 131 GKDASGSKVKADPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPKKAGGFL 188
Query: 244 LQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-Q 302
++KEL+Y A+ SP+RPF AI+GG+KV+ KI +I ++L+ + +++GGGM FTF K
Sbjct: 189 MKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLN 248
Query: 303 GISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
+ +G+SL +E GV + LP D V ADKF D N+K
Sbjct: 249 NMEIGTSLFDEEGSKIVKDLMSKAEKNGVKITLPVDFVTADKF--DENAK 296
>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Magnesium Trifluoride
pdb|2WZC|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Aluminium Tetrafluoride
pdb|2X13|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
3phosphoglycerate
pdb|2X15|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
1,3- Bisphosphoglycerate
Length = 416
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 136/290 (46%), Positives = 181/290 (62%), Gaps = 24/290 (8%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVT 140
D+KGK+V +R D NVP+ +NQ IT++ RI+AAVP+IK + NGAK V+L SHLGRP GV
Sbjct: 12 DVKGKRVVMRVDFNVPMKNNQ-ITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVP 70
Query: 141 --PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE-- 196
K+SL P+ L LLG V+ DC+GPEVEK A+ G V+LLEN+RF+ EEE
Sbjct: 71 MPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGK 130
Query: 197 ---------KNDPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFL 243
K +P F L+ L D+YVNDAFGTAHRAH+S GV L GFL
Sbjct: 131 GKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKAGGFL 188
Query: 244 LQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-Q 302
++KEL+Y A+ SP+RPF AI+GG+KV+ KI +I ++L+ + +++GGGM FTF K
Sbjct: 189 MKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLN 248
Query: 303 GISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
+ +G+SL +E GV + LP D V ADKF D N+K
Sbjct: 249 NMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKF--DENAK 296
>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Adp, 3pg And Aluminium Trifluoride
Length = 417
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/290 (46%), Positives = 180/290 (62%), Gaps = 24/290 (8%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVT 140
D+KGK+V +R D NVP+ +NQ IT++ RI+AAVP+IK + NGAK V+L SHLGRP GV
Sbjct: 13 DVKGKRVVMRVDFNVPMKNNQ-ITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVP 71
Query: 141 --PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE-- 196
K+SL P+ L LLG V+ DC+GPEVEK A+ G V+LLEN+RF+ EEE
Sbjct: 72 MPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGK 131
Query: 197 ---------KNDPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFL 243
K +P F L+ L D+YVNDAFGTAHRAH+S GV L GFL
Sbjct: 132 GKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKAGGFL 189
Query: 244 LQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-Q 302
++KEL+Y A+ SP+RPF AI+GG+KV+ I +I ++L+ + +++GGGM FTF K
Sbjct: 190 MKKELNYFAKALESPERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLN 249
Query: 303 GISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
+ +G+SL +E GV + LP D V ADKF D N+K
Sbjct: 250 NMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKF--DENAK 297
>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Amp-Pcp And 3pg
Length = 416
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/290 (46%), Positives = 180/290 (62%), Gaps = 24/290 (8%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVT 140
D+KGK+V +R D NVP+ +NQ IT++ RI+AAVP+IK + NGAK V+L SHLGRP GV
Sbjct: 12 DVKGKRVVMRVDFNVPMKNNQ-ITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVP 70
Query: 141 --PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE-- 196
K+SL P+ L LLG V+ DC+GPEVEK A+ G V+LLEN+RF+ EEE
Sbjct: 71 MPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGK 130
Query: 197 ---------KNDPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFL 243
K +P F L+ L D+YVNDAFGTAHRAH+S GV L GFL
Sbjct: 131 GKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKAGGFL 188
Query: 244 LQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-Q 302
++KEL+Y A+ SP+RPF AI+GG+KV+ I +I ++L+ + +++GGGM FTF K
Sbjct: 189 MKKELNYFAKALESPERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLN 248
Query: 303 GISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
+ +G+SL +E GV + LP D V ADKF D N+K
Sbjct: 249 NMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKF--DENAK 296
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 234 bits (596), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 183/290 (63%), Gaps = 20/290 (6%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGV- 139
DLK K+VF+R D NVPLD + IT + RI AA+PTIK+++++ + V+L+SHLG+P G
Sbjct: 12 DLKDKRVFIRVDFNVPLD-GKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGER 70
Query: 140 TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE--- 196
K+SLAP+ L LLG V +DC+GPEVE V + G V+LLEN+R++ EEE
Sbjct: 71 NEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSR 130
Query: 197 ----------KND-PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQ 245
K D +F +L+SLAD+Y+NDAFGTAHRAH+S G L AGFLL+
Sbjct: 131 KVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAAGFLLE 188
Query: 246 KELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-QGI 304
KEL Y A+ +P RPF AI+GG+KV+ KI +I++LL+ D +++GGGM FTF K +
Sbjct: 189 KELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENT 248
Query: 305 SVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKVC 354
+G S+ ++ GV ++LP D +IAD F+ DAN+K
Sbjct: 249 EIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTV 298
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm
Resolution
Length = 416
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 182/290 (62%), Gaps = 20/290 (6%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGV- 139
DLK K+VF+R D NVPLD + IT + RI AA+PTIK+++++ + V+L+SHLGRP G
Sbjct: 13 DLKDKRVFIRVDFNVPLD-GKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNGER 71
Query: 140 TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE--- 196
K+SLAP+ L LLG V +DC+GPEVE V + G V+LLEN+R++ EEE
Sbjct: 72 NEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSR 131
Query: 197 ----------KND-PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQ 245
K D +F +L+SLAD+Y+NDAFGTAHRAH+S G L AGFLL+
Sbjct: 132 KVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAAGFLLE 189
Query: 246 KELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-QGI 304
KEL Y A+ +P RPF AI+GG+KV+ KI +I++LL+ D +++GGGM FTF K +
Sbjct: 190 KELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENT 249
Query: 305 SVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKVC 354
+G S+ ++ GV ++LP D +IAD F+ AN+K
Sbjct: 250 EIGDSIFDKAVGPEIAKLMEKAKAKGVEVVLPVDFIIADAFSASANTKTV 299
>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase
Ternary Complex With Amp-Pcp And 3pg
Length = 416
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/289 (45%), Positives = 178/289 (61%), Gaps = 22/289 (7%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-- 138
++KGK+V +R D NVP+ +NQ IT++ RI+AAVP+IK + +GAK V+L SHLGRP G
Sbjct: 12 NVKGKRVVMRVDFNVPMKNNQ-ITNNQRIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSP 70
Query: 139 VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE-- 196
+ K+SL P+ L LLG V+ DC+GPEVEK A G V+LLEN+RF+ EEE
Sbjct: 71 MPDKYSLQPVAVELKSLLGKDVLFLKDCVGPEVEKACADPAAGSVILLENLRFHVEEEGK 130
Query: 197 ---------KNDP----EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFL 243
K +P F L+ L D+YVNDAFGTAHRAH+S GV L GFL
Sbjct: 131 GKDASGNKVKAEPAKIKTFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPKKAGGFL 188
Query: 244 LQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-Q 302
++KEL+Y A+ SP+RPF AI+GG+KV+ KI +I ++L+ + +++GGGM FTF K
Sbjct: 189 MKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLN 248
Query: 303 GISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANS 351
+ +G+SL +E GV + LP D V ADKF A +
Sbjct: 249 NMEIGTSLFDEEGAKIVKNLMSKAEKNGVKITLPVDFVTADKFDEHAKT 297
>pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus
Thermophilus Hb8
pdb|1V6S|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From Thermus
Thermophilus Hb8
Length = 390
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 171/276 (61%), Gaps = 10/276 (3%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTP 141
D KGK+V VR D NVP+ D + + D+TRI ++PT++HL+ GA ++L SHLGRPKG P
Sbjct: 8 DPKGKRVLVRVDYNVPVQDGK-VQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDP 66
Query: 142 KFSLAPLVPRLSELLGIQVVKADDCIGP----EVEKLVASLPEGGVLLLENVRFYKEEEK 197
K+SLAP+ E L + +A P E + +L G VLLLENVRF EEK
Sbjct: 67 KYSLAPV----GEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEK 122
Query: 198 NDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSS 257
NDPE + + A L + +V DAFG+AHRAHAS GV + L P+ AGFL++KE+ L +
Sbjct: 123 NDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL-PAYAGFLMEKEVRALSRLLKD 181
Query: 258 PKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEXXXX 317
P+RP+A ++GG+KVS KIGVIESLL D LL+GG M FTF KA G VG SLVEE
Sbjct: 182 PERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLD 241
Query: 318 XXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKV 353
GV + LP DVV A++ ++V
Sbjct: 242 LAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRV 277
>pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate
Kinase In The Open Conformation
Length = 390
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/276 (47%), Positives = 171/276 (61%), Gaps = 10/276 (3%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTP 141
D KGK+V VR D NVP+ D + + D+TRI ++PT++HL+ GA ++L SHLGRPKG P
Sbjct: 8 DPKGKRVLVRVDYNVPVQDGK-VQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDP 66
Query: 142 KFSLAPLVPRLSELLGIQVVKADDCIGP----EVEKLVASLPEGGVLLLENVRFYKEEEK 197
++SLAP+ E L + +A P E + +L G VLLLENVRF EEK
Sbjct: 67 RYSLAPV----GEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEK 122
Query: 198 NDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSS 257
NDPE + + A L + +V DAFG+AHRAHAS GV + L P+ AGFL++KE+ L +
Sbjct: 123 NDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL-PAYAGFLMEKEVRALSRLLKD 181
Query: 258 PKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEXXXX 317
P+RP+A ++GG+KVS KIGVIESLL D LL+GG M FTF KA G VG SLVEE
Sbjct: 182 PERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLD 241
Query: 318 XXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKV 353
GV + LP DVV A++ ++V
Sbjct: 242 LAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRV 277
>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate
Kinase
Length = 403
Score = 227 bits (579), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 183/290 (63%), Gaps = 14/290 (4%)
Query: 71 AKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILS 130
AKK V +L DLKGK V VRAD NVPL D + IT+D RI A+PTI+++I+ G K++L
Sbjct: 9 AKKIVSDL---DLKGKTVLVRADFNVPLKDGE-ITNDNRIVQALPTIQYIIEQGGKIVLF 64
Query: 131 SHLGRPKGVT--PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
SHLG+ K + K +L P+ LS+ L +VV + G ++E + L EG VLL+EN
Sbjct: 65 SHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVEN 124
Query: 189 VRFY----KEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLL 244
R+ K+E KNDPE K ASL D++VNDAFGTAHR HAS G++ +L+ + AGFL+
Sbjct: 125 TRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLE-TAAGFLM 183
Query: 245 QKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGI 304
KE+ ++ G V+ P +P AI+GG+KVS KI VI++L+ D +++GGGM +TF KAQG
Sbjct: 184 DKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGK 243
Query: 305 SVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKVC 354
+G SL+EE G ++LP D +A +F+ DA V
Sbjct: 244 EIGISLLEE---DKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVV 290
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/289 (44%), Positives = 175/289 (60%), Gaps = 21/289 (7%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGA-KVILSSHLGRPKGV- 139
D+K KKV VR D NVP++ N I D RI A +PTI HL + GA K+IL SH GRP G+
Sbjct: 15 DIKNKKVLVRVDFNVPIE-NGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLR 73
Query: 140 TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE--- 196
K++L P+ L LLG +V+ +DC+G EVE + + E V+LLEN+RF+ EEE
Sbjct: 74 NEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKG 133
Query: 197 -----------KNDPE-FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLL 244
K D E F L LAD+++NDAFGTAHRAH+S GV +K S GFL+
Sbjct: 134 VDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSMVGVKLNVKAS--GFLM 191
Query: 245 QKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-QG 303
+KEL+Y A+ +P+RP AI+GG+KVS KI +I++LL+ D +++GGGM +TF K
Sbjct: 192 KKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNN 251
Query: 304 ISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
+ +G+SL +E V + LP D IAD F +AN+K
Sbjct: 252 MKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTK 300
>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg
And Mgadp
Length = 413
Score = 221 bits (562), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 173/291 (59%), Gaps = 24/291 (8%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-- 138
++KGK+V +R D NVP+ Q IT++ RI+AAVP+IK + +GAK V+L SHLGRP G
Sbjct: 9 NVKGKRVVMRVDFNVPMAAAQ-ITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSP 67
Query: 139 VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKN 198
+ K+SL P+ L LG V+ DC+GP VEK A G V+LLEN+RF+ EEE
Sbjct: 68 MPDKYSLQPVAAELKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFHVEEEGK 127
Query: 199 DPE---------------FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFL 243
+ F L++L D+YVNDAFGTAHRAH+S GV L FL
Sbjct: 128 GKDASGNKAAGEPAKIKAFRASLSALGDVYVNDAFGTAHRAHSSMVGVN--LPKKAGAFL 185
Query: 244 LQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-Q 302
++KEL+Y A SP+RPF AI+GG+KV+ KI +I ++L+ + +++GGGM FTF K
Sbjct: 186 MKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLN 245
Query: 303 GISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKV 353
+ +G+SL +E GV + LP D V ADKF D +K+
Sbjct: 246 NMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKF--DEQAKI 294
>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|B Chain B, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|C Chain C, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|D Chain D, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|16PK|A Chain A, Phosphoglycerate Kinase From Trypanosoma Brucei
Bisubstrate Analog
Length = 415
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/295 (43%), Positives = 171/295 (57%), Gaps = 27/295 (9%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131
KKS+ E DLKGKKV +R D NVP+ N IT+D RIR+A+PT+K ++ G +L S
Sbjct: 2 KKSINE---CDLKGKKVLIRVDFNVPVK-NGKITNDYRIRSALPTLKKVLTEGGSCVLMS 57
Query: 132 HLGRPKGV-------------TPKF----SLAPLVPRLSELLGIQVVKADDCIGPEVEKL 174
HLGRPKG+ P F +L P+ RLSELL V A DC+ +
Sbjct: 58 HLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCL--NAADV 115
Query: 175 VASLPEGGVLLLENVRFYKEE----EKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEG 230
V+ + G V+LLENVRFYKEE K+ AK LAS D+Y++DAFGTAHR A+ G
Sbjct: 116 VSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTG 175
Query: 231 VTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLL 290
+ K L AG+L++KE+ Y + +P RP AIVGG+KVS KI +++++L+ D LL+
Sbjct: 176 IPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLI 235
Query: 291 GGGMIFTFYKAQGISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKF 345
GG M +TF KAQG S+G S EE V ++LP D V +F
Sbjct: 236 GGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEF 290
>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
With Bound Adp From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 395
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/277 (44%), Positives = 172/277 (62%), Gaps = 11/277 (3%)
Query: 78 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK 137
L DLK KKV VR D NVP+ D + +T RI AA+PTI++++ G VIL SHLGRP
Sbjct: 9 LKDVDLKDKKVLVRVDFNVPVKDGK-VTSKVRIEAAIPTIQYILDQGGAVILMSHLGRPT 67
Query: 138 G--VTPKFSLAPLVPRLSELLGIQVVKADDCI-GPEVEKLVASLPEGGVLLLENVRFYKE 194
+FSL P+ LSE++ V A D + G +V+ G +++ ENVRF
Sbjct: 68 EGEYDSQFSLEPVAKALSEIINKPVKFAKDWLDGVDVKA-------GEIVMCENVRFNSG 120
Query: 195 EEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGA 254
E+K+ + +KK+ASL D++V DAF TAHRA AST GV KY+ + AG LL E+ L A
Sbjct: 121 EKKSTDDLSKKIASLGDVFVMDAFATAHRAQASTYGVAKYIPVACAGILLTNEIQALEKA 180
Query: 255 VSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEX 314
+ SPK+P AAIVGGSKVS+K+ V+ +LL+ +IL++GGG+ TF KA+G VG+SL E+
Sbjct: 181 LKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQD 240
Query: 315 XXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANS 351
GVN+ +P DV +A +F+ +A +
Sbjct: 241 LVAEATEILAKAKALGVNIPVPVDVRVAKEFSENAQA 277
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/289 (44%), Positives = 172/289 (59%), Gaps = 21/289 (7%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGA-KVILSSHLGRPKGV- 139
D+K KKV VR D NVP++ N I D RI A +PTI HL + GA K+IL SH GRP G+
Sbjct: 21 DIKNKKVLVRVDFNVPIE-NGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLR 79
Query: 140 TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE--- 196
K++L P+ L LLG +V+ +DC+G EVE + + E V+LLEN+RF+ EEE
Sbjct: 80 NEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKG 139
Query: 197 -----------KNDPE-FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLL 244
K D E F L LAD+++NDAFGTAHRAH+S GV +K S GFL
Sbjct: 140 VDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSXVGVKLNVKAS--GFLX 197
Query: 245 QKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-QG 303
+KEL+Y A+ +P+RP AI+GG+KVS KI +I++LL+ D ++GGG +TF K
Sbjct: 198 KKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNN 257
Query: 304 ISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
+G+SL +E V + LP D IAD F +AN+K
Sbjct: 258 XKIGTSLFDEAGSKIVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTK 306
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/289 (44%), Positives = 172/289 (59%), Gaps = 21/289 (7%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGA-KVILSSHLGRPKGV- 139
D+K KKV VR D NVP++ N I D RI A +PTI HL + GA K+IL SH GRP G+
Sbjct: 22 DIKNKKVLVRVDFNVPIE-NGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLR 80
Query: 140 TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE--- 196
K++L P+ L LLG +V+ +DC+G EVE + + E V+LLEN+RF+ EEE
Sbjct: 81 NEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKG 140
Query: 197 -----------KNDPE-FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLL 244
K D E F L LAD+++NDAFGTAHRAH+S GV +K S GFL
Sbjct: 141 VDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSXVGVKLNVKAS--GFLX 198
Query: 245 QKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-QG 303
+KEL+Y A+ +P+RP AI+GG+KVS KI +I++LL+ D ++GGG +TF K
Sbjct: 199 KKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNN 258
Query: 304 ISVGSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSK 352
+G+SL +E V + LP D IAD F +AN+K
Sbjct: 259 XKIGTSLFDEAGSKIVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTK 307
>pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
From Francisella Tularensis Subsp. Tularensis Schu S4
pdb|4EHJ|B Chain B, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
From Francisella Tularensis Subsp. Tularensis Schu S4
Length = 392
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 123/277 (44%), Positives = 171/277 (61%), Gaps = 11/277 (3%)
Query: 78 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK 137
L DLK KKV VR D NVP+ D + +T RI AA+PTI++++ G VIL SHLGRP
Sbjct: 6 LKDVDLKDKKVLVRVDFNVPVKDGK-VTSKVRIEAAIPTIQYILDQGGAVILXSHLGRPT 64
Query: 138 G--VTPKFSLAPLVPRLSELLGIQVVKADDCI-GPEVEKLVASLPEGGVLLLENVRFYKE 194
+FSL P+ LSE++ V A D + G +V+ G ++ ENVRF
Sbjct: 65 EGEYDSQFSLEPVAKALSEIINKPVKFAKDWLDGVDVKA-------GEIVXCENVRFNSG 117
Query: 195 EEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGA 254
E+K+ + +KK+ASL D++V DAF TAHRA AST GV KY+ + AG LL E+ L A
Sbjct: 118 EKKSTDDLSKKIASLGDVFVXDAFATAHRAQASTYGVAKYIPVACAGILLTNEIQALEKA 177
Query: 255 VSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEX 314
+ SPK+P AAIVGGSKVS+K+ V+ +LL+ +IL++GGG+ TF KA+G VG+SL E+
Sbjct: 178 LKSPKKPXAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQD 237
Query: 315 XXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANS 351
GVN+ +P DV +A +F+ +A +
Sbjct: 238 LVAEATEILAKAKALGVNIPVPVDVRVAKEFSENAQA 274
>pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase
Length = 387
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 129/291 (44%), Positives = 181/291 (62%), Gaps = 18/291 (6%)
Query: 74 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHL 133
SV +++ DL GK+VF+RADLNVP+ D + +T D RIRA++PTI+ ++ GAKV+++SHL
Sbjct: 2 SVIKMTDLDLAGKRVFIRADLNVPVKDGK-VTSDARIRASLPTIELALKQGAKVMVTSHL 60
Query: 134 GRPKG--VTPKFSLAPLVPRLSELLG--IQVVKADDCIGPEVEKLVASLPEGGVLLLENV 189
GRP +FSL P+V L + L +++VK D G +V EG +++LENV
Sbjct: 61 GRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVK-DYLDGVDV-------AEGELVVLENV 112
Query: 190 RFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELD 249
RF K E+K+D +KK A+L D++V DAFGTAHRA AST G+ K+ + AG LL ELD
Sbjct: 113 RFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELD 172
Query: 250 YLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSS 309
L A+ P RP AIVGGSKVS+K+ V++SL + D L++GGG+ TF AQG VG S
Sbjct: 173 ALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKS 232
Query: 310 LVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKVCFLNSYK 360
L E N+ +PSDV +A +F+ A + + +N K
Sbjct: 233 LYEADLVDEAKRLLTT-----CNIPVPSDVRVATEFSETAPATLKSVNDVK 278
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 138/228 (60%), Gaps = 17/228 (7%)
Query: 142 KFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE----- 196
K+SLAP+ L LLG V +DC+GPEVE V + G V+LLEN+R++ EEE
Sbjct: 3 KYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKV 62
Query: 197 --------KND-PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKE 247
K D +F +L+SLAD+Y+NDAFGTAHRAH+S G L AGFLL+KE
Sbjct: 63 DGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAAGFLLEKE 120
Query: 248 LDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-QGISV 306
L Y A+ +P RPF AI+GG+KV+ KI +I++LL+ D +++GGGM FTF K + +
Sbjct: 121 LKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEI 180
Query: 307 GSSLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKVC 354
G S+ ++ GV ++LP D +IAD F+ DAN+K
Sbjct: 181 GDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTV 228
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 45/58 (77%), Gaps = 2/58 (3%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG 138
DLK K+VF+R D NVPL D + IT + RI AA+PTIK+++++ + V+L+SHLGRP G
Sbjct: 357 DLKDKRVFIRVDFNVPL-DGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNG 413
>pdb|2CUN|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
pdb|2CUN|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
Length = 410
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 137/245 (55%), Gaps = 14/245 (5%)
Query: 78 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK 137
L + K VF+R DLN P+ D + I D R +A +PTI++LI++GAKV++ +H G+P
Sbjct: 4 LEDFNFHNKTVFLRVDLNSPMKDGK-IISDARFKAVLPTIRYLIESGAKVVIGTHQGKP- 61
Query: 138 GVTPKFSLAPLVPR-LSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE 196
+ ++ R LSELL V +D G + + L G V +LEN+RF EE
Sbjct: 62 -YSEDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEV 120
Query: 197 KNDP-------EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELD 249
KN P KKL+ + D VNDAF TAHR+ S G + +KP + GFL++KE++
Sbjct: 121 KNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFAR-IKPMIMGFLMEKEIE 179
Query: 250 YLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLL--ETCDILLLGGGMIFTFYKAQGISVG 307
L+ A S P ++GG+KV + V+E++L E D++L GG + F A+G +G
Sbjct: 180 ALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLG 239
Query: 308 SSLVE 312
VE
Sbjct: 240 RKNVE 244
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 195 EEKNDPEFAKKLASLADLYVNDAFGTAHRAHAS--TEGVTKYLKPSVAGFLLQKELDYLV 252
+ +NDP K Y +AF TA R+ T G T K VA FL Q +
Sbjct: 16 KHRNDPACEGK-----GFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFLAQTSHETTG 70
Query: 253 GAVSSPKRPFA 263
GA SP P+A
Sbjct: 71 GAAGSPDGPYA 81
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 212 LYVNDAFGTAHRAHAS--TEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFA 263
Y +AF TA R+ A+ T G + K VA FL Q + GA +SP P+A
Sbjct: 29 FYSYNAFITAARSFAAFGTTGDSNTRKREVAAFLAQTSHETTGGAATSPDGPYA 82
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 244 LQKE-LDYLVGAVSSPKRPFAAIVGGSKVSSKIG 276
L KE L+++VG V+SP R F A+ GG+ ++ + G
Sbjct: 11 LHKEALEHIVGGVNSPSRSFKAVGGGAPIAXERG 44
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 222 HRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESL 281
+R + TE V K + + K L+ VG++ P+R + G+ + I + L
Sbjct: 33 NRTTSKTEEVFK--EHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPL 90
Query: 282 LETCDILLLGGGMIF 296
L+ DIL+ GG F
Sbjct: 91 LDIGDILIDGGNTHF 105
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 222 HRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESL 281
+R + TE V K + + K L+ VG++ P+R + G+ + I + L
Sbjct: 34 NRTTSKTEEVFK--EHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPL 91
Query: 282 LETCDILLLGGGMIF 296
L+ DIL+ GG F
Sbjct: 92 LDIGDILIDGGNTHF 106
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 222 HRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESL 281
+R + TE V K + + K L+ VG++ P+R + G+ + I + L
Sbjct: 35 NRTTSKTEEVFK--EHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPL 92
Query: 282 LETCDILLLGGGMIF 296
L+ DIL+ GG F
Sbjct: 93 LDIGDILIDGGNTHF 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,736,814
Number of Sequences: 62578
Number of extensions: 330630
Number of successful extensions: 1034
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 44
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)